Query 013807
Match_columns 436
No_of_seqs 68 out of 70
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13432 TPR_16: Tetratricopep 98.2 8.3E-06 1.8E-10 60.5 7.0 62 284-349 1-63 (65)
2 PF14559 TPR_19: Tetratricopep 98.0 2.1E-05 4.5E-10 58.3 6.8 60 290-353 1-62 (68)
3 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00012 2.6E-09 57.6 9.3 77 280-357 39-116 (119)
4 PF13525 YfiO: Outer membrane 97.8 0.00011 2.4E-09 67.2 9.5 77 279-356 4-81 (203)
5 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00018 4E-09 56.6 9.2 69 280-349 2-71 (119)
6 PF13414 TPR_11: TPR repeat; P 97.6 0.00016 3.6E-09 53.8 6.3 62 280-345 3-65 (69)
7 PRK10803 tol-pal system protei 97.6 0.00036 7.8E-09 67.7 10.1 102 256-360 158-260 (263)
8 PF13512 TPR_18: Tetratricopep 97.5 0.00048 1E-08 62.6 8.2 71 280-351 10-81 (142)
9 PF13424 TPR_12: Tetratricopep 97.4 0.00063 1.4E-08 52.0 6.8 65 280-344 5-72 (78)
10 PF09976 TPR_21: Tetratricopep 97.3 0.0041 8.9E-08 53.5 11.7 73 276-349 44-116 (145)
11 PRK10866 outer membrane biogen 97.3 0.00096 2.1E-08 63.6 8.3 72 279-351 31-103 (243)
12 PF12688 TPR_5: Tetratrico pep 97.2 0.0015 3.3E-08 57.0 8.3 74 283-357 4-78 (120)
13 TIGR02552 LcrH_SycD type III s 97.2 0.0028 6E-08 52.1 9.0 77 282-362 53-134 (135)
14 TIGR03302 OM_YfiO outer membra 97.2 0.0014 3E-08 59.1 7.6 77 274-351 27-104 (235)
15 PF13371 TPR_9: Tetratricopept 97.1 0.0027 5.7E-08 47.7 7.6 70 287-360 2-72 (73)
16 PRK15359 type III secretion sy 97.1 0.0053 1.1E-07 53.5 10.1 99 253-360 36-139 (144)
17 cd00189 TPR Tetratricopeptide 97.0 0.0023 4.9E-08 44.8 6.0 64 283-350 3-67 (100)
18 TIGR03302 OM_YfiO outer membra 97.0 0.007 1.5E-07 54.5 10.7 65 283-348 169-234 (235)
19 cd00189 TPR Tetratricopeptide 96.9 0.01 2.2E-07 41.5 8.4 64 281-348 35-99 (100)
20 PF12895 Apc3: Anaphase-promot 96.8 0.0027 5.9E-08 49.7 5.0 50 293-344 2-51 (84)
21 PF12688 TPR_5: Tetratrico pep 96.7 0.015 3.2E-07 50.9 9.4 85 258-345 18-102 (120)
22 KOG2376 Signal recognition par 96.6 0.0064 1.4E-07 66.2 8.5 82 270-351 164-257 (652)
23 PLN03088 SGT1, suppressor of 96.6 0.014 3E-07 58.4 10.1 105 246-359 7-113 (356)
24 PLN03088 SGT1, suppressor of 96.6 0.011 2.4E-07 59.0 9.2 64 281-348 3-67 (356)
25 PF03704 BTAD: Bacterial trans 96.6 0.047 1E-06 46.4 11.6 106 251-360 23-146 (146)
26 PRK15359 type III secretion sy 96.5 0.0059 1.3E-07 53.2 6.0 63 283-349 27-90 (144)
27 PF09976 TPR_21: Tetratricopep 96.5 0.02 4.3E-07 49.3 8.7 82 255-343 62-143 (145)
28 PF12895 Apc3: Anaphase-promot 96.4 0.0062 1.4E-07 47.6 5.1 60 279-343 24-83 (84)
29 CHL00033 ycf3 photosystem I as 96.4 0.023 5E-07 49.6 8.9 74 276-350 31-105 (168)
30 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.059 1.3E-06 57.2 13.0 67 280-347 75-141 (453)
31 cd05804 StaR_like StaR_like; a 96.3 0.04 8.6E-07 52.2 10.7 65 281-345 149-213 (355)
32 KOG0553 TPR repeat-containing 96.2 0.038 8.3E-07 56.0 10.6 81 275-355 76-187 (304)
33 PF13174 TPR_6: Tetratricopept 96.2 0.0059 1.3E-07 39.5 3.2 31 319-349 1-32 (33)
34 PRK02603 photosystem I assembl 96.2 0.061 1.3E-06 47.4 10.4 72 278-350 33-105 (172)
35 TIGR02552 LcrH_SycD type III s 96.2 0.046 1E-06 44.9 9.1 72 271-349 11-83 (135)
36 PRK10803 tol-pal system protei 96.1 0.029 6.3E-07 54.7 9.1 75 281-356 143-219 (263)
37 PRK15179 Vi polysaccharide bio 96.1 0.016 3.5E-07 63.6 7.8 70 280-349 86-186 (694)
38 TIGR00990 3a0801s09 mitochondr 96.1 0.02 4.3E-07 60.0 8.2 59 283-345 163-221 (615)
39 PRK10370 formate-dependent nit 96.1 0.065 1.4E-06 49.5 10.5 82 258-348 56-141 (198)
40 TIGR02521 type_IV_pilW type IV 96.0 0.088 1.9E-06 44.4 10.1 84 256-348 46-129 (234)
41 PRK15179 Vi polysaccharide bio 96.0 0.044 9.5E-07 60.3 10.5 101 252-361 131-231 (694)
42 TIGR02917 PEP_TPR_lipo putativ 95.6 0.1 2.2E-06 53.0 10.7 86 256-351 718-804 (899)
43 TIGR02521 type_IV_pilW type IV 95.6 0.12 2.6E-06 43.5 9.4 62 281-346 136-197 (234)
44 PRK15363 pathogenicity island 95.5 0.04 8.6E-07 51.1 6.8 65 277-345 32-96 (157)
45 PRK11788 tetratricopeptide rep 95.5 0.071 1.5E-06 51.0 8.7 67 283-349 72-139 (389)
46 TIGR00990 3a0801s09 mitochondr 95.5 0.062 1.4E-06 56.4 8.8 63 283-349 402-465 (615)
47 PRK10866 outer membrane biogen 95.4 0.31 6.8E-06 46.6 12.7 142 255-399 46-209 (243)
48 PF14938 SNAP: Soluble NSF att 95.3 0.056 1.2E-06 51.8 7.2 81 280-360 114-199 (282)
49 PRK11788 tetratricopeptide rep 95.3 0.31 6.8E-06 46.7 12.2 63 283-349 183-246 (389)
50 PRK11189 lipoprotein NlpI; Pro 95.0 0.17 3.7E-06 48.9 9.8 84 259-351 82-166 (296)
51 PRK15174 Vi polysaccharide exp 95.0 0.13 2.9E-06 55.4 9.8 65 282-350 286-351 (656)
52 PRK12370 invasion protein regu 94.9 0.13 2.9E-06 53.9 9.4 61 285-349 343-404 (553)
53 TIGR02917 PEP_TPR_lipo putativ 94.8 0.11 2.3E-06 52.9 8.0 61 281-345 23-83 (899)
54 PRK10747 putative protoheme IX 94.7 0.091 2E-06 52.8 7.3 58 282-344 330-387 (398)
55 PF13429 TPR_15: Tetratricopep 94.7 0.089 1.9E-06 49.3 6.8 99 252-359 157-257 (280)
56 TIGR03504 FimV_Cterm FimV C-te 94.5 0.085 1.9E-06 39.5 4.8 41 321-361 2-42 (44)
57 PF13429 TPR_15: Tetratricopep 94.4 0.27 5.8E-06 46.1 9.2 102 252-363 124-227 (280)
58 PRK10153 DNA-binding transcrip 94.4 0.34 7.4E-06 51.6 11.0 70 287-361 427-497 (517)
59 CHL00033 ycf3 photosystem I as 94.3 0.3 6.6E-06 42.7 8.8 82 255-342 49-137 (168)
60 PRK12370 invasion protein regu 94.3 0.56 1.2E-05 49.3 12.1 84 253-345 350-433 (553)
61 COG3118 Thioredoxin domain-con 94.3 0.19 4.2E-06 51.1 8.3 63 279-345 133-195 (304)
62 PF13428 TPR_14: Tetratricopep 94.0 0.097 2.1E-06 37.2 4.1 32 319-350 2-34 (44)
63 PRK11447 cellulose synthase su 94.0 0.41 8.8E-06 54.7 11.1 65 282-350 353-418 (1157)
64 PF13525 YfiO: Outer membrane 93.9 0.55 1.2E-05 43.1 10.0 109 274-383 36-159 (203)
65 COG1729 Uncharacterized protei 93.9 0.49 1.1E-05 47.2 10.2 81 279-360 177-258 (262)
66 PRK02603 photosystem I assembl 93.8 0.46 9.9E-06 41.9 8.9 75 256-336 50-124 (172)
67 PRK11447 cellulose synthase su 93.6 0.39 8.5E-06 54.8 10.1 64 284-351 465-529 (1157)
68 KOG0543 FKBP-type peptidyl-pro 93.5 0.24 5.2E-06 52.0 7.5 76 278-353 206-292 (397)
69 PF07719 TPR_2: Tetratricopept 93.4 0.18 3.9E-06 32.8 4.3 31 281-311 2-32 (34)
70 PRK15331 chaperone protein Sic 93.3 0.22 4.7E-06 46.7 6.2 64 277-344 34-97 (165)
71 PRK09782 bacteriophage N4 rece 92.8 0.68 1.5E-05 53.1 10.5 59 287-349 650-709 (987)
72 PRK10049 pgaA outer membrane p 92.6 0.54 1.2E-05 51.5 9.0 66 281-350 360-426 (765)
73 KOG0547 Translocase of outer m 92.5 0.25 5.5E-06 53.6 6.3 106 281-391 116-264 (606)
74 PF14938 SNAP: Soluble NSF att 92.4 0.29 6.2E-06 47.0 5.9 89 257-345 51-142 (282)
75 cd05804 StaR_like StaR_like; a 92.3 0.45 9.8E-06 45.2 7.1 61 282-346 116-176 (355)
76 PRK10049 pgaA outer membrane p 92.1 0.96 2.1E-05 49.6 10.2 91 252-352 60-151 (765)
77 PRK11189 lipoprotein NlpI; Pro 91.8 1.6 3.5E-05 42.2 10.4 70 278-351 62-132 (296)
78 PF10602 RPN7: 26S proteasome 91.8 0.87 1.9E-05 41.9 8.2 91 246-346 8-101 (177)
79 KOG4234 TPR repeat-containing 91.8 0.74 1.6E-05 45.8 7.9 74 278-351 93-202 (271)
80 TIGR00540 hemY_coli hemY prote 91.6 0.59 1.3E-05 47.0 7.4 59 280-343 335-395 (409)
81 COG3063 PilF Tfp pilus assembl 91.6 1 2.2E-05 44.9 8.8 72 277-352 32-105 (250)
82 PRK15174 Vi polysaccharide exp 91.5 1 2.2E-05 48.8 9.5 87 256-351 227-318 (656)
83 KOG1840 Kinesin light chain [C 91.5 0.85 1.8E-05 49.1 8.8 60 285-344 246-309 (508)
84 COG4105 ComL DNA uptake lipopr 91.1 1 2.3E-05 44.9 8.3 69 279-348 33-102 (254)
85 COG5010 TadD Flp pilus assembl 91.0 0.51 1.1E-05 47.1 6.1 56 286-345 106-161 (257)
86 PF00515 TPR_1: Tetratricopept 91.0 0.46 1E-05 31.3 4.1 31 281-311 2-32 (34)
87 PRK09782 bacteriophage N4 rece 90.6 1.2 2.5E-05 51.3 9.3 62 279-344 43-104 (987)
88 KOG1840 Kinesin light chain [C 90.6 1.5 3.2E-05 47.4 9.5 67 278-344 281-351 (508)
89 PF11817 Foie-gras_1: Foie gra 89.8 2.1 4.6E-05 40.9 9.0 87 255-347 159-247 (247)
90 PRK14574 hmsH outer membrane p 89.7 1.8 4E-05 48.9 9.7 106 286-398 108-223 (822)
91 KOG4648 Uncharacterized conser 89.6 2.1 4.7E-05 45.5 9.5 106 267-372 81-221 (536)
92 PF13174 TPR_6: Tetratricopept 88.8 0.62 1.4E-05 29.9 3.3 30 282-311 2-31 (33)
93 KOG0550 Molecular chaperone (D 88.7 0.94 2E-05 48.5 6.2 131 266-396 226-409 (486)
94 PF13181 TPR_8: Tetratricopept 88.4 0.88 1.9E-05 29.8 3.9 31 281-311 2-32 (34)
95 PRK10747 putative protoheme IX 87.9 1.3 2.8E-05 44.7 6.5 58 286-347 159-216 (398)
96 COG1729 Uncharacterized protei 87.6 2.1 4.5E-05 42.9 7.6 66 283-349 144-210 (262)
97 KOG0543 FKBP-type peptidyl-pro 87.4 1.2 2.7E-05 46.9 6.1 56 286-345 263-318 (397)
98 KOG0548 Molecular co-chaperone 87.2 3.5 7.6E-05 45.0 9.5 73 271-350 352-425 (539)
99 COG2956 Predicted N-acetylgluc 86.8 1.5 3.2E-05 46.0 6.2 59 283-344 217-275 (389)
100 PF12862 Apc5: Anaphase-promot 86.7 2.4 5.1E-05 34.8 6.2 57 289-345 7-68 (94)
101 COG4700 Uncharacterized protei 86.5 1.9 4.1E-05 42.6 6.5 66 279-349 88-156 (251)
102 PF13414 TPR_11: TPR repeat; P 86.0 2 4.3E-05 31.8 5.1 55 251-310 13-68 (69)
103 PF13176 TPR_7: Tetratricopept 85.8 1.1 2.4E-05 30.8 3.3 24 285-308 4-27 (36)
104 PRK15363 pathogenicity island 85.8 3.7 8.1E-05 38.3 7.7 76 284-363 73-153 (157)
105 PF03704 BTAD: Bacterial trans 85.8 7.5 0.00016 33.0 9.1 75 278-353 4-98 (146)
106 PF03745 DUF309: Domain of unk 85.6 1.9 4.1E-05 34.2 4.9 60 282-341 1-62 (62)
107 PRK14574 hmsH outer membrane p 84.9 3.8 8.2E-05 46.5 8.7 91 251-350 44-135 (822)
108 TIGR00540 hemY_coli hemY prote 84.7 7.4 0.00016 39.3 9.9 71 286-359 124-196 (409)
109 PF13432 TPR_16: Tetratricopep 84.4 4.9 0.00011 29.6 6.5 55 253-312 9-63 (65)
110 KOG2076 RNA polymerase III tra 84.4 2.6 5.7E-05 48.3 7.1 65 277-344 411-475 (895)
111 PF13374 TPR_10: Tetratricopep 84.0 2.1 4.6E-05 28.4 4.0 25 284-308 6-30 (42)
112 PF13424 TPR_12: Tetratricopep 82.2 3.2 6.8E-05 31.6 4.8 34 277-310 43-76 (78)
113 PF12968 DUF3856: Domain of Un 82.1 5.7 0.00012 36.9 7.1 95 247-343 15-125 (144)
114 PF13176 TPR_7: Tetratricopept 81.5 2.4 5.1E-05 29.2 3.5 22 322-343 3-24 (36)
115 PF13428 TPR_14: Tetratricopep 81.5 2.2 4.7E-05 30.3 3.5 34 282-315 3-36 (44)
116 COG0457 NrfG FOG: TPR repeat [ 80.9 16 0.00034 28.3 8.3 55 289-345 139-194 (291)
117 PF13374 TPR_10: Tetratricopep 80.7 3.1 6.8E-05 27.6 3.9 25 320-344 4-28 (42)
118 PF07719 TPR_2: Tetratricopept 80.2 3.9 8.3E-05 26.4 4.1 31 319-349 2-33 (34)
119 KOG2076 RNA polymerase III tra 79.6 2.9 6.4E-05 47.9 5.4 59 283-345 452-510 (895)
120 KOG1126 DNA-binding cell divis 79.5 7.7 0.00017 43.3 8.3 95 261-364 475-571 (638)
121 PF12569 NARP1: NMDA receptor- 79.5 7.2 0.00016 42.1 8.0 64 283-350 7-71 (517)
122 PF09613 HrpB1_HrpK: Bacterial 79.4 32 0.0007 32.4 11.3 96 255-362 27-122 (160)
123 PF10579 Rapsyn_N: Rapsyn N-te 79.3 6.5 0.00014 33.5 6.1 62 278-340 4-65 (80)
124 PF07721 TPR_4: Tetratricopept 78.6 2.8 6E-05 27.3 3.0 24 320-343 3-26 (26)
125 COG4783 Putative Zn-dependent 78.3 6.4 0.00014 42.7 7.2 56 286-345 346-401 (484)
126 KOG3785 Uncharacterized conser 78.2 7.6 0.00016 41.7 7.5 110 230-349 12-122 (557)
127 PF09986 DUF2225: Uncharacteri 78.1 5.5 0.00012 38.0 6.0 73 287-359 132-210 (214)
128 smart00028 TPR Tetratricopepti 78.0 2.6 5.7E-05 24.2 2.6 26 284-309 5-30 (34)
129 PF09295 ChAPs: ChAPs (Chs5p-A 77.0 7.9 0.00017 40.6 7.3 68 280-351 234-301 (395)
130 PRK14720 transcript cleavage f 76.4 4.8 0.0001 46.5 5.9 60 285-346 70-144 (906)
131 KOG1156 N-terminal acetyltrans 75.6 12 0.00025 42.2 8.4 97 257-361 162-264 (700)
132 KOG1155 Anaphase-promoting com 75.1 8.9 0.00019 42.0 7.2 83 255-346 378-460 (559)
133 PRK04841 transcriptional regul 74.6 9.7 0.00021 41.4 7.5 63 283-345 694-758 (903)
134 PF04184 ST7: ST7 protein; In 74.4 7 0.00015 42.8 6.2 37 314-350 255-292 (539)
135 COG3071 HemY Uncharacterized e 74.3 7.6 0.00016 41.3 6.3 58 282-344 330-387 (400)
136 COG0457 NrfG FOG: TPR repeat [ 74.3 18 0.0004 28.0 6.9 60 281-344 96-156 (291)
137 TIGR00208 fliS flagellar biosy 73.4 22 0.00048 31.4 8.1 73 260-332 6-88 (124)
138 PF04733 Coatomer_E: Coatomer 73.2 11 0.00023 37.4 6.8 58 287-348 208-267 (290)
139 smart00028 TPR Tetratricopepti 73.0 7.6 0.00016 22.2 3.7 26 320-345 3-28 (34)
140 PF13181 TPR_8: Tetratricopept 72.7 7.7 0.00017 25.2 3.9 27 319-345 2-28 (34)
141 KOG0548 Molecular co-chaperone 71.9 9.1 0.0002 42.0 6.4 77 281-357 3-110 (539)
142 KOG2002 TPR-containing nuclear 71.9 6.5 0.00014 45.8 5.5 112 285-396 457-581 (1018)
143 PF14559 TPR_19: Tetratricopep 69.5 6.9 0.00015 28.7 3.5 57 255-316 5-61 (68)
144 KOG3060 Uncharacterized conser 69.3 18 0.00039 37.0 7.4 74 287-366 59-133 (289)
145 PRK15331 chaperone protein Sic 69.2 18 0.00039 34.2 6.9 72 287-364 78-152 (165)
146 KOG1125 TPR repeat-containing 68.8 7 0.00015 43.2 4.8 85 252-341 475-565 (579)
147 TIGR02508 type_III_yscG type I 67.8 15 0.00033 33.2 5.8 73 278-360 38-110 (115)
148 KOG2003 TPR repeat-containing 66.8 25 0.00054 39.0 8.3 12 96-107 164-175 (840)
149 PF13371 TPR_9: Tetratricopept 66.2 12 0.00026 27.8 4.3 51 256-311 10-60 (73)
150 PRK04841 transcriptional regul 66.2 47 0.001 36.3 10.3 61 285-345 457-518 (903)
151 PF10345 Cohesin_load: Cohesin 66.1 28 0.00061 37.6 8.6 125 242-366 344-505 (608)
152 KOG4056 Translocase of outer m 65.6 16 0.00035 34.1 5.8 46 273-318 70-119 (143)
153 PRK10370 formate-dependent nit 65.4 30 0.00065 32.1 7.6 64 293-360 52-117 (198)
154 KOG4626 O-linked N-acetylgluco 65.2 12 0.00026 42.6 5.7 67 278-348 113-181 (966)
155 PF08631 SPO22: Meiosis protei 65.0 34 0.00073 33.2 8.2 79 271-349 25-119 (278)
156 PF10300 DUF3808: Protein of u 64.1 14 0.00031 38.9 5.8 68 283-350 270-337 (468)
157 COG2976 Uncharacterized protei 63.0 25 0.00055 34.5 6.8 80 257-345 105-186 (207)
158 KOG0624 dsRNA-activated protei 62.9 14 0.00031 39.5 5.5 83 276-358 34-147 (504)
159 PF00515 TPR_1: Tetratricopept 62.1 15 0.00032 24.0 3.7 26 320-345 3-28 (34)
160 KOG3785 Uncharacterized conser 61.9 9.9 0.00021 40.9 4.2 60 290-352 32-93 (557)
161 PF13431 TPR_17: Tetratricopep 60.8 9.8 0.00021 26.3 2.7 33 303-339 2-34 (34)
162 KOG4626 O-linked N-acetylgluco 60.0 35 0.00075 39.1 8.0 10 60-69 46-55 (966)
163 smart00509 TFS2N Domain in the 59.9 12 0.00025 30.5 3.4 26 341-366 47-72 (75)
164 PF02064 MAS20: MAS20 protein 59.9 13 0.00028 33.4 4.0 41 278-318 61-101 (121)
165 COG4235 Cytochrome c biogenesi 59.6 22 0.00047 36.3 6.0 62 282-346 158-221 (287)
166 PRK04778 septation ring format 59.4 23 0.00049 38.3 6.5 59 251-314 495-553 (569)
167 cd00183 TFIIS_I N-terminal dom 59.2 12 0.00027 30.2 3.4 26 341-366 49-74 (76)
168 COG4235 Cytochrome c biogenesi 58.7 27 0.00058 35.7 6.4 38 287-324 234-271 (287)
169 PF14561 TPR_20: Tetratricopep 58.5 36 0.00079 28.4 6.2 52 281-334 23-74 (90)
170 KOG1173 Anaphase-promoting com 57.9 53 0.0012 36.8 8.9 112 246-361 205-322 (611)
171 TIGR00985 3a0801s04tom mitocho 57.6 55 0.0012 30.6 7.8 53 266-318 75-129 (148)
172 PF09670 Cas_Cas02710: CRISPR- 57.4 87 0.0019 32.4 10.0 75 274-350 125-201 (379)
173 PF13512 TPR_18: Tetratricopep 57.3 73 0.0016 29.5 8.5 80 278-358 45-140 (142)
174 PRK11619 lytic murein transgly 57.3 86 0.0019 34.9 10.5 59 304-372 332-390 (644)
175 PF14561 TPR_20: Tetratricopep 56.6 49 0.0011 27.7 6.7 64 299-366 7-71 (90)
176 KOG2002 TPR-containing nuclear 56.2 31 0.00067 40.6 7.1 61 286-346 722-797 (1018)
177 PF06160 EzrA: Septation ring 56.2 23 0.00049 38.4 5.8 58 252-314 492-550 (560)
178 cd02679 MIT_spastin MIT: domai 56.1 12 0.00027 31.2 3.0 25 321-345 11-35 (79)
179 PRK05685 fliS flagellar protei 55.3 76 0.0017 28.2 8.1 72 261-332 7-92 (132)
180 COG4105 ComL DNA uptake lipopr 55.1 71 0.0015 32.3 8.6 72 278-350 165-237 (254)
181 KOG2758 Translation initiation 54.0 62 0.0013 34.6 8.3 76 259-339 113-198 (432)
182 COG2976 Uncharacterized protei 53.9 39 0.00086 33.3 6.5 74 276-350 85-158 (207)
183 cd02682 MIT_AAA_Arch MIT: doma 52.6 20 0.00044 29.8 3.8 25 319-343 7-31 (75)
184 PLN03077 Protein ECB2; Provisi 51.5 1.4E+02 0.0031 33.1 11.0 57 290-348 599-655 (857)
185 COG1516 FliS Flagellin-specifi 50.7 40 0.00086 31.1 5.6 96 260-364 6-118 (132)
186 PF02259 FAT: FAT domain; Int 50.6 69 0.0015 30.4 7.5 71 276-346 142-212 (352)
187 PF14863 Alkyl_sulf_dimr: Alky 50.5 19 0.0004 32.9 3.5 52 281-336 71-122 (141)
188 PF04184 ST7: ST7 protein; In 49.6 47 0.001 36.8 6.8 60 283-344 262-321 (539)
189 PF14346 DUF4398: Domain of un 49.2 73 0.0016 26.6 6.6 36 274-309 39-74 (103)
190 smart00139 MyTH4 Domain in Myo 48.6 1.3E+02 0.0027 27.3 8.4 63 324-394 52-115 (144)
191 cd02684 MIT_2 MIT: domain cont 47.8 28 0.00061 28.4 3.8 31 280-310 6-36 (75)
192 PF15015 NYD-SP12_N: Spermatog 47.8 44 0.00095 36.7 6.2 71 269-339 165-249 (569)
193 cd02678 MIT_VPS4 MIT: domain c 47.6 32 0.00068 27.6 4.0 32 279-310 5-36 (75)
194 cd02683 MIT_1 MIT: domain cont 47.5 62 0.0013 26.6 5.8 21 323-343 11-31 (77)
195 PF07539 DRIM: Down-regulated 47.5 62 0.0014 29.4 6.4 87 329-422 10-101 (141)
196 KOG0686 COP9 signalosome, subu 47.1 71 0.0015 34.8 7.6 69 249-327 125-194 (466)
197 PF14853 Fis1_TPR_C: Fis1 C-te 47.0 75 0.0016 24.6 5.8 41 321-364 4-45 (53)
198 PF04212 MIT: MIT (microtubule 46.0 39 0.00085 26.2 4.3 29 282-310 7-35 (69)
199 cd02656 MIT MIT: domain contai 45.9 39 0.00084 26.7 4.3 31 280-310 6-36 (75)
200 COG4649 Uncharacterized protei 44.8 2.7E+02 0.0058 27.8 10.5 103 254-360 107-211 (221)
201 KOG1129 TPR repeat-containing 44.1 43 0.00093 35.9 5.4 55 285-344 228-282 (478)
202 KOG2183 Prolylcarboxypeptidase 44.0 8.9 0.00019 41.5 0.5 27 208-234 382-409 (492)
203 PF12348 CLASP_N: CLASP N term 44.0 52 0.0011 30.0 5.4 46 319-364 150-205 (228)
204 PF15469 Sec5: Exocyst complex 43.8 2.3E+02 0.005 25.8 9.5 85 249-348 68-152 (182)
205 KOG1126 DNA-binding cell divis 43.4 67 0.0015 36.3 7.0 58 284-345 527-584 (638)
206 KOG2003 TPR repeat-containing 43.3 37 0.00081 37.7 4.9 75 286-364 496-572 (840)
207 PF04212 MIT: MIT (microtubule 43.2 40 0.00086 26.2 3.9 24 320-343 7-30 (69)
208 PF06957 COPI_C: Coatomer (COP 42.9 1.3E+02 0.0027 32.5 8.7 40 274-313 198-237 (422)
209 PF12606 RELT: Tumour necrosis 42.9 10 0.00022 29.6 0.6 14 413-426 1-14 (50)
210 smart00745 MIT Microtubule Int 42.6 44 0.00095 26.3 4.1 30 281-310 9-38 (77)
211 KOG2053 Mitochondrial inherita 42.5 1.1E+02 0.0023 36.1 8.5 61 287-352 50-112 (932)
212 KOG0547 Translocase of outer m 42.4 1.7E+02 0.0037 32.9 9.6 91 270-364 316-408 (606)
213 COG3629 DnrI DNA-binding trans 42.0 4E+02 0.0086 27.3 12.7 71 285-359 158-236 (280)
214 TIGR02972 TMAO_torE trimethyla 41.6 31 0.00066 27.0 2.9 21 409-429 11-31 (47)
215 cd02681 MIT_calpain7_1 MIT: do 41.4 46 0.00099 27.6 4.2 32 279-310 5-36 (76)
216 KOG0550 Molecular chaperone (D 41.3 2.1E+02 0.0046 31.5 10.0 50 282-333 323-372 (486)
217 KOG1130 Predicted G-alpha GTPa 41.1 39 0.00086 37.1 4.7 60 278-337 15-74 (639)
218 COG3014 Uncharacterized protei 40.9 74 0.0016 34.2 6.5 117 271-392 49-208 (449)
219 PF06796 NapE: Periplasmic nit 39.3 36 0.00077 27.4 3.1 22 409-430 19-40 (56)
220 KOG4340 Uncharacterized conser 39.2 40 0.00086 35.8 4.3 69 283-355 147-220 (459)
221 PRK14970 DNA polymerase III su 38.9 3.8E+02 0.0082 26.8 10.9 95 256-359 171-278 (367)
222 PF05168 HEPN: HEPN domain; I 38.9 1.9E+02 0.0041 23.1 7.4 34 277-310 5-38 (118)
223 smart00745 MIT Microtubule Int 38.7 37 0.00081 26.7 3.2 22 322-343 12-33 (77)
224 KOG2047 mRNA splicing factor [ 38.4 3.6E+02 0.0077 31.4 11.5 88 257-346 527-614 (835)
225 PF02561 FliS: Flagellar prote 38.2 1.6E+02 0.0034 25.5 7.2 56 276-331 25-85 (122)
226 TIGR02973 nitrate_rd_NapE peri 38.0 38 0.00083 25.9 2.9 21 409-429 6-26 (42)
227 PF08711 Med26: TFIIS helical 37.9 30 0.00065 25.8 2.4 25 342-366 26-51 (53)
228 KOG1105 Transcription elongati 37.2 1E+02 0.0022 31.9 6.7 39 328-366 39-77 (296)
229 KOG1155 Anaphase-promoting com 36.7 1.2E+02 0.0026 33.7 7.4 76 283-360 469-547 (559)
230 TIGR03362 VI_chp_7 type VI sec 36.6 82 0.0018 32.0 5.9 64 280-345 213-277 (301)
231 TIGR00756 PPR pentatricopeptid 36.2 53 0.0011 20.5 3.1 23 324-346 6-28 (35)
232 KOG1125 TPR repeat-containing 36.2 86 0.0019 35.1 6.4 67 282-348 287-384 (579)
233 PF10938 YfdX: YfdX protein; 35.9 71 0.0015 29.3 4.9 70 245-314 70-151 (155)
234 KOG0553 TPR repeat-containing 35.5 73 0.0016 33.0 5.4 90 242-335 82-200 (304)
235 cd02684 MIT_2 MIT: domain cont 35.3 1E+02 0.0022 25.2 5.2 36 323-358 11-54 (75)
236 cd02680 MIT_calpain7_2 MIT: do 35.2 51 0.0011 27.5 3.5 34 279-312 5-38 (75)
237 PLN03098 LPA1 LOW PSII ACCUMUL 35.1 1.1E+02 0.0024 33.3 6.9 87 252-345 86-172 (453)
238 cd02678 MIT_VPS4 MIT: domain c 35.1 1.4E+02 0.0031 23.9 6.0 36 322-357 10-53 (75)
239 PF09450 DUF2019: Domain of un 34.7 53 0.0012 29.2 3.8 63 283-363 11-74 (106)
240 PF10300 DUF3808: Protein of u 34.1 94 0.002 33.0 6.1 62 283-347 308-376 (468)
241 PF10952 DUF2753: Protein of u 34.1 75 0.0016 29.7 4.7 64 287-358 57-124 (140)
242 COG2956 Predicted N-acetylgluc 34.0 1.8E+02 0.0039 31.2 8.0 78 278-359 105-182 (389)
243 cd02682 MIT_AAA_Arch MIT: doma 33.3 75 0.0016 26.6 4.2 34 277-310 3-36 (75)
244 KOG2376 Signal recognition par 33.2 4.9E+02 0.011 29.8 11.5 95 285-388 84-182 (652)
245 PF01535 PPR: PPR repeat; Int 33.0 56 0.0012 20.3 2.8 24 324-347 6-29 (31)
246 cd02683 MIT_1 MIT: domain cont 32.9 69 0.0015 26.3 3.9 31 280-310 6-36 (77)
247 KOG0624 dsRNA-activated protei 31.9 3.4E+02 0.0073 29.7 9.6 49 256-309 53-101 (504)
248 PLN02789 farnesyltranstransfer 31.9 1.8E+02 0.0039 29.5 7.5 56 287-348 78-139 (320)
249 COG4700 Uncharacterized protei 31.8 1.6E+02 0.0034 29.7 6.8 105 282-396 126-231 (251)
250 PF10516 SHNi-TPR: SHNi-TPR; 31.6 60 0.0013 23.7 3.0 26 284-309 5-30 (38)
251 KOG4814 Uncharacterized conser 31.6 1.2E+02 0.0027 34.9 6.7 121 221-348 301-424 (872)
252 PF07240 Turandot: Stress-indu 31.6 1.7E+02 0.0037 25.3 6.2 61 328-389 6-68 (85)
253 PRK11906 transcriptional regul 31.3 99 0.0022 33.7 5.8 59 284-345 376-434 (458)
254 cd02681 MIT_calpain7_1 MIT: do 31.2 70 0.0015 26.5 3.7 25 319-343 7-31 (76)
255 PF12968 DUF3856: Domain of Un 30.8 2.4E+02 0.0051 26.6 7.3 60 281-340 10-77 (144)
256 TIGR02561 HrpB1_HrpK type III 30.7 2.2E+02 0.0049 26.9 7.3 91 273-370 40-130 (153)
257 PF12862 Apc5: Anaphase-promot 30.6 2.9E+02 0.0063 22.6 7.3 69 259-327 19-90 (94)
258 PF07219 HemY_N: HemY protein 30.4 2.2E+02 0.0047 24.2 6.7 34 276-309 55-88 (108)
259 PF08631 SPO22: Meiosis protei 30.0 1.8E+02 0.004 28.2 7.0 56 253-308 218-274 (278)
260 PF09477 Type_III_YscG: Bacter 29.6 1.8E+02 0.0039 26.6 6.3 72 278-359 39-110 (116)
261 KOG1173 Anaphase-promoting com 29.6 44 0.00094 37.4 2.9 78 286-363 420-501 (611)
262 PF00610 DEP: Domain found in 29.4 51 0.0011 25.6 2.5 35 313-347 16-51 (74)
263 cd02656 MIT MIT: domain contai 29.3 2.1E+02 0.0044 22.6 6.0 35 323-357 11-53 (75)
264 KOG4563 Cell cycle-regulated h 29.0 96 0.0021 33.3 5.1 42 276-320 37-78 (400)
265 smart00049 DEP Domain found in 28.6 50 0.0011 25.8 2.3 35 312-347 18-52 (77)
266 PF09797 NatB_MDM20: N-acetylt 28.4 4.1E+02 0.0089 26.8 9.3 85 256-344 150-243 (365)
267 PF10345 Cohesin_load: Cohesin 28.1 2.7E+02 0.0059 30.2 8.5 88 279-366 360-462 (608)
268 PF13281 DUF4071: Domain of un 28.1 3.6E+02 0.0078 28.6 9.1 96 294-396 155-261 (374)
269 PRK10316 hypothetical protein; 27.6 1.9E+02 0.0041 28.7 6.5 48 267-314 152-203 (209)
270 cd03311 CIMS_C_terminal_like C 27.4 44 0.00095 33.0 2.3 54 217-275 3-56 (332)
271 smart00748 HEPN Higher Eukaryt 27.2 85 0.0018 26.1 3.7 33 278-310 2-34 (113)
272 KOG3617 WD40 and TPR repeat-co 26.9 1.2E+02 0.0026 36.2 5.7 65 283-347 861-941 (1416)
273 COG4783 Putative Zn-dependent 26.5 1.8E+02 0.0038 32.1 6.7 137 251-393 275-423 (484)
274 PF12487 DUF3703: Protein of u 26.4 4.8E+02 0.01 23.6 8.3 47 275-321 4-50 (112)
275 PRK06585 holA DNA polymerase I 26.2 6.4E+02 0.014 24.9 11.0 106 254-368 144-264 (343)
276 PF05969 PSII_Ycf12: Photosyst 25.6 80 0.0017 23.1 2.7 23 410-433 10-32 (33)
277 PF05235 CHAD: CHAD domain; I 25.4 1.8E+02 0.004 26.8 5.8 79 283-367 103-193 (231)
278 COG5010 TadD Flp pilus assembl 24.8 2.7E+02 0.0059 28.4 7.2 65 281-349 135-199 (257)
279 KOG1070 rRNA processing protei 24.8 4.2E+02 0.0091 33.3 9.7 103 258-364 1494-1614(1710)
280 PLN03218 maturation of RBCL 1; 24.5 4.1E+02 0.0088 31.7 9.6 54 290-346 659-712 (1060)
281 KOG3807 Predicted membrane pro 24.5 3.9E+02 0.0085 29.1 8.6 49 314-362 271-320 (556)
282 PRK09121 5-methyltetrahydropte 24.4 51 0.0011 33.5 2.2 53 217-274 6-58 (339)
283 COG3947 Response regulator con 24.2 1.5E+02 0.0032 31.4 5.4 56 325-387 286-342 (361)
284 KOG0564 5,10-methylenetetrahyd 23.8 34 0.00073 37.9 0.8 66 138-225 453-518 (590)
285 TIGR03504 FimV_Cterm FimV C-te 23.0 1E+02 0.0022 23.1 3.0 26 283-308 2-27 (44)
286 cd04444 DEP_PLEK2 DEP (Disheve 22.9 1.2E+02 0.0026 27.2 4.0 69 313-390 30-102 (109)
287 KOG2709 Uncharacterized conser 22.7 64 0.0014 35.4 2.6 29 319-347 23-51 (560)
288 cd02677 MIT_SNX15 MIT: domain 22.7 1.2E+02 0.0026 24.9 3.6 27 284-310 10-36 (75)
289 PF13646 HEAT_2: HEAT repeats; 22.0 3.5E+02 0.0075 20.6 5.9 28 334-361 29-56 (88)
290 TIGR02710 CRISPR-associated pr 21.8 2.6E+02 0.0057 29.7 6.7 66 277-343 127-196 (380)
291 KOG1156 N-terminal acetyltrans 21.5 1.2E+02 0.0026 34.7 4.4 58 283-344 10-67 (700)
292 PF11817 Foie-gras_1: Foie gra 21.3 2E+02 0.0044 27.6 5.5 48 298-345 156-205 (247)
293 PF13041 PPR_2: PPR repeat fam 21.2 1.1E+02 0.0025 21.7 2.9 23 325-347 10-32 (50)
294 PF08969 USP8_dimer: USP8 dime 21.1 1.4E+02 0.003 25.6 3.9 33 278-310 36-68 (115)
295 PF02184 HAT: HAT (Half-A-TPR) 21.1 86 0.0019 22.7 2.2 19 334-352 3-22 (32)
296 PF12569 NARP1: NMDA receptor- 20.8 8.8E+02 0.019 26.6 10.6 89 253-346 158-256 (517)
297 PRK14963 DNA polymerase III su 20.8 1E+03 0.022 25.9 11.0 99 255-365 178-291 (504)
298 TIGR00847 ccoS cytochrome oxid 20.7 1.4E+02 0.003 23.5 3.4 25 409-433 6-30 (51)
299 COG3404 Methenyl tetrahydrofol 20.4 1.7E+02 0.0036 29.1 4.6 47 245-296 96-142 (208)
300 PF04652 DUF605: Vta1 like; I 20.4 65 0.0014 32.4 2.0 43 268-310 337-379 (380)
301 PF00244 14-3-3: 14-3-3 protei 20.3 2.3E+02 0.005 27.5 5.6 47 297-343 143-194 (236)
302 PF12854 PPR_1: PPR repeat 20.1 1.2E+02 0.0025 20.8 2.6 21 324-344 13-33 (34)
No 1
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.15 E-value=8.3e-06 Score=60.48 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
|..|..+++.|+|.+|+..|+.++..-|. ..++.++|+.||...|+.++|+.+|+++. ..|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 67899999999999999999999988854 78999999999999999999999999984 5664
No 2
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.02 E-value=2.1e-05 Score=58.33 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=52.3
Q ss_pred HHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHH
Q 013807 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVS 353 (436)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVr 353 (436)
||+.|+|.+|+.+|+++++.-|. ..++.+.|+.||-..|+.++|+.+++++. .+|+ +.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 68999999999999999999876 56788899999999999999999999996 7888 4444
No 3
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.88 E-value=0.00012 Score=57.55 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR 357 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk 357 (436)
.+..+..|..++..|+|.+|+.+|+.++..-+... .-..+.+.++.||...|+.++|+.+|+++. .+|+.....+|.
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 34466777778888888888888887776654332 224556667777777888888888887774 577777766663
No 4
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.83 E-value=0.00011 Score=67.15 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA 356 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA 356 (436)
..+..|+.|..+|+.|+|.+|+..|+++.+.-| .|.+...+++|++.||-..|+.++|+..|+++. .||+..-...|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 356799999999999999999999999998865 488999999999999999999999999999974 79987644333
No 5
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00018 Score=56.55 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.+..|..|..++..|+|.+|+.+|++++..-+ .+...-.+.++++.||...|+.++|+.+|+++. .+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 35679999999999999999999999987754 334456889999999999999999999999986 4676
No 6
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=0.00016 Score=53.82 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC-ChHHHHHHHHHHh
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-RPKEARIMYEKLQ 345 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-R~~EAiaLYkkL~ 345 (436)
++..+..|..++..|+|.+|+.+|++|++.-+. ...+..+++.||...| +.++|+..|++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 456788999999999999999999999998754 4568899999999999 7999999999864
No 7
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.62 E-value=0.00036 Score=67.71 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (436)
+..+.+.+|++=+ ...|.-.......|..|..++..|+|.+|+.+|+++++.-+ .|..-.++-+.++.||...|+.+
T Consensus 158 ~y~~Ai~af~~fl--~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 158 RQDDAIVAFQNFV--KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred CHHHHHHHHHHHH--HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHH
Confidence 4444555544333 22344443345579999999999999999999999998875 66777889999999999999999
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHH
Q 013807 336 EARIMYEKLQ-SHPNALVSKRARQFM 360 (436)
Q Consensus 336 EAiaLYkkL~-sHP~~eVrKQAkrLl 360 (436)
+|+.+|+++. .||+..-.++|++.|
T Consensus 235 ~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 9999999996 799999999998876
No 8
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.48 E-value=0.00048 Score=62.57 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (436)
.++.|+.|+.+|+.|+|.+|+..||.+.+.-|+ ++..-.++|||+-||=..++.++|++-|++.. -||.-.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 356899999999999999999999999998876 57888999999999999999999999999996 477544
No 9
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.40 E-value=0.00063 Score=51.97 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
+......|..++..|+|.+|+.+|++|++....-..-+ +.+-..++.||...|+.++|+.+|++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34456789999999999999999999998842221122 556667999999999999999999985
No 10
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.32 E-value=0.0041 Score=53.46 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN 349 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 349 (436)
........|..++.+|+.|+|.+|+..|+++++.. ....+.-.+.+.||.||-..|+.++|+.+++++..++.
T Consensus 44 s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~ 116 (145)
T PF09976_consen 44 SPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF 116 (145)
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch
Confidence 33445667888999999999999999999999877 55588889999999999999999999999988654443
No 11
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.00096 Score=63.55 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (436)
..++.|..|..+|+.|+|.+|+..||++.+.-+ .|.+.-.+.+|++.||=..++.++|+..|++.. .||+-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 455689999999999999999999999998666 558888899999999999999999999999995 677764
No 12
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.24 E-value=0.0015 Score=57.01 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR 357 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk 357 (436)
.|+.+..+...|+..+|+++|++|+.. .......-.+.|+|+.+|..+||.++|+++-++.. .||..+.....+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 566777777778888888888887774 23333344577778888888888888888887775 567766655444
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.21 E-value=0.0028 Score=52.11 Aligned_cols=77 Identities=14% Similarity=-0.015 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH----HHHH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV----SKRA 356 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV----rKQA 356 (436)
..+..|..++..|++.+|+..|+.+++.-+. ...+...+++||...|+.++|+..|++.. .+|+... .+++
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAALDPD----DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3456688888889999999999988776543 35666888999999999999999998885 5666544 5566
Q ss_pred HHHHHH
Q 013807 357 RQFMFS 362 (436)
Q Consensus 357 krLlyi 362 (436)
..+++.
T Consensus 129 ~~~~~~ 134 (135)
T TIGR02552 129 EAMLES 134 (135)
T ss_pred HHHHhc
Confidence 666654
No 14
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.18 E-value=0.0014 Score=59.09 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=64.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 274 p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (436)
|.-....+..|..|..++..|+|.+|+..|++++..-+ .+...-.+.+.++.||.+.|+.++|+..|+++. .||+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 33445666789999999999999999999999988765 334566788999999999999999999999995 677544
No 15
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.0027 Score=47.66 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=59.1
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHH
Q 013807 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFM 360 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLl 360 (436)
...++.+++|..|+..++.++..-|.. -.+.+.+++||-..|+.++|+..+++.. .+|+.....+++++|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 356899999999999999999997663 3344558999999999999999999985 799888888887765
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.09 E-value=0.0053 Score=53.49 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
...+..+.+..|+.-. .++|..- +..+..|..++..|+|.+|+..|+.|+.+-+. ...+...|+.||...|
T Consensus 36 ~~g~~~~A~~~~~~al--~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~----~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 36 QEGDYSRAVIDFSWLV--MAQPWSW---RAHIALAGTWMMLKEYTTAINFYGHALMLDAS----HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HcCCHHHHHHHHHHHH--HcCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHcC
Confidence 3444555666666543 5555543 33577899999999999999999999986543 4677888999999999
Q ss_pred ChHHHHHHHHHHh-cCCCH----HHHHHHHHHH
Q 013807 333 RPKEARIMYEKLQ-SHPNA----LVSKRARQFM 360 (436)
Q Consensus 333 R~~EAiaLYkkL~-sHP~~----eVrKQAkrLl 360 (436)
|.++|+..|++.. ..|+- .++.++++++
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999975 45554 5666666654
No 17
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.03 E-value=0.0023 Score=44.82 Aligned_cols=64 Identities=27% Similarity=0.258 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
.+..|..++..|++.+|+..|+.++...+... .+.++++.||-..|+.++|+.+|+++. .+|..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46678888888999999999998887765443 677888888888899999999988874 44443
No 18
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.03 E-value=0.007 Score=54.55 Aligned_cols=65 Identities=15% Similarity=0.024 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (436)
.+..|..++.+|+|.+|+..|+.+++..+. +...-++.+.++.+|..+|+.++|+.++++|. +||
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 357789999999999999999999988765 34556888999999999999999999999996 677
No 19
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.91 E-value=0.01 Score=41.50 Aligned_cols=64 Identities=25% Similarity=0.211 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (436)
...+..|..++..|++.+|+.+|+.++...+... .+...++.+|...|+.++|+..++++. .+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 4467789999999999999999999998765544 777889999999999999999999985 455
No 20
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.76 E-value=0.0027 Score=49.66 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=27.4
Q ss_pred CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 293 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 293 rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.|+|+.|+.+||++.+.-+.++ -..+.+++|.||=..|+.++|+.+++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~ 51 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKL 51 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 4556666666666665555433 3334444566666666666666666553
No 21
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.66 E-value=0.015 Score=50.91 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (436)
Q Consensus 258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (436)
.+.+.-|++-.-..++.. ...+..+..|..+..-|+|.+|+..|++++...|. ..+.+.++..+|+|+-+.||++||
T Consensus 18 ~~Ai~~Y~~Al~~gL~~~--~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 18 EEAIPLYRRALAAGLSGA--DRRRALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHH
Confidence 455666776655455544 33457889999999999999999999999886643 457888999999999999999999
Q ss_pred HHHHHHHh
Q 013807 338 RIMYEKLQ 345 (436)
Q Consensus 338 iaLYkkL~ 345 (436)
+.+.-.+.
T Consensus 95 l~~~l~~l 102 (120)
T PF12688_consen 95 LEWLLEAL 102 (120)
T ss_pred HHHHHHHH
Confidence 99987653
No 22
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.0064 Score=66.17 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=64.6
Q ss_pred CcCCcchH-HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch-----------hHHHHHHHHHHHhcCChHHH
Q 013807 270 LNVDPKLK-SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEA 337 (436)
Q Consensus 270 l~Vdp~~k-~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EA 337 (436)
+..-|++- ..-+..|..+-.+.++|+|.+|++.||+|+..|-..-..+ --+.+|||-+|+-+|+++||
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34445543 4677899999999999999999999999977665444333 25678999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q 013807 338 RIMYEKLQSHPNAL 351 (436)
Q Consensus 338 iaLYkkL~sHP~~e 351 (436)
.++|..+.+|-..+
T Consensus 244 ~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 244 SSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999997544433
No 23
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.62 E-value=0.014 Score=58.36 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=81.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHH
Q 013807 246 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWS 325 (436)
Q Consensus 246 teEEkaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLA 325 (436)
.+-..+-+..+..+.+..|++-+ .++|. .....+..|..++..|+|.+|+..|++|+.+-+. ...+.+.++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al--~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg 77 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAI--DLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKG 77 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHH
Confidence 44455777888889999998776 44553 2566788899999999999999999999998653 467889999
Q ss_pred HHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHHH
Q 013807 326 ICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQF 359 (436)
Q Consensus 326 iAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkrL 359 (436)
.||..+|+.++|+..|+++. .+|+ ..+...-+++
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999985 5665 4444443333
No 24
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.58 E-value=0.011 Score=59.03 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (436)
.+.+..|..+|..|+|.+|+++|++|+.+-+.. ..+.+.++.||..+|+.++|+..|+++. ..|
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 457788999999999999999999999987765 3567889999999999999999999996 455
No 25
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.57 E-value=0.047 Score=46.40 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCCc-----chHHHHHHHH-----HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHH
Q 013807 251 AAKEERTRQLLAAYKKSVGLNVDP-----KLKSECEKAL-----KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA 320 (436)
Q Consensus 251 aaR~~rtke~LaaYrk~~Gl~Vdp-----~~k~e~eea~-----~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea 320 (436)
..+....++.|+-|+...=-+++. .....+++.+ +.+..+.+.|++.+|+..++.++..=|.+ -.+
T Consensus 23 ~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~----E~~ 98 (146)
T PF03704_consen 23 EEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD----EEA 98 (146)
T ss_dssp HHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----HHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----HHH
Confidence 445567778888888776555554 1223333322 33667788999999999999999998764 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh--------cCCCHHHHHHHHHHH
Q 013807 321 ALQWSICQDSLHRPKEARIMYEKLQ--------SHPNALVSKRARQFM 360 (436)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL~--------sHP~~eVrKQAkrLl 360 (436)
..+|..||-+.||+.+|+..|++++ ..|+++++.-.++||
T Consensus 99 ~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~il 146 (146)
T PF03704_consen 99 YRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREIL 146 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHhC
Confidence 6778899999999999999999884 358888888777764
No 26
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.52 E-value=0.0059 Score=53.19 Aligned_cols=63 Identities=11% Similarity=0.016 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.+..|..++..|+|.+|+.+|..++..=+.. ..+.+.++.|+...||.++|+..|++.. -.|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS----WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4567999999999999999999998876554 5677889999999999999999999996 4553
No 27
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.45 E-value=0.02 Score=49.28 Aligned_cols=82 Identities=26% Similarity=0.259 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
..+.+.+..|++=..-..|+.++..+ .+..+..++..|+|.+|+..|+.+ ....+.+.+...+..+|-+.|+.
T Consensus 62 g~~~~A~~~l~~~~~~~~d~~l~~~a--~l~LA~~~~~~~~~d~Al~~L~~~-----~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 62 GDYDEAKAALEKALANAPDPELKPLA--RLRLARILLQQGQYDEALATLQQI-----PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred CCHHHHHHHHHHHHhhCCCHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHhc-----cCcchHHHHHHHHHHHHHHCCCH
Confidence 44555566666555545666666555 677899999999999999999772 34557788999999999999999
Q ss_pred HHHHHHHHH
Q 013807 335 KEARIMYEK 343 (436)
Q Consensus 335 ~EAiaLYkk 343 (436)
++|+..|++
T Consensus 135 ~~A~~~y~~ 143 (145)
T PF09976_consen 135 DEARAAYQK 143 (145)
T ss_pred HHHHHHHHH
Confidence 999999986
No 28
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.44 E-value=0.0062 Score=47.64 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 343 (436)
...-.|..|..+|..|+|.+|++.|++ ..+.. -.-.+.+.+|.||-.+|+.+|||..+++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~--~~~~~---~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK--LKLDP---SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC--HTHHH---CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH--hCCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 334567789999999999999999988 22222 2256777789999999999999999976
No 29
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.39 E-value=0.023 Score=49.63 Aligned_cols=74 Identities=19% Similarity=0.109 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
...++...+..|..++..|+|.+|+.+|++|+...+. +..-..+...+++||...|++++|+..|++.. .+|..
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 4456777889999999999999999999999987542 22234577789999999999999999999975 45654
No 30
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.32 E-value=0.059 Score=57.16 Aligned_cols=67 Identities=22% Similarity=0.230 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH 347 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH 347 (436)
++..+..|..++..|+|.+|+..|++|+++-|..-. .-.+..+++.||-.+|+.+||++.|++-...
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344788899999999999999999999999754311 1134789999999999999999999998653
No 31
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.32 E-value=0.04 Score=52.19 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.-....|..+++.|++.+|+.+|++++...+....+.....+.++.+|-..|+.++|+.+|+++.
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 34566799999999999999999999998876556656666779999999999999999999974
No 32
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.23 E-value=0.038 Score=56.00 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch------------------------------hHHHHHH
Q 013807 275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQW 324 (436)
Q Consensus 275 ~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------------------------GeaqLwL 324 (436)
+.++.+++.=.+|..+|+.++|++||..|.+|+.+.|.+-.+. -++-.-|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4778888888899999999999999999999999998775443 1333446
Q ss_pred HHHHHhcCChHHHHHHHHHH-hcCCCHHHHHH
Q 013807 325 SICQDSLHRPKEARIMYEKL-QSHPNALVSKR 355 (436)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQ 355 (436)
-+||=+.|++++|+.-|++- .--|+-++=|.
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHH
Confidence 67777788888888777774 46777765554
No 33
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.19 E-value=0.0059 Score=39.47 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
++.++++.||...|+.++|+..|++|. .||+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 478899999999999999999999996 7886
No 34
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.16 E-value=0.061 Score=47.39 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
..+...+..|..++..|+|.+|+.+|++|++.-+... --+.+...++.||...|+.++|+..|++.. .||+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 5556678999999999999999999999987654321 135688889999999999999999999985 57754
No 35
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.16 E-value=0.046 Score=44.90 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=59.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 271 ~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.++|+.. ...+..|..++..|+|.+|+..|+++.+.-+.. ..+...++.||-..|++++|+.+|+++. .+|.
T Consensus 11 ~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 11 GLDSEQL---EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN----SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred cCChhhH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555543 447889999999999999999999998876543 4677789999999999999999999995 5664
No 36
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.15 E-value=0.029 Score=54.68 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=63.1
Q ss_pred HHHHHHHHHH-HhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013807 281 EKALKDGDSL-MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA 356 (436)
Q Consensus 281 eea~~~Gk~A-merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA 356 (436)
+..|..+..+ +..|+|.+|+..|++.++.-| +|.+-..+.+||+.+|-..|+.++|+..|+++. .||.-.-.-.|
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4568888876 778999999999999998886 467778999999999999999999999999996 68875443333
No 37
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.09 E-value=0.016 Score=63.64 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch------------------------------hHHHHHHHHHHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQWSICQD 329 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------------------------GeaqLwLAiAyd 329 (436)
.+..+-.|..++.+|.|.+|..+|+.++++.|-..... ..+++.+|+|++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 33455567777778888888888777777776654322 578889999999
Q ss_pred hcCChHHHHHHHHHHh-cCCC
Q 013807 330 SLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 330 A~GR~~EAiaLYkkL~-sHP~ 349 (436)
.+|+++||+++|+++. .||+
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCC
Confidence 9999999999999997 6775
No 38
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.08 E-value=0.02 Score=60.01 Aligned_cols=59 Identities=8% Similarity=-0.100 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
-+..|..++..|+|.+|++.+++|+++-+.. -.+...++.||..+|+.++|+.-|.++.
T Consensus 163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALELDPDY----SKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555566666666666666666554332 2445555666666666666666555543
No 39
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.05 E-value=0.065 Score=49.47 Aligned_cols=82 Identities=12% Similarity=0.078 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHH-HhcCC--h
Q 013807 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ-DSLHR--P 334 (436)
Q Consensus 258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAy-dA~GR--~ 334 (436)
.+.+..|+... ..+|..-+ .-+..|..++..|+|.+|+..|++|+.+-+.+. .+.+.+|+|+ ...|+ .
T Consensus 56 ~~~i~~l~~~L--~~~P~~~~---~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~----~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 56 EAQLQALQDKI--RANPQNSE---QWALLGEYYLWRNDYDNALLAYRQALQLRGENA----ELYAALATVLYYQAGQHMT 126 (198)
T ss_pred HHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCCc
Confidence 45555555444 33344332 355567788888888888888888877766543 3344555553 55555 3
Q ss_pred HHHHHHHHHHh-cCC
Q 013807 335 KEARIMYEKLQ-SHP 348 (436)
Q Consensus 335 ~EAiaLYkkL~-sHP 348 (436)
++|+.++++.. .+|
T Consensus 127 ~~A~~~l~~al~~dP 141 (198)
T PRK10370 127 PQTREMIDKALALDA 141 (198)
T ss_pred HHHHHHHHHHHHhCC
Confidence 56666665553 344
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.99 E-value=0.088 Score=44.37 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (436)
+..+.+..|.+-. ..+|. .....+..|..++..|++.+|+.+|+++++.-+. .+.+...++.+|...|+.+
T Consensus 46 ~~~~A~~~~~~~l--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 46 DLEVAKENLDKAL--EHDPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN----NGDVLNNYGTFLCQQGKYE 116 (234)
T ss_pred CHHHHHHHHHHHH--HhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcccHH
Confidence 4445555555443 22332 1344455688888888888888888888876543 2456777888888888888
Q ss_pred HHHHHHHHHhcCC
Q 013807 336 EARIMYEKLQSHP 348 (436)
Q Consensus 336 EAiaLYkkL~sHP 348 (436)
+|+.+|++...++
T Consensus 117 ~A~~~~~~~~~~~ 129 (234)
T TIGR02521 117 QAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888886543
No 41
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.98 E-value=0.044 Score=60.34 Aligned_cols=101 Identities=11% Similarity=0.038 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (436)
.|..+..+.|..++.-. ..+|.. ....+..|..+.+-|+|.+|++.|++++..-+ ---.+.++|+.+|.-.
T Consensus 131 ~~~~~~eeA~~~~~~~l--~~~p~~---~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p----~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 131 KRQQGIEAGRAEIELYF--SGGSSS---AREILLEAKSWDEIGQSEQADACFERLSRQHP----EFENGYVGWAQSLTRR 201 (694)
T ss_pred HHhccHHHHHHHHHHHh--hcCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHc
Confidence 45566667777776554 333432 33467889999999999999999999998322 2237899999999999
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013807 332 HRPKEARIMYEKLQSHPNALVSKRARQFMF 361 (436)
Q Consensus 332 GR~~EAiaLYkkL~sHP~~eVrKQAkrLly 361 (436)
|+.++|.+.|++..-+-...++|-++.+.-
T Consensus 202 G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (694)
T PRK15179 202 GALWRARDVLQAGLDAIGDGARKLTRRLVD 231 (694)
T ss_pred CCHHHHHHHHHHHHHhhCcchHHHHHHHHH
Confidence 999999999999987666777776766543
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.62 E-value=0.1 Score=52.98 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (436)
+..+.+..|++-..+.-++ ...+..+..+...|++.+|+..|+++++..+.. -.+...++.+|...|+.+
T Consensus 718 ~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 718 DYPAAIQAYRKALKRAPSS------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND----AVLRTALAELYLAQKDYD 787 (899)
T ss_pred CHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHH
Confidence 4445555555544333322 234556777778888888888888887766543 367778888888888888
Q ss_pred HHHHHHHHHh-cCCCHH
Q 013807 336 EARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 336 EAiaLYkkL~-sHP~~e 351 (436)
+|+.+|+++. .+|+..
T Consensus 788 ~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 788 KAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHHHHHHHHHhCCCCH
Confidence 8888888874 677643
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.59 E-value=0.12 Score=43.54 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
...+..|..++..|++.+|+.+|++++...+.. ..+.+.++.+|...|+.++|+.++++...
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQR----PESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667888999999999999999998876542 45677888999999999999999998764
No 44
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.52 E-value=0.04 Score=51.06 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.+..+..|.-|-.+|+.|+|.+|...|+..+..=+-+.+ --+-|++|+++.|+.++||..|.+..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455667999999999999999999999998776655443 35679999999999999999999874
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.50 E-value=0.071 Score=51.01 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPN 349 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~ 349 (436)
.+..|..++.+|+|.+|+..|++++..-......-..+...|+.+|...|+.++|+.+|+++.. +|.
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 139 (389)
T PRK11788 72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF 139 (389)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc
Confidence 3445666666666666666666665532111111234455566666666666666666666653 443
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.45 E-value=0.062 Score=56.39 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.+..|..++..|+|.+|+..|++|+++-+.+ ..+.++|+.+|...|+.++|+.+|++.. .+|+
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF----IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4455777777777777777777777765533 2445667777777777777777777763 4554
No 47
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.43 E-value=0.31 Score=46.64 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC-
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR- 333 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR- 333 (436)
.+..+.+..|++=. +..|......+..|..|..+|..|+|.+|+.+|+..+..-|..... ..|...+++|+..+++
T Consensus 46 g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 46 GNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDS 122 (243)
T ss_pred CCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchh
Confidence 44445555555443 3456665566668999999999999999999999999988777655 7888899999766652
Q ss_pred -----------------hHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH---hhhhhhhcccCCCCcchHHHHHHhhccc
Q 013807 334 -----------------PKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ---AMEMMKVRSSSDKNTDYRNFFEAFVEDK 392 (436)
Q Consensus 334 -----------------~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE---Ap~llKv~~~~~~~t~Yd~Yf~~f~~~k 392 (436)
..+|+..+++|. .||+-+-...|++.|--+. |-.=+-|...|.+...|..=...|..==
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 368999999996 8999999999987665554 2222345555655555643222222223
Q ss_pred ccccCcc
Q 013807 393 TNYPLQE 399 (436)
Q Consensus 393 t~y~~~e 399 (436)
.+|+.+.
T Consensus 203 ~~Yp~t~ 209 (243)
T PRK10866 203 RDYPDTQ 209 (243)
T ss_pred HHCCCCc
Confidence 3566554
No 48
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.29 E-value=0.056 Score=51.82 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhHHHHHHhhccc--CccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc--CCCHHHHH
Q 013807 280 CEKALKDGDSLMDS-GKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--HPNALVSK 354 (436)
Q Consensus 280 ~eea~~~Gk~Amer-GkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--HP~~eVrK 354 (436)
++...+.|..+.+. |+|.+|+++|++|++.... .+.....+.+++|.+|-.+|+.++|+.+|+++.. .-+...+=
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 33444557777777 8999999999999988643 4455678888999999999999999999999963 23333455
Q ss_pred HHHHHH
Q 013807 355 RARQFM 360 (436)
Q Consensus 355 QAkrLl 360 (436)
.++++.
T Consensus 194 ~~~~~~ 199 (282)
T PF14938_consen 194 SAKEYF 199 (282)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 666644
No 49
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.26 E-value=0.31 Score=46.67 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPN 349 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~ 349 (436)
.+..|..+++.|++.+|+.+|++++...+. ...+.+.++.+|...|+.++|+.+|+++.. +|+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQ----CVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 345666777777777777777777765432 245666677777777777777777777653 443
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.03 E-value=0.17 Score=48.88 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=63.8
Q ss_pred HHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHH
Q 013807 259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR 338 (436)
Q Consensus 259 e~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi 338 (436)
+.+..|.+-. .++|.. ...-+..|..++..|+|.+|++.|++|+++-|.. ..+.+.+++||-..||.++|+
T Consensus 82 ~A~~~~~~Al--~l~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 82 LARNDFSQAL--ALRPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHHHHHHH--HcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHH
Confidence 3344454443 344543 2345678999999999999999999999876543 567888999999999999999
Q ss_pred HHHHHHh-cCCCHH
Q 013807 339 IMYEKLQ-SHPNAL 351 (436)
Q Consensus 339 aLYkkL~-sHP~~e 351 (436)
..|++.. .+|+.-
T Consensus 153 ~~~~~al~~~P~~~ 166 (296)
T PRK11189 153 DDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHhCCCCH
Confidence 9999974 688654
No 51
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.01 E-value=0.13 Score=55.36 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
..+..|..++..|++.+|+.+|++|++.-+. ...+..+|+.+|...|+.++|++.|+++. .||+.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3556699999999999999999999987544 45678889999999999999999999986 68864
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=94.91 E-value=0.13 Score=53.86 Aligned_cols=61 Identities=7% Similarity=-0.110 Sum_probs=50.6
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
..|..++..|++.+|+.+|++|+++-|.... +..+++.+|-..||.++|+..|++.. -+|.
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLSPISAD----IKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4578888999999999999999988766543 56788999999999999999999975 5665
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.81 E-value=0.11 Score=52.87 Aligned_cols=61 Identities=16% Similarity=0.065 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
...+..|+.++..|+|.+|+..|++++..-+. ..++...++.+|...|+.++|+..|+++.
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566677777777777777777777754332 44666667777777777777777777764
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.74 E-value=0.091 Score=52.79 Aligned_cols=58 Identities=22% Similarity=0.184 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
-.+..|+.++..|++.+|..+||++++.-|. -.+.++|+.+|++.|++++|..+|++=
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----AYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677899999999999999999999987543 355689999999999999999999964
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.74 E-value=0.089 Score=49.26 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (436)
.+.-+..+.+..|++-+ .++|..... ....+..+.+.|++.++.+.++......+.++.+. ..++.||..+
T Consensus 157 ~~~G~~~~A~~~~~~al--~~~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~----~~la~~~~~l 227 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKAL--ELDPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW----DALAAAYLQL 227 (280)
T ss_dssp HHCCHHHHHHHHHHHHH--HH-TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC----HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH--HcCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH----HHHHHHhccc
Confidence 34446667777777654 666764443 33457788999999998888888877776666654 4579999999
Q ss_pred CChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 013807 332 HRPKEARIMYEKLQ-SHP-NALVSKRARQF 359 (436)
Q Consensus 332 GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL 359 (436)
|+.++|+.+|+++. .|| ++.+...=..+
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc
Confidence 99999999999996 477 56665543333
No 56
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.47 E-value=0.085 Score=39.48 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013807 321 ALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMF 361 (436)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly 361 (436)
.|.||-+|-.+|+.+.|+.+-+.+..+.+...+.+|+.||=
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA 42 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999973
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.44 E-value=0.27 Score=46.09 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (436)
...+++.+.|....... .......--+..|..+...|+..+|+..|++|+.+-|.++. +...|+.+|-..
T Consensus 124 ~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~~ 193 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELP------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLIDM 193 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHC
Confidence 34455555666554322 12233444667899999999999999999999999988765 455567778889
Q ss_pred CChHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHH
Q 013807 332 HRPKEARIMYEKLQS-H-PNALVSKRARQFMFSF 363 (436)
Q Consensus 332 GR~~EAiaLYkkL~s-H-P~~eVrKQAkrLlyiL 363 (436)
|+.++|+.+++.+.. . .++.+...=....+.|
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 999998888888852 2 3444444333333333
No 58
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.41 E-value=0.34 Score=51.61 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=59.2
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHHH
Q 013807 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF 361 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly 361 (436)
|-.+.-+|++.+|..+|++|+++-+ + -++-+.++.+|+..||.++|++.|++- .-.|...+.-..++|.|
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f 497 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVF 497 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccc
Confidence 5556678999999999999999885 3 367888999999999999999999876 46888888888877765
No 59
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.34 E-value=0.3 Score=42.65 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHH-----
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQD----- 329 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAyd----- 329 (436)
.+..+.+..|++-..+.-++. ......+..|..+...|++.+|+.+|++|+..-+.. +.....++.+|-
T Consensus 49 g~~~~A~~~~~~al~l~~~~~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPY--DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQ 122 (168)
T ss_pred CCHHHHHHHHHHHHhccccch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHH
Confidence 345567777887776654443 233356778999999999999999999999874333 455667777777
Q ss_pred --hcCChHHHHHHHH
Q 013807 330 --SLHRPKEARIMYE 342 (436)
Q Consensus 330 --A~GR~~EAiaLYk 342 (436)
..|+.++|+..|+
T Consensus 123 ~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 123 AIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHcccHHHHHHHHH
Confidence 7778775555554
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=94.29 E-value=0.56 Score=49.34 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
...+..+.++.|++-. .++|..-. ..+..|..++..|++.+|+.+|++|+.+-|.... +.++++.++-..|
T Consensus 350 ~~g~~~~A~~~~~~Al--~l~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~----~~~~~~~~~~~~g 420 (553)
T PRK12370 350 IHSEYIVGSLLFKQAN--LLSPISAD---IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA----AGITKLWITYYHT 420 (553)
T ss_pred HccCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcc
Confidence 4456777888888765 44555433 2466789999999999999999999888776432 2233333344467
Q ss_pred ChHHHHHHHHHHh
Q 013807 333 RPKEARIMYEKLQ 345 (436)
Q Consensus 333 R~~EAiaLYkkL~ 345 (436)
+.++|++.|+++.
T Consensus 421 ~~eeA~~~~~~~l 433 (553)
T PRK12370 421 GIDDAIRLGDELR 433 (553)
T ss_pred CHHHHHHHHHHHH
Confidence 7777777777763
No 61
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.19 Score=51.08 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..++.+.+++.+++.|++.+|.+.|-.|++..+.+ +++.+-||.||-+.|+.++|.+++.+|-
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 66779999999999999999999999999999877 8899999999999999999999999984
No 62
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.98 E-value=0.097 Score=37.22 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
++.+.||.+|...|+.++|+.+|+++. .||+-
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467889999999999999999999995 68864
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.97 E-value=0.41 Score=54.68 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
..+..|..++..|+|.+|+.+|++|++.-+... .+.+.|+.+|...|+.++|+..|+++. .+|+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345679999999999999999999999876443 577789999999999999999999975 56664
No 64
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.92 E-value=0.55 Score=43.10 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=78.0
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC-----------ChHHHHHHHH
Q 013807 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-----------RPKEARIMYE 342 (436)
Q Consensus 274 p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-----------R~~EAiaLYk 342 (436)
|...-.-+..|..|...+..|+|.+|+..|+..++.-|... .-..+..++++|+-... ...+|+..++
T Consensus 36 P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~ 114 (203)
T PF13525_consen 36 PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE 114 (203)
T ss_dssp TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHH
Confidence 33334445678999999999999999999999998776654 55789999999875443 3458999999
Q ss_pred HHh-cCCCHHHHHHHHHHHHHHH---hhhhhhhcccCCCCcchHH
Q 013807 343 KLQ-SHPNALVSKRARQFMFSFQ---AMEMMKVRSSSDKNTDYRN 383 (436)
Q Consensus 343 kL~-sHP~~eVrKQAkrLlyiLE---Ap~llKv~~~~~~~t~Yd~ 383 (436)
.|. ++|+-.-...|++.|--+. |-.-+.|...|.....|..
T Consensus 115 ~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 115 ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHH
T ss_pred HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 996 8999999999988766655 3334445555666666654
No 65
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.89 E-value=0.49 Score=47.24 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR 357 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk 357 (436)
.....|=.|+..|.+|+|.+|-..|..+....+-.. =-=++-|-|++|+..+|++++|.+.|++|. +.|.-.--++|+
T Consensus 177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 334455569999999999999999999988765444 345778899999999999999999999995 799999888888
Q ss_pred HHH
Q 013807 358 QFM 360 (436)
Q Consensus 358 rLl 360 (436)
.-+
T Consensus 256 ~~~ 258 (262)
T COG1729 256 VAL 258 (262)
T ss_pred HHH
Confidence 654
No 66
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.83 E-value=0.46 Score=41.94 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (436)
+..+.+.-|++-+.+.-++. ......+..|..++..|+|.+|+.+|++|+..-+.. ......++.||...|+..
T Consensus 50 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 50 EYAEALENYEEALKLEEDPN--DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKA 123 (172)
T ss_pred CHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChH
Confidence 34444555555443333322 223456788999999999999999999999986544 344566788888877743
Q ss_pred H
Q 013807 336 E 336 (436)
Q Consensus 336 E 336 (436)
.
T Consensus 124 ~ 124 (172)
T PRK02603 124 E 124 (172)
T ss_pred h
Confidence 3
No 67
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.57 E-value=0.39 Score=54.79 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (436)
...|..++..|++.+|+..|++|+..-|.. ..+.+.|+.+|...|+.++|+++|+++. .+|+-.
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 456888999999999999999999887654 3467899999999999999999999985 588543
No 68
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.24 Score=52.02 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch-----------hHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
+.+...=..|..+|.+|+|..|...||+|+..+....-.- =-+-+.||+||--+++..+||..|.+.-.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3344444579999999999999999999988887333222 23557899999999999999999999876
Q ss_pred CCCHHHH
Q 013807 347 HPNALVS 353 (436)
Q Consensus 347 HP~~eVr 353 (436)
|-..+++
T Consensus 286 ~~~~N~K 292 (397)
T KOG0543|consen 286 LDPNNVK 292 (397)
T ss_pred cCCCchh
Confidence 6655554
No 69
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.35 E-value=0.18 Score=32.75 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (436)
+--+..|..+|..|+|.+|+.+|++|+.+-+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3456778888888888888888888887654
No 70
>PRK15331 chaperone protein SicA; Provisional
Probab=93.26 E-value=0.22 Score=46.75 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.+.-+..|..|-.+|..|+|.+|..+|.-.+-.=.-+.+ -.|-|+.|++..+++++|+.+|---
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~----Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD----YTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778999999999999999999999876554444444 3566777788888777777777643
No 71
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.82 E-value=0.68 Score=53.13 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=31.5
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
|..+.+.|++.+|+.+|++|++.-|.. .++...+++||...|+.++|++.|++.. -.|+
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P~~----~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLPDD----PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 444455555555555555555543322 3455566666666666666666666653 3443
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=92.58 E-value=0.54 Score=51.50 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
+-.+-.+..++..|++.+|+..|++++...|.+. .+.+.+|++|...|+.++|+.+|++.. -+|+-
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 3446678888888999999999999888877764 577888888888888888888888885 46763
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.53 E-value=0.25 Score=53.60 Aligned_cols=106 Identities=20% Similarity=0.266 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCC-----------
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHP----------- 348 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP----------- 348 (436)
.+.=..|...|..|+|.+|+.+|..|+++++--+.+ --..|-||+++|..++-|..|.+- .-.|
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF----YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF----YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh----hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 334456999999999999999999999999874211 112566788888777777777553 2222
Q ss_pred -------------------------CHHHHHHHHHHHHHHHhhhhhh--hcc---c-CCCCcchHHHHHHhhcc
Q 013807 349 -------------------------NALVSKRARQFMFSFQAMEMMK--VRS---S-SDKNTDYRNFFEAFVED 391 (436)
Q Consensus 349 -------------------------~~eVrKQAkrLlyiLEAp~llK--v~~---~-~~~~t~Yd~Yf~~f~~~ 391 (436)
|.++--.+.|+| =.+||++.+ .+. . +|..+.-.+||+.|..+
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~L-kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVL-KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHH-HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 222333333332 234554443 332 2 67899999999999986
No 74
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.39 E-value=0.29 Score=47.04 Aligned_cols=89 Identities=18% Similarity=0.130 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhc-CC
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSL-HR 333 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~-GR 333 (436)
..+....|.+-.-+.........+-..|..+-..+..+++.+|+.+|++|.+..-... ...+.+...+|..|+.. |+
T Consensus 51 ~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d 130 (282)
T PF14938_consen 51 WEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGD 130 (282)
T ss_dssp CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3455566666554444444556667788888888899999999999999988764443 34467888899999999 99
Q ss_pred hHHHHHHHHHHh
Q 013807 334 PKEARIMYEKLQ 345 (436)
Q Consensus 334 ~~EAiaLYkkL~ 345 (436)
.++|+..|++-.
T Consensus 131 ~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 131 YEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998863
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.31 E-value=0.45 Score=45.16 Aligned_cols=61 Identities=13% Similarity=-0.030 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
-....|..++..|+|.+|+..|+++++.-+.. ..+...++.+|...||.++|+.+|++...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 34567889999999999999999999988776 34566688899999999999999998753
No 76
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=92.11 E-value=0.96 Score=49.58 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (436)
.+..+..+.+..|++-. .++|..-. ..+..|..+.+.|++.+|+.+|+++++.-|.+.. .+.++.+|...
T Consensus 60 ~~~g~~~~A~~~~~~al--~~~P~~~~---a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-----~~~la~~l~~~ 129 (765)
T PRK10049 60 RNLKQWQNSLTLWQKAL--SLEPQNDD---YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-----LLALAYVYKRA 129 (765)
T ss_pred HHcCCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHC
Confidence 33444556666666543 34454422 2356788889999999999999999988655433 66689999999
Q ss_pred CChHHHHHHHHHHh-cCCCHHH
Q 013807 332 HRPKEARIMYEKLQ-SHPNALV 352 (436)
Q Consensus 332 GR~~EAiaLYkkL~-sHP~~eV 352 (436)
|+.++|+..|+++. .+|+...
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~ 151 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQ 151 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999985 6886543
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=91.85 E-value=1.6 Score=42.22 Aligned_cols=70 Identities=10% Similarity=-0.072 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (436)
..++--+..|..+...|++.+|+..|++|+++-|.. ..+...++.+|...|+.++|+..|++.. ..|+-.
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 345568889999999999999999999999987654 5788899999999999999999999985 467643
No 78
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.85 E-value=0.87 Score=41.93 Aligned_cols=91 Identities=18% Similarity=0.115 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHH-HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHH
Q 013807 246 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEK-ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW 324 (436)
Q Consensus 246 teEEkaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~ee-a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL 324 (436)
+.++.+++-+++...|..|+++. .+++++. ..+.|.-+...|++..|++.|+.+.+.+ +-.|=.+.|++
T Consensus 8 ~~~~~~~~~~~Le~elk~~~~n~-------~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l 77 (177)
T PF10602_consen 8 TKAKNAEELEKLEAELKDAKSNL-------GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCL 77 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHH
Confidence 44555777888888999999777 4555554 5567999999999999999999999987 66777777776
Q ss_pred HHHHHh--cCChHHHHHHHHHHhc
Q 013807 325 SICQDS--LHRPKEARIMYEKLQS 346 (436)
Q Consensus 325 AiAydA--~GR~~EAiaLYkkL~s 346 (436)
.++-=+ .|+.........+..+
T Consensus 78 ~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 78 NVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 655433 3455555555555543
No 79
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.75 E-value=0.74 Score=45.81 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc-h-------------------------hHHHHHH-------
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL-H-------------------------GLAALQW------- 324 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L-G-------------------------GeaqLwL------- 324 (436)
+++..+=.+|..+|..|.|.+|...|..|++.|+.-+.- - --++||-
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 455667778999999999999999999999999876531 1 1233443
Q ss_pred --HHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807 325 --SICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 325 --AiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (436)
|-+|+.+...++|+.=|++|. +.|...
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 788999999999999999996 777654
No 80
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=91.65 E-value=0.59 Score=47.05 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHH--HHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEK--VMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEk--A~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 343 (436)
|.-.+..|..++..|+|.+|.++||+ +++.-+ ..++...|+.+|+..|++++|..+|++
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----DANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66677889999999999999999995 444432 345667899999999999999999996
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.55 E-value=1 Score=44.94 Aligned_cols=72 Identities=21% Similarity=0.127 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHH
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALV 352 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eV 352 (436)
.+..+..++.|..+|++|++..|...||+|++.=+- +. .+.+-+|..|+..|..+-|...|++-. .||+ .+|
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~---~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YY---LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cH---HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch
Confidence 356678899999999999999999999999986543 33 355667889999999999999999974 5664 444
No 82
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=91.53 E-value=1 Score=48.79 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhh----hhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKE----ALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~----AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (436)
+..+.++.|++-.. .+|.. ....+..|..++..|+|.+ |+.+|++|++.-|.. ..+.+.|+.+|...
T Consensus 227 ~~~eA~~~~~~al~--~~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~ 297 (656)
T PRK15174 227 KYQEAIQTGESALA--RGLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN----VRIVTLYADALIRT 297 (656)
T ss_pred CHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHC
Confidence 34445555555442 23432 3345668999999999986 899999999887642 47788899999999
Q ss_pred CChHHHHHHHHHHh-cCCCHH
Q 013807 332 HRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 332 GR~~EAiaLYkkL~-sHP~~e 351 (436)
|+.++|+..|++.. .+|+..
T Consensus 298 g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999985 677743
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=91.50 E-value=0.85 Score=49.12 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=49.3
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcc----cCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
..|..++..|+|.+|+..|++|++..- ....-=+.+-..||.+|-..|+++||...|+.-
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 489999999999999999999987653 223333788899999999999999987777653
No 84
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.07 E-value=1 Score=44.89 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (436)
-+.+.|++|...++.|.|.+|+.+||++...- +.|++.=.++|-|+-|+=-.+..++|++.-+.-. .||
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999987544 4567779999999999999999999999887764 344
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=91.00 E-value=0.51 Score=47.14 Aligned_cols=56 Identities=23% Similarity=0.200 Sum_probs=50.6
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.|+.++..|+|.+|+..|-+|..+-+... ++-+-|++|||-+||+++|..-|.|..
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~----~~~~~lgaaldq~Gr~~~Ar~ay~qAl 161 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDW----EAWNLLGAALDQLGRFDEARRAYRQAL 161 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCCh----hhhhHHHHHHHHccChhHHHHHHHHHH
Confidence 89999999999999999999998877664 556778999999999999999999974
No 86
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.00 E-value=0.46 Score=31.32 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (436)
+.-+..|..++..|+|.+|+..|++|+++-+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3456788889999999999999999887654
No 87
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.64 E-value=1.2 Score=51.32 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
+..-.|..|..++..|+|.+|+..|++|++.-|.+ ..+.+.|+.+|=..|+.++|+..+++.
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n----~~~~~~LA~~yl~~g~~~~A~~~~~kA 104 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN----IPLTLYLAEAYRHFGHDDRARLLLEDQ 104 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444333 233344444444444444444444444
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=90.59 E-value=1.5 Score=47.39 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc-CccchhHHHHH---HHHHHHhcCChHHHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF-KSELHGLAALQ---WSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~-~S~LGGeaqLw---LAiAydA~GR~~EAiaLYkkL 344 (436)
..+......+..+..+|+|++|.++++.||..... -...|+++... ++..+++.++.++|+.+|++.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 44555666799999999999999999999988765 23566777765 678899999999999999865
No 89
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=89.80 E-value=2.1 Score=40.87 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--CccchhHHHHHHHHHHHhcC
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~G 332 (436)
.-+...+..|++.-. .+-...-.++.|..+|..|+|..|+.+|+.+...... =..|-..+-..|.-|+-.+|
T Consensus 159 ~lL~~A~~~f~~~~~------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 159 ELLEKAYEQFKKYGQ------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 334455556664332 3444455788999999999999999999999332211 14667788888999999999
Q ss_pred ChHHHHHHHHHHhcC
Q 013807 333 RPKEARIMYEKLQSH 347 (436)
Q Consensus 333 R~~EAiaLYkkL~sH 347 (436)
+.++.+..|=+|-+|
T Consensus 233 ~~~~~l~~~leLls~ 247 (247)
T PF11817_consen 233 DVEDYLTTSLELLSR 247 (247)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999888765
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=89.65 E-value=1.8 Score=48.87 Aligned_cols=106 Identities=12% Similarity=0.142 Sum_probs=74.8
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE 364 (436)
.|+.+...|+|.+|++.|+++++.-|.+..+- +-|+++|-..++.++|+..++++. ..|. .+-. ..+.|+..
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l----~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~layL~~ 180 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLI----SGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLSYLNR 180 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHHHHHH
Confidence 37788899999999999999999998885433 466888888999999999999997 5665 3333 56677772
Q ss_pred -------hhhhhh-hcccCCC-CcchHHHHHHhhcccccccCc
Q 013807 365 -------AMEMMK-VRSSSDK-NTDYRNFFEAFVEDKTNYPLQ 398 (436)
Q Consensus 365 -------Ap~llK-v~~~~~~-~t~Yd~Yf~~f~~~kt~y~~~ 398 (436)
|.+..+ +-...|. .+-|..|..+.+..+...++.
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 222111 1111454 445688888888777665543
No 91
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.58 E-value=2.1 Score=45.46 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=76.9
Q ss_pred hcCCcCCcchHHHHH---HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---------------hHHHHHHHHHH
Q 013807 267 SVGLNVDPKLKSECE---KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------GLAALQWSICQ 328 (436)
Q Consensus 267 ~~Gl~Vdp~~k~e~e---ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---------------GeaqLwLAiAy 328 (436)
++-|.||+=..+... +.-+.|..+|.+|+|.+|+..|-++|+.-+-+--++ .|+-..+|+++
T Consensus 81 ~~dL~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 81 KQDLPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hccCCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 467788876554333 234569999999999999999999999988777666 34444455544
Q ss_pred ---------------HhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHhhhhhhhc
Q 013807 329 ---------------DSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFMFSFQAMEMMKVR 372 (436)
Q Consensus 329 ---------------dA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLlyiLEAp~llKv~ 372 (436)
.++|...||..=|+..- -.| +.+++|+..+|.=-+|+-=..|.+
T Consensus 161 d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT 221 (536)
T KOG4648|consen 161 DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKST 221 (536)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcC
Confidence 47888999999998764 344 678999999887766665444433
No 92
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.82 E-value=0.62 Score=29.87 Aligned_cols=30 Identities=10% Similarity=0.356 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (436)
..|..|..++..|++.+|+..|+.+++.-|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 578999999999999999999999998765
No 93
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=0.94 Score=48.49 Aligned_cols=131 Identities=19% Similarity=0.263 Sum_probs=90.3
Q ss_pred hhcCCcCCcchH---------HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC---------------ccch----
Q 013807 266 KSVGLNVDPKLK---------SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK---------------SELH---- 317 (436)
Q Consensus 266 k~~Gl~Vdp~~k---------~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~---------------S~LG---- 317 (436)
..++|++||.-. ..|+..=..|..+|..|.|+.|.+.|-.|+..-|-+ ++||
T Consensus 226 f~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~e 305 (486)
T KOG0550|consen 226 FQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLRE 305 (486)
T ss_pred HhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchh
Confidence 356788888744 334455567999999999999999999987765543 3444
Q ss_pred ---------------hHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhh------hhhhccc-
Q 013807 318 ---------------GLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMFSFQAME------MMKVRSS- 374 (436)
Q Consensus 318 ---------------GeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLlyiLEAp~------llKv~~~- 374 (436)
=++-|.-|.||.+++..++|..=|++. ++.-..++|+--++.-..|+=.+ .+.++..
T Consensus 306 aisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~a 385 (486)
T KOG0550|consen 306 AISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNA 385 (486)
T ss_pred hhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhc
Confidence 134455677888888888888888877 45556788877777777777221 1223333
Q ss_pred --CCCCcchHHHHHHhhccccccc
Q 013807 375 --SDKNTDYRNFFEAFVEDKTNYP 396 (436)
Q Consensus 375 --~~~~t~Yd~Yf~~f~~~kt~y~ 396 (436)
.+++-.|+.-.-.|.-+++.-.
T Consensus 386 s~~eikkayrk~AL~~Hpd~~ags 409 (486)
T KOG0550|consen 386 SDDEIKKAYRKLALVHHPDKNAGS 409 (486)
T ss_pred ccchhhhHHHHHHHHhCCCcCcch
Confidence 3477788888888877776655
No 94
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.43 E-value=0.88 Score=29.75 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (436)
+.-+..|+.++..|++.+|+.+|++|++.-+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4456778888888888888888888876543
No 95
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=87.92 E-value=1.3 Score=44.68 Aligned_cols=58 Identities=3% Similarity=-0.212 Sum_probs=40.3
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH 347 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH 347 (436)
.++.++..|+|.+|+..++++.+.-|.+. .+...++.+|-..|+.++|+.++.+|.++
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 36667777777777777777766665544 45566677777777888888777777643
No 96
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.58 E-value=2.1 Score=42.88 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.|+.+-.++..|+|..|...|..=++.-| +|.+-..+..||.-||=+.|+.++|...|..+. .||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP-~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP-NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence 89999999999999999999999888875 456778999999999999999999999999995 5665
No 97
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.38 E-value=1.2 Score=46.87 Aligned_cols=56 Identities=18% Similarity=0.035 Sum_probs=39.0
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.+.-...-..|++|+.+-++|++.=+.|. .+-..-..||-++|..+.|+..+++.+
T Consensus 263 lA~c~lKl~~~~~Ai~~c~kvLe~~~~N~----KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 263 LAACYLKLKEYKEAIESCNKVLELDPNNV----KALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 35555666777777777777777766554 345566777777777777777777774
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.22 E-value=3.5 Score=45.04 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=58.4
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 271 ~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.++|++ +++.-..|..+|..|+|+.||.+|.+|+..-|-.-+ .--+.|-||-.+|...+|++=|+++. -||+
T Consensus 352 ~~~pe~---A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~----lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 352 YINPEK---AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR----LYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred hhChhH---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 456666 344555599999999999999999999888755433 34467899999999999999999986 5876
Q ss_pred H
Q 013807 350 A 350 (436)
Q Consensus 350 ~ 350 (436)
.
T Consensus 425 ~ 425 (539)
T KOG0548|consen 425 F 425 (539)
T ss_pred H
Confidence 4
No 99
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=86.75 E-value=1.5 Score=45.96 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
-+-.|+.++..|.|..||+.||.|.+. +-.+=|||.--|..||..+|+.++.+.--+..
T Consensus 217 si~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 217 SIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred hhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455699999999999999999998764 45788999999999999999977766544433
No 100
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.66 E-value=2.4 Score=34.84 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=48.0
Q ss_pred HHHhCCchhhhhhHHHHHHhhcccCccch-----hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 289 SLMDSGKLKEALPFYEKVMNKMVFKSELH-----GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.+..+|.|.+|++.|....+......... ..+.+.+|.++-..|+.++|+..++...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46789999999999999988876665544 5778899999999999999999998764
No 101
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=86.50 E-value=1.9 Score=42.63 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHH--HHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL--QWSICQDSLHRPKEARIMYEKL-QSHPN 349 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqL--wLAiAydA~GR~~EAiaLYkkL-~sHP~ 349 (436)
..+..|..|..+-+-|+|.+|+++|++++.-+ +.|+.+| -+|.|+=++++..+|+..-++| ..||.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~-----fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGI-----FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-----cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 45678899999999999999999999987543 4455444 4567778889999999998888 45654
No 102
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.04 E-value=2 Score=31.84 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCC-chhhhhhHHHHHHhhc
Q 013807 251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSG-KLKEALPFYEKVMNKM 310 (436)
Q Consensus 251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerG-kYr~AV~~lEkA~~~v 310 (436)
..+..+..+.+..|.+-+ .+||.. ..-.+..|..++..| +|.+|+..|++|+++-
T Consensus 13 ~~~~~~~~~A~~~~~~ai--~~~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 13 YFQQGDYEEAIEYFEKAI--ELDPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHTTHHHHHHHHHHHHH--HHSTTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHH--HcCCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 455677888888888766 556664 345888999999999 8999999999998764
No 103
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.79 E-value=1.1 Score=30.84 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=15.9
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHh
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMN 308 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~ 308 (436)
..|..++..|+|.+|+++||+++.
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777777777777777553
No 104
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=85.78 E-value=3.7 Score=38.28 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cC----CCHHHHHHHHH
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SH----PNALVSKRARQ 358 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sH----P~~eVrKQAkr 358 (436)
|-.|--.=..|+|.+|+..|+.|..+-+ =.-+.-..++.||=++|+.++|+.-.+.-. .+ -+.+|+++|+.
T Consensus 73 ~gLG~~~Q~~g~~~~AI~aY~~A~~L~~----ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 73 FRLGECCQAQKHWGEAIYAYGRAAQIKI----DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 3446666778999999999999987764 345677889999999999999998888664 33 47789999999
Q ss_pred HHHHH
Q 013807 359 FMFSF 363 (436)
Q Consensus 359 LlyiL 363 (436)
+|-.|
T Consensus 149 ~L~~l 153 (157)
T PRK15363 149 MLQQL 153 (157)
T ss_pred HHHHh
Confidence 88655
No 105
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=85.78 E-value=7.5 Score=33.04 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh-------------------HHHHHHHHHHHhcCChHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------------LAALQWSICQDSLHRPKEAR 338 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-------------------eaqLwLAiAydA~GR~~EAi 338 (436)
.+++..+..|..+...|.-.++++.|++|+++.... -|.| .+...++.++...|+.++|+
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~-~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGD-FLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 467778888889999999999999999998877533 2221 34556777888999999999
Q ss_pred HHHHHHh-cCCCHHHH
Q 013807 339 IMYEKLQ-SHPNALVS 353 (436)
Q Consensus 339 aLYkkL~-sHP~~eVr 353 (436)
.+|+++. .+|.-+--
T Consensus 83 ~~~~~~l~~dP~~E~~ 98 (146)
T PF03704_consen 83 RLLQRALALDPYDEEA 98 (146)
T ss_dssp HHHHHHHHHSTT-HHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999996 79987643
No 106
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=85.55 E-value=1.9 Score=34.18 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcc--cCccchhHHHHHHHHHHHhcCChHHHHHHH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMY 341 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLY 341 (436)
+++..|..+|+.|+|-+|=+.||.+-...+ .+.-+-|.+|+--|..+-..|+.+-|..|+
T Consensus 1 ~~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 1 EALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 478899999999999999999999865444 556788999999999888899988888775
No 107
>PRK14574 hmsH outer membrane protein; Provisional
Probab=84.91 E-value=3.8 Score=46.48 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh
Q 013807 251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS 330 (436)
Q Consensus 251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA 330 (436)
..|.-++.+.+..+++-. ..+|..-.. .++..+.+...|++.+|+.++|++++ ...+.-...+-+|.+|-.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL--~~~P~~~~a---v~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 44 RARAGDTAPVLDYLQEES--KAGPLQSGQ---VDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRN 114 (822)
T ss_pred HHhCCCHHHHHHHHHHHH--hhCccchhh---HHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHH
Confidence 344445556666666543 444443211 11555666677999999999999882 223334555566889999
Q ss_pred cCChHHHHHHHHHHh-cCCCH
Q 013807 331 LHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 331 ~GR~~EAiaLYkkL~-sHP~~ 350 (436)
.|+.++|+.+|+++. .+|+-
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n 135 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTN 135 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999995 56653
No 108
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=84.75 E-value=7.4 Score=39.31 Aligned_cols=71 Identities=17% Similarity=0.093 Sum_probs=36.2
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQF 359 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL 359 (436)
.|+.+..+|++.+|..+|+++.+..+.. .+ .+.+.++..+-..|+.++|++..+.+. .+| |+.+.+...++
T Consensus 124 aA~aa~~~g~~~~A~~~l~~a~~~~p~~-~l--~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~ 196 (409)
T TIGR00540 124 AAEAAQQRGDEARANQHLEEAAELAGND-NI--LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEA 196 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcC-ch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3555666666666666666665433211 11 123334555555666666666666663 455 33444433333
No 109
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=84.36 E-value=4.9 Score=29.57 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (436)
+..+..+.++.|+.=+. .+|. ..+..+..|..++.+|+|.+|+.+|+.+++.-|.
T Consensus 9 ~~g~~~~A~~~~~~~l~--~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALK--QDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HCTHHHHHHHHHHHHHC--CSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HcCCHHHHHHHHHHHHH--HCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34456666666665553 3354 4555888999999999999999999999987654
No 110
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=84.35 E-value=2.6 Score=48.30 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.+.+.--++..+.+|+.|+|.+|+++|-.++..-.-+. +-+-.-+|-||-.+|+.++||.-|++.
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~---~~vw~~~a~c~~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN---AFVWYKLARCYMELGEYEEAIEFYEKV 475 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc---hhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445556666777777777777776666554433333 222333566677777777777666665
No 111
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.95 E-value=2.1 Score=28.43 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHh
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMN 308 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~ 308 (436)
...|..++.+|+|.+|+.++++|++
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3445556666666666666665544
No 112
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=82.15 E-value=3.2 Score=31.59 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
...+...+..|......|+|.+|+++|++|++..
T Consensus 43 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 43 PDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3557788899999999999999999999998763
No 113
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=82.13 E-value=5.7 Score=36.85 Aligned_cols=95 Identities=18% Similarity=0.284 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--cCCcch-------HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch
Q 013807 247 AEARAAKEERTRQLLAAYKKSVGL--NVDPKL-------KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 317 (436)
Q Consensus 247 eEEkaaR~~rtke~LaaYrk~~Gl--~Vdp~~-------k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG 317 (436)
+-||.-.+.-..+.-+.||+-+-+ +|-++. .+-|-..| ...+-.-|+|.+++..-+.|+-..+++-+|+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~L--s~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGL--SGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHH--HHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHH--HHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 335555555666667777776532 222221 12233322 4456788999999999999999999999998
Q ss_pred h-HHHHH------HHHHHHhcCChHHHHHHHHH
Q 013807 318 G-LAALQ------WSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 318 G-eaqLw------LAiAydA~GR~~EAiaLYkk 343 (436)
- +-.+| -+.|++.+||.+||+.-|+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3 33344 57899999999999988765
No 114
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=81.50 E-value=2.4 Score=29.18 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 013807 322 LQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkk 343 (436)
..|+.+|...|+.++|+.+|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4689999999999999999998
No 115
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.49 E-value=2.2 Score=30.28 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE 315 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~ 315 (436)
..+..|..++..|++.+|+..|+++++..|.+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 3567799999999999999999999999887753
No 116
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=80.91 E-value=16 Score=28.34 Aligned_cols=55 Identities=33% Similarity=0.388 Sum_probs=31.0
Q ss_pred HHHhCCchhhhhhHHHHHHhhcccC-ccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 289 SLMDSGKLKEALPFYEKVMNKMVFK-SELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 289 ~AmerGkYr~AV~~lEkA~~~v~~~-S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.++..|++..|+..|+++.. +... .... ...+.+.-.+...++.++|+..+.+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELA-EALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchH-HHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 66777777777777777755 3332 1222 222222222666677777777777765
No 117
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.66 E-value=3.1 Score=27.60 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 320 AALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
+...|+++|-..|+.++|+.+|++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4567999999999999999998876
No 118
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.17 E-value=3.9 Score=26.39 Aligned_cols=31 Identities=26% Similarity=0.097 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 319 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
++-.+++.+|-..|+.++|+..|++.. ..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456789999999999999999999985 3443
No 119
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=79.56 E-value=2.9 Score=47.92 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
-|..|.-+|+.|.|.+|+++||+|+...|.+. .+.+-||..|+-.|++++|...-+++.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~----D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNL----DARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch----hhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 46779999999999999999999999987654 688999999999999999987777754
No 120
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.49 E-value=7.7 Score=43.33 Aligned_cols=95 Identities=23% Similarity=0.296 Sum_probs=69.9
Q ss_pred HHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHH
Q 013807 261 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM 340 (436)
Q Consensus 261 LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL 340 (436)
+.-||+.++ |||.-.- ..|=.|..++..|+|..|.=+|++|++.=|.++.+ .--+.+.|+.+|+.++|+.+
T Consensus 475 ~~~fr~Al~--~~~rhYn---AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi----~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 475 MKSFRKALG--VDPRHYN---AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI----LCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred HHHHHhhhc--CCchhhH---HHHhhhhheeccchhhHHHHHHHhhhcCCccchhH----HhhhhHHHHHhhhhhHHHHH
Confidence 345666554 4555443 47888999999999999999999999999988854 33456779999999999999
Q ss_pred HHHHhc--CCCHHHHHHHHHHHHHHH
Q 013807 341 YEKLQS--HPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 341 YkkL~s--HP~~eVrKQAkrLlyiLE 364 (436)
|++-.. --++-.+=+-.++||+++
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHhhc
Confidence 998742 223333334467777764
No 121
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=79.48 E-value=7.2 Score=42.11 Aligned_cols=64 Identities=25% Similarity=0.275 Sum_probs=49.9
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
.+=..+.+-+.|+|.+|+++|++....|.-+. .+.-..|.+|-.+||.+||...|+.|. +.|.-
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~----~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn 71 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKL----AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN 71 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 34445677889999999999999766664433 234456889999999999999999996 67754
No 122
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.41 E-value=32 Score=32.39 Aligned_cols=96 Identities=20% Similarity=0.241 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
..+..+|++-| -+.|+..+. .+=.|..++.||++.+|+..|+.+.+. +...+.+.--+|.||.+.|..
T Consensus 27 ~D~e~lL~ALr-----vLRP~~~e~---~~~~~~l~i~r~~w~dA~rlLr~l~~~----~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 27 DDAEALLDALR-----VLRPEFPEL---DLFDGWLHIVRGDWDDALRLLRELEER----APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHHH-----HhCCCchHH---HHHHHHHHHHhCCHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHcCCh
Confidence 34455555544 344665544 566799999999999999999986443 344455566679999999986
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013807 335 KEARIMYEKLQSHPNALVSKRARQFMFS 362 (436)
Q Consensus 335 ~EAiaLYkkL~sHP~~eVrKQAkrLlyi 362 (436)
.==+--.+-|.+.+++..+.-.++|+=.
T Consensus 95 ~Wr~~A~evle~~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 5444445557788899998888887644
No 123
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.32 E-value=6.5 Score=33.45 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM 340 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL 340 (436)
.++.+.++.|..+|+.-+.++||.-+++|+..+.... -==.+-=+|+.||.-.|+..+.++-
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999999986633 1113444788999999999998763
No 124
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.63 E-value=2.8 Score=27.30 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 013807 320 AALQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkk 343 (436)
+.+.|+.+|-..|+.++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567889999999999999988864
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=78.33 E-value=6.4 Score=42.67 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=45.3
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.|+.+++.+++.+|.+.|.+|+.+-|-+ ..++|.++.+|=..|+.+|||.+-..+.
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~----~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNS----PLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 4788888889999999888888887665 5567788888888888888888776664
No 126
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.20 E-value=7.6 Score=41.68 Aligned_cols=110 Identities=24% Similarity=0.237 Sum_probs=76.7
Q ss_pred cccCCCcccCCCCccCcHHHHH-HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHh
Q 013807 230 KTFGGGRTIRPGDVLETAEARA-AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMN 308 (436)
Q Consensus 230 kayGGGR~IrpGe~lEteEEka-aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~ 308 (436)
++=|||.+||-|...-.=|+-. .|+=.-.-.|-.++. ++|.+.+.. .-+=.|--+|--|.|++|+.-|+-+|+
T Consensus 12 ~~~g~~~~~kkarK~P~Ledfls~rDytGAislLefk~----~~~~EEE~~--~~lWia~C~fhLgdY~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 12 KRNGAGPTIKKARKMPELEDFLSNRDYTGAISLLEFKL----NLDREEEDS--LQLWIAHCYFHLGDYEEALNVYTFLMN 85 (557)
T ss_pred cccCCCCcchhhhcCchHHHHHhcccchhHHHHHHHhh----ccchhhhHH--HHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 5668888898887753333333 333333334445553 555555433 344567788999999999999999998
Q ss_pred hcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 013807 309 KMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN 349 (436)
Q Consensus 309 ~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 349 (436)
.-..+ ||+-+.||-|+==+|...||.++-.+....|-
T Consensus 86 ~~~~~----~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL 122 (557)
T KOG3785|consen 86 KDDAP----AELGVNLACCKFYLGQYIEAKSIAEKAPKTPL 122 (557)
T ss_pred cCCCC----cccchhHHHHHHHHHHHHHHHHHHhhCCCChH
Confidence 55444 55558899999999999999998887766653
No 127
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.12 E-value=5.5 Score=38.03 Aligned_cols=73 Identities=25% Similarity=0.254 Sum_probs=53.8
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHH--HHHHHHhcCChHHHHHHHHHHhcCCCH----HHHHHHHHH
Q 013807 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSLHRPKEARIMYEKLQSHPNA----LVSKRARQF 359 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~GR~~EAiaLYkkL~sHP~~----eVrKQAkrL 359 (436)
|+...+.--|+.|+++|++|.+.-.+...--.++.+- ++--+--+|+.+||+..+.++..|+.. .+..+||.+
T Consensus 132 ~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 132 GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 4556666679999999999999888755422333333 566678899999999999999877654 556677665
No 128
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.03 E-value=2.6 Score=24.25 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhh
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNK 309 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (436)
+..|..++..|++.+|+..|+.++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45567777777777777777776653
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=77.05 E-value=7.9 Score=40.55 Aligned_cols=68 Identities=15% Similarity=0.005 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 351 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~e 351 (436)
++-...+++.++.+|+|+.|++...+|+...|..- +.-..||.||-.+|+.++|+.-...+-.+|+.+
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f----~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF----ETWYQLAECYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 55566689999999999999999999998876433 455669999999999999997766665555544
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=76.44 E-value=4.8 Score=46.46 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=49.5
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccCccch------------h---HHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------G---LAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------G---eaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
-.|-.++.+|+|.+|.-. .+.+..+.++... | .+-.-||+|||.+|+.++|+++|+++..
T Consensus 70 ~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 70 ISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred HHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 348889999999999877 8888888887211 1 4677899999999999999999999963
No 131
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=75.58 E-value=12 Score=42.23 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHH----HhhcccCccchhHHHHHHHHHHHhcC
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKV----MNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA----~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
--+.|++|++...-++++...+.-+..+-+-+...+.|.++.|+++|.+- .+.+++ +|+ -|.-+--++
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~-----~e~---ka~l~~kl~ 233 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAF-----EET---KADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHH-----hhh---HHHHHHHHh
Confidence 35678999988887888999999999999999999999999999999874 333322 222 355677889
Q ss_pred ChHHHHHHHHHHh-cCCC-HHHHHHHHHHHH
Q 013807 333 RPKEARIMYEKLQ-SHPN-ALVSKRARQFMF 361 (436)
Q Consensus 333 R~~EAiaLYkkL~-sHP~-~eVrKQAkrLly 361 (436)
|.+||..+|+.|. +.|+ ..-..+....++
T Consensus 234 ~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred hHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 9999999999996 6775 445555555554
No 132
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.14 E-value=8.9 Score=41.99 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
+.|-+.+.+||.-+ +|+|..... =|-.||.+=--++--=|+=+|.+|.+.-|-.|++ -.-|.-||+.++|.
T Consensus 378 KNt~AAi~sYRrAv--di~p~DyRA---WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRl----w~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 378 KNTHAAIESYRRAV--DINPRDYRA---WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRL----WVALGECYEKLNRL 448 (559)
T ss_pred cccHHHHHHHHHHH--hcCchhHHH---HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHH----HHHHHHHHHHhccH
Confidence 34566778888665 777776544 4666777666666677899999999999888864 22267899999999
Q ss_pred HHHHHHHHHHhc
Q 013807 335 KEARIMYEKLQS 346 (436)
Q Consensus 335 ~EAiaLYkkL~s 346 (436)
+|||.-|++-.-
T Consensus 449 ~eAiKCykrai~ 460 (559)
T KOG1155|consen 449 EEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 133
>PRK04841 transcriptional regulator MalT; Provisional
Probab=74.64 E-value=9.7 Score=41.45 Aligned_cols=63 Identities=11% Similarity=-0.064 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc--hhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--HGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L--GGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
....|..+...|++.+|+.+|+++++........ -..+.++++++|...|+.++|+...++..
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567888999999999999999999875332222 23577899999999999999999988774
No 134
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=74.40 E-value=7 Score=42.82 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=28.3
Q ss_pred ccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCCH
Q 013807 314 SELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPNA 350 (436)
Q Consensus 314 S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~~ 350 (436)
++..=-+.--||||.-.+||.+|||.|++.|.+ +|..
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~ 292 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL 292 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc
Confidence 333334555699999999999999999999964 7753
No 135
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=74.28 E-value=7.6 Score=41.25 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
-.+..|+.+|.++.+.+|-.+||.|+.+ +...+.-.|+|-+|++.|+..+|.++++.-
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~-----~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL-----RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4567799999999999999999988765 445677889999999999999999998864
No 136
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=74.25 E-value=18 Score=27.99 Aligned_cols=60 Identities=32% Similarity=0.244 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHH-HHHhcCChHHHHHHHHHH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSI-CQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAi-AydA~GR~~EAiaLYkkL 344 (436)
...+..|...+..|.|..++..++++....... ......+.. +|...|+.++|+..|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566778888888888888888887755444 333344444 888999999999999986
No 137
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=73.40 E-value=22 Score=31.38 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCcCCcc-----hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc-----ccCccchhHHHHHHHHHHH
Q 013807 260 LLAAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM-----VFKSELHGLAALQWSICQD 329 (436)
Q Consensus 260 ~LaaYrk~~Gl~Vdp~-----~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v-----~~~S~LGGeaqLwLAiAyd 329 (436)
..++|+...=.+.+|. +.+.+-..++.++.++++|++.++-.++-+|.+.+ ..+-+-||++.=+|.--|+
T Consensus 6 ~~~~Y~~~~v~tasp~~Li~mLydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~ 85 (124)
T TIGR00208 6 PYQAYQQNSVNTASPGELTLMLYNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYD 85 (124)
T ss_pred HHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 4567887754455555 33778889999999999999999999999987766 3344668999999888887
Q ss_pred hcC
Q 013807 330 SLH 332 (436)
Q Consensus 330 A~G 332 (436)
-+-
T Consensus 86 y~~ 88 (124)
T TIGR00208 86 YMY 88 (124)
T ss_pred HHH
Confidence 543
No 138
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=73.20 E-value=11 Score=37.45 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=23.6
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh-HHHHHHHHHHh-cCC
Q 013807 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP-KEARIMYEKLQ-SHP 348 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~-~EAiaLYkkL~-sHP 348 (436)
+-..|..|+|.+|...|+.|++.=+ -...+...+++|..-.|.. +++...-.+|+ .||
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~----~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDP----NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-C----CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 3344445555555555544443221 1234444445554555544 22333444443 344
No 139
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.01 E-value=7.6 Score=22.21 Aligned_cols=26 Identities=27% Similarity=0.080 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 320 AALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
+-..+++||...|+.++|+..|++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45678999999999999999998875
No 140
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.67 E-value=7.7 Score=25.23 Aligned_cols=27 Identities=22% Similarity=0.079 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 319 LAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
++-+.++.+|...|+.++|+..|++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678999999999999999999874
No 141
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.91 E-value=9.1 Score=42.01 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch------------------------------hHHHHHHHHHHHh
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQWSICQDS 330 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------------------------GeaqLwLAiAydA 330 (436)
.+.-+.|..||..|+|..||.+|-.|+.+-+.+--|- +..---+.-|+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 4556779999999999999999999999988865443 2222335678889
Q ss_pred cCChHHHHHHHHH-HhcCCCHHHHHHHH
Q 013807 331 LHRPKEARIMYEK-LQSHPNALVSKRAR 357 (436)
Q Consensus 331 ~GR~~EAiaLYkk-L~sHP~~eVrKQAk 357 (436)
+||.++|+.-|+. |..-|+-.+=+...
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl 110 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGL 110 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhH
Confidence 9999999999976 56777766544433
No 142
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=71.89 E-value=6.5 Score=45.75 Aligned_cols=112 Identities=17% Similarity=0.256 Sum_probs=76.2
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcc--cCccch---h-HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH---HHHH
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELH---G-LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA---LVSK 354 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~--~~S~LG---G-eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~---eVrK 354 (436)
..|-..|..|.+..|..+|..|...+. .++..| + -....||.|+|.++++..|-.||+.+. -||+- -+|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 357888999999999999999988854 444444 1 246789999999999999999999996 69974 3333
Q ss_pred --HHHHHHHHHHhhhhhhhcccCC-CCcchHHHHHHhhccccccc
Q 013807 355 --RARQFMFSFQAMEMMKVRSSSD-KNTDYRNFFEAFVEDKTNYP 396 (436)
Q Consensus 355 --QAkrLlyiLEAp~llKv~~~~~-~~t~Yd~Yf~~f~~~kt~y~ 396 (436)
.|+.=.=..||-.+++..-... .+-.=..|+.-|-=.+.-|.
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 3444444556777776444422 33344455554444444443
No 143
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=69.54 E-value=6.9 Score=28.75 Aligned_cols=57 Identities=14% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL 316 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L 316 (436)
.+..+.+.-|++-. ..+|...+ -.+..|..++..|++.+|...|++++..-+.++.+
T Consensus 5 ~~~~~A~~~~~~~l--~~~p~~~~---~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 5 GDYDEAIELLEKAL--QRNPDNPE---ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp THHHHHHHHHHHHH--HHTTTSHH---HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred cCHHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 34455555555443 34455333 36789999999999999999999988877664443
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.34 E-value=18 Score=37.05 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=56.4
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHh
Q 013807 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFSFQA 365 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLEA 365 (436)
--.||++|+...|..-+..-.+..+..-|+++.- ||-|||.|+.++|+..|..|. -.|.-.+-.+ |=+-++.|
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lk----am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K--RKlAilka 132 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLK----AMLLEATGNYKEAIEYYESLLEDDPTDTVIRK--RKLAILKA 132 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHH----HHHHHHhhchhhHHHHHHHHhccCcchhHHHH--HHHHHHHH
Confidence 4678999999999999999888886666877764 677999999999999999995 4565544333 33334444
Q ss_pred h
Q 013807 366 M 366 (436)
Q Consensus 366 p 366 (436)
+
T Consensus 133 ~ 133 (289)
T KOG3060|consen 133 Q 133 (289)
T ss_pred c
Confidence 4
No 145
>PRK15331 chaperone protein SicA; Provisional
Probab=69.21 E-value=18 Score=34.24 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=54.0
Q ss_pred HHHHHhCCchhhhhhHHHHHHhh--cccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 013807 287 GDSLMDSGKLKEALPFYEKVMNK--MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPNALVSKRARQFMFSF 363 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~--v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~~eVrKQAkrLlyiL 363 (436)
|--.--.|+|+.|++.|--|..+ -++.. .+..+.||=++|+...|+.-++.... .-+..|+.+|..+|=.|
T Consensus 78 aa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p------~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 78 AAVCQLKKQFQKACDLYAVAFTLLKNDYRP------VFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCc------cchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 44445568888888888876443 33333 56679999999999999998888864 44788999999998765
Q ss_pred H
Q 013807 364 Q 364 (436)
Q Consensus 364 E 364 (436)
.
T Consensus 152 ~ 152 (165)
T PRK15331 152 K 152 (165)
T ss_pred H
Confidence 4
No 146
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.82 E-value=7 Score=43.15 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--c--chhHHHHH--HH
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--E--LHGLAALQ--WS 325 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~--LGGeaqLw--LA 325 (436)
|--.|..+.+.+|++-. .+.|.- ++.+|-.|-..|+-|.|++|++||-.|+......+ + .++-=.|| |-
T Consensus 475 AN~~~s~EAIsAY~rAL--qLqP~y---VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR 549 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRAL--QLQPGY---VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR 549 (579)
T ss_pred cCCcccHHHHHHHHHHH--hcCCCe---eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence 33455667777777554 344442 23467889999999999999999999987665422 1 11211344 66
Q ss_pred HHHHhcCChHHHHHHH
Q 013807 326 ICQDSLHRPKEARIMY 341 (436)
Q Consensus 326 iAydA~GR~~EAiaLY 341 (436)
+++-+.+|.|-++..|
T Consensus 550 ~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 550 LALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHcCCchHHHHhc
Confidence 8888999988666544
No 147
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.85 E-value=15 Score=33.17 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 357 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 357 (436)
+||-..+. -..+|+||+|.+|+.+.+.. .--.+.-|+|.|-=.+|-...+-.-.-+|.+.-.++...=|.
T Consensus 38 ~E~v~lIR-lsSLmNrG~Yq~Al~l~~~~---------~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg~p~lq~Faa 107 (115)
T TIGR02508 38 EEAVQLIR-LSSLMNRGDYQSALQLGNKL---------CYPDLEPWLALCEWRLGLGSALESRLNRLAASGDPRLQTFVA 107 (115)
T ss_pred HHHHHHHH-HHHHHccchHHHHHHhcCCC---------CCchHHHHHHHHHHhhccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45544444 56899999999999988764 234567899999999998887777777777777777665555
Q ss_pred HHH
Q 013807 358 QFM 360 (436)
Q Consensus 358 rLl 360 (436)
-|+
T Consensus 108 g~r 110 (115)
T TIGR02508 108 GMR 110 (115)
T ss_pred HHH
Confidence 443
No 148
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.77 E-value=25 Score=38.97 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHh
Q 013807 96 VARAAVEKAKEY 107 (436)
Q Consensus 96 s~k~a~eka~~y 107 (436)
-.|.|++|||+-
T Consensus 164 ~~k~aldkakda 175 (840)
T KOG2003|consen 164 DFKEALDKAKDA 175 (840)
T ss_pred hHHHHHHHHHhc
Confidence 568899998863
No 149
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=66.18 E-value=12 Score=27.83 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (436)
+..+.+..+..-+ .++|. .....+..|..++..|+|.+|+..|+.+++..+
T Consensus 10 ~~~~A~~~~~~~l--~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 10 DYEEALEVLERAL--ELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHHHHHHHH--HhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3444444444333 44555 445577899999999999999999999998887
No 150
>PRK04841 transcriptional regulator MalT; Provisional
Probab=66.15 E-value=47 Score=36.33 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=46.6
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccCccc-hhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL-HGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L-GGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
-.|..++..|+|.+|..+++.|++..+..... -+.+...++.++-..|+.++|+.+|++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al 518 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE 518 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35777888999999999999998865544322 23455668888889999999998888764
No 151
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.05 E-value=28 Score=37.56 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=89.5
Q ss_pred CccCcHHHHHHHHHHHHHHHHHHHhhcCCcCCcc------hHH----------------HHHHHHHHHHHHHhCCchhhh
Q 013807 242 DVLETAEARAAKEERTRQLLAAYKKSVGLNVDPK------LKS----------------ECEKALKDGDSLMDSGKLKEA 299 (436)
Q Consensus 242 e~lEteEEkaaR~~rtke~LaaYrk~~Gl~Vdp~------~k~----------------e~eea~~~Gk~AmerGkYr~A 299 (436)
..+..--++....+..+-.+.-|.-=..+....- ++. .+...|=.|.-++..|++++|
T Consensus 344 ~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A 423 (608)
T PF10345_consen 344 ESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAA 423 (608)
T ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHH
Confidence 3344555666677777777777765444444333 111 122356668999999999999
Q ss_pred hhHHH-------HHHhhcccCccchhHHHHHHHHHHHhcCChHH----HHHHHHHHh----cCCCHHHHHHHHHHHHHHH
Q 013807 300 LPFYE-------KVMNKMVFKSELHGLAALQWSICQDSLHRPKE----ARIMYEKLQ----SHPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 300 V~~lE-------kA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E----AiaLYkkL~----sHP~~eVrKQAkrLlyiLE 364 (436)
+.+|. .....-+..+++--.+.|.+++.|+.-++..+ +-.+.++|. .||+..++.-..-++.++.
T Consensus 424 ~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~ 503 (608)
T PF10345_consen 424 LYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYN 503 (608)
T ss_pred HHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHh
Confidence 99999 45555566678888999999999999998776 778888774 6999998877777766665
Q ss_pred hh
Q 013807 365 AM 366 (436)
Q Consensus 365 Ap 366 (436)
.-
T Consensus 504 ~~ 505 (608)
T PF10345_consen 504 TF 505 (608)
T ss_pred hC
Confidence 44
No 152
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.58 E-value=16 Score=34.08 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=36.8
Q ss_pred CcchHHHHH----HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh
Q 013807 273 DPKLKSECE----KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG 318 (436)
Q Consensus 273 dp~~k~e~e----ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG 318 (436)
|+...++|| +..+.|..++.+|.+.+++.+|-.|+..++....|-+
T Consensus 70 d~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~ 119 (143)
T KOG4056|consen 70 DPSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQ 119 (143)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHH
Confidence 344445555 6778899999999999999999999998877776654
No 153
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=65.40 E-value=30 Score=32.10 Aligned_cols=64 Identities=9% Similarity=-0.084 Sum_probs=49.7
Q ss_pred CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHH
Q 013807 293 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFM 360 (436)
Q Consensus 293 rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLl 360 (436)
.+++.+++..|++++..-|.+. +.-+.|+.+|-+.|+.++|+..|++.. ..| +.++.-.-...+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~----~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS----EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6778899999999999887764 456678889999999999999999996 355 555554444433
No 154
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.19 E-value=12 Score=42.58 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=53.1
Q ss_pred HHHHHHHH-HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHH-HhcCC
Q 013807 278 SECEKALK-DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK-LQSHP 348 (436)
Q Consensus 278 ~e~eea~~-~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk-L~sHP 348 (436)
-++.++|. .|..+-+||++.+|+.+|+.++++-+-. -++-+.||+||.+-|+.++|-..|.. |+-.|
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~f----ida~inla~al~~~~~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKF----IDAYINLAAALVTQGDLELAVQCFFEALQLNP 181 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchh----hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence 45667777 7888999999999999999998876543 35778899999999999998888765 34455
No 155
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.00 E-value=34 Score=33.20 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=57.6
Q ss_pred cCCcc-hHHHHHHHHHHHHHHHhCC-chhhhhhHHHHHHhhccc---Ccc-------chhHHHHHHHHHHHhcCChH---
Q 013807 271 NVDPK-LKSECEKALKDGDSLMDSG-KLKEALPFYEKVMNKMVF---KSE-------LHGLAALQWSICQDSLHRPK--- 335 (436)
Q Consensus 271 ~Vdp~-~k~e~eea~~~Gk~AmerG-kYr~AV~~lEkA~~~v~~---~S~-------LGGeaqLwLAiAydA~GR~~--- 335 (436)
..+|. .+..|+.-|..|+.+++++ +|..|+.+|+.|.+.+.. ... +-..+-.-||.||=..+..+
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 44565 6688999999999999999 999999999999998744 112 22345556888887777643
Q ss_pred HHHHHHHHHh-cCCC
Q 013807 336 EARIMYEKLQ-SHPN 349 (436)
Q Consensus 336 EAiaLYkkL~-sHP~ 349 (436)
.|..+-+.++ -||+
T Consensus 105 ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 105 KALNALRLLESEYGN 119 (278)
T ss_pred HHHHHHHHHHHhCCC
Confidence 4555555564 3666
No 156
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=64.12 E-value=14 Score=38.94 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 350 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~ 350 (436)
.+-.|+.+.-+|+..+|++.|+.++..-..--.++-.....++.||=..++.++|...+.+|..|-+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 67789999999999999999999885444445778888888999999999999999999999866544
No 157
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.96 E-value=25 Score=34.54 Aligned_cols=80 Identities=23% Similarity=0.227 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh--cccCccchhHHHHHHHHHHHhcCCh
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK--MVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~--v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
+.+.++.-+-.++.+.|..++..+. ++.++..+..|+|.+|+..|+.+.+. .+..-++-|.+. =+.|+.
T Consensus 105 ~d~A~aqL~~~l~~t~De~lk~l~~--lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDil-------l~kg~k 175 (207)
T COG2976 105 LDKAEAQLKQALAQTKDENLKALAA--LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDIL-------LAKGDK 175 (207)
T ss_pred HHHHHHHHHHHHccchhHHHHHHHH--HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHH-------HHcCch
Confidence 3344444444555556665655543 34456666666777776666665444 333334444443 356777
Q ss_pred HHHHHHHHHHh
Q 013807 335 KEARIMYEKLQ 345 (436)
Q Consensus 335 ~EAiaLYkkL~ 345 (436)
++|++=|++=.
T Consensus 176 ~~Ar~ay~kAl 186 (207)
T COG2976 176 QEARAAYEKAL 186 (207)
T ss_pred HHHHHHHHHHH
Confidence 77777777653
No 158
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=62.88 E-value=14 Score=39.51 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc----------------cch--------------hHHHHHHH
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----------------ELH--------------GLAALQWS 325 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----------------~LG--------------GeaqLwLA 325 (436)
..++++.-|+.|+.++-+|+|.+|+-+|-+|++.=|-+- +.+ --+.+|-.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 346777788888888888888888888888876543221 000 12334444
Q ss_pred HHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 013807 326 ICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ 358 (436)
Q Consensus 326 iAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr 358 (436)
..+=..|..++|++=++++. +.|+.+..+.|..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqs 147 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQS 147 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 45555566677777776664 4565555555543
No 159
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=62.10 E-value=15 Score=24.02 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 320 AALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
+-..++.||...|+.++|+.-|++-.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 44678999999999999999999874
No 160
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.87 E-value=9.9 Score=40.86 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=44.3
Q ss_pred HHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCCHHH
Q 013807 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SHPNALV 352 (436)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sHP~~eV 352 (436)
...+-+|--|+.+||-.... .-+--..+++|+|-||=-+|..++|...|+-|. ..|+.++
T Consensus 32 fls~rDytGAislLefk~~~---~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el 93 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL---DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL 93 (557)
T ss_pred HHhcccchhHHHHHHHhhcc---chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence 45566777888887766521 122225789999999999999999999999996 4555543
No 161
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=60.80 E-value=9.8 Score=26.28 Aligned_cols=33 Identities=15% Similarity=-0.074 Sum_probs=25.6
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHH
Q 013807 303 YEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARI 339 (436)
Q Consensus 303 lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAia 339 (436)
|++|+++=|.+. ++-.+|+.+|...|+.++|++
T Consensus 2 y~kAie~~P~n~----~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNA----EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCH----HHHHHHHHHHHHCcCHHhhcC
Confidence 566666665544 577889999999999999973
No 162
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.97 E-value=35 Score=39.13 Aligned_cols=10 Identities=50% Similarity=0.518 Sum_probs=5.1
Q ss_pred CCCCChHHHH
Q 013807 60 EASLDPVKLA 69 (436)
Q Consensus 60 ~~~~dpvkla 69 (436)
..+.|-..||
T Consensus 46 ~~~~~~l~la 55 (966)
T KOG4626|consen 46 EGSDDRLELA 55 (966)
T ss_pred ccchhHHHHH
Confidence 3455555555
No 163
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=59.92 E-value=12 Score=30.52 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh
Q 013807 341 YEKLQSHPNALVSKRARQFMFSFQAM 366 (436)
Q Consensus 341 YkkL~sHP~~eVrKQAkrLlyiLEAp 366 (436)
-.+|++|++++|++.|+.|+-.+...
T Consensus 47 v~~Lrkh~~~~I~~~A~~Li~~WK~~ 72 (75)
T smart00509 47 VNGLRKHKNEEIRKLAKKLIKSWKKL 72 (75)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999877643
No 164
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=59.90 E-value=13 Score=33.40 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG 318 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG 318 (436)
.-+-+..+.|..++.+|++.+|+.+|=+|+..++..+.|=+
T Consensus 61 ~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~ 101 (121)
T PF02064_consen 61 RFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQ 101 (121)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 33567888999999999999999999999998888776544
No 165
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=59.58 E-value=22 Score=36.33 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc-cchhHHHHHHHHHHHhcCC-hHHHHHHHHHHhc
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-ELHGLAALQWSICQDSLHR-PKEARIMYEKLQS 346 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-~LGGeaqLwLAiAydA~GR-~~EAiaLYkkL~s 346 (436)
.=+-.|..+|..|++..|+..|..|..+.+.|. .++|.+. +..|++-++ ..+|+.|.++...
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~ae---aL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAE---ALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHhcCCcccHHHHHHHHHHHh
Confidence 356679999999999999999999999999988 5566555 444555332 3566667766654
No 166
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.42 E-value=23 Score=38.31 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc
Q 013807 251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS 314 (436)
Q Consensus 251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S 314 (436)
....+..-+.+-+|+.++ ...-..+.++|..+..+|..++|.+|++.-..|++.+.+++
T Consensus 495 L~~~a~~lE~~Iqy~nRf-----r~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG~ 553 (569)
T PRK04778 495 LVENATLTEQLIQYANRY-----RSDNEEVAEALNEAERLFREYDYKAALEIIATALEKVEPGV 553 (569)
T ss_pred HHHHHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCcH
Confidence 334455556677787666 44568889999999999999999999999999999998765
No 167
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=59.20 E-value=12 Score=30.21 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh
Q 013807 341 YEKLQSHPNALVSKRARQFMFSFQAM 366 (436)
Q Consensus 341 YkkL~sHP~~eVrKQAkrLlyiLEAp 366 (436)
-.+|++|++++|++.|+.|+-.+...
T Consensus 49 V~~Lrkh~~~~i~~~A~~Lv~~Wk~~ 74 (76)
T cd00183 49 VNSLRKHSNEKIRKLAKALIKSWKKL 74 (76)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999877653
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=58.70 E-value=27 Score=35.69 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=22.1
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHH
Q 013807 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW 324 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL 324 (436)
|..+|+.|+|.+|+..+|+-++.++.+..--..++--.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~i 271 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSI 271 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 56666666666666666666666666555444444333
No 169
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.46 E-value=36 Score=28.40 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
+..|+.+..++..|+|.+|++.|..++..-. .--.|.+.--+..+.+.+|..
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr--~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDR--DYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T--TCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--cccccHHHHHHHHHHHHcCCC
Confidence 4566666666666666666666665554421 112234444444444444443
No 170
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=57.89 E-value=53 Score=36.78 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCcCCcc-----hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHH
Q 013807 246 TAEARAAKEERTRQLLAAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA 320 (436)
Q Consensus 246 teEEkaaR~~rtke~LaaYrk~~Gl~Vdp~-----~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea 320 (436)
+-|.....+...+-.+.+++++.-+.+.+. +.+-..-.....+.+|.+++|++-++.+++++++-||.+.+=+
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~-- 282 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP-- 282 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH--
Confidence 334444444455555667777777777763 2233345566799999999999999999999999999998744
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 013807 321 ALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMF 361 (436)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLly 361 (436)
+.++ ||--+|...+=.-|=-+|. .||+..|+=-|=-+-|
T Consensus 283 -~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 283 -LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred -HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 5667 8888999998888888996 7999988765555544
No 171
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=57.61 E-value=55 Score=30.56 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=42.4
Q ss_pred hhcCCcCCcchHH-HHHHHHHHHHHHHhCC-chhhhhhHHHHHHhhcccCccchh
Q 013807 266 KSVGLNVDPKLKS-ECEKALKDGDSLMDSG-KLKEALPFYEKVMNKMVFKSELHG 318 (436)
Q Consensus 266 k~~Gl~Vdp~~k~-e~eea~~~Gk~AmerG-kYr~AV~~lEkA~~~v~~~S~LGG 318 (436)
...+.-.|++.++ -+-+..+.|..+..+| ++.+|+.+|=+|+.-++....|=+
T Consensus 75 ~~~p~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~ 129 (148)
T TIGR00985 75 AKAPDPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLS 129 (148)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHH
Confidence 3456666776554 4778899999999999 999999999999988887776644
No 172
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.41 E-value=87 Score=32.38 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=53.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC--ChHHHHHHHHHHhcCCCH
Q 013807 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH--RPKEARIMYEKLQSHPNA 350 (436)
Q Consensus 274 p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G--R~~EAiaLYkkL~sHP~~ 350 (436)
.....-.+..+.....+|++++|.+|...|+...+.++..-+ =+.--.++.||++=. ++++|...-+++..+...
T Consensus 125 ~p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~ 201 (379)
T PF09670_consen 125 NPYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKA 201 (379)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhh
Confidence 334445567788899999999999999999998876443322 122345778888865 478888888887766433
No 173
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=57.34 E-value=73 Score=29.47 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC---------------hHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR---------------PKEARIMYE 342 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR---------------~~EAiaLYk 342 (436)
-..+..|+.|...|.+|+|.+|+..++.=+.+=|..-.+.. |..--++|+-...+ ..+|..-.+
T Consensus 45 ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY-a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~ 123 (142)
T PF13512_consen 45 YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY-AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFE 123 (142)
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH-HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHH
Confidence 33467899999999999999999999999988887777662 22233333333332 678999999
Q ss_pred HHh-cCCCHHHHHHHHH
Q 013807 343 KLQ-SHPNALVSKRARQ 358 (436)
Q Consensus 343 kL~-sHP~~eVrKQAkr 358 (436)
+|. .+|+-+-...|++
T Consensus 124 ~lv~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 124 QLVRRYPNSEYAADARK 140 (142)
T ss_pred HHHHHCcCChhHHHHHh
Confidence 996 7999887777764
No 174
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.31 E-value=86 Score=34.92 Aligned_cols=59 Identities=8% Similarity=0.044 Sum_probs=44.6
Q ss_pred HHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhhc
Q 013807 304 EKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVR 372 (436)
Q Consensus 304 EkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLEAp~llKv~ 372 (436)
...+.+++....--+..+.|++-++++.|+.++|...|+++....+ .|||=|.+.+...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~----------fYG~LAa~~Lg~~ 390 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRG----------FYPMVAAQRLGEE 390 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----------cHHHHHHHHcCCC
Confidence 3444556665555678999999999999999999999999954321 7788777766543
No 175
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.56 E-value=49 Score=27.66 Aligned_cols=64 Identities=9% Similarity=-0.067 Sum_probs=43.2
Q ss_pred hhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Q 013807 299 ALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFSFQAM 366 (436)
Q Consensus 299 AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLEAp 366 (436)
.+..|+++++.-|-.. ++.+.||.+|=+.|+.++|++.+=.+. +|+..+=-.-=+.|+=+|++.
T Consensus 7 ~~~al~~~~a~~P~D~----~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 7 DIAALEAALAANPDDL----DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHSTT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 3566777777655543 899999999999999999999998886 566552222224566666653
No 176
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=56.17 E-value=31 Score=40.55 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=41.2
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHH------------HHhcCChHHHHHHHHHHhc
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSIC------------QDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiA------------ydA~GR~~EAiaLYkkL~s 346 (436)
.|+.++++|+|++|++++.+|+.+.+.++-|= |.|.-++++. .++++..++|+.+++.|..
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37777777777777777777777777777654 5555555543 3455667777777777763
No 177
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=56.17 E-value=23 Score=38.41 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhC-CchhhhhhHHHHHHhhcccCc
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS-GKLKEALPFYEKVMNKMVFKS 314 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~Amer-GkYr~AV~~lEkA~~~v~~~S 314 (436)
-..+..-+.|-+|-.++ .....++.+++..+..+|.+ |+|.+|++.-..|++.+.+.+
T Consensus 492 i~~A~L~E~~iQYaNRY-----R~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~vePG~ 550 (560)
T PF06160_consen 492 IDNATLAEQLIQYANRY-----RSDNPEVDEALTEAEDLFRNEYDYEKALETIATALEKVEPGA 550 (560)
T ss_pred HHHHHHHHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCH
Confidence 34455666677777666 33457888999999999999 999999999999999998765
No 178
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=56.05 E-value=12 Score=31.24 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 321 ALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.|..|+++|-.|..++|+++|++=.
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 3455777888888888888887643
No 179
>PRK05685 fliS flagellar protein FliS; Validated
Probab=55.33 E-value=76 Score=28.22 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=53.1
Q ss_pred HHHHHh----hcCCcCCcc-----hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc-----ccCccchhHHHHHHHH
Q 013807 261 LAAYKK----SVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM-----VFKSELHGLAALQWSI 326 (436)
Q Consensus 261 LaaYrk----~~Gl~Vdp~-----~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v-----~~~S~LGGeaqLwLAi 326 (436)
.++|+. ..=.+.+|. +.+.+-..++.++.+++.|++.++-.++-+|.+.+ ..+.+-||++.=+|.-
T Consensus 7 ~~~Y~~~~~~~~v~tasp~~Li~mLydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~ 86 (132)
T PRK05685 7 YQAYQQVSVESQVSSASPHKLIQMLYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSA 86 (132)
T ss_pred HHHHHhccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHH
Confidence 356775 332334444 33777788889999999999999999999997766 3455678999988888
Q ss_pred HHHhcC
Q 013807 327 CQDSLH 332 (436)
Q Consensus 327 AydA~G 332 (436)
-|+-+-
T Consensus 87 LY~y~~ 92 (132)
T PRK05685 87 LYDYMI 92 (132)
T ss_pred HHHHHH
Confidence 887543
No 180
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=55.11 E-value=71 Score=32.27 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
..++..+..|+-+++||.|=.|+--++.+++. -.+|.--.++-.+|.-+|.++|-.++|...=+-|. .-|+-
T Consensus 165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 55667889999999999999999999999999 67778888999999999999999999998877775 34443
No 181
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=53.98 E-value=62 Score=34.56 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc---------chhHHHHH-HHHHH
Q 013807 259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---------LHGLAALQ-WSICQ 328 (436)
Q Consensus 259 e~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---------LGGeaqLw-LAiAy 328 (436)
..|..-.+..|+.+ +..+..|+-++-.|+.|.|..|-.+|=--..+++..-+ |..|+-++ |-.|+
T Consensus 113 ~~l~~L~e~ynf~~-----e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~ 187 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTP-----ERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGAL 187 (432)
T ss_pred HHHHHHHHhcCCCH-----HHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHH
Confidence 44444445554443 46778999999999999999999988877777766554 33455554 89999
Q ss_pred HhcCChHHHHH
Q 013807 329 DSLHRPKEARI 339 (436)
Q Consensus 329 dA~GR~~EAia 339 (436)
|-++|..|-|+
T Consensus 188 edL~rLre~ID 198 (432)
T KOG2758|consen 188 EDLTRLREYID 198 (432)
T ss_pred HHHHHHHHHHc
Confidence 99999777553
No 182
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.88 E-value=39 Score=33.27 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCH
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 350 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~ 350 (436)
+.--.-..|..++..+|.|+|..|+..|..+++. +..+.|.-.+.+-||-.+=..|..|+|+.+-...+-|--.
T Consensus 85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~ 158 (207)
T COG2976 85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA 158 (207)
T ss_pred cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH
Confidence 3344456778899999999999999999988765 3456788899999999999999999999998888877443
No 183
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.64 E-value=20 Score=29.85 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 013807 319 LAALQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkk 343 (436)
..-+..|+-+|..||.+|||..|+.
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~ 31 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKK 31 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3445678999999999999999986
No 184
>PLN03077 Protein ECB2; Provisional
Probab=51.52 E-value=1.4e+02 Score=33.14 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013807 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 348 (436)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 348 (436)
.-..|.+.+|..+|+...+.-+..-. -+.--.++.+|-..|+.+||..+++++...|
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRAGKLTEAYNFINKMPITP 655 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 45678999999999987644322222 2455667888999999999999999864333
No 185
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=50.73 E-value=40 Score=31.07 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=67.7
Q ss_pred HHHHHHhhcCCcCCcc-----hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc-----cCccchhHHHHHHHHHHH
Q 013807 260 LLAAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV-----FKSELHGLAALQWSICQD 329 (436)
Q Consensus 260 ~LaaYrk~~Gl~Vdp~-----~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~-----~~S~LGGeaqLwLAiAyd 329 (436)
.+.+|+..+=.+-.|. +.+-|-+.+..++.+|++|++.++.+++-+|.+.+. .+-+=||++.-.|---|+
T Consensus 6 ~~~aY~qn~V~taSP~~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~ 85 (132)
T COG1516 6 AYQAYQQNQVNTASPHKLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYD 85 (132)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHH
Confidence 4556766632222332 337888999999999999999999999999988763 445667888888877777
Q ss_pred hcCChHHHHHHHHHHh-----c--CCCHHHHHHHHHHHHHHH
Q 013807 330 SLHRPKEARIMYEKLQ-----S--HPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 330 A~GR~~EAiaLYkkL~-----s--HP~~eVrKQAkrLlyiLE 364 (436)
=+ .++|. . +--.+|...-++|+.+++
T Consensus 86 y~---------~~rL~~ANl~nd~~~i~eV~~ll~~l~eaW~ 118 (132)
T COG1516 86 YM---------VRRLVQANLKNDASKIDEVIGLLRELREAWK 118 (132)
T ss_pred HH---------HHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 43 33332 2 233577888888888876
No 186
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=50.64 E-value=69 Score=30.42 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
..+.+..-++-++.+...|.+..|..++..+...-...+.+.-.+.+..|-.+-+-|++.+|+.+-+.+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44666778888999999999999999999998877777777888899889999999999999998877765
No 187
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=50.48 E-value=19 Score=32.90 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (436)
+..++.++.+++.|+|+-|.+++..++..=+.+. ++.--+|-||+++|...+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~----~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNE----EARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H----HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHhcc
Confidence 4578889999999999999999999877554433 466667777777776543
No 188
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=49.60 E-value=47 Score=36.76 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
....+.-+-..|+.++||.+|...|...+..+.++ |.-+|..||=.+++..|++++-.+-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~--IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN--IRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh--HHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 44567777789999999999999999988878877 8888999999999999999886664
No 189
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=49.24 E-value=73 Score=26.61 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh
Q 013807 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 309 (436)
Q Consensus 274 p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (436)
|..-..+++.|+.++.+|+.|+|.+|..+.+.|...
T Consensus 39 p~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 39 PVELKEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445588999999999999999999999999987655
No 190
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=48.61 E-value=1.3e+02 Score=27.32 Aligned_cols=63 Identities=8% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHhcCChHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCcchHHHHHHhhccccc
Q 013807 324 WSICQDSLHRPKEAR-IMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTN 394 (436)
Q Consensus 324 LAiAydA~GR~~EAi-aLYkkL~sHP~~eVrKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~~f~~~kt~ 394 (436)
+-.|++.-.=+||.. .||+|+..||+.+-..++=+||..+=+- ++.+....+|...|-.....
T Consensus 52 ~~~~~~~~~LrDEiy~QLiKQtt~Np~~~s~~rgW~Ll~l~~~~--------FpPS~~l~~yL~~~l~~~~~ 115 (144)
T smart00139 52 LQKGLAHPELRDEIYCQLIKQLTDNPSRQSEERGWELLYLCTSL--------FPPSERLLPYLLQFLSRRAD 115 (144)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHhH--------cCChHHHHHHHHHHHHhcCC
Confidence 345555555566654 4899999999998777776666655322 55555777777777766443
No 191
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=47.85 E-value=28 Score=28.38 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
+...++.|...-..|+|.+|+.+|..+++.+
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666665544
No 192
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=47.85 E-value=44 Score=36.70 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=55.1
Q ss_pred CCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch--------------hHHHHHHHHHHHhcCCh
Q 013807 269 GLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--------------GLAALQWSICQDSLHRP 334 (436)
Q Consensus 269 Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--------------GeaqLwLAiAydA~GR~ 334 (436)
.+...|...+-++.+|+++..-|.+|+|..|.--|-.|+++|+-.-.++ .-+.-.|++||=-+++.
T Consensus 165 ~~s~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp 244 (569)
T PF15015_consen 165 NFSFLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKP 244 (569)
T ss_pred CcccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC
Confidence 3455677888888999999999999999888888888888886543333 24556799999999998
Q ss_pred HHHHH
Q 013807 335 KEARI 339 (436)
Q Consensus 335 ~EAia 339 (436)
+-|+-
T Consensus 245 dlALn 249 (569)
T PF15015_consen 245 DLALN 249 (569)
T ss_pred chHHH
Confidence 87764
No 193
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.55 E-value=32 Score=27.59 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
.+...++.|...=..|.|.+|+.+|..|++.+
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34455566666667777777777777776655
No 194
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=47.53 E-value=62 Score=26.60 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=11.9
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 013807 323 QWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkk 343 (436)
..|+-+|..|+.+||+.+|.+
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~ 31 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQE 31 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 345556666666666666543
No 195
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=47.50 E-value=62 Score=29.41 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=61.4
Q ss_pred HhcCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhhccc---CCCCcchHHHHHHhhcccccccCccCc--ch
Q 013807 329 DSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSS---SDKNTDYRNFFEAFVEDKTNYPLQEAG--SE 403 (436)
Q Consensus 329 dA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLEAp~llKv~~~---~~~~t~Yd~Yf~~f~~~kt~y~~~e~~--~~ 403 (436)
.++-+.++=.++|..|-.|++.+|.|.|=+-++.+.-+-+.+-... .-+.+ +|-|.=+.+...++. .+
T Consensus 10 k~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lldd~-------~frdeL~~f~~~~~~~~I~ 82 (141)
T PF07539_consen 10 KSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLDDK-------TFRDELTTFNLSDESSVIE 82 (141)
T ss_pred HHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcCcc-------hHHHHHHhhcccCCcCCCC
Confidence 3567888999999999999999999999999999988766654444 11222 344444455555433 55
Q ss_pred hhhhhhhHHHHHHHHhhHH
Q 013807 404 EGALTQALPYMIFLASPIF 422 (436)
Q Consensus 404 e~~l~q~l~y~~~l~sPi~ 422 (436)
++.-.+++|+++=|+.+-+
T Consensus 83 ~ehR~~l~pvvlRILygk~ 101 (141)
T PF07539_consen 83 EEHRPELMPVVLRILYGKM 101 (141)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 6666778888877776543
No 196
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.07 E-value=71 Score=34.77 Aligned_cols=69 Identities=25% Similarity=0.428 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHH-HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHH
Q 013807 249 ARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKD-GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC 327 (436)
Q Consensus 249 EkaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~-Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiA 327 (436)
.+..+...+..-|..||.+. .|+-++.++.+ |+-+++.|++..|+..|-.|.+.| |..+--+.||+..-
T Consensus 125 ~a~~~le~L~~eLk~yK~n~-------iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC---Ts~khvInm~ln~i 194 (466)
T KOG0686|consen 125 KAVLKLEKLDNELKSYKDNL-------IKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYC---TSAKHVINMCLNLI 194 (466)
T ss_pred HHHHHHHHHHHHHHHhhcch-------hhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhh---cchHHHHHHHHHHH
Confidence 33555666777788888544 67767766654 999999999999999999999999 66666667765443
No 197
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.96 E-value=75 Score=24.62 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHH
Q 013807 321 ALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLlyiLE 364 (436)
-.++|+++=.+|+.++|+..|+.| +.+|+- .||+.|.-.++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N---~Qa~~L~~~i~ 45 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN---RQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---HHHHHHHHHHH
Confidence 457999999999999999999998 478874 57888877666
No 198
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=46.01 E-value=39 Score=26.22 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
...+.|..+=+.|+|.+|+.+|..+++.+
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34445555556777777777777766554
No 199
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=45.86 E-value=39 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
+.+.++.|..+=..|+|.+|+.+|..|++.+
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444555666666788888888888876655
No 200
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.78 E-value=2.7e+02 Score=27.79 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (436)
+..|.+.++++-+-..-+--| .--+--..++.+-.+|+.|.|++-..-.|. +...++.+--.+.=-|..+-=..|+
T Consensus 107 kgdta~AV~aFdeia~dt~~P-~~~rd~ARlraa~lLvD~gsy~dV~srvep---La~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 107 KGDTAAAVAAFDEIAADTSIP-QIGRDLARLRAAYLLVDNGSYDDVSSRVEP---LAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred cccHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHHHhccccHHHHHHHhhh---ccCCCChhHHHHHHHHhHHHHhccc
Confidence 344555566555322222222 222334567788889999999887776665 2223333333333334555556799
Q ss_pred hHHHHHHHHHHh--cCCCHHHHHHHHHHH
Q 013807 334 PKEARIMYEKLQ--SHPNALVSKRARQFM 360 (436)
Q Consensus 334 ~~EAiaLYkkL~--sHP~~eVrKQAkrLl 360 (436)
+..|..++.+|. ..-...||..|+-||
T Consensus 183 ~a~A~~~F~qia~Da~aprnirqRAq~ml 211 (221)
T COG4649 183 FAKAKSWFVQIANDAQAPRNIRQRAQIML 211 (221)
T ss_pred hHHHHHHHHHHHccccCcHHHHHHHHHHH
Confidence 999999999997 456678999888765
No 201
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.13 E-value=43 Score=35.91 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=37.9
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
+.|+-++.-|+|++|-+.|..+++.-+ +=+..+-|+-+|+.+.+...|+-+|.+-
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~-----~~dTfllLskvY~ridQP~~AL~~~~~g 282 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-----HPDTFLLLSKVYQRIDQPERALLVIGEG 282 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC-----chhHHHHHHHHHHHhccHHHHHHHHhhh
Confidence 568999999999999999988776443 3455555555665555555555555543
No 202
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=43.98 E-value=8.9 Score=41.49 Aligned_cols=27 Identities=48% Similarity=0.804 Sum_probs=22.9
Q ss_pred ccccccC-ccccccccCCCCCCccccCC
Q 013807 208 NLEFYKP-KVSTWGVFPRPGNISKTFGG 234 (436)
Q Consensus 208 ~~d~YKP-kVsTWGvFPRP~NISkayGG 234 (436)
+.+.|+= =++||||-|||.+|--.|||
T Consensus 382 n~~~y~e~C~~~~~v~prP~wi~t~fgg 409 (492)
T KOG2183|consen 382 NSESYQEGCMQTFGVTPRPKWITTEFGG 409 (492)
T ss_pred CHHHHHHHHHHhcCCCCCCcceehhhcc
Confidence 4556666 58999999999999999988
No 203
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=43.97 E-value=52 Score=30.04 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcC------Ch----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 013807 319 LAALQWSICQDSLH------RP----KEARIMYEKLQSHPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 319 eaqLwLAiAydA~G------R~----~EAiaLYkkL~sHP~~eVrKQAkrLlyiLE 364 (436)
.+..|+..+.+..+ .. +....+-.++...++++||+.|++++..|.
T Consensus 150 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 150 ECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56678888888888 11 456666677779999999999999999985
No 204
>PF15469 Sec5: Exocyst complex component Sec5
Probab=43.76 E-value=2.3e+02 Score=25.80 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHH
Q 013807 249 ARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ 328 (436)
Q Consensus 249 EkaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAy 328 (436)
+++.+-+.+...|.+|+.=..|. ..=..++.+|.|..+|..|.+|..+....-.--.-.+--|.-|-
T Consensus 68 ~k~~~l~~~l~~l~r~~flF~LP-------------~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve 134 (182)
T PF15469_consen 68 EKADKLRNALEFLQRNRFLFNLP-------------SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVE 134 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45555566666666655333221 11234578999999999999998877543211122222234444
Q ss_pred HhcCChHHHHHHHHHHhcCC
Q 013807 329 DSLHRPKEARIMYEKLQSHP 348 (436)
Q Consensus 329 dA~GR~~EAiaLYkkL~sHP 348 (436)
.-+++.. ..|+++|...|
T Consensus 135 ~ii~~~r--~~l~~~L~~~~ 152 (182)
T PF15469_consen 135 KIIEEFR--EKLWEKLLSPP 152 (182)
T ss_pred HHHHHHH--HHHHHHHhCCC
Confidence 4443333 37888887665
No 205
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.44 E-value=67 Score=36.27 Aligned_cols=58 Identities=24% Similarity=0.147 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.-.|+.+...|+.++|+++||+|..+=+.+. .....-+-.|=+++|.+||+...+.|+
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~----l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNP----LCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445555555555555555555544433322 123333444555555555555555553
No 206
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.26 E-value=37 Score=37.70 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCCHHHHHHHHHHHHHH
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SHPNALVSKRARQFMFSF 363 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sHP~~eVrKQAkrLlyiL 363 (436)
.|..+|-.|.|..|.++|..|+..=. ---++-+.....++++|+.+||+..+=+|- -.-+.+|--|-..+--.|
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~nda----sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDA----SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL 571 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCch----HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 47778888999999999988875432 223556666677888888888888877773 344566665555555555
Q ss_pred H
Q 013807 364 Q 364 (436)
Q Consensus 364 E 364 (436)
|
T Consensus 572 e 572 (840)
T KOG2003|consen 572 E 572 (840)
T ss_pred h
Confidence 4
No 207
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=43.25 E-value=40 Score=26.19 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 013807 320 AALQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 320 aqLwLAiAydA~GR~~EAiaLYkk 343 (436)
-.++.|+-+|..|+.++|+.+|++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKE 30 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345678899999999999999986
No 208
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.92 E-value=1.3e+02 Score=32.47 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC
Q 013807 274 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK 313 (436)
Q Consensus 274 p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~ 313 (436)
+-.-....+.++.|-++|..|++.+|+..|..++-.+++-
T Consensus 198 ~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~ 237 (422)
T PF06957_consen 198 PLSLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLL 237 (422)
T ss_dssp ---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhee
Confidence 3344667789999999999999999999999988775543
No 209
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=42.86 E-value=10 Score=29.63 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=8.3
Q ss_pred HHHHHHhhHHHHHH
Q 013807 413 YMIFLASPIFVILL 426 (436)
Q Consensus 413 y~~~l~sPi~~v~~ 426 (436)
|++|++.|||+|+.
T Consensus 1 y~~~~iV~i~iv~~ 14 (50)
T PF12606_consen 1 YIAFLIVSIFIVMG 14 (50)
T ss_pred CeehHHHHHHHHHH
Confidence 45666666666543
No 210
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.57 E-value=44 Score=26.28 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
.+.+..|..+=+.|.|.+|+.+|..|++.+
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334444455555666666666666665554
No 211
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=42.48 E-value=1.1e+02 Score=36.14 Aligned_cols=61 Identities=28% Similarity=0.243 Sum_probs=46.5
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHH-HHHHHHhcCChHHHHHHHHHH-hcCCCHHH
Q 013807 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ-WSICQDSLHRPKEARIMYEKL-QSHPNALV 352 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw-LAiAydA~GR~~EAiaLYkkL-~sHP~~eV 352 (436)
|-.++..|++.+|+..||.. ...... -+-.|+ +..||+-+++.++|..+|++. +..|+.+.
T Consensus 50 aLsl~r~gk~~ea~~~Le~~-~~~~~~----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eel 112 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEAL-YGLKGT----DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEEL 112 (932)
T ss_pred HHHHHHhcCchhHHHHHhhh-ccCCCC----chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHH
Confidence 56778899999999888763 222222 334444 799999999999999999998 48998554
No 212
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.36 E-value=1.7e+02 Score=32.87 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=63.4
Q ss_pred CcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh--cC
Q 013807 270 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SH 347 (436)
Q Consensus 270 l~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sH 347 (436)
-+||.+++-.++..+=.|--.|-.|.+-.|-+.|.+|+.+-+..-.| -|-++.+|--..++++-+.-+.+-. ..
T Consensus 316 n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l----yI~~a~~y~d~~~~~~~~~~F~~A~~ldp 391 (606)
T KOG0547|consen 316 NEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL----YIKRAAAYADENQSEKMWKDFNKAEDLDP 391 (606)
T ss_pred cccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH----HHHHHHHHhhhhccHHHHHHHHHHHhcCC
Confidence 38999999999999999999999999999999999999887766655 3444555544455444444444332 23
Q ss_pred CCHHHHHHHHHHHHHHH
Q 013807 348 PNALVSKRARQFMFSFQ 364 (436)
Q Consensus 348 P~~eVrKQAkrLlyiLE 364 (436)
-|+.|=-+=-||+|+||
T Consensus 392 ~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 392 ENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred CCCchhHhHHHHHHHHH
Confidence 34555555555555554
No 213
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=41.96 E-value=4e+02 Score=27.25 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=55.1
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc--------CCCHHHHHHH
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--------HPNALVSKRA 356 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--------HP~~eVrKQA 356 (436)
+....+...|+++.++++++.-...=+.... +..++--+|...|+...||..|++|.+ -|.+++++.=
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~----~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEP----AYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3477888999999999999988777766654 456667789999999999999999986 3566665544
Q ss_pred HHH
Q 013807 357 RQF 359 (436)
Q Consensus 357 krL 359 (436)
.+.
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 214
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=41.58 E-value=31 Score=26.97 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.0
Q ss_pred hhHHHHHHHHhhHHHHHHHHH
Q 013807 409 QALPYMIFLASPIFVILLIAV 429 (436)
Q Consensus 409 q~l~y~~~l~sPi~~v~~~A~ 429 (436)
.++.++++++.||+.|++++.
T Consensus 11 ~~flfl~v~l~PiLsV~~Vg~ 31 (47)
T TIGR02972 11 KALGFIIVVLFPILSVAGIGG 31 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999875
No 215
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.45 E-value=46 Score=27.59 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
.+.+..+.+..+=..|+|.+|+.+|..|++.+
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 33444555566666788888888888877765
No 216
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.28 E-value=2.1e+02 Score=31.47 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (436)
..+..|+-.+.-+++.+||+.|++|++.-.- -...+.......++...-|
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHhhh
Confidence 4566788889999999999999999987644 4555555555555554444
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=41.08 E-value=39 Score=37.11 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (436)
.-|-+.-.+|.+++..|+++..|.+|++|++-=.-.-..-.-|--||..||--++..+.|
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kA 74 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKA 74 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHH
Confidence 458888889999999999999999999998643222222223333455555555444443
No 218
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.91 E-value=74 Score=34.22 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=74.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHh---------hcccCc--cch------------------hHHH
Q 013807 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMN---------KMVFKS--ELH------------------GLAA 321 (436)
Q Consensus 271 ~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~---------~v~~~S--~LG------------------Geaq 321 (436)
...++.+.++-..|+.|..++.+|+|.++...|..|-. .++.++ -+| |.+.
T Consensus 49 q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n 128 (449)
T COG3014 49 QFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLIN 128 (449)
T ss_pred HhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHH
Confidence 34455556777889999999999999999999987732 333333 122 6888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHHH-----HHHhhhhhhhcccC--------C-CCcchHHHHHH
Q 013807 322 LQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMF-----SFQAMEMMKVRSSS--------D-KNTDYRNFFEA 387 (436)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly-----iLEAp~llKv~~~~--------~-~~t~Yd~Yf~~ 387 (436)
+.++.-|--.+..+.|+.=..+. -++..+||...| .-+-|+.-|.+-+| . .+.+|++||..
T Consensus 129 ~YkaLNYm~~nD~~~ArVEfnRa-----n~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~ 203 (449)
T COG3014 129 YYKALNYMLLNDSAKARVEFNRA-----NERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDK 203 (449)
T ss_pred HHHHhhHHHhcchhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 89999998888888887655543 223344444333 11122222222221 1 47899999998
Q ss_pred hhccc
Q 013807 388 FVEDK 392 (436)
Q Consensus 388 f~~~k 392 (436)
|...+
T Consensus 204 yea~~ 208 (449)
T COG3014 204 YEAYQ 208 (449)
T ss_pred HHhhc
Confidence 87643
No 219
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=39.30 E-value=36 Score=27.38 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhhHHHHHHHHHh
Q 013807 409 QALPYMIFLASPIFVILLIAVQ 430 (436)
Q Consensus 409 q~l~y~~~l~sPi~~v~~~A~~ 430 (436)
.++.+++|++.||+.|.+++.-
T Consensus 19 ~~flfl~~~l~PiL~v~~Vg~Y 40 (56)
T PF06796_consen 19 KAFLFLAVVLFPILAVAFVGGY 40 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999998753
No 220
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.17 E-value=40 Score=35.82 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-----hcCCCHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-----QSHPNALVSKR 355 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-----~sHP~~eVrKQ 355 (436)
....|-.+|..|+|.+||+-|..|++--.+++- ++..+|.|+=.-++.+.|+.+-..+ +.||.-.|-.+
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGyqpl----lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~ 220 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL----LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMT 220 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCCCch----hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence 455678899999999999999999987766664 5678899999999999999877665 46998776544
No 221
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.95 E-value=3.8e+02 Score=26.80 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC----------ccchhHHHHHHH
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----------SELHGLAALQWS 325 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----------S~LGGeaqLwLA 325 (436)
.....|...-++.|++++++.-..+-. .-.|.++.++..+|+....+... +...-...+.++
T Consensus 171 ~l~~~l~~~~~~~g~~i~~~al~~l~~--------~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~ 242 (367)
T PRK14970 171 DIKEHLAGIAVKEGIKFEDDALHIIAQ--------KADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVT 242 (367)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHH
Confidence 345556666667899998875444322 24589999999999987554322 011112222232
Q ss_pred HHHHhcCChHHHHHHHHHHh---cCCCHHHHHHHHHH
Q 013807 326 ICQDSLHRPKEARIMYEKLQ---SHPNALVSKRARQF 359 (436)
Q Consensus 326 iAydA~GR~~EAiaLYkkL~---sHP~~eVrKQAkrL 359 (436)
-|. ..|+..+|+.+|+.|. .+|..=+.--++++
T Consensus 243 ~ai-~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~f 278 (367)
T PRK14970 243 DLI-LENKIPELLLAFNEILRKGFDGHHFIAGLASHF 278 (367)
T ss_pred HHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 3578999999999984 35544333333333
No 222
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=38.93 E-value=1.9e+02 Score=23.13 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
...++.-++.++.+++.|.|..|+-+...|+.+.
T Consensus 5 ~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~ 38 (118)
T PF05168_consen 5 LEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKA 38 (118)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999888877664
No 223
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=38.72 E-value=37 Score=26.68 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 013807 322 LQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkk 343 (436)
+..|+.+|..|+.++|+.+|++
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~ 33 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKK 33 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4557889999999999999976
No 224
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=38.43 E-value=3.6e+02 Score=31.44 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (436)
..+...+|-+.+-|===|-+.+.+-+-|..--.-++.-++..|-.+||+|++.|| ....--+.|.+|--=|-.|--.-
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP--PEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhHHHH
Confidence 4556677877777766777888888888887778888899999999999999998 44455677888888888899999
Q ss_pred HHHHHHHHhc
Q 013807 337 ARIMYEKLQS 346 (436)
Q Consensus 337 AiaLYkkL~s 346 (436)
||++|++-.+
T Consensus 605 amsiyerat~ 614 (835)
T KOG2047|consen 605 AMSIYERATS 614 (835)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 225
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=38.24 E-value=1.6e+02 Score=25.51 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc-----cCccchhHHHHHHHHHHHhc
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV-----FKSELHGLAALQWSICQDSL 331 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~-----~~S~LGGeaqLwLAiAydA~ 331 (436)
+.+.+-+.++.+..+++.|++..+-.++-+|.+.+. .+-+-||++.-.|.--|+-+
T Consensus 25 Lyd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~ 85 (122)
T PF02561_consen 25 LYDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYM 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHH
Confidence 346777888999999999999999999999977653 34466899999988888754
No 226
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=38.00 E-value=38 Score=25.88 Aligned_cols=21 Identities=5% Similarity=0.320 Sum_probs=17.6
Q ss_pred hhHHHHHHHHhhHHHHHHHHH
Q 013807 409 QALPYMIFLASPIFVILLIAV 429 (436)
Q Consensus 409 q~l~y~~~l~sPi~~v~~~A~ 429 (436)
.++.++++++.||+.|.+++.
T Consensus 6 ~~flfl~~~l~PiLsV~~V~~ 26 (42)
T TIGR02973 6 NTFLFLAAVIWPVLSVITVGG 26 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999875
No 227
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=37.90 E-value=30 Score=25.82 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=18.9
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHHHhh
Q 013807 342 EKLQSH-PNALVSKRARQFMFSFQAM 366 (436)
Q Consensus 342 kkL~sH-P~~eVrKQAkrLlyiLEAp 366 (436)
.+|..| ++++|++.|++|+=-+..+
T Consensus 26 ~~l~k~~~~~~i~~~A~~Li~~Wk~~ 51 (53)
T PF08711_consen 26 NKLRKHSENPEIRKLAKELIKKWKRI 51 (53)
T ss_dssp HHHHHCTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhHh
Confidence 367788 9999999999998655443
No 228
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]
Probab=37.22 E-value=1e+02 Score=31.87 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=32.3
Q ss_pred HHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 013807 328 QDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAM 366 (436)
Q Consensus 328 ydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLEAp 366 (436)
++.+--+.=.+.++..|..||+.+|++.|+-|+=++.+-
T Consensus 39 ~ell~~Tr~g~~vn~~~Kk~~n~ev~~~ak~Lik~Wkk~ 77 (296)
T KOG1105|consen 39 LELLQETRTGMGVNEVLKKHKNEEVRSLAKKLIKSWKKL 77 (296)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 444555566678899999999999999999999998854
No 229
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.66 E-value=1.2e+02 Score=33.70 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQF 359 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrL 359 (436)
.++.|+..=+-+++.+|..+||+-++-...-+..+ =++.+|||+=+-.++..++|-.-|.++-.- ...+..|++|
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~L 546 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKAL 546 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHH
Confidence 45667777778889999999999655443333333 378899999888899999997767666544 4445566665
Q ss_pred H
Q 013807 360 M 360 (436)
Q Consensus 360 l 360 (436)
+
T Consensus 547 l 547 (559)
T KOG1155|consen 547 L 547 (559)
T ss_pred H
Confidence 4
No 230
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=36.58 E-value=82 Score=32.02 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhh-cccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNK-MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~-v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
+.+..++...+++.|.+.+|+..|+..+.. -..+.++. .+|-+|-.++..|+.+=|+.+|++|.
T Consensus 213 ~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~--~rL~~A~l~~~~g~~~lA~~ll~~L~ 277 (301)
T TIGR03362 213 WEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFH--WRLLLARLLEQAGKAELAQQLYAALD 277 (301)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445566778888999999999998875432 33333333 34445666788899999999999884
No 231
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=36.23 E-value=53 Score=20.49 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=19.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhc
Q 013807 324 WSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL~s 346 (436)
+..+|-..|+.++|..+|+++.+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 45578889999999999999874
No 232
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.20 E-value=86 Score=35.11 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc----cch--------------------------hHHHHHHHHHHHhc
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELH--------------------------GLAALQWSICQDSL 331 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----~LG--------------------------GeaqLwLAiAydA~ 331 (436)
..|++|..+|+.|.+.+|+=.||.|+..=|..- .|| =++-|-||+||-.-
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 579999999999999999999999887654332 122 14556677777777
Q ss_pred CChHHHHH-HHHHHhcCC
Q 013807 332 HRPKEARI-MYEKLQSHP 348 (436)
Q Consensus 332 GR~~EAia-LYkkL~sHP 348 (436)
|-..+|.. ||+.|+.||
T Consensus 367 g~q~~Al~~L~~Wi~~~p 384 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKP 384 (579)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 76666554 466667674
No 233
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=35.86 E-value=71 Score=29.31 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhh--------cCCcCCcchH----HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013807 245 ETAEARAAKEERTRQLLAAYKKS--------VGLNVDPKLK----SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (436)
Q Consensus 245 EteEEkaaR~~rtke~LaaYrk~--------~Gl~Vdp~~k----~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (436)
.+-+++..-.+...++|.+-+.. .|.+|+--+. .....+++.+..+++.|+|.+|...|..|++-+.+
T Consensus 70 ~~~~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~lv~ 149 (155)
T PF10938_consen 70 VPTPEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDGLVF 149 (155)
T ss_dssp ---HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-EE
T ss_pred CChHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcCeEE
Confidence 34556666666666666665544 4555554433 77788899999999999999999999998876655
Q ss_pred Cc
Q 013807 313 KS 314 (436)
Q Consensus 313 ~S 314 (436)
-|
T Consensus 150 ~s 151 (155)
T PF10938_consen 150 DS 151 (155)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 234
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.49 E-value=73 Score=33.04 Aligned_cols=90 Identities=21% Similarity=0.354 Sum_probs=58.3
Q ss_pred CccCcHHHHHHHHHHHHHHHHHHHhhcCCcCCcchH------------------HHHHHHH-----------HHHHHHHh
Q 013807 242 DVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLK------------------SECEKAL-----------KDGDSLMD 292 (436)
Q Consensus 242 e~lEteEEkaaR~~rtke~LaaYrk~~Gl~Vdp~~k------------------~e~eea~-----------~~Gk~Ame 292 (436)
+.|-.+=-++++..+..+.|..|-+-.-|+=...+. .-|+.++ +.|..+..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 334444456899999999999998776444221111 2233332 24889999
Q ss_pred CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807 293 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (436)
Q Consensus 293 rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (436)
.|+|.+|++.|.||+++=|-+- ..-=.|-+|-+.++..+
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne----~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNE----SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcH----HHHHHHHHHHHHhcCCC
Confidence 9999999999999998887765 22223445555554443
No 235
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=35.29 E-value=1e+02 Score=25.20 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHHHHHH
Q 013807 323 QWSICQDSLHRPKEARIMYEK--------LQSHPNALVSKRARQ 358 (436)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrKQAkr 358 (436)
..|+-.|..|+.++|+.+|.+ |..-+++..+..-++
T Consensus 11 ~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~ 54 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQ 54 (75)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 446889999999999999976 445677776654443
No 236
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=35.23 E-value=51 Score=27.46 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 312 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~ 312 (436)
.+...++.|-..=+.|.|.+|+++|..|++++-.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3444555556666789999999999999888754
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=35.13 E-value=1.1e+02 Score=33.27 Aligned_cols=87 Identities=9% Similarity=0.106 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (436)
.+..+..+.++.|++-+ .++|..-+....-|..|-.+...|++.+|++.|++|+++. +..+. .+.-.-.++.+
T Consensus 86 ~~lGryeEAIa~f~rAL--eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~~f~---~i~~DpdL~pl 158 (453)
T PLN03098 86 FSKGRVKDALAQFETAL--ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NLKFS---TILNDPDLAPF 158 (453)
T ss_pred HHcCCHHHHHHHHHHHH--hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--chhHH---HHHhCcchhhh
Confidence 45567888999998766 5556543332446889999999999999999999999972 11111 12222234556
Q ss_pred CChHHHHHHHHHHh
Q 013807 332 HRPKEARIMYEKLQ 345 (436)
Q Consensus 332 GR~~EAiaLYkkL~ 345 (436)
.+..+...|.+-+.
T Consensus 159 R~~pef~eLlee~r 172 (453)
T PLN03098 159 RASPEFKELQEEAR 172 (453)
T ss_pred cccHHHHHHHHHHH
Confidence 66666666666554
No 238
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=35.07 E-value=1.4e+02 Score=23.86 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHHHHH
Q 013807 322 LQWSICQDSLHRPKEARIMYEK--------LQSHPNALVSKRAR 357 (436)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrKQAk 357 (436)
+..|+-.|..|+.++|+.+|.+ ++.-|++..++.-+
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~ 53 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIR 53 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 3446789999999999999976 23456766554433
No 239
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=34.66 E-value=53 Score=29.22 Aligned_cols=63 Identities=24% Similarity=0.316 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc-CChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQSHPNALVSKRARQFMF 361 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~sHP~~eVrKQAkrLly 361 (436)
.--.=..|+..|+++.+=.+|.+.+... +-+ +|-.+.+..--.|-+|||++||-+|....-
T Consensus 11 ~~i~q~~A~~~~d~~~~Nr~~~k~~~~~------------------~eLk~r~gd~r~aLl~LL~hpn~~VRl~AA~~~L 72 (106)
T PF09450_consen 11 ISIAQGEAIDRGDARTANRLYDKMIRIY------------------DELKSRGGDQRDALLPLLKHPNMQVRLWAAAHTL 72 (106)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHH------------------HHHHHSTT-GGGGGGGGGGSS-HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH------------------HHHHhcCcchHHHHHHHHcCCChhHHHHHHHHHH
Confidence 3333456788999999888887754332 222 233333444556779999999999987654
Q ss_pred HH
Q 013807 362 SF 363 (436)
Q Consensus 362 iL 363 (436)
.+
T Consensus 73 ~~ 74 (106)
T PF09450_consen 73 RY 74 (106)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=34.10 E-value=94 Score=32.96 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=52.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh-------HHHHHHHHHHhcC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP-------KEARIMYEKLQSH 347 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~-------~EAiaLYkkL~sH 347 (436)
.++.|-.+|-.++|++|..+|..-.+.- .--++--....|.||..+|+. ++|..++++.-.+
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s---~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKES---KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 6788999999999999999998876632 233788888999999999999 9999999988543
No 241
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=34.06 E-value=75 Score=29.71 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=42.1
Q ss_pred HHHHHhCCchhhhhhHH----HHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHH
Q 013807 287 GDSLMDSGKLKEALPFY----EKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQ 358 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~l----EkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkr 358 (436)
++-.-..|+-+=.+.|| |+|++++|.=-+-+-++.+ +++|=-.. +|-.=+++||||+|-++-+.
T Consensus 57 A~FWR~~gd~~yELkYLqlASE~VltLiPQCp~~~C~afi------~sLGCCk~--ALl~F~KRHPNP~iA~~vq~ 124 (140)
T PF10952_consen 57 ADFWRSQGDSDYELKYLQLASEKVLTLIPQCPNTECEAFI------DSLGCCKK--ALLDFMKRHPNPEIARLVQH 124 (140)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhccCCCCcchHHHH------HhhhccHH--HHHHHHHhCCCHHHHHHHHh
Confidence 44444556655567776 4678888876666666653 45554444 45677899999999887553
No 242
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=34.00 E-value=1.8e+02 Score=31.16 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 357 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 357 (436)
...-..++.|+-+|..|-|+.|-..|..-++.= ++-=.+-=+|...|++....+.||..-++|.+|--..-+.+-.
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA 180 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA 180 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH
Confidence 455567888999999999999999998866643 3333455567888999999999999999999887776665554
Q ss_pred HH
Q 013807 358 QF 359 (436)
Q Consensus 358 rL 359 (436)
|+
T Consensus 181 qf 182 (389)
T COG2956 181 QF 182 (389)
T ss_pred HH
Confidence 43
No 243
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=33.35 E-value=75 Score=26.56 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
+..+..-...+..+=..|+|.+|+-+|.++.+.+
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4445556667777778999999999999877665
No 244
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.25 E-value=4.9e+02 Score=29.83 Aligned_cols=95 Identities=20% Similarity=0.160 Sum_probs=54.8
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLE 364 (436)
+.+--+|.-++..+|+..++ -++..+.+ .++=++| + +=.+||.++|.++|+.|.+|-..+..-+=+ ..++-=
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-~~~~~~~~-ll~L~AQ----v-lYrl~~ydealdiY~~L~kn~~dd~d~~~r-~nl~a~ 155 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-GLDRLDDK-LLELRAQ----V-LYRLERYDEALDIYQHLAKNNSDDQDEERR-ANLLAV 155 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-cccccchH-HHHHHHH----H-HHHHhhHHHHHHHHHHHHhcCCchHHHHHH-HHHHHH
Confidence 33445677888888888887 22322211 1222222 3 336899999999999998877776665432 222222
Q ss_pred hhhhhhh--cccCC--CCcchHHHHHHh
Q 013807 365 AMEMMKV--RSSSD--KNTDYRNFFEAF 388 (436)
Q Consensus 365 Ap~llKv--~~~~~--~~t~Yd~Yf~~f 388 (436)
++ .+-+ .+..+ ..+.|+-+|..-
T Consensus 156 ~a-~l~~~~~q~v~~v~e~syel~yN~A 182 (652)
T KOG2376|consen 156 AA-ALQVQLLQSVPEVPEDSYELLYNTA 182 (652)
T ss_pred HH-hhhHHHHHhccCCCcchHHHHHHHH
Confidence 22 1222 22322 466898887543
No 245
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=33.00 E-value=56 Score=20.30 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=19.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcC
Q 013807 324 WSICQDSLHRPKEARIMYEKLQSH 347 (436)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL~sH 347 (436)
+..+|=..|+.++|..+|+++..+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHccchHHHHHHHHHHHhHC
Confidence 445778889999999999998753
No 246
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=32.87 E-value=69 Score=26.30 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
+.+.++.+..+=..|+|.+|+.+|..+++.+
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4455566677778899999999999988765
No 247
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=31.93 E-value=3.4e+02 Score=29.69 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 309 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (436)
.....|-.|-.-+ +.||..... .|+.+..+..-|+-+.||+-|++|+++
T Consensus 53 Q~sDALt~yHaAv--e~dp~~Y~a---ifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 53 QLSDALTHYHAAV--EGDPNNYQA---IFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred hHHHHHHHHHHHH--cCCchhHHH---HHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 4555666776554 556654432 455555555555555555555555443
No 248
>PLN02789 farnesyltranstransferase
Probab=31.85 E-value=1.8e+02 Score=29.49 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=32.5
Q ss_pred HHHHHhCC-chhhhhhHHHHHHhhcccCccchhHHHHHH--HHHHHhcCCh--HHHHHHHHHH-hcCC
Q 013807 287 GDSLMDSG-KLKEALPFYEKVMNKMVFKSELHGLAALQW--SICQDSLHRP--KEARIMYEKL-QSHP 348 (436)
Q Consensus 287 Gk~AmerG-kYr~AV~~lEkA~~~v~~~S~LGGeaqLwL--AiAydA~GR~--~EAiaLYkkL-~sHP 348 (436)
|..+...| .|.+++.++++|+..-+-+. ++|- ..+++.+|+. ++++.+|+++ ..+|
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npkny------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp 139 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKNY------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDA 139 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcch------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc
Confidence 55566666 46777777777776544333 2343 4456666663 5667777444 3454
No 249
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=31.82 E-value=1.6e+02 Score=29.70 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcC-CCHHHHHHHHHHH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH-PNALVSKRARQFM 360 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH-P~~eVrKQAkrLl 360 (436)
..+-.++..|.-|+.-+|.+.||+.++.-+-.-.-+|. |-++-+|-+.|+..+|.+-++++.+| |.++ .+.+
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-----ar~~ 198 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--LLFARTLAAQGKYADAESAFEVAISYYPGPQ-----ARIY 198 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--HHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-----HHHH
Confidence 34555788999999999999999999877544444443 45688999999999999999999865 5544 3455
Q ss_pred HHHHhhhhhhhcccCCCCcchHHHHHHhhccccccc
Q 013807 361 FSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYP 396 (436)
Q Consensus 361 yiLEAp~llKv~~~~~~~t~Yd~Yf~~f~~~kt~y~ 396 (436)
|+- | +.+-+-.-..+..|...|+.....+.-|-
T Consensus 199 Y~e--~-La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 199 YAE--M-LAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHH--H-HHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 541 0 11111112246667777766666655554
No 250
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=31.62 E-value=60 Score=23.73 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhh
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNK 309 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (436)
...|.--+++++|.+|+.=|++++++
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45788999999999999999998765
No 251
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.60 E-value=1.2e+02 Score=34.93 Aligned_cols=121 Identities=8% Similarity=0.112 Sum_probs=86.8
Q ss_pred ccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCcCCcchH-HHHHHHHHHHHHHHhCCchhhh
Q 013807 221 VFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLK-SECEKALKDGDSLMDSGKLKEA 299 (436)
Q Consensus 221 vFPRP~NISkayGGGR~IrpGe~lEteEEkaaR~~rtke~LaaYrk~~Gl~Vdp~~k-~e~eea~~~Gk~AmerGkYr~A 299 (436)
+|-|-.||++----|-+|+ -+-.++...++|+.+..++.. +|..+..+.+ ..-.-....+...|+--+|-.|
T Consensus 301 ~~~~~~~~~~g~~~~sr~l-----~~~~~~L~~dE~I~e~F~~~~--t~~~lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s 373 (872)
T KOG4814|consen 301 LNSKNDSKFLGKAICSRFL-----ITTQSKLMNDEEIAESFENFS--TQMELTKEAISCIHTLLWNTAKKLFKMEKYVVS 373 (872)
T ss_pred HhhhcccchhhhhhhhHHH-----HHHHHHHhhHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555555322233333 355677888888888888854 4445555544 2222345778999999999999
Q ss_pred hhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013807 300 LPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 348 (436)
Q Consensus 300 V~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 348 (436)
+++|+.-|..++-.- +.=...|=.|+.||=.+.+.|.|...|+.-.+|-
T Consensus 374 ~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 374 IRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 999999988776532 2227778889999999999999999999998887
No 252
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=31.57 E-value=1.7e+02 Score=25.25 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHhcCChHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhhhhhcccCCCCcchHHHHHHhh
Q 013807 328 QDSLHRPKEARIMYEKLQSH--PNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFV 389 (436)
Q Consensus 328 ydA~GR~~EAiaLYkkL~sH--P~~eVrKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~~f~ 389 (436)
+.-+.+.+|.|++|+++.+. ..++.|.++.+++=-+++-.. -|++--.++..+-+++-++.
T Consensus 6 ~tK~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~-lVDGvPaQGG~~~~i~~~~i 68 (85)
T PF07240_consen 6 ATKIRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENN-LVDGVPAQGGFWGKIVKKII 68 (85)
T ss_pred HHHHhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhh-cccCcCCCCCchHHHHHHHH
Confidence 45567899999999999865 999999999999988877654 34443336666666666544
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=31.26 E-value=99 Score=33.68 Aligned_cols=59 Identities=12% Similarity=-0.010 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
|-.|..++=.|+..+|++++++|+.+-|++-. -+.+++|+-|-|. .+.++||++|-+-+
T Consensus 376 ~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 434 (458)
T PRK11906 376 YYRALVHFHNEKIEEARICIDKSLQLEPRRRK-AVVIKECVDMYVP--NPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCchhhH-HHHHHHHHHHHcC--CchhhhHHHHhhcc
Confidence 34466666678888888888888877766532 3566677656543 57788888876653
No 254
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.15 E-value=70 Score=26.51 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 013807 319 LAALQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkk 343 (436)
--....|+-+|..|+.+||+.+|+.
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~ 31 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKE 31 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3345678899999999999999975
No 255
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.75 E-value=2.4e+02 Score=26.61 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhc---ccCcc-----chhHHHHHHHHHHHhcCChHHHHHH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKM---VFKSE-----LHGLAALQWSICQDSLHRPKEARIM 340 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v---~~~S~-----LGGeaqLwLAiAydA~GR~~EAiaL 340 (436)
-.+|.+|+.-+.-|-|.+|...+-+||+.. |.--. +-+..--||+-|+--+||.+||+.-
T Consensus 10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~s 77 (144)
T PF12968_consen 10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQS 77 (144)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 357888999999999999999999999864 22221 2356778999999999999999754
No 256
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=30.69 E-value=2.2e+02 Score=26.95 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=63.0
Q ss_pred CcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHH
Q 013807 273 DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALV 352 (436)
Q Consensus 273 dp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eV 352 (436)
-|+..+. .+=.|..+|.||.+.+|+..|..+.+- ...-+...--+|.|+.+.|...==+--++-|.+.++++.
T Consensus 40 rP~~~e~---d~~dg~l~i~rg~w~eA~rvlr~l~~~----~~~~p~~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~~~a 112 (153)
T TIGR02561 40 RPNLKEL---DMFDGWLLIARGNYDEAARILRELLSS----AGAPPYGKALLALCLNAKGDAEWHVHADEVLARDADADA 112 (153)
T ss_pred CCCcccc---chhHHHHHHHcCCHHHHHHHHHhhhcc----CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCHhH
Confidence 3544433 444699999999999999988775443 222244445569999999986554455556678888888
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 013807 353 SKRARQFMFSFQAMEMMK 370 (436)
Q Consensus 353 rKQAkrLlyiLEAp~llK 370 (436)
.--.|.|.=.|+.|....
T Consensus 113 ~~Lv~al~g~~~~~~s~~ 130 (153)
T TIGR02561 113 VALVRALLGAQQPPASVA 130 (153)
T ss_pred HHHHHHHhccccCCcchH
Confidence 888888876666664443
No 257
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.55 E-value=2.9e+02 Score=22.60 Aligned_cols=69 Identities=14% Similarity=0.012 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCcCCcc-hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhH--HHHHHHHH
Q 013807 259 QLLAAYKKSVGLNVDPK-LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL--AALQWSIC 327 (436)
Q Consensus 259 e~LaaYrk~~Gl~Vdp~-~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGe--aqLwLAiA 327 (436)
+.|.+|-.-.+.+.... ...-+...+..+......|.+.+|+..++.|++..-...-..+. +-+|++..
T Consensus 19 d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l 90 (94)
T PF12862_consen 19 DALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANL 90 (94)
T ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 33444443343344433 12233346788999999999999999999999988666655543 34444443
No 258
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=30.38 E-value=2.2e+02 Score=24.25 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 309 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (436)
.+...++++.+|-.++..|++..|...+.++.+.
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4567788999999999999999999999999655
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=29.95 E-value=1.8e+02 Score=28.19 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHH-HHHHHHHHHHhCCchhhhhhHHHHHHh
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECE-KALKDGDSLMDSGKLKEALPFYEKVMN 308 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~e-ea~~~Gk~AmerGkYr~AV~~lEkA~~ 308 (436)
|-+.+.+.+..--+..+-.++++....+. -.-+.|...|+.++|.+|..+|+-++.
T Consensus 218 ~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 218 KIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 34445555555555667778888665554 456889999999999999999998764
No 260
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=29.64 E-value=1.8e+02 Score=26.58 Aligned_cols=72 Identities=19% Similarity=0.109 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 357 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 357 (436)
++|-..+ .-..+|+||+|.+|+ ++. .. .-.-...=|+|.|==.+|-.+.+-.-..+|...-+++...=|.
T Consensus 39 ~E~v~lI-r~~sLmNrG~Yq~AL--l~~-~~------~~~pdL~p~~AL~a~klGL~~~~e~~l~rla~~g~~~~q~Fa~ 108 (116)
T PF09477_consen 39 EEVVALI-RLSSLMNRGDYQEAL--LLP-QC------HCYPDLEPWAALCAWKLGLASALESRLTRLASSGSPELQAFAA 108 (116)
T ss_dssp HHHHHHH-HHHHHHHTT-HHHHH--HHH-TT------S--GGGHHHHHHHHHHCT-HHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred HHHHHHH-HHHHHHhhHHHHHHH--Hhc-cc------CCCccHHHHHHHHHHhhccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444444 356899999999993 222 11 1112345689999999999999988888898888887765554
Q ss_pred HH
Q 013807 358 QF 359 (436)
Q Consensus 358 rL 359 (436)
-|
T Consensus 109 ~~ 110 (116)
T PF09477_consen 109 GF 110 (116)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 261
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.56 E-value=44 Score=37.43 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=50.8
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCc---cchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHHH
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF 361 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly 361 (436)
.|.-+|..+.|.+|+.+|++|+.-+.-.. ..=--+...|.-+|--+++.+|||.-|++- ...|.------+--++|
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIY 499 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 48889999999999999999984332111 111123556788888899999999888875 34443333333444444
Q ss_pred HH
Q 013807 362 SF 363 (436)
Q Consensus 362 iL 363 (436)
.+
T Consensus 500 ~l 501 (611)
T KOG1173|consen 500 HL 501 (611)
T ss_pred HH
Confidence 43
No 262
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=29.39 E-value=51 Score=25.57 Aligned_cols=35 Identities=14% Similarity=-0.069 Sum_probs=26.5
Q ss_pred CccchhHHHHHHHHHHH-hcCChHHHHHHHHHHhcC
Q 013807 313 KSELHGLAALQWSICQD-SLHRPKEARIMYEKLQSH 347 (436)
Q Consensus 313 ~S~LGGeaqLwLAiAyd-A~GR~~EAiaLYkkL~sH 347 (436)
++=.|.++--||.-+.+ .+..++||+.|++.|..|
T Consensus 16 ~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~ 51 (74)
T PF00610_consen 16 NCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELLDH 51 (74)
T ss_dssp CEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHHHC
T ss_pred CEeEhHHHHHHHHHhccccccCHHHHHHHHHHHHHC
Confidence 44567777777775444 488999999999999754
No 263
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=29.31 E-value=2.1e+02 Score=22.57 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=24.8
Q ss_pred HHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHHHHH
Q 013807 323 QWSICQDSLHRPKEARIMYEK--------LQSHPNALVSKRAR 357 (436)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrKQAk 357 (436)
..|+-.|-.|+.++|+.+|.+ +..-|++..++.-+
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~ 53 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLR 53 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 346778999999999999875 34566666655433
No 264
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.05 E-value=96 Score=33.29 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHH
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA 320 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGea 320 (436)
....+++.+..|+++|-.+.|..||..|-.|..++ .+++|+.
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~---~ei~Ge~ 78 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELS---DEIYGEK 78 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHH---HHHhhhh
Confidence 45677889999999999999999999999998887 4555443
No 265
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=28.56 E-value=50 Score=25.83 Aligned_cols=35 Identities=9% Similarity=-0.208 Sum_probs=26.5
Q ss_pred cCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013807 312 FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH 347 (436)
Q Consensus 312 ~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH 347 (436)
.++=.|.++.-||..+.. +..++||+.|++.|..+
T Consensus 18 ~~~F~G~e~v~wL~~~~~-~~~r~eA~~l~~~ll~~ 52 (77)
T smart00049 18 PNCFTGSELVDWLMDNLE-IIDREEAVHLGQLLLDE 52 (77)
T ss_pred cceeEcHHHHHHHHHcCC-cCCHHHHHHHHHHHHHC
Confidence 445667788888877766 45569999999999754
No 266
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=28.43 E-value=4.1e+02 Score=26.77 Aligned_cols=85 Identities=28% Similarity=0.262 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcCCcCC--cchHHHHHHHHHHHHHHHh-------CCchhhhhhHHHHHHhhcccCccchhHHHHHHHH
Q 013807 256 RTRQLLAAYKKSVGLNVD--PKLKSECEKALKDGDSLMD-------SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSI 326 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd--p~~k~e~eea~~~Gk~Ame-------rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAi 326 (436)
-..+.+..|+....+.-+ .+..-.-+-++-.+..+++ ...+=+|+-.||.++.. |.-.=.+.|||+.
T Consensus 150 ~~~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~----s~~n~~~~LlLvr 225 (365)
T PF09797_consen 150 LAQELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKK----SPHNYQLKLLLVR 225 (365)
T ss_pred HHHHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHc----CCCcHHHHHHHHH
Confidence 567888999988766522 1111112233334555553 56667778788877665 4555678999999
Q ss_pred HHHhcCChHHHHHHHHHH
Q 013807 327 CQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 327 AydA~GR~~EAiaLYkkL 344 (436)
.|--+|-...|..+|..|
T Consensus 226 lY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 226 LYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 999999999999999987
No 267
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=28.09 E-value=2.7e+02 Score=30.25 Aligned_cols=88 Identities=13% Similarity=-0.031 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC-----ccchhHHHHHHHHHHHhcCChHHHHHHHH--------HH-
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-----SELHGLAALQWSICQDSLHRPKEARIMYE--------KL- 344 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~-----S~LGGeaqLwLAiAydA~GR~~EAiaLYk--------kL- 344 (436)
.|--.+-.+-..+-+|.+..|...++.+.+.+... ..+.-.+.+=.++.+++.|+.+.|...|. ..
T Consensus 360 ~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~ 439 (608)
T PF10345_consen 360 QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAAN 439 (608)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhc
Confidence 34455666889999999999999999988877543 33667788889999999999999999997 33
Q ss_pred hcCCCHHHHHHHH-HHHHHHHhh
Q 013807 345 QSHPNALVSKRAR-QFMFSFQAM 366 (436)
Q Consensus 345 ~sHP~~eVrKQAk-rLlyiLEAp 366 (436)
...+..+++==|. .+..|++.+
T Consensus 440 ~~~~~~El~ila~LNl~~I~~~~ 462 (608)
T PF10345_consen 440 RKSKFRELYILAALNLAIILQYE 462 (608)
T ss_pred cCCcchHHHHHHHHHHHHHhHhh
Confidence 4688888887765 566666644
No 268
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=28.08 E-value=3.6e+02 Score=28.63 Aligned_cols=96 Identities=8% Similarity=0.043 Sum_probs=55.9
Q ss_pred CchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh---cCChHHHHHHHHH-Hh--cCCCHHHHHHHHHHHHHHHhhh
Q 013807 294 GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS---LHRPKEARIMYEK-LQ--SHPNALVSKRARQFMFSFQAME 367 (436)
Q Consensus 294 GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA---~GR~~EAiaLYkk-L~--sHP~~eVrKQAkrLlyiLEAp~ 367 (436)
-.|..=|.+.|..-..-..+-.-+..|+.++|-|+-- .|.+++|+.++.+ |. ..+++++-=-.-| --
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR-------Iy 227 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR-------IY 227 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH-------HH
Confidence 3444455555544333222233377888899999988 8889999999888 54 3455552211111 10
Q ss_pred hh-hhcccCC----CCcchHHHHHHhhccccccc
Q 013807 368 MM-KVRSSSD----KNTDYRNFFEAFVEDKTNYP 396 (436)
Q Consensus 368 ll-Kv~~~~~----~~t~Yd~Yf~~f~~~kt~y~ 396 (436)
+= -+.+... -..+.+.|-.+|.-+++.|+
T Consensus 228 KD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 228 KDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 00 1111111 24467889999999988887
No 269
>PRK10316 hypothetical protein; Provisional
Probab=27.59 E-value=1.9e+02 Score=28.74 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=40.8
Q ss_pred hcCCcCCcchH----HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc
Q 013807 267 SVGLNVDPKLK----SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS 314 (436)
Q Consensus 267 ~~Gl~Vdp~~k----~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S 314 (436)
-.|++|+--.. .+.+........+++.|+|-+|-..|-+|.+-|.+-|
T Consensus 152 lAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk~a~d~iv~ds 203 (209)
T PRK10316 152 LAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALKGAEDGIIVDS 203 (209)
T ss_pred HcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHHhhccceEEee
Confidence 57888887654 6788899999999999999999999999988876544
No 270
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=27.39 E-value=44 Score=32.96 Aligned_cols=54 Identities=24% Similarity=0.490 Sum_probs=38.2
Q ss_pred ccccccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCcCCcc
Q 013807 217 STWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPK 275 (436)
Q Consensus 217 sTWGvFPRP~NISkayGGGR~IrpGe~lEteEEkaaR~~rtke~LaaYrk~~Gl~Vdp~ 275 (436)
++.|-||||.-+.++. +....|+ +..++=+++.++.+++.+..-+ +.||+|-..
T Consensus 3 t~vGS~prp~~l~~a~---~~~~~g~-~~~~~l~~~~~~ai~~~v~~Q~-~~GldiitD 56 (332)
T cd03311 3 TTVGSFPRPKELREAR---AKFKKGE-ISAEELREAEDDAIADAVKDQE-EAGLDVVTD 56 (332)
T ss_pred ceecCCCCCHHHHHHH---HHHhcCC-CCHHHHHHHHHHHHHHHHHHHH-HhCCCcccc
Confidence 5789999999998873 2223443 5566666777788888877754 888887544
No 271
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=27.16 E-value=85 Score=26.14 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
++++.-|+.++.+++.|.|..|+=+.++|+++.
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavEk~ 34 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAELA 34 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 356788999999999999999888877776654
No 272
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=26.94 E-value=1.2e+02 Score=36.15 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHh---hccc-Cccch------------hHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMN---KMVF-KSELH------------GLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~---~v~~-~S~LG------------GeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
-|+-++.+=.||+.+.|++||||+=. .|.+ =++-- -..--||+--+|+.|..+.|++.|..-+-
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 35568889999999999999999611 1100 00111 13345999999999999999999997654
Q ss_pred C
Q 013807 347 H 347 (436)
Q Consensus 347 H 347 (436)
|
T Consensus 941 ~ 941 (1416)
T KOG3617|consen 941 Y 941 (1416)
T ss_pred h
Confidence 3
No 273
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=26.51 E-value=1.8e+02 Score=32.12 Aligned_cols=137 Identities=13% Similarity=0.055 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCCcchH--HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHH--HH
Q 013807 251 AAKEERTRQLLAAYKKSVGLNVDPKLK--SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW--SI 326 (436)
Q Consensus 251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k--~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL--Ai 326 (436)
..+.+|++.+...|...++-..-.+.. ......|-.+...|.-|+|+.|.+.|..-+...|- -+-+|- +-
T Consensus 275 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~------N~~~~~~~~~ 348 (484)
T COG4783 275 QLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD------NPYYLELAGD 348 (484)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC------CHHHHHHHHH
Confidence 456667777777776666555544433 34456788899999999999999999997777773 333332 12
Q ss_pred HHHhcCChHHHHHHHHHHh-cCCCHHH-HH-HHHHHHHH---HHhhhhhhhccc-CC-CCcchHHHHHHhhcccc
Q 013807 327 CQDSLHRPKEARIMYEKLQ-SHPNALV-SK-RARQFMFS---FQAMEMMKVRSS-SD-KNTDYRNFFEAFVEDKT 393 (436)
Q Consensus 327 AydA~GR~~EAiaLYkkL~-sHP~~eV-rK-QAkrLlyi---LEAp~llKv~~~-~~-~~t~Yd~Yf~~f~~~kt 393 (436)
.|=..||.++|+..+++.. .-|+.-+ +- .|.-|+=. =||-+.++-... .| +-.+|+-...+..+..+
T Consensus 349 i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 349 ILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 3456899999999999986 5777421 11 11111100 023333332222 44 45678777777766543
No 274
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=26.43 E-value=4.8e+02 Score=23.56 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHH
Q 013807 275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAA 321 (436)
Q Consensus 275 ~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaq 321 (436)
.++...+.+++.++.++.+|.+..|-.+||-|=-+--...-+|-.+-
T Consensus 4 ~~~~~~~~el~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~H 50 (112)
T PF12487_consen 4 ALRPAYDAELEAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRVH 50 (112)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHHH
Confidence 46777888999999999999999999999998554444444554443
No 275
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=26.15 E-value=6.4e+02 Score=24.86 Aligned_cols=106 Identities=14% Similarity=0.066 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch-----------hHHHH
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAAL 322 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqL 322 (436)
.+.....|.++-++.|+.++++.-...-+.+ .|.+..+..-+||..-.+..+..+. .+..+
T Consensus 144 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~--------g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~i 215 (343)
T PRK06585 144 ERDLARLIDDELAEAGLRITPDARALLVALL--------GGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSL 215 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--------CCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccH
Confidence 4566777888889999999998654433332 2667777777777665554333332 12222
Q ss_pred H-HHHHHHhcCChHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHhhhh
Q 013807 323 Q-WSICQDSLHRPKEARIMYEKLQ---SHPNALVSKRARQFMFSFQAMEM 368 (436)
Q Consensus 323 w-LAiAydA~GR~~EAiaLYkkL~---sHP~~eVrKQAkrLlyiLEAp~l 368 (436)
+ |+-| =..|+...|+.++++|. .||..=+.--+++++=.+++..+
T Consensus 216 f~l~da-i~~~~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~ 264 (343)
T PRK06585 216 DDAADA-ALAGDLAAFERALDRALAEGTAPVLILRAALRHFQRLHIVRLK 264 (343)
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222 24567778999999995 46765555555555555555444
No 276
>PF05969 PSII_Ycf12: Photosystem II complex subunit Ycf12; InterPro: IPR010284 This family represents Ycf12, a core subunit of photosystem II; its function is unknown []. ; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3BZ2_y 3PRR_y 3PRQ_y 4FBY_m 3KZI_y 3BZ1_y 3A0B_y 3A0H_y 3ARC_Y.
Probab=25.61 E-value=80 Score=23.13 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=15.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHhhcc
Q 013807 410 ALPYMIFLASPIFVILLIAVQRGS 433 (436)
Q Consensus 410 ~l~y~~~l~sPi~~v~~~A~~k~~ 433 (436)
+...+|++..|++ ++++|.|||+
T Consensus 10 ~~l~liv~aGP~V-I~lLa~r~Gn 32 (33)
T PF05969_consen 10 TSLALIVLAGPLV-IFLLAARKGN 32 (33)
T ss_dssp HHHHHHHHHHHHH-HHHHHHCT--
T ss_pred HHHHHHHHcccHH-hhHHHhhcCC
Confidence 3556677778875 5678899987
No 277
>PF05235 CHAD: CHAD domain; InterPro: IPR007899 The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family IPR008172 from INTERPRO. It has conserved histidines that may chelate metals [].; PDB: 3E0S_B.
Probab=25.39 E-value=1.8e+02 Score=26.78 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccC--------ccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCC----CH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--------SELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP----NA 350 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~--------S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP----~~ 350 (436)
+.+.-..+.....|...+..++..+..-+.. ..+.--+.-.+.-.| ......+..+..+| --
T Consensus 103 ~~~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~lH 176 (231)
T PF05235_consen 103 AREKLLEALRSARYRRLLLELEAWLAAPPWLTPAEEEASEPLRKFARRRLRRRY------RKLRKALRALDREPDDEELH 176 (231)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHT--S---TTSTTTTSBHHHHHHHHHHHHH------HHHHHHH--------THHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhCccccccccccccccHHHHHHHHHHHHH------HHHHHHHHHhhhcCChHHHH
Confidence 3344456677777877777777765332222 122222222222222 22223333332111 34
Q ss_pred HHHHHHHHHHHHHHhhh
Q 013807 351 LVSKRARQFMFSFQAME 367 (436)
Q Consensus 351 eVrKQAkrLlyiLEAp~ 367 (436)
++||++|+|+|.+|.-.
T Consensus 177 ~lR~~~K~lRY~~e~~~ 193 (231)
T PF05235_consen 177 RLRKAAKRLRYALEFFA 193 (231)
T ss_dssp HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999999999653
No 278
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=24.76 E-value=2.7e+02 Score=28.38 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN 349 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 349 (436)
+..-..|-.++..|+..+|-..|-+|+++.+..-..= =.++|-|.--|+.++|.++-......|.
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~----nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA----NNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh----hhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 3345568888999999999999999988886655443 3455666668999999999888876555
No 279
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=24.76 E-value=4.2e+02 Score=33.33 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHh--------------CCchhhhhhHHHHHHhhcccCccchhHHHHH
Q 013807 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMD--------------SGKLKEALPFYEKVMNKMVFKSELHGLAALQ 323 (436)
Q Consensus 258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~Ame--------------rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw 323 (436)
.|+|+=+-.=++|++-=..++.|++.|+.+-++++ .+++.+|-++|+.-+.+.. +++ .+-+.
T Consensus 1494 eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~---~vW~~ 1569 (1710)
T KOG1070|consen 1494 EEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTR---KVWIM 1569 (1710)
T ss_pred HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chh---hHHHH
Confidence 45666665566677766688888888888888887 5677888888888776653 221 33344
Q ss_pred HHHHHHhcCChHHHHHHHHH-Hh---cCCCHHHHHHHHHHHHHHH
Q 013807 324 WSICQDSLHRPKEARIMYEK-LQ---SHPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 324 LAiAydA~GR~~EAiaLYkk-L~---sHP~~eVrKQAkrLlyiLE 364 (436)
|+..+=..+..++|+.+-++ |+ +|-|.++=.|-.||.|-.=
T Consensus 1570 y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1570 YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 55555555555556555443 33 5778999999999998655
No 280
>PLN03218 maturation of RBCL 1; Provisional
Probab=24.54 E-value=4.1e+02 Score=31.68 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=31.6
Q ss_pred HHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
+...|++.+|++.|+...+. .-...-.+--.|..+|-..|+.++|+.+|+.+..
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~---G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQ---GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33455566666665554432 1112223444566677778888888888888753
No 281
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.46 E-value=3.9e+02 Score=29.14 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=34.2
Q ss_pred ccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 013807 314 SELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPNALVSKRARQFMFS 362 (436)
Q Consensus 314 S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~~eVrKQAkrLlyi 362 (436)
+.+---+.--||||-..+||..||+.|.+.|.+ .|-..+-.--..|+-.
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEa 320 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEA 320 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 344444555699999999999999999999964 5654444444445443
No 282
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=24.36 E-value=51 Score=33.51 Aligned_cols=53 Identities=23% Similarity=0.356 Sum_probs=35.4
Q ss_pred ccccccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCcCCc
Q 013807 217 STWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDP 274 (436)
Q Consensus 217 sTWGvFPRP~NISkayGGGR~IrpGe~lEteEEkaaR~~rtke~LaaYrk~~Gl~Vdp 274 (436)
++.|-||||.-+-++. +..+.|+ +..++-+++-++.+++.++. -++.||+|-.
T Consensus 6 t~VGS~prp~~l~~~~---~~~~~g~-i~~~~l~~~~~~ai~~~V~~-Q~~aGldiit 58 (339)
T PRK09121 6 STAGSLPKPSWLAEPE---TLWSPWK-LQGEELIEGKQDALRLSLQE-QEDAGIDIVS 58 (339)
T ss_pred ceecCCCCCHHHHHHH---HHHHcCC-CCHHHHHHHHHHHHHHHHHH-HHHhCCCcee
Confidence 6789999999888774 3344454 54555556666667666665 4477887644
No 283
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=24.25 E-value=1.5e+02 Score=31.44 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCcchHHHHHH
Q 013807 325 SICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEA 387 (436)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~~ 387 (436)
+.+|--+|..+||+.||+++ +-||--+ +..++|.+. ++.++-.+.-+..|..|...
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e------~~nk~lm~~-la~~gD~is~~khyerya~v 342 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSE------QDNKGLMAS-LATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhh------HHHHHHHHH-HHHhccchhhhhHHHHHHHH
No 284
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=23.81 E-value=34 Score=37.91 Aligned_cols=66 Identities=27% Similarity=0.332 Sum_probs=35.9
Q ss_pred CccccceeeecccccccccccccCCCCCCCCccccCCCCCCCCCceEEEecCCCCCCCcccCCCCCCCccccccccCccc
Q 013807 138 GKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTSKFGESTVLRPGPKQEENLEFYKPKVS 217 (436)
Q Consensus 138 ~kk~~~~~~~~df~gl~f~~kk~~~g~p~gl~~~~~~~~~~~lpeve~i~~d~~~f~~~~~~~~~~~~~~~~d~YKPkVs 217 (436)
+.+|++.+-.- =|.|+-.|. +-.-|++.++ .+|-|--..+|.+-+ ..-|.+...|.+-
T Consensus 453 Gp~~GyvyQKa---ylEfF~~k~---~~~~l~~~~k-----~~~~vtY~a~n~~g~-----------~~tn~~~~~~nAV 510 (590)
T KOG0564|consen 453 GPPGGYVYQKA---YLEFFVSKE---LLDKLIEKLK-----ALPSVTYHAVNKKGE-----------FVTNADESDPNAV 510 (590)
T ss_pred CCCCCeEeehh---hhHHhcCHH---HHHHHHHHHh-----cccceEEEEeccccc-----------cccCCCCCCCcee
Confidence 33677766651 122332222 2233455555 456676666665442 1224556678999
Q ss_pred cccccCCC
Q 013807 218 TWGVFPRP 225 (436)
Q Consensus 218 TWGvFPRP 225 (436)
||||||.-
T Consensus 511 TWGVFPgr 518 (590)
T KOG0564|consen 511 TWGVFPGR 518 (590)
T ss_pred EeeccCCC
Confidence 99999953
No 285
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=23.05 E-value=1e+02 Score=23.15 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHh
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMN 308 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~ 308 (436)
.|+.++.+++-|++..|.+.|+.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46788999999999999999999885
No 286
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=22.95 E-value=1.2e+02 Score=27.17 Aligned_cols=69 Identities=17% Similarity=0.058 Sum_probs=45.2
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCcchHHHHHHh
Q 013807 313 KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS----HPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAF 388 (436)
Q Consensus 313 ~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s----HP~~eVrKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~~f 388 (436)
++=+|-++-=||.-|-..+ -+.||+.||+.|.. +|....+|-|.+ ++. ++ .++.+.++.+=.|.+.|
T Consensus 30 ~CF~Gse~VDWLv~~~~~i-~R~EAv~l~q~Lmd~gli~hV~~~s~~~~~-----~~~--~~-~~f~d~s~aly~F~~~~ 100 (109)
T cd04444 30 KTFLGSALVDWLISNSFAA-SRLEAVTLASMLMEENFLRPVGVRSMGAIR-----SGD--LA-EQFLDDSTALYTFAESY 100 (109)
T ss_pred ccccchHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCchhhHHHHhhhhhh-----ccc--cc-cccccCchHHHHhHHHH
Confidence 4567788888999987777 88999999999963 566666666554 111 11 22344555665666665
Q ss_pred hc
Q 013807 389 VE 390 (436)
Q Consensus 389 ~~ 390 (436)
-.
T Consensus 101 ~~ 102 (109)
T cd04444 101 KK 102 (109)
T ss_pred Hh
Confidence 43
No 287
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.68 E-value=64 Score=35.39 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013807 319 LAALQWSICQDSLHRPKEARIMYEKLQSH 347 (436)
Q Consensus 319 eaqLwLAiAydA~GR~~EAiaLYkkL~sH 347 (436)
.+++.++.|||-+++.++|+++|++=.+|
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 45667789999999999999999985433
No 288
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=22.67 E-value=1.2e+02 Score=24.90 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
++.+...=..|.|.+|+.+|..+++.+
T Consensus 10 ~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 10 IRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333344444466666666666655543
No 289
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=22.00 E-value=3.5e+02 Score=20.63 Aligned_cols=28 Identities=18% Similarity=0.110 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013807 334 PKEARIMYEKLQSHPNALVSKRARQFMF 361 (436)
Q Consensus 334 ~~EAiaLYkkL~sHP~~eVrKQAkrLly 361 (436)
..+++....++-+|+++.||.+|-+-|-
T Consensus 29 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 56 (88)
T PF13646_consen 29 DPEAIPALIELLKDEDPMVRRAAARALG 56 (88)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4466666666667777777777655544
No 290
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=21.82 E-value=2.6e+02 Score=29.74 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHH--HHHHHHHHhcCC--hHHHHHHHHH
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAA--LQWSICQDSLHR--PKEARIMYEK 343 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaq--LwLAiAydA~GR--~~EAiaLYkk 343 (436)
...........+.+|++++|..|...|+...+.... .+.....+ ..++.||.+=.+ +++|...-++
T Consensus 127 ~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 127 NVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLS-AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccC-hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 333445566788999999999999999999887443 33444333 347888887554 6677666654
No 291
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=21.54 E-value=1.2e+02 Score=34.71 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.|+.....|+.++|+.++.+.++++.+- .=||+.---+.+-+-.+|+.+||...|+.=
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~----~eHgeslAmkGL~L~~lg~~~ea~~~vr~g 67 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKF----PEHGESLAMKGLTLNCLGKKEEAYELVRLG 67 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhC----CccchhHHhccchhhcccchHHHHHHHHHH
Confidence 4666777899999999999999998843 568888777777889999999999998863
No 292
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.35 E-value=2e+02 Score=27.58 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=38.8
Q ss_pred hhhhHHHHHHhhcc--cCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 298 EALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 298 ~AV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..+++|++|++... ...|+.-.+.+++|.-|-.+|+.++|..+++.+.
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45677777766544 2367888899999999999999999999999984
No 293
>PF13041 PPR_2: PPR repeat family
Probab=21.17 E-value=1.1e+02 Score=21.72 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=18.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhcC
Q 013807 325 SICQDSLHRPKEARIMYEKLQSH 347 (436)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL~sH 347 (436)
--+|-..|+.++|..+|+++..+
T Consensus 10 i~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 10 ISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHc
Confidence 34567789999999999999743
No 294
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=21.14 E-value=1.4e+02 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
..|.+.++++..++..|++..|.-+|-+.++++
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 678899999999999999999999888765544
No 295
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=21.09 E-value=86 Score=22.69 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHh-cCCCHHH
Q 013807 334 PKEARIMYEKLQ-SHPNALV 352 (436)
Q Consensus 334 ~~EAiaLYkkL~-sHP~~eV 352 (436)
.+-|+++|+++. -||+..+
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~ 22 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKN 22 (32)
T ss_pred HHHHHHHHHHHHHhCCCchH
Confidence 578999999996 7998764
No 296
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=20.81 E-value=8.8e+02 Score=26.63 Aligned_cols=89 Identities=15% Similarity=0.060 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhhcCCc----------CCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHH
Q 013807 253 KEERTRQLLAAYKKSVGLN----------VDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL 322 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~----------Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqL 322 (436)
|.+-+.+++..|..+..-+ ..+.. ..+-..|=.++-+--.|+|.+|+++.++|++.-|.- -+.-+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~-~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~----~ely~ 232 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPS-TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL----VELYM 232 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHH
Confidence 3456777777887664221 11111 122345666777778999999999999999987553 46678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhc
Q 013807 323 QWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkkL~s 346 (436)
+.|-+|--.|+.++|....+.-+.
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888888888888877776654
No 297
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.75 E-value=1e+03 Score=25.92 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch------------hHHHH
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------GLAAL 322 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------------GeaqL 322 (436)
..+.+.|...-++.|++++++.-..+ .. +-.|.++.|+..||+++.. ...+. .+...
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~i---a~-----~s~GdlR~aln~Lekl~~~---~~~It~~~V~~~l~~~~~~~if 246 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLV---AR-----LADGAMRDAESLLERLLAL---GTPVTRKQVEEALGLPPQERLR 246 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH---HH-----HcCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHCCCcHHHHH
Confidence 34555666666677888877643332 22 2359999999999997543 11121 12233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHh
Q 013807 323 QWSICQDSLHRPKEARIMYEKLQS---HPNALVSKRARQFMFSFQA 365 (436)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkkL~s---HP~~eVrKQAkrLlyiLEA 365 (436)
.+.-++ ..++.++|+.+++.|.. +|..-++.-.++++-.|.+
T Consensus 247 ~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~ 291 (504)
T PRK14963 247 GIAAAL-AQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYA 291 (504)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 344444 44789999999999963 3444455555555544443
No 298
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=20.70 E-value=1.4e+02 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=19.6
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhhcc
Q 013807 409 QALPYMIFLASPIFVILLIAVQRGS 433 (436)
Q Consensus 409 q~l~y~~~l~sPi~~v~~~A~~k~~ 433 (436)
-.+|-.++|....+++|+.|+++|.
T Consensus 6 ~LIpiSl~l~~~~l~~f~Wavk~GQ 30 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLWSLKSGQ 30 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3467777788888888999998874
No 299
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=20.39 E-value=1.7e+02 Score=29.12 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCch
Q 013807 245 ETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKL 296 (436)
Q Consensus 245 EteEEkaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkY 296 (436)
+|+|||++|++.....|..=+ .|-=+.--.|.+++..+..+.+.|.-
T Consensus 96 ~teEEK~~R~~~lQ~Alk~Aa-----~vP~~ia~~~~~~l~l~e~l~~~gNk 142 (208)
T COG3404 96 STEEEKAARRKALQNALKEAA-----KVPLDIATLMVDLLELLEKLVEKGNK 142 (208)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHHhccH
Confidence 699999999999998886633 33333446777788888888887754
No 300
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=20.37 E-value=65 Score=32.41 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=37.8
Q ss_pred cCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 268 VGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 268 ~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
.++.++++...++++..+=+..|++.-++..|+..|++|+++|
T Consensus 337 ~~~~~~~~~i~~aQK~aK~AiSAL~feDv~tA~~~L~~AL~lL 379 (380)
T PF04652_consen 337 SGIMPDPEQIAKAQKHAKFAISALNFEDVPTAIKELRKALELL 379 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccC
Confidence 3556778888999999999999999999999999999999986
No 301
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=20.33 E-value=2.3e+02 Score=27.49 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhh----cccCccchhHHHHHHHHHH-HhcCChHHHHHHHHH
Q 013807 297 KEALPFYEKVMNK----MVFKSELHGLAALQWSICQ-DSLHRPKEARIMYEK 343 (436)
Q Consensus 297 r~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAy-dA~GR~~EAiaLYkk 343 (436)
..|...|++|++. +++...+.=-..|.+++.| +-+|..++|+.|.++
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~ 194 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQ 194 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
No 302
>PF12854 PPR_1: PPR repeat
Probab=20.07 E-value=1.2e+02 Score=20.84 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=16.1
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 013807 324 WSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL 344 (436)
|.-+|=..||.++|+.+.++.
T Consensus 13 lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 13 LIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHhC
Confidence 455677888999998887754
Done!