Query 013802
Match_columns 436
No_of_seqs 181 out of 2181
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 17:23:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 5.6E-47 1.9E-51 375.6 34.9 358 55-434 4-373 (445)
2 3gia_A Uncharacterized protein 100.0 2.1E-46 7.3E-51 371.3 35.3 357 56-434 3-363 (444)
3 4djk_A Probable glutamate/gamm 100.0 2E-41 7E-46 341.5 32.0 359 53-434 5-390 (511)
4 2jln_A MHP1; hydantoin, transp 99.1 3.6E-08 1.2E-12 97.9 28.7 289 55-371 21-329 (501)
5 2xq2_A Sodium/glucose cotransp 98.4 0.00038 1.3E-08 70.4 28.9 282 58-368 48-377 (593)
6 3dh4_A Sodium/glucose cotransp 98.1 0.00045 1.5E-08 68.9 23.0 284 58-369 19-349 (530)
7 2a65_A Leutaa, Na(+):neurotran 98.0 0.017 5.7E-07 56.9 30.5 109 198-309 169-292 (519)
8 4ain_A Glycine betaine transpo 94.9 3.1 0.00011 40.7 25.8 25 57-81 92-116 (539)
9 2wsw_A BCCT family betaine/car 92.4 8.5 0.00029 37.4 32.8 25 57-81 87-111 (509)
10 2kr6_A Presenilin-1; protease, 24.3 2.8E+02 0.0096 22.3 9.2 13 59-71 88-100 (176)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=5.6e-47 Score=375.57 Aligned_cols=358 Identities=23% Similarity=0.361 Sum_probs=305.8
Q ss_pred CCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHh
Q 013802 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAF 134 (436)
Q Consensus 55 ~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~ 134 (436)
++++|++++++...+.++.++|+|+|..++. ...+|+.++++|++++++.++.+++++|+++++|+ +||.|+|++|.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~-~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPAN-LASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHH-HHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHc
Confidence 3468999999999999999999999999886 44578889999999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 013802 135 NELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (436)
Q Consensus 135 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (436)
||.+|+..+|.+++.+....+.+...+++++.. .+|.. .++ ....++++++.++++.+|++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~-------------~~~~~~~~~~~~~~~~in~~ 142 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSY---FFPIL---KDP-------------WVLTITCVVVLWIFVLLNIV 142 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---TCGGG---GSH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCccc---ccc-------------HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888888888877665 22211 111 12257788889999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCC-CCCCCc---hHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCC
Q 013802 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWS-PFAPNG---FKEILTGATVVFFAYVGFDAVANSAEESKKPQR 290 (436)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k 290 (436)
|.|..++++.+...++++.++.+++.++.+.+.+++. ++.+.+ +.+++.++...+|+|.|+|..++++||+|||+|
T Consensus 143 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r 222 (445)
T 3l1l_A 143 GPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR 222 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc
Confidence 9999999999999999999998888887766655543 233332 457888999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 291 DLPIGILGSLLICAALYVGVSLVLTGMVPYKFLD-EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL 369 (436)
Q Consensus 291 ~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 369 (436)
++||++..+..+++++|++..++.....|.+++. .++|+.++++...+++...++.+..+++.+++.++.+++.+|+++
T Consensus 223 ~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 302 (445)
T 3l1l_A 223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888887764 467999999888888888899999999999999999999999999
Q ss_pred HhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhh-------CHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 370 GLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLF-------NVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 370 ~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
+++|||.+|++|+|+||+ ++|+++++++.+++.++.++. .++.+.++.+.+.++.|.+.+...+
T Consensus 303 ~~a~dg~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~ 373 (445)
T 3l1l_A 303 AAADDGLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALL 373 (445)
T ss_dssp HHHHTTSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975 999999999999887776653 3577888888888899988776554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=2.1e-46 Score=371.29 Aligned_cols=357 Identities=25% Similarity=0.384 Sum_probs=317.9
Q ss_pred CcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhc
Q 013802 56 GLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (436)
Q Consensus 56 ~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (436)
+.+|+++.++.++++++.++|+|++..++...+.+|++.+++|++++++.++.+++++|+++++|+ +||.|+|++|.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVS-NAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHhHHHHhC
Confidence 358999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 013802 136 EL-TAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (436)
Q Consensus 136 ~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (436)
|. .+...+|.+++++....+.+...+++++...++ . ..++| ...++++++.++++.+|.+
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~~-------------~~~~~~~~~~~~~~~in~~ 142 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLIN---A---PINTF-------------NIAITEIGIVAFFTALNFF 142 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---C---CCCHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C---CCchH-------------HHHHHHHHHHHHHHHHHHH
Confidence 96 355568999999999999999999999988543 1 11111 1256788889999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCC-CCCCchHHHHHHHHHHHHHhhhhHHHhhhhhhhcCCCCChh
Q 013802 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDVSNWSP-FAPNGFKEILTGATVVFFAYVGFDAVANSAEESKKPQRDLP 293 (436)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p 293 (436)
|.|..++++.+...++++.++++++.++...+.+++.+ +.++++.+++.++...+|+|.|+|.+++++||+|||+|++|
T Consensus 143 g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip 222 (444)
T 3gia_A 143 GSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVP 222 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchh
Confidence 99999999999999999999999888888777777766 44556778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccC--CCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013802 294 IGILGSLLICAALYVGVSLVLTGMVPYKFLD--EDAPLSDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYLGL 371 (436)
Q Consensus 294 ~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 371 (436)
|++..+..+++++|++..++.....|.+++. ++.|+.++.+...+++...++.+..+++.+++.++.+++.+|+++++
T Consensus 223 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~ 302 (444)
T 3gia_A 223 RAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSL 302 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888887764 34678888887777888889999999999999999999999999999
Q ss_pred hhcCCCchhhhhhcCCCCCchhHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhHhH
Q 013802 372 GRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGILAGLFNVRVLSHILSVGTLVGHSQFLPLIY 434 (436)
Q Consensus 372 a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 434 (436)
||||.+|++|+|+|+ ++|.++++++.+++.++.++.+++.+.++.+.+.++.|.+.+...+
T Consensus 303 a~dg~lP~~f~~~~~--~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 363 (444)
T 3gia_A 303 AKDGELPEFFERKVW--FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHY 363 (444)
T ss_dssp HHHSSCCSSCCTTSC--CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHhCCCC--CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999885 5699999999999998888889999999999999999998876554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=2e-41 Score=341.48 Aligned_cols=359 Identities=19% Similarity=0.232 Sum_probs=269.6
Q ss_pred CCCCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHH-HHHHHHHHHhhh--hCcCCCCchhhh
Q 013802 53 DGEGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAAS-VLNALCYAELAS--RFPAVVGGAYLY 129 (436)
Q Consensus 53 ~~~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~-~~~~~~~~el~~--~~p~~~Gg~y~~ 129 (436)
++++++|++++++.+.++++.++| ++..+. ...+|+..++.++++.++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE--EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC--CCChhhh
Confidence 456789999999999999999986 333333 4667887666666666654 679999999999 999 7999999
Q ss_pred hHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHH
Q 013802 130 AYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLT 209 (436)
Q Consensus 130 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (436)
++|.+||.+|++.+|.+++++....+......+.++...+. .|.. ..++| ...+++++++++++
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~--~~~~~-------------~~~~~~~~~~~~~~ 142 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK-WPAL--NEDPI-------------TKTIAALIILWALA 142 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT-CGGG--TSCSS-------------HHHHHHHHHHHHHH
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cccc--ccCcH-------------HHHHHHHHHHHHHH
Confidence 99999999999999999999999988888877777755321 1211 11122 22677888999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH-HHHHHhhhhhcccc-------cCCCCCCCCc-hHHHHHHHHHHHHHhhhhHHHhh
Q 013802 210 IVLCWGVGESSVLNSCMTVVKVII-VIVVIFAGAFEVDV-------SNWSPFAPNG-FKEILTGATVVFFAYVGFDAVAN 280 (436)
Q Consensus 210 ~i~~~g~~~~~~~~~~~~~~~i~~-~~~~~i~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~G~e~~~~ 280 (436)
.+|++|.|..++++.+...++++. ++++++.++..... .++.++.++. ..+.+.++...+|+|.|+|.+++
T Consensus 143 ~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~ 222 (511)
T 4djk_A 143 LTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASAT 222 (511)
T ss_dssp HHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTG
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999988875443 44444444432111 1222222221 11344567778999999999999
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHH----HHcC--hhHHHHHHHHHHHHHHH
Q 013802 281 SAEESKKPQRDLPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAF----ASRG--LKYVSVLISFGAVAGLT 354 (436)
Q Consensus 281 ~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~i~~~~~~~~~~ 354 (436)
++||+|||+|++||++..+..+++++|++..+++....|+++...+++..+.+ +..+ .+++..++.+..+++.+
T Consensus 223 ~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 302 (511)
T 4djk_A 223 HVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVL 302 (511)
T ss_dssp GGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHH
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988876655444333 4445 57888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCCCchhHHHHHHHHHHH-HHhhhC--------HHHHHHHHHHHHHHH
Q 013802 355 TTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPVHSQVWVGIVAGI-LAGLFN--------VRVLSHILSVGTLVG 425 (436)
Q Consensus 355 ~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~~P~~a~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~ 425 (436)
++.++++.+.+|+++++||||.+|++|+|+|| +++|+++++++.++..+ +..+.+ ++.+.++.+.+.++.
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~~-~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 381 (511)
T 4djk_A 303 AEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK-NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCA 381 (511)
T ss_dssp HHHHHHTTHHHHHTCHHHHGGGCSSSCCCCCS-SSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCcccHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 59999999998544332 333334 567778888888888
Q ss_pred HHHHhhHhH
Q 013802 426 HSQFLPLIY 434 (436)
Q Consensus 426 y~~~~~~~~ 434 (436)
|.+.+..++
T Consensus 382 y~~~~~~~~ 390 (511)
T 4djk_A 382 YFMLFIGYI 390 (511)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888765543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.15 E-value=3.6e-08 Score=97.87 Aligned_cols=289 Identities=12% Similarity=0.003 Sum_probs=160.6
Q ss_pred CCcccccchhHHHHHHhhhhhcchhhhchHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCc-hhhhhHHH
Q 013802 55 EGLLRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGG-AYLYAYTA 133 (436)
Q Consensus 55 ~~~~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg-~y~~~~~~ 133 (436)
++.+|+.++++.+.+=++..+..+-+........ |...+.+++...+..+......+-++..-|+ .|- .....+..
T Consensus 21 p~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~-~Gl~~~v~~R~~ 97 (501)
T 2jln_A 21 RYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIR-WGINFTVAARMP 97 (501)
T ss_dssp CGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HCCCHHHHTTTT
T ss_pred ChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh-cCCChhhhhHhh
Confidence 3446778999999888877766555544333333 5443333333333344444444444555555 443 44577778
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q 013802 134 FNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILE-LFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVL 212 (436)
Q Consensus 134 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (436)
+|++.+.+......+..+...+......++.+...++ +++ ..+. .+..+++.++...+.
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g----~~~~----------------~v~~~i~~~l~~~~~ 157 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG----FTNL----------------PLWIVIFGAIQVVTT 157 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCH----------------HHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchH----------------HHHHHHHHHHHHHHH
Confidence 9999999888888777777777777777777766542 101 1111 233445566677778
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cCCCCCCC-CchHHHHHHHHH-HHHHhhhhHHHhhhhhhhcCC
Q 013802 213 CWGVGESSVLNSCMTVVKVIIVIVVIFAGAFEVDV--SNWSPFAP-NGFKEILTGATV-VFFAYVGFDAVANSAEESKKP 288 (436)
Q Consensus 213 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~~~~~~G~e~~~~~~~E~k~p 288 (436)
..|.|...+++++...+.++..+.+.+..+...+. ++.....+ ....+++.++.. +.+...+.-..+.++.+.|++
T Consensus 158 ~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~ 237 (501)
T 2jln_A 158 FYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVD 237 (501)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCC
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCC
Confidence 89999999999999988887777776665544332 11111111 112245544433 233334445677888888886
Q ss_pred CCC-----------hhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCChHHHHHHHcChhHH-HHHHH-HHHHHHHHH
Q 013802 289 QRD-----------LPIGILGSLLICAALYVGVSLVLTGMVPYKFLDEDAPLSDAFASRGLKYV-SVLIS-FGAVAGLTT 355 (436)
Q Consensus 289 ~k~-----------~p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~-~~~~~~~~~ 355 (436)
++. .-.+...+..+...+..+..+..... ....+|...+.+...++.. ..+.. +..+++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~ 312 (501)
T 2jln_A 238 PNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWS 312 (501)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 541 22333333333332222222221111 1223455544443333332 45555 666667766
Q ss_pred HHH-HHHHHHHHHHHHh
Q 013802 356 TLL-VGLYVQSRLYLGL 371 (436)
Q Consensus 356 ~~~-~~~~~~sR~l~~~ 371 (436)
+.. ...++.+--+..+
T Consensus 313 tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 313 TNPAANLLSPAYTLCST 329 (501)
T ss_dssp THHHHHTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHh
Confidence 655 3677777666665
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.37 E-value=0.00038 Score=70.42 Aligned_cols=282 Identities=12% Similarity=0.086 Sum_probs=139.6
Q ss_pred ccccchhHHHHHHhhhhhcchhhhc-hHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhc
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVV-TGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFN 135 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~-~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g 135 (436)
.|++++|-...-.+++.+++.-+.. ++.... .|.. .++.|. ..+.....++.+...-++.. .-..++|.++++|
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~--~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEKG--IYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHTT--CCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC--CCCcHHHHHHHcc
Confidence 5788888666555566666555544 334443 4543 333332 22222333444444444432 3578999999999
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHh
Q 013802 136 ELTAFLVFAQLMLDYH-IGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCW 214 (436)
Q Consensus 136 ~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (436)
+....+.+....+.+. ...+......+..++...+ .+.| ..+.+...+.+......
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------i~~~---------------~~i~i~~~i~~~Yt~~G 180 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------IPLM---------------YSILGLALFALVYSIYG 180 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------CCHH---------------HHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ccHH---------------HHHHHHHHHHHHHHHhc
Confidence 9887777666554443 3445555555666666443 2222 11222223334445556
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhccc----------------ccCCCCCCCC---------chHHHHHHHHHHH
Q 013802 215 GVGESSVLNSCMTVVKVIIVIVVIFAGAFEVD----------------VSNWSPFAPN---------GFKEILTGATVVF 269 (436)
Q Consensus 215 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~----------------~~~~~~~~~~---------~~~~~~~~~~~~~ 269 (436)
|.|...+...+=.+++++..+.+.+..+...+ .+.+..+.+. ++..++.+.....
T Consensus 181 Gl~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 260 (593)
T 2xq2_A 181 GLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVAN 260 (593)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHH
Confidence 88887777766666666555444433322111 1111111111 1111111111122
Q ss_pred HHhhhhH-HHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHH----HHhccc--------------cccc-CCCChH
Q 013802 270 FAYVGFD-AVANSAEESKKPQRDLPIGILGSLLICAALYVGVSLV----LTGMVP--------------YKFL-DEDAPL 329 (436)
Q Consensus 270 ~~~~G~e-~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~~~----~~~~~~--------------~~~~-~~~~~~ 329 (436)
..+.|.+ ....-.=+.||+ |+..|+..++......+.++.... .....+ ..+. +.|..+
T Consensus 261 ~~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 339 (593)
T 2xq2_A 261 LYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAY 339 (593)
T ss_dssp HHHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHH
T ss_pred HHhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHH
Confidence 2333433 233344456776 668888887776654444422111 111000 0112 234455
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 330 SDAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLY 368 (436)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 368 (436)
.... +...+++.-++.+..+.+..++..+.+.+.+-.+
T Consensus 340 p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 340 PWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 6667888878888888888888887777777554
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.13 E-value=0.00045 Score=68.94 Aligned_cols=284 Identities=12% Similarity=0.076 Sum_probs=134.8
Q ss_pred ccccchhHHHHHHhhhhhcchhhhchHHhhhhcCch-HHHHHHHHHHHHHHHHHHHHHhhhhCcCCCCchhhhhHHHhch
Q 013802 58 LRRLGLFELVLIGVGASVGAGIFVVTGTVARDAGPG-VTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNE 136 (436)
Q Consensus 58 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~~~~ii~~i~~~~~~~~~~el~~~~p~~~Gg~y~~~~~~~g~ 136 (436)
.|++++|-...-.+++.+++..+..........|.. ..+.|.. .+.....+..+...-++.. .-..++|.++++|+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~--~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEKG--IYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHTT--CCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHcC--CccHHHHHHHHcCc
Confidence 588998888877777777665555443333334543 3333332 2222333444444444432 35789999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccccCCCcccCCCCccccccchhhHHHHHHHHHHHHHHHHhh
Q 013802 137 LTAFLVFAQLMLDYHI-GAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTLSINILAPILLALLTIVLCWG 215 (436)
Q Consensus 137 ~~g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 215 (436)
....+.+....+.+.. ..+......+..++...+ .+.+ ..+.+...+.+.....-|
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------i~~~---------------~~i~i~~~i~~~Yt~~GG 152 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------IPLM---------------YSILGLALFALVYSIYGG 152 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------CCHH---------------HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHH---------------HHHHHHHHHHHHHHHhcc
Confidence 8877777665544433 334444455555555433 2222 111111122222333457
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhcc----------------cccCCCCC----CC-----CchHHHHHHHHHHHH
Q 013802 216 VGESSVLNSCMTVVKVIIVIVVIFAGAFEV----------------DVSNWSPF----AP-----NGFKEILTGATVVFF 270 (436)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~----------------~~~~~~~~----~~-----~~~~~~~~~~~~~~~ 270 (436)
.|...+...+=.++.++..+++.+..+... +++.+..+ .+ .++...+.+......
T Consensus 153 l~aV~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 232 (530)
T 3dh4_A 153 LSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANL 232 (530)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHH
Confidence 777776666666555554444433322211 01111100 01 111111111111122
Q ss_pred HhhhhH-HHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHH---HHHHhccc----------------ccccCCCChHH
Q 013802 271 AYVGFD-AVANSAEESKKPQRDLPIGILGSLLICAALYVGVS---LVLTGMVP----------------YKFLDEDAPLS 330 (436)
Q Consensus 271 ~~~G~e-~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~~~---~~~~~~~~----------------~~~~~~~~~~~ 330 (436)
.+.|.+ ....-.=..||+ |+..|+..++......+.++.. ++.....+ ++..+.|..+.
T Consensus 233 ~~~g~~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p 311 (530)
T 3dh4_A 233 YYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYP 311 (530)
T ss_dssp HHTTTTCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHH
T ss_pred HHHcCCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHH
Confidence 333332 122222224675 5678888777655433322211 11111110 11123345566
Q ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013802 331 DAFASRGLKYVSVLISFGAVAGLTTTLLVGLYVQSRLYL 369 (436)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 369 (436)
...+ ...+++.-++.+.++.+.+++..+.+.+.+-.+.
T Consensus 312 ~l~~-~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~~ 349 (530)
T 3dh4_A 312 WLTQ-FLPVGVKGVVFAALAAAIVSSLASMLNSTATIFT 349 (530)
T ss_dssp HHHT-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5555 5667777777788888888888888877775543
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.97 E-value=0.017 Score=56.88 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhhhhccc-------------ccCCCCCCCCchHHHHH
Q 013802 198 NILAPILLALLTIVLCWGV-GESSVLNSCMTVVKVIIVIVVIFAGAFEVD-------------VSNWSPFAPNGFKEILT 263 (436)
Q Consensus 198 ~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~~ 263 (436)
.+...++.+++..+..+|+ |...|..+++..+..+.++++.+-++...+ ..+|.... +...+..
T Consensus 169 ~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~~ 246 (519)
T 2a65_A 169 YIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHHH
Confidence 4444566667777888899 779999999988887777777666554322 11222221 2345788
Q ss_pred HHHHHHHHh-hhhHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHH
Q 013802 264 GATVVFFAY-VGFDAVANSAEESKKPQRDLPIGILGSLLICAALYVG 309 (436)
Q Consensus 264 ~~~~~~~~~-~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~v~y~~ 309 (436)
++..++|+. .|+.....++...|+ +.|++|...........+-++
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 888999988 478888888887776 578888777666666555443
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=94.91 E-value=3.1 Score=40.67 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=21.0
Q ss_pred cccccchhHHHHHHhhhhhcchhhh
Q 013802 57 LLRRLGLFELVLIGVGASVGAGIFV 81 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~ig~gi~~ 81 (436)
.|.++|.++-+.|.++.-+|.|+.+
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhee
Confidence 3667889999999999999988765
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=92.38 E-value=8.5 Score=37.36 Aligned_cols=25 Identities=4% Similarity=0.100 Sum_probs=20.6
Q ss_pred cccccchhHHHHHHhhhhhcchhhh
Q 013802 57 LLRRLGLFELVLIGVGASVGAGIFV 81 (436)
Q Consensus 57 ~~r~l~~~~~~~~~i~~~ig~gi~~ 81 (436)
.|.++|.++-+.|.++.-+|.|+.+
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhh
Confidence 4667889999999999999888655
No 10
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=24.28 E-value=2.8e+02 Score=22.31 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=8.0
Q ss_pred cccchhHHHHHHh
Q 013802 59 RRLGLFELVLIGV 71 (436)
Q Consensus 59 r~l~~~~~~~~~i 71 (436)
=|++.-|.++.++
T Consensus 88 ikLGLGDFIFYSv 100 (176)
T 2kr6_A 88 VKLGLGDFIFYSV 100 (176)
T ss_dssp CSSCTTTHHHHHH
T ss_pred ccccccCeeehHH
Confidence 3667666666554
Done!