Query 013802
Match_columns 436
No_of_seqs 181 out of 2181
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 1.8E-52 3.8E-57 421.4 43.6 375 54-435 23-407 (557)
2 PRK15049 L-asparagine permease 100.0 1.4E-49 3.1E-54 396.8 41.5 357 55-434 24-401 (499)
3 PRK10249 phenylalanine transpo 100.0 6.4E-49 1.4E-53 389.4 41.0 357 53-434 15-390 (458)
4 PRK11387 S-methylmethionine tr 100.0 7.7E-49 1.7E-53 390.8 41.3 356 54-434 9-387 (471)
5 PRK10238 aromatic amino acid t 100.0 1.5E-48 3.2E-53 386.6 41.4 357 53-434 6-381 (456)
6 TIGR01773 GABAperm gamma-amino 100.0 7.5E-48 1.6E-52 382.4 40.3 356 54-434 7-383 (452)
7 COG0833 LysP Amino acid transp 100.0 1.4E-48 3E-53 371.2 33.0 355 56-434 41-423 (541)
8 PRK10746 putative transport pr 100.0 1.5E-47 3.3E-52 379.2 41.4 357 53-434 4-383 (461)
9 TIGR00909 2A0306 amino acid tr 100.0 2.1E-47 4.5E-52 377.5 40.9 370 57-434 1-371 (429)
10 PRK10435 cadB lysine/cadaverin 100.0 2.3E-47 5.1E-52 376.3 40.4 356 56-434 2-374 (435)
11 PRK10644 arginine:agmatin anti 100.0 1.9E-47 4.1E-52 378.6 40.0 359 54-434 3-373 (445)
12 KOG1289 Amino acid transporter 100.0 2.1E-48 4.5E-53 368.9 31.0 365 50-430 39-432 (550)
13 PRK10836 lysine transporter; P 100.0 5.1E-47 1.1E-51 379.1 41.0 357 53-434 9-394 (489)
14 PRK11357 frlA putative fructos 100.0 6.4E-47 1.4E-51 375.0 40.5 359 54-434 3-373 (445)
15 PRK10655 potE putrescine trans 100.0 6.8E-47 1.5E-51 374.3 39.2 356 57-434 4-371 (438)
16 PRK11049 D-alanine/D-serine/gl 100.0 2.4E-46 5.3E-51 372.3 41.1 356 54-434 15-394 (469)
17 PRK10580 proY putative proline 100.0 3.6E-46 7.7E-51 370.5 41.9 357 53-434 3-380 (457)
18 TIGR00911 2A0308 L-type amino 100.0 3.3E-46 7.1E-51 375.0 41.5 363 53-434 36-410 (501)
19 PRK11021 putative transporter; 100.0 5.2E-46 1.1E-50 364.7 42.0 349 61-434 1-357 (410)
20 TIGR00908 2A0305 ethanolamine 100.0 3.5E-46 7.5E-51 369.7 41.1 355 54-434 2-368 (442)
21 TIGR00905 2A0302 transporter, 100.0 3.9E-46 8.4E-51 371.5 39.7 359 57-434 5-379 (473)
22 KOG1287 Amino acid transporter 100.0 9.4E-47 2E-51 357.6 31.4 360 53-431 6-376 (479)
23 TIGR03428 ureacarb_perm permea 100.0 1.3E-45 2.8E-50 368.0 40.5 372 50-430 4-393 (475)
24 KOG1286 Amino acid transporter 100.0 3.6E-47 7.9E-52 374.7 27.0 363 54-435 25-419 (554)
25 PRK10197 gamma-aminobutyrate t 100.0 3.3E-45 7.1E-50 361.7 38.7 341 69-434 2-363 (446)
26 COG1113 AnsP Gamma-aminobutyra 100.0 1.1E-45 2.5E-50 344.3 31.1 357 53-434 7-384 (462)
27 TIGR00913 2A0310 amino acid pe 100.0 1E-44 2.2E-49 362.7 40.1 353 58-434 1-387 (478)
28 TIGR03810 arg_ornith_anti argi 100.0 1.2E-44 2.6E-49 360.4 39.7 356 59-434 1-375 (468)
29 TIGR00930 2a30 K-Cl cotranspor 100.0 8.4E-45 1.8E-49 380.6 38.5 368 53-434 70-481 (953)
30 TIGR00907 2A0304 amino acid pe 100.0 9.4E-44 2E-48 355.9 39.5 369 51-433 4-403 (482)
31 PF13520 AA_permease_2: Amino 100.0 2E-41 4.3E-46 334.9 35.4 351 61-434 1-370 (426)
32 COG0531 PotE Amino acid transp 100.0 7.6E-40 1.6E-44 327.7 40.3 364 53-434 6-384 (466)
33 TIGR03813 put_Glu_GABA_T putat 100.0 2.5E-38 5.4E-43 315.7 37.5 357 59-434 1-380 (474)
34 TIGR00910 2A0307_GadC glutamat 100.0 1.9E-37 4.2E-42 309.9 37.8 356 57-434 2-383 (507)
35 PF00324 AA_permease: Amino ac 100.0 2E-41 4.3E-46 338.8 7.6 350 66-433 2-386 (478)
36 PRK15238 inner membrane transp 100.0 2.2E-36 4.7E-41 303.1 41.6 364 57-434 5-417 (496)
37 TIGR00837 araaP aromatic amino 100.0 1.5E-27 3.2E-32 232.1 30.4 338 68-434 4-352 (381)
38 KOG2082 K+/Cl- cotransporter K 100.0 6.9E-29 1.5E-33 239.5 20.5 367 59-434 113-589 (1075)
39 KOG1288 Amino acid transporter 99.9 3E-26 6.6E-31 219.8 19.1 364 60-436 66-468 (945)
40 TIGR00912 2A0309 spore germina 99.9 1.5E-23 3.3E-28 202.2 37.0 288 59-371 1-295 (359)
41 TIGR00814 stp serine transport 99.9 1.8E-20 3.9E-25 180.4 32.3 344 66-434 8-372 (397)
42 KOG2083 Na+/K+ symporter [Inor 99.9 4.8E-22 1E-26 189.8 13.9 354 55-429 24-405 (643)
43 PHA02764 hypothetical protein; 99.9 3.4E-20 7.4E-25 163.9 23.9 276 52-392 5-285 (399)
44 PF03222 Trp_Tyr_perm: Tryptop 99.9 6.7E-18 1.4E-22 163.0 35.6 345 59-434 1-358 (394)
45 PRK10483 tryptophan permease; 99.8 2.5E-17 5.5E-22 157.5 32.3 351 55-435 5-367 (414)
46 PF03845 Spore_permease: Spore 99.8 4.2E-17 9.1E-22 154.6 33.3 287 60-372 1-292 (320)
47 PRK09664 tryptophan permease T 99.8 1.1E-16 2.4E-21 152.9 33.2 345 62-435 10-368 (415)
48 TIGR00796 livcs branched-chain 99.8 1.7E-16 3.8E-21 150.8 33.6 318 70-430 4-343 (378)
49 PRK15132 tyrosine transporter 99.8 3.3E-16 7.1E-21 150.6 32.6 341 62-434 4-355 (403)
50 PRK13629 threonine/serine tran 99.8 3.5E-15 7.6E-20 142.7 33.5 345 68-434 26-408 (443)
51 COG0814 SdaC Amino acid permea 99.8 3.1E-15 6.7E-20 145.6 31.8 284 56-358 4-301 (415)
52 PF01235 Na_Ala_symp: Sodium:a 99.5 7.4E-11 1.6E-15 112.7 29.7 292 56-372 14-338 (416)
53 KOG1304 Amino acid transporter 99.5 1.6E-10 3.5E-15 110.3 30.3 341 58-434 44-407 (449)
54 KOG1303 Amino acid transporter 99.5 5.3E-11 1.1E-15 115.3 27.3 276 55-357 32-320 (437)
55 PLN03074 auxin influx permease 99.4 4.1E-10 8.9E-15 111.5 31.9 239 58-321 43-294 (473)
56 PTZ00206 amino acid transporte 99.4 1.3E-09 2.9E-14 108.3 34.3 245 62-321 61-319 (467)
57 COG1115 AlsT Na+/alanine sympo 99.4 2.8E-09 6E-14 100.9 32.1 292 56-372 58-382 (452)
58 TIGR00835 agcS amino acid carr 99.4 6.2E-09 1.3E-13 100.2 32.8 287 59-372 45-365 (425)
59 COG3949 Uncharacterized membra 99.1 2.3E-07 5E-12 84.3 29.1 265 67-364 9-281 (349)
60 PRK11375 allantoin permease; P 99.1 1.3E-06 2.9E-11 87.1 36.3 333 53-408 19-364 (484)
61 PF01490 Aa_trans: Transmembra 98.9 1.9E-10 4E-15 113.3 -1.2 291 59-373 1-303 (409)
62 TIGR00800 ncs1 NCS1 nucleoside 98.8 0.00012 2.7E-09 72.6 34.9 240 53-311 6-259 (442)
63 TIGR00813 sss transporter, SSS 98.7 7.7E-05 1.7E-09 73.4 33.1 285 58-368 2-322 (407)
64 PRK09442 panF sodium/panthothe 98.7 0.0003 6.5E-09 70.8 37.3 282 58-366 40-345 (483)
65 COG0733 Na+-dependent transpor 98.7 0.00012 2.6E-09 70.1 31.8 302 64-375 12-334 (439)
66 TIGR02119 panF sodium/pantothe 98.7 0.00031 6.8E-09 70.5 36.7 284 58-367 39-345 (471)
67 TIGR02121 Na_Pro_sym sodium/pr 98.6 0.00046 1E-08 69.5 35.0 282 58-368 35-346 (487)
68 PF05525 Branch_AA_trans: Bran 98.6 0.00043 9.4E-09 67.1 31.9 315 70-427 12-346 (427)
69 COG1457 CodB Purine-cytosine p 98.6 0.00053 1.1E-08 66.5 32.2 242 94-370 54-299 (442)
70 PF00474 SSF: Sodium:solute sy 98.6 6.8E-06 1.5E-10 80.8 20.0 285 58-368 5-320 (406)
71 PRK11017 codB cytosine permeas 98.5 0.0011 2.5E-08 64.9 35.3 219 57-305 7-229 (404)
72 PRK12488 acetate permease; Pro 98.5 0.00089 1.9E-08 68.3 34.9 156 58-239 66-223 (549)
73 TIGR02711 symport_actP cation/ 98.5 0.0012 2.6E-08 67.4 34.6 155 58-238 66-222 (549)
74 PRK09395 actP acetate permease 98.5 0.002 4.4E-08 65.8 35.1 154 57-238 67-224 (551)
75 COG1953 FUI1 Cytosine/uracil/t 98.4 0.0011 2.4E-08 64.5 29.6 329 51-406 31-376 (497)
76 COG0591 PutP Na+/proline sympo 98.4 0.0031 6.7E-08 63.4 34.5 286 57-370 36-355 (493)
77 TIGR03648 Na_symport_lg probab 98.4 0.0031 6.7E-08 64.6 33.3 149 58-234 31-183 (552)
78 PRK15419 proline:sodium sympor 98.3 0.0049 1.1E-07 62.3 35.8 158 58-239 39-203 (502)
79 KOG1305 Amino acid transporter 98.3 6E-05 1.3E-09 73.1 18.9 250 58-322 3-258 (411)
80 TIGR02358 thia_cytX probable h 98.2 0.0078 1.7E-07 58.6 33.6 242 94-371 31-275 (386)
81 PRK10484 putative transporter; 98.1 0.019 4.2E-07 58.4 34.5 289 58-367 37-354 (523)
82 PF01566 Nramp: Natural resist 98.0 0.016 3.4E-07 56.0 30.5 256 89-373 10-286 (358)
83 PF02133 Transp_cyt_pur: Perme 98.0 0.00058 1.3E-08 67.9 19.1 240 56-309 4-251 (440)
84 PRK15433 branched-chain amino 97.9 0.024 5.3E-07 55.2 33.6 276 69-371 16-309 (439)
85 PF02028 BCCT: BCCT family tra 97.9 0.028 6.1E-07 55.9 34.2 299 56-375 70-424 (485)
86 PRK00701 manganese transport p 97.9 0.034 7.3E-07 55.0 30.9 89 75-167 48-137 (439)
87 COG1114 BrnQ Branched-chain am 97.7 0.048 1E-06 52.0 30.3 280 64-370 8-306 (431)
88 COG4147 DhlC Predicted symport 97.7 0.056 1.2E-06 52.3 27.0 282 94-408 79-410 (529)
89 KOG2466 Uridine permease/thiam 97.4 0.052 1.1E-06 52.6 21.3 308 51-382 46-380 (572)
90 COG1914 MntH Mn2+ and Fe2+ tra 97.4 0.14 3E-06 49.9 31.5 157 58-244 14-171 (416)
91 PF02705 K_trans: K+ potassium 97.1 0.24 5.1E-06 49.6 22.8 219 198-429 133-367 (534)
92 KOG4303 Vesicular inhibitory a 96.9 0.0042 9.1E-08 57.1 8.1 234 56-315 112-357 (524)
93 PLN00151 potassium transporter 96.9 0.15 3.3E-06 53.0 19.7 217 198-427 275-508 (852)
94 PRK09950 putative transporter; 96.7 0.78 1.7E-05 46.0 31.6 24 58-81 81-104 (506)
95 COG1292 BetT Choline-glycine b 96.7 0.76 1.6E-05 45.7 27.1 35 136-170 186-220 (537)
96 PLN00150 potassium ion transpo 96.3 0.53 1.2E-05 49.0 19.6 217 198-427 215-448 (779)
97 PRK09928 choline transport pro 96.3 1.6 3.5E-05 45.1 31.7 25 58-82 90-114 (679)
98 PRK03356 L-carnitine/gamma-but 95.8 2.4 5.2E-05 42.5 31.7 25 58-82 83-107 (504)
99 PRK10745 trkD potassium transp 95.5 2 4.4E-05 43.7 19.1 217 198-427 144-376 (622)
100 PLN00149 potassium transporter 95.3 4.7 0.0001 42.3 25.6 221 198-427 199-435 (779)
101 TIGR00842 bcct choline/carniti 95.1 3.8 8.2E-05 40.6 31.3 24 58-81 34-57 (453)
102 TIGR00794 kup potassium uptake 94.8 2.9 6.3E-05 43.3 18.1 218 198-428 169-403 (688)
103 PLN00148 potassium transporter 94.7 6.5 0.00014 41.3 23.1 216 198-426 198-430 (785)
104 PF00209 SNF: Sodium:neurotran 94.5 6.4 0.00014 40.1 27.4 100 208-310 191-300 (523)
105 TIGR01197 nramp NRAMP (natural 92.5 11 0.00024 36.7 33.8 43 329-371 282-324 (390)
106 COG4145 PanF Na+/panthothenate 90.7 16 0.00034 34.9 29.1 227 112-365 96-342 (473)
107 KOG2349 Na+:iodide/myo-inosito 90.6 4.3 9.2E-05 41.3 12.2 224 124-371 108-363 (585)
108 KOG3660 Sodium-neurotransmitte 86.9 42 0.00091 34.9 25.3 175 62-243 39-262 (629)
109 KOG3659 Sodium-neurotransmitte 86.5 40 0.00087 34.3 20.1 117 197-314 254-378 (629)
110 PF02554 CstA: Carbon starvati 80.9 54 0.0012 31.5 22.1 94 63-158 54-148 (376)
111 COG3158 Kup K+ transporter [In 76.5 86 0.0019 31.8 13.6 216 198-426 149-380 (627)
112 PTZ00206 amino acid transporte 75.8 61 0.0013 32.5 13.1 55 328-382 122-176 (467)
113 PRK00968 tetrahydromethanopter 62.3 11 0.00024 32.5 3.8 33 282-314 204-237 (240)
114 COG1575 MenA 1,4-dihydroxy-2-n 51.6 1.1E+02 0.0025 28.5 8.7 74 56-145 87-161 (303)
115 COG4060 MtrD Tetrahydromethano 50.6 22 0.00048 29.6 3.6 33 282-314 194-227 (230)
116 COG4146 Predicted symporter [G 48.2 2.6E+02 0.0057 27.0 20.2 46 125-170 104-150 (571)
117 TIGR02230 ATPase_gene1 F0F1-AT 42.9 94 0.002 23.7 5.7 28 54-81 35-62 (100)
118 KOG4753 Predicted membrane pro 39.6 12 0.00027 29.0 0.6 52 57-109 47-99 (124)
119 PRK09488 sdhD succinate dehydr 39.4 1.9E+02 0.0041 22.7 8.0 91 222-313 18-110 (115)
120 PRK15433 branched-chain amino 38.2 4.2E+02 0.009 26.4 14.9 75 128-226 269-343 (439)
121 PF11998 DUF3493: Protein of u 36.6 1.6E+02 0.0035 21.1 6.8 39 278-316 6-44 (75)
122 PF11947 DUF3464: Protein of u 35.2 97 0.0021 25.7 5.1 58 74-131 74-136 (153)
123 PF03596 Cad: Cadmium resistan 34.9 1.8E+02 0.0038 25.2 6.9 58 62-121 97-154 (191)
124 PF11174 DUF2970: Protein of u 33.5 1.3E+02 0.0029 20.1 4.6 44 262-308 2-45 (56)
125 PF12666 PrgI: PrgI family pro 32.6 1.2E+02 0.0026 22.5 5.0 31 54-84 10-40 (93)
126 COG2142 SdhD Succinate dehydro 31.3 2.2E+02 0.0049 22.4 6.3 58 252-310 51-108 (117)
127 COG4325 Predicted membrane pro 31.2 4.3E+02 0.0093 25.6 9.1 65 365-431 101-174 (464)
128 COG1966 CstA Carbon starvation 28.4 6.6E+02 0.014 25.8 21.0 97 65-162 56-152 (575)
129 TIGR02840 spore_YtaF putative 24.2 4.9E+02 0.011 22.8 8.7 58 58-121 123-183 (206)
130 cd03494 SQR_TypeC_SdhD Succina 23.9 3.2E+02 0.007 20.6 8.2 63 248-311 32-94 (99)
131 PF05525 Branch_AA_trans: Bran 23.5 7.4E+02 0.016 24.6 16.6 75 128-225 265-339 (427)
132 PF01080 Presenilin: Presenili 23.2 2.5E+02 0.0055 27.4 6.4 13 59-71 326-338 (403)
133 PF05915 DUF872: Eukaryotic pr 22.0 2.9E+02 0.0062 21.7 5.5 28 94-121 76-103 (115)
134 COG3949 Uncharacterized membra 21.4 7.2E+02 0.016 23.7 11.0 71 297-370 39-109 (349)
135 PF03222 Trp_Tyr_perm: Tryptop 21.3 7.7E+02 0.017 24.0 13.8 78 295-372 32-110 (394)
136 PF03806 ABG_transport: AbgT p 21.3 8.7E+02 0.019 24.6 12.4 142 217-360 254-399 (502)
137 COG3768 Predicted membrane pro 21.2 4.3E+02 0.0093 24.8 7.1 66 54-119 54-120 (350)
138 KOG2736 Presenilin [Signal tra 20.4 3.5E+02 0.0077 26.0 6.5 13 94-106 345-357 (406)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=1.8e-52 Score=421.38 Aligned_cols=375 Identities=39% Similarity=0.709 Sum_probs=328.6
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhhchHHhh-hhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHH
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~-~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (436)
+++++|+++.+|++.++++.++|+|+|..++... ..+||+.+++|+++++.+++.+++|+|+++++|+ +||.|+|+++
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~-sGg~Y~y~~~ 101 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPK-AGSAYLYSYV 101 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcceeeHHH
Confidence 4579999999999999999999999999999765 5789999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHH
Q 013802 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILEL-FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (436)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (436)
.+|+.+||++||.+++.|....+..+..++.++..+++. .... ..+.... . .+.... ...+++++++++++.+
T Consensus 102 ~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~--~~~~~~~-~-~~~l~~--~~~~~a~~ii~l~~~l 175 (557)
T TIGR00906 102 TVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQF--RRTYFKL-N-YDGLAE--YPDFFAVCLILLLAVL 175 (557)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--ccccccc-c-CCcccc--cchHHHHHHHHHHHHH
Confidence 999999999999999999999999998889888876541 0000 0000000 0 000001 1145667777888899
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCC--------CCCCCchHHHHHHHHHHHHHhhhhHHHhhhhh
Q 013802 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS--------PFAPNGFKEILTGATVVFFAYVGFDAVANSAE 283 (436)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~ 283 (436)
|.+|.|..+|++.+...++++.++++++.++.+.+.+|+. ++.|.++.+++.+...++|+|.|+|.+++++|
T Consensus 176 n~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~ae 255 (557)
T TIGR00906 176 LSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGE 255 (557)
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHH
Confidence 9999999999999999999999998888888777766765 56677778899999999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 284 ESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (436)
Q Consensus 284 E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 363 (436)
|+|||+|++||++..++.+++++|++..++.....|+++++.++|+..+++..+.++...++.+..+.+.+++.++.+++
T Consensus 256 E~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~ 335 (557)
T TIGR00906 256 EVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFP 335 (557)
T ss_pred hccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888999998888888888889999999999999999999
Q ss_pred HHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhHhHc
Q 013802 364 QSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHSQFLPLIYL 435 (436)
Q Consensus 364 ~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l 435 (436)
.+|++++|||||.+|++|+|+|+|+++|++|+++..+++.++.++.+.+.+.++.+.++++.|.+.+...+.
T Consensus 336 ~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~ 407 (557)
T TIGR00906 336 LPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLI 407 (557)
T ss_pred HHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999999999999988888899999999999999999998766554
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=1.4e-49 Score=396.76 Aligned_cols=357 Identities=21% Similarity=0.355 Sum_probs=300.6
Q ss_pred CCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHh
Q 013802 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (436)
Q Consensus 55 ~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (436)
++++|+++.+|+.++++|.++|+|+|..++...+.+||..+++|++++++.++.+.+++||++++|+ +||.|+|++|.+
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~-aGg~y~y~~~~~ 102 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPS-SGSFVSYAREFL 102 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHh
Confidence 3589999999999999999999999999999999999998889999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 013802 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (436)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (436)
||..||.+||.++++|...........+.+.... +.+ ...|. .+...+++++++.+|++
T Consensus 103 G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~----------------~~~~~~~~~l~~~iN~~ 161 (499)
T PRK15049 103 GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW----GAF-GGVPQ----------------WVFALAALTIVGTMNMI 161 (499)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC-CCCcH----------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999998876655554555544321 100 01233 24567778889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhc---ccc-----cCC------CCCCCCchHHHHHHHHHHHHHhhhhHHHhh
Q 013802 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VDV-----SNW------SPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (436)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (436)
|+|..++++.++..+|++.++++++.++.. .+. .++ .++.|+++.+++.++..++|+|.|+|.+++
T Consensus 162 gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~ 241 (499)
T PRK15049 162 GVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGT 241 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999988877776655431 110 011 123355666677778889999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q 013802 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (436)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 359 (436)
++||+|||+|++||++..++..+.++|+...++....+|.+++. .++|+.++++..+.++...++.+..+++.+++.++
T Consensus 242 ~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns 321 (499)
T PRK15049 242 AAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNS 321 (499)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988775 45799999999999998999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHHHHHHHHhhHh
Q 013802 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLVGHSQFLPLI 433 (436)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~~~~~~~ 433 (436)
.+++.||+++++||||.+|++|+|+|| +++|++|++++.+++++..++. .++.+.++.+.+.++.|++++.+.
T Consensus 322 ~~~~~sR~l~a~Ardg~lP~~f~kv~k-~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~ 400 (499)
T PRK15049 322 GLYCTGRILRSMAMGGSAPSFMAKMSR-QHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQ 400 (499)
T ss_pred HHHHHHHHHHHHHhcCCcCHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 5999999999888765432221 366778888888889999887665
Q ss_pred H
Q 013802 434 Y 434 (436)
Q Consensus 434 ~ 434 (436)
+
T Consensus 401 l 401 (499)
T PRK15049 401 M 401 (499)
T ss_pred H
Confidence 4
No 3
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=6.4e-49 Score=389.37 Aligned_cols=357 Identities=20% Similarity=0.362 Sum_probs=304.4
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHH
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (436)
++++++|+++.+|+.+++++.++|+|+|..++...+.+||..+++|++++++.++++++++|+++++|+ +||.|.|++|
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHH
Confidence 345799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
.+||.+||.+||.+|+++....+......+.++..+ +| ..+. .....+++++...+|
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~---~~----~~~~----------------~~~~~~~~~l~~~lN 150 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYW---FP----DVPT----------------WIWAAAFFIIINAVN 150 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CC----cCcH----------------HHHHHHHHHHHHHHH
Confidence 999999999999999999887777776666666652 12 2222 345677788889999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc---cc------ccC-CC--CCCCCchHHHHHHHHHHHHHhhhhHHHhh
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---VD------VSN-WS--PFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~------~~~-~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (436)
++|+|..+++|.....+|++.++.+++.++.. .+ .++ +. ++.++++.+++.++....|+|.|+|.+++
T Consensus 151 ~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 230 (458)
T PRK10249 151 LVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGI 230 (458)
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999987777666554321 11 111 11 12356778889999999999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q 013802 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (436)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 359 (436)
++||+|||+|++||++..+.....++|++..++.....|+++... ++|+.+++++.++++...++.+..+++.+++.++
T Consensus 231 ~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 310 (458)
T PRK10249 231 TAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNS 310 (458)
T ss_pred HHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888888877653 5799999988888888888899999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHHHHHHHHhhHh
Q 013802 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLVGHSQFLPLI 433 (436)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~~~~~~~ 433 (436)
.+++.+|+++++||||.+|++|+|+|| +++|++|++++.+++.++.++. .++.+.++.+...++.|++++.+.
T Consensus 311 ~~~~~sR~l~a~ardg~lP~~~~kv~~-~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~ 389 (458)
T PRK10249 311 GVYSNSRMLFGLSVQGNAPKFLTRVSR-RGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAH 389 (458)
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 4999999999999987766553 245666777778888898877665
Q ss_pred H
Q 013802 434 Y 434 (436)
Q Consensus 434 ~ 434 (436)
+
T Consensus 390 l 390 (458)
T PRK10249 390 L 390 (458)
T ss_pred H
Confidence 4
No 4
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=7.7e-49 Score=390.75 Aligned_cols=356 Identities=21% Similarity=0.360 Sum_probs=296.1
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHH
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (436)
+++++|+++.+++.+++++.++|+|+|..++...+.+|| +.+++|++++++.++++++++||++++|+ +||.|.|++|
T Consensus 9 ~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aGG~y~y~~~ 87 (471)
T PRK11387 9 AGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TGAFHVYAAR 87 (471)
T ss_pred chhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 346899999999999999999999999999999999998 48999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
.+||.+||.+||.+|++|....+......+.++.. .+| ..+.| ...+++.++++.+|
T Consensus 88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~p----~~~~~----------------~~~~~~~~~~~~in 144 (471)
T PRK11387 88 YLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQY---WFP----QVPVW----------------PWCLLFCALIFGLN 144 (471)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccC----cCcHH----------------HHHHHHHHHHHHHH
Confidence 99999999999999999998877766655554433 212 22222 33445567788999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-------cc------cCC--CCCCCCchHHHHHHHHHHHHHhhhhHH
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------DV------SNW--SPFAPNGFKEILTGATVVFFAYVGFDA 277 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-------~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~G~e~ 277 (436)
++|+|..++.+.....+|++.++.+++.++... +. +++ .++.+++..+++.++..++|+|.|+|.
T Consensus 145 ~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~ 224 (471)
T PRK11387 145 VVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTEL 224 (471)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999999988877666553311 00 111 123345556788888999999999999
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHH
Q 013802 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTT 356 (436)
Q Consensus 278 ~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 356 (436)
+++++||+|||+|++||++..+..++.++|++..+++....|.++.. +++|+.+++++.+++++..++.+..+++.+++
T Consensus 225 ~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~ 304 (471)
T PRK11387 225 IGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSA 304 (471)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888877764 46799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHHHHHHHHh
Q 013802 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLVGHSQFL 430 (436)
Q Consensus 357 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~~~~ 430 (436)
.++++++.||++++|||||.+|++|+|+||+ ++|++|++++.+++++..+.. .++.+.++.+...++.|++++
T Consensus 305 ~~~~~~~~sR~l~a~ardg~lP~~f~~~~~~-~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~ 383 (471)
T PRK11387 305 ANSGLYASGRMLWSLSNEGTLPACFARLTKR-GIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSIC 383 (471)
T ss_pred HHHHHHHhhHHHHHHHhcCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999974 999999998876554333321 134466677777778888877
Q ss_pred hHhH
Q 013802 431 PLIY 434 (436)
Q Consensus 431 ~~~~ 434 (436)
...+
T Consensus 384 ~~~i 387 (471)
T PRK11387 384 ASHF 387 (471)
T ss_pred HHHH
Confidence 5554
No 5
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1.5e-48 Score=386.57 Aligned_cols=357 Identities=22% Similarity=0.421 Sum_probs=304.3
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHH
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (436)
.+++++|+++.+|..+++++.++|+|+|..++...+.+||..+++|++++++.++++++++|+++++|. +||.|+|++|
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPV-AGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 445689999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
.+||..||.+||.++++|....+......+++++.. +| ..+.| ....++.++...+|
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~---~p----~~~~~----------------~~~~i~~~~~~~lN 141 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFW---YP----EIPTW----------------VSAAVFFVVINAIN 141 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC----cCcHH----------------HHHHHHHHHHHHHH
Confidence 999999999999999999999888888888877663 22 23333 34566677889999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh--ccc-------ccC-C--CCCCCCchHHHHHHHHHHHHHhhhhHHHhh
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAF--EVD-------VSN-W--SPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~--~~~-------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (436)
++|+|..++++.+...+|++.++++++.++. ..+ ..+ + .++.++++.++..++..+.|+|.|+|.+++
T Consensus 142 ~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 221 (456)
T PRK10238 142 LTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGI 221 (456)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999887766554322 110 111 1 123456677788888889999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q 013802 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLV 359 (436)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 359 (436)
++||+|||+|++||++..+.....++|+..........|.+++. +++|+.+++++.+.++...++++..+.+.+++.++
T Consensus 222 ~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~ 301 (456)
T PRK10238 222 TAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNS 301 (456)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887777778887765 35799999988888888889999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHHHHHHHHhhHh
Q 013802 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLVGHSQFLPLI 433 (436)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~~~~~~~ 433 (436)
++++.||+++++||||.+|++|+|+||+ ++|++|++++.+++.+..++. .++.+.++.+.+.++.|.+.+...
T Consensus 302 ~~~~~sR~l~a~ardg~lP~~f~kv~~~-~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~ 380 (456)
T PRK10238 302 CVYCNSRMLFGLAQQGNAPKALASVDKR-GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAH 380 (456)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 999999999999987776652 355666777777888888877665
Q ss_pred H
Q 013802 434 Y 434 (436)
Q Consensus 434 ~ 434 (436)
+
T Consensus 381 l 381 (456)
T PRK10238 381 M 381 (456)
T ss_pred H
Confidence 4
No 6
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=7.5e-48 Score=382.42 Aligned_cols=356 Identities=22% Similarity=0.328 Sum_probs=301.1
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHH
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (436)
+.+++|+++.+|..+++++.++|+|+|..++...+.+|+..+++|++++++.++.+++++||++++|+ +||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPD-TGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHH
Confidence 55689999999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHH
Q 013802 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (436)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (436)
+||.+||..||.+++++....+......+.++..+. | ..+. .++..+++++.+.+|.
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~----------------~~~~~~~~~~~~~~n~ 142 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWF---P----DIPL----------------WLFSLILTIVLTLTNL 142 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----cCcH----------------HHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888777632 2 2232 3567777888899999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc---c----cc---cCC---CCCCCCchHHHHHHHHHHHHHhhhhHHHhh
Q 013802 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFE---V----DV---SNW---SPFAPNGFKEILTGATVVFFAYVGFDAVAN 280 (436)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~----~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~ 280 (436)
+|.|..++++.+...+|++.++.+++.++.. . +. .++ .++.++++.+++.++....|+|.|+|.+++
T Consensus 143 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~ 222 (452)
T TIGR01773 143 YSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTI 222 (452)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhH
Confidence 9999999999999999998887776654321 1 11 111 123356677799999999999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC--CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q 013802 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL 358 (436)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 358 (436)
++||+|||+|++||++..+.....++|++..+......|.++.. ++.|+..+.+..++++...++.+..+++.+++.+
T Consensus 223 ~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~ 302 (452)
T TIGR01773 223 AAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLN 302 (452)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777777765543 3348888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh---C---HHHHHHHHHHHHHHHHHHHhhH
Q 013802 359 VGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---N---VRVLSHILSVGTLVGHSQFLPL 432 (436)
Q Consensus 359 ~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~y~~~~~~ 432 (436)
+.+++.+|+++++||||.+|++|+|+|| +++|++|++++.+++.+..++. + ++.+.++.+...++.|.+++..
T Consensus 303 ~~~~~~sR~~~a~ardg~lP~~~~~v~~-~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~ 381 (452)
T TIGR01773 303 SALYTTSRMLYSLAERGDAPRVFMKLNK-KGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVS 381 (452)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 5999999999998887766552 2 3445555666677788886655
Q ss_pred hH
Q 013802 433 IY 434 (436)
Q Consensus 433 ~~ 434 (436)
.+
T Consensus 382 ~i 383 (452)
T TIGR01773 382 QL 383 (452)
T ss_pred HH
Confidence 43
No 7
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-48 Score=371.16 Aligned_cols=355 Identities=21% Similarity=0.317 Sum_probs=319.6
Q ss_pred CcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHh
Q 013802 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (436)
Q Consensus 56 ~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (436)
++||+++.+|+.++++|+.||+|+|+..+..+..+||+ .++++++.++..+++..+..||++.+|. +|++..|+.|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-SGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhhhhhc
Confidence 69999999999999999999999999999999999997 9999999999999999999999999998 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 013802 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (436)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (436)
+|-+||..||.||+.|.+..+......+..++.+.. . ..|. .+...++.+++.++|.+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p---~---~v~~----------------~~w~~iF~~~i~~iN~~ 177 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP---D---TVPP----------------WIWIAIFLVLIFLLNLF 177 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC---C---CCCh----------------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998887432 0 1244 45677889999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc----------cccCCC--CCCCCchHHHHHHHHHHHHHhhhhHHHhhhh
Q 013802 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------DVSNWS--PFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (436)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (436)
++|..+..+..+..+|++.++++++.++.-. ..+.|. ..+++|+.++...+..+.|+|.|.|.+.-.+
T Consensus 178 ~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaA 257 (541)
T COG0833 178 GVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAA 257 (541)
T ss_pred cccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeee
Confidence 9999999999999999999999998876521 112232 3457889999999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC---------CCChHHHHHHHcChhHHHHHHHHHHHHHH
Q 013802 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (436)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 353 (436)
+|.|||+|++|||+...+..+.++|++..+.+...+|.+|.. ..+|+..++++.+.+.++.+++++++.+.
T Consensus 258 gEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~sv 337 (541)
T COG0833 258 GESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSV 337 (541)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987732 34699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHHHHHH
Q 013802 354 TTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLVGHS 427 (436)
Q Consensus 354 ~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~ 427 (436)
++++|+.++++||++|+||+||..||+|+|+||+ |+|.+|++++.+++++-.+-. -++++.++.+++.++.|.
T Consensus 338 lSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~-GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~ 416 (541)
T COG0833 338 LSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRR-GVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWG 416 (541)
T ss_pred HHHhhccchHHHHHHHHHHhcCCCchHHHhhCCC-CCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 999999999998885443332 367889999999999999
Q ss_pred HHhhHhH
Q 013802 428 QFLPLIY 434 (436)
Q Consensus 428 ~~~~~~~ 434 (436)
.++.+.+
T Consensus 417 ~I~~shi 423 (541)
T COG0833 417 SICLSHI 423 (541)
T ss_pred HHHHHHH
Confidence 9987764
No 8
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.5e-47 Score=379.21 Aligned_cols=357 Identities=22% Similarity=0.318 Sum_probs=302.6
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHH
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (436)
.+++++|+++.+|..+++++++||+|+|..++...+.+||+.+++|++++++.++++.+++||++++|+ +||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
.+||.+||.+||.+|+.|....+......+.+++.+ +| ..+.| ....+++++...+|
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~---~p----~~~~~----------------~~~~~~~~~~~~lN 139 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFW---FP----EMAQW----------------IPALIAVALVALAN 139 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cC----CCchH----------------HHHHHHHHHHHHHH
Confidence 999999999999999999888888777777777662 22 23332 34556677888899
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc-----c------cccCCCC---CCCCchHHHHHHHHHHHHHhhhhHHH
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE-----V------DVSNWSP---FAPNGFKEILTGATVVFFAYVGFDAV 278 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~-----~------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (436)
++|+|..+++|.....+|++.++++++.++.. . +.+|+.+ +.++++.++..++..+.|+|.|+|.+
T Consensus 140 ~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v 219 (461)
T PRK10746 140 LAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELI 219 (461)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999988877776654321 0 1123321 33567888999999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 013802 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (436)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 357 (436)
++.+||+|||+|++||++..++..+.++|++..++.....|.+++.. ++|+..++++.+.+....+++++.+.+.+++.
T Consensus 220 ~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~ 299 (461)
T PRK10746 220 GITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGC 299 (461)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999988764 56999999888888888889999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHH---hhh-----CHHHHHHHHHHHHHHHHHHH
Q 013802 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA---GLF-----NVRVLSHILSVGTLVGHSQF 429 (436)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~y~~~ 429 (436)
++.+++.||+++++||||.+|++|+|+|| +|+|++|+++..+...+.. ++. .++.+.++.+.+.++.|.++
T Consensus 300 n~~~~~~sR~l~~~a~~g~lP~~~~~~~~-~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i 378 (461)
T PRK10746 300 NSGMYSCGRMLYALAKNRQLPAAMAKVSR-HGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVI 378 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996 5999999988764433211 111 24566777788888889988
Q ss_pred hhHhH
Q 013802 430 LPLIY 434 (436)
Q Consensus 430 ~~~~~ 434 (436)
+...+
T Consensus 379 ~~~~i 383 (461)
T PRK10746 379 LISQL 383 (461)
T ss_pred HHHHH
Confidence 76554
No 9
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=2.1e-47 Score=377.51 Aligned_cols=370 Identities=37% Similarity=0.627 Sum_probs=321.2
Q ss_pred cccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhch
Q 013802 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (436)
++|+++.++.+.+.++.++|+|++..++.....+|+..+++|+++++..++.+++++|+++++|+ +||.|+|++|.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhCc
Confidence 58999999999999999999999999998888889988899999999999999999999999999 99999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 013802 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (436)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (436)
..|++.+|.+++.+....+.....+++++..++. ..+.+.|.+.... ..+ .....+..++++++++.+|++|.
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~-~~~~~~~~i~~~~~~~~l~~~g~ 152 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLP---GVGLDLPAVLTAK---PGN-GGVFNLPALLIVLFLTYILYLGA 152 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccccCchhhhcC---Ccc-cccccHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999998887543 1111222221100 000 00112456778889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHH
Q 013802 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (436)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (436)
|..+|++.+...++++.++.+++.++.+.+.+++.+..+.++.++..++...+|+|.|+|.+.+++||+|||+|++||++
T Consensus 153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai 232 (429)
T TIGR00909 153 KESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAI 232 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHH
Confidence 99999999999999999888777777766667777766777778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013802 297 LGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 375 (436)
Q Consensus 297 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 375 (436)
..+..++.++|++..++.....|.+++. ++.|+..+.++.++++...++.+..+++.+++.++++.+.+|++++++|||
T Consensus 233 ~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg 312 (429)
T TIGR00909 233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDG 312 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999988888887764 456888888888889999899999999999999999999999999999999
Q ss_pred CCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 376 LLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 376 ~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
.+|++|+|+|+|+++|++|++++.+++.++....+++.+.++.+...++.|++.+...+
T Consensus 313 ~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~ 371 (429)
T TIGR00909 313 LLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVI 371 (429)
T ss_pred CCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998899999999999999988777778899999999999999998765544
No 10
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=2.3e-47 Score=376.33 Aligned_cols=356 Identities=20% Similarity=0.268 Sum_probs=297.4
Q ss_pred CcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhc
Q 013802 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (436)
Q Consensus 56 ~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (436)
+.+|+++.++++.+.++.++|+|+|..++... .+|+.++++|+++++..++.+++++||++++|+ +||.|+|++| +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHH-HC
Confidence 45889999999999999999999999999764 578889999999999999999999999999999 9999999999 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 013802 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (436)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (436)
|.+||.+||.+|+..+............++... +|... +++ ...+++++++++++.+|.+|
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~---~p~~~---~~~-------------~~~~~~~~i~~~~~~ln~~g 139 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTF---FPVLN---DPI-------------PAGIACIAIVWVFTFVNMLG 139 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccccC---ChH-------------HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999877777666666677777663 33211 111 11345667777889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhccccc----CCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCC
Q 013802 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS----NWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (436)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~ 291 (436)
+|..++++.+..+++++.++.+.+.++.+.+.+ ++.+..+.++.+++.++..++|+|.|+|.+++++||+|||+|+
T Consensus 140 vk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~ 219 (435)
T PRK10435 140 GTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRT 219 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcccc
Confidence 999999999998888877776665555443332 3332223456789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (436)
Q Consensus 292 ~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (436)
+||++..+..++.++|++..++.....|.+++. .++|+.+.+++.++++...++++..+++.+++.+++++..+|..++
T Consensus 220 iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~ 299 (435)
T PRK10435 220 VPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVR 299 (435)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988874 5689998888888888888888888999999999999999999999
Q ss_pred hhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhh----h--------CHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 371 LGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL----F--------NVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 371 ~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~----~--------~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
+||||.+||+|+|+|| +|+|.+|++++.+++.++... . .++.+.++.+...++.|++++...+
T Consensus 300 ~ardG~lP~~f~k~nk-~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~i 374 (435)
T PRK10435 300 AANDGNFPKVYGEVDK-NGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLI 374 (435)
T ss_pred HHhCCCccHHHHhhCc-CCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 599999999988776554321 1 2456777778888888888876643
No 11
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=1.9e-47 Score=378.58 Aligned_cols=359 Identities=23% Similarity=0.358 Sum_probs=297.7
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHH
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (436)
+++++|+++.++++.+.++.++|+|+|..++...+. |+..+++|+++++..++.+++++||++++|+ +||.|+|++|.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~-aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-GGIAIYGWLVTIIGALGLSMVYAKMSSLDPS-PGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHHH
Confidence 345789999999999999999999999999876664 5567899999999999999999999999999 99999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHH
Q 013802 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (436)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (436)
+||.+||++||.+|+.++............+.... +|.. .++| ...++.++++++++.+|.
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~-------------~~~~~~~~~~~~~~~ln~ 141 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYF---FPIL---KDPL-------------VLTITCVVVLWIFVLLNI 141 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccc---CCcH-------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999988877666665555665552 2211 1111 124566777888999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC-CCC---CchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCC
Q 013802 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAP---NGFKEILTGATVVFFAYVGFDAVANSAEESKKPQ 289 (436)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~ 289 (436)
+|.|..+++|.+...++++.++++.+.++...+.+++.+ +.+ +++..+..++...+|+|.|+|.+.+++||+|||+
T Consensus 142 ~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~ 221 (445)
T PRK10644 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK 221 (445)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc
Confidence 999999999999999999888877776655444333322 111 2345677788899999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 290 RDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (436)
Q Consensus 290 k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 368 (436)
|++||++..+..+++++|++..++.....|.+++. +++|+.+++++..+++...++.+..+++.+++.++++...+|++
T Consensus 222 r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~ 301 (445)
T PRK10644 222 RNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888887764 46788888877777777777777888899999999999999999
Q ss_pred HHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh-------CHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 369 LGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 369 ~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
++++|||.+|++|+|+|| +++|++|++++.+++.++.+.. .++.+.++.+...++.|++.+...+
T Consensus 302 ~a~ardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~ 373 (445)
T PRK10644 302 KAAADDGLFPPIFARVNK-AGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALL 373 (445)
T ss_pred HHHHhCCCccHHHHhhCc-CCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 5999999999999988766543 2566777777778888888776554
No 12
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-48 Score=368.94 Aligned_cols=365 Identities=22% Similarity=0.302 Sum_probs=312.0
Q ss_pred cCCCCCCcccccchhHHHHHHhhhh-hcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchh
Q 013802 50 RTNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAY 127 (436)
Q Consensus 50 ~~~~~~~~~r~l~~~~~~~~~i~~~-ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y 127 (436)
+.++||+++|++++|+.+.++++.+ .-.|+-......+.++|+. ..|+|++++.+.++++.+++|+++++|+ +||.|
T Consensus 39 ~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pt-sGgLy 117 (550)
T KOG1289|consen 39 ELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPT-SGGLY 117 (550)
T ss_pred HcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCC-CCcHH
Confidence 6789999999999999999999876 2234334444556767775 9999999999999999999999999999 99999
Q ss_pred hhhHH----HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHH
Q 013802 128 LYAYT----AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPI 203 (436)
Q Consensus 128 ~~~~~----~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (436)
.|+.. .+||..+|++||...++++...++.....++.++.++.+ .+|+|..+++++ ..+..+
T Consensus 118 ~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l------~np~y~~~~~~~--------~~v~~a 183 (550)
T KOG1289|consen 118 FWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSL------TNPNYEPTNYHQ--------FGVFEA 183 (550)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhh------cCCCCcccceEe--------ehHHHH
Confidence 99996 678899999999999999999999999999999997763 467776665544 788899
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc--------------cccCCCCCCCCchHHHHHHHHHHH
Q 013802 204 LLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--------------DVSNWSPFAPNGFKEILTGATVVF 269 (436)
Q Consensus 204 ~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 269 (436)
+.++.+++|+.+.|..++++.+...+.++.++..+|...... +.+|.++|.++|| .|+.++....
T Consensus 184 i~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afil~f~~~~ 262 (550)
T KOG1289|consen 184 ILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFILGFFNPA 262 (550)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHHHhhccce
Confidence 999999999999999999999999999998888888776532 2334445656666 7888999999
Q ss_pred HHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccc---cC--CCChHHHHHHHcChhHHHHH
Q 013802 270 FAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF---LD--EDAPLSDAFASRGLKYVSVL 344 (436)
Q Consensus 270 ~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~i 344 (436)
|++.|+|+.+|++||+|||+|+.||+|+.+..+..+......+.+..+.++|. ++ .++|+.+++.+..++-....
T Consensus 263 wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~ 342 (550)
T KOG1289|consen 263 WTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVF 342 (550)
T ss_pred eEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEe
Confidence 99999999999999999999999999999999999999999999998888533 12 25799999866554444477
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHhhh--CHHHHHHHHHH
Q 013802 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--NVRVLSHILSV 420 (436)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~ 420 (436)
+....+++.+.++.+++.+.||+.|+.+|||.|| ++++++|+++++|.+|+++..+++.++.++. +..+++++.+.
T Consensus 343 ~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~ 422 (550)
T KOG1289|consen 343 LLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSA 422 (550)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7888888999999999999999999999999999 9999999988999999999999999888877 77888888888
Q ss_pred HHHHHHHHHh
Q 013802 421 GTLVGHSQFL 430 (436)
Q Consensus 421 ~~~~~y~~~~ 430 (436)
+.+..+.-..
T Consensus 423 a~i~l~~Ay~ 432 (550)
T KOG1289|consen 423 AAIALFIAYA 432 (550)
T ss_pred HHHHHHHHHH
Confidence 8777766543
No 13
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=5.1e-47 Score=379.13 Aligned_cols=357 Identities=23% Similarity=0.362 Sum_probs=291.1
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhH
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~ 131 (436)
++++++|+++.+++.++++|.++|+|+|..++...+.+||. .+++|++++++.++.+++++||++++|+ +||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHH
Confidence 44678999999999999999999999999999999999996 8999999999999999999999999999 999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHH
Q 013802 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIV 211 (436)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (436)
+.+|+.+|+.+||.+++.+....+........++.. .+| ..+.| ....++++++..+
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~---~~~----~~~~~----------------~~~~~~~~~~~~l 144 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSW---WFP----DTPGW----------------IWSALFLGVIFLL 144 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCC----CCchH----------------HHHHHHHHHHHHH
Confidence 999999999999999998766655433333332322 111 22222 3455666677899
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhc------c----cccCCCC---CCCCchHHHHHHHHHHHHHhhhhHHH
Q 013802 212 LCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFE------V----DVSNWSP---FAPNGFKEILTGATVVFFAYVGFDAV 278 (436)
Q Consensus 212 ~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~------~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (436)
|++|+|..+++|.+....|+..++.+++.++.. . +.+++.+ ..++++.+++.+.....|+|.|+|.+
T Consensus 145 N~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~ 224 (489)
T PRK10836 145 NYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELI 224 (489)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHH
Confidence 999999999999999999998877766544321 1 1123321 11345656666666678999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC---------CCChHHHHHHHcChhHHHHHHHHHH
Q 013802 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD---------EDAPLSDAFASRGLKYVSVLISFGA 349 (436)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (436)
++++||+|||+|++||++..++..+.++|++..++....+|.++.. ..+|+..+++..+.++...++.+..
T Consensus 225 ~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~i 304 (489)
T PRK10836 225 GIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVI 304 (489)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHH
Confidence 9999999999999999999999999999999999988888765421 1368888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHH
Q 013802 350 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTL 423 (436)
Q Consensus 350 ~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 423 (436)
+++.+++.++.+++.+|+++++||||.+|++|+|+||+ ++|++|++++.+++.+..+.. .++.+.++.+.+.+
T Consensus 305 l~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~-~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 383 (489)
T PRK10836 305 LTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRG-GVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGF 383 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999974 999999999999887766553 13456677777888
Q ss_pred HHHHHHhhHhH
Q 013802 424 VGHSQFLPLIY 434 (436)
Q Consensus 424 ~~y~~~~~~~~ 434 (436)
+.|++++...+
T Consensus 384 ~~y~~~~~a~l 394 (489)
T PRK10836 384 IAWLGIAISHY 394 (489)
T ss_pred HHHHHHHHHHH
Confidence 88888775544
No 14
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=6.4e-47 Score=375.02 Aligned_cols=359 Identities=25% Similarity=0.407 Sum_probs=296.2
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcC-ch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhH
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAG-PG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G-~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~ 131 (436)
+++++|++++++.+.++++.++|+|+|..++.....+| +. .+++|++++++.++.+++++|+++++|+ +||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-NGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCceeeHH
Confidence 45699999999999999999999999999998776666 44 8999999999999999999999999999 999999999
Q ss_pred HHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHH
Q 013802 132 TAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (436)
Q Consensus 132 ~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (436)
+.+||.+|+..+|..+ .......+......++++... .|. . + .....++.++.+++..
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~---~~~----~-~-------------~~~~~~~~~~~~~~~~ 140 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFL---TPI----D-P-------------LLGKFIAAGLIIAFML 140 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCC----c-h-------------HHHHHHHHHHHHHHHH
Confidence 9999999999999754 445555666666777766542 121 1 1 1114566677777889
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCC-----CCCc-hHHHHHHHHHHHHHhhhhHHHhhhhhh
Q 013802 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF-----APNG-FKEILTGATVVFFAYVGFDAVANSAEE 284 (436)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (436)
+|.+|.|..+|+|.+....+++.++++++.++...+.+++.+. ...+ +.+++.++...+|+|.|+|.+++++||
T Consensus 141 ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E 220 (445)
T PRK11357 141 LHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGE 220 (445)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 9999999999999999999999887777766543333333211 1112 456788889999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHH
Q 013802 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASR--GLKYVSVLISFGAVAGLTTTLLVGL 361 (436)
Q Consensus 285 ~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~ 361 (436)
+|||+|++||++..+..+++++|++..++.....|.+++.. +.|+.++++.. .+++...++.+..+++.+++.++.+
T Consensus 221 ~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 300 (445)
T PRK11357 221 IKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCV 300 (445)
T ss_pred hcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888887653 56888777653 3455556667778888899999999
Q ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 362 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 362 ~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
.+.+|++++++|||.+|++|+|+|+|+++|++|++++.+++.++.+..+++.+.++.+....+.|.+.....+
T Consensus 301 ~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i 373 (445)
T PRK11357 301 MYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSII 373 (445)
T ss_pred HhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998899999999999999988887778888888888888888877655443
No 15
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=6.8e-47 Score=374.31 Aligned_cols=356 Identities=21% Similarity=0.320 Sum_probs=297.8
Q ss_pred cccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhch
Q 013802 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (436)
++|+++.++++++++++++|+|+|..++... .+|+..+++|++++++.++.+++++|+++++|+ +||.|.|++|.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGTISILSWLVTAVGSMALAYAFAKCGMFSRK-SGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCchHHHHHHHcCc
Confidence 5789999999999999999999999988654 578888899999999999999999999999999 99999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 013802 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (436)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (436)
..||+.||.+++.+.............|+... +|. ..++ ....++.++++++.+.+|++|.
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~---~~~---~~~~-------------~~~~~~~~~~l~~~~~ln~~g~ 142 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTEL---FGA---TLSP-------------VQICLATIGVLWLCTVANFGGA 142 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc---ccch-------------HHHHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999887666666666776653 221 1111 1124566777788999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCC-CCCCCc---hHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCCh
Q 013802 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDL 292 (436)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~ 292 (436)
|..++++.+....+++.++++.+.++...+.+++. ++.+.+ +.++..++....|+|.|+|.+++++||+|||+||+
T Consensus 143 ~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~i 222 (438)
T PRK10655 143 RITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNV 222 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccc
Confidence 99999999999999888887777766555554443 232333 34677778889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013802 293 PIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (436)
Q Consensus 293 p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (436)
||++..+..+++++|++...+.....|.+++. +++|+.+.+++..+++...++.+..+++.+++.+++..+.+|+++++
T Consensus 223 PrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~ 302 (438)
T PRK10655 223 PIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSS 302 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888877764 46788888888777877778888888899999999999999999999
Q ss_pred hhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh-------CHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 372 GRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 372 a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
+|||.+|++|+|+||+ ++|+++++++.+++.++.+.. .++.+.++.+...++.|.+.+...+
T Consensus 303 a~dg~lP~~~~~v~~~-~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~ 371 (438)
T PRK10655 303 ADEGYFPKIFSRVTKV-DAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALV 371 (438)
T ss_pred hcCCchhHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999974 999999999998887665532 3567777888888888888775544
No 16
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=2.4e-46 Score=372.34 Aligned_cols=356 Identities=18% Similarity=0.320 Sum_probs=297.3
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHH
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (436)
+++++|+++.++...+++|.++|+|+|..++...+.+||..+++|++++++.++++.+++|++++.|. .|+.|.|++|.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 45699999999999999999999999999999999999998999999999999999999999999999 99999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHH
Q 013802 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (436)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (436)
+||..||++||.+++++....+......+.++... +| ..+. ...+.+++++++.+|+
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~---~p----~~~~----------------~~~~~~~~~~~~~iN~ 150 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFW---FP----DLSD----------------WVASLAVVLLLLSLNL 150 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC----CCcH----------------HHHHHHHHHHHHHHHH
Confidence 99999999999999999877777777777766652 22 1122 2345567778889999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-----cc----cCCC------CCCCCchHHHHHHHHHHHHHhhhhHHH
Q 013802 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-----DV----SNWS------PFAPNGFKEILTGATVVFFAYVGFDAV 278 (436)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-----~~----~~~~------~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (436)
+|.|..+++|.+...+|+..++.+++.++... +. .++. ++.|+++.+++.++...+|+|.|+|.+
T Consensus 151 ~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~ 230 (469)
T PRK11049 151 ATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELV 230 (469)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHH
Confidence 99999999999999999988888887765421 00 1111 233566777999999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 013802 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (436)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 357 (436)
++++||+|||+|++||++..+.+...++|++...+.....|.+++.. ++|+.+.++..+.++...++.+..+++.+++.
T Consensus 231 ~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~ 310 (469)
T PRK11049 231 GTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSA 310 (469)
T ss_pred HHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888999999999999888888887753 57888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHH---hhh-C----HHHHHHHHHHHHHHHHHHH
Q 013802 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA---GLF-N----VRVLSHILSVGTLVGHSQF 429 (436)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~---~~~-~----~~~~~~~~~~~~~~~y~~~ 429 (436)
++.+.+.+|++++++|||.+|++|+|+||| ++|++|++++.++..+.. ... + ++.+.++.+....+.|.+.
T Consensus 311 ~~~~~~~sR~l~a~ardg~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~ 389 (469)
T PRK11049 311 NSGVFSTSRMLFGLAQEGVAPKAFAKLSKR-AVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTII 389 (469)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986 999999999877654321 111 2 3444555555666777766
Q ss_pred hhHhH
Q 013802 430 LPLIY 434 (436)
Q Consensus 430 ~~~~~ 434 (436)
+...+
T Consensus 390 ~~a~~ 394 (469)
T PRK11049 390 LCSYL 394 (469)
T ss_pred HHHHH
Confidence 65443
No 17
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=3.6e-46 Score=370.49 Aligned_cols=357 Identities=20% Similarity=0.351 Sum_probs=296.9
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHH
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (436)
++++++|+++.++..+++++.++|+|+|..++...+.+||..+++|++++++.++.+++++|+++++|+ +||.|.|++|
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
.+||.+||.+||.+++.+....+.....++.+...+ +| ..+. ....++++++...+|
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~----------------~~~~~~~~~l~~~ln 138 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVW---FP----TVPH----------------WIWVLSVVLIICAVN 138 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CC----CCCh----------------HHHHHHHHHHHHHHH
Confidence 999999999999999999777777666666666552 12 2232 234556677788999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh-------cc-cccC----CC--CCCCCchHHHHHHHHHHHHHhhhhHHH
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAF-------EV-DVSN----WS--PFAPNGFKEILTGATVVFFAYVGFDAV 278 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~-------~~-~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (436)
++|.|..+++|.+...+++..++++++.++. .. +..+ +. +..++++.+++.++..+.|+|.|+|.+
T Consensus 139 ~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~ 218 (457)
T PRK10580 139 LMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII 218 (457)
T ss_pred HccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999999999887766554321 00 1111 11 233566778889999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 013802 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (436)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 357 (436)
++++||+|||+|++||++..+.....++|+...+......|.+++. .++|+...++..+.++...++.+..+.+.+++.
T Consensus 219 ~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 298 (457)
T PRK10580 219 GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAI 298 (457)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888888775 356888888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHHHHHHHHhh
Q 013802 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLVGHSQFLP 431 (436)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~~~~~ 431 (436)
++++.+.+|+++++||||.+|++|+|+|| +++|++|++++.++..+...+. .++.+.++.+.+.++.|.+++.
T Consensus 299 ~~~~~~~sR~~~~~ardg~lP~~~~kv~~-~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 377 (457)
T PRK10580 299 NSDVFGVGRMLHGMAEQGSAPKIFSKTSR-RGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILL 377 (457)
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 5999999999976554433221 2456777777778888888776
Q ss_pred HhH
Q 013802 432 LIY 434 (436)
Q Consensus 432 ~~~ 434 (436)
..+
T Consensus 378 ~~~ 380 (457)
T PRK10580 378 SQI 380 (457)
T ss_pred HHH
Confidence 544
No 18
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=3.3e-46 Score=374.96 Aligned_cols=363 Identities=26% Similarity=0.350 Sum_probs=293.6
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch--HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhh
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG--VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~--~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~ 130 (436)
++++++|+++.++.++++++.++|+|+|..++...+.+|+. .+++|++++++.++.+++++|+++++|+ +||.|+|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhH
Confidence 55679999999999999999999999999999988888873 5689999999999999999999999999 99999999
Q ss_pred HHHhchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHH
Q 013802 131 YTAFNELTAFLVFAQLMLD-YHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (436)
Q Consensus 131 ~~~~g~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (436)
+|.+||.+||+.+|..+.. +....+..+..+++++... .+|. ...+.| ...+++++++++.+
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~--~~~~--~~~~~~-------------~~~~i~~~~i~~~~ 177 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTP--VFPD--CEVPEW-------------AIRLVAVLCVLLLT 177 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCC--CCCchH-------------HHHHHHHHHHHHHH
Confidence 9999999999999987753 3444555556666665331 1121 012222 12567778888999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccccc---C--CCCCC---CCchHHHHHHHHHHHHHhhhhHHHhhh
Q 013802 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS---N--WSPFA---PNGFKEILTGATVVFFAYVGFDAVANS 281 (436)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---~--~~~~~---~~~~~~~~~~~~~~~~~~~G~e~~~~~ 281 (436)
.+|.+|.|..+|++.+...++++.++++++.++...... + ....+ +++..++..++..++|+|.|+|.++++
T Consensus 178 ~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~ 257 (501)
T TIGR00911 178 LVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFV 257 (501)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 999999999999999999999998888777665532211 1 11111 234567888999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHH
Q 013802 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLVG 360 (436)
Q Consensus 282 ~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 360 (436)
+||+|||+|++||++..+..+++++|++..++.....|.+++..+.+....+ +...+ +...++.+...++.+++.++.
T Consensus 258 a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~ 336 (501)
T TIGR00911 258 TEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGS 336 (501)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888776544333333 33323 455677788888999999999
Q ss_pred HHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 361 LYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 361 ~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
+.+.+|+++++||||.+|++|+|+|+|+++|++++++..+++++.....+...+.++.+....+.|.+.+...+
T Consensus 337 ~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i 410 (501)
T TIGR00911 337 LFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLL 410 (501)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999889999999999988877666667777777777777788887765444
No 19
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=5.2e-46 Score=364.69 Aligned_cols=349 Identities=20% Similarity=0.258 Sum_probs=281.5
Q ss_pred cchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHH
Q 013802 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (436)
Q Consensus 61 l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (436)
+++|+..++.+++++|+|+|..++...+.+|+..+++|++++++.++.+++++|+++++|+ +||.|.|++|.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPH-AGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHhHHHHhCchhHH
Confidence 5789999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHH
Q 013802 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (436)
Q Consensus 141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (436)
..||.++..+....+........+....+ |. +.|. ...+.+++.++.+.+|.+|.|..+
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~-------------~~~~~~~~~~~~~~ln~~Gv~~~~ 138 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALF---GW-----SSWQ-------------LLLAELLTLALLWLLNLRGASSSA 138 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHc---CC-----CCch-------------HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999998777666555545555555532 21 1111 135667778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccCC--CCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHH
Q 013802 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNW--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILG 298 (436)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~ 298 (436)
|++.+...+.+..+..+.. ....+..++ .+..+.++.++..++...+|+|.|+|.+++++||+|||+|++||++..
T Consensus 139 ~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~ 216 (410)
T PRK11021 139 NLQTVIALLIVALVVAIWW--AGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMI 216 (410)
T ss_pred HHHHHHHHHHHHHHHHHHH--HcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHH
Confidence 9999887655433332211 111122222 222345677889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccc-CCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013802 299 SLLICAALYVGVSLVLTGMVPYKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLL 377 (436)
Q Consensus 299 ~~~~~~v~y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~l 377 (436)
+..++.++|++..++.....+.++. ..+.|..+++++..+++...++.+..+++.+++.++.+.+.+|++++++|||.+
T Consensus 217 ~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~l 296 (410)
T PRK11021 217 GLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRP 296 (410)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999999999998887665554443 345677777766655656667788888999999999999999999999999999
Q ss_pred chhhhhhcCCCCCchhHHHHHHHHHHHHHhh-----hCHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 378 PSIFAKVHPKRHTPVHSQVWVGIVAGILAGL-----FNVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 378 P~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
||+|+|+|| +++|.++++++.+++.++.++ .+++.+.++.+...++.|.+.+...+
T Consensus 297 P~~~~k~~~-~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~ 357 (410)
T PRK11021 297 PSYLARLSA-RGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAAC 357 (410)
T ss_pred cHHHHhhcc-CCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 599999999998887765544 26777888888888888888765443
No 20
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=3.5e-46 Score=369.69 Aligned_cols=355 Identities=25% Similarity=0.385 Sum_probs=297.5
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHH
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (436)
+++++|+++.++.++++++.++| |.+...+.....+||. .++++++++++.++.+++++|+++++|+ +||.|.|++|
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 56699999999999999999997 7777777777888986 8899999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
.+||..||.+||.+++++....+.+...+++++...+ | ..+. ...+.+++++...+|
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~---p----~~~~----------------~~~~~~~~~~~~~ln 136 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLF---P----VGPG----------------WLAALVFYIVFIGIN 136 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c----cCch----------------hHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887743 2 2222 245667777888999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCC--------CCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhh
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW--------SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEE 284 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (436)
++|.|..++++.+..+++++.++++++....+.+..++ .++.+.++.+++.++..++|+|.|+|.+++++||
T Consensus 137 ~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE 216 (442)
T TIGR00908 137 ILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEE 216 (442)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887766555443333222222 2233455667888999999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcCh--hHHHHHHHHHHHHHHHHHHHHHH
Q 013802 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGL--KYVSVLISFGAVAGLTTTLLVGL 361 (436)
Q Consensus 285 ~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ 361 (436)
+|||+|++||++..+..++.++|+..........+.+++. .++|+.++++...+ .+...++.+..+++.+++.++.+
T Consensus 217 ~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~ 296 (442)
T TIGR00908 217 TKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGII 296 (442)
T ss_pred hcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998877776666766664 45688888876532 45666777777888889999999
Q ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 362 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 362 ~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
.+.+|+++++||||.+|++|+|+| |+|+|++|++++.+++.++.+..+.+.+.++.+.+.++.|++.+..++
T Consensus 297 ~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i 368 (442)
T TIGR00908 297 YGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHF 368 (442)
T ss_pred HHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 579999999999999988777767777888888888899998776554
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=3.9e-46 Score=371.55 Aligned_cols=359 Identities=25% Similarity=0.389 Sum_probs=301.5
Q ss_pred cccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhc
Q 013802 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (436)
.+|+++.+++..+.++.++|+|+|..++...+.+|+. .+++|++++++.++.+++++|+++++|+++||.|+|++|.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 4789999999999999999999999999888888886 789999999999999999999999999978999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 013802 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (436)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (436)
|..||..||.+++.++.....+.....+++...+ |... ..++ ....+.++++.++.+.+|++|
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~---p~~~-~~~~-------------~~~~~~~~~~~~~~~~ln~~G 147 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFF---PLFG-SGNP-------------VPSILGASVLLWVFTFLVLRG 147 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhc-CCCc-------------HHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888877777766666666632 3211 0111 112456677778899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCC-CCC-------CCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcC
Q 013802 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFA-------PNGFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (436)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (436)
.|..+|+|.+...++++.++++++.++...+.+++. ++. ++.+.++..++...+|+|.|+|.+++++||+||
T Consensus 148 i~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 227 (473)
T TIGR00905 148 VRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 999999999999999988888887776543333221 111 123557788889999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCCh-HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365 (436)
Q Consensus 288 p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 365 (436)
+|++||++..+..+++++|++..++.....|.+++. .++| ..++.+...+++...++.+..+++.+++.++.+.+.+
T Consensus 228 -~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~s 306 (473)
T TIGR00905 228 -KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAA 306 (473)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888888764 4667 6777777777888888889999999999999999999
Q ss_pred HHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh-----CHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 366 RLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 366 R~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
|++++|||||.+|++|+|+||| ++|++|++++.+++.++.++. +++.+.++.+...++.|++.+...+
T Consensus 307 R~~~amardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~ 379 (473)
T TIGR00905 307 EVPFSAAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLL 379 (473)
T ss_pred HHHHHHHhCCChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 999999999998887655542 5677888888888888988776544
No 22
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-47 Score=357.55 Aligned_cols=360 Identities=26% Similarity=0.437 Sum_probs=311.7
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCc-h-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhh
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYA 130 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~ 130 (436)
++.+++||++.+..+.+.+++++|+|+|..|..+..++|+ + ++..|++.++++++.++||+||++.+|+ +||+|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipk-sGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPK-SGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCcchhhH
Confidence 4566899999999999999999999999999999999997 4 8999999999999999999999999999 99999999
Q ss_pred HHHhchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHH
Q 013802 131 YTAFNELTAFLVFAQLML-DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (436)
Q Consensus 131 ~~~~g~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (436)
.|++||.++|...|.-++ ......+..+..+++|...- .+| . ...|++. ..+++.+++++++
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p--~fp-~-c~~p~~~-------------~~lla~~~l~~lt 147 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKP--FFP-L-CDVPRVA-------------SKLLAAALLVLLT 147 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc--cCC-C-CCCchHH-------------HHHHHHHHHHHHH
Confidence 999999999999998655 55556688899999994331 333 1 1223322 2788999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---cccCCCCC----CCCchHHHHHHHHHHHHHhhhhHHHhhhh
Q 013802 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSPF----APNGFKEILTGATVVFFAYVGFDAVANSA 282 (436)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (436)
++|+..+|+..++|.++...|++.+.++++.++... +.+|+.+. ...+...+..++....|+|.|||...+.+
T Consensus 148 ~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vt 227 (479)
T KOG1287|consen 148 LINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVT 227 (479)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccch
Confidence 999999999999999999999999999999988743 22232211 12234467889999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHH
Q 013802 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLLVGL 361 (436)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 361 (436)
||+|||+||+|||+..++.+++++|++.+++...++++|++..++.....+ +...+.+. +++.+.+.++.+++.++.+
T Consensus 228 eEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~i 306 (479)
T KOG1287|consen 228 EEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVI 306 (479)
T ss_pred HhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999999999999999999999999986665555555 45555555 8999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhh
Q 013802 362 YVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHSQFLP 431 (436)
Q Consensus 362 ~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 431 (436)
.+.||.++++||+|+||+.|++.|++..+|..+++++...+++..++.|++++.+..+....+.+.+...
T Consensus 307 fs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~ 376 (479)
T KOG1287|consen 307 FSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMA 376 (479)
T ss_pred HHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877999999999999999999989999999999998888877553
No 23
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.3e-45 Score=368.00 Aligned_cols=372 Identities=22% Similarity=0.264 Sum_probs=282.3
Q ss_pred cCCCCCCcccccchhHHHHHHhhhh-hcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhh
Q 013802 50 RTNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128 (436)
Q Consensus 50 ~~~~~~~~~r~l~~~~~~~~~i~~~-ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~ 128 (436)
+.+++|+++|+++.++.+.++++.+ ++.|++..++...+.+||..+++|++++++.++++++++||++++|+ +||.|+
T Consensus 4 ~~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~-aGG~Y~ 82 (475)
T TIGR03428 4 RFGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPI-SGAIYQ 82 (475)
T ss_pred hcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCHHH
Confidence 3678999999999999999999975 88999999999999999999999999999999999999999999999 999999
Q ss_pred hhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHH
Q 013802 129 YAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (436)
Q Consensus 129 ~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (436)
|++|.+||.+||++||.+++++....+........++......+.... ..+++... .+..+..+++.+++++.
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~ 155 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIG-EDPTLTSP------SGAANAVLLGSVLLVLT 155 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-cCccccCC------CchHHHHHHHHHHHHHH
Confidence 999999999999999999999987766665555444433211000000 11111100 00112356777788889
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccC---C----CCCCCCchHHHHHHHHHHHHHhhhhHHHhhh
Q 013802 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSN---W----SPFAPNGFKEILTGATVVFFAYVGFDAVANS 281 (436)
Q Consensus 209 ~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~ 281 (436)
+.+|++|.|..++++.+...++++.++++++.++...+.+. + .++.+.....++.+.....|+|.|+|.++++
T Consensus 156 ~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 235 (475)
T TIGR03428 156 TVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGEL 235 (475)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 99999999999999999999998887777666554332111 1 1111222345777888899999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCChHHHHH-HHcChhHHHHHHHHHHHHHHHHHHH
Q 013802 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LDEDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLL 358 (436)
Q Consensus 282 ~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 358 (436)
+||+|||+|++||++..+..++.++|.+..+......+..+ ...+++...++ +..+.++.. .+....+++.+++.+
T Consensus 236 aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~ 314 (475)
T TIGR03428 236 SEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTL 314 (475)
T ss_pred HHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888777776555321 11222233334 334545544 444556778889999
Q ss_pred HHHHHHHHHHHHhhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHhhh--CHHH---HHHHHHHHHHHHHHHHh
Q 013802 359 VGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--NVRV---LSHILSVGTLVGHSQFL 430 (436)
Q Consensus 359 ~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~y~~~~ 430 (436)
+...+.||++|++||||.+| ++|+|+|+|+++|++|+++..+++.++.++. +... +.++.+....+.|++..
T Consensus 315 ~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~ 393 (475)
T TIGR03428 315 AIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVT 393 (475)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 5999999888999999999999998777764 3344 44445555555666544
No 24
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-47 Score=374.71 Aligned_cols=363 Identities=36% Similarity=0.580 Sum_probs=304.7
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCC-CchhhhhH
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAY 131 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~-Gg~y~~~~ 131 (436)
+++++|+++.+|+.++++|.++|+|+|+..+..+..+||. .+++++++++.+++.+++++|++.++|+ + ||.|.|.+
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~-~aGs~~~ya~ 103 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPV-SAGSFYTYAY 103 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccc-ccccceeeee
Confidence 3689999999999999999999999999999999888875 9999999999999999999999999999 7 99999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc---CCCcccCCCCccccccchhhHHHHHHHHHHH
Q 013802 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKE---NIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (436)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (436)
|..|+.+||.+||.|++.|++..++.+...+.++..+.+ .+.... ..+. ......++++.
T Consensus 104 ~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~-~~~~~~~~~~~~~----------------~~~~~~fla~~ 166 (554)
T KOG1286|consen 104 RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG-ASLIGILVDTVNP----------------GGWIPDFLAFI 166 (554)
T ss_pred eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-cccccccccCCCC----------------CccHHHHHHHH
Confidence 999999999999999999999999999999999999641 000000 1111 11222334444
Q ss_pred HHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC---------CCCCchHHHHHHHHHHHHHhh
Q 013802 209 TIVLCWG------VGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---------FAPNGFKEILTGATVVFFAYV 273 (436)
Q Consensus 209 ~~i~~~g------~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 273 (436)
..+|..| .|.....++++..+.++.+..+++.+....|+.+|.+ +.|.++.+++.+...+.|+|.
T Consensus 167 v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~ 246 (554)
T KOG1286|consen 167 LIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFI 246 (554)
T ss_pred HHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHh
Confidence 4444444 4555556666666666555555555666656555542 667779999999999999999
Q ss_pred hhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCC----hHHHHHHHcChhHHHHHHHH
Q 013802 274 GFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LDEDA----PLSDAFASRGLKYVSVLISF 347 (436)
Q Consensus 274 G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~i~~~ 347 (436)
|+|.++..+||.|||+|++|+|+..++.++.++|++..+.+.+.+|.++ +..+. |+....+..+.+.+..++++
T Consensus 247 G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna 326 (554)
T KOG1286|consen 247 GFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNA 326 (554)
T ss_pred hHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhH
Confidence 9999999999999999999999999999999999999999999999988 66554 45444455555566679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCH------HHHHHHHHHH
Q 013802 348 GAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNV------RVLSHILSVG 421 (436)
Q Consensus 348 ~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 421 (436)
+++++..++.|+.+++.+|.+++|||||.+||+|+++||+ |+|++|+++..+++.+..+..+. +++.++.+++
T Consensus 327 ~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~ 405 (554)
T KOG1286|consen 327 GILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIG 405 (554)
T ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999998 99999999999999888888766 9999999999
Q ss_pred HHHHHHHHhhHhHc
Q 013802 422 TLVGHSQFLPLIYL 435 (436)
Q Consensus 422 ~~~~y~~~~~~~~l 435 (436)
+++.|.+++.+++.
T Consensus 406 tl~~w~~i~~~~i~ 419 (554)
T KOG1286|consen 406 TLFAWTLVALSHLR 419 (554)
T ss_pred HHHHHHHHHHHHee
Confidence 99999999988764
No 25
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=3.3e-45 Score=361.69 Aligned_cols=341 Identities=21% Similarity=0.310 Sum_probs=290.5
Q ss_pred HHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHHHHHHHHH
Q 013802 69 IGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLML 148 (436)
Q Consensus 69 ~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~ 148 (436)
+++|+++|+|+|..++...+.+||.++++|++++++.++.+++++||++++|+ +||.|.|++|.+||.+||.+||.+++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPD-TGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 013802 149 DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTV 228 (436)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 228 (436)
++....+......+.++... .| ..+. .+++.+++++.+.+|++|+|..+++|.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~---~~----~~~~----------------~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~ 137 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSW---VP----GIPI----------------WLFSLVITLALTGSNLLSVKNYGEFEFWLAL 137 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhc---cc----cCcH----------------HHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 99988887776665554442 11 1222 4677888888999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccc-------ccC----C--CCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHH
Q 013802 229 VKVIIVIVVIFAGAFEVD-------VSN----W--SPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295 (436)
Q Consensus 229 ~~i~~~~~~~i~~~~~~~-------~~~----~--~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~a 295 (436)
+|++.++.+++.++.... ..+ + .++.|+++.++..++....|+|.|+|.+++++||+|||+|++||+
T Consensus 138 ~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPra 217 (446)
T PRK10197 138 CKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRA 217 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHH
Confidence 999988887776554211 011 1 123356777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCC--CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013802 296 ILGSLLICAALYVGVSLVLTGMVPYKFLDE--DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (436)
Q Consensus 296 i~~~~~~~~v~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 373 (436)
+..+...+.++|++..++.....|.++.+. ..++..+.+..++++...++++..+++.+++.++++++.+|+++++||
T Consensus 218 i~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ar 297 (446)
T PRK10197 218 TNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSR 297 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999888888776443 346677788888899888999999999999999999999999999999
Q ss_pred cCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 374 DGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 374 d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
||.+|++|+|+|| +|+|++|++++.+++.+..+.. .++.+.++.+...++.|.+++...+
T Consensus 298 dg~lP~~~~~~~~-~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i 363 (446)
T PRK10197 298 RGDAPAVMGKINR-SKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQL 363 (446)
T ss_pred CCCcCHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999996 5999999999987776555442 3577778888888888998776554
No 26
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=344.27 Aligned_cols=357 Identities=25% Similarity=0.400 Sum_probs=323.8
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHH
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (436)
++++++|.++.+|..++++|+.||+|+|...+...+.+||+.++++++++++.+.+.-.+.||...-|+ .|++.+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPV-SGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
.+||+.||.+||.||+.|+....+...+.+.|++.++. ..|.| +.++++.++...+|
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP-------~vP~W----------------v~al~~~~l~~~~N 142 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP-------DVPQW----------------VFALAAVVLLLAVN 142 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCcHH----------------HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999654 56777 46788889999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-----------cccCCC---CCCCCchHHHHHHHHHHHHHhhhhHHH
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-----------DVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAV 278 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (436)
..++|..+..+..+..+|++.++.+++.++... +.+|+. +++|+|+.+++.++...+|+|.|.|.+
T Consensus 143 L~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElv 222 (462)
T COG1113 143 LISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELV 222 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999988875521 122221 477999999999999999999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q 013802 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLKYVSVLISFGAVAGLTTTL 357 (436)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 357 (436)
...++|.|||+|.+|||+-.......++|+...+++...+|.++..+ .+|+...++..|.++...++++..+.+.+++.
T Consensus 223 GitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~ 302 (462)
T COG1113 223 GITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSAL 302 (462)
T ss_pred HHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcc
Confidence 99999999999999999999999999999999999999999998765 57999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHHHHHHHHhh
Q 013802 358 LVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLVGHSQFLP 431 (436)
Q Consensus 358 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~~~~~ 431 (436)
|+.+++.+|+++.+|+||..||.++|+||+ ++|.+|++++.+...+-.++. .++.+.+..+.+.+..|++++.
T Consensus 303 NSglystsRmL~~la~~g~APk~~~klsk~-gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~ 381 (462)
T COG1113 303 NSGLYSTSRMLYSLAKQGDAPKAFAKLSKR-GVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILL 381 (462)
T ss_pred cccccccchHHHHHhhcCcccHhHhhcccc-CCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 999999999887776555544 3566667777778888888776
Q ss_pred HhH
Q 013802 432 LIY 434 (436)
Q Consensus 432 ~~~ 434 (436)
+.+
T Consensus 382 s~l 384 (462)
T COG1113 382 SQL 384 (462)
T ss_pred HHH
Confidence 654
No 27
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1e-44 Score=362.75 Aligned_cols=353 Identities=19% Similarity=0.272 Sum_probs=290.4
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhch
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (436)
||+++.+|+..++++.++|+|+|..++...+.+||. .+++|++++++.++.+++++||++++|+.+||+|.|+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 588999999999999999999999999999999986 7999999999999999999999999995256788899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 013802 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (436)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (436)
.+||.+||.+++++....+......+.++... .+ ..+. .....++.++...+|++|.
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~----------------~~~~~~~~~~~~~in~~gv 137 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYW---TD----KVNP----------------AVWIAIFYVFIVIINLFGV 137 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CC----CCCH----------------HHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999888888877776542 11 1111 1222345667789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcc--cc--------cCC---CCCCCC----chHHHHHHHHHHHHHhhhhHHHh
Q 013802 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEV--DV--------SNW---SPFAPN----GFKEILTGATVVFFAYVGFDAVA 279 (436)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~--------~~~---~~~~~~----~~~~~~~~~~~~~~~~~G~e~~~ 279 (436)
|..+++|.+...+|+..++.+++.++... +. .++ ..+.+. .+.++..++....|+|.|+|.++
T Consensus 138 ~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~ 217 (478)
T TIGR00913 138 KGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVA 217 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHH
Confidence 99999999999988877776666544321 10 111 112222 25678889999999999999999
Q ss_pred hhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccc--cC--------CCChHHHHHHHcChhHHHHHHHHHH
Q 013802 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF--LD--------EDAPLSDAFASRGLKYVSVLISFGA 349 (436)
Q Consensus 280 ~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (436)
+++||+|||+|++||++..+..++.++|++..++.....|.++ +. .++|+....+..+.++...++.+..
T Consensus 218 ~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 297 (478)
T TIGR00913 218 LTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVI 297 (478)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHH
Confidence 9999999999999999999999999999999888877777654 21 1267777778888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHH
Q 013802 350 VAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTL 423 (436)
Q Consensus 350 ~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 423 (436)
+++.+++.++.+++.+|+++++||||.+|++|+|+|| +++|++|++++.+++.+..+.. .++.+.++.+...+
T Consensus 298 ~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~-~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~ 376 (478)
T TIGR00913 298 LISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVDR-RGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGF 376 (478)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996 5999999999998876544332 24566777777888
Q ss_pred HHHHHHhhHhH
Q 013802 424 VGHSQFLPLIY 434 (436)
Q Consensus 424 ~~y~~~~~~~~ 434 (436)
+.|++.+...+
T Consensus 377 i~y~~~~~~~i 387 (478)
T TIGR00913 377 FTWMCICLSHI 387 (478)
T ss_pred HHHHHHHHHHH
Confidence 88888776554
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=1.2e-44 Score=360.36 Aligned_cols=356 Identities=21% Similarity=0.323 Sum_probs=292.7
Q ss_pred cccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCC-CchhhhhHHHhch
Q 013802 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTAFNE 136 (436)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~-Gg~y~~~~~~~g~ 136 (436)
|+++++++.++.+++++|+|+|..++...+.+|+. .+++|+++++..++.+++++|+++++|+ + ||.|+|++|.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~-~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPE-LDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhhHHhHcCc
Confidence 68999999999999999999999999999889986 8999999999999999999999999998 6 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 013802 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (436)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (436)
..||..||.+|++++.....+......++.. .+|.+....+ ....+...++++.+..+|.+|.
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~--------------~~~~~~~~~~~~~~~~ln~~Gv 142 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGY---FFPIFGGGNN--------------PPSIIGASVLLWCVHFLVLRGV 142 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccccCCCc--------------HHHHHHHHHHHHHHHHHHHhCH
Confidence 9999999999999888776666555555544 2232111100 1113455666777889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC--C--------CCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhc
Q 013802 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP--F--------APNGFKEILTGATVVFFAYVGFDAVANSAEESK 286 (436)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (436)
|..+++|.+....|+++++.+++.++...+.+++.+ + .++.+.++..++....|+|.|+|.+.+++||.|
T Consensus 143 ~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k 222 (468)
T TIGR03810 143 EGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAE 222 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhcc
Confidence 999999999999999988888776655333222211 0 112244566788899999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CCh-HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAP-LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364 (436)
Q Consensus 287 ~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 364 (436)
| +||+||++..+...+.++|++..++.....|.+++.. ++| ...++++..+++...++.+..+++.+++.++++.+.
T Consensus 223 ~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~ 301 (468)
T TIGR03810 223 K-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLP 301 (468)
T ss_pred C-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 7999999999999999999999999888888877643 445 666777777888889999999999999999999999
Q ss_pred HHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh-----CHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 365 SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 365 sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
+|+++++||||.+|++|+|+|| +++|.++++++.+++.++.++. .++.+.++.+...++.|.+.+...+
T Consensus 302 sR~~~a~ardg~lP~~f~k~~~-~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~ 375 (468)
T TIGR03810 302 AEIPLLMAKDKLMPKYFGKENA-NGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQV 375 (468)
T ss_pred HHHHHHHHhCCCccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 5999999999988886655432 4667778888888888988765443
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=8.4e-45 Score=380.56 Aligned_cols=368 Identities=17% Similarity=0.189 Sum_probs=301.0
Q ss_pred CCCCcccccchhHHHHHH-hhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhh-CcCCCCchhhh
Q 013802 53 DGEGLLRRLGLFELVLIG-VGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASR-FPAVVGGAYLY 129 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~-i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~-~p~~~Gg~y~~ 129 (436)
++++.+|++++++.+.+. +++++|+|+|..++++.+.+|.. +++.|+++++++++++++++|++++ +|+ +||.|+|
T Consensus 70 ~~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~-aGG~Y~y 148 (953)
T TIGR00930 70 KPPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK-GGGAYYL 148 (953)
T ss_pred CCCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccHHHHH
Confidence 344567899999999887 99999999999999999999986 8999999999999999999999999 999 9999999
Q ss_pred hHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHH
Q 013802 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (436)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (436)
++|.+||.+|+.+||++++++.+..+.++.++++++..++...... ...++ .....+++.+++++++
T Consensus 149 isralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~-~~~~~------------~~~~~iia~i~l~ll~ 215 (953)
T TIGR00930 149 ISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK-IMVDP------------INDIRIYGTVTVVVLL 215 (953)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccCc------------cccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864310000 00000 0112578889999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-----------c----cCCCCCCCCchHHHHHHHHHHHHHhhh
Q 013802 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-----------V----SNWSPFAPNGFKEILTGATVVFFAYVG 274 (436)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~G 274 (436)
.+|+.|+|..+|+|.++.+++++.++.+++.++.... . .|+.+..+.+..++...+...+++|+|
T Consensus 216 ~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tG 295 (953)
T TIGR00930 216 GISFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTG 295 (953)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888887776543211 0 111111122322367777778889999
Q ss_pred hHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-CCh------------------HHHH---
Q 013802 275 FDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-DAP------------------LSDA--- 332 (436)
Q Consensus 275 ~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~------------------~~~~--- 332 (436)
+|+.++++||+|||+|++||+++.++.+++++|++..+++..+.+.+.... +.. ....
T Consensus 296 i~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~ 375 (953)
T TIGR00930 296 ILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMN 375 (953)
T ss_pred HHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcc
Confidence 999999999999999999999999999999999999988877776544321 100 0011
Q ss_pred -HHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHhh
Q 013802 333 -FAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (436)
Q Consensus 333 -~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 408 (436)
+.. ........++.+.++++++++.++++.+++|+++++||||.+| ++|+|+|+|+++|++|++++.+++.++.++
T Consensus 376 ~~~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili 455 (953)
T TIGR00930 376 NLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILI 455 (953)
T ss_pred hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 111 1112245688889999999999999999999999999999999 899999988899999999999999999999
Q ss_pred hCHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 409 FNVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 409 ~~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
.+++.+..+.+..+++.|+++....+
T Consensus 456 ~~l~~ia~lis~~fLl~Y~lvnla~~ 481 (953)
T TIGR00930 456 AELNTIAPIISNFFLASYALINFSCF 481 (953)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999886654
No 30
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=9.4e-44 Score=355.91 Aligned_cols=369 Identities=18% Similarity=0.223 Sum_probs=288.2
Q ss_pred CCCCCCcccccchhHHHHHHhhhh-hcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhh
Q 013802 51 TNDGEGLLRRLGLFELVLIGVGAS-VGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128 (436)
Q Consensus 51 ~~~~~~~~r~l~~~~~~~~~i~~~-ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~ 128 (436)
.+++++++|+++.++.+.++++.+ ...|++...+.....+||. .+++|++++++.++.+++++||++++|+ +||.|+
T Consensus 4 ~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~Gg~y~ 82 (482)
T TIGR00907 4 LGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SGGQYF 82 (482)
T ss_pred cCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-CccHHH
Confidence 568889999999999999999855 2378888777788889985 8999999999999999999999999999 999999
Q ss_pred hhHHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHH
Q 013802 129 YAYTAFN----ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204 (436)
Q Consensus 129 ~~~~~~g----~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (436)
|++|.+| +..+|++||.+++++....+......++++...+.+.. ..+.|.... .....+.+++
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~i~~~~ 150 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTT----PGREYIPTR--------WHIFGIMIGI 150 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCccccC--------chhhhhHHHH
Confidence 9999876 57799999999999999988888888888877543110 001121111 1124566777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccc---------cCCC----CCCCCchHHHHHHHHHHHHH
Q 013802 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV---------SNWS----PFAPNGFKEILTGATVVFFA 271 (436)
Q Consensus 205 ~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~ 271 (436)
+++.+.+|.+|.|..++++.+..+++++.++++.+..+...+. +++. ++.+.++ .++.++....|+
T Consensus 151 ~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fs 229 (482)
T TIGR00907 151 HLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWS 229 (482)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHH
Confidence 8889999999999999999999888887777554443332111 1111 1223333 567777788999
Q ss_pred hhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccc-cccc-C--CCChHHHHHHH-cChhHHHHHHH
Q 013802 272 YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVP-YKFL-D--EDAPLSDAFAS-RGLKYVSVLIS 346 (436)
Q Consensus 272 ~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~-~~~~-~--~~~~~~~~~~~-~~~~~~~~i~~ 346 (436)
|.|+|.+++++||+|||+|++||++..++.+..+++++..+......+ .+++ + .++|+.+++.. .+.++...++.
T Consensus 230 f~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~ 309 (482)
T TIGR00907 230 MTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLL 309 (482)
T ss_pred hcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHH
Confidence 999999999999999999999999999999888776655555544433 2222 2 12588888765 46557777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHhhh-----CHHHHHHHHH
Q 013802 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILS 419 (436)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~ 419 (436)
+..+++.+++.++++.+.||+++++||||.+| ++|+|+|+|+++|++|++++.+++.++.++. .++.+.++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~ 389 (482)
T TIGR00907 310 CLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCT 389 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888999999999999999999999999999 9999999988999999999999988777664 4566667777
Q ss_pred HHHHHHHHHHhhHh
Q 013802 420 VGTLVGHSQFLPLI 433 (436)
Q Consensus 420 ~~~~~~y~~~~~~~ 433 (436)
.+..+.|++.+.+.
T Consensus 390 ~~~~i~y~~~~~~~ 403 (482)
T TIGR00907 390 VALDVSYVIPIICK 403 (482)
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888766544
No 31
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=2e-41 Score=334.93 Aligned_cols=351 Identities=32% Similarity=0.561 Sum_probs=295.2
Q ss_pred cchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHH-HHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHH
Q 013802 61 LGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (436)
Q Consensus 61 l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~-~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g 139 (436)
+++|+.+.++++.++|+|++..+ ..+.+|+..++.|++++++. ++.+++|+|+++++|+ +||.|.|++|.+||.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPS-AGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-STTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-cCeeeehhhhcccccch
Confidence 58999999999999999988877 66668888888899988887 8999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhH
Q 013802 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (436)
Q Consensus 140 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 219 (436)
+..+|.+++.+....+..+..+.+++...++ + ..+++ +....++++++++..+.+|++|.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~-----------~~~~~~i~~~~~~~~~~l~~~g~~~~ 140 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFG--P----DLNPS-----------PWPQFLIAIILILLFTLLNLLGIKLS 140 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--G----GGTCS-----------HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccc--c----ccccc-----------cchheeeeecccccceEeeechhhhh
Confidence 9999999999999998888888888866432 1 11111 11236788889999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhhhcccccC-------CCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCC
Q 013802 220 SVLNSCMTVVKV-IIVIVVIFAGAFEVDVSN-------WSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (436)
Q Consensus 220 ~~~~~~~~~~~i-~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~ 291 (436)
+|++.+...+++ ..++++++.++...+.+. .....++++..++.++...+|+|.|+|.+++++||.|| |+
T Consensus 141 ~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ 218 (426)
T PF13520_consen 141 GKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KT 218 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HH
T ss_pred hhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hh
Confidence 999999999999 576677666666543222 12344556667889999999999999999999999777 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC----hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDA----PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (436)
Q Consensus 292 ~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 367 (436)
+||++..+.+++.++|++..++.....|+++....+ +....++..+++++..++.+..+++.+++.++.+.+.+|+
T Consensus 219 ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 298 (426)
T PF13520_consen 219 IPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRL 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhc
Confidence 999999999999999999999999999988765432 4666777777789999999999999999999999999999
Q ss_pred HHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh------CHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 368 YLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF------NVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 368 l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
+++++|||.+|++|+|+| |+++|++++++..+++.++.++. +.+.+.++.+......|.+.....+
T Consensus 299 l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 370 (426)
T PF13520_consen 299 LYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVL 370 (426)
T ss_dssp HHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 57999999999999996665432 4678888888888888888765544
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-40 Score=327.69 Aligned_cols=364 Identities=37% Similarity=0.554 Sum_probs=308.5
Q ss_pred CCCCcccccchhH-HHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhH
Q 013802 53 DGEGLLRRLGLFE-LVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (436)
Q Consensus 53 ~~~~~~r~l~~~~-~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~ 131 (436)
++++++|+++.++ ...+.++.++|.|++..++.....+ +...+.|++++++..+.+++++|+++++|+ +||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS-AGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeeeehh
Confidence 4566789999999 8888998999999999988777666 555555999999999889999999999999 999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cCCCcccCCCCccccccchhhHHHHHHHHHHHHH
Q 013802 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFK-ENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (436)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (436)
+.+||..++.++|.+++++....+........++..... ... ...+. ....+++.++.++..+
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 147 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFP---GPGLLSIGP-------------LLIILIALALIALLTL 147 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cchhhcCCc-------------hHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888887777433 211 00110 2337888999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCC-----CCchHHHHHHHHHHHHHhhhhHHHhhhhhhh
Q 013802 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA-----PNGFKEILTGATVVFFAYVGFDAVANSAEES 285 (436)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (436)
+|.+|.|..++++.+..+++++.++.+.+.++.+.+.++..... ...+..++.++...+|+|.|+|.+++++||+
T Consensus 148 ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 227 (466)
T COG0531 148 LNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV 227 (466)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Confidence 99999999999999999999999999999887766554322111 1234468889999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC---ChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED---APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLY 362 (436)
Q Consensus 286 k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 362 (436)
|||+|++||++..+.+.++++|++..++.....+.+++... .|+.+......+.++..++.+..+.+.+++.+++..
T Consensus 228 knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~ 307 (466)
T COG0531 228 KNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWIL 307 (466)
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887655533 688888887777888999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh-----CHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 363 VQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-----NVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 363 ~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
+.+|.+++++|||.+|++|+|+|+|+++|.++++++.+++.++.+.. .++.+.++.+...++.|++.....+
T Consensus 308 ~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~ 384 (466)
T COG0531 308 AVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALL 384 (466)
T ss_pred HHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998899999999999998333332 2578888888888888988775543
No 33
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=2.5e-38 Score=315.73 Aligned_cols=357 Identities=21% Similarity=0.321 Sum_probs=257.8
Q ss_pred cccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHH-HHHHHHHHHhhhhCcCCCCchhhhhHHHhchh
Q 013802 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (436)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~-~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~ 137 (436)
||++.++...+.+..+++.. .. ...+..|+..+..|++++++. ++.+++++||++++|+ +||.|.|++|.+|+.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~--~~--~~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLR--GL--PAEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhh--cc--hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCceeeHhhhcChh
Confidence 46899999999887765422 22 234567888888899988865 6999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhh
Q 013802 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (436)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (436)
+|+..+|.+|+++.+..+......+..+.... +... ..+.. ..+......+.+++.++++.+|++|+|
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~---~~~~-~~~~~--------~~~~~~~~~~~l~~~~~~~~in~~gv~ 143 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIG---PEAT-VDESL--------AGNKLYVLVSVLFVYWLATFIALRGVA 143 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cccc-cCccc--------ccccHHHHHHHHHHHHHHHHHHhcChH
Confidence 99999999999998766554433333332211 1000 00000 001111234566667778899999999
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHhhhhhcc---ccc----CCCCCCCC--chHHHHHHHHHHHHHhhhhHHHhhhhhhhcC
Q 013802 218 ESSVLNSCMTVV-KVIIVIVVIFAGAFEV---DVS----NWSPFAPN--GFKEILTGATVVFFAYVGFDAVANSAEESKK 287 (436)
Q Consensus 218 ~~~~~~~~~~~~-~i~~~~~~~i~~~~~~---~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 287 (436)
..++++.+...+ ++++++++++.++... +.. ++.+..|+ ++..+... ...+|+|.|+|.++.++||+||
T Consensus 144 ~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 144 AFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccC
Confidence 999999987554 4454444444443321 111 11122222 22233222 2457899999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCh----HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 288 PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAP----LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (436)
Q Consensus 288 p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 363 (436)
|+|++||++..+..++.++|++..+++....|.++...+++ +.+..+..+.++...++.+...++.+++.++++.+
T Consensus 223 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~ 302 (474)
T TIGR03813 223 PDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAG 302 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887654333 33444555667777778888888899999999999
Q ss_pred HHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh----C----HHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 364 QSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF----N----VRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 364 ~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
.+|++++++|||.+|++|+|+|| +++|+++++++.+++.++.++. + ++.+.++.+...++.|++.+...+
T Consensus 303 ~sR~~~a~ardg~lP~~~~kv~k-~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i 380 (474)
T TIGR03813 303 PSSGMLAVAKAGYLPTFFQKTNK-NGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAI 380 (474)
T ss_pred HHHHHHHHhhcCCCCHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 6999999999998765544332 2 345556666667777887765543
No 34
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.9e-37 Score=309.88 Aligned_cols=356 Identities=19% Similarity=0.242 Sum_probs=254.3
Q ss_pred cccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHH-HHHHHHHHHHhhhhCc-CCCCchhhhhHHHh
Q 013802 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAA-SVLNALCYAELASRFP-AVVGGAYLYAYTAF 134 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~-~~~~~~~~~el~~~~p-~~~Gg~y~~~~~~~ 134 (436)
.+||++.++.+++.++.+. ++...+ ..+..|...+..|+++.++ .++.+++++||++++| + +||.|+|++|.+
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~--~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~-~GG~y~wv~~a~ 76 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP--TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWE-EGGIFAWVSNTL 76 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CCCeeeehhhcc
Confidence 3577999999999987775 333333 3556777777777777775 7899999999999997 8 899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 013802 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (436)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (436)
||.+||..+|.+|+.+....+............... .|.. ..+.| ...+..++++++++++|++
T Consensus 77 G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~--~~~~~-------------~~~i~~l~i~~~~t~~n~~ 140 (507)
T TIGR00910 77 GERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPAL--NEDPI-------------IKFIAALIIFWALAFSQFG 140 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cchh--ccCcH-------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999999998876554443222222222111 0100 11111 1245556677888999999
Q ss_pred hhhhHHHHHHHHHHHHHHH-HHHHHhhhhhccccc-------CCCCCCCCc-hHHHHHHHHHHHHHhhhhHHHhhhhhhh
Q 013802 215 GVGESSVLNSCMTVVKVII-VIVVIFAGAFEVDVS-------NWSPFAPNG-FKEILTGATVVFFAYVGFDAVANSAEES 285 (436)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~-~~~~~i~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 285 (436)
|.|..++++++.....++. ++++++.+....... +..++.|+. ..+.+..+....|+|.|+|.+++++||+
T Consensus 141 G~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~ 220 (507)
T TIGR00910 141 GTKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL 220 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc
Confidence 9999999999876544333 333333332221111 111222221 1133445555789999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHH----HHHcC--hhHHHHHHHHHHHHHHHHHHHH
Q 013802 286 KKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDA----FASRG--LKYVSVLISFGAVAGLTTTLLV 359 (436)
Q Consensus 286 k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~i~~~~~~~~~~~~~~~ 359 (436)
|||+|++||++..+.+++.++|.+..+++....|.+++...++.... ....+ ..+...++.+..+++.+++.++
T Consensus 221 knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~ 300 (507)
T TIGR00910 221 ENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIAS 300 (507)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888888876644433332 23333 2566777888888899999999
Q ss_pred HHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh---------CHHHHHHHHHHHHHHHHHHHh
Q 013802 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---------NVRVLSHILSVGTLVGHSQFL 430 (436)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~y~~~~ 430 (436)
++.+.+|+++++||||.+|++|+|+|| +++|.++++++.+++.++.++. .+..+.++.+...++.|++.+
T Consensus 301 ~i~~~sR~l~~~ardg~lP~~~~k~nk-~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~ 379 (507)
T TIGR00910 301 WIVGPSRGMFAAAQKGLLPAAFAKMNK-HEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFF 379 (507)
T ss_pred HHHHHHHHHHHhcccCCcCHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 5999999999999887655432 122334456667778888766
Q ss_pred hHhH
Q 013802 431 PLIY 434 (436)
Q Consensus 431 ~~~~ 434 (436)
..++
T Consensus 380 ~a~i 383 (507)
T TIGR00910 380 IGYF 383 (507)
T ss_pred HHHH
Confidence 4443
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2e-41 Score=338.81 Aligned_cols=350 Identities=29% Similarity=0.462 Sum_probs=289.6
Q ss_pred HHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHHHHH
Q 013802 66 LVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (436)
Q Consensus 66 ~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~ 144 (436)
+.++++++++|.|+|...+.....+|+ +.++++++++++.+.++.+++|+++++|+ +||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-AGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-ccchhhhhhhccCCcCCceeeH
Confidence 345678899999999999999999999 58999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCC-cccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 013802 145 QLMLDYHIGAASIARSLASYVVSILELFPFFKENIP-SWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLN 223 (436)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 223 (436)
.+++.+....+......+.+++..-. ++ ..+ .|... .++..++.+++..+|++|+|..++++
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~------------~~~~~i~~~~~~~l~~~gv~~~~~~~ 143 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGY-FP----GLPSTWVWG------------ILIAIIFILLITLLNLFGVRVSGKIE 143 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccc-cc----ccccccccc------------chhhhhhhhhhhhhhhhhhhccchHH
Confidence 99999999999888777776655300 11 233 33210 14577888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh-hh-cccccC--C---------CCCCCCc--------hHHHHHHHHHHHHHhhhhHHHhhhh
Q 013802 224 SCMTVVKVIIVIVVIFAG-AF-EVDVSN--W---------SPFAPNG--------FKEILTGATVVFFAYVGFDAVANSA 282 (436)
Q Consensus 224 ~~~~~~~i~~~~~~~i~~-~~-~~~~~~--~---------~~~~~~~--------~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (436)
.++..++++.++.+++.+ +. ..+.++ . .+..+++ +.+++.++..++++|.|+|.++.++
T Consensus 144 ~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a 223 (478)
T PF00324_consen 144 FILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILA 223 (478)
T ss_pred HHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhccccccccccccc
Confidence 999999999999888877 22 111111 1 1123333 7789999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC------ChHHHHHHHcChhHHHHHHHHHHHHHHHHH
Q 013802 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDED------APLSDAFASRGLKYVSVLISFGAVAGLTTT 356 (436)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 356 (436)
||+|||||++||++..++++.+++|++..++.....|.++.... +|+..+.+..+.+++..++++..+.+.+++
T Consensus 224 ~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~ 303 (478)
T PF00324_consen 224 EEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSS 303 (478)
T ss_pred ccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhh
Confidence 99999999999999999999999999999999998888875421 488888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhC------HHHHHHHHHHHHHHHHHHHh
Q 013802 357 LLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFN------VRVLSHILSVGTLVGHSQFL 430 (436)
Q Consensus 357 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~y~~~~ 430 (436)
.++.+++.||++++|+|||.+|+++.+.++|+|+|++|++++.+++++..+... ++.+.++.+...+..|.+++
T Consensus 304 ~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (478)
T PF00324_consen 304 ANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILIN 383 (478)
T ss_pred hhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhh
Confidence 999999999999999999999944444455579999999999999887776542 33455666666777777765
Q ss_pred hHh
Q 013802 431 PLI 433 (436)
Q Consensus 431 ~~~ 433 (436)
...
T Consensus 384 ~s~ 386 (478)
T PF00324_consen 384 ISY 386 (478)
T ss_pred hhh
Confidence 443
No 36
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=2.2e-36 Score=303.10 Aligned_cols=364 Identities=17% Similarity=0.212 Sum_probs=257.2
Q ss_pred cccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHH-HHHHHHHHHHHhhhhCcCCCCchhhhhHHHhc
Q 013802 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGA-ASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i-~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (436)
++|+++++++..+.++.++|.+. .......+|+..+..++++++ +.++.+++++||++++|+.+||.|+|+++.+|
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~---~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFAN---SPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCc---hHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 47889999999999999998652 233456788875555666555 46899999999999999526999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 013802 136 ELTAFLVFAQLMLDYHIGAASIARSLAS-YVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (436)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (436)
|.+|+..+|.++.++............. ......+ .. ..+.|...+ ........++++++.++++.+|.+
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~----~~~~~~~~~~a~~~~~~~t~vn~~ 152 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFG---KD--TTQTWHFLG----LNSTQVVGILAVIWMILVTFVASK 152 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cc--hhhhhhhhc----ccchHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999888877654333321111 1111111 00 011111000 001112234555666688999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh----hhhcc-cc---cCCCCCC---CCc---hHHHHHHHHHHHHHhhhhHHHhh
Q 013802 215 GVGESSVLNSCMTVVKVIIVIVVIFA----GAFEV-DV---SNWSPFA---PNG---FKEILTGATVVFFAYVGFDAVAN 280 (436)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~----~~~~~-~~---~~~~~~~---~~~---~~~~~~~~~~~~~~~~G~e~~~~ 280 (436)
|.|...+++++...+++...+++++. .+... +. .++.++. +.+ ..+++.++..+.|+|.|+|..++
T Consensus 153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999877765443222211 11111 11 0101111 111 13577788889999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-------CChHHHHHHHcC----------------
Q 013802 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-------DAPLSDAFASRG---------------- 337 (436)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------------- 337 (436)
++||+|||+|++||++..+..++.++|++..+.+....|.++... ..|+. ..+..+
T Consensus 233 ~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~ 311 (496)
T PRK15238 233 LVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLT 311 (496)
T ss_pred HHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhh
Confidence 999999999999999999999999999999888877777665432 11222 122211
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh--C----
Q 013802 338 -LKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF--N---- 410 (436)
Q Consensus 338 -~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~--~---- 410 (436)
+.++..++.+..+.+.+++.+++.++.+|.+++.+|||.+||+|+|+|| +|+|++|++++.+++.++.+.. .
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk-~g~P~~a~~~~~~i~~l~~~~~~~~~~~~ 390 (496)
T PRK15238 312 LGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNK-NGMPANAMWLQCIIVSVFILLVSFGGDAA 390 (496)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCc-CCCcHHHHHHHHHHHHHHHHHHHhCchhH
Confidence 2455556778888999999999999999999999999999999999996 6999999999998877654332 1
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 411 ---VRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 411 ---~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
++.+.++.+...++.|++++..++
T Consensus 391 ~~~f~~l~~l~~~~~li~y~~~~~a~i 417 (496)
T PRK15238 391 SAFFNILTLMANVSMTLPYLFLAGAFP 417 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888889999999999887765
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.96 E-value=1.5e-27 Score=232.14 Aligned_cols=338 Identities=14% Similarity=0.083 Sum_probs=264.7
Q ss_pred HHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHHHHHHHH
Q 013802 68 LIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLM 147 (436)
Q Consensus 68 ~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~ 147 (436)
.+.+++++|+|++..|....+.+++.++...+++++.+...+++++|+++++|+ +||.|.|.++.+||+.+++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-GASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 456788999999999998777666667778899999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 013802 148 LDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMT 227 (436)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 227 (436)
+.+.....++....++++...+.. ......+. .+..+++.+++..++.+|.|..+|++.+..
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~--~~~~~~~~----------------~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~ 144 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGE--YFGFPWSA----------------RAIVLIFTVLFGSFVWLSTSAVDRITRVLI 144 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHH--hcCCCccH----------------HHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 998888888888888887775431 11111111 345667777888999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccCCCCCC--CCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHH
Q 013802 228 VVKVIIVIVVIFAGAFEVDVSNWSPFA--PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAA 305 (436)
Q Consensus 228 ~~~i~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v 305 (436)
..++..++++++.++.+.+.+++.+.. +.++.++..++...+++|...+..+.+.+|.||++|++||++..+..++.+
T Consensus 145 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~ 224 (381)
T TIGR00837 145 FGKIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALV 224 (381)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 999999988888888877776665532 235667788888888888444568888999987799999999999999999
Q ss_pred HHHHHHHHHHhcccccccCC-------CChHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013802 306 LYVGVSLVLTGMVPYKFLDE-------DAPLSDAFAS-RGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLL 377 (436)
Q Consensus 306 ~y~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~l 377 (436)
+|++..+.....+|.+++.+ .+++.+..+. .++++...++.++..++..++.+++..+.++.+
T Consensus 225 lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l--------- 295 (381)
T TIGR00837 225 LYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYL--------- 295 (381)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 99999999999999888641 2455666655 567778888889999999999888877776443
Q ss_pred chhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHH-HhhHhH
Q 013802 378 PSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHSQ-FLPLIY 434 (436)
Q Consensus 378 P~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~ 434 (436)
++.+++.+++++ |..+.++..+...++....+...+.++...++...++. +.|.++
T Consensus 296 ~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~ 352 (381)
T TIGR00837 296 ADLFKFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALL 352 (381)
T ss_pred HHHhCCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 434444333323 66788888888888887776666677777776666444 445544
No 38
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.9e-29 Score=239.53 Aligned_cols=367 Identities=15% Similarity=0.171 Sum_probs=285.5
Q ss_pred cccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchh
Q 013802 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (436)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~ 137 (436)
|.=....++.-++.++.|.-+|....+++..+|.. .++..++.+++.+.++.+++.++++--.++||.|..++|.+||.
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPE 192 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPE 192 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCcc
Confidence 33445566777999999999999999999999987 88899999999999999999999997665799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhh
Q 013802 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (436)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (436)
+|-.+|.+++++..+..+.|+....+.+... ++|.......+-.. +..........+.+.+++++.+++.+.|+|
T Consensus 193 FGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Y--i~P~aaIf~~~~a~---~~~~am~nnlRvYGT~~Li~m~lIVf~GVK 267 (1075)
T KOG2082|consen 193 FGGAVGLCFYLGTTVAAAMYILGAVEIFLTY--IFPAAAIFGAEDAH---DEAAAMLNNLRVYGTVFLILMALIVFVGVK 267 (1075)
T ss_pred ccceeeehhhhhhHHHHHHHHHhHHHHHHHH--HccHhhhcCccccc---cchhhhhcceehHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887764 23332111110000 000011122378889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcc------------------------------cccC------------------
Q 013802 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEV------------------------------DVSN------------------ 249 (436)
Q Consensus 218 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~------------------------------~~~~------------------ 249 (436)
...++..++..+.++.++.+.+.++-.. +..|
T Consensus 268 ~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~ 347 (1075)
T KOG2082|consen 268 FVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSAT 347 (1075)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcc
Confidence 9999999999998888888777654310 0001
Q ss_pred ---------CC------C---------CC----------C---------C---------c-hHHHHHHHHHHHHHhhhhH
Q 013802 250 ---------WS------P---------FA----------P---------N---------G-FKEILTGATVVFFAYVGFD 276 (436)
Q Consensus 250 ---------~~------~---------~~----------~---------~---------~-~~~~~~~~~~~~~~~~G~e 276 (436)
.+ + ++ + + + -.+|..-+..-+.+.+|+-
T Consensus 348 c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGIm 427 (1075)
T KOG2082|consen 348 CDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIM 427 (1075)
T ss_pred cccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceee
Confidence 00 0 00 0 0 0 1134444455566899999
Q ss_pred HHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccc----cccCCC--ChHHHHHHHcChhHHHHHHHHHHH
Q 013802 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPY----KFLDED--APLSDAFASRGLKYVSVLISFGAV 350 (436)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~ 350 (436)
+.++.+++.|||+|++|.+.+.+.+.+..+|+...+.+..++.. |..+++ ..+......+-.| +++.+..+
T Consensus 428 aGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsP---wVi~IGsF 504 (1075)
T KOG2082|consen 428 AGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSP---WVIVIGSF 504 (1075)
T ss_pred ecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCc---eeeehhHH
Confidence 99999999999999999999999999999999999888877652 222210 1111111122233 47788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHH
Q 013802 351 AGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHSQ 428 (436)
Q Consensus 351 ~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 428 (436)
+|++++++.++.+++|+|++.|||+.+| +.|+|.+++ +.|.+|++++.+++-.-+++.+.+.+..+.++.+++.|.+
T Consensus 505 lST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~n-gEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~f 583 (1075)
T KOG2082|consen 505 LSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKAN-GEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLF 583 (1075)
T ss_pred HHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCC-CCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999998885 9999999999999999999999999999999999999999
Q ss_pred HhhHhH
Q 013802 429 FLPLIY 434 (436)
Q Consensus 429 ~~~~~~ 434 (436)
+.....
T Consensus 584 VNLaCa 589 (1075)
T KOG2082|consen 584 VNLACA 589 (1075)
T ss_pred HhHHHH
Confidence 875543
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.94 E-value=3e-26 Score=219.82 Aligned_cols=364 Identities=18% Similarity=0.204 Sum_probs=278.0
Q ss_pred ccchhHHHHHHhh-hhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchh
Q 013802 60 RLGLFELVLIGVG-ASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (436)
Q Consensus 60 ~l~~~~~~~~~i~-~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~ 137 (436)
+++.++.++.-.+ ++...=+|...+.++..+|.. .++-++++-.+.+.+.++.+.++++--.++||.|+.++|.+||.
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpE 145 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPE 145 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcc
Confidence 7777776644332 233334577888999999986 88888889999999999999999999877999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhh
Q 013802 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (436)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (436)
+|.-.|..++++.++.+++++..+.+-+.+-++ .-... ..+.+.+=++..+..+....+..+++.+.+.|..
T Consensus 146 fGGSIGllFf~anV~~~am~isG~vE~il~nfG---~~a~g-----~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsa 217 (945)
T KOG1288|consen 146 FGGSIGLLFFVANVFNCAMNISGFVEPILDNFG---KEAQG-----ASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSA 217 (945)
T ss_pred cCCeeeehhhHHHHhcchhhhhhhhHHHHHhcC---ccccC-----CcccccCCCCcchhhHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999998888554 11000 0001111122333467777888888888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCC------------------CCC-----------------CCCchHHHH
Q 013802 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW------------------SPF-----------------APNGFKEIL 262 (436)
Q Consensus 218 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~------------------~~~-----------------~~~~~~~~~ 262 (436)
..+|...++.....+.+..+.+-.+.....++. +++ ...+..+|-
T Consensus 218 lfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~ 297 (945)
T KOG1288|consen 218 LFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFA 297 (945)
T ss_pred HHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehh
Confidence 999998888776665555444443332211111 000 011122455
Q ss_pred HHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHH
Q 013802 263 TGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVS 342 (436)
Q Consensus 263 ~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (436)
..+.+.+-..+|.-+.++|++|.|+|+|.+||+.++++..+.+.|++..+++.+..|+..+..+. ..+..... -.
T Consensus 298 ~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy---~v~~~isl--~p 372 (945)
T KOG1288|consen 298 STFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDY---DVMMHISL--HP 372 (945)
T ss_pred hhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhch---hheeeccc--cc
Confidence 56666677889999999999999999999999999999999999999999999888887665542 22222211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q 013802 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSV 420 (436)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (436)
+++.+.++.+.+.+..+.+.++||++.++|||+.+| -.|+|...+.+-|+.|+.++.+++-++.++.+++.+..+.++
T Consensus 373 ~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~ 452 (945)
T KOG1288|consen 373 PFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITM 452 (945)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 355666777778888889999999999999999999 777887777789999999999999888888899999999999
Q ss_pred HHHHHHHHHhhHhHcC
Q 013802 421 GTLVGHSQFLPLIYLV 436 (436)
Q Consensus 421 ~~~~~y~~~~~~~~ll 436 (436)
.++++|..+....++|
T Consensus 453 ~FLlty~~vNLacl~L 468 (945)
T KOG1288|consen 453 TFLLTYGAVNLACLLL 468 (945)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988776654
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.94 E-value=1.5e-23 Score=202.24 Aligned_cols=288 Identities=17% Similarity=0.246 Sum_probs=239.2
Q ss_pred cccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhH
Q 013802 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELT 138 (436)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~ 138 (436)
.++|.+|...+.++.++|+|++..|+...+.+|+++|++++++++..++.+++++|+++++|+ . +.++|.++.+||+.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-~-~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-K-NFSEILSKYLGKIL 78 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-C-CHHHHHHHHhhHHH
Confidence 368999999999999999999999999999999999999999999999999999999999998 5 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhh
Q 013802 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE 218 (436)
Q Consensus 139 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 218 (436)
|+..+|.++.......+......++++.... .| ++|. .++...+.+.+...+..|.|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~----~tp~----------------~~~~l~~l~~~~~~~~~Gi~~ 136 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYL--LP----RTPI----------------IVIIILIIIVSIYIVRKGIEV 136 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC----CCCH----------------HHHHHHHHHHHHHHHHccHHH
Confidence 9999999988777777777777777776532 12 4444 346677777888899999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhhhhcccccCCCCCCCCchHHHHHHHH-HHHHHhhhhHHHhhhhhhhcCCCCChhHHH
Q 013802 219 SSVLNSCMTVVKVII-VIVVIFAGAFEVDVSNWSPFAPNGFKEILTGAT-VVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (436)
Q Consensus 219 ~~~~~~~~~~~~i~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (436)
.+|++.+...+++.. ++.+........+.+|..|..++|+.+.+.+.. ...|+|.|+|......+|.||| |+.||++
T Consensus 137 i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~ 215 (359)
T TIGR00912 137 LLRTAEILLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSI 215 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHH
Confidence 999999999888877 344444444555677888888888888888876 8899999999999999999997 5699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013802 297 LGSLLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLK----YVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (436)
Q Consensus 297 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (436)
..+..+++++|.+..++....+|+++.+. ..|..+..+....+ ....++....+.+.+.....+++..++.+.+.
T Consensus 216 ~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~ 295 (359)
T TIGR00912 216 IKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKL 295 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888764 67888888776433 33445555666677777777788888877764
No 41
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.90 E-value=1.8e-20 Score=180.42 Aligned_cols=344 Identities=14% Similarity=0.079 Sum_probs=250.2
Q ss_pred HHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHH------hhhhCcCCCCchhhhhHHHhchhHH
Q 013802 66 LVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAE------LASRFPAVVGGAYLYAYTAFNELTA 139 (436)
Q Consensus 66 ~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~e------l~~~~p~~~Gg~y~~~~~~~g~~~g 139 (436)
......++.+|+|++..|.. +|+..|+.++++.+++++..+.++. +.++.|. .+.++++++.+||..|
T Consensus 8 w~~~l~gt~IGaGiL~LP~~----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~--~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQ----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPC--EDITEVVEEHFGKNWG 81 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHcCHHHH
Confidence 44557778999999999985 4556788888888888877776666 4555554 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhH
Q 013802 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (436)
Q Consensus 140 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 219 (436)
.+.++.|++........+.....+.+.+.+. .....+.|++ .+..+++.+.+..++..|.|..
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~--~~~~~~~p~~---------------~i~~lilv~il~~iv~~G~~~i 144 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLV--NQLGTAPPLR---------------GLLSLALILILVAIMSFGEKLL 144 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCcHH---------------HHHHHHHHHHHHHHHHhcHHHH
Confidence 9999999999999988888877777776543 1111123322 3566777777789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccCCC--CCCCCchHHHHHHHHHHHHHhhhhHHHhhhh----hhhcCC---CC
Q 013802 220 SVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS--PFAPNGFKEILTGATVVFFAYVGFDAVANSA----EESKKP---QR 290 (436)
Q Consensus 220 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~----~E~k~p---~k 290 (436)
.|++.++...+++.++.+.+...++.|.++.. |...+.+...+.+++..+|+|.|+|.++.++ +|.+|| +|
T Consensus 145 ~r~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~ 224 (397)
T TIGR00814 145 FKIMGPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAER 224 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHH
Confidence 99999999999999999999999888877774 3223346779999999999999999999998 667655 47
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC----C-ChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 291 DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE----D-APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365 (436)
Q Consensus 291 ~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 365 (436)
+..|++..+..+..++|++..+.+....++++..+ + +.+....+...+++...+..++..++...+..+...+..
T Consensus 225 k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~ 304 (397)
T TIGR00814 225 KCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAR 304 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78899999999999999999999999999888532 1 223333456677888888888888888888888888888
Q ss_pred HHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 366 RLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-NVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 366 R~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
..+..+-++..-++. .+.|+| ..-.....+..+.++...... +.-.+.+-.+-......+++.|.+.
T Consensus 305 e~l~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~ 372 (397)
T TIGR00814 305 EGLNGIVLNSLKMKG-KKINIR-KLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYA 372 (397)
T ss_pred HHHHHHHHHHhcccc-cccCHH-HHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888887743211100 012221 111222233333343333333 4555555555556666666666654
No 42
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.8e-22 Score=189.78 Aligned_cols=354 Identities=18% Similarity=0.212 Sum_probs=281.6
Q ss_pred CCcccccchhHHHHH-HhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHH
Q 013802 55 EGLLRRLGLFELVLI-GVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYT 132 (436)
Q Consensus 55 ~~~~r~l~~~~~~~~-~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~ 132 (436)
.+.+-+++||+.++. ++-++.|.-+|...+++.+++|.. .++...++.+++..++++...++++-..++||.|..++|
T Consensus 24 ~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~ 103 (643)
T KOG2083|consen 24 TKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISR 103 (643)
T ss_pred cCCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEe
Confidence 344568999998876 555778999999999999999987 888899999999999999999999998879999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 133 AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 133 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
.+|+.+|...|..|.++..+.++.+...+++.+..++. ....+.. .-++.+..+++..+|
T Consensus 104 slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~-------~~s~~~i-------------~gi~~vt~~ill~i~ 163 (643)
T KOG2083|consen 104 SLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFE-------TESKEMI-------------DGIGSVTVLILLAIN 163 (643)
T ss_pred cccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-------hccHHHh-------------cchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999876 3333322 236777788888999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-c-------------cCCCCCCCCchHHHHHHHHHHHHHhhhhHHH
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-V-------------SNWSPFAPNGFKEILTGATVVFFAYVGFDAV 278 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (436)
..|+|+..|.|.++..+.++.+.-.++..+...+ . +|..+-..++ ..|+..+...+.+.+|.-+.
T Consensus 164 ~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~-~tfF~vf~vfFpaatgilaG 242 (643)
T KOG2083|consen 164 VAGVEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG-YTFFSVFAVFFPAATGILAG 242 (643)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC-CceEeeeeeecchhhhhhcc
Confidence 9999999999999998888777777766655321 0 1111111111 25677777788899999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-----CC----hHHHHHHHcC-hhHHHHHHHHH
Q 013802 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDE-----DA----PLSDAFASRG-LKYVSVLISFG 348 (436)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~-~~~~~~i~~~~ 348 (436)
.+++++.|+|++++|++...+......+|+....-.....-.+.++. .. .+.+-++... ...........
T Consensus 243 ~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AG 322 (643)
T KOG2083|consen 243 ANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAG 322 (643)
T ss_pred ccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhH
Confidence 99999999999999999999999999999988776664433333221 11 2222222221 12223456667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--hhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHH
Q 013802 349 AVAGLTTTLLVGLYVQSRLYLGLGRDGLLP--SIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGH 426 (436)
Q Consensus 349 ~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 426 (436)
...+.+++..+++.++.++++++.+|+..| .++.|-..+++.|.++..++...+..++.+.+.+-+..+.+...+..|
T Consensus 323 i~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~sy 402 (643)
T KOG2083|consen 323 ILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSY 402 (643)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhh
Confidence 777888888999999999999999999999 778877777889999999999999888888888888888888888888
Q ss_pred HHH
Q 013802 427 SQF 429 (436)
Q Consensus 427 ~~~ 429 (436)
.++
T Consensus 403 Ali 405 (643)
T KOG2083|consen 403 ALI 405 (643)
T ss_pred hcc
Confidence 765
No 43
>PHA02764 hypothetical protein; Provisional
Probab=99.87 E-value=3.4e-20 Score=163.90 Aligned_cols=276 Identities=19% Similarity=0.246 Sum_probs=178.9
Q ss_pred CCCCCcccccchhHHHHHHhhhhh-cchhhhchHHhh-hhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhh
Q 013802 52 NDGEGLLRRLGLFELVLIGVGASV-GAGIFVVTGTVA-RDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLY 129 (436)
Q Consensus 52 ~~~~~~~r~l~~~~~~~~~i~~~i-g~gi~~~~~~~~-~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~ 129 (436)
++.+++-|+.+.+|++...++.+- |.++ ..+.... ..-|...+++|+++++++++.+++++|+++++|+ +||.|.|
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPr-AGGdYVY 82 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPL-NGGDYAY 82 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCceEEE
Confidence 356789999999999999988773 3321 2122222 2234458999999999999999999999999999 9999999
Q ss_pred hHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHH
Q 013802 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLA-SYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (436)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (436)
.+|++||.+|+..||..|..+..+.+...-... +.. -.|.. ....-..-....
T Consensus 83 ISRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~------------i~~~~--------------~~f~~~~s~~~i 136 (399)
T PHA02764 83 IRTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFN------------IQNQF--------------EQFLIVESLFPI 136 (399)
T ss_pred hHHhhCccHHHHHHHHHHHHHHhhcchhhheeeeeee------------eHHHH--------------HHHHHHHHHHHH
Confidence 999999999999999999998887766432111 000 00110 011111122223
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccCCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhc
Q 013802 209 TIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESK 286 (436)
Q Consensus 209 ~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 286 (436)
..+...|.|..+|.-.++.....+ ..+....... ..++++- + .....++....-.|.=.|+..++++|.|
T Consensus 137 ~~~i~~~~~~~~~~v~il~~a~~i---~aif~~~~s~n~~~~~f~~--s---nt~~~a~~~~l~~~~fi~a~~y~~~ei~ 208 (399)
T PHA02764 137 VLLIIANKKIYAKIVDILAIAQII---IAIFIAFKSFNFQYQNFTI--S---NTLLSALLFDLSAFIFINAISYIAGEIK 208 (399)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHH---HHHHhhccceeEEEcceee--h---HHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 333445677777777665544433 1111122111 2222221 1 1455566666667777899999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 287 KPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSR 366 (436)
Q Consensus 287 ~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 366 (436)
|-+|....+.+.+...+.++-++.. ..+ .. +..+.+....++-....---.||
T Consensus 209 n~~k~~~~gyf~s~~~~~~~~ii~s--------y~n------~~-------------il~~~~~~w~~~y~~~~~~~~sr 261 (399)
T PHA02764 209 NIKKSSMIGYFVSYGIVAILSIIDS--------YSN------LN-------------ILFALMPIWFFSYMPIANKIQSR 261 (399)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHh--------hhh------HH-------------HHHHHHHHHHHhheeeecchHHH
Confidence 9999998888888777666554333 000 00 11111223333333333445799
Q ss_pred HHHHhhhcCCCchhhhhhcCCCCCch
Q 013802 367 LYLGLGRDGLLPSIFAKVHPKRHTPV 392 (436)
Q Consensus 367 ~l~~~a~d~~lP~~~~~~~~~~~~P~ 392 (436)
+.++|+.|+.+|++|+|.|| ++|+
T Consensus 262 li~~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 262 LIQTMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred HHHHHHhhhhchHHHhccCC--Ccee
Confidence 99999999999999999998 6787
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.85 E-value=6.7e-18 Score=163.05 Aligned_cols=345 Identities=16% Similarity=0.142 Sum_probs=261.1
Q ss_pred cccchhHHHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchh
Q 013802 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (436)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~ 137 (436)
|+-+.++...+..|+.+|+|++.+|-.... +|- ...+..++++.++...++.++|.+.+.|+ +.+.-..++|.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~-~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG-AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChH
Confidence 345678899999999999999999886544 554 58888899999999999999999999999 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhh
Q 013802 138 TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVG 217 (436)
Q Consensus 138 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 217 (436)
.+++.+..|.+-......+|....++.+.+.++. ..+.+.++ ......+.++...+...|.|
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~--~~~~~~~~----------------~~~~~~f~~i~~~iv~~g~~ 140 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGN--QLGTDLSP----------------WLSSLLFTIIFGGIVYFGTK 140 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH--hcCCCCcH----------------HHHHHHHHHHHHHHHHhhHH
Confidence 9999999999988888889999999988887651 11111222 34566677777778889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCC--CCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHH
Q 013802 218 ESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--APNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIG 295 (436)
Q Consensus 218 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~a 295 (436)
...|+++.+...+++.++.+.+..+++.+.++.... .+..+...+..++..+++|.-+..++.+.+..++-+|+++|+
T Consensus 141 ~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~a 220 (394)
T PF03222_consen 141 AVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKA 220 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHH
Confidence 999999999999999999999999998888776542 235677788999999999999999999999999777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccC----CC---ChHHHHHH-HcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 296 ILGSLLICAALYVGVSLVLTGMVPYKFLD----ED---APLSDAFA-SRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (436)
Q Consensus 296 i~~~~~~~~v~y~~~~~~~~~~~~~~~~~----~~---~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 367 (436)
+..+..+..++|++...++...+|+++.. ++ +++....+ ..++++...+..++.+++..++..+...+..+.
T Consensus 221 i~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~ 300 (394)
T PF03222_consen 221 IIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDF 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887642 22 23333443 356788888888888888888888777776666
Q ss_pred HHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHH--HHHHHHHHHHHHHHHHHhhHhH
Q 013802 368 YLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVR--VLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 368 l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
+...- .+.|++.+. .....+..+..+++.+..+.. ...++.+ ........+.|.++
T Consensus 301 l~d~~---------k~~~~~~~r-~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m 358 (394)
T PF03222_consen 301 LADLF---------KLKNNSSGR-LKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALM 358 (394)
T ss_pred HHHHH---------cCCccccch-HHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHH
Confidence 54432 221111121 234455566666666655322 2233333 22233444556554
No 45
>PRK10483 tryptophan permease; Provisional
Probab=99.83 E-value=2.5e-17 Score=157.49 Aligned_cols=351 Identities=12% Similarity=0.022 Sum_probs=260.6
Q ss_pred CCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHh
Q 013802 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (436)
Q Consensus 55 ~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (436)
...|++.+.++..++..|+.+|+|++..|-...+.+=..+....++.++++...++.+.|...++|+ +-+.-..+++.+
T Consensus 5 ~~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-g~~~~tma~~~L 83 (414)
T PRK10483 5 TTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-GSSFDTITKDLL 83 (414)
T ss_pred ccccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHc
Confidence 3457788999999999999999999998875544333458889999999999999999999999999 889999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 013802 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (436)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (436)
||.+..+.+.++.+-......+|....++.+.+.++ ..+.+.|+ ....+++.++...+.+.
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~---~~~~~i~~----------------~~~~llF~~~~~~iv~~ 144 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFA---EMSLNVPA----------------RAAGFGFALLVAFVVWL 144 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH---hcCCCCcH----------------HHHHHHHHHHHHHHHHh
Confidence 999888877788777777778888889998888654 11112233 35677888888899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCC---CCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCC
Q 013802 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFA---PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRD 291 (436)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~ 291 (436)
|.|...|+++++...+++.++..+...+.+.+.++..+.. +..+...+.+++..+++|.-+..++.+.++.++-.|+
T Consensus 145 gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~k 224 (414)
T PRK10483 145 STKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKT 224 (414)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHH
Confidence 9999999999999999999998888877777765553321 1223457789999999999999999999998865568
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccC----CCChHH---HHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAPLS---DAF-ASRGLKYVSVLISFGAVAGLTTTLLVGLYV 363 (436)
Q Consensus 292 ~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~----~~~~~~---~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 363 (436)
++|++..+..+..++|++...++...+|++++. +++... ... +..++++...+..++..++...+..+...+
T Consensus 225 ir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LG 304 (414)
T PRK10483 225 IVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLG 304 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987742 222222 233 335667777778888888888777766666
Q ss_pred HHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHH-HHHHhhHhHc
Q 013802 364 QSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVG-HSQFLPLIYL 435 (436)
Q Consensus 364 ~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~l 435 (436)
....+..+-|.+ +++.+. .....++++...++.+.+....+.++--.+.... +..+.|..++
T Consensus 305 L~d~l~D~~k~~---------~~~~~r-~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~ 367 (414)
T PRK10483 305 LFDYLADLFGFD---------DSAMGR-FKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLA 367 (414)
T ss_pred HHHHHHHHhCCC---------Cccccc-eeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555443211 111121 2234567777888887775555544444443333 4455566553
No 46
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.83 E-value=4.2e-17 Score=154.64 Aligned_cols=287 Identities=19% Similarity=0.297 Sum_probs=247.9
Q ss_pred ccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHH
Q 013802 60 RLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTA 139 (436)
Q Consensus 60 ~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g 139 (436)
|+|.+|...+.+...+|++++..|....+.+| ++|++.+++++..+...+.+..+.+++|+ ...+.+.++.+||+.|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~--~~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG--KTLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhCcHHH
Confidence 57899999999999999999999998888886 99999999999999999999999999998 8899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhH
Q 013802 140 FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGES 219 (436)
Q Consensus 140 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 219 (436)
...+..+.+.+....+.....+++.++..+- | ++|.| ++...+++.+......|.+..
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l--p----~TP~~----------------~i~~~~ll~~~y~a~~G~e~i 135 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLL--P----ETPIW----------------VIILLFLLVAAYAARKGIEVI 135 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C----cCCHH----------------HHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999998888532 3 66664 566777788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHH
Q 013802 220 SVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGS 299 (436)
Q Consensus 220 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~ 299 (436)
+|...+.....+..++.+........|.++..|..+.|+.+++.+.....+.|.|.|....+...+|||+ +..|....+
T Consensus 136 ~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~ 214 (320)
T PF03845_consen 136 ARVAEILFPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHH
Confidence 9999999888888888888888888889999999999999999999999999999999999999999975 578999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCC-CChHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013802 300 LLICAALYVGVSLVLTGMVPYKFLDE-DAPLSDAFASRGLK----YVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (436)
Q Consensus 300 ~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (436)
...+++++.+..+.....+++++... ..|..+..+...-+ .+..++....+...+......+++.++.+.++-
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f 292 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLF 292 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988876554 56888877665432 345556666666777777777888888777653
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.81 E-value=1.1e-16 Score=152.92 Aligned_cols=345 Identities=12% Similarity=0.073 Sum_probs=253.4
Q ss_pred chhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHH
Q 013802 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (436)
Q Consensus 62 ~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~ 141 (436)
+.....++..|+.+|+|++..|-...+.+=..+....++.++++...++.+.|...++|+ +-+.-..+++.+||.+..+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-GSSFNTITKDLIGNTWNII 88 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHHH
Confidence 667789999999999999998875544333458888999999999999999999999999 8899999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHH
Q 013802 142 VFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (436)
Q Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 221 (436)
.+..+.+-......+|....++.+.+.++. ......++ ....+.+.++...+.+.|.|...|
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~--~~~~~i~~----------------~~~~llF~~~~~~~v~~gt~~vd~ 150 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISM--NLGYHANP----------------RIVGICTAIFVASVLWISSLAASR 150 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhh--hccCCCcH----------------HHHHHHHHHHHHHHHHhchhHHHH
Confidence 888887777777788998999999886541 01111222 345688888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCC-C-c---hHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHH
Q 013802 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAP-N-G---FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (436)
Q Consensus 222 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (436)
.++++...+++.++..+....++.+.++..+... . + +...+.+++..+++|.-+..++.+....++-.|+.+|++
T Consensus 151 ~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaI 230 (415)
T PRK09664 151 ITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSV 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHH
Confidence 9999999999999888888888877766653211 1 1 335777899999999999999999999986667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccC----CCChHHH----HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 297 LGSLLICAALYVGVSLVLTGMVPYKFLD----EDAPLSD----AFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (436)
Q Consensus 297 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 368 (436)
+.+..+..++|++...++...+|++++. ++..... ..+...+++...+..++..++...+..+...+....+
T Consensus 231 l~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l 310 (415)
T PRK09664 231 VFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYL 310 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877742 2222222 2234566777777777777777777666555544444
Q ss_pred HHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHH-HHHHHhhHhHc
Q 013802 369 LGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLV-GHSQFLPLIYL 435 (436)
Q Consensus 369 ~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~~~~~l 435 (436)
..+-| +.+++.+ ......++++...++.+.++...+.++.-.+... .+..+.|.+++
T Consensus 311 ~D~~~---------~~~~~~~-r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~ 368 (415)
T PRK09664 311 ADLFK---------IDNSHGG-RFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLA 368 (415)
T ss_pred HHHhC---------CCCcccc-ceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322 1111112 2233456777888888877555555554444333 35556676653
No 48
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.81 E-value=1.7e-16 Score=150.82 Aligned_cols=318 Identities=15% Similarity=0.113 Sum_probs=235.0
Q ss_pred HhhhhhcchhhhchHHhhhhcCc--h-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHHHHHHH
Q 013802 70 GVGASVGAGIFVVTGTVARDAGP--G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQL 146 (436)
Q Consensus 70 ~i~~~ig~gi~~~~~~~~~~~G~--~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~ 146 (436)
.++.-+|+|.+..|......+|. . +.++|+++++..-..+++ ..|+ .||.|++.++.+||.+|++.+|..
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~-~gG~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALAL-VGGGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeee-cCCCHHHHHHHhChHHHHHHHHHH
Confidence 34445899999999988877774 3 788999999988887777 8899 999999999999999999999987
Q ss_pred HHHHH-HH----HHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHH
Q 013802 147 MLDYH-IG----AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSV 221 (436)
Q Consensus 147 ~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 221 (436)
++..- .. ++......+ +.. ++| .... .....+..+++..+..++++++.|...+
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~--i~p---~~~---~~~~-------------~~~l~i~siiff~i~~~l~~~~~k~~~~ 135 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG--IAP---LLH---SPTS-------------LLALFIFSLIFFAVVLLLSLNPSKLIDR 135 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH--HHh---ccC---cccc-------------hHHHHHHHHHHHHHHHHHHcCcccHHHH
Confidence 65433 22 233333322 222 111 1000 0111456677777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCch-HHHHHHHHHHHHHhh-------hhHHHhhhhh-hhcCCCCCh
Q 013802 222 LNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGF-KEILTGATVVFFAYV-------GFDAVANSAE-ESKKPQRDL 292 (436)
Q Consensus 222 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------G~e~~~~~~~-E~k~p~k~~ 292 (436)
+++++...+++.++.+++.++.+...+...+..+..- ..+..++....++++ |+-...++.+ |.|||+|+.
T Consensus 136 iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~ 215 (378)
T TIGR00796 136 VGKFLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKIT 215 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999987643222111111110 357888888889999 9999999999 999999999
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHhcccccccC----CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 293 PIGILGSL-LICAALYVGVSLVLTGMVPYKFLD----EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRL 367 (436)
Q Consensus 293 p~ai~~~~-~~~~v~y~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 367 (436)
|+.+..+. ......|+...++.....+.++.. .++.+.++.++..++.+..++.+...++++++.++...++++.
T Consensus 216 ~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~ 295 (378)
T TIGR00796 216 KYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEY 295 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 677777777888888776655433 3446666778888888999999999999999999988886544
Q ss_pred HHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHh
Q 013802 368 YLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHSQFL 430 (436)
Q Consensus 368 l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 430 (436)
|+|.++ +.|+++.++...+...+.....++.+.++...-..+.|=...
T Consensus 296 -------------f~~~~~--k~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i 343 (378)
T TIGR00796 296 -------------FHKLVP--KLSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAI 343 (378)
T ss_pred -------------HHHhcC--CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 445554 389998888887777666666888888876666555555443
No 49
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.80 E-value=3.3e-16 Score=150.60 Aligned_cols=341 Identities=16% Similarity=0.096 Sum_probs=252.1
Q ss_pred chhHHHHHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHH
Q 013802 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (436)
Q Consensus 62 ~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (436)
+.+...++..|+.+|+|++.+|-.... +|. ......++++.++...++.++|...+.|. +.+....++|.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~-~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG-VGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-DTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhChHHHH
Confidence 567788999999999999999886555 554 48888888888899999999999888888 788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHH
Q 013802 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (436)
Q Consensus 141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (436)
+....|.+.......+|....++.+.+.++ .+.....++ ....+.+.++...+.+.|.|...
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~--~~~~~~i~~----------------~~~~l~F~~~~~~iv~~g~~~v~ 143 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSIS--DWTGISMSP----------------TAGVLLFTLVAGGVVCVGTSSVD 143 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHH--HhccCCCCh----------------HHHHHHHHHHHHHHHhccHHHHH
Confidence 999999998888889999998888777553 111111122 23555666666668888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHH
Q 013802 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSL 300 (436)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~ 300 (436)
|+++++...+++.++.+.....++.+.+++... +.+....+.+++..+++|.-+..++.+....++.+|+++|++..+.
T Consensus 144 ~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs 222 (403)
T PRK15132 144 LFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGS 222 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHH
Confidence 999999999999988888888888887777532 1111237788999999999999999999999877788999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccC----CCC---hHHH-HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013802 301 LICAALYVGVSLVLTGMVPYKFLD----EDA---PLSD-AFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (436)
Q Consensus 301 ~~~~v~y~~~~~~~~~~~~~~~~~----~~~---~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (436)
.+..++|++...++...+|+++.. ++. +..+ +.+...+++...+..++..++...+..+...+....+..+-
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988642 222 3333 33446778888888888888888887777777776666654
Q ss_pred hcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHH-H-HHHHHHHhhHhH
Q 013802 373 RDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVG-T-LVGHSQFLPLIY 434 (436)
Q Consensus 373 ~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~y~~~~~~~~ 434 (436)
|.+. +++ + -.....+.++..+++.+.. .+.+......+ . ...++.+.|.++
T Consensus 303 ~~~~--------~~~-~-r~~~~~l~flppli~a~~~-P~~F~~al~~aG~~~ail~~ilP~~m 355 (403)
T PRK15132 303 QRRN--------TVG-G-RLQTGLITFLPPLAFALFY-PRGFVMALGYAGVALAVLALLLPSLL 355 (403)
T ss_pred ccCc--------ccc-C-CchhehhhHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 111 1 1233455666666666664 33333222222 2 233445556554
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.77 E-value=3.5e-15 Score=142.73 Aligned_cols=345 Identities=12% Similarity=0.051 Sum_probs=253.3
Q ss_pred HHHhhhhhcchhhhchHHhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHhhhhC-cCCCCchhhhhHHHhchhHHHHHHHH
Q 013802 68 LIGVGASVGAGIFVVTGTVARDAGP-GVTISFLLAGAASVLNALCYAELASRF-PAVVGGAYLYAYTAFNELTAFLVFAQ 145 (436)
Q Consensus 68 ~~~i~~~ig~gi~~~~~~~~~~~G~-~~~~~~ii~~i~~~~~~~~~~el~~~~-p~~~Gg~y~~~~~~~g~~~g~~~g~~ 145 (436)
....|+.+|+|++++|-.. +.+|. ...+..++++.++......++|..... |+ +.+.-..+++.+||.++.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~-g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~-~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRA-GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNP-SGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCHHHHHHHHcChhHHHHHHHH
Confidence 5577788999999998754 34554 478888888889999999999999999 55 66788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccc-CCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 013802 146 LMLDYHIGAASIARSLASYVVSILELFPFFKE-NIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNS 224 (436)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 224 (436)
|.+........|.....+.+.+.+. ...+. ..+. .+..+++.+.+..+...|.|...|++.
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~--~ql~~~~~~r----------------~l~slifv~~l~~iv~~G~~~v~kv~~ 165 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWE--NQLGFAPLNR----------------GFVALFLLLLMAFVIWFGKDLMVKVMS 165 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhcCcCCccH----------------HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9998888888888777776665322 11111 1111 467888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCCCC--------CCc-hHHHHHHHHHHHHHhhhhHHHhhhhhh----hc-----
Q 013802 225 CMTVVKVIIVIVVIFAGAFEVDVSNWSPFA--------PNG-FKEILTGATVVFFAYVGFDAVANSAEE----SK----- 286 (436)
Q Consensus 225 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E----~k----- 286 (436)
++...+++.++.+.+..+++.+.++..... ..+ ....+.+++..+++|.=...++.++.. .+
T Consensus 166 ~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~ 245 (443)
T PRK13629 166 YLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGR 245 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcccccc
Confidence 999999999999999999988877764321 111 134788889999999888888877776 42
Q ss_pred C-CCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC----CCCh-HHHHHHHcCh---------hHHHHHHHHHHHH
Q 013802 287 K-PQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD----EDAP-LSDAFASRGL---------KYVSVLISFGAVA 351 (436)
Q Consensus 287 ~-p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~---------~~~~~i~~~~~~~ 351 (436)
| .+|+..|++..+..+..++|++..+.+.+.++++++. ++.+ +....+...+ ++...+..++..+
T Consensus 246 ~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~ 325 (443)
T PRK13629 246 DFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALV 325 (443)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHH
Confidence 2 2477899999999999999999999999999998864 3445 5555665555 6778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC-CchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh-CHHHHHHHHHHHHHHHHHHH
Q 013802 352 GLTTTLLVGLYVQSRLYLGLGRDGL-LPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-NVRVLSHILSVGTLVGHSQF 429 (436)
Q Consensus 352 ~~~~~~~~~~~~~sR~l~~~a~d~~-lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~ 429 (436)
+...+..+...+.--.+..+.++.. -++ -.+.|+| ..-....++..+.+++...+. +.-.+.+..+-......+++
T Consensus 326 AI~TSFlGv~LGl~E~l~gl~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l 403 (443)
T PRK13629 326 AIFKSFFGHYLGTLEGLNGLILKFGYKGD-KTKVSLG-KLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCL 403 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccCHH-HHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHH
Confidence 8888888888888888888875321 110 0023332 223344455555555555554 45555565555566666667
Q ss_pred hhHhH
Q 013802 430 LPLIY 434 (436)
Q Consensus 430 ~~~~~ 434 (436)
.|.+.
T Consensus 404 ~P~y~ 408 (443)
T PRK13629 404 LPMYA 408 (443)
T ss_pred HHHHH
Confidence 67654
No 51
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.75 E-value=3.1e-15 Score=145.59 Aligned_cols=284 Identities=17% Similarity=0.160 Sum_probs=225.3
Q ss_pred CcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCC-CchhhhhHHH
Q 013802 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTA 133 (436)
Q Consensus 56 ~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~-Gg~y~~~~~~ 133 (436)
..+++-+..+.+....++.+|+|++..|- ....+|-. .+...++++.++....+++.|...+.|+ . .+.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~-a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPV-AFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-GKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhH-HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHH
Confidence 34566777888999999999999999887 44556654 8888889999999999999999999999 6 3999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHH
Q 013802 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (436)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (436)
+||.++++.+..+.+.......+|....++.+...++ ..++.+ + + ...+..+++...+..+..
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~--~~~~~~-~-~-------------~r~~~~lif~~~~~~l~~ 144 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLG--NQFGLN-P-L-------------PRKLGSLIFALVLAFLSW 144 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH--hhcccC-C-c-------------chHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888654 111111 1 1 115666777777777999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCC--C-CCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCC
Q 013802 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPF--A-PNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (436)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k 290 (436)
.|.+..-|.+..+...+++.++++.....++.+.++.... . +..+..++.+++..+++|.++...+.+..|+|+++|
T Consensus 145 ~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~ 224 (415)
T COG0814 145 LGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK 224 (415)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh
Confidence 9999999999999999999999999888888766655332 2 245668899999999999999999999999998877
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-------CCChHHHHH-HHcChhHHHHHHHHHHHHHHHHHHH
Q 013802 291 D-LPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-------EDAPLSDAF-ASRGLKYVSVLISFGAVAGLTTTLL 358 (436)
Q Consensus 291 ~-~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 358 (436)
+ ++|++..+..+..++|++..+....+++.+..+ +........ +....+.......+....+..++..
T Consensus 225 ~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFl 301 (415)
T COG0814 225 KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFL 301 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 7 999999999999999999999999888876321 122333333 3344555666666666666655533
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.49 E-value=7.4e-11 Score=112.70 Aligned_cols=292 Identities=18% Similarity=0.205 Sum_probs=193.7
Q ss_pred CcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCC------CCchhhh
Q 013802 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAV------VGGAYLY 129 (436)
Q Consensus 56 ~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~------~Gg~y~~ 129 (436)
+.++++|.++++..+++..+|.|-......+...+||+++...++.+++..++.++=.-|+.+|.++ .||+.+|
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yy 93 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYY 93 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHH
Confidence 3456899999999999999999988888889999999855555566677777777777788888753 2789999
Q ss_pred hHHHhch-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHH
Q 013802 130 AYTAFNE-LTAFLVFAQLMLDYHIG-AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (436)
Q Consensus 130 ~~~~~g~-~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (436)
.+|.+|+ +++.+.+.+...++... ........++.+...++ .|+ .+.++++.++
T Consensus 94 i~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~--------i~~----------------~~~gi~l~~l 149 (416)
T PF01235_consen 94 IEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG--------IPP----------------WITGIILAIL 149 (416)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc--------ccH----------------HHHHHHHHHH
Confidence 9999885 45555555544444333 34444444554444222 233 3567777888
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC---------CCCCch-HHHHHHHH---------HH
Q 013802 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---------FAPNGF-KEILTGAT---------VV 268 (436)
Q Consensus 208 ~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~---------~~ 268 (436)
+.++..-|.|..+++...+..++.+..++..+..+.. +.++.++ +.++.. .++..... =.
T Consensus 150 ~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg 228 (416)
T PF01235_consen 150 VALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARG 228 (416)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhh
Confidence 8888889999999999999999888877776655442 2222211 112211 12211111 12
Q ss_pred HHHh---hhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCCChHHHHHHHcChhHHH
Q 013802 269 FFAY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK---FLDEDAPLSDAFASRGLKYVS 342 (436)
Q Consensus 269 ~~~~---~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 342 (436)
+|+- .|.....|-+.|+++|.|+--.+++-.++-+.++..+..+.++..-..+ +.+...-...++++..+++..
T Consensus 229 ~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~ 308 (416)
T PF01235_consen 229 LFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGP 308 (416)
T ss_pred hccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHH
Confidence 3332 5777888888899999887666666666655555555555554332111 112222234455665567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013802 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (436)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (436)
.++.+++++..+++.+++.+..-|.+.-+.
T Consensus 309 ~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 309 YFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 899999999999999999999988888765
No 53
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.47 E-value=1.6e-10 Score=110.25 Aligned_cols=341 Identities=13% Similarity=0.135 Sum_probs=207.7
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch--HHHHHHHHHHHH---HHHHHHHHHhhhhCcCC----------
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG--VTISFLLAGAAS---VLNALCYAELASRFPAV---------- 122 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~--~~~~~ii~~i~~---~~~~~~~~el~~~~p~~---------- 122 (436)
++..+..+.+.=.+-.++|+|++..|. +...+|.. .+...+++.+.. ....-+..+++++..+.
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~-AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPL-AFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES 122 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChH-HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 445777777777777889999988777 55667753 344444444432 34455667777775320
Q ss_pred --CCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHH
Q 013802 123 --VGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINIL 200 (436)
Q Consensus 123 --~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (436)
.+|+- | .|.+||...+++-....+.+...+..|....++-+++.++ . ...+.+. ..+.
T Consensus 123 a~~~~~~-~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~---~--~~~~~~s-------------~~~~ 182 (449)
T KOG1304|consen 123 AMEGGPG-W-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVD---E--HSPGVLS-------------VRLY 182 (449)
T ss_pred HHcCCcH-H-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHh---c--cCCCCcc-------------HHHH
Confidence 12222 5 6788999999999999999999999999999998988655 1 0112221 1333
Q ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccCCCCCCCCchHHHHHHHHHHHHHhhhhHHH
Q 013802 201 APILLALLTIVL-CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWSPFAPNGFKEILTGATVVFFAYVGFDAV 278 (436)
Q Consensus 201 ~~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~ 278 (436)
..+.+.....++ .+-.|...-+..+.-++.++.++++..-.+.... .++...+ .++.++-..+.+++|+|-|...+
T Consensus 183 i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~--~~~~~~~lf~GtaifafEGig~V 260 (449)
T KOG1304|consen 183 ILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAV--TGWSGLPLFFGTAIFAFEGIGMV 260 (449)
T ss_pred HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc--cchhhhHHHHHHHHHHhccceEE
Confidence 333333333333 2344555545555545444444444433333222 1111111 23667888899999999999999
Q ss_pred hhhhhhhcCCCCChh---HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHH
Q 013802 279 ANSAEESKKPQRDLP---IGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTT 355 (436)
Q Consensus 279 ~~~~~E~k~p~k~~p---~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 355 (436)
--+-+++|+|+ ++| +.+-.++.+++++|...-+.-....+++.-++ +..+....++...+.+...+.++.
T Consensus 261 LPlEn~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s------ITLNLP~~~l~~~Vkl~~ai~I~l 333 (449)
T KOG1304|consen 261 LPLENSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS------ITLNLPQEILSQTVKLLLAIAIFL 333 (449)
T ss_pred EehhhcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce------EEecCCccHHHHHHHHHHHHHHHH
Confidence 99999999995 488 99999999999999988777777777554322 112222245555666666666666
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHh-hhCHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 356 TLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAG-LFNVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 356 ~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
+.--.++..-++++.- +.+++++ +|+.-.+..-=....+++.+++. +.+++.+.++.+......-.+++|.++
T Consensus 334 s~pLQ~yv~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~li 407 (449)
T KOG1304|consen 334 TYPLQFYVPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLI 407 (449)
T ss_pred cCchhhhhhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHH
Confidence 6556677777777753 2222321 11101111111122222222222 558999999998888777777777654
No 54
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.47 E-value=5.3e-11 Score=115.26 Aligned_cols=276 Identities=16% Similarity=0.101 Sum_probs=191.7
Q ss_pred CCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCc-----hhh
Q 013802 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGG-----AYL 128 (436)
Q Consensus 55 ~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg-----~y~ 128 (436)
...+|+-++++...-.++.++|.|++.+| ++....|.. .+...++.+++.+.++..+.+.-...|. -.| +-+
T Consensus 32 ~~~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~-~~~~r~~~Y~d 109 (437)
T KOG1303|consen 32 ITPSRGGSWWQAAFHIINALIGAGVLSLP-YALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEA-VPGKRRYRYPD 109 (437)
T ss_pred cccCCCCcceehhhheehhhhhhhhhhhH-HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccCCChHH
Confidence 34577799999999999999999988888 677778875 6888889999999888888888887777 556 556
Q ss_pred hhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHH
Q 013802 129 YAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALL 208 (436)
Q Consensus 129 ~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (436)
.+++++|++.-.++++...+.....+..+....++.+..+++.+.. +...... ....+++.++.
T Consensus 110 l~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~---~~~~l~~-------------~~f~iif~~i~ 173 (437)
T KOG1303|consen 110 LGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSL---NDNSLDK-------------QYFIIIFGLIV 173 (437)
T ss_pred HHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ccccccc-------------eehhhhHHHHH
Confidence 6677899877778888888888888888889999999886652211 1100000 11222222222
Q ss_pred HHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccccc--C---CCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhh
Q 013802 209 TIVL-CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVS--N---WSPFAPNGFKEILTGATVVFFAYVGFDAVANSA 282 (436)
Q Consensus 209 ~~i~-~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 282 (436)
.... ........+......+..+.......+.+..+.-.. . .....+.+.. +.++....|+|.|+-....+.
T Consensus 174 ~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~--f~a~g~iaFaf~gH~v~peIq 251 (437)
T KOG1303|consen 174 LPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTV--FTALGIIAFAYGGHAVLPEIQ 251 (437)
T ss_pred HHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcch--hhhhhheeeeecCCeeeeehH
Confidence 2222 334455555666666666555555555555543111 1 1111122211 678899999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHc-ChhHHHHHHHHHHHHHHHHHH
Q 013802 283 EESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASR-GLKYVSVLISFGAVAGLTTTL 357 (436)
Q Consensus 283 ~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~ 357 (436)
..+|+|+| ++|+...+..+++.+|+..++.-...++++..+ ++.... ...|.....++.+.+..+++.
T Consensus 252 ~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~ 320 (437)
T KOG1303|consen 252 HTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSY 320 (437)
T ss_pred hhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhh
Confidence 99999987 999999999999999999888887776643321 133333 356777788888888777764
No 55
>PLN03074 auxin influx permease; Provisional
Probab=99.44 E-value=4.1e-10 Score=111.54 Aligned_cols=239 Identities=11% Similarity=0.015 Sum_probs=137.0
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHH----HHhhhhCcCCCCch------
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCY----AELASRFPAVVGGA------ 126 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~----~el~~~~p~~~Gg~------ 126 (436)
.++-+..+...-.+.+.+|.|++.+|. +...+|.. ..+..++.++++.-++..+ -|...+.|+ .+-.
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~-Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~-~~~~~~~~~~ 120 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPY-SFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKER-EKVDFKNHVI 120 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHH-HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-CCCchhHHHH
Confidence 445566666666888889999988776 56667764 6666777676665555544 456666665 4422
Q ss_pred --hhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHH
Q 013802 127 --YLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204 (436)
Q Consensus 127 --y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (436)
.+-..+.+||.+..+.....++.....+..+....++-+.. +.+ ..+...|. ++..++
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~---l~~--~~~~~~~~---------------~i~~~v 180 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYY---IND--NLDKRTWT---------------YIFGAC 180 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhh---hCC--CcCCCeEE---------------eehHHH
Confidence 22233467888877765555544444444444443333322 111 00112221 121122
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhh
Q 013802 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEE 284 (436)
Q Consensus 205 ~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E 284 (436)
.+.+. -....|..+++..+.....+.....+.+......+...+....+.++..++.++..++|+|.|+-....+-.|
T Consensus 181 ~~~~~--~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~ 258 (473)
T PLN03074 181 CATTV--FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHA 258 (473)
T ss_pred HHHHH--HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence 22222 2333555555554444433333233333333332222222111234556777777899999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 013802 285 SKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (436)
Q Consensus 285 ~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~ 321 (436)
+|||+ ++++....+.......|+...+......+++
T Consensus 259 M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 259 MWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred ccChh-cccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 99995 5999988888888888887766655555543
No 56
>PTZ00206 amino acid transporter; Provisional
Probab=99.42 E-value=1.3e-09 Score=108.33 Aligned_cols=245 Identities=15% Similarity=0.143 Sum_probs=153.8
Q ss_pred chhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHH
Q 013802 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (436)
Q Consensus 62 ~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (436)
+..+..+-.+.+++|+|++..|. +.+.+|.. ..+..++.++++......+.+.+.+.+ .-.+.+.+++.+||+..+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~-Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~--~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPS-AANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN--IRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHHhCHHHHH
Confidence 44566666777789999998877 45567764 666666667776666666777666533 356667777789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHH
Q 013802 141 LVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESS 220 (436)
Q Consensus 141 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 220 (436)
++.+..++..+..+.++....++.+...+... ..+++....+ .+.. ......+.+.+-+...+..+..+
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~-----~~~~~~~~~~----~~r~--~~~~i~~~i~lPLs~~r~i~~L~ 206 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGT-----NAPDFLKQKS----GNRL--LTSLMWLCFMLPLVIPRHIDSLR 206 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----Cccchhhhcc----CcEE--eeeehhhhHhhhcccccchHHHH
Confidence 99999988888889999999999888755310 1111110000 0000 01111112222333345556666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccCCC----------C--CCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCC
Q 013802 221 VLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS----------P--FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKP 288 (436)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p 288 (436)
++..+.....+...+.+++........++.. + .++. ....+.++....|+|.++.......+|+|||
T Consensus 207 ~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~algi~~faF~~h~~~~~i~~~M~~~ 285 (467)
T PTZ00206 207 YVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNS-GNRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285 (467)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecC-chHHHhhhhHHHhhhhhhhhhHHHHHhhccc
Confidence 6655444333322222222222211111110 0 1111 1257788999999999999999999999986
Q ss_pred C-CChhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 013802 289 Q-RDLPIGILGSLLICAALYVGVSLVLTGMVPYK 321 (436)
Q Consensus 289 ~-k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~ 321 (436)
. |+..|....++.++.++|.+..+.-...++++
T Consensus 286 t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 286 SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 4 67889999999999999998888877766643
No 57
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.39 E-value=2.8e-09 Score=100.88 Aligned_cols=292 Identities=19% Similarity=0.255 Sum_probs=200.7
Q ss_pred CcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCC------Cchhhh
Q 013802 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVV------GGAYLY 129 (436)
Q Consensus 56 ~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~------Gg~y~~ 129 (436)
+.++.+|.+++++.+++..+|+|=......+...+||+++...++.+++...+.++=+-|+..|.++. ||+-+|
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 45778999999999999999999888888889999998444444456667777777777898887433 688899
Q ss_pred hHHHhc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHH
Q 013802 130 AYTAFN-ELTAFLVFAQLMLDYH-IGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (436)
Q Consensus 130 ~~~~~g-~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (436)
.++.+| |+.+.+.+....+++- ..+.......++.+...++ .|+ .+.++++.++
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~--------~~~----------------~~~gi~la~l 193 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG--------IPP----------------LVTGIVLALL 193 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC--------CcH----------------HHHHHHHHHH
Confidence 999988 5677777766666665 4677777888888877544 333 4678888889
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCC---------CCCCC----chH------HHHHHHHHH
Q 013802 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS---------PFAPN----GFK------EILTGATVV 268 (436)
Q Consensus 208 ~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---------~~~~~----~~~------~~~~~~~~~ 268 (436)
...+...|.|..+++......++.+..++..+..+.. +.+..+ .+.+. |+. .+..++.=.
T Consensus 194 ~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RG 272 (452)
T COG1115 194 VALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRG 272 (452)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999988877776655444332 111111 11111 111 122222223
Q ss_pred HHHh---hhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC--CCCh-HHHHHHHcChhHHH
Q 013802 269 FFAY---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAP-LSDAFASRGLKYVS 342 (436)
Q Consensus 269 ~~~~---~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~ 342 (436)
.|+- .|....++.+.+++||.|+--..+...++-+.++.....++++..-..+... +... ...++++..++++.
T Consensus 273 lfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~ 352 (452)
T COG1115 273 LFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGS 352 (452)
T ss_pred hhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHH
Confidence 4443 4566667777788899776555555555545555555555554432222221 2222 33455666777999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013802 343 VLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (436)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (436)
.++.+.+++..+++.+++++..-|.+.-+.
T Consensus 353 ~fv~i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 353 YFVAIALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988765
No 58
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.36 E-value=6.2e-09 Score=100.23 Aligned_cols=287 Identities=17% Similarity=0.245 Sum_probs=176.7
Q ss_pred cccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCC-C-----CchhhhhHH
Q 013802 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAV-V-----GGAYLYAYT 132 (436)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~-~-----Gg~y~~~~~ 132 (436)
+++|.++++...++..+|.|-......+...+||+++...+++.++...+.+.-.-++.++.++ + ||+-+|.++
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~ 124 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKK 124 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHH
Confidence 5699999999999999999844444445888999844344444555556666666677666631 2 344477777
Q ss_pred Hhc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHH
Q 013802 133 AFN-ELTAFLVFAQLMLDY-HIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (436)
Q Consensus 133 ~~g-~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (436)
.++ |++|.+.+.. .+.+ ...........++.++..+ ..|.| +.++++.++...
T Consensus 125 gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~--------~~~~~----------------v~~i~l~~l~~~ 179 (425)
T TIGR00835 125 GLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF--------NVPKL----------------VTGIVLTVLTAL 179 (425)
T ss_pred HhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc--------CCcHH----------------HHHHHHHHHHHH
Confidence 665 7778777766 4444 3344555566666665422 23333 456666777777
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC---------CCCCch-HHHHH---------HHHHHHHH
Q 013802 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---------FAPNGF-KEILT---------GATVVFFA 271 (436)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---------~~~~~~-~~~~~---------~~~~~~~~ 271 (436)
+..-|.|..+++......++....+...+.... .+.++..| +.++.. .++.. ++.=..|+
T Consensus 180 vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fS 258 (425)
T TIGR00835 180 IIFGGLKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFS 258 (425)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhc
Confidence 777799999999999999988887655443322 23333221 112111 11111 11122333
Q ss_pred h---hhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhccccc---ccCCCChHH-HHHHHcChhHHHHH
Q 013802 272 Y---VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYK---FLDEDAPLS-DAFASRGLKYVSVL 344 (436)
Q Consensus 272 ~---~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~i 344 (436)
- .|....+|-+.|++||.|+--.++.--++-+.++.....+.+...-..+ +++ +..+. .++++..+.++..+
T Consensus 259 NEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~-g~~lt~~af~~~~g~~g~~~ 337 (425)
T TIGR00835 259 NEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLS-GAQLTQQALSYGLGSFGAVF 337 (425)
T ss_pred cccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCc-HHHHHHHHHHHHhhhhHHHH
Confidence 3 5677777888889999876555555555544555544444443322112 111 12222 34455445678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013802 345 ISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (436)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (436)
+.+++++..+++.+++.+..-+.+.-+-
T Consensus 338 v~i~~~lFaftTii~~~yyge~~~~yl~ 365 (425)
T TIGR00835 338 VAVALFLFAFSTIIGWYYYGEKNAEFLK 365 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998888887764
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.14 E-value=2.3e-07 Score=84.30 Aligned_cols=265 Identities=18% Similarity=0.197 Sum_probs=169.8
Q ss_pred HHHHhhhhhcchhhhchHHhhhhcCc---hHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHHHH
Q 013802 67 VLIGVGASVGAGIFVVTGTVARDAGP---GVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVF 143 (436)
Q Consensus 67 ~~~~i~~~ig~gi~~~~~~~~~~~G~---~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g 143 (436)
....++.++|+| |.+-....+..|+ .+.++.++.+++....+....|+++++.. ...-.+.++..||.++...-
T Consensus 9 ~f~~ig~~vGAG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a--~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 9 AFAFIGTVVGAG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA--TSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHhhccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHhhHHHHHHHH
Confidence 344566789998 6666666666664 38999999999999999999999999975 88889999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhh-hhhHHHH
Q 013802 144 AQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG-VGESSVL 222 (436)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~~~~ 222 (436)
....+..+..+.....+.+..+.+.++ .|.| +-+++++.+...+..++ .+..-++
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e~~~--------lP~w----------------iGali~i~~v~i~lfl~~vegi~tv 141 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEEMFG--------LPYW----------------IGALIIILLVLILLFLGRVEGIITV 141 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHhC--------ccHH----------------HHHHHHHHHHHHHHHHhcccceeee
Confidence 665555444444444444546666543 5554 23356666666666666 7777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccC-CC--CCCCCchHHHHHHHHHHHHH-hhhhHHHhhhhhhhcCCCCChhHHHHH
Q 013802 223 NSCMTVVKVIIVIVVIFAGAFEVDVSN-WS--PFAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLPIGILG 298 (436)
Q Consensus 223 ~~~~~~~~i~~~~~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~-~~G~e~~~~~~~E~k~p~k~~p~ai~~ 298 (436)
+.+...+.++.+......... .+.++ +. .....+|.. .......+. ....-....+.+|+|++ |+..++-..
T Consensus 142 n~iI~P~LIi~l~~v~~~~~f-~~~~~~a~~~~~~~~~W~~--~~~~Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~ 217 (349)
T COG3949 142 NGIITPFLIIILVLVTLSFQF-TNLGNAAQIVLTKQGNWKA--SAVGYGALNILVAVAVLVPLGGRMESR-KVSGIGGLI 217 (349)
T ss_pred heeHHHHHHHHHHHHHHHHHH-hhccchhhhcCCcCCChHH--HHHhhhhHHHHhHhHhhhhhccccccc-chhhhhhhh
Confidence 777766665553332222222 11111 11 111122221 111122221 12334456677999995 667888888
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 299 SLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364 (436)
Q Consensus 299 ~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 364 (436)
+-++.+++..+.+.......+ +-...|-|..++.++.. +....++.+.+......+..+.+++.
T Consensus 218 gglIlgvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~l 281 (349)
T COG3949 218 GGLILGVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYGL 281 (349)
T ss_pred hhHHHHHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777776544 33345678888887776 55556677777777777766665553
No 60
>PRK11375 allantoin permease; Provisional
Probab=99.11 E-value=1.3e-06 Score=87.14 Aligned_cols=333 Identities=11% Similarity=0.011 Sum_probs=169.5
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCC-chhhhhH
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAY 131 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~G-g~y~~~~ 131 (436)
..++.+|+.++++.+.+=++..+..+.+...+... ..|-..+-+++...+..+.....++-.+..-++ .| +.....|
T Consensus 19 pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l-~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~-~Gl~~~v~sR 96 (484)
T PRK11375 19 PKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF-ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSK-YGVPFAMILR 96 (484)
T ss_pred cCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHhcccccc-cCCChhHhHH
Confidence 45556788899998877666665433332233233 234333333333333344444444445555555 55 5666777
Q ss_pred HHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCcccCCCCccccccchhhHHHHHHHHHHHH
Q 013802 132 TAFNELTAFLVFAQLM-LDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (436)
Q Consensus 132 ~~~g~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (436)
..||.+-+.+.+.... +..+...+......++.+..+++ ++|.+....++. ...+-+....+...++.++.+
T Consensus 97 ~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~------~~~g~~~~~~i~~~i~~~l~~ 170 (484)
T PRK11375 97 ASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDF------TLLGLSLPGLITFLIFWLVNV 170 (484)
T ss_pred HHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc------ccCCCcHHHHHHHHHHHHHHH
Confidence 7899877777776653 44455555566666666665443 333221111000 000001111233445556666
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCC-------chHHHHHHHHHHHHHhh-hhHHHhhh
Q 013802 210 IVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPN-------GFKEILTGATVVFFAYV-GFDAVANS 281 (436)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-G~e~~~~~ 281 (436)
.+...|.|...+++.+...+.++..+.+.+..+...+.+......+. ....+..++...+-++. +.-..+.+
T Consensus 171 ~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~ 250 (484)
T PRK11375 171 GIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDF 250 (484)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccch
Confidence 66778999999999999888777666665555544332221111111 12345544433333333 44467788
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH-hcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHH-H
Q 013802 282 AEESKKPQRDLPIGILGSLLICAALYVGVSLVLT-GMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLL-V 359 (436)
Q Consensus 282 ~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~ 359 (436)
++..|++ |+.-++...++.+...+.....+... .....-.....+| .+++...+...+..+..+..++++.++.. .
T Consensus 251 tRy~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~ 328 (484)
T PRK11375 251 TQNAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQRWDSLFASFFAVLVILMTTISTNATG 328 (484)
T ss_pred hcccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 8888886 44556666666665554433222221 1111100112334 33444544455555555556666666533 3
Q ss_pred HHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhh
Q 013802 360 GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (436)
Q Consensus 360 ~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 408 (436)
.+++++--+ .+.+||+. |+| ++.++..+++.++...
T Consensus 329 N~ys~~~~l-----~~l~pk~i---~~~-----~~~~i~~iig~~~~pw 364 (484)
T PRK11375 329 NIIPAGYQI-----AALAPTKL---TYK-----NGVLIASIISLLICPW 364 (484)
T ss_pred hcccHHHHH-----HHhCcCcc---chh-----hHHHHHHHHHHHhccH
Confidence 444444333 45677543 443 4555565566555543
No 61
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.89 E-value=1.9e-10 Score=113.33 Aligned_cols=291 Identities=12% Similarity=0.076 Sum_probs=177.5
Q ss_pred cccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcC--CCCchhhhhHHHhc
Q 013802 59 RRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPA--VVGGAYLYAYTAFN 135 (436)
Q Consensus 59 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~--~~Gg~y~~~~~~~g 135 (436)
||-|+++.....+..++|+|++..|. ....+|.. .....++.++++......+.|.....|+ +.-.+.+-+++.+|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~-af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPY-AFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 56789999999999999999988877 44556664 7888888888888889999999888762 03444455578899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH-Hh
Q 013802 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL-CW 214 (436)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~ 214 (436)
|+.++++..+..+........+....++.+..++. ..... ..+.. ....++..++...+. .+
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~---~~~~~-~~~~~-------------~~~~~i~~~i~~pls~~~ 142 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIP---SFFGD-LFISR-------------YVWIIIFALIVLPLSFLK 142 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeecccc---ccccc-ccccc-------------cccccccccccccccccc
Confidence 99999998888888887777787777777776443 11100 00000 011111111111111 12
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhc--ccccCCC---CCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCC
Q 013802 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFE--VDVSNWS---PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQ 289 (436)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~ 289 (436)
..+...+...+.....+..+.......... .+..+.. .+....+.++..++....++|.++.....+.+|+|+|+
T Consensus 143 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~ 222 (409)
T PF01490_consen 143 NLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPS 222 (409)
T ss_pred hhhHHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCc
Confidence 223333332222222221101111111111 1111111 11233456889999999999999999999999999986
Q ss_pred C--ChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 290 R--DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLK-YVSVLISFGAVAGLTTTLLVGLYVQSR 366 (436)
Q Consensus 290 k--~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~sR 366 (436)
| +..|+...+..+++++|....+......+.+ ..+ .+...+... +...+..+...++.+.+..-......+
T Consensus 223 ~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~~~-----~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~ 296 (409)
T PF01490_consen 223 KFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDS-VQG-----NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARN 296 (409)
T ss_pred cccccceeeeehhhhhhHHhhhhhhcccceeeee-ecc-----hhhhcCCCcccccccccccchhhhhhccccccchhHh
Confidence 5 3559999999999999998888877666543 222 233333322 344455555555555554444555555
Q ss_pred HHHHhhh
Q 013802 367 LYLGLGR 373 (436)
Q Consensus 367 ~l~~~a~ 373 (436)
.+...-+
T Consensus 297 ~l~~~~~ 303 (409)
T PF01490_consen 297 SLENLLF 303 (409)
T ss_pred hhhhhee
Confidence 5555543
No 62
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.75 E-value=0.00012 Score=72.61 Aligned_cols=240 Identities=12% Similarity=0.038 Sum_probs=123.3
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch---HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCC-chhh
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVG-GAYL 128 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~---~~~~~ii~~i~~~~~~~~~~el~~~~p~~~G-g~y~ 128 (436)
..++.+|+.++++.+.+=++..+...-+....... ..|-+ ++++.+++.++.... .+-.+..-|+ .| ....
T Consensus 6 pvp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~-~~GLs~~~ailai~lG~~i~~~~---~~l~~~~G~r-~Gl~~~v 80 (442)
T TIGR00800 6 PVKEEERTWSFLNYFSLWLGAAFNIATWAIGALGL-PLGLSWWQSVIAIILGNLLGGIF---VALNSRAGAK-YGLPFPV 80 (442)
T ss_pred CCCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHH---HHHhhhhHHH-hCCCcch
Confidence 34455677788988877776665433333323222 23322 444444444443333 3334444444 44 4566
Q ss_pred hhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCcccCCCCccccccchhhHHHH-HHHHH
Q 013802 129 YAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILA-PILLA 206 (436)
Q Consensus 129 ~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 206 (436)
..|..||++-+.+.+.+..+..+...+.++...++.+..+++ +++......++ . + ....+. +++..
T Consensus 81 ~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~-~----------t-~~~~~~~~i~~~ 148 (442)
T TIGR00800 81 LSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNG-M----------T-TLELICFIIFWA 148 (442)
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCc-c----------c-HHHHHHHHHHHH
Confidence 777789999899888888888888888888888877777655 22211000000 0 0 001222 22222
Q ss_pred HHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccCC---CC--CCCCchHHHHHHHHHHH-HHhhhhHHH
Q 013802 207 LLTI-VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNW---SP--FAPNGFKEILTGATVVF-FAYVGFDAV 278 (436)
Q Consensus 207 ~~~~-i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~-~~~~G~e~~ 278 (436)
+... ....|.|...+.+.......++.++.++ ....+.+ ..+. .+ ..+.....++.++...+ +..++....
T Consensus 149 l~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~ 227 (442)
T TIGR00800 149 LVLVFLFFFGYKIRHLFEWLAVVPPFAAFGMLI-WALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNA 227 (442)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 2222 3455666555555555554444444333 2222211 1111 11 11222345555554433 334555577
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHH
Q 013802 279 ANSAEESKKPQRDLPIGILGSLLICAALYVGVS 311 (436)
Q Consensus 279 ~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~ 311 (436)
+.++...|+++. -.++...+.....+...+..
T Consensus 228 ~DysRy~~~~~~-~~~~~~~~~~~~~~~~~~~g 259 (442)
T TIGR00800 228 PDFTRFGKSKKT-AIWGQFLALPGGFTLTCFFG 259 (442)
T ss_pred hhhhhhcCCccc-hHHHHHHHHHHHHHHHHHHH
Confidence 888888888644 45556655555554444433
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.75 E-value=7.7e-05 Score=73.37 Aligned_cols=285 Identities=14% Similarity=0.007 Sum_probs=156.1
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhch-
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE- 136 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~- 136 (436)
.|+++++....-.+++.++++.+.......-..|...++..+...+..+..+..+.+.-++.+ .-..++|.++++|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG--AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHhCch
Confidence 478888888877777777766666544333334443333223333334455566666655544 36788999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 013802 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (436)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (436)
....+.+....+......+......+..++...+ .+.| ..+.+...+.+.....-|.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~---------------~~~ii~~~i~~~Yt~~GG~ 136 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLY---------------LSLLLLGAITILYTVFGGL 136 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHH---------------HHHHHHHHHHHHHHHHcch
Confidence 4666677777788888888888888888877543 2222 1222333344455666788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccc-c-------cC----------CCCCCCCc---hHHHHH---HHHHHHHHh
Q 013802 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVD-V-------SN----------WSPFAPNG---FKEILT---GATVVFFAY 272 (436)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~-------~~----------~~~~~~~~---~~~~~~---~~~~~~~~~ 272 (436)
|...+...+=.++.++..+.+.+..+.+.+ . .+ ..+...+. ...+.. +.+.....+
T Consensus 137 ~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (407)
T TIGR00813 137 KAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWY 216 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHH
Confidence 888887777766665554444433322211 0 00 00000000 001101 111110011
Q ss_pred hhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHh---ccc---cc-c----cCCCChHHHHHHHcChhHH
Q 013802 273 VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG---MVP---YK-F----LDEDAPLSDAFASRGLKYV 341 (436)
Q Consensus 273 ~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~---~~~---~~-~----~~~~~~~~~~~~~~~~~~~ 341 (436)
..-....+-.=-.|| +|+.+|+..++.....++++...+.-.. ..+ ++ + .+.+..+....++...+++
T Consensus 217 ~~~~~~~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l 295 (407)
T TIGR00813 217 WTNQVIVQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGL 295 (407)
T ss_pred hcCHHHhhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcch
Confidence 000001111112355 4778899988877766666544333221 122 11 1 1234455666677777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 342 SVLISFGAVAGLTTTLLVGLYVQSRLY 368 (436)
Q Consensus 342 ~~i~~~~~~~~~~~~~~~~~~~~sR~l 368 (436)
.-++.+.++.+.+++..+.+.+.+-.+
T Consensus 296 ~gl~~agilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 296 AGLFLAAILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 878888888888888877777766554
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.73 E-value=0.0003 Score=70.77 Aligned_cols=282 Identities=14% Similarity=0.125 Sum_probs=150.1
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHH---HHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHH
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISF---LLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~---ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (436)
.|++++|-...-..++.++++-+..........|.. .++.. ....+.....+.-+.++.++.. .=...+|.+++
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN--AVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence 688888777766667777665555544333333433 22211 1111122233344555666653 36788999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 134 FNEL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 134 ~g~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
+|+. .....+....+.............+..++...+ .|.+ .-+.+...+.+....
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------i~~~---------------~~iii~~~iv~iYt~ 174 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------ISYE---------------TGLLIFGITVALYTA 174 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHH
Confidence 9864 566666666666666777777777777777543 2222 111222233345555
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-------------cccCCCCCCCCchH--HHHHHH-HHHHHHhhhhH
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNGFK--EILTGA-TVVFFAYVGFD 276 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~G~e 276 (436)
..|.|...+...+-..+.++..+++.+..+... +++.+.+..+.++. .....+ ........+..
T Consensus 175 ~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p 254 (483)
T PRK09442 175 FGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLP 254 (483)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCC
Confidence 678888887777776666655544433322211 11111122112211 111111 11112222222
Q ss_pred HHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHh---cccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHH
Q 013802 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG---MVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGL 353 (436)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 353 (436)
....-.=..||+ |+..|+..++......+++...+.-.. ..|. ....+..+....++...+++.-++.+..+.+.
T Consensus 255 ~~~qR~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~ 332 (483)
T PRK09442 255 HTAVRCMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAI 332 (483)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 222222225675 678898888877766666544433211 1232 22344556666677777888878888888888
Q ss_pred HHHHHHHHHHHHH
Q 013802 354 TTTLLVGLYVQSR 366 (436)
Q Consensus 354 ~~~~~~~~~~~sR 366 (436)
.++..+.+.+.+-
T Consensus 333 mST~~s~l~~~ss 345 (483)
T PRK09442 333 MSTVDSQLLQSSS 345 (483)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777766554
No 65
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.72 E-value=0.00012 Score=70.12 Aligned_cols=302 Identities=13% Similarity=0.083 Sum_probs=158.7
Q ss_pred hHHHHHHhhhhhcchhhhchHHhh-hhcCchHHHHHHHHH-HHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHH
Q 013802 64 FELVLIGVGASVGAGIFVVTGTVA-RDAGPGVTISFLLAG-AASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (436)
Q Consensus 64 ~~~~~~~i~~~ig~gi~~~~~~~~-~~~G~~~~~~~ii~~-i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~ 141 (436)
...+.-+.|+.+|-|-....++.. +++|.+.++.+++.. ++.++..+.=--++++... +..-.|-+. .+++....
T Consensus 12 lGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~--~~~~a~~~l-~~~~~~~~ 88 (439)
T COG0733 12 LGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRK--NAVGAFRKL-APKKKWEW 88 (439)
T ss_pred HHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCC--ChhHHHHHh-ccCccchh
Confidence 444555777779988888777554 555555444444433 3455554433334455443 222222222 11233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhh-H
Q 013802 142 VFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE-S 219 (436)
Q Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~ 219 (436)
.||.-..+..+...-|....+-.+.+.+. ....+. .+.+...+...+...++......-.++.++..++..+|++. .
T Consensus 89 ~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GI 167 (439)
T COG0733 89 IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-DTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGI 167 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 45544444444444444433333333222 111111 11111011111112223333444467777778888889866 7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccc---------ccCCCCCCCCchHHHHHHHHHHHHHh-hhhHHHhhhhhhhcCCC
Q 013802 220 SVLNSCMTVVKVIIVIVVIFAGAFEVD---------VSNWSPFAPNGFKEILTGATVVFFAY-VGFDAVANSAEESKKPQ 289 (436)
Q Consensus 220 ~~~~~~~~~~~i~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~p~ 289 (436)
.|.++++.....+.++++.+-.+...+ ..++.... +...++.++..++|+. .|+.....++...++ |
T Consensus 168 Ek~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~--~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~ 244 (439)
T COG0733 168 EKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT--DPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-K 244 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC--chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c
Confidence 899999988877777777665544211 11222222 1446778888888877 588888888888877 6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHh---cccccccCCC----ChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 290 RDLPIGILGSLLICAALYVGVSLVLTG---MVPYKFLDED----APLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLY 362 (436)
Q Consensus 290 k~~p~ai~~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 362 (436)
.|+++.-.........+-++.-+.+.- ..+.+.-..+ ..++.++++.. +..++.+..+++...+++++..
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp---~G~~~~~lFFl~l~fAalTS~i 321 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMP---LGTLFGILFFLLLLFAALTSAI 321 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCc---hhHHHHHHHHHHHHHHHHHHHH
Confidence 789998888877777776665544432 2222211111 14555666654 3344445445555555555555
Q ss_pred HHHHHHHHhhhcC
Q 013802 363 VQSRLYLGLGRDG 375 (436)
Q Consensus 363 ~~sR~l~~~a~d~ 375 (436)
+.-...-+.-.|+
T Consensus 322 SmlE~~va~l~~~ 334 (439)
T COG0733 322 SMLEVLVAALIDK 334 (439)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444443
No 66
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.71 E-value=0.00031 Score=70.46 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=152.2
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHH---HHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHH
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISF---LLAGAASVLNALCYAELASRFPAVVGGAYLYAYTA 133 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~---ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~ 133 (436)
.|+++++....-.+++.++++-+..........|.. ..+.+ ..+.++....+.-+.++.++.. .-..++|.+++
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN--AITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence 688999888888887778766666544333333432 11111 1111111122333444455543 36788999999
Q ss_pred hch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 134 FNE-LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 134 ~g~-~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
+|+ ......+....+.............+..++...+ .|.|. -+.+...+.+....
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------i~~~~---------------~iii~~~iv~iYt~ 173 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------LSYLT---------------ALFIFSSSVLIYTT 173 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHH---------------HHHHHHHHHHHHHH
Confidence 995 4566666666666666666666677777766543 23221 12223333455566
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-c------------cCCCCCCCCchH--HHHHHH-HHHHHHhhhhH
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-V------------SNWSPFAPNGFK--EILTGA-TVVFFAYVGFD 276 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~------------~~~~~~~~~~~~--~~~~~~-~~~~~~~~G~e 276 (436)
.-|.|...+.+.+-.++.++..+++.+..+...+ . +.+.+..++++. .+...+ ....+...+..
T Consensus 174 ~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p 253 (471)
T TIGR02119 174 FGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLP 253 (471)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCch
Confidence 6788888888777776666655554443333211 0 111111112211 111111 11111222222
Q ss_pred HHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhc--ccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHH
Q 013802 277 AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGM--VPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLT 354 (436)
Q Consensus 277 ~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 354 (436)
....-.-..||+ |+..|+..++..+...+++...+.-... ..++..+.+..+.....+...+++.-++.+.++.+.+
T Consensus 254 ~~~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~m 332 (471)
T TIGR02119 254 QTAVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIM 332 (471)
T ss_pred HHHHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHH
Confidence 222233445664 7788999888776666655443332211 1222222355566666666677887777788888888
Q ss_pred HHHHHHHHHHHHH
Q 013802 355 TTLLVGLYVQSRL 367 (436)
Q Consensus 355 ~~~~~~~~~~sR~ 367 (436)
++..+.+.+.+-.
T Consensus 333 ST~~s~l~~~ss~ 345 (471)
T TIGR02119 333 STVNSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777666644
No 67
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.62 E-value=0.00046 Score=69.45 Aligned_cols=282 Identities=13% Similarity=0.057 Sum_probs=138.4
Q ss_pred ccccchhHHHHHHhhhhhcchhhhc-hHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCc--C-CCCchhhhhHHH
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFP--A-VVGGAYLYAYTA 133 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p--~-~~Gg~y~~~~~~ 133 (436)
.|+++++-...-..++.+++..+.. ++.... .|....+..+-..+..+...+.+++--+++. + ..=..++|.+++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 6788887766555555555444443 444443 3543222222111222333344444333332 2 023478999999
Q ss_pred hch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHH
Q 013802 134 FNE---LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (436)
Q Consensus 134 ~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (436)
+|+ ....+.+....+......+......+..++...+ .+.| .-+.+...+.+..
T Consensus 114 yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------i~~~---------------~~iii~~~i~~~Y 170 (487)
T TIGR02121 114 FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------LDYK---------------TGLLIGALIIVIY 170 (487)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccHH---------------HHHHHHHHHHHHH
Confidence 984 4555555555555556666666677777766443 2222 1122333445556
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-------------ccCCCCCCCCchHHHHHHHHHHHHHhhhhHH
Q 013802 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-------------VSNWSPFAPNGFKEILTGATVVFFAYVGFDA 277 (436)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~ 277 (436)
...-|.|...+...+=.++.++..+.+.+..+.+.+ ++..+.+.+..+..+... ..|.+ |.-.
T Consensus 171 t~~GGl~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~-g~~~ 246 (487)
T TIGR02121 171 TFFGGFLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISL---LAWGL-GYFG 246 (487)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHH---HHHHH-Hhcc
Confidence 666788888887777666665554443333322211 111111111222222221 22221 1111
Q ss_pred Hhhhhhh---hcCCCCChhHHHHHHHHHHHHHHHHHHHHH-H--hccccc-cc---CCCChHHHHHHHcChhHHHHHHHH
Q 013802 278 VANSAEE---SKKPQRDLPIGILGSLLICAALYVGVSLVL-T--GMVPYK-FL---DEDAPLSDAFASRGLKYVSVLISF 347 (436)
Q Consensus 278 ~~~~~~E---~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~-~--~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~i~~~ 347 (436)
..++... .||+ |+..|+..++.......++...+.. . ...+.. +. +.+..+....+....+++.-++.+
T Consensus 247 ~p~~~qR~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a 325 (487)
T TIGR02121 247 QPHIIVRFMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLA 325 (487)
T ss_pred chHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHH
Confidence 1222221 3554 6788888777544333222111111 1 111111 11 234445555566667787777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013802 348 GAVAGLTTTLLVGLYVQSRLY 368 (436)
Q Consensus 348 ~~~~~~~~~~~~~~~~~sR~l 368 (436)
.++.+..++..+.+.+.+-.+
T Consensus 326 ~ilaA~mST~~s~l~s~ss~~ 346 (487)
T TIGR02121 326 AILAAIMSTISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777776443
No 68
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.59 E-value=0.00043 Score=67.10 Aligned_cols=315 Identities=18% Similarity=0.152 Sum_probs=172.9
Q ss_pred HhhhhhcchhhhchHHhhhhcCch---HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHHHHHHH
Q 013802 70 GVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQL 146 (436)
Q Consensus 70 ~i~~~ig~gi~~~~~~~~~~~G~~---~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~ 146 (436)
.++.-.|+|=+..|...-..+|.. +.++++++++..=..+.. +.. + .||.+.=..+..||.++.+.....
T Consensus 12 LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvi----a~~--~-~~~~~~~l~~~v~~~f~~if~~~i 84 (427)
T PF05525_consen 12 LFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVI----AVA--K-SGGGIEDLASRVGPKFALIFTILI 84 (427)
T ss_pred HHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HHh--h-cCCCHHHHhcccCcHHHHHHHHHH
Confidence 444457888888888877778853 666666666643222211 111 2 454555556667888887766443
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 013802 147 ML--DYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNS 224 (436)
Q Consensus 147 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 224 (436)
.+ +=.... ....+...... ..|.... +..+ ...+..+++..+..++.....|...++-+
T Consensus 85 ~l~IGP~~ai---PRtaa~sfe~~--i~p~~~~-~~~~-------------~~~ifs~iFF~i~~~l~~~p~kivd~iGk 145 (427)
T PF05525_consen 85 YLSIGPLFAI---PRTAAVSFEMG--IAPFFPE-NSNI-------------SLLIFSIIFFAITYLLSLNPSKIVDRIGK 145 (427)
T ss_pred HHHHHhcccC---cchhhhhHHHh--hhccCCc-cccc-------------chhhhhHHHHHHHHHHHhchhhHHHHHHH
Confidence 32 211111 11111111111 1232221 1121 12567778888888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCCC---CCCch-HHHHHHHH----HHHHHhhhhHHHhhhhhhhcCCCCChhHHH
Q 013802 225 CMTVVKVIIVIVVIFAGAFEVDVSNWSPF---APNGF-KEILTGAT----VVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (436)
Q Consensus 225 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~---~~~~~-~~~~~~~~----~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (436)
++....++.++++++.++.+...+...+. .++.+ .++..+.. .+...|...-..+--....+|+ |+..|.+
T Consensus 146 ~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~ 224 (427)
T PF05525_consen 146 FLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYT 224 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHH
Confidence 99999999999999988886433322211 11111 12222221 1334444444444444444554 4445555
Q ss_pred HHHHHHH----HHHHHHHHHHHHhcccc--cccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 297 LGSLLIC----AALYVGVSLVLTGMVPY--KFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (436)
Q Consensus 297 ~~~~~~~----~v~y~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (436)
..+-.+. .++|......-....+. ++.+..+.+..+.++..++.+..++.+...++++.+..+-..+++....+
T Consensus 225 ~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~ 304 (427)
T PF05525_consen 225 IKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSE 304 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 34444333332222211 12223345666667778888899999999999999999998888877766
Q ss_pred hhhcCCCchhhhhhcCCCCCchh-HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH
Q 013802 371 LGRDGLLPSIFAKVHPKRHTPVH-SQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHS 427 (436)
Q Consensus 371 ~a~d~~lP~~~~~~~~~~~~P~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 427 (436)
+. + +.+++ .+++..+++.++.-+ .++.+.++..---.+.|=
T Consensus 305 ~~-------------~--kisY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~PiL~~iYP 346 (427)
T PF05525_consen 305 LF-------------P--KISYKVWVIIFTIFSFIIANL-GLDQIIKISVPILMFIYP 346 (427)
T ss_pred Hh-------------c--ccChHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHhH
Confidence 42 2 22333 333344444444433 555555555444444443
No 69
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.58 E-value=0.00053 Score=66.50 Aligned_cols=242 Identities=12% Similarity=0.043 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013802 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAY-TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 172 (436)
Q Consensus 94 ~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~-~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (436)
++++.+++.++.......+ +..-|+ .|=.....+ ..+|.+-+.+.....++.+.-..+.+....++.....
T Consensus 54 si~aillG~llG~i~~A~~---s~~Ga~-~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~---- 125 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYF---SYQGAR-TGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG---- 125 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHhccc-cCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC----
Confidence 4555555554444444444 444455 453444444 4689988888888888888777777776666642221
Q ss_pred cccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCC-C
Q 013802 173 PFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW-S 251 (436)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~-~ 251 (436)
+..|.| +..++..+++++...+|.|...+++++......+..+......+-..+..+- .
T Consensus 126 ----~~~~~~----------------~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~ 185 (442)
T COG1457 126 ----TGLPVW----------------AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALW 185 (442)
T ss_pred ----CCCcHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceee
Confidence 133332 3445556677788889999999999999998887777666555442221111 1
Q ss_pred CCCCCchHHHHHHHHHHHHHhhh-hHHHhhhhhhhcCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChH
Q 013802 252 PFAPNGFKEILTGATVVFFAYVG-FDAVANSAEESKKPQR-DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPL 329 (436)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~G-~e~~~~~~~E~k~p~k-~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~ 329 (436)
.-.+.++.+++.++..++-.+.. --.++.++.-.|+|+. +.-.+...+..+...+..+.-.+.....+.++ +.
T Consensus 186 ~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~-----~~ 260 (442)
T COG1457 186 VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD-----SI 260 (442)
T ss_pred ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----hH
Confidence 11134445666666555443433 3356666776776541 12233333333333333322222222223222 34
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (436)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (436)
.+.....|+ +.....+...++..++....+++.+=-...
T Consensus 261 ~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~ 299 (442)
T COG1457 261 ADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFAN 299 (442)
T ss_pred HHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444445553 344455555666666555555555544433
No 70
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.57 E-value=6.8e-06 Score=80.83 Aligned_cols=285 Identities=17% Similarity=0.099 Sum_probs=136.7
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchh
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNEL 137 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~ 137 (436)
.|+++++-...-.+++.++++-+..........|....+..+...+......+.++.--++.. .-...+|.++++|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSG--AVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT----SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccc--hhhhhhhhhhhcCCc
Confidence 578888877777777777766665544333344544333333333333344444444444332 357889999999988
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 013802 138 T--AFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (436)
Q Consensus 138 ~--g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (436)
. ..+.+....+......+......+..++...+ .+.+ ..+.+...+.+.....-|
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------i~~~---------------~~~~i~~~i~~iYt~~GG 139 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------IPYN---------------TAILIVGVIVIIYTFFGG 139 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------HH---------------HHHHHHHHHHHHTTCTT-
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccc--------hhhh---------------HHHHHHHHHHHHhhhhhh
Confidence 7 56666556667777778888888888777543 1111 112222333333444567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-------------cccCCCCCCCCch---HHHHHHHHHHHHHhhhhHHHh
Q 013802 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNGF---KEILTGATVVFFAYVGFDAVA 279 (436)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~G~e~~~ 279 (436)
.|...+...+-.++.++..+++.+..+... +++..+.+.+.+. .+.............|.....
T Consensus 140 l~av~~td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p 219 (406)
T PF00474_consen 140 LRAVAWTDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAP 219 (406)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccch
Confidence 888887666666655555444444333211 1100111112221 011111111011112333334
Q ss_pred hhhhhh---cCCCCChhHHHHHHHHHHHHHHHHHHH------HHHhcccc----cccCCCChHHHHHHHcChhHHHHHHH
Q 013802 280 NSAEES---KKPQRDLPIGILGSLLICAALYVGVSL------VLTGMVPY----KFLDEDAPLSDAFASRGLKYVSVLIS 346 (436)
Q Consensus 280 ~~~~E~---k~p~k~~p~ai~~~~~~~~v~y~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (436)
++..+. ||+ |+..|+...+.....+++..... ......|+ ++.+.+..+....++...+++.-++.
T Consensus 220 ~~~qR~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~ 298 (406)
T PF00474_consen 220 HFWQRFLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFL 298 (406)
T ss_dssp HHHHHHHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHH
T ss_pred HHHHHHHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHH
Confidence 443333 443 66788887776554444443211 11111121 11223445666667777788887888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013802 347 FGAVAGLTTTLLVGLYVQSRLY 368 (436)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l 368 (436)
+.++.+..++..+.+.+.+-.+
T Consensus 299 ~~~~aA~~ST~~s~l~a~ss~~ 320 (406)
T PF00474_consen 299 AGILAAIMSTADSLLLAISSIF 320 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhhhhh
Confidence 8888888888888877777544
No 71
>PRK11017 codB cytosine permease; Provisional
Probab=98.55 E-value=0.0011 Score=64.85 Aligned_cols=219 Identities=13% Similarity=0.101 Sum_probs=112.9
Q ss_pred cccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCC-chhhhhHHHh
Q 013802 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAF 134 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~G-g~y~~~~~~~ 134 (436)
.+|+ ++++.+..-++..+....+...+.....-+.. ++++.+++.++........ +..-|+ .| ......|..|
T Consensus 7 ~~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~---~~~G~k-~G~~~~v~sR~~F 81 (404)
T PRK11017 7 SARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAAL---GYIGAK-TGLSTHLLARFSF 81 (404)
T ss_pred HHhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHhc-cCcCHHHHHHHHh
Confidence 3455 77886555444333222222222211111222 5555555554443333333 344455 45 4556666789
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 013802 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (436)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (436)
|.+-+.+.+....+..+...+.+....+..+....+ .+. ....+++.++.......
T Consensus 82 G~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------~~~----------------~~~~~i~~~l~~~~~~~ 137 (404)
T PRK11017 82 GEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------LDI----------------NLLIVLSGLLMTVTAYF 137 (404)
T ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------CCH----------------HHHHHHHHHHHHHHHHH
Confidence 988888877776666655555555555554444322 111 11233445555667788
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccCCCCCCCCchHHHHHHHHHH-HHHhhhhHHHhhhhhhhcCCCCCh
Q 013802 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD-VSNWSPFAPNGFKEILTGATVV-FFAYVGFDAVANSAEESKKPQRDL 292 (436)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~e~~~~~~~E~k~p~k~~ 292 (436)
|.|...+++++.....++..+...+..+...+ .+......+.+...++.++... .+..++.-..+.++++.|++++ .
T Consensus 138 G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-~ 216 (404)
T PRK11017 138 GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI-A 216 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccc-e
Confidence 89999999999888777666554443333222 1111111122223444444332 2234555677788888887654 3
Q ss_pred hHHHHHHHHHHHH
Q 013802 293 PIGILGSLLICAA 305 (436)
Q Consensus 293 p~ai~~~~~~~~v 305 (436)
-.+...+..+...
T Consensus 217 ~~~~~lg~~i~~~ 229 (404)
T PRK11017 217 VLATMVAFFLGNS 229 (404)
T ss_pred eehhHHHHHHHHH
Confidence 3555555444333
No 72
>PRK12488 acetate permease; Provisional
Probab=98.55 E-value=0.00089 Score=68.32 Aligned_cols=156 Identities=10% Similarity=-0.064 Sum_probs=93.2
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHH-HHHHHHHhhhhCcCCCCchhhhhHHHhc-
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVL-NALCYAELASRFPAVVGGAYLYAYTAFN- 135 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~-~~~~~~el~~~~p~~~Gg~y~~~~~~~g- 135 (436)
.|++++|.......+..+++.-|..........|...++ +.++..+.++ ..+.+++--++... =-.++|.++++|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~--~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLL-YALGVLAGWPIILFLIAERLRNLGK--YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC--cchHHHHHHHcCC
Confidence 689999998877777777766555443333334544322 2223333332 23344444444333 356778888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 013802 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (436)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (436)
|....+.+....+....+........+..++.+.+ .+.|. -+.+...+.+.....-|
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------i~~~~---------------~iii~~~i~~~Yt~~GG 199 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------ISYLY---------------AVVIVGALMVLYVTFGG 199 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHH---------------HHHHHHHHHHHHHhccc
Confidence 56888888887777777777788788877777543 22221 12222333444555678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 013802 216 VGESSVLNSCMTVVKVIIVIVVIF 239 (436)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i 239 (436)
.|...+.+.+=.++.++..++..+
T Consensus 200 m~av~~td~iQ~~im~~~~i~~~~ 223 (549)
T PRK12488 200 MLATTWVQIIKAVLLLSGTSFMAF 223 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 898888877777666665544433
No 73
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.51 E-value=0.0012 Score=67.41 Aligned_cols=155 Identities=10% Similarity=-0.023 Sum_probs=85.7
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHH-HHHHHHHHhhhhCcCCCCchhhhhHHHhc-
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASV-LNALCYAELASRFPAVVGGAYLYAYTAFN- 135 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~-~~~~~~~el~~~~p~~~Gg~y~~~~~~~g- 135 (436)
.|++++|....-..+..+++.-|..........|...++.. ++..+.. ...+.+++--++.-. =-..+|.+++++
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~--~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR--YTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC--ccHHHHHHHHcCC
Confidence 68888886655555555554444443323333454432222 2333333 333445554444322 345667778886
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 013802 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (436)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (436)
|....+.+....+....+........+..++.+.+ .+.| .-+.+...+.+.....-|
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------i~~~---------------~~iii~~~i~~~Yt~~GG 199 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------LNYH---------------VAVVLVGILMVMYVLFGG 199 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHH---------------HHHHHHHHHHHHHHHhhh
Confidence 55677777766666666667777777777776543 2222 112223334444555678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 013802 216 VGESSVLNSCMTVVKVIIVIVVI 238 (436)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~ 238 (436)
.|...+.+.+=.++.++..+++.
T Consensus 200 m~av~~td~iQ~~im~~g~i~~~ 222 (549)
T TIGR02711 200 MLATTWVQIIKAVLLLFGATFMA 222 (549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777766655544443
No 74
>PRK09395 actP acetate permease; Provisional
Probab=98.46 E-value=0.002 Score=65.80 Aligned_cols=154 Identities=10% Similarity=-0.018 Sum_probs=87.8
Q ss_pred cccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHH-HHHHHHhhhhCcCCCC--chhhhhHHH
Q 013802 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLN-ALCYAELASRFPAVVG--GAYLYAYTA 133 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~-~~~~~el~~~~p~~~G--g~y~~~~~~ 133 (436)
-.|++++|....-..++.+++.-|..........|...++. .++..++.+. .+.+ +.++.+ .| ..++|.+++
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~-~~~~~~g~~~~~~~~---~~~~r~-~g~~T~~d~l~~R 141 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY-SIGFLVGWPIILFLI---AERLRN-LGKYTFADVASYR 141 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH-HHHHHHHHHHHHHHH---HHHHhh-CCCccHHHHHHHH
Confidence 36789988776666666676555554433333345443222 2222222222 2323 344444 33 456677789
Q ss_pred hc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 134 FN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 134 ~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
+| |....+.+....+....+........+..++.+.+ .+.| ..+.+...+.+....
T Consensus 142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------i~~~---------------~~ili~~~i~~iYt~ 198 (551)
T PRK09395 142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------LNYH---------------VAVVLVGVLMMVYVL 198 (551)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHh
Confidence 98 55788888877777777777777777777766443 2222 122233334445555
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVI 238 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~ 238 (436)
.-|.|...+.+.+=.++.++..+++.
T Consensus 199 ~GGm~av~~TD~iQ~iim~~g~ii~~ 224 (551)
T PRK09395 199 FGGMLATTWVQIIKAVLLLSGATFMA 224 (551)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888877776666555544443
No 75
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.41 E-value=0.0011 Score=64.49 Aligned_cols=329 Identities=14% Similarity=0.077 Sum_probs=168.4
Q ss_pred CCCCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcC-ch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhh
Q 013802 51 TNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAG-PG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128 (436)
Q Consensus 51 ~~~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G-~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~ 128 (436)
....++.+|+.++++-+.+=.+...-.+-+...+...+.+. +. ++++.+++-++.......-+..++++-. .+-.
T Consensus 31 L~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI---pFpv 107 (497)
T COG1953 31 LAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI---PFPV 107 (497)
T ss_pred CCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC---CchH
Confidence 34556778999999998776665544443444444444443 33 6666666665554444333333333211 2334
Q ss_pred hhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCcccCCCCccccccchhhHHHHHHHHHH
Q 013802 129 YAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (436)
Q Consensus 129 ~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (436)
..+..||-+.+..-...=.+.-+......+...+..++.++. ++|.....++.. +...-+....+..+++.++
T Consensus 108 ~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~------~~lg~tt~~~i~F~ifW~l 181 (497)
T COG1953 108 LSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLS------PLLGLTTLELICFFIFWVL 181 (497)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccc------cccCCcHHHHHHHHHHHHH
Confidence 555677766555544444333344444555555555555544 333321111111 0111222334444556666
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCC----Cc---hHHHHHHHHH-HHHHhhhhHHHh
Q 013802 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAP----NG---FKEILTGATV-VFFAYVGFDAVA 279 (436)
Q Consensus 208 ~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~-~~~~~~G~e~~~ 279 (436)
-..+...|.+..+|++.....+..+..+.+.+....+.+........+ .+ +..++.+... .-+-=+..-..+
T Consensus 182 ~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~ 261 (497)
T COG1953 182 QLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIP 261 (497)
T ss_pred HHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 667778899999999999999999999999998888765532211111 11 2223332211 112223444567
Q ss_pred hhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHh----cccccccCCCChHHHHHHHcChhHHHH-HHHHHHHHHHH
Q 013802 280 NSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG----MVPYKFLDEDAPLSDAFASRGLKYVSV-LISFGAVAGLT 354 (436)
Q Consensus 280 ~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~ 354 (436)
..+++.|+| |+.-++-.+++.+...+.-+..+.... ..++. . -+| .++..+........ +..+...++++
T Consensus 262 DFsRfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~-~--w~P-~di~~~~~~~~~~~fl~~l~~~iati 336 (497)
T COG1953 262 DFTRFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGET-I--WDP-LDIVARFLSGFYAAFLAGLTFAVATI 336 (497)
T ss_pred hhhcccCCh-hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcc-c--CCH-HHHHHHhccchHHHHHHHHHHHHHHH
Confidence 777777776 344455556666655555444433332 11211 1 123 33555555443333 44555555555
Q ss_pred HHHHH-HHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHH
Q 013802 355 TTLLV-GLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILA 406 (436)
Q Consensus 355 ~~~~~-~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~ 406 (436)
++..+ ...++.--+ .+.+||+.. .| ++-++.+++++++.
T Consensus 337 ~~Ni~aN~vsp~~D~-----s~l~Pk~in---~k-----rg~liaA~ial~~~ 376 (497)
T COG1953 337 STNIAANIVSPGYDL-----SALFPKYIN---IK-----RGGLIAAIIALLIC 376 (497)
T ss_pred hhhHHhccCChHHHH-----HHhcccccc---hh-----hhHHHHHHHHHHHc
Confidence 54322 222222222 245665543 23 45566666665443
No 76
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.41 E-value=0.0031 Score=63.40 Aligned_cols=286 Identities=13% Similarity=0.028 Sum_probs=151.4
Q ss_pred cccccchhHHHHHHhhhh-hc-chhhhchHHhhhhcCchHHHHHH---HHHHHHHHHHHHHHHhhhhCcCCCCchhhhhH
Q 013802 57 LLRRLGLFELVLIGVGAS-VG-AGIFVVTGTVARDAGPGVTISFL---LAGAASVLNALCYAELASRFPAVVGGAYLYAY 131 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~-ig-~gi~~~~~~~~~~~G~~~~~~~i---i~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~ 131 (436)
-.|+++.+ ..+++.+.. .+ ...+..++.....+-...++... ...+.....+--..+++ +-++ .=..++|.+
T Consensus 36 ~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~-~~T~~d~l~ 112 (493)
T COG0591 36 GGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARG-ATTIPDFLE 112 (493)
T ss_pred cCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccC-CccHHHHHH
Confidence 36888888 666655544 44 33333455554433333333332 23333445555556666 4444 567899999
Q ss_pred HHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHH
Q 013802 132 TAFN-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (436)
Q Consensus 132 ~~~g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (436)
+++| |....+.+....+......+......+..++...+ .+.+ ....+...+....
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~---------------~~~~~~~~~v~~Y 169 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYV---------------TGILIGALIVALY 169 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHH---------------HHHHHHHHHHHHH
Confidence 9999 88999999999999999999999999988865432 1111 1222233444455
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc----------c-ccC---CCCCC-CCchHHHHH---HHHHHHHHh
Q 013802 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------D-VSN---WSPFA-PNGFKEILT---GATVVFFAY 272 (436)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~----------~-~~~---~~~~~-~~~~~~~~~---~~~~~~~~~ 272 (436)
....|.|...+...+=+.+.++.+..+.+...... + .++ ..++. +..+..... ........+
T Consensus 170 t~~gG~~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (493)
T COG0591 170 TFLGGLRAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYF 249 (493)
T ss_pred HHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhh
Confidence 55567777666665555555544444444333210 0 111 11111 111111111 111112333
Q ss_pred hhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH----hcc--ccc----ccCCCChHHHHHHHcChhHHH
Q 013802 273 VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLT----GMV--PYK----FLDEDAPLSDAFASRGLKYVS 342 (436)
Q Consensus 273 ~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~----~~~--~~~----~~~~~~~~~~~~~~~~~~~~~ 342 (436)
..-+...+.-. .|++ |+.||........-.+.+++..++.. ... +++ +.+.+..+.........+|+.
T Consensus 250 ~~~~i~~r~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 327 (493)
T COG0591 250 GQPHILPRFMA-AKSI-KSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIA 327 (493)
T ss_pred cCchhhhhhhh-hccH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHH
Confidence 33344444333 4554 33554444444444444443322221 111 111 123344566666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 343 VLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (436)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (436)
-+....++.+..++..+.+...+-.+-.
T Consensus 328 g~~~~ailaAvmSt~ss~ll~~ss~~t~ 355 (493)
T COG0591 328 GLLLAAILAAVMSTASSQLLVASSAITR 355 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 7777777777777777776666655443
No 77
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.35 E-value=0.0031 Score=64.56 Aligned_cols=149 Identities=11% Similarity=0.013 Sum_probs=90.7
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchH-H--HHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHh
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGV-T--ISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~-~--~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (436)
.|++++|-...-..++.+++.-+..........|... + ++|.++ ....++.+++.-++... -..++|.++++
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~--~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK--YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC--ccHHHHHHHHh
Confidence 6889998877777777776655554332333345432 2 222222 22344666666666654 57899999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHH
Q 013802 135 N-ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLC 213 (436)
Q Consensus 135 g-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (436)
| |....+.+....+......+......+..++.+.+ .+.|. . +.+...+.+.....
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------i~~~~--------------~-iii~~~i~~iYt~~ 162 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------VDFET--------------G-VFIGMAIVFFYAVL 162 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHH--------------H-HHHHHHHHHHHHHh
Confidence 8 44677777777777777777777777777777543 22221 1 22222334445555
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 013802 214 WGVGESSVLNSCMTVVKVIIV 234 (436)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~ 234 (436)
-|.|...+...+=.++.++..
T Consensus 163 GG~~aV~~TD~iQ~iim~ig~ 183 (552)
T TIGR03648 163 GGMKGVTWTQVAQYIVLIVAY 183 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 688888877766665555443
No 78
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.34 E-value=0.0049 Score=62.33 Aligned_cols=158 Identities=14% Similarity=0.001 Sum_probs=85.1
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHH-h--h-hhCcCCCCchhhhhHHH
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAE-L--A-SRFPAVVGGAYLYAYTA 133 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~e-l--~-~~~p~~~Gg~y~~~~~~ 133 (436)
.|++++|-...-..++.+++..+.......-..|....+..+...+..+.....+.. + . .+-+. .--.++|.+++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~T~~e~l~~R 117 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNN-ALTLPDYFTGR 117 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ceeHHHHHHHH
Confidence 688998888776676777666555433333334544322222111111111111111 1 1 11122 34678999999
Q ss_pred hch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHH
Q 013802 134 FNE---LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (436)
Q Consensus 134 ~g~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (436)
+|+ ....+.+....+......+......+..+....+ .+.+ ..+.+...+.+..
T Consensus 118 y~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------i~~~---------------~~iii~~~iv~iY 174 (502)
T PRK15419 118 FEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------MSYE---------------TALWAGAAATILY 174 (502)
T ss_pred hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHH
Confidence 984 4555566666666666666666677777766433 2221 1222333445555
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 013802 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIF 239 (436)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~i~~~~~~~i 239 (436)
...-|.|...+...+=.++.++..+++.+
T Consensus 175 t~~GGl~aV~~TD~iQ~~imi~g~i~~~~ 203 (502)
T PRK15419 175 TFIGGFLAVSWTDTVQASLMIFALILTPV 203 (502)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678888888777777666655544433
No 79
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.32 E-value=6e-05 Score=73.12 Aligned_cols=250 Identities=14% Similarity=0.117 Sum_probs=135.0
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhch
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (436)
+++-+.+..+.-...+++|+|++..|. +....|.. .++...+.+.+.........+-+.+.++ . .+-.-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~-afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPY-AFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-R-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHH-HHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C-CHHHHHHHHcCC
Confidence 455677888888888899999988877 55566664 7777777788888888888899988888 3 444455556665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 013802 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (436)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (436)
.-............ .+...+....++.+...... . ...+|.... +......+.+....++.-+++.. ..
T Consensus 80 ~g~~~~~v~~~~~~-~g~i~yliiigd~~p~~~~~-~----~~~~~~~~~---~~~~~~~ill~~~~~i~pLsl~k--~l 148 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFG-VGMVSYLIIIGDLLPGFIRS-L----FLDEEGGSH---YLDRNFLILLVLLFIILPLSLLK--NL 148 (411)
T ss_pred CceeeehhhHHhhh-ccceEEEEEEccccchhhhh-c----ccccccccc---cccceeEeehHHHHHHHHHHHHH--hh
Confidence 33111111110000 00111111111111111100 0 001111000 00000001222222222233222 21
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cCCCCCCCCch--HHHHHHHHHHHHHhhhhHHHhhhhhhhcCCC-CC
Q 013802 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWSPFAPNGF--KEILTGATVVFFAYVGFDAVANSAEESKKPQ-RD 291 (436)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-k~ 291 (436)
. .-+.........++.++.+.+.-....+. .......+++. .++..+++..+++|..++...-...|+|||+ |+
T Consensus 149 ~-~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~ 227 (411)
T KOG1305|consen 149 D-SLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKK 227 (411)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHH
Confidence 1 22233333333333333333332222111 11111112222 5789999999999999999999999999996 67
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 013802 292 LPIGILGSLLICAALYVGVSLVLTGMVPYKF 322 (436)
Q Consensus 292 ~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~ 322 (436)
+.|....+......+|..........++++.
T Consensus 228 i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 228 IQRVSNIAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheecccc
Confidence 8899999999999999988877776666543
No 80
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.19 E-value=0.0078 Score=58.63 Aligned_cols=242 Identities=15% Similarity=0.054 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCC-chhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Q 013802 94 VTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-L 171 (436)
Q Consensus 94 ~~~~~ii~~i~~~~~~~~~~el~~~~p~~~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 171 (436)
++++.+++.++........ +..-|+ .| ......|..+|++-+.+.+....+..+...+.++...++.+..+.+ .
T Consensus 31 ai~aiilG~~i~~~~~~l~---~~~G~~-~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~ 106 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAA---GVIGAD-TGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL 106 (386)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHhhcc-cCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555544444333333 334454 44 5666777789999999999888888888888888888888888654 1
Q ss_pred ccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCC
Q 013802 172 FPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS 251 (436)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~ 251 (436)
++ ..+. .....++.++.......|.|...+++++...+..+..+...+....+.+.....
T Consensus 107 ~~----~~~~----------------~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 166 (386)
T TIGR02358 107 FG----EESP----------------MLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELW 166 (386)
T ss_pred cC----CCch----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhc
Confidence 11 0000 122233344566666789999999999998888777776665554443322111
Q ss_pred CCCCCchHHHHHHHHHHHHH-hhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHH
Q 013802 252 PFAPNGFKEILTGATVVFFA-YVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLS 330 (436)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~-~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~ 330 (436)
. .+.. .++..++....-. ..+....+.+++..|+||| .-++...+..+...+..+.-.......+. ++|.
T Consensus 167 ~-~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~- 237 (386)
T TIGR02358 167 N-RAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII- 237 (386)
T ss_pred C-CCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH-
Confidence 1 1111 2344333222211 2233346788888887644 55777777666666665555544433332 2333
Q ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013802 331 DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (436)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (436)
+.....+.. .+..+..+++..++.....++.+=-+..+
T Consensus 238 ~~~~~~g~~---~~~~~~~~l~~~~~n~~N~ys~~l~l~~l 275 (386)
T TIGR02358 238 SILAGAGLG---IPALLIILLSTVTTTFMDIYSAAISTGNL 275 (386)
T ss_pred HHHHhccHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333322 12333444555555455555555555544
No 81
>PRK10484 putative transporter; Provisional
Probab=98.06 E-value=0.019 Score=58.39 Aligned_cols=289 Identities=13% Similarity=0.017 Sum_probs=136.6
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchH-HHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhch
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGV-TISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~-~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (436)
.|++++|-...-..++.+++.-+.......-..|... .+.+ ...+.....++.++.--++.. .=..++|.++++|+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~--~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEV-TAAIALIILALIFLPRYLKSG--ITTIPDFLEERYDK 113 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC--CccHHHHHHHhcCc
Confidence 6889998877666666676665554332332345442 2222 222223334444443333322 24688999999998
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHH--HHHHHHHHHHH
Q 013802 137 LTAFLVFAQLMLDYHIG-AASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAP--ILLALLTIVLC 213 (436)
Q Consensus 137 ~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~ 213 (436)
......+....+.+... .+......+..++.+.+....+ ..+.+. -..+.. +..+.+.....
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~--gi~~~~-------------~~~~~~~~~~~i~~~Yt~~ 178 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELL--GISYGA-------------AIWLLVWLIGIIGAIYAVF 178 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhc--CCcHHH-------------HHHHHHHHHHHHHhhhhhh
Confidence 76666666555554443 2333333333333322100000 111110 011111 11233445556
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---------------cccCCCCCCC----CchHHHHHHHHHHHHHhhh
Q 013802 214 WGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---------------DVSNWSPFAP----NGFKEILTGATVVFFAYVG 274 (436)
Q Consensus 214 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~G 274 (436)
-|.|...+...+=.++.++..+++.+..+... +++.+....+ ..+..++.++......+.+
T Consensus 179 GGl~aV~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (523)
T PRK10484 179 GGLKAVAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWC 258 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 78888888777776665555443332222111 1111111111 1122222222211111111
Q ss_pred hHHHhhhhhh---hcCCCCChhHHHHHHHHHHHHHHHHHHHH---HHhcccccccCCCChHHHHHHHcChhHHHHHHHHH
Q 013802 275 FDAVANSAEE---SKKPQRDLPIGILGSLLICAALYVGVSLV---LTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFG 348 (436)
Q Consensus 275 ~e~~~~~~~E---~k~p~k~~p~ai~~~~~~~~v~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (436)
.-.++... .||+ |+..|+..++.....+.++...+. .....|.+..+.|..+.....+...+++.-++.+.
T Consensus 259 --~~q~~~qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ 335 (523)
T PRK10484 259 --TNQSIVQRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAV 335 (523)
T ss_pred --CCHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHH
Confidence 11222222 3664 668888887765554444432221 11223322223345566666666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013802 349 AVAGLTTTLLVGLYVQSRL 367 (436)
Q Consensus 349 ~~~~~~~~~~~~~~~~sR~ 367 (436)
++.+..++..+.+.+.|-.
T Consensus 336 ilAA~mST~~s~l~s~st~ 354 (523)
T PRK10484 336 LFGAILSTFNGFLNSASTL 354 (523)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778888777777766644
No 82
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.02 E-value=0.016 Score=55.96 Aligned_cols=256 Identities=15% Similarity=0.185 Sum_probs=127.9
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCC-CCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 89 DAGPGVTISFLLAGAASVLNALCYAELASRFPAV-VGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVS 167 (436)
Q Consensus 89 ~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~-~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 167 (436)
..|...+|..+++.++ .+.+-|++.|+-.. ..+..+-.++.+||.+++.......++............+.-++.
T Consensus 10 ~~Gy~Llw~lll~~~~----~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~l 85 (358)
T PF01566_consen 10 QYGYSLLWVLLLSNLL----KYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNL 85 (358)
T ss_pred HHCHHHHHHHHHHHHH----HHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555444 45555666665421 346777778899999999888887777777766666666655544
Q ss_pred HhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh-ccc
Q 013802 168 ILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF-EVD 246 (436)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~-~~~ 246 (436)
+.+ .|.+ ....+..+....+.....+.+++++++...+..+..+.+++..+. +.+
T Consensus 86 l~g--------~~~~----------------~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~ 141 (358)
T PF01566_consen 86 LFG--------IPLW----------------IWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPD 141 (358)
T ss_pred hcC--------CCcH----------------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 221 2222 222222222223323123445556666555555443333333222 111
Q ss_pred cc----CCC-CCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhc---CCCC---C--hhHH---HHHHHHHHHHHHHHH
Q 013802 247 VS----NWS-PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESK---KPQR---D--LPIG---ILGSLLICAALYVGV 310 (436)
Q Consensus 247 ~~----~~~-~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k---~p~k---~--~p~a---i~~~~~~~~v~y~~~ 310 (436)
.. .+. |..|. ...+...+...-+....++...+-+-..+ +++| + .+.. ...+..+..++-..+
T Consensus 142 ~~~~~~g~~~P~~p~-~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai 220 (358)
T PF01566_consen 142 WGEVARGLVVPSIPG-PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAI 220 (358)
T ss_pred HHHHhhhccCCCCcc-hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111 22222 12233333334444444443332222221 1111 1 2111 222222222222222
Q ss_pred HHHHHhccccc--ccCCCChHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013802 311 SLVLTGMVPYK--FLDEDAPLSDAFASRGL-KYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGR 373 (436)
Q Consensus 311 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 373 (436)
.++......++ +..+.+...+.++...+ ++...++.+..+.+.+++..+...+.+|.+.+.-+
T Consensus 221 ~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~ 286 (358)
T PF01566_consen 221 LIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLG 286 (358)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhc
Confidence 22112222211 22333455566676666 79999999999999999999998888888887653
No 83
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.00 E-value=0.00058 Score=67.94 Aligned_cols=240 Identities=14% Similarity=0.094 Sum_probs=113.3
Q ss_pred CcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch---HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCC-chhhhhH
Q 013802 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAY 131 (436)
Q Consensus 56 ~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~---~~~~~ii~~i~~~~~~~~~~el~~~~p~~~G-g~y~~~~ 131 (436)
+.+|+.++++.+.+=++..+....+..-... ...|-. ++++.+++.++.... .+-.+..-|+ .| ......|
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~---~~~~~~~G~r-~Gl~~~v~sR 78 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAIL---VALMGIIGPR-TGLPTMVLSR 78 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHH---HHHHTHHHHC-C---HHHHTT
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHH---HHHhcccccc-cCCCchhcch
Confidence 4577888899988766666544433333323 223322 555555555544333 3334445555 45 4556666
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHH
Q 013802 132 TAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTI 210 (436)
Q Consensus 132 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (436)
..||.+-+.+.+....+......+.++...++.+....+ .++. +.+... ..........+..+++.++...
T Consensus 79 ~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~-----~~~~~~---~~~~~~~~~~~~~~~~~~i~~~ 150 (440)
T PF02133_consen 79 ASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGS-----FLWIGN---AIIGIALPLWVCFFIFWLIQTL 150 (440)
T ss_dssp TTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------HH--------------HHHHHHHHHHHH
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-----chhhhh---hhhcchhhHHHHHHHHHHHHHH
Confidence 689988888888888887777888888888888887655 1110 000000 0000000012223334455556
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC--CCCCchHHHHHHHHHHHHHh-hhhHHHhhhhhhhcC
Q 013802 211 VLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP--FAPNGFKEILTGATVVFFAY-VGFDAVANSAEESKK 287 (436)
Q Consensus 211 i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~ 287 (436)
....|.|...+++.+...+..+..+...+......+...... ..+.....+..++....-.+ ...-..+.++.+.|+
T Consensus 151 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~ 230 (440)
T PF02133_consen 151 FAIYGMKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKS 230 (440)
T ss_dssp HHCTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--
T ss_pred HHhcCHHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCC
Confidence 677888888888888877666554444444443333211111 11111102333332222111 222233466677776
Q ss_pred CCCChhHHHHHHHHHHHHHHHH
Q 013802 288 PQRDLPIGILGSLLICAALYVG 309 (436)
Q Consensus 288 p~k~~p~ai~~~~~~~~v~y~~ 309 (436)
+ |+..|...++.....+...+
T Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~ 251 (440)
T PF02133_consen 231 D-TSAWWGFWLGFPGGFIPFVL 251 (440)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcEEEEeehhhhHHHHHHH
Confidence 4 33445555555554444433
No 84
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.93 E-value=0.024 Score=55.19 Aligned_cols=276 Identities=14% Similarity=0.089 Sum_probs=145.2
Q ss_pred HHhhhhhcchhhhchHHhhhhcCch---HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHHHHHH
Q 013802 69 IGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQ 145 (436)
Q Consensus 69 ~~i~~~ig~gi~~~~~~~~~~~G~~---~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~ 145 (436)
+.++.-.|+|=+..|...-..+|.. +.++++++++..=..+.. +.. + .||.++-..+..||+++.+....
T Consensus 16 ~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgii----ava--~-~~g~~~~l~~rv~~~f~~~f~~~ 88 (439)
T PRK15433 16 MTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVV----ALA--K-VGGGVDSLSTPIGKVAGVLLATV 88 (439)
T ss_pred HHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HHh--h-cCCCHHHHhhhcchHHHHHHHHH
Confidence 3444457889888888777778753 666666666543222211 111 1 34444445555678777765433
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 013802 146 LMLD-YHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNS 224 (436)
Q Consensus 146 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 224 (436)
..+. .... ......+....- .+.|... + . .....+..+++..+..++..+..|...++-+
T Consensus 89 i~l~IGP~~--aiPRtaavsfEm--~i~p~~~----~----------~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK 149 (439)
T PRK15433 89 CYLAVGPLF--ATPRTATVSFEV--GIAPLTG----D----------S-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGN 149 (439)
T ss_pred HHHHHhhcc--ccCCccccchhh--eeeccCC----c----------c-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHH
Confidence 2221 0000 000111000000 0111111 0 0 1122567778888888899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCC---CCCCch-HHHHHHHH----HHHHHhhhhHHHhhhhhhhcCCCCChhHHH
Q 013802 225 CMTVVKVIIVIVVIFAGAFEVDVSNWSP---FAPNGF-KEILTGAT----VVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (436)
Q Consensus 225 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~~~~~----~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (436)
++....++.++.+++.++.+...+...+ ...+.+ .++..+.. .+...|...-.-+--....||+ |++.|..
T Consensus 150 ~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t 228 (439)
T PRK15433 150 FLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYT 228 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHH
Confidence 9999999999988888887632221111 101101 12222211 1223333333333333346664 3344444
Q ss_pred HH----HHHHHHHHHHHHHHHHHhccc-cccc-CCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 297 LG----SLLICAALYVGVSLVLTGMVP-YKFL-DEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (436)
Q Consensus 297 ~~----~~~~~~v~y~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (436)
.. +.....++|......-....+ .++. +..+-.........++++..++.+...++++.+..+...++++.+.+
T Consensus 229 ~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 229 VWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 334444445444433332212 1111 11222333445667788899999999999999999998888877665
Q ss_pred h
Q 013802 371 L 371 (436)
Q Consensus 371 ~ 371 (436)
.
T Consensus 309 ~ 309 (439)
T PRK15433 309 Y 309 (439)
T ss_pred h
Confidence 3
No 85
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.93 E-value=0.028 Score=55.91 Aligned_cols=299 Identities=14% Similarity=0.086 Sum_probs=143.9
Q ss_pred CcccccchhHHHHHHhhhhhcchhhhchH--Hhh--hh------cCc--------------hHHHHHHHHHHHHHHHHHH
Q 013802 56 GLLRRLGLFELVLIGVGASVGAGIFVVTG--TVA--RD------AGP--------------GVTISFLLAGAASVLNALC 111 (436)
Q Consensus 56 ~~~r~l~~~~~~~~~i~~~ig~gi~~~~~--~~~--~~------~G~--------------~~~~~~ii~~i~~~~~~~~ 111 (436)
+.|.++|.++-+.|.++..+|.|+..-.. ... .. .+. ..+-+|.+-++.+++.++.
T Consensus 70 d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~ 149 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYF 149 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhee
Confidence 34667888999999999999988765432 111 00 110 1234555556666677766
Q ss_pred HHHhhhhCcCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCcccc
Q 013802 112 YAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFL 191 (436)
Q Consensus 112 ~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (436)
+..-...... +...|-...+...+.+|.+.-....++...+.+...-.....+..-++ ..++......
T Consensus 150 ~y~k~~~~~~-ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~--~~~Gi~~~~~--------- 217 (485)
T PF02028_consen 150 FYNKGKPLRI-SSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLS--SLFGIPNTFG--------- 217 (485)
T ss_dssp HHTS---SSG-GGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCTSSSTHH---------
T ss_pred eeecCCCCch-hhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHcCCCCchH---------
Confidence 6664443333 445555555545556777777777777666666555444444444333 1111111111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhhhhc-----------------cccc-CCCC
Q 013802 192 GGTLSINILAPILLALLTIVLCWGV-GESSVLNSCMTVVKVIIVIVVIFAGAFE-----------------VDVS-NWSP 252 (436)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~i~~~~~~~i~~~~~-----------------~~~~-~~~~ 252 (436)
....+.+++.++.+.-...|. |-.+++.++-..+.++.++.+.+.+-.. .+.+ +..+
T Consensus 218 ----~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~ 293 (485)
T PF02028_consen 218 ----LQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDP 293 (485)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TT
T ss_pred ----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 113333344444444555555 2344444444444444444443333110 0000 1112
Q ss_pred CCCCc-hHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHh-cccccc-----c--
Q 013802 253 FAPNG-FKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG-MVPYKF-----L-- 323 (436)
Q Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~-~~~~~~-----~-- 323 (436)
..+.+ |.+-+..+..+.|.--+--...++++=.| .|+++.-+...++...+...+..-.... .+..+. +
T Consensus 294 ~~~~~~w~~~WTvFYwaWWiawaPfvG~FiArISk--GRTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~ 371 (485)
T PF02028_consen 294 FGNSGQWPQDWTVFYWAWWIAWAPFVGLFIARISK--GRTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAA 371 (485)
T ss_dssp TTTTTHHHHHTHHHHHHHHHHTHHHHHHHHHHCTT--TSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHH
T ss_pred ccCcccccCCCHHHHHHHHHHHHHHHHHHHhhhcC--CcCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHH
Confidence 22333 65666666666555445555555555444 3888666555555555544443333321 111111 1
Q ss_pred -CCCC---hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013802 324 -DEDA---PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDG 375 (436)
Q Consensus 324 -~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 375 (436)
.+.+ .+...+++. ++..++....++..+....+..-+++..+..++.+|
T Consensus 372 ~~~~g~~~a~~~~l~~l---P~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~ 424 (485)
T PF02028_consen 372 ANEQGPEAALFAFLEQL---PLSKILSILFLILIFIFFVTSADSATYVLAMLSSKG 424 (485)
T ss_dssp HHHH-HHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhcchhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC
Confidence 0111 122223333 233445555555555556666777788888888765
No 86
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.88 E-value=0.034 Score=54.96 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=53.3
Q ss_pred hcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCC-chhhhhHHHhchhHHHHHHHHHHHHHHHH
Q 013802 75 VGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVG-GAYLYAYTAFNELTAFLVFAQLMLDYHIG 153 (436)
Q Consensus 75 ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~ 153 (436)
+|.|-..+..+.-+..|...+|..+++.+. ...+-|++.|+-...| |.-+-.++.+||++++.......++....
T Consensus 48 idpG~i~t~~~aGA~~Gy~LLW~llls~~~----~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~ 123 (439)
T PRK00701 48 MDPGNWATNIQGGSQFGYTLLWVILLSNLM----AMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMAT 123 (439)
T ss_pred ecchHHHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHH
Confidence 455544444444455555555555555554 4455566666543234 78889999999998887766555565555
Q ss_pred HHHHHHHHHHHHHH
Q 013802 154 AASIARSLASYVVS 167 (436)
Q Consensus 154 ~~~~~~~~~~~~~~ 167 (436)
...+....+.-++.
T Consensus 124 ~~~e~~G~a~al~l 137 (439)
T PRK00701 124 DLAEVIGAAIALKL 137 (439)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544444
No 87
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.72 E-value=0.048 Score=52.01 Aligned_cols=280 Identities=16% Similarity=0.141 Sum_probs=146.7
Q ss_pred hHHHHHHhhhhhcchhhhchHHhhhhcCch---HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHH
Q 013802 64 FELVLIGVGASVGAGIFVVTGTVARDAGPG---VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAF 140 (436)
Q Consensus 64 ~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~---~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~ 140 (436)
+..=.+.++.-.|+|=...|...-..+|.. +.+++++.++..=..+.. + .-. .||.+.=..+..||+.|.
T Consensus 8 ~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiI----a--~a~-~g~~~~~l~~~i~~~fg~ 80 (431)
T COG1114 8 IALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGII----A--VAL-YGGGVESLATRIGPWFGV 80 (431)
T ss_pred HHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHH----H--hhc-cCCCHHHHhhhccchHHH
Confidence 333344555567888888888666777753 666777766643221111 1 112 566555566667888887
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhh
Q 013802 141 LVFAQLMLD--YHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGE 218 (436)
Q Consensus 141 ~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 218 (436)
+.....++. =....+ ...+..... ...|..++..+ +...+..+++..+..++.+...|.
T Consensus 81 ~f~~~iyLsIGPffAiP---Rt~~vsfe~--~i~p~~~~~~~--------------~~l~ifs~ifF~ia~~~sl~pskl 141 (431)
T COG1114 81 LFAIAIYLSIGPFFAIP---RTGAVSFEV--GISPLLGDSSL--------------PSLFIFSVIFFAIAYLFSLNPSKL 141 (431)
T ss_pred HHHHHHHHHhcccccCC---cccchhHHH--hhhcccCCCcc--------------hHHHHHHHHHHHHHHHHHcCHHHH
Confidence 655332221 111100 000000000 02222222222 223677788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC---CCCCch-HHHHHHH----HHHHHHhhhhHHHhhhhhhhcCCCC
Q 013802 219 SSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP---FAPNGF-KEILTGA----TVVFFAYVGFDAVANSAEESKKPQR 290 (436)
Q Consensus 219 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~~~~----~~~~~~~~G~e~~~~~~~E~k~p~k 290 (436)
..|+-+++...+++.++.+.+..+.+.+.+...+ ..+..+ .++..+. ..+..+|...-.-+.-....+++ |
T Consensus 142 id~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~ 220 (431)
T COG1114 142 IDRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-K 220 (431)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-H
Confidence 9999999999999999988888766543322211 111111 1222222 22344454444333333334444 3
Q ss_pred ChhHHHHHHHHHHHHHHHHH--HHHHHhcccccccCC----CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 291 DLPIGILGSLLICAALYVGV--SLVLTGMVPYKFLDE----DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQ 364 (436)
Q Consensus 291 ~~p~ai~~~~~~~~v~y~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 364 (436)
+..|-...+-++..+.-.+. .+...+....+.... .+-+...-++..++.+..++.+...++++.+..+-..++
T Consensus 221 ~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~ 300 (431)
T COG1114 221 QIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVAC 300 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333322221 112222222222221 122333345566777788888888889998888888777
Q ss_pred HHHHHH
Q 013802 365 SRLYLG 370 (436)
Q Consensus 365 sR~l~~ 370 (436)
+.....
T Consensus 301 aefF~~ 306 (431)
T COG1114 301 AEFFSK 306 (431)
T ss_pred HHHHHH
Confidence 755443
No 88
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.70 E-value=0.056 Score=52.32 Aligned_cols=282 Identities=13% Similarity=0.055 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 013802 94 VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFP 173 (436)
Q Consensus 94 ~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (436)
...+|..+.. ...+..+|--+++-+ --=.-.+..|.-.+...++.+..-++...++........+..+.-+++
T Consensus 79 Y~iG~~~Gy~---i~~fL~A~~LRk~Gk-yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--- 151 (529)
T COG4147 79 YSIGWTGGYP---ILLFLIAEYLRKLGK-YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--- 151 (529)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhcCC-cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC---
Confidence 3444444433 455677888887766 222222333455567778888887887788888888888887777654
Q ss_pred ccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccC----
Q 013802 174 FFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSN---- 249 (436)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---- 249 (436)
.|.+ .-+.+...+....+..-|.|...|.|.+=.++.+...++..+....+.+++.
T Consensus 152 -----v~~~---------------vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~ 211 (529)
T COG4147 152 -----VPYH---------------VGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLF 211 (529)
T ss_pred -----CCce---------------eehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence 2222 2244455556666777889999998888777777766666655544321110
Q ss_pred -----CC------CCCCCch--HHHHHHHHHHHHHhhhhHHHhhhhhhh---cCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 013802 250 -----WS------PFAPNGF--KEILTGATVVFFAYVGFDAVANSAEES---KKPQRDLPIGILGSLLICAALYVGVSLV 313 (436)
Q Consensus 250 -----~~------~~~~~~~--~~~~~~~~~~~~~~~G~e~~~~~~~E~---k~p~k~~p~ai~~~~~~~~v~y~~~~~~ 313 (436)
.+ ...+.|. ++.+..+...+--..|.-..+|.--+. .| .|+..|+..|+....+.+|+...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~-~k~AR~Sv~wA~~fIg~fYi~~~~i 290 (529)
T COG4147 212 AEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPD-AKEARKSVFWATGFIGIFYILTPII 290 (529)
T ss_pred HHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1111111 234444445555556666666655433 23 2667789999999999999976555
Q ss_pred HHhc---ccc---c------------ccCC-------CChHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 013802 314 LTGM---VPY---K------------FLDE-------DAPLSDAFASRG-LKYVSVLISFGAVAGLTTTLLVGLYVQ--- 364 (436)
Q Consensus 314 ~~~~---~~~---~------------~~~~-------~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~--- 364 (436)
-... +.. . |... +.....+....+ ++|+.-++....+...++..-+...+.
T Consensus 291 g~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasa 370 (529)
T COG4147 291 GAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASA 370 (529)
T ss_pred HHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3311 110 1 1111 112222334555 577666666666666666554444433
Q ss_pred -HHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhh
Q 013802 365 -SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGL 408 (436)
Q Consensus 365 -sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 408 (436)
|+=+|.+--|+. .++. |+-..-+.+.....+++..+...
T Consensus 371 vsHDiY~~vik~~----ase~-~~v~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 371 VSHDLYAMVIKKG----ATEK-KEVRVARIAVVILGVVAILLGIL 410 (529)
T ss_pred HHhHHHHHHhCCC----CCcc-ceehhHHHHHHHHHHHHHHheec
Confidence 444444433332 2221 11234445555555555554444
No 89
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.43 E-value=0.052 Score=52.56 Aligned_cols=308 Identities=14% Similarity=0.085 Sum_probs=144.6
Q ss_pred CCCCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCc-h-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhh
Q 013802 51 TNDGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGP-G-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYL 128 (436)
Q Consensus 51 ~~~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~ 128 (436)
.+..++.||..++|+.+.+=.+..+..+-+...+..++.|-. . .+..++++-++...... +. .+ .|..|+
T Consensus 46 L~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~----ln---s~-~G~~yh 117 (572)
T KOG2466|consen 46 LKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLV----LN---SR-PGSDYH 117 (572)
T ss_pred CCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHH----Hc---cC-CCcccc
Confidence 344566789999999998766666666655555555554432 2 55555555444332221 11 22 566666
Q ss_pred hhHH-----HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCcccCCCCccccccchhhHHHHH
Q 013802 129 YAYT-----AFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAP 202 (436)
Q Consensus 129 ~~~~-----~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (436)
..-. .||-+.+-.--..-.+--...-..++...++.++.++. +++. ....|++..+. ..+....+..+
T Consensus 118 IsFpv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~-~~hipntl~~~-----~~tt~e~i~Ff 191 (572)
T KOG2466|consen 118 ISFPVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKS-FSHIPNTLGKP-----GTTTYEFIGFF 191 (572)
T ss_pred cceeeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhh-hhcCccccCCC-----CCchHHHHHHH
Confidence 5432 34433222222222222233334555556666665554 3232 12344443211 11222233334
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cCCC-CCCCCchHHHHHHHHHHHHHhhhhHHHh
Q 013802 203 ILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWS-PFAPNGFKEILTGATVVFFAYVGFDAVA 279 (436)
Q Consensus 203 ~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~G~e~~~ 279 (436)
++-++...+..++.....++...-.+......+.+.|..+.+.+. +-.+ +-...+....+..+.....++.++.+..
T Consensus 192 IFwv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~ 271 (572)
T KOG2466|consen 192 IFWVASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLI 271 (572)
T ss_pred HHHHHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhh
Confidence 444444455566777777777777777666677777777665443 1111 1222222222233334455555555444
Q ss_pred ----hhhhhhcCCCCChhHHHHHHHHHHHHH-HHHHHHHHHhcccc-cccCC---CChHHHHHHH-------cChhHHHH
Q 013802 280 ----NSAEESKKPQRDLPIGILGSLLICAAL-YVGVSLVLTGMVPY-KFLDE---DAPLSDAFAS-------RGLKYVSV 343 (436)
Q Consensus 280 ----~~~~E~k~p~k~~p~ai~~~~~~~~v~-y~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~-------~~~~~~~~ 343 (436)
..++-.|+| .+..++.++..-+ +-+..+.-...... +.+-. -+|+. ++.+ .|.+.+..
T Consensus 272 ~N~pDFsRF~ksp-----~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pld-il~~~l~~~y~~G~RAgvF 345 (572)
T KOG2466|consen 272 VNAPDFSRFAKSP-----NAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLD-ILNQWLDTNYSAGARAGVF 345 (572)
T ss_pred ccCchhHhhcCCC-----CccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHH-HHHHHhccccccccchhhh
Confidence 344444554 3333333332211 11111111100000 11111 12333 3322 24556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhh
Q 013802 344 LISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFA 382 (436)
Q Consensus 344 i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~ 382 (436)
++.....++.+++.++.- -+-.++.--+.+||++.
T Consensus 346 fi~~~f~laql~~NISan----~vaagnDl~~L~Pkyin 380 (572)
T KOG2466|consen 346 FIGFGFALAQLGTNISAN----SVAAGNDLSALLPKYIN 380 (572)
T ss_pred HHHHHHHHHHHhcchhcc----ccccchhhHhhCcceEE
Confidence 777777777777544322 22223444577887764
No 90
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.14 Score=49.88 Aligned_cols=157 Identities=16% Similarity=0.181 Sum_probs=79.1
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCC-CchhhhhHHHhch
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVV-GGAYLYAYTAFNE 136 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~-Gg~y~~~~~~~g~ 136 (436)
+|.++...--.+.-..-++-|-+....+.-+.-|....|..++ +.+..+..=|++.|.-..+ -|.-+-.+|.++|
T Consensus 14 ~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vill----s~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~ 89 (416)
T COG1914 14 RKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILL----SNLMAYILQELSARLGIVTGKGLAEAIRERYLP 89 (416)
T ss_pred HHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccc
Confidence 3444444444443333344443444333333334433433333 3444444555555543212 3567778888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 013802 137 LTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWGV 216 (436)
Q Consensus 137 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 216 (436)
++++.......+.-....-.+....+--++.+.+ .| ...+.++..+..++...+
T Consensus 90 ~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~--------ip-----------------~~~g~iItav~~~iil~~- 143 (416)
T COG1914 90 GLGILLWILAEIAGIATDIAEVAGIAIALNLLFG--------IP-----------------LIIGAVITAVDVLIILLL- 143 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------Ch-----------------HHHHHHHHHHHHHHHHHh-
Confidence 8888776666666665555555555555554332 11 223333333333332222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 013802 217 GESSVLNSCMTVVKVIIVIVVIFAGAFE 244 (436)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 244 (436)
|..++++++...+.++..+.+....+..
T Consensus 144 ~~~r~~E~~v~~l~~~~~i~~~~~~~~~ 171 (416)
T COG1914 144 KGYRLLERVVLILGLVLVILFVYVAFVA 171 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1566677777766666666555555443
No 91
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.09 E-value=0.24 Score=49.59 Aligned_cols=219 Identities=11% Similarity=0.046 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccCCCCCC---------CCchHHHHHHHH
Q 013802 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD--VSNWSPFA---------PNGFKEILTGAT 266 (436)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~ 266 (436)
..+++++++.+..+..+|.. ++.+.++.++++-++.+.+.++.+.- ++-+...+ .++..+ +..+.
T Consensus 133 v~it~~ILv~LF~iQ~~GT~---~ig~~FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~-~~~LG 208 (534)
T PF02705_consen 133 VPITIAILVGLFAIQRFGTA---KIGKLFGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIG-FFVLG 208 (534)
T ss_pred hhHHHHHHHHHHHHHhhhhh---HHHHHHhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCch-hhhcc
Confidence 56777778888888888854 55566777777777777666665431 11111111 122222 34566
Q ss_pred HHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHH
Q 013802 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346 (436)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (436)
.++.+.+|-|+.-.=-+.. .+|.+.++-..-+.-+.++--+..-+....-| -...+|+...... |+.+.+.
T Consensus 209 ~V~L~~TGaEALyADmGHf--g~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p---~~~~npFf~~~P~----~~~~p~~ 279 (534)
T PF02705_consen 209 AVFLCVTGAEALYADMGHF--GRKPIRIAWFFLVFPALLLNYFGQGALLLSHP---EAVSNPFFLLIPE----WLLWPMV 279 (534)
T ss_pred hHHHHHhhHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHccHHHHHHcCc---chhhhHHHHHhHH----HHHHHHH
Confidence 7889999999875422222 23455444333111111111111111111111 1124566655433 4444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hhhhcCC--CCCchhHHHHHHHHHHHHHhhh--CHHHHHHHHHHH
Q 013802 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSI-FAKVHPK--RHTPVHSQVWVGIVAGILAGLF--NVRVLSHILSVG 421 (436)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~~~--~~~P~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 421 (436)
+...++..-+..+...++=-+..+.-+-|.+||. ..|.|++ .+..+..+-....++++...+. +.+.+.+.++++
T Consensus 280 ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiA 359 (534)
T PF02705_consen 280 ILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIA 359 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHH
Confidence 4444444444455555666667777788999932 2233332 2444444433333333333333 888888888877
Q ss_pred HHHHHHHH
Q 013802 422 TLVGHSQF 429 (436)
Q Consensus 422 ~~~~y~~~ 429 (436)
+....++.
T Consensus 360 Vt~tM~iT 367 (534)
T PF02705_consen 360 VTGTMLIT 367 (534)
T ss_pred HHHHHHHH
Confidence 76665543
No 92
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=96.92 E-value=0.0042 Score=57.14 Aligned_cols=234 Identities=14% Similarity=0.146 Sum_probs=131.2
Q ss_pred CcccccchhHHHHHHhhhhhcchhhhc-hHHhhhhcCchHHHHHHHHHHHHHHHH----HHHHHhhhhCcC----CCCch
Q 013802 56 GLLRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPGVTISFLLAGAASVLNA----LCYAELASRFPA----VVGGA 126 (436)
Q Consensus 56 ~~~r~l~~~~~~~~~i~~~ig~gi~~~-~~~~~~~~G~~~~~~~ii~~i~~~~~~----~~~~el~~~~p~----~~Gg~ 126 (436)
+-+.+++-|++.+=+-..+-| .|.. ...+...+|..++.+.+..+.++..++ .|+.|=. |+ |---.
T Consensus 112 e~~~kI~a~qAaWNVTNAIQG--MFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~---~dGevVrvRds 186 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQG--MFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENG---EDGEVVRVRDS 186 (524)
T ss_pred CCCCccHHHHHhhhhhhhhhe--eeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCC---CCCcEEEeehh
Confidence 345689999988766554433 2332 334455667665544444443333222 2333322 11 00123
Q ss_pred hhhhHHH-hchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHH
Q 013802 127 YLYAYTA-FNELTA-FLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPIL 204 (436)
Q Consensus 127 y~~~~~~-~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (436)
|.-+.+. ++|.+| ..+...-++....++..|....++.++. -+|........|. ++.-++
T Consensus 187 YvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~---~fP~~svd~~sWm---------------~i~~a~ 248 (524)
T KOG4303|consen 187 YVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQS---CFPGLSVDKASWM---------------MITSAS 248 (524)
T ss_pred HHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhc---cCCCCCccccchh---------------hhhhHH
Confidence 4444444 666555 5555556666677777788888888877 4555444455563 344444
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC-CCCCchHHHHHHHHHHHHHhhhhHHHhhhhh
Q 013802 205 LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAE 283 (436)
Q Consensus 205 ~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~ 283 (436)
++-+.++ ...|...++.....+.+++.=++++...+.+...=.|.. -++-+...+-..+.+++|+|+..-..+++-+
T Consensus 249 LLpc~FL--k~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEG 326 (524)
T KOG4303|consen 249 LLPCSFL--KDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEG 326 (524)
T ss_pred HhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeecccccc
Confidence 4444333 456777888888877777776666665555432212211 0011111122233445678888888899999
Q ss_pred hhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 013802 284 ESKKPQRDLPIGILGSLLICAALYVGVSLVLT 315 (436)
Q Consensus 284 E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~ 315 (436)
.+|||.+ +---+-|+.+...++=........
T Consensus 327 NM~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~~f 357 (524)
T KOG4303|consen 327 NMKNPSQ-FNVMLKWSHIAAAVFKVVFGMLGF 357 (524)
T ss_pred ccCChhH-heeeeehHHHHHHHHHHHHHHhee
Confidence 9999965 666777888777777665544443
No 93
>PLN00151 potassium transporter; Provisional
Probab=96.87 E-value=0.15 Score=53.00 Aligned_cols=217 Identities=11% Similarity=0.059 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---cccCCCCCCCC---------chHHHHHHH
Q 013802 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSPFAPN---------GFKEILTGA 265 (436)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~~~~---------~~~~~~~~~ 265 (436)
..+++++++.+..+--+|. .|+...++.+.++-++.+...++... ++.-+..++|. +. .-+..+
T Consensus 275 V~Is~~ILv~LF~~Q~~GT---~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~-~gw~~L 350 (852)
T PLN00151 275 VMISVAFLVILFSVQRFGT---SKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNST-KAWSAL 350 (852)
T ss_pred hhHHHHHHHHHHHHHhccc---hhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCC-ceEEEe
Confidence 5677788888888888884 45556666666666666666665543 23222222221 11 112344
Q ss_pred HHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHH
Q 013802 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (436)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (436)
..++.+++|.|+...=-+... +|.+..+-..-+.=+.++--+..-+++..-| + ...+|+.... ..++.+.+
T Consensus 351 GgVvLciTGaEALfADLGHFg--~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~--~~~npFy~sv----P~~~~wP~ 421 (852)
T PLN00151 351 GGCVLCATGSEAMFADLGYFS--VRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-D--SAEQIFFSSV----PSSLFWPV 421 (852)
T ss_pred cceeeeeccchhhhcccCCCC--ccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHHhC----CchhHHHH
Confidence 556788999997755333332 3444444322211111111111222221111 1 1234544432 22333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hhhhcCC--CCCchhHHHHHH-HHHHHHHhhh-CHHHHHHHHHH
Q 013802 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSI-FAKVHPK--RHTPVHSQVWVG-IVAGILAGLF-NVRVLSHILSV 420 (436)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~~~--~~~P~~a~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 420 (436)
.+++.++..-+..+...++=-+..+.-+-|.+||. .-|.+++ .+..+..+-+.. +.++++.+.+ +.+.+.+.+++
T Consensus 422 ~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGi 501 (852)
T PLN00151 422 FLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGI 501 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhh
Confidence 33333333333344444445555666677899932 2233333 233333333333 3333333333 77777777766
Q ss_pred HHHHHHH
Q 013802 421 GTLVGHS 427 (436)
Q Consensus 421 ~~~~~y~ 427 (436)
++....+
T Consensus 502 AV~~vM~ 508 (852)
T PLN00151 502 AEVGVMM 508 (852)
T ss_pred hhhhhhh
Confidence 6554443
No 94
>PRK09950 putative transporter; Provisional
Probab=96.71 E-value=0.78 Score=45.97 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=20.4
Q ss_pred ccccchhHHHHHHhhhhhcchhhh
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFV 81 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~ 81 (436)
|.++|.++-+.|.++.-+|.|+.+
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllf 104 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLY 104 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHH
Confidence 678899999999999999888765
No 95
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=96.70 E-value=0.76 Score=45.65 Aligned_cols=35 Identities=14% Similarity=-0.060 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013802 136 ELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE 170 (436)
Q Consensus 136 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (436)
..+|..+-.+.+++...+.+...-..+..++.-++
T Consensus 186 G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~ 220 (537)
T COG1292 186 GPIGHAVDILAIIATLFGIATSLGLGALQLTAGLS 220 (537)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34677777777888777777766666666655443
No 96
>PLN00150 potassium ion transporter family protein; Provisional
Probab=96.35 E-value=0.53 Score=48.96 Aligned_cols=217 Identities=12% Similarity=0.147 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---cccCCCCCCC---------CchHHHHHHH
Q 013802 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSPFAP---------NGFKEILTGA 265 (436)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~~~---------~~~~~~~~~~ 265 (436)
..+++++++.+..+--+| ..|+...++.++++-++.+...++.+. ++.-+..++| ++. .-+..+
T Consensus 215 v~is~~ILv~LF~iQ~~G---T~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~-~g~~~L 290 (779)
T PLN00150 215 TIISCVILVILFSLQRFG---THKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGR-QGWESL 290 (779)
T ss_pred hhhHHHHHHHHHHHHhcc---chhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCC-ceEEEe
Confidence 557778888888888888 455566777777777776666666643 2222222222 121 112345
Q ss_pred HHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHH
Q 013802 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (436)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (436)
..++.+.+|.|+...=-+... +|.+..+-..-+.=+.++--+..-+....-| + ...+|+.... .+++.+.+
T Consensus 291 G~V~L~iTGaEALyADlGHFg--~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~--~~~npFf~~i----P~~~~~P~ 361 (779)
T PLN00150 291 GGIVLCMTGTEAMFADLGHFT--VKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-E--DVNDPFYRSL----PKPIYWPI 361 (779)
T ss_pred cceeeeecchhhhhccccCCC--ccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHHhC----CchhHHHH
Confidence 556788999998754333332 3445444332211111111111112221111 1 1234555442 23444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hhhhcCC--CCCchhHHHHHHHHHHHHH-hhh-CHHHHHHHHHH
Q 013802 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSI-FAKVHPK--RHTPVHSQVWVGIVAGILA-GLF-NVRVLSHILSV 420 (436)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~~~--~~~P~~a~~~~~~~~~~~~-~~~-~~~~~~~~~~~ 420 (436)
.+.+.++..-+..+...++=-+..+.-+-|.+|+. ..|.+++ .+..+..+-+...+.++.. +.+ +.+.+.+.+++
T Consensus 362 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGi 441 (779)
T PLN00150 362 FVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGI 441 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhh
Confidence 44433333333344444555566666677999932 2233332 2344443333333333333 322 77777777766
Q ss_pred HHHHHHH
Q 013802 421 GTLVGHS 427 (436)
Q Consensus 421 ~~~~~y~ 427 (436)
++....+
T Consensus 442 AV~~vM~ 448 (779)
T PLN00150 442 AVVGVMI 448 (779)
T ss_pred heehhhH
Confidence 6544433
No 97
>PRK09928 choline transport protein BetT; Provisional
Probab=96.33 E-value=1.6 Score=45.14 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=19.8
Q ss_pred ccccchhHHHHHHhhhhhcchhhhc
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVV 82 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~ 82 (436)
+.++|.++-+.|.++.-+|.|+.+-
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmfw 114 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMFF 114 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhheee
Confidence 5678888888888988888886553
No 98
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=95.80 E-value=2.4 Score=42.52 Aligned_cols=25 Identities=4% Similarity=0.102 Sum_probs=20.9
Q ss_pred ccccchhHHHHHHhhhhhcchhhhc
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVV 82 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~ 82 (436)
|.+++.++-+.|.++.-+|.|+.+-
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfw 107 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFW 107 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhh
Confidence 6788899999999999998887653
No 99
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.51 E-value=2 Score=43.71 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccCCCCCCC---------CchHHHHHHHH
Q 013802 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD--VSNWSPFAP---------NGFKEILTGAT 266 (436)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~ 266 (436)
..+++++++.+..+..+| ..++.+.++.++++-++.+.+.++...- ++-+...+| ++..+ +..+.
T Consensus 144 vpit~~ILv~LF~iQ~~G---T~~vG~~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~g-f~~LG 219 (622)
T PRK10745 144 VPLSIIVLTLLFMIQKHG---TGMVGKLFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVS-FFALG 219 (622)
T ss_pred HHHHHHHHHHHHHHhccc---cHHHhhhhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCce-EEEec
Confidence 567777777788888888 5566677777777777777777666432 111222222 11111 22445
Q ss_pred HHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHH
Q 013802 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346 (436)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (436)
.++.+.+|-|+.-.=-+.. .+|.+.++-..-+.=+.++--+..-+.... +.-...+|+.... ..|+.+.+.
T Consensus 220 ~V~L~vTGaEALYADmGHF--G~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~---~p~~~~NpFf~~~----P~~~~~p~v 290 (622)
T PRK10745 220 AVVLAITGVEALYADMGHF--GKFPIRLAWFTVVLPSLVLNYFGQGALLLK---NPEAIKNPFFLLA----PDWALIPLL 290 (622)
T ss_pred ceeeeccchHHHhhccCCC--CccceeeeehhhHHHHHHHHhcchHHHHhc---CchhhcCcHHHhC----ChhHHHHHH
Confidence 5678889999764433333 345554443322221111111111122211 1112245665543 234444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hhhhcCC--CCCchhHHHHHHHHHHHHHhhh--CHHHHHHHHHHH
Q 013802 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSI-FAKVHPK--RHTPVHSQVWVGIVAGILAGLF--NVRVLSHILSVG 421 (436)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~~~--~~~P~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 421 (436)
+...++..-+..+...++=.+..+.-+-|.+||. ..+.|++ .+..+..+-....+.++...+. +.+.+.+.++++
T Consensus 291 iLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiA 370 (622)
T PRK10745 291 ILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIA 370 (622)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhhh
Confidence 4444444444444455555566666778999932 2233322 3455554444444443333333 667777766666
Q ss_pred HHHHHH
Q 013802 422 TLVGHS 427 (436)
Q Consensus 422 ~~~~y~ 427 (436)
+....+
T Consensus 371 Vt~tM~ 376 (622)
T PRK10745 371 VTGTMV 376 (622)
T ss_pred heeHhH
Confidence 444433
No 100
>PLN00149 potassium transporter; Provisional
Probab=95.26 E-value=4.7 Score=42.33 Aligned_cols=221 Identities=10% Similarity=0.031 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---cccCCCCCCCCchH--------HHHHHHH
Q 013802 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSPFAPNGFK--------EILTGAT 266 (436)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~~~~~~~--------~~~~~~~ 266 (436)
..+++++++.+..+--+| ..|+...++.++++-++.+...++... ++.-+..+.|.-.. .-+..+.
T Consensus 199 v~is~~ILv~LF~~Q~~G---T~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g~~~LG 275 (779)
T PLN00149 199 VPVACIILIGLFALQHYG---THRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGGWMSLG 275 (779)
T ss_pred hHHHHHHHHHHHHHhccc---cHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCceeEeec
Confidence 357778888888888888 455666777777777776666666543 23333333331111 1123455
Q ss_pred HHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHH
Q 013802 267 VVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLIS 346 (436)
Q Consensus 267 ~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (436)
.++.+++|.|+...=-+... +|.+..+-..-+.=+.++--+..-++...-|...-+-.+|+.... .+++.+.+.
T Consensus 276 gV~L~iTG~EALyADlGHF~--~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~i----P~~~~~P~~ 349 (779)
T PLN00149 276 GILLCITGSEAMFADLGHFS--QLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSV----PEKLRWPVL 349 (779)
T ss_pred chhhcccchhhhhhcccCCC--ccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhC----CchhHHHHH
Confidence 57889999998755433332 344544433222112111111222222211111011123555432 234444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hhhhcCC--CCCchhHHHHHHHHH-HHHHhhh-CHHHHHHHHHHH
Q 013802 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSI-FAKVHPK--RHTPVHSQVWVGIVA-GILAGLF-NVRVLSHILSVG 421 (436)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~~~--~~~P~~a~~~~~~~~-~~~~~~~-~~~~~~~~~~~~ 421 (436)
+.+.++..-+..+...++=-+..+.-+-|.+||. .-|.+++ .+..+..+-+...+. +++.+.+ +.+.+.+.++++
T Consensus 350 vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiA 429 (779)
T PLN00149 350 VIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLA 429 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhh
Confidence 4433333333344444555566666677999932 2233322 234444333333333 3333332 777777777666
Q ss_pred HHHHHH
Q 013802 422 TLVGHS 427 (436)
Q Consensus 422 ~~~~y~ 427 (436)
+....+
T Consensus 430 V~~vM~ 435 (779)
T PLN00149 430 VITVML 435 (779)
T ss_pred hehHHH
Confidence 554443
No 101
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=95.14 E-value=3.8 Score=40.60 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=18.7
Q ss_pred ccccchhHHHHHHhhhhhcchhhh
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFV 81 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~ 81 (436)
|.++|.++-+.|.++.-+|.|+.+
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllf 57 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMF 57 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhh
Confidence 466788888888888888888654
No 102
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=94.80 E-value=2.9 Score=43.33 Aligned_cols=218 Identities=10% Similarity=0.079 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---cccCCCCCCC---------CchHHHHHHH
Q 013802 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSPFAP---------NGFKEILTGA 265 (436)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~~~---------~~~~~~~~~~ 265 (436)
..+++++++.+..+--+| ..++...++.++++-++.+.+.++... ++.-+..++| ++..+ +..+
T Consensus 169 v~it~~ILv~LF~iQ~~G---T~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~L 244 (688)
T TIGR00794 169 VPISCIILVLLFLIQRFG---TAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVSL 244 (688)
T ss_pred hhHHHHHHHHHHHHhccc---cHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eeec
Confidence 557777778888888888 555667777777777777766666643 2222222222 22211 2355
Q ss_pred HHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHH
Q 013802 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (436)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (436)
..++.+.+|.|+.-.=-+... +|.+..+-..-+.-+.++--+..-+....-| + ...+|+.... .+|+.+.+
T Consensus 245 G~V~L~iTGaEALyADmGHFg--~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~~----P~~~~~p~ 315 (688)
T TIGR00794 245 GGVVLSITGVEAMFADLGHFG--KLPIQLAWFTFVYPSLILCYIGQAAYLSKHP-E--AIKNPFFLSI----PDWALWPL 315 (688)
T ss_pred cchhheeccHhhhhcccCCCC--cccceeehHHHHHHHHHHHHcchHHHHhcCc-c--hhcCcHHHhC----chHHHHHH
Confidence 567889999997654333332 3445443331111111111111111111111 1 1245655543 23544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hhhhcCC--CCCchhHHHHHHHHHHHHHhhh--CHHHHHHHHHH
Q 013802 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSI-FAKVHPK--RHTPVHSQVWVGIVAGILAGLF--NVRVLSHILSV 420 (436)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~~~--~~~P~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~ 420 (436)
.+.+.++..-+..+...++=.+..+.-+-|.+||. ..+.|++ .+..+..+-....+.++...+. +.+.+.+.+++
T Consensus 316 ~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGi 395 (688)
T TIGR00794 316 FIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGI 395 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhh
Confidence 44444444444445555555566666778999932 2233332 2444444444443343333332 77777777776
Q ss_pred HHHHHHHH
Q 013802 421 GTLVGHSQ 428 (436)
Q Consensus 421 ~~~~~y~~ 428 (436)
++....++
T Consensus 396 aVt~tM~i 403 (688)
T TIGR00794 396 AVTGTFLV 403 (688)
T ss_pred hhhhhhHH
Confidence 65555443
No 103
>PLN00148 potassium transporter; Provisional
Probab=94.74 E-value=6.5 Score=41.31 Aligned_cols=216 Identities=9% Similarity=0.085 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---cccCCCCCCC---------CchHHHHHHH
Q 013802 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---DVSNWSPFAP---------NGFKEILTGA 265 (436)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~~~---------~~~~~~~~~~ 265 (436)
..+++++++.+..+--+| ..|+...++.+.++-++.+...++... ++.-+..++| ++..+ +..+
T Consensus 198 v~is~~ILv~LF~vQ~~G---T~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~L 273 (785)
T PLN00148 198 VLLACVILVGLFALQHCG---THRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WISL 273 (785)
T ss_pred hhHHHHHHHHHHHHhccc---cHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEee
Confidence 557777888888888888 455556777777766666666666543 2332333322 12111 2345
Q ss_pred HHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHH
Q 013802 266 TVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLI 345 (436)
Q Consensus 266 ~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (436)
..++.+++|.|+...=-+... +|.+.++-..-+.=+.++--+..-++...-| + ...+|+.... .+++.+.+
T Consensus 274 GgV~L~iTGaEALyADlGHFg--~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~--~~~npFf~~i----P~~~~~P~ 344 (785)
T PLN00148 274 GGILLSITGTEAMFADLGHFT--AASIRLAFATVIYPCLVVQYMGQAAFLSKNI-P--SIPNSFYDSI----PDPVFWPV 344 (785)
T ss_pred cchheeccchhhhhhhccCCC--ccceEEeeeehHHHHHHHHHcchHHHHhcCc-c--cccCcHHHhC----CchhHHHH
Confidence 557789999998755443332 3445444332211111111111222221111 1 1234555443 22333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hhhhcCC--CCCchhHHHHHHHH-HHHHHhhh-CHHHHHHHHHH
Q 013802 346 SFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSI-FAKVHPK--RHTPVHSQVWVGIV-AGILAGLF-NVRVLSHILSV 420 (436)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~~~--~~~P~~a~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 420 (436)
.+.+.++..-+..+...++=-+..+.-+-|.+||. .-|.+++ .+..+..+-+...+ ++++.+.+ +.+.+.+.+++
T Consensus 345 ~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGi 424 (785)
T PLN00148 345 FVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGL 424 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhhh
Confidence 44333333333344444555556666677999932 2333333 23444433333333 33333332 66666666666
Q ss_pred HHHHHH
Q 013802 421 GTLVGH 426 (436)
Q Consensus 421 ~~~~~y 426 (436)
++....
T Consensus 425 AV~~vM 430 (785)
T PLN00148 425 ACMTVM 430 (785)
T ss_pred heeeHH
Confidence 544443
No 104
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.49 E-value=6.4 Score=40.13 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=56.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc---------cccCCCCCCCCchHHHHHHHHHHHHHh-hhhHH
Q 013802 208 LTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV---------DVSNWSPFAPNGFKEILTGATVVFFAY-VGFDA 277 (436)
Q Consensus 208 ~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~e~ 277 (436)
+.....+|+|..+|+......+..+.++++.+-++... -..++.... +..-+..++..++|+. .|...
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~--~~~vW~~A~~Q~ffsl~ig~G~ 268 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLL--DPKVWIAALGQVFFSLSIGFGI 268 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTT--SHHHHHHHHHHHHHHTTTTSSH
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhh--HHHHHHHHHHHHhhccCCCcce
Confidence 33444678888877776666544444444444333211 012333322 2345677888888887 57777
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHH
Q 013802 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGV 310 (436)
Q Consensus 278 ~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~ 310 (436)
...++.-.|+ ++|++|...........+.++.
T Consensus 269 ~it~~Sy~~~-~~n~~~~a~~v~~~~~~~slla 300 (523)
T PF00209_consen 269 MITYGSYNKF-KNNIFRDALIVAFINTLVSLLA 300 (523)
T ss_dssp HHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcCcCCC-CccccccceEEEcCchhhhHhH
Confidence 8888887777 5778887766666666555443
No 105
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=92.47 E-value=11 Score=36.67 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=30.7
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013802 329 LSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (436)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (436)
..+.++...+++...++.+..+.+-.++..+..++..-+....
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344455667788888888888888888888777666555554
No 106
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=90.71 E-value=16 Score=34.90 Aligned_cols=227 Identities=14% Similarity=0.133 Sum_probs=122.4
Q ss_pred HHHhhhhCcCCCCchhhhhHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccc
Q 013802 112 YAELASRFPAVVGGAYLYAYTA-FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEF 190 (436)
Q Consensus 112 ~~el~~~~p~~~Gg~y~~~~~~-~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (436)
++.+++++-. =-..++.+.+ -+++.-++.+....+.......+.....+..+....++ ++..
T Consensus 96 ~~~~ar~~nA--ltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi---------dY~t------ 158 (473)
T COG4145 96 FAILAREYNA--LTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI---------DYTT------ 158 (473)
T ss_pred HHHHHHHhCC--eeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC---------Cchh------
Confidence 3444444432 2344455544 56788899999999999999888888999988886651 1110
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc-------------cccCCCCCCCCc
Q 013802 191 LGGTLSINILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV-------------DVSNWSPFAPNG 257 (436)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~ 257 (436)
.++- .-.........-|.|.......+=+..+++.-+++.+..+... |++-..|...+.
T Consensus 159 -------gL~i-fa~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~ 230 (473)
T COG4145 159 -------GLLI-FAVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADD 230 (473)
T ss_pred -------hHHH-HHHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcc
Confidence 1111 1112222334557777777666666666665555554433321 222222221121
Q ss_pred --hHHHHH-HHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHh---cccccccCCCChHHH
Q 013802 258 --FKEILT-GATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG---MVPYKFLDEDAPLSD 331 (436)
Q Consensus 258 --~~~~~~-~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~~~~~~ 331 (436)
-.+++. -...+.+...|......-.--.|| +|.+.++++.+..++.++.+.+-.+-.. +.|+ --..|.....
T Consensus 231 ~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPd-lt~~D~Vip~ 308 (473)
T COG4145 231 ILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPD-LTVVDLVIPT 308 (473)
T ss_pred cccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCC-CCccchhHHH
Confidence 012222 122233344444333333333477 5778899999888888877765544332 2332 2223444444
Q ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 332 AFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQS 365 (436)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 365 (436)
++-+...|...-++....+.+..++.++.+.-.|
T Consensus 309 lalkvlpp~~agifl~apmaAiMSTIds~L~~~s 342 (473)
T COG4145 309 LALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSS 342 (473)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555655666666666677777766654433
No 107
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=90.62 E-value=4.3 Score=41.27 Aligned_cols=224 Identities=13% Similarity=0.049 Sum_probs=107.1
Q ss_pred CchhhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHH
Q 013802 124 GGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPI 203 (436)
Q Consensus 124 Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (436)
...|+|.+++|++.........+.+..+...+...+.-+..+++..+. ..+. ..+ +.
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~--------~~~l--------------~~~-~~ 164 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI--------NLYL--------------IVV-IL 164 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc--------Ccee--------------ehH-HH
Confidence 468999999999886666666666666666655555555555553321 1110 111 11
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc----------------cc---CCCCCCCCchHHHHHH
Q 013802 204 LLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD----------------VS---NWSPFAPNGFKEILTG 264 (436)
Q Consensus 204 ~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~----------------~~---~~~~~~~~~~~~~~~~ 264 (436)
....+.....-|.|..-+.-.+=..+++.....+++.+..+.+ .. +++|...+.++.++.+
T Consensus 165 ~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~G 244 (585)
T KOG2349|consen 165 GLICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFG 244 (585)
T ss_pred HHHHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcC
Confidence 1122222334466666666555566666666666665544210 11 1111111223345555
Q ss_pred HHHHHHHhhhhHHHhhhhhhhcCC-CCChhHHHHHHHHHHHHHHHHHHHHHHhc---ccc-cc-----cC-CCChHHHHH
Q 013802 265 ATVVFFAYVGFDAVANSAEESKKP-QRDLPIGILGSLLICAALYVGVSLVLTGM---VPY-KF-----LD-EDAPLSDAF 333 (436)
Q Consensus 265 ~~~~~~~~~G~e~~~~~~~E~k~p-~k~~p~ai~~~~~~~~v~y~~~~~~~~~~---~~~-~~-----~~-~~~~~~~~~ 333 (436)
.......+.|.+-. .+..-+.-| .|+..+++........+...+....-... ..+ |. .+ +|.-+....
T Consensus 245 g~~~~l~~~~vnQ~-~VQR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV 323 (585)
T KOG2349|consen 245 GTIMWLSYYGVNQL-IVQRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFV 323 (585)
T ss_pred CcHHHHHHHhhhHH-HHhHHhccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHH
Confidence 44444555555532 222323222 35566666666555555544433322211 111 11 11 232222222
Q ss_pred HHcCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013802 334 ASRGL--KYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (436)
Q Consensus 334 ~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (436)
....+ +.+.-++..+++.+.+++..+.+.+.|-+.+.-
T Consensus 324 ~d~~~~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~eD 363 (585)
T KOG2349|consen 324 MDLMGHLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLED 363 (585)
T ss_pred HHhcCCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 22222 333345555666666676667777777766653
No 108
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=86.90 E-value=42 Score=34.92 Aligned_cols=175 Identities=16% Similarity=0.105 Sum_probs=91.3
Q ss_pred chhHHHHHHhhhhhcchhhhchH-HhhhhcCchHHHHHHH-HHHHHHHHHHHHHHhhhhCcCCCCchhhhhHH-HhchhH
Q 013802 62 GLFELVLIGVGASVGAGIFVVTG-TVARDAGPGVTISFLL-AGAASVLNALCYAELASRFPAVVGGAYLYAYT-AFNELT 138 (436)
Q Consensus 62 ~~~~~~~~~i~~~ig~gi~~~~~-~~~~~~G~~~~~~~ii-~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~-~~g~~~ 138 (436)
+..+.++-+++..+|-|=+.... ...+++|.+.++.+++ ..++++|..+.-.-++.-..+ |....|=+- =.-+-+
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~--g~v~~wrri~Pif~Gv 116 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQ--GPVSVWRRICPIFKGV 116 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcC--ChHHHHHHhChHhcCc
Confidence 66778888888899988888544 6678888775555544 445567776554444444443 655555421 111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccccccCCCcccCCCCc--------------------------
Q 013802 139 AFLVFAQLMLDYHIGAASIARSLASYVVSILE----LFPFFKENIPSWIGHGGE-------------------------- 188 (436)
Q Consensus 139 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------------------- 188 (436)
|+...+.... ...-+....+..+..++. -.|+.. +.++|..+.-.
T Consensus 117 G~a~v~~~~~----~~~Yy~viiaw~l~Yl~~sf~~~lpW~~-C~~~wnt~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (629)
T KOG3660|consen 117 GWASVVISAL----LAIYYIVILAWALYYLFSSFTSDLPWST-CNNPWNTEYCLDGTSKQNCANLTKLSNALNFNSPVAE 191 (629)
T ss_pred cHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCCChhh-cCChhcCCccccccccccccccccccchhhhccchhh
Confidence 3333222111 111222222222222221 233322 33333211110
Q ss_pred ---------------cccccchhhHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013802 189 ---------------EFLGGTLSINILAPIL-LALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAF 243 (436)
Q Consensus 189 ---------------~~~~~~~~~~~~~~~~-~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 243 (436)
..++........++.+ .+++.++..+|+|..+|+..+...+-.+.++++.+-++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvT 262 (629)
T KOG3660|consen 192 FWENRVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVT 262 (629)
T ss_pred hhhhhhcccccccccccCCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHcc
Confidence 1122222233344443 444556678899999999988888877777777766654
No 109
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=86.55 E-value=40 Score=34.34 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCC-CCCCCC------chHHHHHHHHHHH
Q 013802 197 INILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNW-SPFAPN------GFKEILTGATVVF 269 (436)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~ 269 (436)
..+....+.+++.++...|.|..+|+..++..+-.+.+.++.+-+....+..+. .-...+ ....+..+-..++
T Consensus 254 ~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqif 333 (629)
T KOG3659|consen 254 LALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIF 333 (629)
T ss_pred HHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHH
Confidence 355556666677788889999999986555555433333333333211111111 001111 1234566666666
Q ss_pred HHh-hhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 013802 270 FAY-VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVL 314 (436)
Q Consensus 270 ~~~-~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~ 314 (436)
++. .|+......+...| .+.|.-|-.+..-.+....+++..+..
T Consensus 334 fslg~GfG~L~AfaSyn~-F~NNc~rDAll~S~in~~ts~~sgfvi 378 (629)
T KOG3659|consen 334 FSLGPGFGVLIAFASYNK-FHNNCYRDALLTSIINCLTSFLSGFVI 378 (629)
T ss_pred hhcCccchhhhhhhhhcc-cccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 654 56666666665443 244555555555555555555444443
No 110
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=80.90 E-value=54 Score=31.46 Aligned_cols=94 Identities=13% Similarity=-0.041 Sum_probs=57.8
Q ss_pred hhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHH
Q 013802 63 LFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFL 141 (436)
Q Consensus 63 ~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~ 141 (436)
.|-.+..=+.++.|.|-...|-.. ..-|+. +++..++++++.-. ..=|..+-....++.-+.-+.+++..||..+.+
T Consensus 54 ~~vlfghhf~sIAGaGPI~GPi~a-a~~GwlPa~lWI~~G~if~Ga-VHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 54 KWVLFGHHFASIAGAGPIVGPILA-AQFGWLPALLWIVFGCIFAGA-VHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred hHHhhHHHHHHHhccccchHHHHH-HHhcchHHHHHHHHccHHHHH-HHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 355566666777888887777755 556765 55444445554433 333444444555524477788888999988887
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013802 142 VFAQLMLDYHIGAASIA 158 (436)
Q Consensus 142 ~g~~~~~~~~~~~~~~~ 158 (436)
..+..++..+...+...
T Consensus 132 f~~f~~~~lilV~avF~ 148 (376)
T PF02554_consen 132 FLIFIFFLLILVIAVFA 148 (376)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77666655554444433
No 111
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=76.54 E-value=86 Score=31.85 Aligned_cols=216 Identities=14% Similarity=0.113 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccCCCCCCCCchHHHH--------HHHHH
Q 013802 198 NILAPILLALLTIVLCWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEV--DVSNWSPFAPNGFKEIL--------TGATV 267 (436)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~ 267 (436)
..++.++++.+..+...|. +++.+.++.++++-++.+...++.+. +++-....+|.....++ ..+..
T Consensus 149 vpitl~IL~~LF~iQ~~GT---~~Vg~~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~vLGa 225 (627)
T COG3158 149 VPITLIILVLLFLIQRFGT---GRVGKLFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFFVLGA 225 (627)
T ss_pred HHHHHHHHHHHHHHhcccc---hhhhhhhccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEEEeee
Confidence 5677777788888888884 45556777777777777777776643 22222222222111111 12233
Q ss_pred HHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccc-cCCCChHHHHHHHcChhHHHHHHH
Q 013802 268 VFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKF-LDEDAPLSDAFASRGLKYVSVLIS 346 (436)
Q Consensus 268 ~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~ 346 (436)
++.+.+|-|+.-.=-+.. -+|.+.+|-..-..= .++.++.-.+..-..+ -...+|+...+.. |...-+.
T Consensus 226 VfLavTGaEALYADmGHf--Gr~pI~~AWf~vv~P----~L~LNY~GQGA~vL~~p~a~~npFF~~~P~----~aliP~v 295 (627)
T COG3158 226 VFLAVTGAEALYADMGHF--GRKPIRVAWFFVVLP----CLLLNYFGQGALLLSNPEAIGNPFFLLAPD----WALIPLV 295 (627)
T ss_pred eeeeeccHHHHHhhcccc--CCccHHHHHHHHHHH----HHHHHHccccceeccCcccccCcHHHhChh----hHHHHHH
Confidence 566789999764322222 235453332221110 1111221111111111 1123455544433 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh-hhhhcCC--CCCchhHHHHHHHHHHHHHhh--hCHHHHHHHHHHH
Q 013802 347 FGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSI-FAKVHPK--RHTPVHSQVWVGIVAGILAGL--FNVRVLSHILSVG 421 (436)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~~~--~~~P~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 421 (436)
+....++.-+..+...++=-+..+--|-|.+|+. ..+.+++ .+..+.++-....++.++..+ .+.+.+.+-++++
T Consensus 296 iLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiA 375 (627)
T COG3158 296 ILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIA 375 (627)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChh
Confidence 2222222222223333333444555677999932 2233322 233344443333333333333 3666666666655
Q ss_pred HHHHH
Q 013802 422 TLVGH 426 (436)
Q Consensus 422 ~~~~y 426 (436)
+....
T Consensus 376 VTgtM 380 (627)
T COG3158 376 VTGTM 380 (627)
T ss_pred eeehh
Confidence 44443
No 112
>PTZ00206 amino acid transporter; Provisional
Probab=75.76 E-value=61 Score=32.51 Aligned_cols=55 Identities=4% Similarity=-0.132 Sum_probs=43.3
Q ss_pred hHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhh
Q 013802 328 PLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFA 382 (436)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~ 382 (436)
.+.++.+...++++.++..+..++..+++..+++...+..+...-++...|+++.
T Consensus 122 sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 122 TYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 4666777777788899999999999999999999988888877665544555554
No 113
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=62.28 E-value=11 Score=32.55 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=26.3
Q ss_pred hhhhcCCC-CChhHHHHHHHHHHHHHHHHHHHHH
Q 013802 282 AEESKKPQ-RDLPIGILGSLLICAALYVGVSLVL 314 (436)
Q Consensus 282 ~~E~k~p~-k~~p~ai~~~~~~~~v~y~~~~~~~ 314 (436)
.|-.+||| |+.||+++.+++.+.++-++..+..
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~~~ 237 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVLMI 237 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 45678998 8999999999999888877655543
No 114
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=51.58 E-value=1.1e+02 Score=28.46 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=40.9
Q ss_pred CcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhc
Q 013802 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (436)
Q Consensus 56 ~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (436)
-.+++++......+.+....|.-.... .... +.-|+ ++..++.++..++.| .||.+-+.+..+|
T Consensus 87 I~~~~~k~~~~l~l~l~~~~g~~llg~--~~~~---~s~~~-~l~lG~l~~~~g~~Y----------TgGp~PlgY~gLG 150 (303)
T COG1575 87 IVRQSMKPALILSLALFLLAGLALLGV--ILAA---LSDWL-VLLLGLLCIAAGILY----------TGGPFPLGYMGLG 150 (303)
T ss_pred eecccCCHHHHHHHHHHHHHHHHHHHH--HHHH---HhhhH-HHHHHHHHHHheeee----------ccCCcCcccCCHH
Confidence 346677777666666554443221110 0011 11233 444555566666666 7999999999999
Q ss_pred hhHHH-HHHHH
Q 013802 136 ELTAF-LVFAQ 145 (436)
Q Consensus 136 ~~~g~-~~g~~ 145 (436)
....+ ..|+.
T Consensus 151 Ei~~~vffG~l 161 (303)
T COG1575 151 EIFVGVFFGPL 161 (303)
T ss_pred HHHHHHHHHHH
Confidence 86544 34544
No 115
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=50.59 E-value=22 Score=29.64 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=25.3
Q ss_pred hhhhcCCC-CChhHHHHHHHHHHHHHHHHHHHHH
Q 013802 282 AEESKKPQ-RDLPIGILGSLLICAALYVGVSLVL 314 (436)
Q Consensus 282 ~~E~k~p~-k~~p~ai~~~~~~~~v~y~~~~~~~ 314 (436)
.|..+||| |+.||+++.+++...+..++..+..
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l~v 227 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVLLV 227 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 45568998 8899999999888877776655443
No 116
>COG4146 Predicted symporter [General function prediction only]
Probab=48.19 E-value=2.6e+02 Score=26.99 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=34.2
Q ss_pred chhhhhHHHhchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Q 013802 125 GAYLYAYTAFNELTAFLVFAQLMLDYHI-GAASIARSLASYVVSILE 170 (436)
Q Consensus 125 g~y~~~~~~~g~~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 170 (436)
-.-++.++++++.-..+...++.++|.. ..+...+..+-.++++++
T Consensus 104 TIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~ 150 (571)
T COG4146 104 TIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFH 150 (571)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhc
Confidence 3567889999999999999998887754 455555666666777554
No 117
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=42.88 E-value=94 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=16.4
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhh
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFV 81 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~ 81 (436)
++..-|.++..+.+.+.+...+-.|++.
T Consensus 35 ~~~~~~~l~~~g~IG~~~v~pil~G~~l 62 (100)
T TIGR02230 35 TRSIWEGLGMFGLIGWSVAIPTLLGVAV 62 (100)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777766665554445444
No 118
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=39.63 E-value=12 Score=28.96 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=25.8
Q ss_pred cccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHH
Q 013802 57 LLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNA 109 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~ 109 (436)
-.+++.+..+++.--.-.+|.|.|...+.+.+ ++.. ....++++.++.++..
T Consensus 47 P~k~i~lavvL~~fg~Lli~lg~fl~~~~~~a-g~~~~gv~f~V~G~L~FiPGf 99 (124)
T KOG4753|consen 47 PVKEIALAVVLLVFGLLLIGLGFFLAGGRVEA-GDRSQGVFFFVLGILLFIPGF 99 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHheecceee-CCCcceEEEehhhhHhcccch
Confidence 34455554444333333467776666554443 2222 4445555555555543
No 119
>PRK09488 sdhD succinate dehydrogenase cytochrome b556 small membrane subunit; Provisional
Probab=39.40 E-value=1.9e+02 Score=22.72 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh--hcccccCCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHH
Q 013802 222 LNSCMTVVKVIIVIVVIFAGA--FEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGS 299 (436)
Q Consensus 222 ~~~~~~~~~i~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~ 299 (436)
.|++..+..+...+.+..... ...+.+.+..++.+.+...+..+......+=++-..-.+.||.-+++ ..++.....
T Consensus 18 ~QRvTAv~l~~l~~~~v~~~~~~~g~~y~~~~~~f~~p~~ai~~ll~l~~~~~H~~iGmq~VieDYV~~~-~lR~~l~~~ 96 (115)
T PRK09488 18 LVRATAIVLTLYIIYMVGFFATSGELTYEVWRGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPL-ALRLMLQLV 96 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHcchHHHHHccCch-HHHHHHHHH
Confidence 455555544433332222222 22345556556666665555555555555555566666777776653 466777777
Q ss_pred HHHHHHHHHHHHHH
Q 013802 300 LLICAALYVGVSLV 313 (436)
Q Consensus 300 ~~~~~v~y~~~~~~ 313 (436)
..+..+.|.+..+.
T Consensus 97 ~~~~l~~~~~w~~~ 110 (115)
T PRK09488 97 IVVALVVYVIYGFV 110 (115)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777755443
No 120
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=38.15 E-value=4.2e+02 Score=26.39 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=55.2
Q ss_pred hhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHH
Q 013802 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (436)
Q Consensus 128 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (436)
..+.+.+|+....+.+...+++...+........++++..... .++ .....++.++
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---------isY---------------~~~v~i~~l~ 324 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---------LSY---------------RTLVFILGGF 324 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CcH---------------HHHHHHHHHH
Confidence 4566789999999999999999999999999999999988422 111 4456666777
Q ss_pred HHHHHHhhhhhHHHHHHHH
Q 013802 208 LTIVLCWGVGESSVLNSCM 226 (436)
Q Consensus 208 ~~~i~~~g~~~~~~~~~~~ 226 (436)
...+...|.+..-++..-.
T Consensus 325 S~~lSn~G~~~II~~s~Pi 343 (439)
T PRK15433 325 SMVVSNLGLSQLIQISVPV 343 (439)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 7777778866555444433
No 121
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=36.59 E-value=1.6e+02 Score=21.12 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=32.1
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 013802 278 VANSAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTG 316 (436)
Q Consensus 278 ~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~ 316 (436)
-..+-.|.+.|=|.+.+-++.++..+..+..++...=..
T Consensus 6 ~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~ 44 (75)
T PF11998_consen 6 YARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLI 44 (75)
T ss_pred HHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999988877665543
No 122
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=35.19 E-value=97 Score=25.69 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=34.4
Q ss_pred hhcchhhhchHHhhhhcCch--HHHHHHHH--HHHHHHHHHHHHHhhhhCcC-CCCchhhhhH
Q 013802 74 SVGAGIFVVTGTVARDAGPG--VTISFLLA--GAASVLNALCYAELASRFPA-VVGGAYLYAY 131 (436)
Q Consensus 74 ~ig~gi~~~~~~~~~~~G~~--~~~~~ii~--~i~~~~~~~~~~el~~~~p~-~~Gg~y~~~~ 131 (436)
..|.+.|............. .+..++.. +...-..+++|.-|++.+-. +.|+..-|-.
T Consensus 74 ~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~e 136 (153)
T PF11947_consen 74 ALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWEE 136 (153)
T ss_pred HHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHHH
Confidence 35556666666665554432 33333333 33345788999999999854 4677665543
No 123
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=34.85 E-value=1.8e+02 Score=25.23 Aligned_cols=58 Identities=14% Similarity=0.015 Sum_probs=27.1
Q ss_pred chhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcC
Q 013802 62 GLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPA 121 (436)
Q Consensus 62 ~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~ 121 (436)
..+.+..+.+++ |.-=....-.......+.-....++.+.+........+..-.+.|.
T Consensus 97 ~i~~Va~iTiAn--GgDNigIYiP~Fa~~s~~~l~v~l~vF~ilv~v~c~la~~l~~~p~ 154 (191)
T PF03596_consen 97 LILTVAAITIAN--GGDNIGIYIPLFASLSLAELIVILIVFLILVGVWCFLAYKLARIPI 154 (191)
T ss_pred hhHHhhhhhhhc--CCCeEEEeehhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 356666666655 2111111122333334444444444444555555555555566665
No 124
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=33.45 E-value=1.3e+02 Score=20.14 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHH
Q 013802 262 LTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYV 308 (436)
Q Consensus 262 ~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~ 308 (436)
+..+-...|+|.|...-.+.-++.++.+ |...+.+-++.+++++
T Consensus 2 ~~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV 45 (56)
T PF11174_consen 2 WQVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFV 45 (56)
T ss_pred HHHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHH
Confidence 3456678899999998888888776532 3444444444443333
No 125
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=32.57 E-value=1.2e+02 Score=22.49 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=23.1
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhhchH
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTG 84 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~ 84 (436)
+++.-..+|++|...++.+..++.+.+....
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~~ 40 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVGVYLLLW 40 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567899999999998888777665543
No 126
>COG2142 SdhD Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion]
Probab=31.30 E-value=2.2e+02 Score=22.39 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=39.8
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHH
Q 013802 252 PFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGV 310 (436)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~ 310 (436)
....+.+...+..+....-.+=|+...-.+.||..+|++ .++++.....+..+.+...
T Consensus 51 ~~~s~p~~~v~~lL~l~~~l~H~~~Glr~Ii~DYi~~~~-~r~~l~~~~~~~~v~~~~~ 108 (117)
T COG2142 51 AFLANPFWKVFLLLLLVAALIHAWNGLRVIIEDYIKPEK-LRLALQILLVLALVLTGVY 108 (117)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 334555666666666667777888888999999999865 5666666666655555543
No 127
>COG4325 Predicted membrane protein [Function unknown]
Probab=31.20 E-value=4.3e+02 Score=25.63 Aligned_cols=65 Identities=8% Similarity=-0.007 Sum_probs=42.6
Q ss_pred HHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh---------CHHHHHHHHHHHHHHHHHHHhh
Q 013802 365 SRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF---------NVRVLSHILSVGTLVGHSQFLP 431 (436)
Q Consensus 365 sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~y~~~~~ 431 (436)
.-+..+++-.++-|+.+...=+ ++|..+.+.+++.+.+..+.. ..+.|+.-.++...+.|.+++.
T Consensus 101 tvvalqlaSsqfsPRll~~fmr--d~~nqvvLa~FlctFvysl~vlrtvg~e~d~~g~FIp~~avtv~lLlaiisi 174 (464)
T COG4325 101 TVVALQLASSQFSPRLLRTFLR--DVPNQVVLAIFLCTFVYSLGVLRTVGEERDGQGAFIPKVAVTVSLLLAIISI 174 (464)
T ss_pred HHHHHHHHhccCCHHHHHHHhh--cCchHHHHHHHHHHHHHHHHHHHHhhhccCccccceehHHHHHHHHHHHHHH
Confidence 3345577788888876665443 677777777777776666654 3466666667666666666553
No 128
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=28.37 E-value=6.6e+02 Score=25.75 Aligned_cols=97 Identities=13% Similarity=-0.038 Sum_probs=53.2
Q ss_pred HHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhchhHHHHHHH
Q 013802 65 ELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFA 144 (436)
Q Consensus 65 ~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~~~g~~~g~ 144 (436)
-.+.-=+.++.|.|-.+.|....+.+=+.+.+..+++++++-++==-+ -+=....++.-+.-+.+++.+|+..+.....
T Consensus 56 vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~-~L~~SvR~~G~Si~~ia~~~lG~~a~~~~~~ 134 (575)
T COG1966 56 VLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYF-SLMLSVRHGGKSIGEIAGKYLGRTAKVFFLL 134 (575)
T ss_pred hhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhh-heeeeeccCCccHHHHHHHHhhhhHHHHHHH
Confidence 344445567788898888876666553444444455555544332212 1222233313366677888888887777765
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013802 145 QLMLDYHIGAASIARSLA 162 (436)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~ 162 (436)
..++-..+..+..+...+
T Consensus 135 ~~l~iliiv~Avfa~vv~ 152 (575)
T COG1966 135 LALILLILVGAVFAAVIA 152 (575)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555544444444433333
No 129
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=24.24 E-value=4.9e+02 Score=22.78 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=33.5
Q ss_pred ccccchhHHHHHHhhhhh---cchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcC
Q 013802 58 LRRLGLFELVLIGVGASV---GAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPA 121 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~i---g~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~ 121 (436)
.+.++.++++.++++..+ +.|+ .....|...+...+..+++++.....=..+++++.+
T Consensus 123 s~~i~~~e~l~L~iAlSiDalavG~------s~~~~g~~~~~~~~~igivs~i~~~~G~~lG~~~~~ 183 (206)
T TIGR02840 123 SGNISGKEALLLGIALSLDAFGAGI------GASLLGLNPLATSILVAVMSFIFVSLGLFLGKKISK 183 (206)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHH------HHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446888999888887663 3332 234445455555555555555555544555555544
No 130
>cd03494 SQR_TypeC_SdhD Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the high potential quinine, ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. SdhD and SdhC are the two transmembrane proteins of bacterial SQRs. They contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD an
Probab=23.86 E-value=3.2e+02 Score=20.62 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=37.4
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHH
Q 013802 248 SNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVGVS 311 (436)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~ 311 (436)
+.+..+..+.+...+.........+=.+-..-++.||..+++ ..++..........+.|.+..
T Consensus 32 ~~~~~~~~~p~~~i~~~l~~~~~~~H~~~Glr~vi~DYv~~~-~lr~~l~~~~~~~l~~~~~~~ 94 (99)
T cd03494 32 EAWSGLFSSLWMKIFTLLALLALLLHAWIGLWDILTDYVKPA-GLRLLLQVLIILVLFGYLIWG 94 (99)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555566666666777888887653 355666666666666665443
No 131
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=23.47 E-value=7.4e+02 Score=24.60 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=54.1
Q ss_pred hhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHH
Q 013802 128 LYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLAL 207 (436)
Q Consensus 128 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (436)
+.+++.+|+.-..+.+....+++..+........++|+.+..+ ..+ + ....+++.++
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-------kis-Y---------------~~~v~i~~i~ 321 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-------KIS-Y---------------KVWVIIFTIF 321 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccC-h---------------HHHHHHHHHH
Confidence 4556689998889999999999999988889999999999543 111 1 3455666677
Q ss_pred HHHHHHhhhhhHHHHHHH
Q 013802 208 LTIVLCWGVGESSVLNSC 225 (436)
Q Consensus 208 ~~~i~~~g~~~~~~~~~~ 225 (436)
-..+...|.+..-++..-
T Consensus 322 S~~ian~Gl~~Ii~~s~P 339 (427)
T PF05525_consen 322 SFIIANLGLDQIIKISVP 339 (427)
T ss_pred HHHHHHhCHHHHHHHHHH
Confidence 777777886555444433
No 132
>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.
Probab=23.18 E-value=2.5e+02 Score=27.44 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=6.6
Q ss_pred cccchhHHHHHHh
Q 013802 59 RRLGLFELVLIGV 71 (436)
Q Consensus 59 r~l~~~~~~~~~i 71 (436)
-|+|.-|.++.++
T Consensus 326 ~klGlGDFiFYs~ 338 (403)
T PF01080_consen 326 IKLGLGDFIFYSV 338 (403)
T ss_dssp -SS-TTTHHHHHH
T ss_pred eeecchhHHHHHH
Confidence 3666666665554
No 133
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=22.01 E-value=2.9e+02 Score=21.71 Aligned_cols=28 Identities=4% Similarity=-0.219 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCcC
Q 013802 94 VTISFLLAGAASVLNALCYAELASRFPA 121 (436)
Q Consensus 94 ~~~~~ii~~i~~~~~~~~~~el~~~~p~ 121 (436)
.+..++++.++.++..+...-+-..+..
T Consensus 76 ~~~llilG~L~fIPG~Y~~~i~y~a~rg 103 (115)
T PF05915_consen 76 GWALLILGILCFIPGFYHTRIAYYAWRG 103 (115)
T ss_pred cchHHHHHHHHHhccHHHHHHHHHHHcC
Confidence 7777777888888888777666666665
No 134
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=21.39 E-value=7.2e+02 Score=23.71 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 297 LGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLG 370 (436)
Q Consensus 297 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 370 (436)
.++++++++++.+........-..- +.....+..+...++....+..+.+....++.+.....+++-.+.+
T Consensus 39 ~~gIivs~vlf~~~g~vim~ig~~f---~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e 109 (349)
T COG3949 39 ILGIILSTVLFTLSGAVIMTIGKKF---NATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEE 109 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh---cccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 4566777777776665554322111 1223455677777888888888888888888887777666655554
No 135
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=21.34 E-value=7.7e+02 Score=24.05 Aligned_cols=78 Identities=14% Similarity=0.003 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc-ccCCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013802 295 GILGSLLICAALYVGVSLVLTGMVPYK-FLDEDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGLG 372 (436)
Q Consensus 295 ai~~~~~~~~v~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 372 (436)
+...+.+...+.+..+...-....... +..++..+..+.++..++....+..+..++..++...++..+.+..+.+.-
T Consensus 32 Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l 110 (394)
T PF03222_consen 32 GFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLL 110 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 344444444444444443332221111 112345677788777777777777777777777777777777787777654
No 136
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=21.29 E-value=8.7e+02 Score=24.65 Aligned_cols=142 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChhHHH
Q 013802 217 GESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSPFAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGI 296 (436)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 296 (436)
|..-|...+..+..++.++...+..-...+...-....+..+..-+..+....|...|.- =...++..|+ .||+++.+
T Consensus 254 kkgLr~Agi~~l~~lall~ll~iP~~a~LR~~~tG~l~~SPf~~gIIpiI~l~F~i~Giv-YG~~sG~iks-~~Dv~~~M 331 (502)
T PF03806_consen 254 KKGLRWAGIALLAFLALLLLLLIPENAPLRSPETGSLFPSPFMKGIIPIIFLFFLIPGIV-YGIASGTIKS-DKDVVKMM 331 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCccccCCCCCcccCChHHHhHHHHHHHHHHHHHHH-HhhhhceecC-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cccccccCC--CChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Q 013802 297 LGSLLICAALYVGVSLVLTG--MVPYKFLDE--DAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVG 360 (436)
Q Consensus 297 ~~~~~~~~v~y~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 360 (436)
.-++--...+.++...+..+ .+.+.++.. .-.-.+.++..+-+....++.+..+.+.+.-..++
T Consensus 332 ~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill~a~iNLfi~S 399 (502)
T PF03806_consen 332 SKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPGIPLIIGFILLTAFINLFIGS 399 (502)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhc
No 137
>COG3768 Predicted membrane protein [Function unknown]
Probab=21.18 E-value=4.3e+02 Score=24.80 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=38.0
Q ss_pred CCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhc-CchHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 013802 54 GEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDA-GPGVTISFLLAGAASVLNALCYAELASRF 119 (436)
Q Consensus 54 ~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~-G~~~~~~~ii~~i~~~~~~~~~~el~~~~ 119 (436)
+..++++.++|.......+..+|..+-.-..+..... -..=|++|..+.+.++.+.....++.+.+
T Consensus 54 ~a~~rpr~s~~k~~~~a~~vLf~~Av~~q~~qwi~d~~qr~dWl~~~a~~v~~l~vlagv~~v~rEw 120 (350)
T COG3768 54 EAPLRPRSSFWKIMLGAGGVLFSLAVGLQSVQWIRDLFQRADWLGLGAAAVGALIVLAGVGSVVREW 120 (350)
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888999988877766665543222222222222 22356677766666666666555555544
No 138
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=20.40 E-value=3.5e+02 Score=25.99 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 013802 94 VTISFLLAGAASV 106 (436)
Q Consensus 94 ~~~~~ii~~i~~~ 106 (436)
..++-.++.++.+
T Consensus 345 TviAC~vaIL~GL 357 (406)
T KOG2736|consen 345 TVIACFVAILIGL 357 (406)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
Done!