BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013805
(436 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 203/421 (48%), Gaps = 32/421 (7%)
Query: 43 DIWSVRRLVEWRPCKWWLHGHLTPFPAKSNGYICVDCYGGLNQMRRDFCDGVGVAHLLNA 102
++W + WRP P ++NGY+ V C GGLNQ R C+ V A ++NA
Sbjct: 61 ELWESAKSGGWRPSSA-PRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNA 119
Query: 103 TLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEISSKEPFHVDCSKRK 162
TLVLP+ + ++W++ S F I++ ++FI+ + VK+V ++P + + + + +
Sbjct: 120 TLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQIR 179
Query: 163 GQFD-----YVESVLPALLEHKYISLTP---AMSQRRDRYPRFAKAALCQACYSALRLTR 214
D Y+ + L A+ EH I LTP +++ D P + + C+ Y ALR
Sbjct: 180 PPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDN-PEYQRLR-CRVNYHALRFKP 237
Query: 215 SLQKKAAELLEAIPKP--FLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWT 272
+ K + +++ + F+S+HLRFE DM+A++ C + +P + + R +
Sbjct: 238 HIMKLSESIVDKLRSQGHFMSIHLRFEMDMLAFAGC-FDIFNPEEQKILRKYRKENFADK 296
Query: 273 GEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGD---GLMEIEGLTSVYTNVV 329
+ + R GKCPLTP E LIL+A+ +T IYLAAG+ G ++ +++ +
Sbjct: 297 RLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLD 356
Query: 330 TKSALRTGEDFTRM-HGNTKAALDYYVSINSDSYMATYFG--NMDKMVAAMRAFKGLYKT 386
S++ E+ + G +A+DY V + SD +M TY G N + R + G T
Sbjct: 357 NHSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTT 416
Query: 387 LFLSRKAFAEFTYQGLEGKE--LMQALWKVHRDDFLMGR----------GSALPDCFCEF 434
+ RKA A +GK +A+ +V G ++ P+CFC+
Sbjct: 417 IRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSWPECFCQM 476
Query: 435 E 435
Sbjct: 477 N 477
>sp|B3PGJ1|AGAL_CELJU Alpha-galactosidase A OS=Cellvibrio japonicus (strain Ueda107)
GN=agaA PE=1 SV=1
Length = 404
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 67/194 (34%), Gaps = 45/194 (23%)
Query: 241 DMVAYSQCEYQGLSPTSMQAI------EAAR---------GDRKPW--TGEVAHIWRRRG 283
D V Y C+ Q ++P S A +A R GD +PW +V H WR G
Sbjct: 147 DYVKYDWCDTQDINPKSAYATMRDAIHKAGRPMLFSICEWGDNQPWEWAQDVGHSWRTTG 206
Query: 284 KC-------------------PLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSV 324
P+ + L A N + G+G+ E E
Sbjct: 207 DIYPCWNCEHNHGSWSSFGVLPILDKQAGLRKYAGPGHWNDMDMMEVGNGMTEEEDRAHF 266
Query: 325 YTNVVTKSALRTGEDFTRMHGNTKAALDY--YVSINSDSYMATYF-----GNMDKMVAAM 377
S L G D M T+A L + ++IN D G+++ + +
Sbjct: 267 SLWAFMASPLIAGNDLRNMSDTTRAILTHKETIAINQDKLGIQAMKWIDEGDLEIYIKPL 326
Query: 378 RAFKGLYKTLFLSR 391
KG Y LFL+R
Sbjct: 327 E--KGHYAVLFLNR 338
>sp|Q5RID7|SNX17_DANRE Sorting nexin-17 OS=Danio rerio GN=snx17 PE=2 SV=1
Length = 473
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 166 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 224
+Y +V+PA K +LTPA + QRR++ ++ +A + + S +KA +
Sbjct: 49 EYGNNVVPAFPPKKIFTLTPAEVDQRREQLEKYMQAVRQDPILGSSEMFNSFLRKAQQET 108
Query: 225 EAIPKPFLSLHL 236
+ IP + L +
Sbjct: 109 QQIPTEEVQLEI 120
>sp|O74728|YH93_SCHPO Uncharacterized endoplasmic reticulum membrane protein C1709.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1709.03 PE=4 SV=2
Length = 428
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 281 RRGKCPLTPNETALI------LQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 334
R CP + +L+ L +L T+IYL G++ I T VY+ + T +
Sbjct: 117 RISSCPSSNAFASLMCRYERQLDSLDNGKTTDIYLNDIGGVISIHDSTGVYSQITT-TPY 175
Query: 335 RTGEDFTRMHGNTKAALDYYVSINSD 360
++ ED+ ++ G KA++ + +S+ D
Sbjct: 176 KSLEDYEQLFGEDKASM-FDISVKQD 200
>sp|Q5EA77|SNX17_BOVIN Sorting nexin-17 OS=Bos taurus GN=SNX17 PE=2 SV=1
Length = 470
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 166 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 224
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 225 EAIPKPFLSLHL 236
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
>sp|Q5R4A5|SNX17_PONAB Sorting nexin-17 OS=Pongo abelii GN=SNX17 PE=2 SV=1
Length = 470
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 166 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 224
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 225 EAIPKPFLSLHL 236
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
>sp|Q6AYS6|SNX17_RAT Sorting nexin-17 OS=Rattus norvegicus GN=Snx17 PE=1 SV=1
Length = 470
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 166 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 224
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 225 EAIPKPFLSLHL 236
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
>sp|Q15036|SNX17_HUMAN Sorting nexin-17 OS=Homo sapiens GN=SNX17 PE=1 SV=1
Length = 470
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 166 DYVESVLPALLEHKYISLTPA-MSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELL 224
+Y +VLPA K SLTPA + QRR++ ++ +A + S ++A +
Sbjct: 50 EYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQET 109
Query: 225 EAIPKPFLSLHL 236
+ +P +SL +
Sbjct: 110 QQVPTEEVSLEV 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,819,470
Number of Sequences: 539616
Number of extensions: 6546270
Number of successful extensions: 14152
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14145
Number of HSP's gapped (non-prelim): 9
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)