Query 013805
Match_columns 436
No_of_seqs 171 out of 423
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 17:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013805.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013805hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 48.5 0.59 4.3E-05 34.0 -2.6 51 312-365 7-57 (59)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 38.1 12 0.00089 30.1 3.7 29 284-313 17-45 (118)
3 d2ihoa2 d.3.1.18 (A:156-293) A 31.8 3.7 0.00027 33.7 -0.6 36 103-138 31-71 (138)
4 d2g7ja1 d.198.5.1 (A:1-112) Pu 24.8 15 0.0011 29.0 1.9 19 287-305 3-21 (112)
5 d2fr5a1 c.97.1.1 (A:11-146) mo 22.1 18 0.0013 29.2 2.1 40 294-335 94-133 (136)
6 d1f54a_ a.39.1.5 (A:) Calmodul 21.3 40 0.0029 23.5 3.7 16 287-302 27-42 (77)
7 d1vjna_ d.157.1.4 (A:) Hypothe 20.0 60 0.0044 27.1 5.2 43 89-136 142-184 (209)
8 d1uwza_ c.97.1.1 (A:) mono-dom 19.3 29 0.0021 27.7 2.7 40 294-334 91-130 (130)
9 d1oqya2 a.5.2.1 (A:317-360) DN 19.1 6.9 0.0005 26.6 -1.1 27 288-314 1-31 (44)
10 d2nyga1 c.140.1.2 (A:2-271) Un 16.7 51 0.0037 29.4 4.1 54 70-129 27-104 (270)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.51 E-value=0.59 Score=34.01 Aligned_cols=51 Identities=14% Similarity=0.346 Sum_probs=33.0
Q ss_pred cCCchhhHHHHHhcccccccccCCChhhhccccCCcccceeeEEeecCceeeec
Q 013805 312 GDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMAT 365 (436)
Q Consensus 312 geg~~~l~~L~~~FPnl~tKe~L~~~eEL~~~~s~~~AAlDyiVc~~SDvFv~t 365 (436)
|..+..+..|++|||++ +++.+- .=|....++..+|+|=+.-..-+.|-|+
T Consensus 7 ~~~Ee~i~~LkeMFP~~-D~~vI~--~VL~a~~G~vd~aid~LL~Msd~~~gp~ 57 (59)
T d1wgla_ 7 GCSEEDLKAIQDMFPNM-DQEVIR--SVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp SSCHHHHHHHHHHCSSS-CHHHHH--HHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCcHHHHHHHHHHCCCC-CHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCcCCC
Confidence 34567799999999996 333321 1244456777788877666666666554
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=38.15 E-value=12 Score=30.15 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHcCCCCccEEEEeecC
Q 013805 284 KCPLTPNETALILQALSIPTNTNIYLAAGD 313 (436)
Q Consensus 284 ~CPLtPeEvgl~LralGf~~~T~IYlA~ge 313 (436)
+|||||||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999998765554 5666554
No 3
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=31.81 E-value=3.7 Score=33.66 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=29.9
Q ss_pred eeeccccccccccCCC-----CCCcccCcHHHHHHhccCCc
Q 013805 103 TLVLPKFEVAAYWNES-----SDFADIFEADYFIQHMDGFV 138 (436)
Q Consensus 103 TLViP~l~~~s~W~D~-----S~F~dIFD~dhFI~sL~~dV 138 (436)
-||+|.-.-+++|+++ .-=+.|||-|.|--..+.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 4999999999999985 35578999999988776554
No 4
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=24.83 E-value=15 Score=28.95 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHcCCCCcc
Q 013805 287 LTPNETALILQALSIPTNT 305 (436)
Q Consensus 287 LtPeEvgl~LralGf~~~T 305 (436)
|-|.||+.+|+..||..+.
T Consensus 3 LRPDEVArVLe~aGF~~d~ 21 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVDV 21 (112)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998543
No 5
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.12 E-value=18 Score=29.22 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=31.9
Q ss_pred HHHHHcCCCCccEEEEeecCCchhhHHHHHhcccccccccCC
Q 013805 294 LILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALR 335 (436)
Q Consensus 294 l~LralGf~~~T~IYlA~geg~~~l~~L~~~FPnl~tKe~L~ 335 (436)
.+|..+ ..++.||+...+|+.....|+++.|.-+++++|-
T Consensus 94 Q~l~E~--~~~~~i~~~~~~~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 94 QVMREF--GTDWAVYMTKPDGTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp HHHHHT--CSSCEEEEECTTSCEEEEEHHHHSTTCCCGGGGT
T ss_pred HHHHhh--CCCceEEEECCCCCEEEeEHHHhCcCCCChHHhC
Confidence 455664 5789999998887766778999999999888874
No 6
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.33 E-value=40 Score=23.48 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHcCCC
Q 013805 287 LTPNETALILQALSIP 302 (436)
Q Consensus 287 LtPeEvgl~LralGf~ 302 (436)
++++|+..+|+.+|+.
T Consensus 27 I~~~el~~~l~~~g~~ 42 (77)
T d1f54a_ 27 ISSSELATVMRSLGLS 42 (77)
T ss_dssp EEHHHHHHHHHHHTCC
T ss_pred EChHHHHHHHHHhCCC
Confidence 5666666666666655
No 7
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=20.04 E-value=60 Score=27.15 Aligned_cols=43 Identities=28% Similarity=0.481 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcceeeccccccccccCCCCCCcccCcHHHHHHhccC
Q 013805 89 DFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDG 136 (436)
Q Consensus 89 ~IcdaV~vAriLnATLViP~l~~~s~W~D~S~F~dIFD~dhFI~sL~~ 136 (436)
.--+|+.+|+.|++-.|||- .|+.....| ++=.+|.|++.++.
T Consensus 142 ~~~ea~~~~~~l~pk~viP~----H~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 142 GPKEAKEVADLLNAKVIIPM----HYKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp CHHHHHHHHHHTTCSEEEEE----SCCCSSCCT-TCCCTHHHHTTSSC
T ss_pred CHHHHHHHHHHhCCCEEEEe----ccCCccccc-CcCCHHHHHHHhhh
Confidence 45689999999999999995 232222233 45567888887763
No 8
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=19.34 E-value=29 Score=27.70 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHcCCCCccEEEEeecCCchhhHHHHHhcccccccccC
Q 013805 294 LILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSAL 334 (436)
Q Consensus 294 l~LralGf~~~T~IYlA~geg~~~l~~L~~~FPnl~tKe~L 334 (436)
.+|..++ +.++.||+...+|+.....|+++.|.=+++++|
T Consensus 91 Q~l~E~~-~~~~~i~l~~~~g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 91 QVISELC-TKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp HHHHHHS-CTTCEEEEECSSSCEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHHhC-CCCcEEEEECCCCCEEEEEHHHhCcCCCCcccC
Confidence 4555553 468999999988754445799999998888876
No 9
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.11 E-value=6.9 Score=26.59 Aligned_cols=27 Identities=33% Similarity=0.488 Sum_probs=18.9
Q ss_pred CHHHHH--HHHHHcCCCCccE--EEEeecCC
Q 013805 288 TPNETA--LILQALSIPTNTN--IYLAAGDG 314 (436)
Q Consensus 288 tPeEvg--l~LralGf~~~T~--IYlA~geg 314 (436)
||+|.. .=|.+|||+++.. +|+|-.+.
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdKN 31 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEKN 31 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSSC
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCcC
Confidence 444443 3378999999984 68887764
No 10
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus subtilis [TaxId: 1423]}
Probab=16.72 E-value=51 Score=29.38 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=0.0
Q ss_pred CCCceEEEEec--------CChhhHHHHHHHHHHHHHhhcceeeccccccccccCCCCCCcc----------------cC
Q 013805 70 KSNGYICVDCY--------GGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFAD----------------IF 125 (436)
Q Consensus 70 ~snGyl~v~~~--------GGLnq~R~~IcdaV~vAriLnATLViP~l~~~s~W~D~S~F~d----------------IF 125 (436)
+...-|+|+++ ||+...-.++-|.| =-++|||||.+-.+.. |+..+.. +|
T Consensus 27 ~kgd~v~vHssl~~lg~~~~~~~~~i~aL~~~v----G~~GTLvmPtft~~~~--~~~~~~~~~~~~~~~~~~r~~~p~F 100 (270)
T d2nyga1 27 KKGMTVLVHSSLSSIGWVNGGAVAVIQALIDVV----TEEGTIVMPSQSVELS--DPKEWGNPPVPEEWWDIIRESMPAY 100 (270)
T ss_dssp CTTCEEEEEECSGGGCCBTTHHHHHHHHHHHHH----TTTSEEEEECCCTTSS--CGGGCCSSCCCGGGTTHHHHSCCCC
T ss_pred CCcCEEEEEcChHHhCCcCCCHHHHHHHHHHHh----CCCceEEEEecccCCC--ChhhhcCCCCcHHHHHHHHhcCCCc
Q ss_pred cHHH
Q 013805 126 EADY 129 (436)
Q Consensus 126 D~dh 129 (436)
|.++
T Consensus 101 d~~~ 104 (270)
T d2nyga1 101 NSNY 104 (270)
T ss_dssp CTTT
T ss_pred Cccc
Done!