Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>013807
MASLQTSWLSSVSTIKNKNDSSAKQKPKLSSLKLSFFLNATSNNDEASEQPISENSPEPE
ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVARAAVEKAKEYKKNKDTVSFQNGT
NSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDT
PEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKTFGGGRTIRP
GDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEAL
PFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFM
FSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEAGSEEGALTQALPYMIFLASP
IFVILLIAVQRGSINF

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  013807
        (436 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2040369 - symbol:AT2G38780 "AT2G38780" species...  1058  5.7e-107  1


>TAIR|locus:2040369 [details] [associations]
            symbol:AT2G38780 "AT2G38780" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002685 UniGene:At.47584 IPI:IPI00539586
            RefSeq:NP_181412.2 UniGene:At.37249 UniGene:At.66375 PRIDE:F4ITX5
            EnsemblPlants:AT2G38780.1 GeneID:818460 KEGG:ath:AT2G38780
            OMA:ARQFMFS Uniprot:F4ITX5
        Length = 465

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 237/444 (53%), Positives = 290/444 (65%)

Query:     1 MASLQTSWLSSVSTIKNKNDXXXXXXXXXXXXXXXXXXNATSNNDEASEQPISENSPEPE 60
             MAS   SWLSS  T   +                       SN    S  P  + S E E
Sbjct:    31 MASFNHSWLSSPLT---ETPAFFFSPSQHPKSLKLSLFRTRSN----SSSP--DRSSEVE 81

Query:    61 ASLDPVKLAFEKAKAYRKLKESNSDSKYEQNP-DKDV---ARAAVEKAKEYKKNK----D 112
               +DPVKLA +KA+AY+K K  +   K E+N  D+++    +AA++KA +YKK K    D
Sbjct:    82 LDVDPVKLALKKAEAYKKSK--SEQKKPEKNAGDEELPLSVKAAMQKANDYKKRKGLGTD 139

Query:   113 TVSFQNGTNSGFKGEGRGNLPKEVGG-KKEGLKISSIDFMGLNFADKKEGKGLPAGLVPV 171
              V+    +N+        N   E    KK+ LK+SSIDFMGL FADKK  +GLPAGLVPV
Sbjct:   140 AVAKAKPSNTDQSFVRLANKVVEDNDVKKKELKVSSIDFMGLGFADKKSTRGLPAGLVPV 199

Query:   172 TDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRPGNISKT 231
              D   EGD PEVE IVGD ++F E  V     + + N + YKPKVSTWGVFPRP NISKT
Sbjct:   200 VDYLPEGDLPEVEFIVGDKTRFAEK-VKEVEQEGDGNSDVYKPKVSTWGVFPRPSNISKT 258

Query:   232 FGGGRTIRPGDVLXXXXXXXXXXXXXXQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLM 291
             FGGGRT+RPGD +              +LL AYK+S+GLN+DPKLK ECEKA+ +G+SLM
Sbjct:   259 FGGGRTLRPGDSVETAEERIVREEKTKKLLIAYKESLGLNIDPKLKLECEKAIDEGNSLM 318

Query:   292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 351
             DSGKLKEALP+YEKVM K+VFKSELHGLAALQWSICQDSL +  +AR MYEKL SHPN  
Sbjct:   319 DSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQDSLRKTDKARRMYEKLISHPNPG 378

Query:   352 VSKRARQFMFSFQAMEMMKVRSSS--DKNTDYRNFFEAFVEDKTNYPLQEAGS-EEGALT 408
             VSK+ARQFMFSFQAMEM+KV+ SS  + NT Y+++FEAFVEDKTNY  QE    EE  + 
Sbjct:   379 VSKKARQFMFSFQAMEMLKVKGSSFAEGNTGYQDYFEAFVEDKTNYKAQEEKEGEEMGIN 438

Query:   409 QALPYMIFLASPIFVILLIAVQRG 432
             + L Y+I LASPI ++ ++A QRG
Sbjct:   439 ETLLYVILLASPILMVFIVAAQRG 462


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.130   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      436       404   0.00099  117 3  11 23  0.48    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  237 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  41.27u 0.08s 41.35t   Elapsed:  00:00:25
  Total cpu time:  41.27u 0.08s 41.35t   Elapsed:  00:00:25
  Start:  Mon May 20 14:53:56 2013   End:  Mon May 20 14:54:21 2013

Back to top