Query 013805
Match_columns 436
No_of_seqs 171 out of 423
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 17:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 5.1E-15 1.7E-19 151.0 13.9 297 68-385 18-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.4 1.3E-12 4.5E-17 131.6 15.8 274 70-382 6-348 (362)
3 2hhc_A NODZ, nodulation fucosy 97.4 0.0049 1.7E-07 60.4 16.7 263 71-375 3-294 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 97.4 0.014 4.7E-07 62.0 20.9 250 71-382 144-421 (526)
5 1wgl_A TOLL-interacting protei 32.0 3.1 0.0001 31.6 -2.8 48 315-365 10-57 (59)
6 1l2m_A REP protein; A+B fold, 24.1 71 0.0024 27.4 4.0 30 283-313 16-45 (118)
7 2g7j_A Putative cytoplasmic pr 23.4 31 0.0011 29.5 1.6 19 287-305 3-21 (124)
8 2fr5_A Cytidine deaminase; tet 21.4 51 0.0017 28.9 2.7 98 232-334 38-142 (146)
9 2lx0_A Membrane fusion protein 16.0 1.2E+02 0.004 19.9 2.7 21 3-24 2-22 (32)
10 2d30_A Cytidine deaminase; pur 15.9 74 0.0025 27.8 2.4 99 231-334 34-139 (141)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.60 E-value=5.1e-15 Score=150.96 Aligned_cols=297 Identities=18% Similarity=0.201 Sum_probs=170.4
Q ss_pred CCCCCceEEEEe-cC-ChhhHHHHHHHHHHHHHhhcce----eeccccccccccCCC------CCCcccCcHHHHHHhcc
Q 013805 68 PAKSNGYICVDC-YG-GLNQMRRDFCDGVGVAHLLNAT----LVLPKFEVAAYWNES------SDFADIFEADYFIQHMD 135 (436)
Q Consensus 68 ~~~snGyl~v~~-~G-GLnq~R~~IcdaV~vAriLnAT----LViP~l~~~s~W~D~------S~F~dIFD~dhFI~sL~ 135 (436)
+...++||+-.. .| |.|+||...-.|.+.|+.||.| ||||-...-.-|+-. -.|++.||++++-+
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~~--- 94 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNK--- 94 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHHT---
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHHh---
Confidence 346899999865 45 8999999999999999999999 999966432334332 36999999987543
Q ss_pred CCcEEe------ccCCc--------------cccC---CCCcc-cccc--------CC---CCccc-hH-----------
Q 013805 136 GFVKVV------KELPP--------------EISS---KEPFH-VDCS--------KR---KGQFD-YV----------- 168 (436)
Q Consensus 136 ~dVrIv------k~LP~--------------~~~~---~~~~~-~~~~--------~~---~s~~~-Y~----------- 168 (436)
.|+|+ +++-. .... ..... ..+. +. .++++ |.
T Consensus 95 -~vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~ 173 (408)
T 4ap5_A 95 -NIPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLS 173 (408)
T ss_dssp -TSCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEE
T ss_pred -hCCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEE
Confidence 44554 11110 0000 00000 0000 00 01111 10
Q ss_pred -----HhhhhhhhcC---ceEEEcccccccccCChhhHhhHhHHHhhcccccchHHHHHHHHHHHh-cCCCeeEeecccc
Q 013805 169 -----ESVLPALLEH---KYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEA-IPKPFLSLHLRFE 239 (436)
Q Consensus 169 -----~~vlp~l~k~---~vi~l~p~~~~~~~~~P~~~q~LRCrv~f~ALrF~~~I~~lg~~lv~R-m~g~yiAlHLR~E 239 (436)
..+-|.+.+. ..+-+..+...+.+. |....-. ..-..|+|.+.|.+.|++.++. |.++|+++|+|.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~-~~~~~~~---~~~r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~ 249 (408)
T 4ap5_A 174 VQGSASIVAPLLLRNTSARSVMLDRAENLLHDH-YGGKEYW---DTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQ 249 (408)
T ss_dssp ECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSS-TTSHHHH---HHHHTCCBCHHHHHHHHHHHHHHHCCCTTTTTCCCC
T ss_pred EeecchhhhhhhhhcCChhhhhhhhcccCCccc-cchHhhh---hHHHHhhhhHHHHHHHHHHHHHHhCcccceeecccc
Confidence 0011222221 111111221222221 1111111 1124799999999999998775 6789999999999
Q ss_pred hhhhhhcccccCCCChhHHHHHHHHh-cCCCCCCcchhhhhhcCCCCCCCHHHHHHHHHHcCCCCccEEEEeecCCchhh
Q 013805 240 PDMVAYSQCEYQGLSPTSMQAIEAAR-GDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEI 318 (436)
Q Consensus 240 ~DmlafsgC~~~g~~~~e~e~l~~~R-~~~~~w~~~~~~~~R~~G~CPLtPeEvgl~LralGf~~~T~IYlA~geg~~~l 318 (436)
.|+... |...+ .+. -. ...-+|...+-. .-....+|-.++-+..+.+.+-=-+.+.||||+=+.+..+
T Consensus 250 ~dw~~~--~~~~~--~~~------~~~y~~~H~Rr~d~~-~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~~~~~ 318 (408)
T 4ap5_A 250 EDWMKM--KVKLG--SAL------GGPYLGVHLRRKDFI-WGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEY 318 (408)
T ss_dssp SSGGGC--CCCTT--CBC------CEEEEEEEECCTTTT-TTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECCCHHHH
T ss_pred hhHhhh--hcccc--ccc------CCCccccccccccch-hhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCCchhHH
Confidence 998763 43111 000 00 001112111100 0011233333333333333333234568999987666667
Q ss_pred HHHHHhcccccccccCCChhhhccccCCcccceeeEEeecCceeeecCCCchHHHHHHHHhhcCCCe
Q 013805 319 EGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYK 385 (436)
Q Consensus 319 ~~L~~~FPnl~tKe~L~~~eEL~~~~s~~~AAlDyiVc~~SDvFv~t~~Gnfa~~V~GhR~y~G~~k 385 (436)
..|++.+|.++.-.. ..+++..+.....|.||-+||.+||+||+|..++|+..|.-.|.+.|+..
T Consensus 319 ~~l~~~~~~~~~~~~--~~~~~~~~~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 319 EELKKLLPEMVRFEP--TWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp HHHHHHCTTEECCCC--CHHHHHHHHHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred HHHHHhCCCcEEecC--cchhhhccCcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 889999998654322 34455555556779999999999999999999999999999999999764
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.44 E-value=1.3e-12 Score=131.62 Aligned_cols=274 Identities=22% Similarity=0.356 Sum_probs=161.7
Q ss_pred CCCceEEE-EecCChhhHHHHHHHHHHHHHhhcceeeccccccccccCCC--CCCcccCcHHHHHHhccCCcEEec----
Q 013805 70 KSNGYICV-DCYGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNES--SDFADIFEADYFIQHMDGFVKVVK---- 142 (436)
Q Consensus 70 ~snGyl~v-~~~GGLnq~R~~IcdaV~vAriLnATLViP~l~~~s~W~D~--S~F~dIFD~dhFI~sL~~dVrIvk---- 142 (436)
.+||||+- .|-|-..||-....-+.+.|+.||.|||||-+-.-.. ..+ -.|++-|+++.- +..-|||.
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~l----~~yhrvi~me~F 80 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGTV----AKYTRVVTMQEF 80 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHHH----TTTSCEECHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Ccccccchhheeecchh----hhhceeeeHHHH
Confidence 47999988 7999999999999999999999999999998753222 121 248888887753 33334441
Q ss_pred --cC-----Ccc-----------------------ccCCCCcc-------ccccCC--CCc----cch-----HHhhhh-
Q 013805 143 --EL-----PPE-----------------------ISSKEPFH-------VDCSKR--KGQ----FDY-----VESVLP- 173 (436)
Q Consensus 143 --~L-----P~~-----------------------~~~~~~~~-------~~~~~~--~s~----~~Y-----~~~vlp- 173 (436)
+| |.+ .+..+|+. |+..+. .++ ..| .++-..
T Consensus 81 m~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~ 160 (362)
T 3zy2_A 81 TKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEK 160 (362)
T ss_dssp HHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHH
T ss_pred HHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHh
Confidence 11 111 11122221 111000 011 111 111111
Q ss_pred -hhhcCceEEEcccccccccCChhhHhhHhHHHhhcccccchHHHHHHHHHHHh-cCCCeeEeecccchhhhhhcccccC
Q 013805 174 -ALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEPDMVAYSQCEYQ 251 (436)
Q Consensus 174 -~l~k~~vi~l~p~~~~~~~~~P~~~q~LRCrv~f~ALrF~~~I~~lg~~lv~R-m~g~yiAlHLR~E~DmlafsgC~~~ 251 (436)
.-.+|-|+.|...- ...|...+- |.-=+-|+++++|.+.|++.++. |.+||||+|||--.|+.-. |.+-
T Consensus 161 ~p~~~~pVlAf~gaP----a~FPv~~e~---r~LqkYm~WS~~i~~~a~~fI~~~L~rpyVgIHLR~G~DW~~a--C~hl 231 (362)
T 3zy2_A 161 FPSEEYPVLAFSSAP----APFPSKGKV---WSIQKYLRWSSRITEQAKKFISANLAKPFVAVHLRNDADWVRV--CEHI 231 (362)
T ss_dssp SCTTTCSEEEESSCS----SCSSCCGGG---GGGGGGCCBCHHHHHHHHHHHHHHCCSSEEEEEECCCHHHHHH--HHTC
T ss_pred CCcccCceEeecCCC----CCCCcChhh---HhHHHhccccHHHHHHHHHHHHHhcCCCeEEEEEecCCcHHHH--Hhhh
Confidence 11255677775321 112211000 11113599999999999998877 8899999999999999865 8741
Q ss_pred CCChhHHHHHHHHhcCCCCCCcch--hhhhhcCC-----CCCCCHHH----HHHHHHHcCCCCccEEEEeecCCchhhHH
Q 013805 252 GLSPTSMQAIEAARGDRKPWTGEV--AHIWRRRG-----KCPLTPNE----TALILQALSIPTNTNIYLAAGDGLMEIEG 320 (436)
Q Consensus 252 g~~~~e~e~l~~~R~~~~~w~~~~--~~~~R~~G-----~CPLtPeE----vgl~LralGf~~~T~IYlA~geg~~~l~~ 320 (436)
..+ + . ...-..- -.-....| .|==+.++ +...++.++ -..||||+-. ...++-
T Consensus 232 k~~-~-------~----~~lfaSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~---lksVFIATDa-~~~~~E 295 (362)
T 3zy2_A 232 DTT-T-------N----RPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIG---AKSVFVASDK-DHMIDE 295 (362)
T ss_dssp CTT-T-------C----CCCTTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHT---CSEEEEEESS-CCCHHH
T ss_pred ccc-c-------C----cccccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcC---CcEEEEecCC-HHHHHH
Confidence 110 0 0 0000000 00001111 23123333 344555555 4599999954 346788
Q ss_pred HHHhcccccccccCCChhhhccccCCcccceeeEEeecCceeeecCCCchHHHHHHHHhhcC
Q 013805 321 LTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKG 382 (436)
Q Consensus 321 L~~~FPnl~tKe~L~~~eEL~~~~s~~~AAlDyiVc~~SDvFv~t~~Gnfa~~V~GhR~y~G 382 (436)
|++.|+..-.+ +. .+.. -.|+||-+||.+||+||+|..++|+..|.-.|--.|
T Consensus 296 Lk~~L~~~~v~--vv------~~~p-e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 296 INEALKPYEIE--AH------RQEP-DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHHHHGGGTCC--EE------CCSS-CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHHHhhccCce--EE------EeCC-chhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 88888752111 10 0111 178999999999999999999999999999999988
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.40 E-value=0.0049 Score=60.37 Aligned_cols=263 Identities=12% Similarity=0.210 Sum_probs=127.8
Q ss_pred CCceEEEEecCChhhHHHHHHHHHHHHHhhcceeeccccccccccCCCCCCcccCcHHHHHHhccC--CcEEecc-CCcc
Q 013805 71 SNGYICVDCYGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDG--FVKVVKE-LPPE 147 (436)
Q Consensus 71 snGyl~v~~~GGLnq~R~~IcdaV~vAriLnATLViP~l~~~s~W~D~S~F~dIFD~dhFI~sL~~--dVrIvk~-LP~~ 147 (436)
+.+||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|- ...|.+.| .-.|. .... ...+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~--~~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYV--EQPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTC--SSTTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccC--CCCccccC-ccccc-chhhhcccceeccccccc
Confidence 5679999999999999999999999999999998876443 2331 23456666 22232 1110 0011110 0100
Q ss_pred ccCCCCccc-cccCCCCccch--HHhhhh------hhh---cC-ceEEEcccccccccCChhhHhhHhHHHhhcccccch
Q 013805 148 ISSKEPFHV-DCSKRKGQFDY--VESVLP------ALL---EH-KYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTR 214 (436)
Q Consensus 148 ~~~~~~~~~-~~~~~~s~~~Y--~~~vlp------~l~---k~-~vi~l~p~~~~~~~~~P~~~q~LRCrv~f~ALrF~~ 214 (436)
..-..+... -+....-...| .+++.| .+. .+ ....+.+..- + .+.+.|- .-..-|.-|++++
T Consensus 78 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~-~---~w~~~~~-~~~~i~~yl~p~~ 152 (330)
T 2hhc_A 78 LSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCDAC-L---MWRCSEE-AERLIFRNIKLRS 152 (330)
T ss_dssp CCCCSSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSC-C---TTSSCHH-HHHHHHHHSCBCH
T ss_pred ccCCCCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccc-c---ccchhhh-hHHHHHhcCCccH
Confidence 000000000 00000000001 122221 111 11 0012222000 0 0111111 1233457789999
Q ss_pred HHHHHHHHHHHh-cC-CCeeEeecccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcchhhhhhcCCCCCCCHHHH
Q 013805 215 SLQKKAAELLEA-IP-KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNET 292 (436)
Q Consensus 215 ~I~~lg~~lv~R-m~-g~yiAlHLR~E~DmlafsgC~~~g~~~~e~e~l~~~R~~~~~w~~~~~~~~R~~G~CPLtPeEv 292 (436)
+|++..++..+. +. .++||+|.|.=.+.- .|.+ +. .|.+. .|| -++.
T Consensus 153 ~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~~---~~~~-~~----------------~~~~~---------~~~--l~~~ 201 (330)
T 2hhc_A 153 EIRARIDALYEEHFSGHSIIGVHVRHGNGED---IMEH-AP----------------YWADS---------ELA--LHQV 201 (330)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEEECC--------------------------------CHHH---------HHH--HHHH
T ss_pred HHHHHHHHHHHHhccCCceEEEEEecCCCCc---cccc-Cc----------------chHHH---------hHH--HHHH
Confidence 999999998865 45 599999999653211 1221 10 01000 001 1111
Q ss_pred HHHHHHc-C-CC-CccEEEEeecCCchhhHHHHHhcccccccc-cCCC-h-hhhc----cccCCcccceeeEEeecCcee
Q 013805 293 ALILQAL-S-IP-TNTNIYLAAGDGLMEIEGLTSVYTNVVTKS-ALRT-G-EDFT----RMHGNTKAALDYYVSINSDSY 362 (436)
Q Consensus 293 gl~Lral-G-f~-~~T~IYlA~geg~~~l~~L~~~FPnl~tKe-~L~~-~-eEL~----~~~s~~~AAlDyiVc~~SDvF 362 (436)
-.-++.+ . .+ .+..||||+-+. ..++-|++.||++.+-. .+.. . ..+- ...+...+.+|.+..+++|.+
T Consensus 202 ~~~i~~~~~~~~~~~~~vfvaSDd~-~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~LLS~cd~~ 280 (330)
T 2hhc_A 202 CMAIRKAKALSYPKPVKVFLCTDSA-QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYLLARCATV 280 (330)
T ss_dssp HHHHHHHHTSCCSSCEEEEEEESCH-HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHhccCcCceEEEEEeCCH-HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHHHHcCCee
Confidence 1111111 1 12 467999998874 45778999999843321 1110 0 0000 011245688999999999999
Q ss_pred e-ecCCCchHHHHH
Q 013805 363 M-ATYFGNMDKMVA 375 (436)
Q Consensus 363 v-~t~~Gnfa~~V~ 375 (436)
| .+..++|+...+
T Consensus 281 I~~~~~STFs~~aa 294 (330)
T 2hhc_A 281 IRFPPTSAFTRYAR 294 (330)
T ss_dssp EEESTTCGGGHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 9 555888988777
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.38 E-value=0.014 Score=61.97 Aligned_cols=250 Identities=14% Similarity=0.134 Sum_probs=138.2
Q ss_pred CCceEEEEe--cCChhhHHHHHHHHHHHHHhhcceeeccccccccccCC-CCCCcccCcHHHHHHhccCCcEEeccCCcc
Q 013805 71 SNGYICVDC--YGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNE-SSDFADIFEADYFIQHMDGFVKVVKELPPE 147 (436)
Q Consensus 71 snGyl~v~~--~GGLnq~R~~IcdaV~vAriLnATLViP~l~~~s~W~D-~S~F~dIFD~dhFI~sL~~dVrIvk~LP~~ 147 (436)
+..||+... ..|+..+-..++=|..+|..+|.|||+-.=. |.- ...|+++|.. +...+... |..
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~~~ 210 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------SGI 210 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------CCS
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------Ccc
Confidence 457888876 5799999999999999999999999994422 332 2467888875 21111111 100
Q ss_pred ccCCCCccccccCCCCccchHHhhhhhhhcCceEEEcccc--ccc---c-cCChhh----HhhHh-------H-HHhhcc
Q 013805 148 ISSKEPFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAM--SQR---R-DRYPRF----AKAAL-------C-QACYSA 209 (436)
Q Consensus 148 ~~~~~~~~~~~~~~~s~~~Y~~~vlp~l~k~~vi~l~p~~--~~~---~-~~~P~~----~q~LR-------C-rv~f~A 209 (436)
..+.|+... . -..+.||...-.+ ++. . ..+|.. ++++. + .+.-.-
T Consensus 211 ------~~~~w~~~~---~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~yl 273 (526)
T 2de0_X 211 ------STGHWSGEV---K--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYL 273 (526)
T ss_dssp ------CCCBCCCTT---G--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ------ccCCCCCcc---c--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHHH
Confidence 001121110 0 0122222211000 000 0 022222 12221 1 111135
Q ss_pred cccchHHHHHHHHHHHhc--CCCeeEeecccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcchhhhhhcCCCCCC
Q 013805 210 LRLTRSLQKKAAELLEAI--PKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPL 287 (436)
Q Consensus 210 LrF~~~I~~lg~~lv~Rm--~g~yiAlHLR~E~DmlafsgC~~~g~~~~e~e~l~~~R~~~~~w~~~~~~~~R~~G~CPL 287 (436)
+|++++|++..+++.+.+ .+|.|++|.|-- |-...-. .+... .+..+.++
T Consensus 274 ~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~E~-~~~~~-~~Y~~~v~------------------------- 325 (526)
T 2de0_X 274 IRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGTEA-AFHPI-EEYMVHVE------------------------- 325 (526)
T ss_dssp TCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------CC-CSCSH-HHHHHHHH-------------------------
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCcccc-ccCCH-HHHHHHHH-------------------------
Confidence 899999999999999886 689999999953 3221100 01111 11111111
Q ss_pred CHHHHHHHHHHcCCCCccEEEEeecCCchhhHHHHHhcccc--cccccCCChhhhc-cc--cCCcccceeeEEeecCcee
Q 013805 288 TPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNV--VTKSALRTGEDFT-RM--HGNTKAALDYYVSINSDSY 362 (436)
Q Consensus 288 tPeEvgl~LralGf~~~T~IYlA~geg~~~l~~L~~~FPnl--~tKe~L~~~eEL~-~~--~s~~~AAlDyiVc~~SDvF 362 (436)
+.-..|+.......+.||||+-+ ...++-+++.||+. ++-........+. .. .+...+.+|.++.+++|+|
T Consensus 326 ---~~~~~l~~~~~~~~~~ifLATDD-p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~ 401 (526)
T 2de0_X 326 ---EHFQLLARRMQVDKKRVYLATDD-PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFL 401 (526)
T ss_dssp ---HHHHHHHTTSCCSSCEEEEEESC-HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEE
T ss_pred ---HHHHHHHhhcCCCCCeEEEEcCC-HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCee
Confidence 11112333356788999999876 34566778889985 3322221111111 11 1224678999999999999
Q ss_pred eecCCCchHHHHHHHHhhcC
Q 013805 363 MATYFGNMDKMVAAMRAFKG 382 (436)
Q Consensus 363 v~t~~Gnfa~~V~GhR~y~G 382 (436)
|+|.++||++++...|.-.+
T Consensus 402 Vgt~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 402 VCTFSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp EECTTSHHHHHHHHHHTTSS
T ss_pred ecCCCCHHHHHHHHHhcCcC
Confidence 99999999999988776444
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.00 E-value=3.1 Score=31.60 Aligned_cols=48 Identities=13% Similarity=0.341 Sum_probs=32.0
Q ss_pred chhhHHHHHhcccccccccCCChhhhccccCCcccceeeEEeecCceeeec
Q 013805 315 LMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMAT 365 (436)
Q Consensus 315 ~~~l~~L~~~FPnl~tKe~L~~~eEL~~~~s~~~AAlDyiVc~~SDvFv~t 365 (436)
+..++-|++|||++ +++.+- .-|....++..+|||-+.....+-|=|+
T Consensus 10 ee~l~~L~emFP~l-d~~~I~--~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIR--SVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH--HHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHCCCC-CHHHHH--HHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 56788999999985 333321 1234456778888888777776666554
No 6
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=24.11 E-value=71 Score=27.36 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCccEEEEeecC
Q 013805 283 GKCPLTPNETALILQALSIPTNTNIYLAAGD 313 (436)
Q Consensus 283 G~CPLtPeEvgl~LralGf~~~T~IYlA~ge 313 (436)
-.||||+||+...|+.+--+. ...||..+.
T Consensus 16 p~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~r 45 (118)
T 1l2m_A 16 PKCDLTKENALSQITNLQTPT-NKLFIKICR 45 (118)
T ss_dssp TTCCCCHHHHHHHHHHCCCSS-CEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhhcCCc-ceeeeeehh
Confidence 379999999999999988554 366766654
No 7
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=23.41 E-value=31 Score=29.48 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHcCCCCcc
Q 013805 287 LTPNETALILQALSIPTNT 305 (436)
Q Consensus 287 LtPeEvgl~LralGf~~~T 305 (436)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998654
No 8
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=21.38 E-value=51 Score=28.94 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=55.1
Q ss_pred eEeecccchhhhhhcccccCCCC-----hhHHHHHHHHhcCCCCCCcchhhhhhcCCCCC-CCHHHH-HHHHHHcCCCCc
Q 013805 232 LSLHLRFEPDMVAYSQCEYQGLS-----PTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP-LTPNET-ALILQALSIPTN 304 (436)
Q Consensus 232 iAlHLR~E~DmlafsgC~~~g~~-----~~e~e~l~~~R~~~~~w~~~~~~~~R~~G~CP-LtPeEv-gl~LralGf~~~ 304 (436)
|+--++.+.. -.|+||...+.+ -+|.-++.++-.. ..+.-+.--.....+. | ++|=-. -.+|..+| .+
T Consensus 38 VGAal~~~dG-~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~~-~~~~PCG~Crq~l~E~~--~~ 112 (146)
T 2fr5_A 38 VGAALLTGDG-RIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQE-EFISPCGACRQVMREFG--TD 112 (146)
T ss_dssp EEEEEEETTS-CEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCSS-SCCCCCHHHHHHHHHTC--SS
T ss_pred EEEEEEeCCC-cEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCCC-cccCCCHHHHHHHHHhC--CC
Confidence 6667777655 556788753322 2444444443321 2221110000011111 3 444333 35777777 78
Q ss_pred cEEEEeecCCchhhHHHHHhcccccccccC
Q 013805 305 TNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 334 (436)
Q Consensus 305 T~IYlA~geg~~~l~~L~~~FPnl~tKe~L 334 (436)
+.||++..+|.....+|.++.|.-+++++|
T Consensus 113 ~~v~~~~~~g~~~~~~l~eLLP~~F~~~~l 142 (146)
T 2fr5_A 113 WAVYMTKPDGTFVVRTVQELLPASFGPEDL 142 (146)
T ss_dssp CEEEEECTTSCEEEEEHHHHSTTCCCGGGG
T ss_pred CEEEEECCCCCEEEEEHHHhCCCCCChHHH
Confidence 999999888765556899999998888776
No 9
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=15.99 E-value=1.2e+02 Score=19.94 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=15.4
Q ss_pred ccccchhHHHHHHHHHHHHHHH
Q 013805 3 KLTVKPVFVSIILGLSLFLAVV 24 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (436)
++.+..++|| +.+|+-|.+.+
T Consensus 2 khtiweviag-lvalltflafg 22 (32)
T 2lx0_A 2 KHTIWEVIAG-LVALLTFLAFG 22 (32)
T ss_dssp CSSSHHHHHH-HHHHHHHHHHH
T ss_pred cchHHHHHHH-HHHHHHHHHHH
Confidence 5678889999 66666666654
No 10
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=15.89 E-value=74 Score=27.78 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=52.4
Q ss_pred eeEeecccchhhhhhcccccCCC-----ChhHHHHHHHHhcC-CCCCCcchhhhhhcCCCCCCCHHHH-HHHHHHcCCCC
Q 013805 231 FLSLHLRFEPDMVAYSQCEYQGL-----SPTSMQAIEAARGD-RKPWTGEVAHIWRRRGKCPLTPNET-ALILQALSIPT 303 (436)
Q Consensus 231 yiAlHLR~E~DmlafsgC~~~g~-----~~~e~e~l~~~R~~-~~~w~~~~~~~~R~~G~CPLtPeEv-gl~LralGf~~ 303 (436)
-|+.=++.+.. -.|+||...+. -=+|.-++.++-.. ......-. .....+. |++|=-+ -.+|..++ +.
T Consensus 34 ~VGAAll~~dG-~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G~~~~~aia--v~~~~~~-~~~PCG~CRQ~l~E~~-~~ 108 (141)
T 2d30_A 34 QVGAALLTQDG-KVYRGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIA--IVADTKR-PVPPCGACRQVMVELC-KQ 108 (141)
T ss_dssp CEEEEEEETTC-CEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEE--EEESCSS-CCCCCHHHHHHHHHHS-CT
T ss_pred cEEEEEEeCCC-CEEEeeccccCCCCcccCHHHHHHHHHHHCCCCceEEEE--EEeCCCC-ccCcCHHHHHHHHHhc-CC
Confidence 37888888755 67788884321 12455555444321 11111100 0011111 4555443 45667764 36
Q ss_pred ccEEEEeecCCchhhHHHHHhcccccccccC
Q 013805 304 NTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 334 (436)
Q Consensus 304 ~T~IYlA~geg~~~l~~L~~~FPnl~tKe~L 334 (436)
++.||++..+|.....+|.++.|.-+++++|
T Consensus 109 ~~~V~~~~~~g~~~~~~l~eLLP~~F~~~~l 139 (141)
T 2d30_A 109 DTKVYLSNLHGDVQETTVGELLPGAFLAEDL 139 (141)
T ss_dssp TCEEEEECSSSCEEEEEHHHHSTTC------
T ss_pred CeEEEEECCCCCEEEEEHHHhCCCCCChhhc
Confidence 8999999888765567899999998888776
Done!