Query 013803
Match_columns 436
No_of_seqs 189 out of 672
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:24:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hu3_A EIF4GII; heat repeat, t 100.0 8.2E-58 2.8E-62 446.1 22.5 248 128-378 5-260 (260)
2 2vso_E Eukaryotic initiation f 100.0 5.4E-54 1.8E-58 424.0 24.1 259 97-361 3-284 (284)
3 3rk6_A Polyadenylate-binding p 100.0 2.6E-48 9E-53 373.9 13.1 204 129-355 14-234 (234)
4 2i2o_A EIF4G-like protein; pro 100.0 1.8E-43 6.2E-48 338.2 13.4 195 143-364 9-213 (224)
5 1uw4_B UPF2, regulator of nons 99.7 1.9E-15 6.4E-20 145.9 19.6 210 134-377 4-239 (248)
6 1h2v_C 80 kDa nuclear CAP bind 99.0 1E-08 3.4E-13 113.3 18.2 194 133-361 7-227 (771)
7 4gmj_A CCR4-NOT transcription 96.1 0.76 2.6E-05 43.5 20.1 189 133-354 6-201 (229)
8 4b89_A General negative regula 95.9 0.43 1.5E-05 45.7 17.3 188 133-354 33-224 (249)
9 3pev_B Nucleoporin GLE1; RECA, 89.5 7.6 0.00026 38.0 14.8 203 131-352 41-285 (297)
10 3u0r_A Apoptosis inhibitor 5; 86.3 8.7 0.0003 40.2 13.4 170 121-315 166-360 (507)
11 2rg8_A Programmed cell death p 41.9 1.2E+02 0.0041 26.6 8.9 69 124-198 3-73 (165)
12 3g2s_A C-terminal fragment of 35.0 2.2E+02 0.0075 24.5 9.6 91 262-359 29-128 (149)
13 1u84_A Hypothetical protein; s 33.8 67 0.0023 25.9 5.3 63 133-199 8-77 (90)
14 1juq_A ADP-ribosylation factor 30.8 2.2E+02 0.0077 25.0 8.9 91 262-359 31-130 (171)
15 1mhq_A ADP-ribosylation factor 28.6 2.2E+02 0.0075 24.4 8.2 90 263-359 20-118 (148)
16 1ug3_A EIF4GI, eukaryotic prot 24.6 2.1E+02 0.0072 27.7 8.2 69 124-198 4-74 (339)
17 2ion_A PDCD4, programmed cell 21.2 3.9E+02 0.013 22.9 10.3 64 133-198 7-73 (152)
18 1elk_A Target of MYB1; superhe 20.3 4.1E+02 0.014 22.8 8.6 90 263-357 35-130 (157)
No 1
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=100.00 E-value=8.2e-58 Score=446.05 Aligned_cols=248 Identities=42% Similarity=0.729 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh-cCCCCCCc
Q 013803 128 RMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG-ELPDFSED 206 (436)
Q Consensus 128 ~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~-~lp~~~~~ 206 (436)
...+.+++++|++|||||||+||+.|+.+|+++++.+.+.++.||++||+||+.||+|++|||+||..|+. .+|.....
T Consensus 5 ~~~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~ 84 (260)
T 1hu3_A 5 NIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKP 84 (260)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-----
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCC
Confidence 35677899999999999999999999999999999999999999999999999999999999999999987 56755434
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHhhhh-------cchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcH
Q 013803 207 NEKITFKRLLLNKCQEEFERGEREQEEANKA-------DKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTE 279 (436)
Q Consensus 207 ~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~-------~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~ 279 (436)
+.+..||++||++||.+|++.+......++. ..+.+..+..+|+++.+.+.|++++|+|+||||||+++|+++
T Consensus 85 ~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~ 164 (260)
T 1hu3_A 85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE 164 (260)
T ss_dssp ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred ccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCH
Confidence 4578899999999999999987542211110 001111223345556667889999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHcCC
Q 013803 280 RIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKW 359 (436)
Q Consensus 280 kII~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dLiDLR~nnW 359 (436)
+||++||..||. +|+|++|||+|.||++||+.|+.+.++..|+.||.+|+.++.+.++|+|+||||+||+|||++||
T Consensus 165 ~i~~~~l~~Ll~---~~~e~~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR~~~W 241 (260)
T 1hu3_A 165 AIMHDCVVKLLK---NHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNW 241 (260)
T ss_dssp HHHHHHHHHHHH---SCSHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999998 59999999999999999999998777789999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHHH
Q 013803 360 QQRRKVEGPKKIEEVHRDA 378 (436)
Q Consensus 360 ~~r~~~~~pkti~eih~ea 378 (436)
++++.+.|||||+|||+||
T Consensus 242 ~~~~~~~~pkti~~i~~ea 260 (260)
T 1hu3_A 242 VSRRADQGPKTIEQIHKEA 260 (260)
T ss_dssp CC-----------------
T ss_pred CCCccccCCCcHHHHHhhC
Confidence 9999999999999999997
No 2
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=100.00 E-value=5.4e-54 Score=424.04 Aligned_cols=259 Identities=27% Similarity=0.454 Sum_probs=197.3
Q ss_pred CccCcCCCcccccchhhhhhhcccccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhccc-----cChHHHHHH
Q 013803 97 NDNHERNDKKHRNSRDKEIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNI-----DNAVTLAGV 171 (436)
Q Consensus 97 ~~~~~r~~~~~~~~r~~~~r~~~~g~~~~s~~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i-----~~~e~L~~V 171 (436)
..+.+||+|+|+..+ .+...+++|.. ++..+.+++++|++|||||||+||+.|+.+|+.+++ .+.+.|+.|
T Consensus 3 ~~s~~~w~P~~~~~~-~~~~~~~~~~~---~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~v 78 (284)
T 2vso_E 3 VPSANRWVPKFKSKK-TEKKLAPDGKT---ELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAV 78 (284)
T ss_dssp ----CCCCCC----------------C---CCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHH
T ss_pred CCCCCCCCChhhhcc-cccccCCCccc---ccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHH
Confidence 346789999999664 33334455532 223345899999999999999999999999999876 678999999
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHHHHhcCCC-CCCc-----hhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhh-
Q 013803 172 VSQIFDKALMEPTFCEMYANFFYFLAGELPD-FSED-----NEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIK- 244 (436)
Q Consensus 172 I~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~-~~~~-----~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~- 244 (436)
|++||+||+.||+|++|||+||..|+..+|. +... .+...||++||++||++|++.+.+.........+.+.+
T Consensus 79 i~~If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~ 158 (284)
T 2vso_E 79 IEQIFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEM 158 (284)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhh
Confidence 9999999999999999999999999988763 3211 13568999999999999999864321110000011111
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHHHhhhccCcc----
Q 013803 245 QTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQY-ENPDEEDVEALCILMSTIGEMIDHPK---- 319 (436)
Q Consensus 245 ~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~-~~p~Ee~IE~Lc~LL~tiG~~Ld~~k---- 319 (436)
+++|+ |++.+.|++++|+|+||||||+++|++++||++||..||.+. ..|+|++|||||.||+|||+.|+++.
T Consensus 159 ~~~e~--~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~ 236 (284)
T 2vso_E 159 MSEEY--YAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTG 236 (284)
T ss_dssp CCTTH--HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC----
T ss_pred hhhHH--HHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhccccccc
Confidence 23332 456788999999999999999999999999999999999731 26999999999999999999999753
Q ss_pred -----chHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHc-CCcc
Q 013803 320 -----AKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKN-KWQQ 361 (436)
Q Consensus 320 -----~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dLiDLR~n-nW~~ 361 (436)
++..|+.||++|+.++.+.++|+||||||+||+|||+| ||++
T Consensus 237 ~~~~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dlidLR~n~~W~~ 284 (284)
T 2vso_E 237 QATLEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWNS 284 (284)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC-
T ss_pred ccchhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence 36799999999999998899999999999999999996 9985
No 3
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-48 Score=373.95 Aligned_cols=204 Identities=24% Similarity=0.402 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHhc---cccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCC
Q 013803 129 MRNLKWHIECRGDIGRLN--APNFKKLFEQVKAV---NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDF 203 (436)
Q Consensus 129 ~~~~kl~r~Vk~ILNKLT--penFd~i~~qL~~l---~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~ 203 (436)
+|...+.++|++|||||| |+||+.++++|+++ .+++.+.|+.||++||+||++||+||+|||+||+.|+..++..
T Consensus 14 ~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~ 93 (234)
T 3rk6_A 14 GRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 93 (234)
T ss_dssp ----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCC
T ss_pred cchHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCC
Confidence 445679999999999999 99999999999987 7889999999999999999999999999999999999887643
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------c
Q 013803 204 SEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKK--------K 275 (436)
Q Consensus 204 ~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~--------~ 275 (436)
+ +...||++||++||.+|++.++.. +. + .+.|+|++|+|+||||||++ +
T Consensus 94 ~---~~~~Fr~lLL~rcQ~eFe~~~~~~----~~---------d-------~~~k~r~lg~i~FIgELf~~l~~~~~~~~ 150 (234)
T 3rk6_A 94 P---QSGNFRQLLLQRCRTEYEVKDQAA----KG---------D-------EVTRKRFHAFVLFLGELYLNLEIKGTNGQ 150 (234)
T ss_dssp C---TTCCHHHHHHHHHHHHHTTHHHHT----SS---------C-------HHHHHHHHHHHHHHHHHHHHCCEECTTSS
T ss_pred C---chhHHHHHHHHHHHHHHHhhHHhh----hc---------c-------HHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 3 356899999999999999987431 11 1 13578999999999999998 8
Q ss_pred CCcHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHHhhhccC---ccchHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 013803 276 MLTERIMHECIKKLLGQ-YENPDEEDVEALCILMSTIGEMIDH---PKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDS 351 (436)
Q Consensus 276 vLs~kII~~cI~~LL~~-~~~p~Ee~IE~Lc~LL~tiG~~Ld~---~k~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dL 351 (436)
|++++||+.||.+||.. ..+|+|++|||+|.||++||+.||+ ++++..||.||++|+.++.+.++|+||||||+||
T Consensus 151 ~l~e~I~~~ci~~Ll~~l~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dl 230 (234)
T 3rk6_A 151 VTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKL 230 (234)
T ss_dssp EECCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999998874 2469999999999999999999996 4677899999999999999899999999999999
Q ss_pred HHHH
Q 013803 352 IELR 355 (436)
Q Consensus 352 iDLR 355 (436)
+|||
T Consensus 231 ieLR 234 (234)
T 3rk6_A 231 VELR 234 (234)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9997
No 4
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=100.00 E-value=1.8e-43 Score=338.22 Aligned_cols=195 Identities=23% Similarity=0.406 Sum_probs=166.0
Q ss_pred cCCCCCCHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHH
Q 013803 143 GRLNAPNFKKLFEQVKAVNID--NAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKC 220 (436)
Q Consensus 143 NKLTpenFd~i~~qL~~l~i~--~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~FR~~LL~rc 220 (436)
|..+.++|+..+.+++...+. +...|++||++||+||++||+||+|||+||.+|+...+. ..+++.||++||++|
T Consensus 9 ~~~~i~~f~~~~q~ll~~~~~~~~~~~l~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~---~~g~~~Fr~~LLn~c 85 (224)
T 2i2o_A 9 EDYKIQSFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAK---QTNGSVFRRNLLNRL 85 (224)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHH---HHSCCHHHHHHHHHH
T ss_pred cccchhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccc---cccchHHHHHHHHHH
Confidence 345677888888888776543 455789999999999999999999999999999876532 123556999999999
Q ss_pred HHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhc----c--CCc-HHHHHHHHHHHhcCC
Q 013803 221 QEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKK----K--MLT-ERIMHECIKKLLGQY 293 (436)
Q Consensus 221 Q~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~----~--vLs-~kII~~cI~~LL~~~ 293 (436)
|++|++.. +.+.+.|+|++|+|+||||||++ + +++ ++||+.|+..||...
T Consensus 86 Q~eFe~~e-----------------------e~~~~~k~r~lG~i~FIgELf~~l~~~~~~~~~l~~i~~~cl~~Ll~~~ 142 (224)
T 2i2o_A 86 QQEFKARE-----------------------ETRKRSTQEWVCLVSFICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSD 142 (224)
T ss_dssp HHHHHTHH-----------------------HHHHHCHHHHHHHHHHHHHHHHHSCBTTBCCGGGHHHHHHHHHHHTSHH
T ss_pred HHHHHChH-----------------------HHHHHHHHHHhHHHHHHHHHHhHhcccCcchHHHHHHHHHHHHHHhccC
Confidence 99999852 12346789999999999999999 8 456 889999999999753
Q ss_pred CCCChhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHH-HhhCCCCChHHHHHHHHHHHHHHcCCccccc
Q 013803 294 ENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEK-LSNNMKLSSRVRLMLKDSIELRKNKWQQRRK 364 (436)
Q Consensus 294 ~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~-l~~~~~lS~RIRFmI~dLiDLR~nnW~~r~~ 364 (436)
..|+|++|||+|+||+|||+.||++. +..||.||.+|++ ++++.++|+||||||+||||||++||++++.
T Consensus 143 ~~p~Ee~lEcl~~LL~tvG~~Ld~~~-~~~md~~f~~l~~~l~~~~~ls~RiRfml~dlieLR~~~W~~~~~ 213 (224)
T 2i2o_A 143 ALKNEEEVDCLVLQLHRIGDQLEKMN-VQLMDELFNLLRDGFLLQEDLSSMGRLLLLEILEFRAGGWKLSDT 213 (224)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHCCCCCCch
Confidence 35899999999999999999999753 4899999999999 7888899999999999999999999999853
No 5
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.68 E-value=1.9e-15 Score=145.92 Aligned_cols=210 Identities=15% Similarity=0.271 Sum_probs=147.4
Q ss_pred HHHHHHHhh-cCCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchh--hHHHHHHHHHHhcCCCCCCchhhh
Q 013803 134 WHIECRGDI-GRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFC--EMYANFFYFLAGELPDFSEDNEKI 210 (436)
Q Consensus 134 l~r~Vk~IL-NKLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs--~mYA~LC~~L~~~lp~~~~~~~~~ 210 (436)
++.-|+.+| -.|+..+.+.++.+|..++-.+.+..+.+++. |-|+-. -.|. ...|.|...|...- .
T Consensus 4 ~~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~-l~~~~~-~ky~nI~~lA~ll~~L~~~~---------~ 72 (248)
T 1uw4_B 4 LQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICC-MINIWN-VKYNSIHCVANLLAGLVLYQ---------E 72 (248)
T ss_dssp HHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHH-HHCGGG-SCGGGHHHHHHHHHHHTTTC---------H
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHH-hcchhh-cccchHHHHHHHHHHHHhhC---------h
Confidence 355667777 78888999999999999988877755444443 333321 2343 34466666665432 2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHh
Q 013803 211 TFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLL 290 (436)
Q Consensus 211 ~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL 290 (436)
.|--.++...-+....+.+.. ..+..++.++.|+||||||+.+|++..+|++|+-.|+
T Consensus 73 ~~~i~vVD~vlE~Ir~gLE~n----------------------~~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li 130 (248)
T 1uw4_B 73 DVGIHVVDGVLEDIRLGMEVN----------------------QPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFT 130 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------------------CGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcC----------------------cHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 343444444433333222110 0134567899999999999999999999999999999
Q ss_pred cCCCC-----CChhh-------HHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHh----------hCCCCChHHHHHH
Q 013803 291 GQYEN-----PDEED-------VEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLS----------NNMKLSSRVRLML 348 (436)
Q Consensus 291 ~~~~~-----p~Ee~-------IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~----------~~~~lS~RIRFmI 348 (436)
. +.. |++.+ |.++|.||.|||..++....+..||.|+..++... +...+|.+|+||+
T Consensus 131 ~-fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~~~~~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l 209 (248)
T 1uw4_B 131 S-FGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMI 209 (248)
T ss_dssp H-TTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHH
T ss_pred c-CCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHH
Confidence 6 222 24555 99999999999999998777889999999998764 2456899999999
Q ss_pred HHHHHH-HHcCCccccccCCCCChHHHHHH
Q 013803 349 KDSIEL-RKNKWQQRRKVEGPKKIEEVHRD 377 (436)
Q Consensus 349 ~dLiDL-R~nnW~~r~~~~~pkti~eih~e 377 (436)
+|++++ |.+-|..+.-++.+..+++|.++
T Consensus 210 ~D~~~~lrp~~~~~~~~eEa~~~v~~le~~ 239 (248)
T 1uw4_B 210 SDTLELLRPKIKLCNSLEESIRQVQDLERE 239 (248)
T ss_dssp HHHHHHHCTTCCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcccCCHHHHHHHHHHHHHH
Confidence 999998 76666655555666666666443
No 6
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=98.98 E-value=1e-08 Score=113.33 Aligned_cols=194 Identities=13% Similarity=0.176 Sum_probs=147.6
Q ss_pred HHHHHHHHhhcCCCC---CCHHHHHHHHHhccccC-hHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchh
Q 013803 133 KWHIECRGDIGRLNA---PNFKKLFEQVKAVNIDN-AVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNE 208 (436)
Q Consensus 133 kl~r~Vk~ILNKLTp---enFd~i~~qL~~l~i~~-~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~ 208 (436)
..+..+++++-||+. .++..-+..|...-..+ ...-..+++.|+.-++..|.++.+||.|...++...|
T Consensus 7 ~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~p------- 79 (771)
T 1h2v_C 7 ETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNY------- 79 (771)
T ss_dssp ---CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCH-------
T ss_pred cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCCh-------
Confidence 356778889999987 55555555554431112 2334458999999999999999999999999987654
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 013803 209 KITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKK 288 (436)
Q Consensus 209 ~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~ 288 (436)
.|...++.++...|+...... .++++...++|||+|++.+|+++..+..++..
T Consensus 80 --e~G~~lv~~l~~~f~~~l~~~-------------------------~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~ 132 (771)
T 1h2v_C 80 --NFGGEFVEAMIRQLKESLKAN-------------------------NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFEN 132 (771)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHcc-------------------------ChHHHHHHHHHHHHhccCCeecHHHHHHHHHH
Confidence 566888888888888765421 13467889999999999999999999999999
Q ss_pred HhcCCC---CCC---hhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCC-C----------------CChHHH
Q 013803 289 LLGQYE---NPD---EEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNM-K----------------LSSRVR 345 (436)
Q Consensus 289 LL~~~~---~p~---Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~-~----------------lS~RIR 345 (436)
|+.... .|. +..+.|++..|..+|+.|-. +.+..++.+|++++.++.+. + ...++.
T Consensus 133 Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e-~~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~~~~~~l~ 211 (771)
T 1h2v_C 133 FVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYE-KKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLD 211 (771)
T ss_dssp HHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSCCCCBHHH
T ss_pred HHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCCchhhHHH
Confidence 997421 122 56889999999999999974 34577899999999865322 2 247999
Q ss_pred HHHHHHHHHHHcCCcc
Q 013803 346 LMLKDSIELRKNKWQQ 361 (436)
Q Consensus 346 FmI~dLiDLR~nnW~~ 361 (436)
+|+..|..+|+++|..
T Consensus 212 ~L~~ql~~lr~~~w~~ 227 (771)
T 1h2v_C 212 CLWAQIQKLKKDRWQE 227 (771)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHCCCCC
Confidence 9999999999999975
No 7
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=96.13 E-value=0.76 Score=43.54 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHH-HHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhH
Q 013803 133 KWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQ-IFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKIT 211 (436)
Q Consensus 133 kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~l-IfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~ 211 (436)
.++.+|..|+|.||++|+++-++++.++-- ++...=++.- |.++|-.||+|-.+|++|+..|.. ..
T Consensus 6 ~v~dki~Fi~NNls~~N~~~k~~elk~~l~--~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~-----------~~ 72 (229)
T 4gmj_A 6 NIQEKIAFIFNNLSQSNMTQKVEELKETVK--EEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKN-----------PE 72 (229)
T ss_dssp HHHHHHHHHHHSCCSSTHHHHHHHHHHHSC--GGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTC-----------HH
T ss_pred HhhhhheeehhcCCHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhCh-----------HH
Confidence 588999999999999999999999987422 3333345544 455588899999999999988742 12
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhc
Q 013803 212 FKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLG 291 (436)
Q Consensus 212 FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~ 291 (436)
|-+.+++. .|.....-. ..++. ..+..| + ...-+.=.+||.|-.-.=.+...-+-.+..||-
T Consensus 73 l~~~vl~~---T~~~i~~LL-~s~~~------~~~~~e----R----~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~ 134 (229)
T 4gmj_A 73 FNKMVLNE---TYRNIKVLL-TSDKA------AANFSD----R----SLLKNLGHWLGMITLAKNKPILHTDLDVKSLLL 134 (229)
T ss_dssp HHHHHHHH---HHHHHHHHH-TSCCC------TTCHHH----H----HHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHH-hhccc------ccchHH----H----HHHHHHHHHHHHHHHccCCCchhcccCHHHHHH
Confidence 33333332 222221110 00000 011112 1 112233356777755431000000011222221
Q ss_pred C-CC-CC--ChhhHHHHHHHHHHHh--hhccCccchHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 013803 292 Q-YE-NP--DEEDVEALCILMSTIG--EMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIEL 354 (436)
Q Consensus 292 ~-~~-~p--~Ee~IE~Lc~LL~tiG--~~Ld~~k~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dLiDL 354 (436)
+ ++ .. =..-|-.+|++|..+- +.+. | ..+++-.++.-|.++-....+.--++|=|+-|..-
T Consensus 135 eay~~g~~rL~~viPFVcKvLe~~~~S~iFk-P-PNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~ 201 (229)
T 4gmj_A 135 EAYVKGQQELLYVVPFVAKVLESSIRSVVFR-P-PNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKN 201 (229)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHTTTTCTTTS-T-TCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHCCCceEEEeehhHHHHHHhcccCCcCC-C-CChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHH
Confidence 0 00 00 0124556677777773 2333 3 23788899999999988888889999999988763
No 8
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=95.88 E-value=0.43 Score=45.70 Aligned_cols=188 Identities=9% Similarity=0.108 Sum_probs=110.9
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHH-HHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhH
Q 013803 133 KWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQ-IFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKIT 211 (436)
Q Consensus 133 kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~l-IfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~ 211 (436)
.+..+|..++|.||++|++.-++++.++- +++...=++.- |.++|..||+|-.+|.+|+..+... .
T Consensus 33 ~v~dki~Fi~NNls~~Nl~~k~~el~~~l--~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~-----------~ 99 (249)
T 4b89_A 33 DVVEKVLFVLNNVTLANLNNKVDELKKSL--TPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSG-----------L 99 (249)
T ss_dssp HHHHHHHHHHHHCCTTTHHHHHHHHHHHC--CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH-----------H
T ss_pred HHHhhhhhhhhcCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCH-----------H
Confidence 38899999999999999999999998753 23455556666 4557999999999999999998532 2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhc
Q 013803 212 FKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLG 291 (436)
Q Consensus 212 FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~ 291 (436)
+-+.+++.. |.....-. + .+ .+... | |...-+.=.+||.|-.-.=-+...-+-.+..||-
T Consensus 100 L~~~vl~~T---~~~i~~LL---~-~~---~i~~~--e--------Rs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~ 159 (249)
T 4b89_A 100 LHQFMVNVT---LRQLFVLL---S-TK---DEQAI--D--------KKHLKNLASWLGCITLALNKPIKHKNIAFREMLI 159 (249)
T ss_dssp HHHHHHHHH---HHHHHHHH---T-BS---CGGGS--C--------HHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHh---h-hc---ccChH--H--------HHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHH
Confidence 222332211 11111100 0 00 01000 1 1222234456777765431000000011222221
Q ss_pred C-CC-CCChhhHHHHHHHHHHHhh-hccCccchHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 013803 292 Q-YE-NPDEEDVEALCILMSTIGE-MIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIEL 354 (436)
Q Consensus 292 ~-~~-~p~Ee~IE~Lc~LL~tiG~-~Ld~~k~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dLiDL 354 (436)
+ ++ ..=+.-|-.+|++|..+-. .+-.|- .+++-.++.-|.++.....+-.-++|-|+-|..-
T Consensus 160 eay~~g~L~~vIPFVcKvLe~~k~SkiFkPP-NPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~ 224 (249)
T 4b89_A 160 EAYKENRLEIVVPFVTKILQRASESKIFKPP-NPWTVGILKLLIELNEKANWKLSLTFEVEVLLKS 224 (249)
T ss_dssp HHHHHTCHHHHHHHHHHHHGGGTTCSSSSTT-CHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEeeHHHHHHHhcccCCccCCC-CchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHH
Confidence 0 00 1123467777888887742 222332 3789999999999988888889999999998864
No 9
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=89.51 E-value=7.6 Score=37.97 Aligned_cols=203 Identities=11% Similarity=0.157 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhhcCCCCC--CHHHHHHHHHhc-cc--cCh----HHHHHHHHHHHHHhh----cCCchhhHHHHHHHHHH
Q 013803 131 NLKWHIECRGDIGRLNAP--NFKKLFEQVKAV-NI--DNA----VTLAGVVSQIFDKAL----MEPTFCEMYANFFYFLA 197 (436)
Q Consensus 131 ~~kl~r~Vk~ILNKLTpe--nFd~i~~qL~~l-~i--~~~----e~L~~VI~lIfeKAi----~Ep~fs~mYA~LC~~L~ 197 (436)
+-..+|+|+-.+|+||.+ .+..++.+|.++ .- .+. -.|..+++.|+..|- ..|..+.-+|.++..|.
T Consensus 41 ~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~ 120 (297)
T 3pev_B 41 LSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLL 120 (297)
T ss_dssp HHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHH
Confidence 446899999999999944 667777777664 11 111 134445555555543 46888999999999998
Q ss_pred hcCCCCCCchhhhHHHHHHHHHHHHHH--HhhH--H-HHHHh-hh----hcchhhhhccHHHHHHHHHHHhhhHHHHHHH
Q 013803 198 GELPDFSEDNEKITFKRLLLNKCQEEF--ERGE--R-EQEEA-NK----ADKEGEIKQTEEEREEKRIKARRRWLGNIRL 267 (436)
Q Consensus 198 ~~lp~~~~~~~~~~FR~~LL~rcQ~eF--e~~~--~-~~~e~-~k----~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrF 267 (436)
...|++ ...|+.+....- --.. . +.++- .. .++++..+ +++ ..-+|+-|.+++
T Consensus 121 ~~~p~~---------~dillA~l~k~CP~~vp~~~~~~teegr~~mG~~~~~dg~~E-~~~-------~y~~Rm~Gi~~l 183 (297)
T 3pev_B 121 VQFPEL---------QELFMARLVKKCPFVIGFTCEIDTEKGRQNMGWKRNNENKWE-DNT-------SYDERMGGILSL 183 (297)
T ss_dssp HHSTTH---------HHHHHHHHHHHCGGGGTCCCCCSSHHHHHHTTCCBCTTSCBC-CHH-------HHHHHHHHHHHH
T ss_pred HhCccH---------HHHHHHHHhhcCCcccccCCCcccHHHHHHcCCeeCCCCCcc-cHH-------HHHHHHHHHHHH
Confidence 877653 344554433321 0000 0 00000 00 01122111 111 234689999999
Q ss_pred HHHHHhcc-----------CCcHHHHHHHHHHHhcCCCCCCh---hhHHHHHHHHHHHhhhccC---ccchHHHHHHHHH
Q 013803 268 IGELYKKK-----------MLTERIMHECIKKLLGQYENPDE---EDVEALCILMSTIGEMIDH---PKAKEHMDAYFDR 330 (436)
Q Consensus 268 IGELFk~~-----------vLs~kII~~cI~~LL~~~~~p~E---e~IE~Lc~LL~tiG~~Ld~---~k~k~~md~~f~~ 330 (436)
-+.+-... -.+..-.=..+..+|.. .|.+ -...+|..+|+.+|..|-. .+....|..+...
T Consensus 184 yAAI~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~--~p~~~t~t~~~vL~~~Le~ag~~l~~~Yg~Qf~KlL~~i~~~ 261 (297)
T 3pev_B 184 FAIITRLQLPQEFITTTSHPFPIALSWHILARICNT--PLNLITNTHFVILGSWWDAAAVQFLQAYGNQASKLLILIGEE 261 (297)
T ss_dssp HHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTS--CGGGCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTH
T ss_pred HHHHHhCcCcccccccCCCCCCchHHHHHHHHHhCC--CHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998653 12223334455556653 2332 2345888999999998864 1223334333332
Q ss_pred HHHHhhCCCC--ChHHHHHHHHHH
Q 013803 331 MEKLSNNMKL--SSRVRLMLKDSI 352 (436)
Q Consensus 331 L~~l~~~~~l--S~RIRFmI~dLi 352 (436)
+-..+...+. -.|++-++++..
T Consensus 262 ~~~~l~~~~~~~a~RL~~l~e~~~ 285 (297)
T 3pev_B 262 LTSRMAEKKYVGAARLRILLEAWQ 285 (297)
T ss_dssp HHHHTGGGCCHHHHHHHHHHHHHH
T ss_pred HhhhhcccCCccHHHHHHHHHHHH
Confidence 2222222222 256666666543
No 10
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.29 E-value=8.7 Score=40.21 Aligned_cols=170 Identities=16% Similarity=0.202 Sum_probs=106.3
Q ss_pred ccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhccc-cChHHHHHHHHHHHHHhhcCCch----hhHHHHHHHH
Q 013803 121 GKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNI-DNAVTLAGVVSQIFDKALMEPTF----CEMYANFFYF 195 (436)
Q Consensus 121 g~~~~s~~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i-~~~e~L~~VI~lIfeKAi~Ep~f----s~mYA~LC~~ 195 (436)
+.-.|+++ ...-+...++.+|-.+|.+.|..+.+=|-.+.+ .+....++++++|.++|=.+..| .....++...
T Consensus 166 ~~~~l~~E-~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C 244 (507)
T 3u0r_A 166 PDEVLTKE-VEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQC 244 (507)
T ss_dssp CTTTSCHH-HHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHH
T ss_pred chhhccHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 33345433 344577888889999999999888855555654 56777889999999998654444 4677888888
Q ss_pred HHhcCCCCCCchhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 013803 196 LAGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKK 275 (436)
Q Consensus 196 L~~~lp~~~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~ 275 (436)
+...+|-+......+.|-.++.++.--.|..... . .++ + ...+-.++.++|+--+-
T Consensus 245 ~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e-------~-~~~------~----------~~kL~LLK~lAE~s~~~ 300 (507)
T 3u0r_A 245 TRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTT-------P-VEG------L----------DIQLEVLKLLAEMSSFC 300 (507)
T ss_dssp HHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCC-------C---C------C----------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCChHHHHHHHHHhhccchhhccc-------c-ccc------h----------HHHHHHHHHHHHHccCC
Confidence 8888887765445666777665543222222110 0 000 0 02346788899998764
Q ss_pred C-Cc--HHHHHHHHHHHhcCCC-CCCh----------------hhHHHHHHHHHHHhhhc
Q 013803 276 M-LT--ERIMHECIKKLLGQYE-NPDE----------------EDVEALCILMSTIGEMI 315 (436)
Q Consensus 276 v-Ls--~kII~~cI~~LL~~~~-~p~E----------------e~IE~Lc~LL~tiG~~L 315 (436)
- +. ...+-.+...|+.... .|+| -.||||.-.|.+.|+..
T Consensus 301 ~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~ 360 (507)
T 3u0r_A 301 GDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKL 360 (507)
T ss_dssp CCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTC
T ss_pred CccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhC
Confidence 3 33 3345455555554321 2321 25899999999999875
No 11
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=41.91 E-value=1.2e+02 Score=26.61 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=43.6
Q ss_pred cccHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHh
Q 013803 124 RLSKRMRNLKWHIECRGDIGRL-NAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEP-TFCEMYANFFYFLAG 198 (436)
Q Consensus 124 ~~s~~~~~~kl~r~Vk~ILNKL-TpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep-~fs~mYA~LC~~L~~ 198 (436)
.||++ +++++++.||+.. +-..++..+..|.+++... ....+|..++..|++.. .-.++-++|...|..
T Consensus 3 ~~s~e----e~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 3 PLDER----AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp CSSHH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred CCCHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 35666 6778888877765 3456777777777766432 33346666666666533 346677777777744
No 12
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=34.96 E-value=2.2e+02 Score=24.52 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChhh----HHHHHHHHHHHhhhccCc-cchHHHHHHHHHHHHHhh
Q 013803 262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEED----VEALCILMSTIGEMIDHP-KAKEHMDAYFDRMEKLSN 336 (436)
Q Consensus 262 lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~~~p~Ee~----IE~Lc~LL~tiG~~Ld~~-k~k~~md~~f~~L~~l~~ 336 (436)
++.+.-||++.+.+-...+....+|..-|. .+++.. +..|=.+++.||+.+... ..++.|+. |..++.
T Consensus 29 w~~ileicD~I~~~~~~pk~a~ral~krl~---~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~e----L~kl~~ 101 (149)
T 3g2s_A 29 WASINGFCEQLNEDFEGPPLATRLLAHKIQ---SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNE----LIKVVS 101 (149)
T ss_dssp HHHHHHHHHHGGGSSSHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHH----HHHHHC
T ss_pred HHHHHHHHHHHHCCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH----HHHHHc
Confidence 467778899998887777776666666665 345543 344444555567766532 23445555 444443
Q ss_pred C----CCCChHHHHHHHHHHHHHHcCC
Q 013803 337 N----MKLSSRVRLMLKDSIELRKNKW 359 (436)
Q Consensus 337 ~----~~lS~RIRFmI~dLiDLR~nnW 359 (436)
. ...+..||-.|..+|.-.....
T Consensus 102 ~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 102 PKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp TTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 2467899999999999765443
No 13
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=33.85 E-value=67 Score=25.86 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCCC-----CCCHHHHHHHHHhc--cccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhc
Q 013803 133 KWHIECRGDIGRLN-----APNFKKLFEQVKAV--NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGE 199 (436)
Q Consensus 133 kl~r~Vk~ILNKLT-----penFd~i~~qL~~l--~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~ 199 (436)
....+|..+||.-. ++.+++-+..++.. ..++...|...|..||+.+.++.- -+.. |..++.+
T Consensus 8 ~~~~~~~~iI~~WDPf~~g~D~Y~~Ei~~Iv~av~~~d~~~~LA~~Iq~If~~SFee~~---p~e~-c~~iA~k 77 (90)
T 1u84_A 8 QLNRLLLEWIGAWDPFGLGKDAYDVEAASVLQAVYETEDARTLAARIQSIYEFAFDEPI---PFPH-CLKLARR 77 (90)
T ss_dssp HHHHHHHHHHHHHCTTSSCGGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSSCC---CHHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcCCCccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc---ChHH-HHHHHHH
Confidence 35677777888655 57888888888773 456899999999999999996653 2334 6666543
No 14
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=30.84 E-value=2.2e+02 Score=24.97 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChh----hHHHHHHHHHHHhhhccCc-cchHHHHHHHHHHHHHhh
Q 013803 262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEE----DVEALCILMSTIGEMIDHP-KAKEHMDAYFDRMEKLSN 336 (436)
Q Consensus 262 lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~~~p~Ee----~IE~Lc~LL~tiG~~Ld~~-k~k~~md~~f~~L~~l~~ 336 (436)
++.+.-||++.+.+-...+....+|.+-|. .++.. .+..|=.+++.||+.+... ..+..|+. |..++.
T Consensus 31 w~~ileicD~I~~~~~~~k~A~ral~krl~---~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~e----L~kl~~ 103 (171)
T 1juq_A 31 WEYIIGFCDQINKELEGPQIAVRLLAHKIQ---SPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNE----LIKVVS 103 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH----HHHHHC
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH----HHHHhc
Confidence 356678888888887677666666666665 34543 3444455556667776532 23445555 444443
Q ss_pred C----CCCChHHHHHHHHHHHHHHcCC
Q 013803 337 N----MKLSSRVRLMLKDSIELRKNKW 359 (436)
Q Consensus 337 ~----~~lS~RIRFmI~dLiDLR~nnW 359 (436)
. ...+..||-.|..+|.-.....
T Consensus 104 ~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 104 PKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2 3467999999999999765443
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=28.57 E-value=2.2e+02 Score=24.41 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChhhHHHHH----HHHHHHhhhccCcc-chHHHHHHHHHHHHHhhC
Q 013803 263 GNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALC----ILMSTIGEMIDHPK-AKEHMDAYFDRMEKLSNN 337 (436)
Q Consensus 263 G~IrFIGELFk~~vLs~kII~~cI~~LL~~~~~p~Ee~IE~Lc----~LL~tiG~~Ld~~k-~k~~md~~f~~L~~l~~~ 337 (436)
+.+.-||++.+.+-...+-...+|..-|+ .+++...-..+ .+++.||..+...- .+.. ++.|..++..
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~---~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~F----l~eL~kl~~~ 92 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQ---SPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRF----LNELIKVLSP 92 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHH----HHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHH----HHHHHHHHcc
Confidence 56667888888776556555555655554 35554444444 44555576664321 2334 4445555543
Q ss_pred ----CCCChHHHHHHHHHHHHHHcCC
Q 013803 338 ----MKLSSRVRLMLKDSIELRKNKW 359 (436)
Q Consensus 338 ----~~lS~RIRFmI~dLiDLR~nnW 359 (436)
...+..|+-.|..+|.......
T Consensus 93 k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 93 KYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp STTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2457899999999999765433
No 16
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.55 E-value=2.1e+02 Score=27.68 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHh
Q 013803 124 RLSKRMRNLKWHIECRGDIGRL-NAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALME-PTFCEMYANFFYFLAG 198 (436)
Q Consensus 124 ~~s~~~~~~kl~r~Vk~ILNKL-TpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~E-p~fs~mYA~LC~~L~~ 198 (436)
.++.+ +++++++.+|... +-...+..+.-+.+++... ....+|..++..+++. +....+-++|...|..
T Consensus 4 ~~s~e----e~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~--~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~ 74 (339)
T 1ug3_A 4 ALSEE----ELEKKSKAIIEEYLHLNDMKEAVQCVQELASPS--LLFIFVRHGVESTLERSAIAREHMGQLLHQLLC 74 (339)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGG--GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHH----HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcc--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 35555 6778888877763 3456677777777665432 4555677777777763 4456777777777764
No 17
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.17 E-value=3.9e+02 Score=22.87 Aligned_cols=64 Identities=9% Similarity=-0.028 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcCC-CCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcC--CchhhHHHHHHHHHHh
Q 013803 133 KWHIECRGDIGRL-NAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALME--PTFCEMYANFFYFLAG 198 (436)
Q Consensus 133 kl~r~Vk~ILNKL-TpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~E--p~fs~mYA~LC~~L~~ 198 (436)
+++++++.+|..- +-...+..+.-|.+++.. .....+|..++..|++. +.-..+-+.|...|..
T Consensus 7 el~kki~~lL~EY~~~~D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~ 73 (152)
T 2ion_A 7 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 73 (152)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 4667777766654 234566666666666543 33445566666666653 3445566666666653
No 18
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=20.34 E-value=4.1e+02 Score=22.77 Aligned_cols=90 Identities=9% Similarity=0.036 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChh----hHHHHHHHHHHHhhhccCc-cchHHHHHHHHHHHHHh-h
Q 013803 263 GNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEE----DVEALCILMSTIGEMIDHP-KAKEHMDAYFDRMEKLS-N 336 (436)
Q Consensus 263 G~IrFIGELFk~~vLs~kII~~cI~~LL~~~~~p~Ee----~IE~Lc~LL~tiG~~Ld~~-k~k~~md~~f~~L~~l~-~ 336 (436)
+.+.=||++.+.+-...+....+|.+-|+. +++.. .+..|=.+++.||+.+... ..++.|+.+ |..+. .
T Consensus 35 ~~~leicD~I~~~~~~~k~a~ral~krl~~--~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~---Lvk~~~~ 109 (157)
T 1elk_A 35 ALNMEICDIINETEEGPKDALRAVKKRIVG--NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV---LVRTILP 109 (157)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH---THHHHST
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH---HHHHhcc
Confidence 455567888887766777666677776652 23443 4444555556667776532 234556663 22222 2
Q ss_pred CCCCChHHHHHHHHHHHHHHc
Q 013803 337 NMKLSSRVRLMLKDSIELRKN 357 (436)
Q Consensus 337 ~~~lS~RIRFmI~dLiDLR~n 357 (436)
....+..||-.|..+|.....
T Consensus 110 k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 110 KNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp TTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHH
Confidence 233467899999999986543
Done!