Query 013805
Match_columns 436
No_of_seqs 171 out of 423
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 2.3E-52 5E-57 415.9 1.7 291 79-385 6-346 (351)
2 KOG3849 GDP-fucose protein O-f 97.9 0.00011 2.4E-09 73.4 11.1 276 70-383 27-369 (386)
3 PF05830 NodZ: Nodulation prot 97.3 0.0085 1.8E-07 61.0 15.0 252 72-373 2-290 (321)
4 PF14771 DUF4476: Domain of un 68.9 1.9 4.1E-05 36.1 0.5 54 286-351 39-92 (95)
5 KOG3705 Glycoprotein 6-alpha-L 61.6 34 0.00075 36.8 8.0 125 209-369 340-475 (580)
6 PF00799 Gemini_AL1: Geminivir 41.3 26 0.00057 31.0 3.0 29 284-313 14-42 (114)
7 PF10892 DUF2688: Protein of u 36.5 25 0.00053 27.8 1.8 16 283-299 42-57 (60)
8 PRK11611 enhanced serine sensi 29.5 58 0.0013 32.6 3.6 74 281-359 99-182 (246)
9 PRK05578 cytidine deaminase; V 28.5 45 0.00097 30.1 2.4 48 287-335 83-131 (131)
10 TIGR01354 cyt_deam_tetra cytid 28.0 51 0.0011 29.3 2.7 47 287-334 80-127 (127)
11 COG2134 Cdh CDP-diacylglycerol 27.9 38 0.00083 33.4 1.9 57 50-133 49-113 (252)
12 smart00874 B5 tRNA synthetase 27.3 57 0.0012 25.3 2.6 24 279-303 12-35 (71)
13 PRK10556 hypothetical protein; 26.8 42 0.00092 29.4 1.8 20 287-306 3-22 (111)
14 PLN02232 ubiquinone biosynthes 26.2 64 0.0014 29.2 3.0 28 286-313 125-152 (160)
15 PRK15451 tRNA cmo(5)U34 methyl 23.8 86 0.0019 30.4 3.6 28 281-308 203-230 (247)
16 PF09400 DUF2002: Protein of u 23.4 46 0.00099 29.4 1.4 19 287-305 3-21 (111)
17 COG0859 RfaF ADP-heptose:LPS h 20.8 1.1E+02 0.0024 31.0 3.9 73 290-378 198-271 (334)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=2.3e-52 Score=415.92 Aligned_cols=291 Identities=28% Similarity=0.432 Sum_probs=198.1
Q ss_pred ecCChhhHHHHHHHHHHHHHhhcceeeccccccccccCCCCC-----CcccCcHHHHHHhccCCcEEeccCCccccCCCC
Q 013805 79 CYGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNESSD-----FADIFEADYFIQHMDGFVKVVKELPPEISSKEP 153 (436)
Q Consensus 79 ~~GGLnq~R~~IcdaV~vAriLnATLViP~l~~~s~W~D~S~-----F~dIFD~dhFI~sL~~dVrIvk~LP~~~~~~~~ 153 (436)
+.||+||||.++++||++|++||+|||||.+...+.|++.++ |+++||++||++.++++|++.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999999999999987 999999999999999899999888854433210
Q ss_pred -------------------------------ccccccC-CCCccchHHhhhhhhhcC------ceEEEccccccccc-CC
Q 013805 154 -------------------------------FHVDCSK-RKGQFDYVESVLPALLEH------KYISLTPAMSQRRD-RY 194 (436)
Q Consensus 154 -------------------------------~~~~~~~-~~s~~~Y~~~vlp~l~k~------~vi~l~p~~~~~~~-~~ 194 (436)
....... +.++..|+++++|.+.++ +|+.|.++...+.+ ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 0001111 223446788888888876 99999988777654 36
Q ss_pred hhhHhhHhHHHhhcccccchHHHHHHHHHHHhcC---CCeeEeecccchhhhhhcccccCCCChhHHHHHHHHhcCCCCC
Q 013805 195 PRFAKAALCQACYSALRLTRSLQKKAAELLEAIP---KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPW 271 (436)
Q Consensus 195 P~~~q~LRCrv~f~ALrF~~~I~~lg~~lv~Rm~---g~yiAlHLR~E~DmlafsgC~~~g~~~~e~e~l~~~R~~~~~w 271 (436)
+.++|+ +|+|+++|+++|++++++|. ++|||+|||+|+|| +++|.+ ++ +.+.|+..|... .
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~-~~---~~~~~~~~~~~~--~ 229 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEF-KG---ERHLLASPRCWG--K 229 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT--T-------TTTHHHH---G
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--Hhhccc-CC---chHHHHHhHhhc--c
Confidence 677765 99999999999999999987 89999999999999 889998 44 445566666320 0
Q ss_pred CcchhhhhhcCCCCCCCHHHHHHHHHHcCCCCccEEEEeecC---CchhhHHHHHhcccccccccCCChhhhccccCCcc
Q 013805 272 TGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGD---GLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTK 348 (436)
Q Consensus 272 ~~~~~~~~R~~G~CPLtPeEvgl~LralGf~~~T~IYlA~ge---g~~~l~~L~~~FPnl~tKe~L~~~eEL~~~~s~~~ 348 (436)
+...+...+..+.||++|++++.+++++|+.+.|.||||+++ |...|++|++.||++++|+++.+.+|++++...++
T Consensus 230 ~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (351)
T PF10250_consen 230 KSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLNDDQL 309 (351)
T ss_dssp GGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-----S--
T ss_pred ccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccccch
Confidence 111234567889999999999999999999999999999999 67789999999999999999999999999988999
Q ss_pred cceeeEEeecCceeeecCCCchHHHHHHHHhhcCCCe
Q 013805 349 AALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYK 385 (436)
Q Consensus 349 AAlDyiVc~~SDvFv~t~~Gnfa~~V~GhR~y~G~~k 385 (436)
|+||++||++||+||+|..++|+.+|+++|+|.|+.+
T Consensus 310 a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~~ 346 (351)
T PF10250_consen 310 AMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKPK 346 (351)
T ss_dssp HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS-
T ss_pred hHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCCC
Confidence 9999999999999999998889999999999999663
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00011 Score=73.36 Aligned_cols=276 Identities=16% Similarity=0.262 Sum_probs=149.7
Q ss_pred CCCceEEE-EecCChhhHHHHHHHHHHHHHhhcceeeccccc---cccccCCCCCCcccCcHHH------------HHHh
Q 013805 70 KSNGYICV-DCYGGLNQMRRDFCDGVGVAHLLNATLVLPKFE---VAAYWNESSDFADIFEADY------------FIQH 133 (436)
Q Consensus 70 ~snGyl~v-~~~GGLnq~R~~IcdaV~vAriLnATLViP~l~---~~s~W~D~S~F~dIFD~dh------------FI~s 133 (436)
..||||+. .|-|-..||-....-..|.|+.||.|||+|..- +-.+=+---.|...|.++- |++.
T Consensus 27 DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vepl~~YhRVitm~dFm~k 106 (386)
T KOG3849|consen 27 DPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEPLAKYHRVITMQDFMKK 106 (386)
T ss_pred CCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeecccHhhhhhheeHHHHHHH
Confidence 57999988 699999999999999999999999999999753 2222111236777787753 4444
Q ss_pred ccCCc-----E--Eecc-----CCcc----ccCCCCccccccCC----CCccc---------hH---Hhhhhh--hhcCc
Q 013805 134 MDGFV-----K--VVKE-----LPPE----ISSKEPFHVDCSKR----KGQFD---------YV---ESVLPA--LLEHK 179 (436)
Q Consensus 134 L~~dV-----r--Ivk~-----LP~~----~~~~~~~~~~~~~~----~s~~~---------Y~---~~vlp~--l~k~~ 179 (436)
|..+. | |..+ -|+. .+..+|+..-|..- ...++ |. ++-+.. -.++-
T Consensus 107 lapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqfhvsFv~sE~f~~i~Fd~~~~~~~~kW~~kfp~eeyP 186 (386)
T KOG3849|consen 107 LAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQFHVSFVGSEYFGDIGFDLNQMGSRKKWLEKFPSEEYP 186 (386)
T ss_pred hCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCCCCchhheEeeeeccccccccccchhhcchHHHHHhhCCcccCc
Confidence 44322 1 1110 0110 01112221100000 00000 11 111221 12345
Q ss_pred eEEEcc----cccccccCChhhHhhHhHHHhhcccccchHHHHHHHHHHH-hcCCCeeEeecccchhhhhhcccccCCCC
Q 013805 180 YISLTP----AMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLE-AIPKPFLSLHLRFEPDMVAYSQCEYQGLS 254 (436)
Q Consensus 180 vi~l~p----~~~~~~~~~P~~~q~LRCrv~f~ALrF~~~I~~lg~~lv~-Rm~g~yiAlHLR~E~DmlafsgC~~~g~~ 254 (436)
|+.|+. |-.. ...+| +|+ -||.+.+|.+.|++.+. .|.+||+++|||...||+-- |.+-.-+
T Consensus 187 VLAf~gAPA~FPv~-~e~~~--lQk--------Yl~WS~r~~e~~k~fI~a~L~rpfvgiHLRng~DWvra--Cehikd~ 253 (386)
T KOG3849|consen 187 VLAFSGAPAPFPVK-GEVWS--LQK--------YLRWSSRITEQAKKFISANLARPFVGIHLRNGADWVRA--CEHIKDT 253 (386)
T ss_pred eeeecCCCCCCccc-ccccc--HHH--------HHHHHHHHHHHHHHHHHHhcCcceeEEEeecCchHHHH--HHHhccc
Confidence 555542 2111 11222 443 38899999999999665 57789999999999999863 7641110
Q ss_pred hhHHHHHHHHhcCCCCCCcch--hhhhh-----cCCCCCCCHHHHH----HHHHHcCCCCccEEEEeecCCchhhHHHH-
Q 013805 255 PTSMQAIEAARGDRKPWTGEV--AHIWR-----RRGKCPLTPNETA----LILQALSIPTNTNIYLAAGDGLMEIEGLT- 322 (436)
Q Consensus 255 ~~e~e~l~~~R~~~~~w~~~~--~~~~R-----~~G~CPLtPeEvg----l~LralGf~~~T~IYlA~geg~~~l~~L~- 322 (436)
+ -.+.-... -...+ ....|-=+-+|+- +-.+.+| .--.+|+|+-.. .-+.-|.
T Consensus 254 -~-----------~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~--dakSVfVAsDs~-hmi~Eln~ 318 (386)
T KOG3849|consen 254 -T-----------NRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIG--DAKSVFVASDSD-HMIDELNE 318 (386)
T ss_pred -C-----------CCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhc--ccceEEEeccch-hhhHHHHH
Confidence 0 00111100 00001 1234544444442 2223333 233699998762 2222232
Q ss_pred HhcccccccccCCChhhhccccCCcccceeeEEeecCceeeecCCCchHHHHHHHHhhcCC
Q 013805 323 SVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGL 383 (436)
Q Consensus 323 ~~FPnl~tKe~L~~~eEL~~~~s~~~AAlDyiVc~~SDvFv~t~~Gnfa~~V~GhR~y~G~ 383 (436)
+++|-=+.-.. | ..--+-+|..|.-+||.||++--++|+..|.-.|-..|+
T Consensus 319 aL~~~~i~vh~------l----~pdd~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~Gr 369 (386)
T KOG3849|consen 319 ALKPYEIEVHR------L----EPDDMYTDLAILGQADHFIGNCVSSFSAFVKRERDHAGR 369 (386)
T ss_pred hhcccceeEEe------c----CcccchhhhhhhcccchhhhhhHHHHHHHHhhhhcccCC
Confidence 22332110000 1 122356888999999999999999999999999988883
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=97.26 E-value=0.0085 Score=61.00 Aligned_cols=252 Identities=17% Similarity=0.266 Sum_probs=121.7
Q ss_pred CceEEEEecCChhhHHHHHHHHHHHHHhhcceeeccccccccccCCC----CCCcccCcHHHHHHhcc--CCcEEeccCC
Q 013805 72 NGYICVDCYGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNES----SDFADIFEADYFIQHMD--GFVKVVKELP 145 (436)
Q Consensus 72 nGyl~v~~~GGLnq~R~~IcdaV~vAriLnATLViP~l~~~s~W~D~----S~F~dIFD~dhFI~sL~--~dVrIvk~LP 145 (436)
+.|++.+--+|+|.-=-+++-|-.+|+-.|.||||= |+++ ..|...|++ |-+-.+ ..|+|+-.-+
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~d~ 72 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICDDR 72 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-SGG
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEecch
Confidence 578888999999999999999999999999999984 5553 456666654 333333 3455541111
Q ss_pred -ccccCCCCc--------cccccCCCCccchH---Hhhhhhhh-------cCceEEEcccccccccCChhhHhhHhHHHh
Q 013805 146 -PEISSKEPF--------HVDCSKRKGQFDYV---ESVLPALL-------EHKYISLTPAMSQRRDRYPRFAKAALCQAC 206 (436)
Q Consensus 146 -~~~~~~~~~--------~~~~~~~~s~~~Y~---~~vlp~l~-------k~~vi~l~p~~~~~~~~~P~~~q~LRCrv~ 206 (436)
.+++-.-++ .+.+-.+ |..|+ .+-|..|. .+.||.-.=.+++ -+-+..|| -
T Consensus 73 i~~~~~~g~~fp~~w~~p~~~~~~~--pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~~------c~~~aeR~--i 142 (321)
T PF05830_consen 73 INQFSFPGPFFPAWWNKPSIDCVYR--PDEQIFRERDELRQLFQSQEDHEANTVVCDACLMWR------CDEEAERE--I 142 (321)
T ss_dssp GGT----SSEESGGGGS-GGGGS-----HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TTS------S-HHHHHH--H
T ss_pred hhhhcCCCCcChhHHhCCCcceecC--ChHHHhhhhHHHHHHhhcccccccchhhhHhhcCCc------chhHHHHH--H
Confidence 111111111 1111111 22232 11333332 2246665555443 12233343 4
Q ss_pred hcccccchHHHHHHHHHHHh-cCC-CeeEeecccc--hhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcchhhhhhcC
Q 013805 207 YSALRLTRSLQKKAAELLEA-IPK-PFLSLHLRFE--PDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRR 282 (436)
Q Consensus 207 f~ALrF~~~I~~lg~~lv~R-m~g-~yiAlHLR~E--~DmlafsgC~~~g~~~~e~e~l~~~R~~~~~w~~~~~~~~R~~ 282 (436)
|..|+-+++|++..+.+.++ +.| .=|++|.|.- +|.+.+ +|++ .++.-.|...
T Consensus 143 f~slkpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h-~~~~----~D~e~~L~~V------------------ 199 (321)
T PF05830_consen 143 FSSLKPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDH-APYW----ADEERALRQV------------------ 199 (321)
T ss_dssp HHHS-B-HHHHHHHHHHHHHHTTTSEEEEEEE--------------------HHHHHHHHHH------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhcc-Cccc----cCchHHHHHH------------------
Confidence 89999999999999998766 454 4899999932 233332 2221 1110011100
Q ss_pred CCCCCCHHHHHHHHHHcCCCCccEEEEeecCCchhhHHHHHhcccccccccCCChhhhccccC-------CcccceeeEE
Q 013805 283 GKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHG-------NTKAALDYYV 355 (436)
Q Consensus 283 G~CPLtPeEvgl~LralGf~~~T~IYlA~geg~~~l~~L~~~FPnl~tKe~L~~~eEL~~~~s-------~~~AAlDyiV 355 (436)
......++++-...++.|+||+=. ...++-+++.||.+++-++=..+..-.++|+ -..|-+|-+.
T Consensus 200 -------~~ai~~ak~~~~~k~~~IFLATDS-aeVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~L 271 (321)
T PF05830_consen 200 -------CTAIDKAKALAPPKPVRIFLATDS-AEVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYL 271 (321)
T ss_dssp -------HHHHHHHHTS--SS-EEEEEEES--HHHHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhccCCCCeeEEEecCc-HHHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHH
Confidence 011123455666778999999877 4668899999999887755333222112332 2458899999
Q ss_pred eecCceee-ecCCCchHHH
Q 013805 356 SINSDSYM-ATYFGNMDKM 373 (436)
Q Consensus 356 c~~SDvFv-~t~~Gnfa~~ 373 (436)
..++|+-| .+-.+.|.+.
T Consensus 272 LSrCD~LIr~~ptS~Fsr~ 290 (321)
T PF05830_consen 272 LSRCDYLIRFPPTSAFSRY 290 (321)
T ss_dssp HTTSSEEEEESTT-GGGHH
T ss_pred HHhCCeEEEcCCCchhhhH
Confidence 99999999 5666666654
No 4
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=68.85 E-value=1.9 Score=36.09 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHcCCCCccEEEEeecCCchhhHHHHHhcccccccccCCChhhhccccCCcccce
Q 013805 286 PLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAAL 351 (436)
Q Consensus 286 PLtPeEvgl~LralGf~~~T~IYlA~geg~~~l~~L~~~FPnl~tKe~L~~~eEL~~~~s~~~AAl 351 (436)
++|-.+++-+|+...|+ ..+|+.++.++|++++++.--+-.+.-.|.+++..|-
T Consensus 39 ~~T~~Qv~~il~~f~fd------------~~kl~~lk~l~p~i~D~~n~~~i~~~f~f~s~k~~~~ 92 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD------------NDKLKALKLLYPYIVDPQNYYTIIDAFSFSSDKDKAR 92 (95)
T ss_pred ceeHHHHHHHHHHcCCC------------HHHHHHHHHHhhhccCHHHHHHHHHHhcCcccHHHHH
Confidence 49999999999999999 6789999999999999974332222223444444443
No 5
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.59 E-value=34 Score=36.81 Aligned_cols=125 Identities=20% Similarity=0.308 Sum_probs=77.3
Q ss_pred ccccchHHHHHHHHHHHhcC--CCeeEeecccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcchhhhhhcCCCCC
Q 013805 209 ALRLTRSLQKKAAELLEAIP--KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP 286 (436)
Q Consensus 209 ALrF~~~I~~lg~~lv~Rm~--g~yiAlHLR~E~DmlafsgC~~~g~~~~e~e~l~~~R~~~~~w~~~~~~~~R~~G~CP 286 (436)
-+||+|-.++.-++-...+. .|-|++|.|-- |=+ |+++---.++.+=. |-
T Consensus 340 L~Rpqp~t~~~l~~a~k~lg~~~PivGvhvRRT-DKV---------GTEAAfH~~eEYM~----~v-------------- 391 (580)
T KOG3705|consen 340 LMRPQPATQEKLDKALKSLGLDKPIVGVHVRRT-DKV---------GTEAAFHALEEYME----WV-------------- 391 (580)
T ss_pred HhCCChhhHHHHHHHHHhCCCCCceeeEEEEec-ccc---------cchhhhhhHHHHHH----HH--------------
Confidence 68999999999888888875 79999999964 211 11111112222211 11
Q ss_pred CCHHHHHHHHHHcCCCCccEEEEeecCCchhhHHHHHhcccccccccCCChhhhcc---c------cCCcccceeeEEee
Q 013805 287 LTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTR---M------HGNTKAALDYYVSI 357 (436)
Q Consensus 287 LtPeEvgl~LralGf~~~T~IYlA~geg~~~l~~L~~~FPnl~tKe~L~~~eEL~~---~------~s~~~AAlDyiVc~ 357 (436)
|+-=.+|..=|=+-.-+||||+-+. ..+.--|..|||. .+.+..|.+. . .+..---+|..+.+
T Consensus 392 ---E~~f~~le~rg~~~~rRiflAsDDp-~vv~EAk~kYPnY----e~igd~eia~~A~l~nRYTd~sL~GvIlDIh~LS 463 (580)
T KOG3705|consen 392 ---EIWFKVLEKRGKPLERRIFLASDDP-TVVPEAKNKYPNY----EVIGDTEIAKTAQLNNRYTDASLMGVILDIHILS 463 (580)
T ss_pred ---HHHHHHHHHhCCchhheEEEecCCc-hhchHhhccCCCc----EEeccHHHHHHhhccccchhhhhhheeeeeeeec
Confidence 1112233333555667999999883 3345567789985 3455555543 1 12233457888888
Q ss_pred cCceeeecCCCc
Q 013805 358 NSDSYMATYFGN 369 (436)
Q Consensus 358 ~SDvFv~t~~Gn 369 (436)
.+|..|.|+++-
T Consensus 464 ~~d~LVCTFSSQ 475 (580)
T KOG3705|consen 464 KVDYLVCTFSSQ 475 (580)
T ss_pred ccceEEEechHH
Confidence 889888888765
No 6
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=41.35 E-value=26 Score=31.05 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCccEEEEeecC
Q 013805 284 KCPLTPNETALILQALSIPTNTNIYLAAGD 313 (436)
Q Consensus 284 ~CPLtPeEvgl~LralGf~~~T~IYlA~ge 313 (436)
.|||||||+...|+++--+ ....||..+.
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~r 42 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVCR 42 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEeec
Confidence 6999999999999999764 4677876654
No 7
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=36.48 E-value=25 Score=27.83 Aligned_cols=16 Identities=50% Similarity=0.904 Sum_probs=13.5
Q ss_pred CCCCCCHHHHHHHHHHc
Q 013805 283 GKCPLTPNETALILQAL 299 (436)
Q Consensus 283 G~CPLtPeEvgl~Lral 299 (436)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 556 9999999999875
No 8
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=29.47 E-value=58 Score=32.61 Aligned_cols=74 Identities=20% Similarity=0.344 Sum_probs=47.7
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCccEEEEeecC----C------chhhHHHHHhcccccccccCCChhhhccccCCcccc
Q 013805 281 RRGKCPLTPNETALILQALSIPTNTNIYLAAGD----G------LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAA 350 (436)
Q Consensus 281 ~~G~CPLtPeEvgl~LralGf~~~T~IYlA~ge----g------~~~l~~L~~~FPnl~tKe~L~~~eEL~~~~s~~~AA 350 (436)
..|++ ++|+||..+|..-|....+..-|-.|. | ..-++.|+..|.+- .-.-..=|...+......
T Consensus 99 ~~gk~-f~p~EI~~LL~~~~~~~~~~~~i~~g~~v~lg~p~~~P~~lv~~L~~lf~~~----k~V~rAyL~~~~~~~d~~ 173 (246)
T PRK11611 99 PTGKE-FMPREISLLLGEEGNPLSSQEVLEGGESLLLSEVAEPPAQMIDSLTTLFKTI----KPVKRAFLASIKENADAQ 173 (246)
T ss_pred CCCcc-cCHHHHHHHHhccCCCcceeEEeCCCCEEEecCCccchHHHHHHHHHHHhhc----chHHHHHHHHHhccCCCC
Confidence 35777 999999999999999999999888777 2 23346777766531 111111122222222455
Q ss_pred eeeEEeecC
Q 013805 351 LDYYVSINS 359 (436)
Q Consensus 351 lDyiVc~~S 359 (436)
..++|+++.
T Consensus 174 p~LLI~le~ 182 (246)
T PRK11611 174 PNLLIGIEA 182 (246)
T ss_pred CceEEEEec
Confidence 568888877
No 9
>PRK05578 cytidine deaminase; Validated
Probab=28.47 E-value=45 Score=30.05 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=35.3
Q ss_pred CCHHHH-HHHHHHcCCCCccEEEEeecCCchhhHHHHHhcccccccccCC
Q 013805 287 LTPNET-ALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALR 335 (436)
Q Consensus 287 LtPeEv-gl~LralGf~~~T~IYlA~geg~~~l~~L~~~FPnl~tKe~L~ 335 (436)
.+|==. -.+|..++ +.+|.||+...++......|+++.|.-+++++|+
T Consensus 83 ~sPCG~CRQ~l~e~~-~~~~~v~l~~~~~~~~~~~l~eLLP~~f~~~~l~ 131 (131)
T PRK05578 83 LSPCGRCRQVLAEFG-GPDLLVTLVAKDGPTGEMTLGELLPYAFTPDDLG 131 (131)
T ss_pred cCccHHHHHHHHHhC-CCCcEEEEEcCCCCEEEEEHHHhCcCcCChhhcC
Confidence 444333 35566664 5789999998887666688999999998888764
No 10
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=28.01 E-value=51 Score=29.25 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=36.2
Q ss_pred CCHHHH-HHHHHHcCCCCccEEEEeecCCchhhHHHHHhcccccccccC
Q 013805 287 LTPNET-ALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 334 (436)
Q Consensus 287 LtPeEv-gl~LralGf~~~T~IYlA~geg~~~l~~L~~~FPnl~tKe~L 334 (436)
++|--+ -.+|..++ +.++.|++...++.....+|+++.|.-+.+++|
T Consensus 80 ~sPCG~Crq~l~e~~-~~~~~v~~~~~~~~~~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 80 VSPCGACRQVLAEFA-GPDTPIYMTNNDGTYKVYTVGELLPFGFGPSDL 127 (127)
T ss_pred cCccHHHHHHHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCcCCcCcC
Confidence 556555 36788887 668999999988766667899999988877654
No 11
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=27.89 E-value=38 Score=33.43 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=37.1
Q ss_pred CCCccccccCCCCCCCCCCCCCCceEEEEecCChhhHHHHHHHHHHHHHhhcceeeccccccccccCC-----CC---CC
Q 013805 50 LVEWRPCKWWLHGHLTPFPAKSNGYICVDCYGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNE-----SS---DF 121 (436)
Q Consensus 50 ~~~~~pC~~~~~~~~~~~~~~snGyl~v~~~GGLnq~R~~IcdaV~vAriLnATLViP~l~~~s~W~D-----~S---~F 121 (436)
...+.||.. ..+.-||.......|++|- |.||.-+-+-. .| ++ =|
T Consensus 49 ~~~paPCae---------V~~~AG~av~Kd~~gPlQy-----------------LLmPt~rItGi-EsP~L~e~atpNyf 101 (252)
T COG2134 49 NQNPAPCAE---------VKPQAGYAVLKDRNGPLQY-----------------LLMPTARITGI-ESPLLLEPATPNYF 101 (252)
T ss_pred cCCCCCcee---------ecCCCceEEEeccCCCcee-----------------EeeeeecccCC-cChhhcCCCCccHH
Confidence 467788853 3357799999999999883 66666655544 22 22 34
Q ss_pred cccCcHHHHHHh
Q 013805 122 ADIFEADYFIQH 133 (436)
Q Consensus 122 ~dIFD~dhFI~s 133 (436)
-+-.....|++.
T Consensus 102 ~~AWqAR~fms~ 113 (252)
T COG2134 102 YLAWQARDFMSK 113 (252)
T ss_pred HHHHHHHHHHHH
Confidence 455566777765
No 12
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=27.30 E-value=57 Score=25.35 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.1
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCCCC
Q 013805 279 WRRRGKCPLTPNETALILQALSIPT 303 (436)
Q Consensus 279 ~R~~G~CPLtPeEvgl~LralGf~~ 303 (436)
.+..|.. ++++|+..+|+.|||+-
T Consensus 12 ~~llG~~-i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGLD-LSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCCC-CCHHHHHHHHHHCCCeE
Confidence 3566754 99999999999999984
No 13
>PRK10556 hypothetical protein; Provisional
Probab=26.78 E-value=42 Score=29.39 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHcCCCCccE
Q 013805 287 LTPNETALILQALSIPTNTN 306 (436)
Q Consensus 287 LtPeEvgl~LralGf~~~T~ 306 (436)
|-|.||+.+|+..||..+..
T Consensus 3 LRPDEVArVLe~aGF~~D~v 22 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDVV 22 (111)
T ss_pred cChHHHHHHHHhcCceEEEe
Confidence 67999999999999987653
No 14
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=26.23 E-value=64 Score=29.22 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHcCCCCccEEEEeecC
Q 013805 286 PLTPNETALILQALSIPTNTNIYLAAGD 313 (436)
Q Consensus 286 PLtPeEvgl~LralGf~~~T~IYlA~ge 313 (436)
+++|+|+..+|+..||.+-+.-+++.|-
T Consensus 125 f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 125 YLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred CcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 4899999999999999999888887764
No 15
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=23.82 E-value=86 Score=30.38 Aligned_cols=28 Identities=4% Similarity=-0.091 Sum_probs=22.5
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCccEEE
Q 013805 281 RRGKCPLTPNETALILQALSIPTNTNIY 308 (436)
Q Consensus 281 ~~G~CPLtPeEvgl~LralGf~~~T~IY 308 (436)
.+-..|+|++|...+|+..||..-..+|
T Consensus 203 ~~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 203 ENVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred HhhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 3456789999999999999999755444
No 16
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=23.43 E-value=46 Score=29.42 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHcCCCCcc
Q 013805 287 LTPNETALILQALSIPTNT 305 (436)
Q Consensus 287 LtPeEvgl~LralGf~~~T 305 (436)
|-|.||+.+|+..||..+.
T Consensus 3 lrpdeva~vle~~gf~~d~ 21 (111)
T PF09400_consen 3 LRPDEVARVLEKAGFERDY 21 (111)
T ss_dssp --HHHHHHHHHHTT-EEEE
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998654
No 17
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.84 E-value=1.1e+02 Score=31.01 Aligned_cols=73 Identities=23% Similarity=0.152 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCCccEEEEeecCC-chhhHHHHHhcccccccccCCChhhhccccCCcccceeeEEeecCceeeecCCC
Q 013805 290 NETALILQALSIPTNTNIYLAAGDG-LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFG 368 (436)
Q Consensus 290 eEvgl~LralGf~~~T~IYlA~geg-~~~l~~L~~~FPnl~tKe~L~~~eEL~~~~s~~~AAlDyiVc~~SDvFv~t~~G 368 (436)
.|++..|.+-| .+|.+.+|.. .+..+-+.+..++.+. |+.+..|.. .++|- ..||.||++.+|
T Consensus 198 ~~l~~~l~~~~----~~Vvl~g~~~e~e~~~~i~~~~~~~~~---l~~k~sL~e-----~~~li----~~a~l~I~~DSg 261 (334)
T COG0859 198 AELAELLIAKG----YQVVLFGGPDEEERAEEIAKGLPNAVI---LAGKTSLEE-----LAALI----AGADLVIGNDSG 261 (334)
T ss_pred HHHHHHHHHCC----CEEEEecChHHHHHHHHHHHhcCCccc---cCCCCCHHH-----HHHHH----hcCCEEEccCCh
Confidence 46778888888 6899999883 3445678778887554 544444432 22222 578999999999
Q ss_pred chHHHHHHHH
Q 013805 369 NMDKMVAAMR 378 (436)
Q Consensus 369 nfa~~V~GhR 378 (436)
-|.=+-+.++
T Consensus 262 ~~HlAaA~~~ 271 (334)
T COG0859 262 PMHLAAALGT 271 (334)
T ss_pred HHHHHHHcCC
Confidence 7665555544
Done!