BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013804
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 572 bits (1475), Expect = e-163, Method: Compositional matrix adjust.
Identities = 286/336 (85%), Positives = 302/336 (89%)
Query: 101 SAFVVTPQRKLQTDELATVRLFQENTPSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWD 160
+AFVV+ +KLQTDELATVRLFQENTPSVV ITNLA RQDAFTLDVLEVPQGSGSGFVWD
Sbjct: 2 AAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWD 61
Query: 161 SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGV 220
+GH+VTNYHVIRGASD+RVT ADQ+ +DAK+VGFDQDKDVAVLRIDAPK+KLRPIP+GV
Sbjct: 62 KQGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGV 121
Query: 221 SADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXX 280
SADLLVGQKV+AIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAIN
Sbjct: 122 SADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSG 181
Query: 281 XXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAP 340
TAIYSPSGASSGVGFSIPVDTV GIVDQLV+FGKVTRPILGIKFAP
Sbjct: 182 GPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKFAP 241
Query: 341 DQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLY 400
DQSVEQLGVSGVLVLDAPP+GPAGKAGL STKRD YGRL+LGDIITSVNG KVSNGSDLY
Sbjct: 242 DQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLY 301
Query: 401 RILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDET 436
RILDQCKVGDEV VEVLRGD KEKI V LEPKPDE+
Sbjct: 302 RILDQCKVGDEVTVEVLRGDHKEKISVTLEPKPDES 337
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 151/285 (52%), Gaps = 25/285 (8%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK+VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I + S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRP 332
AIN TAI +P G + G+GF+IP + V + Q+V++G+V R
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRG 263
Query: 333 ILGI-------KFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDII 385
LGI + A V+ G V PN A KAG+ + GD+I
Sbjct: 264 ELGIMGTELNSELAKAMKVD--AQRGAFVSQVLPNSSAAKAGIKA-----------GDVI 310
Query: 386 TSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
TS+NGK +S+ + L + VG ++ + +LR ++ + ++L+
Sbjct: 311 TSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 151/285 (52%), Gaps = 25/285 (8%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK+VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I + S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRP 332
AIN TAI +P G + G+GF+IP + V + Q+V++G+V R
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRG 263
Query: 333 ILGI-------KFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDII 385
LGI + A V+ G V PN A KAG+ + GD+I
Sbjct: 264 ELGIMGTELNSELAKAMKVD--AQRGAFVSQVLPNSSAAKAGIKA-----------GDVI 310
Query: 386 TSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
TS+NGK +S+ + L + VG ++ + +LR ++ + ++L+
Sbjct: 311 TSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 151/285 (52%), Gaps = 25/285 (8%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK+VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I + S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRP 332
AIN TAI +P G + G+GF+IP + V + Q+V++G+V R
Sbjct: 204 AINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRG 263
Query: 333 ILGI-------KFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDII 385
LGI + A V+ G V PN A KAG+ + GD+I
Sbjct: 264 ELGIMGTELNSELAKAMKVD--AQRGAFVSQVLPNSSAAKAGIKA-----------GDVI 310
Query: 386 TSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
TS+NGK +S+ + L + VG ++ + +LR ++ + ++L+
Sbjct: 311 TSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 151/285 (52%), Gaps = 25/285 (8%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK+VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I + S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRP 332
AIN TAI +P G + G+GF+IP + V + Q+V++G+V R
Sbjct: 204 AINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRG 263
Query: 333 ILGI-------KFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDII 385
LGI + A V+ G V PN A KAG+ + GD+I
Sbjct: 264 ELGIMGTELNSELAKAMKVD--AQRGAFVSQVLPNSSAAKAGIKA-----------GDVI 310
Query: 386 TSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
TS+NGK +S+ + L + VG ++ + +LR ++ + ++L+
Sbjct: 311 TSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 151/285 (52%), Gaps = 25/285 (8%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK+VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I + S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRP 332
AIN TAI +P G + G+GF+IP + V + Q+V++G+V R
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRG 263
Query: 333 ILGI-------KFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDII 385
LGI + A V+ G V PN A KAG+ + GD+I
Sbjct: 264 ELGIMGTELNSELAKAMKVD--AQRGAFVSQVLPNSSAAKAGIKA-----------GDVI 310
Query: 386 TSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
TS+NGK +S+ + L + VG ++ + +LR ++ + ++L+
Sbjct: 311 TSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 148/285 (51%), Gaps = 25/285 (8%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRP 332
AIN TAI +P G + G+GF+IP + V + Q V++G+V R
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG 263
Query: 333 ILGI-------KFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDII 385
LGI + A V+ G V PN A KAG+ + GD+I
Sbjct: 264 ELGIXGTELNSELAKAXKVD--AQRGAFVSQVLPNSSAAKAGIKA-----------GDVI 310
Query: 386 TSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
TS+NGK +S+ + L + VG ++ + +LR ++ + ++L+
Sbjct: 311 TSLNGKPISSFAALRAQVGTXPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 148/285 (51%), Gaps = 25/285 (8%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRP 332
AIN TAI +P G + G+GF+IP + V + Q V++G+V R
Sbjct: 204 AINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG 263
Query: 333 ILGI-------KFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDII 385
LGI + A V+ G V PN A KAG+ + GD+I
Sbjct: 264 ELGIXGTELNSELAKAXKVD--AQRGAFVSQVLPNSSAAKAGIKA-----------GDVI 310
Query: 386 TSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
TS+NGK +S+ + L + VG ++ + +LR ++ + ++L+
Sbjct: 311 TSLNGKPISSFAALRAQVGTXPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 148/285 (51%), Gaps = 25/285 (8%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRP 332
AIN TAI +P G + G+GF+IP + V + Q V++G+V R
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG 263
Query: 333 ILGI-------KFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDII 385
LGI + A V+ G V PN A KAG+ + GD+I
Sbjct: 264 ELGIXGTELNSELAKAXKVD--AQRGAFVSQVLPNSSAAKAGIKA-----------GDVI 310
Query: 386 TSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
TS+NGK +S+ + L + VG ++ + +LR ++ + ++L+
Sbjct: 311 TSLNGKPISSFAALRAQVGTXPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 150/287 (52%), Gaps = 23/287 (8%)
Query: 151 QGSGSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAP 209
+G GSG + + SKG+V+TN HVI A I + D +DAK++G D D+A+L+I P
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNP 121
Query: 210 KDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 269
KL I I S L VG A+GNPFGL T T+G++S L R S +++ IQ
Sbjct: 122 S-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR---SGLNLEGLENFIQ 177
Query: 270 TDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKV 329
TDA+IN TAI +P G S G+GF+IP + + QL+ FG++
Sbjct: 178 TDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEI 237
Query: 330 TRPILGIKFAPDQSVE-----QLGVS-GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGD 383
R +LGIK + S + L V G V + P + KAG+ + GD
Sbjct: 238 KRGLLGIK-GTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKA-----------GD 285
Query: 384 IITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
IITS+NGK +++ ++L + + G +V + +LR + ++ V L+
Sbjct: 286 IITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLD 332
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 150/287 (52%), Gaps = 23/287 (8%)
Query: 151 QGSGSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAP 209
+G GSG + + SKG+V+TN HVI A I + D +DAK++G D D+A+L+I P
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNP 121
Query: 210 KDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 269
KL I I S L VG A+GNPFGL T T+G++S L R S +++ IQ
Sbjct: 122 S-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR---SGLNLEGLENFIQ 177
Query: 270 TDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKV 329
TDA+IN TAI +P G S G+GF+IP + + QL+ FG++
Sbjct: 178 TDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEI 237
Query: 330 TRPILGIKFAPDQSVE-----QLGVS-GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGD 383
R +LGIK + S + L V G V + P + KAG+ + GD
Sbjct: 238 KRGLLGIK-GTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKA-----------GD 285
Query: 384 IITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
IITS+NGK +++ ++L + + G +V + +LR + ++ V L+
Sbjct: 286 IITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLD 332
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 146/281 (51%), Gaps = 30/281 (10%)
Query: 154 GSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D + G ++TN HVIR AS I VT D A+++G D + D+AVL+IDA
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA--KN 136
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLD-----HTLTTGVISGLRREISSAATGRPIQDV 267
L+ + IG S L VG V AIGNPFGL+ + T G++S L+R S +++
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR---SDLNIEGVENF 193
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFG 327
IQTDAAIN TAI SP G + G+GF+IP++ V + Q++KFG
Sbjct: 194 IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFG 253
Query: 328 KVTRPILGI---KFAPDQSVEQLGV----SGVLVLDAPPNGPAGKAGLLSTKRDAYGRLI 380
+ R ++GI P+ + + +G G LV PN PA AGL +
Sbjct: 254 SIHRGLMGIFVQHLTPELA-QAMGYPEDFQGALVSQVNPNSPAELAGLKA---------- 302
Query: 381 LGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQ 421
GDIIT +N K++ + + + +VG V + V R ++
Sbjct: 303 -GDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNK 342
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 146/281 (51%), Gaps = 30/281 (10%)
Query: 154 GSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D + G ++TN HVIR AS I VT D A+++G D + D+AVL+IDA
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA--KN 136
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLD-----HTLTTGVISGLRREISSAATGRPIQDV 267
L+ + IG S L VG V AIGNPFGL+ + T G++S L+R S +++
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR---SDLNIEGVENF 193
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFG 327
IQTDAAIN TAI SP G + G+GF+IP++ V + Q++KFG
Sbjct: 194 IQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFG 253
Query: 328 KVTRPILGI---KFAPDQSVEQLGV----SGVLVLDAPPNGPAGKAGLLSTKRDAYGRLI 380
+ R ++GI P+ + + +G G LV PN PA AGL +
Sbjct: 254 SIHRGLMGIFVQHLTPELA-QAMGYPEDFQGALVSQVNPNSPAELAGLKA---------- 302
Query: 381 LGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQ 421
GDIIT +N K++ + + + +VG V + V R ++
Sbjct: 303 -GDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNK 342
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 146/281 (51%), Gaps = 30/281 (10%)
Query: 154 GSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D + G ++TN HVIR AS I VT D A+++G D + D+AVL+IDA
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA--KN 136
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLD-----HTLTTGVISGLRREISSAATGRPIQDV 267
L+ + IG S L VG V AIGNPFGL+ + T G++S L+R S +++
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR---SDLNIEGVENF 193
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFG 327
IQTDAAIN TAI SP G + G+GF+IP++ V + Q++KFG
Sbjct: 194 IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFG 253
Query: 328 KVTRPILGI---KFAPDQSVEQLG----VSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLI 380
+ R ++GI P+ + + +G G LV PN PA AGL +
Sbjct: 254 SIHRGLMGIFVQHLTPELA-QAMGYPEDFQGALVSQVNPNSPAELAGLKA---------- 302
Query: 381 LGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQ 421
GDIIT +N K++ + + + +VG V + V R ++
Sbjct: 303 -GDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNK 342
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 145/281 (51%), Gaps = 30/281 (10%)
Query: 154 GSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D + G ++TN HVIR AS I VT D A+++G D + D+AVL+IDA
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA--KN 136
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLD-----HTLTTGVISGLRREISSAATGRPIQDV 267
L+ + IG S L VG V AIGNPFGL+ + T G++S L+R S +++
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR---SDLNIEGVENF 193
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFG 327
IQTDAAI TAI SP G + G+GF+IP++ V + Q++KFG
Sbjct: 194 IQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFG 253
Query: 328 KVTRPILGI---KFAPDQSVEQLGV----SGVLVLDAPPNGPAGKAGLLSTKRDAYGRLI 380
+ R ++GI P+ + + +G G LV PN PA AGL +
Sbjct: 254 SIHRGLMGIFVQHLTPELA-QAMGYPEDFQGALVSQVNPNSPAELAGLKA---------- 302
Query: 381 LGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQ 421
GDIIT +N K++ + + + +VG V + V R ++
Sbjct: 303 -GDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNK 342
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 1/183 (0%)
Query: 154 GSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKL 213
GSGF++D +G+++TNYHV+ GA +I VT D S YDA+ +G D++ D+AV++I A K
Sbjct: 58 GSGFIFDPEGYILTNYHVVGGADNITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKF 117
Query: 214 RPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAA 273
+ G S + +G+ AIGNP G HT+T GV+S R I +IQTDAA
Sbjct: 118 PYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQTDAA 177
Query: 274 INXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPI 333
IN TAI +P A + +GF+IP++TV +D ++ KV +
Sbjct: 178 INPGNSGGPLLNIHGEVIGINTAIVNPQEAVN-LGFAIPINTVKKFLDTILTQKKVEKAY 236
Query: 334 LGI 336
LG+
Sbjct: 237 LGV 239
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 166/339 (48%), Gaps = 31/339 (9%)
Query: 106 TPQRKLQTDELATVRL-FQENTPSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGH 164
TPQ + A+ L + P+VVN+ N ++ + LE+ + GSG + D +G+
Sbjct: 19 TPQFDSTDETPASYNLAVRRAAPAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGY 75
Query: 165 VVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADL 224
++TN HVI A I V D ++A +VG D D+AVL+I+A L IPI
Sbjct: 76 IITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVP 134
Query: 225 LVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXX 284
+G V AIGNP+ L T+T G+IS R I TGR Q+ +QTDA+IN
Sbjct: 135 HIGDVVLAIGNPYNLGQTITQGIISATGR-IGLNPTGR--QNFLQTDASINPGNXGGALV 191
Query: 285 XXXXXXXXXXTAIYSPSG---ASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGI---KF 338
T + S G+GF+IP I+D+L++ G+V R +GI +
Sbjct: 192 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREI 251
Query: 339 APDQS----VEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVS 394
AP + ++QL G++V + P+GPA AG+ + D+I SV+ K
Sbjct: 252 APLHAQGGGIDQL--QGIVVNEVSPDGPAANAGIQ-----------VNDLIISVDNKPAI 298
Query: 395 NGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKP 433
+ + + + + G + V V+R D++ + V ++ P
Sbjct: 299 SALETMAQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYP 337
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 157/317 (49%), Gaps = 30/317 (9%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 15 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 71
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 72 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 130
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 131 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 187
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGI---KFAPDQS----VEQLGVSGVLVLD 356
G+GF+IP I+D+L++ G+V R +GI + AP + ++QL G++V +
Sbjct: 188 PEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQL--QGIVVNE 245
Query: 357 APPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEV 416
P+GPA AG+ + D+I SV+ K + + + + + G + V V
Sbjct: 246 VSPDGPAANAGIQ-----------VNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVV 294
Query: 417 LRGDQKEKIPVKLEPKP 433
+R D++ + V ++ P
Sbjct: 295 MRDDKQLTLQVTIQEYP 311
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
Query: 151 QGSGSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAP 209
+G GSG + + SKG+V+TN HVI A I + D +DAK++G D D+A+L+I P
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNP 121
Query: 210 KDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 269
KL I I S L VG A+GNPFGL T T+G++S L R S +++ IQ
Sbjct: 122 S-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR---SGLNLEGLENFIQ 177
Query: 270 TDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKV 329
TDA+IN TAI +P G S G+GF+IP + + QL+ FG++
Sbjct: 178 TDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEI 237
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 30/317 (9%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 20 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 76
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL I A L IPI +G V AIGNP+ L T+T G
Sbjct: 77 VFEALLVGSDSLTDLAVLIIKA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 135
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 136 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 192
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGI---KFAPDQS----VEQLGVSGVLVLD 356
G+GF+IP I+D+L++ G+V R +GI + AP + ++QL G++V +
Sbjct: 193 PEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQL--QGIVVNE 250
Query: 357 APPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEV 416
P+GPA AG+ + D+I SV+ K + + + + + G + V V
Sbjct: 251 VSPDGPAANAGIQ-----------VNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVV 299
Query: 417 LRGDQKEKIPVKLEPKP 433
+R D++ + V ++ P
Sbjct: 300 MRDDKQLTLQVTIQEYP 316
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 156/317 (49%), Gaps = 30/317 (9%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 15 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIXDQRGYIITNKHVINDADQIIVALQDGR 71
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 72 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 130
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 131 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGET 187
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGI---KFAPDQS----VEQLGVSGVLVLD 356
G+GF+IP I D+L++ G+V R +GI + AP + ++QL G++V +
Sbjct: 188 PEGIGFAIPFQLATKIXDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQL--QGIVVNE 245
Query: 357 APPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEV 416
P+GPA AG+ + D+I SV+ K + + + + + G + V V
Sbjct: 246 VSPDGPAANAGIQ-----------VNDLIISVDNKPAISALETXDQVAEIRPGSVIPVVV 294
Query: 417 LRGDQKEKIPVKLEPKP 433
R D++ + V ++ P
Sbjct: 295 XRDDKQLTLQVTIQEYP 311
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 154 GSGFVWDSKGHVVTNYHVIRGASD---------IRVTFADQSAYDAKIVGFDQDKDVAVL 204
GSG + ++G ++TN HVI A+ VTF+D +VG D D+AV+
Sbjct: 33 GSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFTVVGADPTSDIAVV 92
Query: 205 RIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISS---AATG 261
R+ L PI +G S+DL VGQ V AIG+P GL+ T+TTG++S L R +S+ A
Sbjct: 93 RVQG-VSGLTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQ 151
Query: 262 RPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYS-------PSGASSGVGFSIPVD 314
+ D IQTDAAIN +AI + S G+GF+IPVD
Sbjct: 152 NTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVD 211
Query: 315 TVNGIVDQLVKFGKVTRPILGIKFAPDQ 342
I D+L+ GK + LG++ D+
Sbjct: 212 QAKRIADELISTGKASHASLGVQVTNDK 239
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 31 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 87
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 88 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 146
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 147 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 203
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 204 PEGIGFAIPFQLATKIMDKLIRDGRVIR 231
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 43 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 99
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 100 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 158
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 159 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 215
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 216 PEGIGFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 43 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 99
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 100 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 158
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 159 IISATGR-IGLNPTGR--QNFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGET 215
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 216 PEGIGFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 214 PEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 214 PEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 43 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIXDQRGYIITNKHVINDADQIIVALQDGR 99
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 100 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 158
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 159 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGET 215
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I D+L++ G+V R
Sbjct: 216 PEGIGFAIPFQLATKIXDKLIRDGRVIR 243
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L +T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQVITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 214 PEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 43 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 99
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 100 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 158
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS I TGR Q+ +QTDA+IN T + S
Sbjct: 159 IISA-TGAIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 215
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 216 PEGIGFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPANLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 214 PEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 43 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 99
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 100 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 158
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ + TDA+IN T + S
Sbjct: 159 IISATGR-IGLNPTGR--QNFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 215
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 216 PEGIGFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPANLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 214 PEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISAT-GAIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 214 PEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ + TDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFGKVTR 331
G+GF+IP I+D+L++ G+V R
Sbjct: 214 PEGIGFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 39/304 (12%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP SGSGF+ G +VTN HV+ ++V + + Y+AKI D+ D+A+++ID
Sbjct: 42 EVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKID 101
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
+ KL + +G S++L G+ V AIG+PF L +T+TTG++S +R D
Sbjct: 102 H-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDY 160
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIV----DQL 323
IQTDA IN T ++G+ F+IP D + + D+
Sbjct: 161 IQTDAIINYGNSGGPLVNLDGEVIGINTL-----KVTAGISFAIPSDKIKKFLTESHDRQ 215
Query: 324 VKFGKVT-RPILGIKFAP--DQSVEQLG---------VSGVLVLDAPPNGPAGKAGLLST 371
K +T + +GI+ ++L +SG +++ P+ PA GL
Sbjct: 216 AKGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKEN 275
Query: 372 KRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQK---EKIPVK 428
D+I S+NG+ V + +D+ ++ + + V V RG++ IP +
Sbjct: 276 -----------DVIISINGQSVVSANDVSDVIKRESTLNMV---VRRGNEDIMITVIPEE 321
Query: 429 LEPK 432
++P+
Sbjct: 322 IDPR 325
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 130/274 (47%), Gaps = 33/274 (12%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP SGSGF+ G +VTN HV+ ++V + + Y+AKI D+ D+A+++ID
Sbjct: 42 EVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKID 101
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
+ KL + +G S++L G+ V AIG+PF L +T+TTG++S +R D
Sbjct: 102 H-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDY 160
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIV----DQL 323
IQTDA IN T ++G+ F+IP D + + D+
Sbjct: 161 IQTDAIINYGNAGGPLVNLDGEVIGINTL-----KVTAGISFAIPSDKIKKFLTESHDRQ 215
Query: 324 VKFGKVT-RPILGIKFAPDQS--VEQLG---------VSGVLVLDAPPNGPAGKAGLLST 371
K +T + +GI+ S ++L +SG +++ P+ PA GL
Sbjct: 216 AKGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKEN 275
Query: 372 KRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQ 405
D+I S+NG+ V + +D+ ++ +
Sbjct: 276 -----------DVIISINGQSVVSANDVSDVIKR 298
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 103/204 (50%), Gaps = 10/204 (4%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 15 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 71
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 72 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 130
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 131 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 187
Query: 304 SSGVGFSIPVDTVNGIVDQLVKFG 327
G+GF+IP I+D+L++ G
Sbjct: 188 PEGIGFAIPFQLATKIMDKLIRDG 211
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP SGSGF+ G +VTN HV+ ++V + + Y+AKI D+ D+A+++ID
Sbjct: 59 EVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKID 118
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
+ KL + +G S++L G+ V AIG+PF L +T+TTG++S +R D
Sbjct: 119 H-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDY 177
Query: 268 IQTDAAIN 275
IQTDA IN
Sbjct: 178 IQTDAIIN 185
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP SGSGF+ G +VTN HV+ ++V + + Y+AKI D+ D+A+++ID
Sbjct: 42 EVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKID 101
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
+ KL + +G S++L G+ V AIG+PF L +T+TTG++S +R D
Sbjct: 102 H-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDY 160
Query: 268 IQTDAAIN 275
IQTDA IN
Sbjct: 161 IQTDAIIN 168
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP SGSGF+ G +VTN HV+ ++V + + Y+AKI D+ D+A+++ID
Sbjct: 59 EVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKID 118
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
+ KL + +G S++L G+ V AIG+PF L +T+TTG++S +R D
Sbjct: 119 H-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDY 177
Query: 268 IQTDAAIN 275
IQTDA IN
Sbjct: 178 IQTDAIIN 185
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 137/305 (44%), Gaps = 39/305 (12%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP +GSGFV + G +VTN HV+ +RV Y+A + D D+A LRI
Sbjct: 43 EVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRIQ 102
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
K+ L +P+G SAD+ G+ V A+G+PF L +T+T+G++S +R + +
Sbjct: 103 T-KEPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEY 161
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVK-- 325
IQTDAAI+ T ++G+ F+IP D + + + K
Sbjct: 162 IQTDAAIDFGNAGGPLVNLDGEVIGVNTM-----KVTAGISFAIPSDRLREFLHRGEKKN 216
Query: 326 -----FGKVTRPI--LGIKFAPDQSVE-QLG-------VSGVLVLDAPPNGPAGKAGLLS 370
G R I + + +P E QL GVL+ PA +AGL
Sbjct: 217 SSSGISGSQRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRP 276
Query: 371 TKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 430
GD+I ++ + V N D+Y + + ++ V++ RG +E + + +
Sbjct: 277 -----------GDVILAIGEQMVQNAEDVY---EAVRTQSQLAVQIRRG--RETLTLYVT 320
Query: 431 PKPDE 435
P+ E
Sbjct: 321 PEVTE 325
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 306 GVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPPNGPAGK 365
G+GF+IP + I++QL K GKVTRP LGI+ ++ + S + L+ P N +G
Sbjct: 3 GLGFAIPANDAINIIEQLEKNGKVTRPALGIQMV---NLSNVSTSDIRRLNIPSNVTSGV 59
Query: 366 -AGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEK 424
+ + A G L D+IT V+ K++++ +DL L +GD + + R ++E
Sbjct: 60 IVRSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEET 119
Query: 425 IPVKL 429
+KL
Sbjct: 120 TSIKL 124
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 122/299 (40%), Gaps = 35/299 (11%)
Query: 153 SGSGFVWDSKGHVVTNYHVIRGASDIRVTF-ADQSAYDAKIVGFDQDKDVAVLRIDAPKD 211
+GS F+ G ++TN H + + ++V D Y AK++ D D+A+L +++
Sbjct: 75 TGSAFMI-GDGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSVESEDF 133
Query: 212 KLRPIPIGVSADLLVGQKVYAIGNPFGLDH-TLTTGVISGLRREISSAATGRPIQDVIQT 270
P+ + + V +G P G D ++T GV+S R E++S A G IQ
Sbjct: 134 WKGAEPLRLGHLPRLQDSVTVVGYPLGGDTISVTKGVVS--RIEVTSYAHGSSDLLGIQI 191
Query: 271 DAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVT 330
DAAIN +Y S + +G+ IP V+ + + GK T
Sbjct: 192 DAAINPGNSGGPAFNDQGECIGVAFQVYR-SEETENIGYVIPTTVVSHFLTDYERNGKYT 250
Query: 331 -RPILGI---KFAPDQSVEQLGV---SGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGD 383
P LG+ K E L V GVLV P A K L GD
Sbjct: 251 GYPCLGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASKV------------LKEGD 298
Query: 384 IITSVNGKKV-SNGSDLYR---------ILDQCKVGDEVIVEVLRGDQKEKIPVKLEPK 432
+I S + V G+ +R ++ Q GD + ++R + +K+ V L P+
Sbjct: 299 VIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVLRPR 357
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
PSVV I +LA R VLE G+GFV S V+TN HV+ G++++ V +A
Sbjct: 42 PSVVKIRSLAPR----CQKVLE-----GTGFVI-SPDRVMTNAHVVAGSNNVTV-YAGDK 90
Query: 187 AYDAKIVGFDQDKDVAVL 204
++A +V +D DVA+L
Sbjct: 91 PFEATVVSYDPSVDVAIL 108
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
PSVV I +LA R VLE G+GFV S V+TN HV+ G++++ V +A
Sbjct: 24 PSVVKIRSLAPR----CQKVLE-----GTGFVI-SPDRVMTNAHVVAGSNNVTV-YAGDK 72
Query: 187 AYDAKIVGFDQDKDVAVL 204
++A +V +D DVA+L
Sbjct: 73 PFEATVVSYDPSVDVAIL 90
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
PSVV I +LA R VLE G+GFV S V+TN HV+ G++++ V +A
Sbjct: 22 PSVVKIRSLAPR----CQKVLE-----GTGFVI-SPDRVMTNAHVVAGSNNVTV-YAGDK 70
Query: 187 AYDAKIVGFDQDKDVAVL 204
++A +V +D DVA+L
Sbjct: 71 PFEATVVSYDPSVDVAIL 88
>pdb|2KJP|A Chain A, Solution Structure Of Protein Ylbl (Bsu15050) From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr713a
Length = 91
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 375 AYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPD 434
A G++ +GD I S +GK + L + K GD+V +++ R ++++++ + L+ PD
Sbjct: 14 AKGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPD 73
Query: 435 E 435
E
Sbjct: 74 E 74
>pdb|2KL1|A Chain A, Solution Structure Of Gtr34c From Geobacillus
Thermodenitrificans. Northeast Structural Genomics
Consortium Target Gtr34c
Length = 94
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 351 GVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGD 410
GV V+ PN PA GRL GD I +++G+ ++ + + + + GD
Sbjct: 6 GVYVMSVLPNMPAA------------GRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGD 53
Query: 411 EVIVEVLRGDQKEKIPVKLEPKP 433
V V +R ++ + + L+P P
Sbjct: 54 RVRVTFIRDRKQHEAELVLKPFP 76
>pdb|3I1E|A Chain A, Crystal Structure Of The Pdz Domain Of The Sdrc-Like
Protein (Lin2157) From Listeria Innocua, Northeast
Structural Genomics Consortium Target Lkr136c
pdb|3I1E|B Chain B, Crystal Structure Of The Pdz Domain Of The Sdrc-Like
Protein (Lin2157) From Listeria Innocua, Northeast
Structural Genomics Consortium Target Lkr136c
Length = 90
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 368 LLSTKRD--AYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKI 425
+LS K D A G L GD+IT ++G+ + + + KVGD V ++ G++ E+
Sbjct: 6 VLSVKEDVPAAGILHAGDLITEIDGQSFKSSQEFIDYIHSKKVGDTVKIKYKHGNKNEEA 65
Query: 426 PVKL 429
+KL
Sbjct: 66 SIKL 69
>pdb|2KJK|A Chain A, Solution Structure Of The Second Domain Of The Listeria
Protein Lin2157, Northeast Structural Genomics
Consortium Target Lkr136b
Length = 100
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 368 LLSTKRD--AYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKI 425
+LS K D A G L GD+IT ++G+ + + + KVGD V ++ G++ E+
Sbjct: 11 VLSVKEDVPAAGILHAGDLITEIDGQSFKSSQEFIDYIHSKKVGDTVKIKYKHGNKNEEA 70
Query: 426 PVKL 429
+KL
Sbjct: 71 SIKL 74
>pdb|3I18|A Chain A, Crystal Structure Of The Pdz Domain Of The Sdrc-Like
Protein (Lmo2051) From Listeria Monocytogenes, Northeast
Structural Genomics Consortium Target Lmr166b
Length = 100
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 379 LILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKL 429
L GD+IT ++G + + + KVGD V + GD+ E+ +KL
Sbjct: 24 LHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKL 74
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 200 DVAVLRIDAPK------DKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLT 244
D+A++R+ + DK+ P IG S DL G K+ IG PF DH +
Sbjct: 120 DLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF--DHKVN 168
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 200 DVAVLRIDAPK------DKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLT 244
D+A++R+ + DK+ P IG S DL G K+ IG PF DH +
Sbjct: 120 DLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF--DHKVN 168
>pdb|2W5E|A Chain A, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|B Chain B, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|C Chain C, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|D Chain D, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|E Chain E, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|F Chain F, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
Length = 163
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 144 LDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAV 203
L V++ P+G G+GF S +VT HV+ + + V + + Y+AK V + +KD+A
Sbjct: 13 LCVIDTPEGKGTGFF--SGNDIVTAAHVVGNNTFVNVCY-EGLMYEAK-VRYMPEKDIAF 68
Query: 204 LRIDAPKDKLRP 215
I P D L P
Sbjct: 69 --ITCPGD-LHP 77
>pdb|1Q25|A Chain A, Crystal Structure Of N-terminal 3 Domains Of Ci-mpr
pdb|1SYO|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SYO|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SZ0|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SZ0|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
Length = 432
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 199 KDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNP 236
+D+ VLR +P+ +R P G +A L+ G + + +G P
Sbjct: 175 RDIEVLRASSPQ--VRVCPTGAAACLVRGDRAFDVGRP 210
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 379 LILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEV 416
L +GD I SVNG+ +S+ + + K G EV++EV
Sbjct: 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 16/72 (22%)
Query: 350 SGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYR-ILDQCKV 408
SG+ V + PN P+ + G+ GDII VNG+ + + S+L +L +
Sbjct: 35 SGIYVQEVAPNSPSQRGGIQD-----------GDIIVKVNGRPLVDSSELQEAVLTESP- 82
Query: 409 GDEVIVEVLRGD 420
+++EV RG+
Sbjct: 83 ---LLLEVRRGN 91
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 352 VLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDE 411
V+VL P GPA KAG + GD+I +V+G V G LY + D + +
Sbjct: 101 VVVLTPAPGGPAEKAGARA-----------GDVIVTVDGTAV-KGXSLYDVSDLLQGEAD 148
Query: 412 VIVEVL 417
VEV+
Sbjct: 149 SQVEVV 154
>pdb|2Q5T|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae
pdb|3Q9O|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae In Complex
With Nad
Length = 642
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 85 SVVLSFTLLFSNVDSASAFVVTPQRKLQTDELATVRLFQENTPSVVNITNLAARQ 139
S+ ++ +LFS++DS + Q + L+ +R EN P +V ARQ
Sbjct: 317 SLFVATRILFSHLDSVFTLNLDEQEPEVAERLSDLRRINENNPGMVTQVLTVARQ 371
>pdb|3KVJ|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 105 At 1.94a
Resolution
pdb|3KVK|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 641 At 2.05a
Resolution
pdb|3KVL|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 715 At 1.85a
Resolution
pdb|3KVM|A Chain A, Crystal Structure Of Human Dihydroorotate Dehydrogenase
(Dhodh) With Amino-Benzoic Acid Inhibitor 951 At 2.00a
Resolution
Length = 390
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 328 KVTRPILGIKFAPDQS----------VEQLGVSGVLVLDAPPNGPAGKAGLLSTK 372
+V RP + +K APD + V++LG+ G++V + + PAG G L ++
Sbjct: 240 RVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSE 294
>pdb|2B0M|A Chain A, Human Dihydroorotate Dehydrogenase Bound To A Novel
Inhibitor
Length = 393
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 328 KVTRPILGIKFAPDQS----------VEQLGVSGVLVLDAPPNGPAGKAGLLSTK 372
+V RP + +K APD + V++LG+ G++V + + PAG G L ++
Sbjct: 243 RVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSE 297
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 367 GLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEV 416
GL + + +A L +GD I SVNG+ +S+ + + K G EV++EV
Sbjct: 36 GLAADQTEA---LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|2BXV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2PRH|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRL|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|2PRM|A Chain A, The Structures Of Apo- And Inhibitor Bound Human
Dihydroorotate Dehydrogenase Reveal Conformational
Flexibility Within The Inhibitor Binding Site
pdb|3F1Q|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 1
pdb|3FJ6|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 2
pdb|3FJL|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 3
pdb|3G0U|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 4
pdb|3G0X|A Chain A, Human Dihydroorotate Dehydrogenase In Complex With A
Leflunomide Derivative Inhibitor 5
pdb|3ZWS|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
pdb|3ZWT|A Chain A, Structure Of Human Dihydroorotate Dehydrogenase With A
Bound Inhibitor
Length = 367
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 328 KVTRPILGIKFAPDQS----------VEQLGVSGVLVLDAPPNGPAGKAGLLSTK 372
+V RP + +K APD + V++LG+ G++V + + PAG G L ++
Sbjct: 217 RVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSE 271
>pdb|2FPT|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPV|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FPY|A Chain A, Dual Binding Mode Of A Novel Series Of Dhodh Inhibitors
pdb|2FQI|A Chain A, Dual Binding Modes Of A Novel Series Of Dhodh Inhibitors
Length = 395
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 328 KVTRPILGIKFAPDQS----------VEQLGVSGVLVLDAPPNGPAGKAGLLSTK 372
+V RP + +K APD + V++LG+ G++V + + PAG G L ++
Sbjct: 245 RVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSE 299
>pdb|3U2O|A Chain A, Dihydroorotate Dehydrogenase (Dhodh) Crystal Structure In
Complex With Small Molecule Inhibitor
Length = 395
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 328 KVTRPILGIKFAPDQS----------VEQLGVSGVLVLDAPPNGPAGKAGLLSTK 372
+V RP + +K APD + V++LG+ G++V + + PAG G L ++
Sbjct: 245 RVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSE 299
>pdb|2WV8|A Chain A, Complex Of Human Dihydroorotate Dehydrogenase With The
Inhibitor 221290
Length = 365
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 328 KVTRPILGIKFAPDQS----------VEQLGVSGVLVLDAPPNGPAGKAGLLSTK 372
+V RP + +K APD + V++LG+ G++V + + PAG G L ++
Sbjct: 215 RVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSE 269
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 28.1 bits (61), Expect = 9.4, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 367 GLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEV 416
GL + + +A L +GD I SVNG+ +S+ + + K G EV++EV
Sbjct: 36 GLAADQTEA---LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 350 SGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGS-DLYRILDQCKV 408
+GV V D G A DA GRL+ GD I VNG+ V N + + L +C +
Sbjct: 29 TGVFVSDIVKGGIA----------DADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL 78
Query: 409 GDEVIVEVLR 418
G V +EV R
Sbjct: 79 G-TVTLEVGR 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,555,569
Number of Sequences: 62578
Number of extensions: 468670
Number of successful extensions: 1250
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 83
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)