BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013807
         (436 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P47418|AMPM_MYCGE Methionine aminopeptidase OS=Mycoplasma genitalium (strain ATCC
           33530 / G-37 / NCTC 10195) GN=map PE=3 SV=1
          Length = 248

 Score = 35.0 bits (79), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 115 SFQNGTNSGFKGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDP 174
           +  N   + F+ +G   L KE GG   G+KI   D + LN+ +K +G  L  G+V   +P
Sbjct: 146 NLSNAIQTYFENKGYF-LVKEFGGHGCGIKIHE-DPLILNWGEKNQGVRLQEGMVICIEP 203

Query: 175 FAEGDTPEVEI 185
               D+ E+ +
Sbjct: 204 MVMTDSSEITM 214


>sp|B0THN3|ATPG_HELMI ATP synthase gamma chain OS=Heliobacterium modesticaldum (strain
           ATCC 51547 / Ice1) GN=atpG PE=3 SV=1
          Length = 290

 Score = 34.7 bits (78), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 39  NATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVAR 98
           +A S  D    QP+    P PEA LD +   + + + YR L ES +    EQ        
Sbjct: 194 SANSAKDSKGPQPLYAFEPSPEAVLDELLPKYVENQIYRALLESKAS---EQGARMTAMG 250

Query: 99  AAVEKAKEYKKNKDTVSFQNGTNSGFKGEGRGNLPKEVGG 138
           +A + AKE   NK T+SF     +    E    + + VGG
Sbjct: 251 SATDNAKEM-INKLTLSFNRARQAAITKE----ISEVVGG 285


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.129    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,390,995
Number of Sequences: 539616
Number of extensions: 7429120
Number of successful extensions: 18527
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 18196
Number of HSP's gapped (non-prelim): 308
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)