Query 013807
Match_columns 436
No_of_seqs 68 out of 70
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 17:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gyz_A Chaperone protein IPGC; 98.4 1.6E-06 5.6E-11 73.5 11.3 102 254-364 49-151 (151)
2 4gcn_A Protein STI-1; structur 98.4 2.2E-06 7.4E-11 68.8 9.9 102 253-359 20-125 (127)
3 2xev_A YBGF; tetratricopeptide 98.2 1.2E-05 4.1E-10 61.2 10.7 105 257-364 18-123 (129)
4 3ma5_A Tetratricopeptide repea 98.0 4E-05 1.4E-09 58.8 9.3 77 281-361 8-88 (100)
5 3qky_A Outer membrane assembly 98.0 3E-05 1E-09 67.1 9.3 81 283-364 151-242 (261)
6 2l6j_A TPR repeat-containing p 98.0 8.3E-05 2.8E-09 54.9 10.3 67 280-350 4-71 (111)
7 3k9i_A BH0479 protein; putativ 97.9 7E-05 2.4E-09 58.0 9.5 90 259-354 8-99 (117)
8 2v5f_A Prolyl 4-hydroxylase su 97.9 9.7E-05 3.3E-09 58.2 10.0 73 281-353 6-82 (104)
9 1elr_A TPR2A-domain of HOP; HO 97.8 0.0002 7E-09 53.1 10.3 83 281-363 39-125 (131)
10 4gco_A Protein STI-1; structur 97.8 9.4E-05 3.2E-09 59.5 9.1 72 271-349 7-79 (126)
11 2xcb_A PCRH, regulatory protei 97.8 9.7E-05 3.3E-09 59.1 9.1 100 255-363 32-136 (142)
12 3rkv_A Putative peptidylprolyl 97.8 3.9E-05 1.3E-09 62.1 6.8 68 278-345 9-90 (162)
13 2vgx_A Chaperone SYCD; alterna 97.8 0.00013 4.6E-09 59.9 9.9 102 254-364 34-140 (148)
14 2yhc_A BAMD, UPF0169 lipoprote 97.8 6.6E-05 2.3E-09 64.5 8.4 71 280-351 4-75 (225)
15 3upv_A Heat shock protein STI1 97.8 0.0001 3.4E-09 56.9 8.7 66 280-349 4-70 (126)
16 2xev_A YBGF; tetratricopeptide 97.8 0.00011 3.6E-09 56.0 8.4 68 282-350 4-72 (129)
17 2dba_A Smooth muscle cell asso 97.8 0.00056 1.9E-08 52.4 12.3 90 254-349 41-131 (148)
18 4gcn_A Protein STI-1; structur 97.7 0.00015 5.1E-09 58.0 9.1 64 278-345 6-69 (127)
19 4ga2_A E3 SUMO-protein ligase 97.7 0.0003 1E-08 57.6 10.5 85 256-349 12-97 (150)
20 2kck_A TPR repeat; tetratricop 97.7 0.00026 9E-09 51.3 8.6 66 282-349 42-109 (112)
21 3sz7_A HSC70 cochaperone (SGT) 97.6 0.00023 8E-09 57.6 8.8 82 255-345 25-106 (164)
22 2kc7_A BFR218_protein; tetratr 97.6 0.00013 4.3E-09 54.0 6.7 64 283-350 3-68 (99)
23 1na3_A Designed protein CTPR2; 97.6 0.001 3.4E-08 47.5 11.0 67 280-350 9-76 (91)
24 2kat_A Uncharacterized protein 97.6 0.00082 2.8E-08 51.3 11.2 76 261-345 5-80 (115)
25 3qky_A Outer membrane assembly 97.6 0.00028 9.7E-09 61.0 9.5 69 280-349 15-84 (261)
26 1elw_A TPR1-domain of HOP; HOP 97.5 0.00038 1.3E-08 50.7 8.0 66 280-349 4-70 (118)
27 3gyz_A Chaperone protein IPGC; 97.5 0.00031 1.1E-08 59.5 8.2 68 278-349 34-102 (151)
28 2yhc_A BAMD, UPF0169 lipoprote 97.5 0.001 3.5E-08 57.1 11.4 65 284-349 151-216 (225)
29 2lni_A Stress-induced-phosphop 97.5 0.00044 1.5E-08 51.7 8.0 63 279-345 15-77 (133)
30 2xcb_A PCRH, regulatory protei 97.5 0.00059 2E-08 54.5 9.3 73 270-349 11-84 (142)
31 1elr_A TPR2A-domain of HOP; HO 97.5 0.00058 2E-08 50.6 8.5 63 279-345 3-65 (131)
32 3q49_B STIP1 homology and U bo 97.5 0.00057 1.9E-08 52.4 8.7 66 280-349 9-75 (137)
33 2dba_A Smooth muscle cell asso 97.5 0.001 3.4E-08 50.9 10.0 70 279-349 27-97 (148)
34 1a17_A Serine/threonine protei 97.5 0.00076 2.6E-08 52.6 9.4 57 284-344 51-107 (166)
35 2vgx_A Chaperone SYCD; alterna 97.5 0.00056 1.9E-08 56.2 9.0 72 271-349 15-87 (148)
36 3upv_A Heat shock protein STI1 97.4 0.00097 3.3E-08 51.3 9.8 86 253-347 16-102 (126)
37 4gco_A Protein STI-1; structur 97.4 0.0011 3.9E-08 53.1 10.4 89 253-350 25-114 (126)
38 1hxi_A PEX5, peroxisome target 97.4 0.00024 8.2E-09 56.5 6.3 87 254-349 30-117 (121)
39 2lni_A Stress-induced-phosphop 97.4 0.0031 1.1E-07 47.1 11.7 87 255-350 30-117 (133)
40 2vyi_A SGTA protein; chaperone 97.4 0.0014 4.9E-08 48.2 9.6 68 278-349 10-78 (131)
41 2kck_A TPR repeat; tetratricop 97.4 0.0014 4.8E-08 47.4 9.1 63 283-349 9-72 (112)
42 2fbn_A 70 kDa peptidylprolyl i 97.4 0.00077 2.6E-08 56.2 8.8 72 278-349 36-120 (198)
43 3urz_A Uncharacterized protein 97.3 0.00053 1.8E-08 58.5 7.8 67 280-350 4-87 (208)
44 2hr2_A Hypothetical protein; a 97.3 0.00046 1.6E-08 61.5 7.6 69 277-345 8-84 (159)
45 1hxi_A PEX5, peroxisome target 97.3 0.00074 2.5E-08 53.7 8.0 65 281-349 18-83 (121)
46 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0028 9.5E-08 51.2 11.5 70 276-349 7-77 (164)
47 4i17_A Hypothetical protein; T 97.3 0.0018 6.2E-08 54.4 10.5 64 282-349 9-74 (228)
48 3vtx_A MAMA; tetratricopeptide 97.2 0.0016 5.5E-08 52.7 9.3 64 283-350 8-72 (184)
49 1elw_A TPR1-domain of HOP; HOP 97.2 0.0035 1.2E-07 45.4 10.1 65 281-349 39-104 (118)
50 3qwp_A SET and MYND domain-con 97.2 0.00066 2.3E-08 67.2 8.0 125 217-344 194-355 (429)
51 2vyi_A SGTA protein; chaperone 97.2 0.0045 1.6E-07 45.5 10.6 65 281-349 47-112 (131)
52 2pl2_A Hypothetical conserved 97.2 0.0021 7.1E-08 55.2 10.1 86 255-350 98-184 (217)
53 1a17_A Serine/threonine protei 97.2 0.008 2.7E-07 46.7 12.1 71 275-349 8-79 (166)
54 3vtx_A MAMA; tetratricopeptide 97.1 0.0017 5.9E-08 52.6 8.4 63 283-349 110-173 (184)
55 3q49_B STIP1 homology and U bo 97.1 0.0022 7.5E-08 49.1 8.5 84 253-345 21-104 (137)
56 3rkv_A Putative peptidylprolyl 97.1 0.003 1E-07 50.9 9.7 67 280-350 63-130 (162)
57 3ro2_A PINS homolog, G-protein 97.1 0.0014 4.7E-08 55.5 7.9 64 282-345 45-110 (338)
58 1na0_A Designed protein CTPR3; 97.1 0.007 2.4E-07 44.1 10.7 65 282-350 45-110 (125)
59 2fbn_A 70 kDa peptidylprolyl i 97.1 0.0072 2.4E-07 50.3 12.0 75 281-359 89-165 (198)
60 3ieg_A DNAJ homolog subfamily 97.1 0.0033 1.1E-07 54.2 10.1 68 282-349 236-304 (359)
61 3urz_A Uncharacterized protein 97.1 0.0046 1.6E-07 52.7 10.9 74 284-361 58-132 (208)
62 4a1s_A PINS, partner of inscut 97.1 0.0015 5.2E-08 58.9 8.1 65 281-345 87-153 (411)
63 3uq3_A Heat shock protein STI1 97.0 0.0025 8.5E-08 52.7 8.5 63 278-345 3-65 (258)
64 1hh8_A P67PHOX, NCF-2, neutrop 97.0 0.0057 2E-07 50.3 10.7 91 257-352 53-156 (213)
65 1na0_A Designed protein CTPR3; 97.0 0.0044 1.5E-07 45.2 8.9 66 280-349 9-75 (125)
66 4abn_A Tetratricopeptide repea 97.0 0.0087 3E-07 58.2 13.4 77 281-361 103-181 (474)
67 3ro3_A PINS homolog, G-protein 97.0 0.0031 1E-07 47.7 8.0 68 278-345 7-76 (164)
68 3uq3_A Heat shock protein STI1 97.0 0.0074 2.5E-07 49.8 11.0 98 256-359 20-121 (258)
69 2gw1_A Mitochondrial precursor 96.9 0.0028 9.5E-08 58.2 8.9 81 255-345 20-100 (514)
70 3sf4_A G-protein-signaling mod 96.9 0.0023 7.7E-08 56.6 7.9 89 255-345 23-114 (406)
71 3qou_A Protein YBBN; thioredox 96.9 0.0045 1.6E-07 55.8 9.7 71 279-353 116-187 (287)
72 1ihg_A Cyclophilin 40; ppiase 96.9 0.0023 7.8E-08 61.2 8.1 55 286-344 279-333 (370)
73 4f3v_A ESX-1 secretion system 96.9 0.0054 1.9E-07 58.8 10.6 95 251-349 145-240 (282)
74 3u4t_A TPR repeat-containing p 96.9 0.003 1E-07 53.4 7.9 61 283-344 40-100 (272)
75 2c2l_A CHIP, carboxy terminus 96.9 0.0038 1.3E-07 56.3 9.0 83 254-345 17-99 (281)
76 2pl2_A Hypothetical conserved 96.9 0.00069 2.4E-08 58.2 4.0 85 255-349 132-216 (217)
77 1xnf_A Lipoprotein NLPI; TPR, 96.9 0.012 4.2E-07 49.3 11.4 62 280-345 43-104 (275)
78 3edt_B KLC 2, kinesin light ch 96.8 0.0088 3E-07 49.7 10.1 69 278-346 83-155 (283)
79 4i17_A Hypothetical protein; T 96.8 0.013 4.3E-07 49.2 11.2 68 282-349 78-149 (228)
80 2hr2_A Hypothetical protein; a 96.8 0.0037 1.3E-07 55.6 8.3 92 252-345 22-129 (159)
81 3ieg_A DNAJ homolog subfamily 96.8 0.0046 1.6E-07 53.3 8.6 86 254-348 16-102 (359)
82 1p5q_A FKBP52, FK506-binding p 96.8 0.0038 1.3E-07 58.0 8.4 71 279-349 146-228 (336)
83 2y4t_A DNAJ homolog subfamily 96.8 0.0037 1.3E-07 56.9 8.1 65 284-348 261-326 (450)
84 3edt_B KLC 2, kinesin light ch 96.8 0.0096 3.3E-07 49.5 9.9 86 257-346 24-113 (283)
85 3fp2_A TPR repeat-containing p 96.8 0.0037 1.3E-07 58.1 8.2 68 278-349 23-91 (537)
86 2r5s_A Uncharacterized protein 96.8 0.0028 9.7E-08 52.1 6.7 68 281-352 7-75 (176)
87 1kt0_A FKBP51, 51 kDa FK506-bi 96.8 0.0034 1.2E-07 61.1 8.3 60 282-345 319-378 (457)
88 1ihg_A Cyclophilin 40; ppiase 96.7 0.0083 2.8E-07 57.3 10.7 61 289-349 232-305 (370)
89 3ro3_A PINS homolog, G-protein 96.7 0.0058 2E-07 46.2 7.7 69 277-345 46-116 (164)
90 2ifu_A Gamma-SNAP; membrane fu 96.7 0.0054 1.8E-07 55.4 8.9 82 278-359 153-236 (307)
91 1p5q_A FKBP52, FK506-binding p 96.7 0.012 4.1E-07 54.7 11.5 93 254-350 160-263 (336)
92 2qfc_A PLCR protein; TPR, HTH, 96.7 0.0089 3E-07 53.1 10.1 67 279-345 154-223 (293)
93 3nf1_A KLC 1, kinesin light ch 96.7 0.0061 2.1E-07 51.8 8.7 71 275-345 22-96 (311)
94 2if4_A ATFKBP42; FKBP-like, al 96.7 0.0028 9.7E-08 59.1 7.1 72 278-349 177-262 (338)
95 1hh8_A P67PHOX, NCF-2, neutrop 96.7 0.0078 2.7E-07 49.5 8.9 84 254-349 19-103 (213)
96 3u4t_A TPR repeat-containing p 96.7 0.0035 1.2E-07 53.0 7.0 63 282-348 5-67 (272)
97 3as5_A MAMA; tetratricopeptide 96.7 0.0083 2.9E-07 46.6 8.4 63 283-349 79-142 (186)
98 2vq2_A PILW, putative fimbrial 96.6 0.013 4.5E-07 47.3 9.7 58 283-344 116-173 (225)
99 2vq2_A PILW, putative fimbrial 96.6 0.02 6.9E-07 46.2 10.7 63 280-346 42-105 (225)
100 1qqe_A Vesicular transport pro 96.6 0.009 3.1E-07 53.5 9.5 77 280-356 158-238 (292)
101 2fo7_A Synthetic consensus TPR 96.6 0.013 4.5E-07 42.7 8.7 64 282-349 37-101 (136)
102 2ho1_A Type 4 fimbrial biogene 96.6 0.03 1E-06 46.9 11.8 86 257-349 121-207 (252)
103 3as5_A MAMA; tetratricopeptide 96.6 0.018 6E-07 44.8 9.7 86 255-349 22-108 (186)
104 2ho1_A Type 4 fimbrial biogene 96.5 0.013 4.4E-07 49.1 9.3 60 283-346 74-133 (252)
105 3nf1_A KLC 1, kinesin light ch 96.5 0.017 6E-07 49.0 10.1 68 278-345 151-222 (311)
106 4eqf_A PEX5-related protein; a 96.5 0.012 4E-07 52.5 9.2 58 283-344 68-125 (365)
107 4ga2_A E3 SUMO-protein ligase 96.5 0.016 5.6E-07 47.2 9.3 85 257-350 47-133 (150)
108 2e2e_A Formate-dependent nitri 96.4 0.017 6E-07 46.6 9.3 64 283-350 81-148 (177)
109 1xnf_A Lipoprotein NLPI; TPR, 96.4 0.022 7.7E-07 47.8 10.2 66 282-351 79-145 (275)
110 1zu2_A Mitochondrial import re 96.4 0.012 4.2E-07 52.3 8.7 101 250-359 11-133 (158)
111 2fo7_A Synthetic consensus TPR 96.4 0.015 5.2E-07 42.4 7.8 63 283-349 4-67 (136)
112 4eqf_A PEX5-related protein; a 96.4 0.016 5.4E-07 51.7 9.3 56 285-344 218-273 (365)
113 2e2e_A Formate-dependent nitri 96.4 0.015 5.1E-07 47.0 8.4 66 281-350 45-114 (177)
114 4gyw_A UDP-N-acetylglucosamine 96.4 0.0097 3.3E-07 62.9 9.2 85 256-349 58-143 (723)
115 2vsy_A XCC0866; transferase, g 96.3 0.04 1.4E-06 53.8 12.8 88 253-349 35-123 (568)
116 2l6j_A TPR repeat-containing p 96.3 0.00075 2.6E-08 49.7 0.5 85 256-345 19-105 (111)
117 3gw4_A Uncharacterized protein 96.3 0.013 4.4E-07 47.3 7.8 68 278-345 64-134 (203)
118 1fch_A Peroxisomal targeting s 96.3 0.038 1.3E-06 48.6 11.4 90 253-349 193-283 (368)
119 2q7f_A YRRB protein; TPR, prot 96.3 0.013 4.4E-07 48.3 7.9 67 282-352 161-228 (243)
120 3gw4_A Uncharacterized protein 96.3 0.012 4.2E-07 47.4 7.6 68 278-345 105-174 (203)
121 4gyw_A UDP-N-acetylglucosamine 96.3 0.011 3.9E-07 62.4 9.2 88 254-350 22-110 (723)
122 1kt0_A FKBP51, 51 kDa FK506-bi 96.2 0.021 7E-07 55.6 10.2 56 294-349 282-349 (457)
123 2y4t_A DNAJ homolog subfamily 96.2 0.031 1.1E-06 50.8 10.7 87 256-351 41-128 (450)
124 3u3w_A Transcriptional activat 96.2 0.036 1.2E-06 49.2 10.7 91 255-345 89-182 (293)
125 2r5s_A Uncharacterized protein 96.2 0.012 4.2E-07 48.3 7.2 58 284-343 112-169 (176)
126 4abn_A Tetratricopeptide repea 96.2 0.047 1.6E-06 53.1 12.4 102 253-360 191-302 (474)
127 2q7f_A YRRB protein; TPR, prot 96.2 0.024 8.1E-07 46.7 8.7 64 282-349 93-157 (243)
128 3cv0_A Peroxisome targeting si 96.1 0.016 5.4E-07 49.6 7.8 89 252-349 32-121 (327)
129 3ffl_A Anaphase-promoting comp 96.1 0.017 5.7E-07 52.7 8.2 77 277-353 60-158 (167)
130 3mkr_A Coatomer subunit epsilo 96.1 0.017 5.7E-07 52.6 8.3 58 288-349 174-232 (291)
131 3hym_B Cell division cycle pro 96.1 0.037 1.3E-06 47.4 9.9 69 281-349 194-268 (330)
132 1wao_1 Serine/threonine protei 96.0 0.017 5.7E-07 57.0 8.4 84 258-350 23-107 (477)
133 3qou_A Protein YBBN; thioredox 96.0 0.015 5.2E-07 52.4 7.5 90 252-350 162-252 (287)
134 1fch_A Peroxisomal targeting s 96.0 0.018 6.3E-07 50.6 7.8 88 253-349 76-164 (368)
135 1qqe_A Vesicular transport pro 96.0 0.02 6.9E-07 51.2 8.3 68 278-345 75-145 (292)
136 3u3w_A Transcriptional activat 96.0 0.03 1E-06 49.7 9.3 68 278-345 153-223 (293)
137 3qwp_A SET and MYND domain-con 96.0 0.029 9.8E-07 55.6 10.0 68 277-344 326-397 (429)
138 3k9i_A BH0479 protein; putativ 96.0 0.0079 2.7E-07 46.4 4.8 58 292-350 2-60 (117)
139 2c2l_A CHIP, carboxy terminus 96.0 0.018 6E-07 51.9 7.7 67 280-350 4-71 (281)
140 3hym_B Cell division cycle pro 95.9 0.019 6.7E-07 49.1 7.1 64 282-349 238-302 (330)
141 3cv0_A Peroxisome targeting si 95.9 0.039 1.3E-06 47.2 8.9 66 280-349 21-87 (327)
142 4a1s_A PINS, partner of inscut 95.8 0.083 2.8E-06 47.5 11.4 68 278-345 221-290 (411)
143 2qfc_A PLCR protein; TPR, HTH, 95.8 0.024 8E-07 50.4 7.6 64 281-344 197-263 (293)
144 3qww_A SET and MYND domain-con 95.8 0.05 1.7E-06 54.3 10.8 67 278-344 338-408 (433)
145 3ro2_A PINS homolog, G-protein 95.8 0.02 6.7E-07 48.4 6.6 68 277-344 220-289 (338)
146 1ouv_A Conserved hypothetical 95.7 0.073 2.5E-06 45.8 10.3 65 282-352 40-112 (273)
147 1w3b_A UDP-N-acetylglucosamine 95.7 0.047 1.6E-06 49.2 9.5 56 285-344 242-297 (388)
148 2gw1_A Mitochondrial precursor 95.7 0.071 2.4E-06 48.9 10.7 79 282-364 414-496 (514)
149 3fp2_A TPR repeat-containing p 95.7 0.037 1.3E-06 51.4 8.8 77 285-365 423-510 (537)
150 3ulq_A Response regulator aspa 95.7 0.05 1.7E-06 49.6 9.5 90 256-345 118-211 (383)
151 4b4t_Q 26S proteasome regulato 95.7 0.035 1.2E-06 50.6 8.4 63 283-345 7-82 (434)
152 3mkr_A Coatomer subunit epsilo 95.7 0.063 2.1E-06 48.8 10.1 60 283-351 104-164 (291)
153 1wao_1 Serine/threonine protei 95.7 0.0067 2.3E-07 59.8 3.9 68 279-350 5-73 (477)
154 2if4_A ATFKBP42; FKBP-like, al 95.6 0.024 8.4E-07 52.8 7.3 64 282-349 232-296 (338)
155 3n71_A Histone lysine methyltr 95.6 0.034 1.2E-06 56.4 8.7 64 279-344 308-377 (490)
156 2vsy_A XCC0866; transferase, g 95.5 0.033 1.1E-06 54.4 8.0 84 258-350 6-90 (568)
157 3sf4_A G-protein-signaling mod 95.5 0.03 1E-06 49.5 7.1 67 279-345 266-334 (406)
158 2ifu_A Gamma-SNAP; membrane fu 95.5 0.034 1.1E-06 50.2 7.5 65 280-345 116-182 (307)
159 3ulq_A Response regulator aspa 95.5 0.033 1.1E-06 50.8 7.5 69 278-346 182-252 (383)
160 3n71_A Histone lysine methyltr 95.5 0.23 7.8E-06 50.3 14.3 116 278-399 349-476 (490)
161 3q15_A PSP28, response regulat 95.5 0.034 1.1E-06 50.9 7.5 68 278-345 180-249 (378)
162 1w3b_A UDP-N-acetylglucosamine 95.4 0.045 1.6E-06 49.3 8.1 85 257-350 253-338 (388)
163 3q15_A PSP28, response regulat 95.3 0.09 3.1E-06 48.1 10.0 89 257-345 117-209 (378)
164 3qww_A SET and MYND domain-con 95.2 0.053 1.8E-06 54.1 8.5 63 282-344 300-366 (433)
165 1ouv_A Conserved hypothetical 95.0 0.18 6.3E-06 43.3 10.3 64 282-351 76-147 (273)
166 2pzi_A Probable serine/threoni 95.0 0.063 2.1E-06 55.0 8.6 64 282-349 435-499 (681)
167 2xpi_A Anaphase-promoting comp 94.9 0.11 3.7E-06 49.3 9.4 64 283-350 519-583 (597)
168 4g1t_A Interferon-induced prot 94.9 0.023 7.9E-07 52.3 4.7 61 285-345 56-121 (472)
169 1hz4_A MALT regulatory protein 94.7 0.13 4.5E-06 46.2 8.9 67 279-345 52-120 (373)
170 2h6f_A Protein farnesyltransfe 94.6 0.054 1.8E-06 52.4 6.8 85 257-350 148-233 (382)
171 1hz4_A MALT regulatory protein 94.5 0.11 3.6E-06 46.8 7.9 68 278-345 91-162 (373)
172 3rjv_A Putative SEL1 repeat pr 94.5 0.16 5.4E-06 43.5 8.6 65 280-351 18-86 (212)
173 2pzi_A Probable serine/threoni 94.4 0.066 2.3E-06 54.9 7.2 83 252-344 444-526 (681)
174 4f3v_A ESX-1 secretion system 93.8 0.069 2.4E-06 51.2 5.5 65 282-348 137-201 (282)
175 2ond_A Cleavage stimulation fa 93.7 0.35 1.2E-05 43.3 9.5 82 258-346 81-162 (308)
176 2h6f_A Protein farnesyltransfe 93.6 0.2 6.9E-06 48.4 8.4 65 282-350 133-199 (382)
177 2ond_A Cleavage stimulation fa 93.5 1.1 3.8E-05 40.0 12.5 50 293-346 182-231 (308)
178 2xpi_A Anaphase-promoting comp 93.2 0.26 8.8E-06 46.8 8.2 59 286-344 481-542 (597)
179 1klx_A Cysteine rich protein B 93.0 0.49 1.7E-05 38.4 8.7 64 281-350 58-129 (138)
180 4b4t_Q 26S proteasome regulato 93.0 0.23 7.7E-06 45.2 7.3 98 249-346 12-163 (434)
181 2ff4_A Probable regulatory pro 92.5 0.67 2.3E-05 45.0 10.3 129 227-360 92-255 (388)
182 3rjv_A Putative SEL1 repeat pr 92.2 2 6.7E-05 36.7 11.8 70 280-354 125-204 (212)
183 1na3_A Designed protein CTPR2; 92.2 0.45 1.5E-05 33.5 6.5 68 256-332 24-91 (91)
184 3bee_A Putative YFRE protein; 92.2 0.7 2.4E-05 36.4 8.3 64 282-349 8-75 (93)
185 2kat_A Uncharacterized protein 92.2 0.27 9.1E-06 37.2 5.6 50 297-350 2-52 (115)
186 2kc7_A BFR218_protein; tetratr 91.8 0.17 5.7E-06 37.0 4.0 77 253-345 12-88 (99)
187 4g1t_A Interferon-induced prot 91.6 0.54 1.9E-05 43.2 8.1 71 288-362 221-292 (472)
188 3bee_A Putative YFRE protein; 90.4 0.88 3E-05 35.8 7.2 33 283-316 46-78 (93)
189 1klx_A Cysteine rich protein B 89.7 3.7 0.00013 33.1 10.6 59 286-350 31-93 (138)
190 2ooe_A Cleavage stimulation fa 89.6 2.2 7.4E-05 41.1 10.6 58 291-352 23-81 (530)
191 2ooe_A Cleavage stimulation fa 88.7 0.92 3.2E-05 43.7 7.3 51 293-346 292-349 (530)
192 2xm6_A Protein corresponding t 87.2 3.6 0.00012 39.1 10.3 48 293-346 200-251 (490)
193 2xm6_A Protein corresponding t 87.0 3.7 0.00013 39.1 10.3 63 283-351 78-148 (490)
194 3mv2_B Coatomer subunit epsilo 85.6 3.4 0.00011 40.2 9.3 65 282-348 102-167 (310)
195 1b89_A Protein (clathrin heavy 84.7 1.3 4.5E-05 45.4 6.3 64 282-345 150-234 (449)
196 1pc2_A Mitochondria fission pr 84.0 5.5 0.00019 35.3 9.2 79 281-364 33-115 (152)
197 2ff4_A Probable regulatory pro 83.8 6.5 0.00022 38.1 10.4 74 278-352 113-206 (388)
198 3ly7_A Transcriptional activat 83.8 2.5 8.6E-05 42.4 7.7 68 289-361 286-354 (372)
199 3ma5_A Tetratricopeptide repea 83.2 1.9 6.4E-05 32.5 5.1 57 256-317 22-78 (100)
200 1b89_A Protein (clathrin heavy 81.6 1.4 4.9E-05 45.1 5.1 52 282-345 124-175 (449)
201 2ijq_A Hypothetical protein; s 80.7 4.3 0.00015 36.6 7.3 67 278-344 30-101 (161)
202 2cwy_A Hypothetical protein TT 79.4 2.4 8.3E-05 34.7 4.8 60 283-344 4-65 (94)
203 1xi4_A Clathrin heavy chain; a 77.3 4.7 0.00016 47.5 8.0 81 254-344 1118-1221(1630)
204 3e4b_A ALGK; tetratricopeptide 77.3 4.5 0.00015 39.0 6.8 56 283-345 251-314 (452)
205 2vkj_A TM1634; membrane protei 76.2 5.9 0.0002 33.8 6.3 49 261-309 31-82 (106)
206 3dss_A Geranylgeranyl transfer 75.4 8.1 0.00028 37.5 8.0 85 245-349 10-106 (331)
207 3ffl_A Anaphase-promoting comp 75.1 7.1 0.00024 35.5 7.1 61 283-343 23-88 (167)
208 1qsa_A Protein (soluble lytic 74.8 5.1 0.00017 42.2 6.9 74 284-372 290-363 (618)
209 3e4b_A ALGK; tetratricopeptide 74.5 18 0.00061 34.8 10.2 61 284-351 217-284 (452)
210 2p58_C Putative type III secre 71.4 9.6 0.00033 33.2 6.6 73 278-360 39-111 (116)
211 2uwj_G Type III export protein 70.1 9.4 0.00032 33.2 6.2 73 278-360 38-110 (115)
212 1zu2_A Mitochondrial import re 69.8 2.8 9.4E-05 37.2 3.0 53 294-350 16-79 (158)
213 3mv2_B Coatomer subunit epsilo 68.7 10 0.00035 36.7 7.0 65 279-348 175-242 (310)
214 1xi4_A Clathrin heavy chain; a 67.4 7.6 0.00026 45.8 6.7 51 282-344 1197-1247(1630)
215 4e6h_A MRNA 3'-END-processing 62.7 13 0.00046 39.2 7.0 56 287-346 350-406 (679)
216 2qx5_A Nucleoporin NIC96; mRNA 60.6 27 0.00093 37.4 8.9 55 258-313 512-570 (661)
217 3iqc_A FLIS, flagellar protein 59.9 21 0.00073 30.7 6.6 58 276-333 32-94 (131)
218 3dra_A Protein farnesyltransfe 59.5 28 0.00094 33.0 8.0 72 278-353 30-105 (306)
219 1orj_A Flagellar protein FLIS; 58.4 20 0.0007 30.9 6.3 56 277-332 26-90 (130)
220 3mkq_A Coatomer beta'-subunit; 55.7 9.5 0.00032 37.8 4.2 61 285-346 686-764 (814)
221 3ax2_A Mitochondrial import re 53.6 14 0.00048 29.5 4.1 40 278-317 15-54 (73)
222 3dra_A Protein farnesyltransfe 52.4 1.5E+02 0.0051 28.0 11.7 59 286-348 73-141 (306)
223 2v5f_A Prolyl 4-hydroxylase su 50.4 16 0.00053 28.2 3.9 34 283-316 49-82 (104)
224 1nzn_A CGI-135 protein, fissio 49.7 58 0.002 28.1 7.7 78 282-364 37-118 (126)
225 1dce_A Protein (RAB geranylger 49.6 8 0.00027 39.4 2.7 61 285-349 33-105 (567)
226 1om2_A Protein (mitochondrial 47.5 16 0.00056 30.5 3.7 40 278-317 18-57 (95)
227 1dce_A Protein (RAB geranylger 47.2 1.1E+02 0.0036 31.2 10.4 57 287-349 70-141 (567)
228 1vh6_A Flagellar protein FLIS; 47.1 26 0.00089 30.7 5.2 69 260-331 8-87 (145)
229 1wjt_A Transcription elongatio 44.9 45 0.0015 27.8 6.0 27 339-366 58-85 (103)
230 3o48_A Mitochondria fission 1 44.9 1.6E+02 0.0055 25.8 10.3 92 261-364 27-122 (134)
231 2hsb_A Hypothetical UPF0332 pr 43.9 20 0.00069 28.9 3.7 35 276-310 8-42 (126)
232 3l9t_A Putative uncharacterize 43.9 48 0.0017 31.7 6.8 71 286-360 25-95 (240)
233 3lpz_A GET4 (YOR164C homolog); 42.4 42 0.0014 33.3 6.4 73 253-332 11-89 (336)
234 4a5x_A MITD1, MIT domain-conta 39.0 34 0.0012 27.4 4.3 31 280-310 16-46 (86)
235 3shg_B VBHA; ampylation, adeny 39.0 44 0.0015 26.3 4.7 36 246-282 3-38 (61)
236 2cfu_A SDSA1; SDS-hydrolase, l 37.4 22 0.00075 37.4 3.7 52 281-336 450-501 (658)
237 2v6y_A AAA family ATPase, P60 37.2 26 0.00091 27.7 3.3 21 323-343 16-36 (83)
238 2w2u_A Hypothetical P60 katani 36.7 27 0.00093 27.9 3.3 21 323-343 24-44 (83)
239 2wpv_A GET4, UPF0363 protein Y 36.6 59 0.002 31.6 6.3 76 252-334 11-89 (312)
240 3txn_A 26S proteasome regulato 36.3 91 0.0031 31.2 7.8 61 285-345 104-166 (394)
241 2v6x_A Vacuolar protein sortin 36.1 54 0.0018 25.6 5.0 33 278-310 11-43 (85)
242 4h7y_A Dual specificity protei 34.8 27 0.00091 31.9 3.3 80 270-352 6-93 (161)
243 1y8m_A FIS1; mitochondria, unk 34.7 1.4E+02 0.0048 26.5 7.9 76 283-364 42-121 (144)
244 2w2u_A Hypothetical P60 katani 34.4 45 0.0015 26.6 4.3 34 277-310 16-49 (83)
245 3arc_Y Protein YCF12; PSII, me 33.8 48 0.0017 22.7 3.7 22 411-433 7-28 (29)
246 2v6y_A AAA family ATPase, P60 33.4 51 0.0017 26.0 4.4 33 278-310 9-41 (83)
247 4b4t_R RPN7, 26S proteasome re 32.7 76 0.0026 31.1 6.5 90 256-353 112-207 (429)
248 3zwl_E Eukaryotic translation 32.4 42 0.0014 25.2 3.5 28 248-275 22-49 (50)
249 3u64_A Protein TP_0956; tetrat 31.6 2.5E+02 0.0086 27.6 9.8 71 287-360 206-292 (301)
250 3q7a_A Farnesyltransferase alp 31.0 1.6E+02 0.0055 28.8 8.5 57 287-349 95-157 (349)
251 2cpt_A SKD1 protein, vacuolar 30.9 43 0.0015 28.3 3.8 32 279-310 17-48 (117)
252 2rpa_A Katanin P60 ATPase-cont 30.7 44 0.0015 26.9 3.7 33 279-311 11-43 (78)
253 1wfd_A Hypothetical protein 15 30.3 79 0.0027 25.4 5.1 33 278-310 13-45 (93)
254 1wy6_A Hypothetical protein ST 30.0 75 0.0026 29.3 5.4 58 290-351 101-158 (172)
255 3mkq_A Coatomer beta'-subunit; 28.1 1.3E+02 0.0044 29.8 7.2 46 287-344 730-775 (814)
256 3efz_A 14-3-3 protein; 14-3-3, 28.1 2.3E+02 0.0079 27.5 8.8 85 256-344 101-223 (268)
257 1wol_A ST0689, 122AA long cons 27.8 64 0.0022 26.1 4.3 34 277-310 8-41 (122)
258 1o3u_A Conserved hypothetical 27.6 62 0.0021 27.0 4.3 33 278-310 14-46 (135)
259 2bn5_A PSI; nuclear protein, s 27.6 67 0.0023 22.6 3.6 27 322-348 6-32 (33)
260 1rh1_A Colicin B; FEPA, cytoto 27.5 3.4E+02 0.012 28.7 10.4 58 331-388 363-424 (511)
261 4ffb_C Protein STU2; tubulin f 27.4 3.3E+02 0.011 24.2 9.5 48 315-362 154-209 (278)
262 3rpd_A Methionine synthase (B1 27.1 97 0.0033 30.4 6.1 56 215-275 19-74 (357)
263 4b4t_P 26S proteasome regulato 26.8 3.5E+02 0.012 26.7 10.1 63 283-345 140-204 (445)
264 1te4_A Conserved protein MTH18 26.5 2.3E+02 0.008 22.2 7.3 57 297-360 72-128 (131)
265 3few_X Colicin S4; cell lysis, 26.3 58 0.002 34.0 4.5 105 261-370 264-385 (505)
266 4fm3_A Uncharacterized hypothe 25.6 1.9E+02 0.0066 24.3 6.8 51 256-307 11-61 (98)
267 3mkq_B Coatomer subunit alpha; 25.1 44 0.0015 30.3 3.0 76 285-361 39-139 (177)
268 1ufb_A TT1696 protein; structu 25.0 65 0.0022 26.0 3.8 34 277-310 8-41 (127)
269 2crb_A Nuclear receptor bindin 25.0 49 0.0017 28.1 3.1 27 285-311 20-46 (97)
270 4a5x_A MITD1, MIT domain-conta 24.1 76 0.0026 25.3 4.0 35 321-355 19-61 (86)
271 3geb_A EYES absent homolog 2; 24.1 55 0.0019 32.2 3.6 123 249-409 115-248 (274)
272 4g26_A Pentatricopeptide repea 23.0 2.1E+02 0.0071 28.6 7.8 60 291-353 151-213 (501)
273 2yhe_A SEC-alkyl sulfatase; hy 28.3 18 0.00062 38.5 0.0 54 280-337 461-514 (668)
274 3u64_A Protein TP_0956; tetrat 22.6 97 0.0033 30.5 5.1 54 295-350 178-237 (301)
275 3dss_A Geranylgeranyl transfer 22.2 5.3E+02 0.018 24.8 10.5 47 296-348 90-141 (331)
276 3mkr_B Coatomer subunit alpha; 22.0 1.1E+02 0.0038 30.3 5.4 42 272-313 94-135 (320)
277 1ya0_A SMG-7 transcript varian 21.7 3.7E+02 0.013 27.5 9.4 72 283-358 155-228 (497)
278 2v6x_A Vacuolar protein sortin 20.7 1E+02 0.0034 24.0 4.0 31 324-354 19-57 (85)
279 1xju_A Lysozyme; secreted inac 20.7 4.2E+02 0.014 23.1 8.4 61 231-291 29-93 (163)
280 1wfd_A Hypothetical protein 15 20.4 99 0.0034 24.9 4.0 32 323-354 20-59 (93)
281 2anv_A Lysozyme; direct method 20.2 3.5E+02 0.012 22.9 7.6 58 234-291 41-99 (146)
No 1
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.44 E-value=1.6e-06 Score=73.53 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (436)
..+..+.+..|++-. .++|..-. --+..|..++..|+|.+|+..|++|+.+-|... .+.+.++.||..+|+
T Consensus 49 ~g~~~eA~~~~~~al--~~~P~~~~---~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~----~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLC--IYDFYNVD---YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY----TPVFHTGQCQLRLKA 119 (151)
T ss_dssp TTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC----HHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCC
Confidence 345566677776554 45555433 356679999999999999999999999887654 578899999999999
Q ss_pred hHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 013807 334 PKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 334 ~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE 364 (436)
.++|+..|++.. ..|+..++++|+.+|-.++
T Consensus 120 ~~eA~~~~~~al~l~~~~~~~~~A~~ll~~l~ 151 (151)
T 3gyz_A 120 PLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151 (151)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 999999999985 7999999999999997764
No 2
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.37 E-value=2.2e-06 Score=68.77 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc---hhHHHHHHHHHHH
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---HGLAALQWSICQD 329 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L---GGeaqLwLAiAyd 329 (436)
+..+..+.+..|.+-. +++|..- ..-+..|..++..|+|.+|+..|++|+++-+..... -|.+-..++.||.
T Consensus 20 ~~~~~~~A~~~y~~Al--~~~p~~~---~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 20 KQKDFEKAHVHYDKAI--ELDPSNI---TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH--HhCCCCH---HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3446678888888765 6677653 346678999999999999999999999987655433 2567788999999
Q ss_pred hcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 013807 330 SLHRPKEARIMYEKL-QSHPNALVSKRARQF 359 (436)
Q Consensus 330 A~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL 359 (436)
+.|+.++|+..|++- ..||++++.++-+++
T Consensus 95 ~~~~~~~A~~~~~kal~~~~~~~~~~~l~~l 125 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence 999999999999985 579999998775543
No 3
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=1.2e-05 Score=61.24 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (436)
..+.+..|++-. ..+|......+..+..|..++..|+|.+|+.+|+++++.-+. +..-..+.++++.||...|+.++
T Consensus 18 ~~~A~~~~~~~~--~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~ 94 (129)
T 2xev_A 18 YDDASQLFLSFL--ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTE 94 (129)
T ss_dssp HHHHHHHHHHHH--HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHH--HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHH
Confidence 334444444332 223443333456788899999999999999999999987654 33457889999999999999999
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 013807 337 ARIMYEKLQ-SHPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 337 AiaLYkkL~-sHP~~eVrKQAkrLlyiLE 364 (436)
|+..|+++. .+|+......|+..+-.++
T Consensus 95 A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 95 AQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 999999985 7899888888777665554
No 4
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.99 E-value=4e-05 Score=58.79 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHHHHHHH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNALVSKRA 356 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~eVrKQA 356 (436)
...+..|..++..|+|.+|+.+|++|++.-+... .+.+.++.||...|+.++|+..|++.. .+++....++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYV----GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 3467889999999999999999999999876543 478899999999999999999999875 45666655555
Q ss_pred HHHHH
Q 013807 357 RQFMF 361 (436)
Q Consensus 357 krLly 361 (436)
.+++-
T Consensus 84 ~~~l~ 88 (100)
T 3ma5_A 84 QDAKL 88 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 5
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.97 E-value=3e-05 Score=67.06 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=69.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc----------CChHHHHHHHHHHh-cCCCHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL----------HRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~----------GR~~EAiaLYkkL~-sHP~~e 351 (436)
.+..|..++..|+|.+|+..|+++++.-+ .+....++.++++.||..+ |+.++|+..|+++. .+|+-.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYP-DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 38889999999999999999999998764 5667789999999999988 99999999999996 799888
Q ss_pred HHHHHHHHHHHHH
Q 013807 352 VSKRARQFMFSFQ 364 (436)
Q Consensus 352 VrKQAkrLlyiLE 364 (436)
.-++|..++--+.
T Consensus 230 ~~~~a~~~l~~~~ 242 (261)
T 3qky_A 230 LLRTAEELYTRAR 242 (261)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7788877665443
No 6
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=8.3e-05 Score=54.89 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
++..+..|..++..|+|.+|+.+|++|+..-+.. ..+...++.||...|+.++|+..|++.. .+|+-
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4567889999999999999999999999987654 5677889999999999999999999975 56764
No 7
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=7e-05 Score=58.01 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=68.5
Q ss_pred HHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHH
Q 013807 259 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR 338 (436)
Q Consensus 259 e~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi 338 (436)
+.+..|++-.-+..+ ........+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.+++||...|+.++|+
T Consensus 8 ~A~~~~~~al~~~~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQ--GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp CCHHHHHHHHSSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHH
Confidence 344555555543322 22345567888999999999999999999999987665 678899999999999999999
Q ss_pred HHHHHHh-cCCC-HHHHH
Q 013807 339 IMYEKLQ-SHPN-ALVSK 354 (436)
Q Consensus 339 aLYkkL~-sHP~-~eVrK 354 (436)
..|++.. .+|+ +.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 9999975 4554 34433
No 8
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.87 E-value=9.7e-05 Score=58.17 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc---chhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS 353 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr 353 (436)
+.-|..|+.+|+.|+|..|+.+|+.|++....... --..+-.+|+.||...|+.++|+.+|+++. -.|+-..-
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 45689999999999999999999999998865432 335788899999999999999999999985 67765433
No 9
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.81 E-value=0.0002 Score=53.06 Aligned_cols=83 Identities=16% Similarity=0.053 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA 356 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA 356 (436)
...+..|..++..|+|.+|+.+|+++++..+...... ..+.+.++.+|...|+.++|+..|++.. .+|+..+....
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 118 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3457789999999999999999999999876543222 6778889999999999999999999985 67887777666
Q ss_pred HHHHHHH
Q 013807 357 RQFMFSF 363 (436)
Q Consensus 357 krLlyiL 363 (436)
.++.-.+
T Consensus 119 ~~~~~~~ 125 (131)
T 1elr_A 119 QQAEKIL 125 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554433
No 10
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.81 E-value=9.4e-05 Score=59.46 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=57.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 271 ~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.|||+. ++.....|..+|..|+|.+|+.+|++|++.-+.. ..+-..++.||..+|+.++|+..|++.. .+|+
T Consensus 7 ~inP~~---a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 7 YINPEL---AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp CCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 366653 4456678999999999999999999999887655 3566778999999999999999999874 4554
No 11
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.81 E-value=9.7e-05 Score=59.07 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
.+..+.+..|++-+ ..+|... .-.+..|..++..|+|.+|+..|++|+.+-+... .+.+.++.||...|+.
T Consensus 32 g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 32 GKWDDAQKIFQALC--MLDHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALMDINEP----RFPFHAAECHLQLGDL 102 (142)
T ss_dssp TCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHH--HhCCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCH
Confidence 34455555555443 3344432 2356678999999999999999999998876554 4668899999999999
Q ss_pred HHHHHHHHHHh-cCC----CHHHHHHHHHHHHHH
Q 013807 335 KEARIMYEKLQ-SHP----NALVSKRARQFMFSF 363 (436)
Q Consensus 335 ~EAiaLYkkL~-sHP----~~eVrKQAkrLlyiL 363 (436)
++|+..|++.. .+| ...+++++..++-.+
T Consensus 103 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 103 DGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 99999999874 344 455666666665544
No 12
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.81 E-value=3.9e-05 Score=62.11 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC--------------ccchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--------------SELHGLAALQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~--------------S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 343 (436)
..++.....|..+|..|+|.+|+.+|++|+..++.. ......+.+.++.||-.+|+.++|+..|++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 455556666777777777777777777766663221 122334555566666666666666666666
Q ss_pred Hh
Q 013807 344 LQ 345 (436)
Q Consensus 344 L~ 345 (436)
..
T Consensus 89 al 90 (162)
T 3rkv_A 89 VL 90 (162)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 13
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.80 E-value=0.00013 Score=59.93 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (436)
..+..+.+..|++-+ .++|.... ..+..|..++..|+|.+|+..|++|+.+-+... .+.+.++.||...|+
T Consensus 34 ~g~~~~A~~~~~~al--~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 34 SGXYEDAHXVFQALC--VLDHYDSR---FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGE 104 (148)
T ss_dssp TTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTC
T ss_pred cCChHHHHHHHHHHH--HcCcccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCC
Confidence 344556666666544 34454332 246779999999999999999999998876543 567889999999999
Q ss_pred hHHHHHHHHHHh-cCCC----HHHHHHHHHHHHHHH
Q 013807 334 PKEARIMYEKLQ-SHPN----ALVSKRARQFMFSFQ 364 (436)
Q Consensus 334 ~~EAiaLYkkL~-sHP~----~eVrKQAkrLlyiLE 364 (436)
.++|+..|++.. ..|. ..++.++..++-.++
T Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 105 LAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence 999999999875 4554 566777777766554
No 14
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.80 E-value=6.6e-05 Score=64.50 Aligned_cols=71 Identities=10% Similarity=0.072 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (436)
++..|..|..+|..|+|.+|+..|+++++.-+ .+...-++.++++.||...|+.++|+..|+++. .||.-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 35688999999999999999999999998654 456677899999999999999999999999985 688643
No 15
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.0001 Score=56.88 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
++..+..|..++..|+|.+|+.+|++|+..-+.. ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4556667777777777777777777777766543 3566667777777777777777777764 3554
No 16
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=0.00011 Score=55.96 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
..|..|..++..|+|.+|+.+|++++..-+ .+.....+.++++.||-..|+.++|+..|+++. .+|+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 367889999999999999999999998765 445556899999999999999999999999985 57764
No 17
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.00056 Score=52.36 Aligned_cols=90 Identities=17% Similarity=0.105 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (436)
..+..+.+..|++-.. ++|.........+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||...|+
T Consensus 41 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~ 114 (148)
T 2dba_A 41 CGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGR 114 (148)
T ss_dssp TTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTC
T ss_pred hCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCC
Confidence 3455667777777664 445544456667888999999999999999999999875543 5777889999999999
Q ss_pred hHHHHHHHHHHh-cCCC
Q 013807 334 PKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 334 ~~EAiaLYkkL~-sHP~ 349 (436)
.++|+..|++.. .+|+
T Consensus 115 ~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 115 LDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 999999999985 4664
No 18
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.73 E-value=0.00015 Score=57.99 Aligned_cols=64 Identities=11% Similarity=-0.038 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
+.+......|..+|..|+|.+|+.+|++|+++-|.. ..+-..++.||-..|+.++|+..|++..
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445567999999999999999999999987654 4567789999999999999999999874
No 19
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.70 E-value=0.0003 Score=57.63 Aligned_cols=85 Identities=11% Similarity=0.045 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (436)
.+.+.++.|.+.. ..+ .+.....|..|..++..|+|.+|+++|++|++.-|.. .++...++.||...|+.+
T Consensus 12 ~~e~ai~~~~~a~--~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 12 DVERYIASVQGST--PSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----PKAHRFLGLLYELEENTD 82 (150)
T ss_dssp HHHHHHHHHHHHS--CSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHhc--ccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCchH
Confidence 3445666776655 222 3445557889999999999999999999999987654 567888999999999999
Q ss_pred HHHHHHHHHh-cCCC
Q 013807 336 EARIMYEKLQ-SHPN 349 (436)
Q Consensus 336 EAiaLYkkL~-sHP~ 349 (436)
+|+..|++.. .+|+
T Consensus 83 ~A~~~~~~al~~~p~ 97 (150)
T 4ga2_A 83 KAVECYRRSVELNPT 97 (150)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 9999999975 5775
No 20
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.66 E-value=0.00026 Score=51.25 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc-CChHHHHHHHHHHh-cCCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~-sHP~ 349 (436)
..+..|..++..|+|.+|+.+|++++...+. .....+...++.||... |+.++|+..++++. .||+
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 3577889999999999999999999887654 23457788899999999 99999999999986 5664
No 21
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.63 E-value=0.00023 Score=57.61 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
.+..+.+..|++-+ .++|.. ..-.+..|..++..|+|.+|+.+|++|+.+-+.. ..+.+.++.||...|+.
T Consensus 25 g~~~~A~~~~~~al--~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 25 KEYSKAIDLYTQAL--SIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADY 95 (164)
T ss_dssp TCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHH--HhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCH
Confidence 34455555555444 333332 2234555666666666666666666666665432 45556666666667777
Q ss_pred HHHHHHHHHHh
Q 013807 335 KEARIMYEKLQ 345 (436)
Q Consensus 335 ~EAiaLYkkL~ 345 (436)
++|+..|++..
T Consensus 96 ~~A~~~~~~al 106 (164)
T 3sz7_A 96 KGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766666653
No 22
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.63 E-value=0.00013 Score=54.02 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhH-HHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL-AALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGe-aqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
.|..|..++..|+|.+|+..|+++++.-+.. .. +.++++.||...|+.++|+..|++.. .+|+-
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 4788999999999999999999999986544 34 78889999999999999999999985 56653
No 23
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.61 E-value=0.001 Score=47.47 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
....+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.||...|+.++|+..|++.. .+|+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3456778999999999999999999999886543 4677889999999999999999999985 56653
No 24
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00082 Score=51.25 Aligned_cols=76 Identities=11% Similarity=0.007 Sum_probs=60.6
Q ss_pred HHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHH
Q 013807 261 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM 340 (436)
Q Consensus 261 LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL 340 (436)
+..|++-+ .++|.. ....+..|..++..|+|.+|+.+|++|+..-+.. ..+.+.|+.||...|+.++|+..
T Consensus 5 ~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 5 TERLEAML--AQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp HHHHHHHH--TTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHH--HhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444443 344443 2357788999999999999999999999886543 56788999999999999999999
Q ss_pred HHHHh
Q 013807 341 YEKLQ 345 (436)
Q Consensus 341 YkkL~ 345 (436)
|++..
T Consensus 76 ~~~al 80 (115)
T 2kat_A 76 WESGL 80 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
No 25
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.60 E-value=0.00028 Score=60.96 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
++..|..|..+|..|+|.+|+..|+++++.-+ .+....++.++++.||-..|+.++|+..|+++. .+|.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 45689999999999999999999999998765 445668999999999999999999999999996 5774
No 26
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00038 Score=50.68 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
++..+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 4455666777777777777777777776665432 4455666777777777777777777664 3443
No 27
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.50 E-value=0.00031 Score=59.48 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
...+..+..|..++..|+|.+|+.+|++|+++-|.+ ..+-+.|+.||...||.++|+..|++.. -.|+
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 345568999999999999999999999999987654 4466779999999999999999999985 4664
No 28
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.49 E-value=0.001 Score=57.07 Aligned_cols=65 Identities=8% Similarity=0.006 Sum_probs=57.0
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
+..|..++.+|+|.+|+..|+++++.-|. +....++...++.||..+|+.++|+..+++|. .+|.
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 67899999999999999999999988765 44556899999999999999999999999996 4443
No 29
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.48 E-value=0.00044 Score=51.75 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.....+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||...|+.++|+.+|++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445556666666666666666666666554322 4555566666666666666666666653
No 30
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.48 E-value=0.00059 Score=54.47 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=60.4
Q ss_pred CcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807 270 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (436)
Q Consensus 270 l~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (436)
+.++|.. .+..+..|..++..|+|.+|+.+|++++..-+.+ ..+.+.++.||...|+.++|+..|++.. ..|
T Consensus 11 l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 11 RGLSEDT---LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp TTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HcCCHHH---HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4555543 4557899999999999999999999999887654 4567789999999999999999999985 455
Q ss_pred C
Q 013807 349 N 349 (436)
Q Consensus 349 ~ 349 (436)
+
T Consensus 84 ~ 84 (142)
T 2xcb_A 84 N 84 (142)
T ss_dssp T
T ss_pred C
Confidence 4
No 31
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.48 E-value=0.00058 Score=50.60 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.++..+..|..++..|+|.+|+.+|+++++..+.. ..+.+.++.||-..|+.++|+..|++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45667889999999999999999999999987543 4678889999999999999999999985
No 32
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.47 E-value=0.00057 Score=52.40 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
++..+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 3456777888888888888888888888776543 4567778888888888888888888775 4555
No 33
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=0.001 Score=50.91 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.++..+..|..++..|+|.+|+++|+++++..+.. ..-..+.++++.||-..|+.++|+..|++.. .+|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 35567889999999999999999999999876532 2236788889999999999999999999975 5664
No 34
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.46 E-value=0.00076 Score=52.57 Aligned_cols=57 Identities=11% Similarity=-0.083 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||...|+.++|+..|++.
T Consensus 51 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 51 GNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444555555555555555554443221 234444455555555555555555444
No 35
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.45 E-value=0.00056 Score=56.17 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=59.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 271 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 271 ~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.++|. .....+..|..++..|+|.+|+.+|++++..-+.+ -.+...++.||...|+.++|+..|++.. ..|+
T Consensus 15 ~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 15 EISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp TCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 44554 34557889999999999999999999999887665 3556789999999999999999999985 4554
No 36
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00097 Score=51.30 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
+..+..+.+..|.+-. .++|.. ..-.+..|..++..|+|.+|+..|++|++.-+.. ..+.+.++.||...|
T Consensus 16 ~~~~~~~A~~~~~~al--~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMI--KRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVK 86 (126)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHH--HhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHh
Confidence 3445566677777654 444543 2446778999999999999999999999987654 567889999999999
Q ss_pred ChHHHHHHHHHHh-cC
Q 013807 333 RPKEARIMYEKLQ-SH 347 (436)
Q Consensus 333 R~~EAiaLYkkL~-sH 347 (436)
+.++|+..|++.. .+
T Consensus 87 ~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 87 EYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999885 45
No 37
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.43 E-value=0.0011 Score=53.07 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
+..+..+.+..|.+-. .++|..- ..-+..|..++..|+|.+|+..|++|+++-+.. ..+-+.++.||...|
T Consensus 25 ~~g~~~~A~~~~~~al--~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 25 KKGDYPTAMRHYNEAV--KRDPENA---ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----IKGYIRKAACLVAMR 95 (126)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHH--HhCCCCH---HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHCC
Confidence 3456678888888765 5666543 346778999999999999999999999886554 567889999999999
Q ss_pred ChHHHHHHHHHHh-cCCCH
Q 013807 333 RPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 333 R~~EAiaLYkkL~-sHP~~ 350 (436)
+.++|+..|++.. -+|+-
T Consensus 96 ~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 96 EWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 9999999999985 57753
No 38
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.43 E-value=0.00024 Score=56.52 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (436)
..+..+.+..|++-+ .++|.. .+..+..|..++..|++.+|+..|++|+++-|.. ..+.+.|+.||...|+
T Consensus 30 ~g~~~~A~~~~~~al--~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 30 LANLAEAALAFEAVC--QKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHN 100 (121)
T ss_dssp TTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH--HHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence 334555555555444 334443 2335677888888888888888888888776654 3466778888888888
Q ss_pred hHHHHHHHHHHh-cCCC
Q 013807 334 PKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 334 ~~EAiaLYkkL~-sHP~ 349 (436)
.++|+..|+++. .+|.
T Consensus 101 ~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCcC
Confidence 888888888764 4553
No 39
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.39 E-value=0.0031 Score=47.12 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
.+..+.+..|.+-. .++|.. ....+..|..++..|+|.+|+.+|++++..-+. ...+.+.++.||...|+.
T Consensus 30 ~~~~~A~~~~~~al--~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 30 GDYPQAMKHYTEAI--KRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----FIKGYTRKAAALEAMKDY 100 (133)
T ss_dssp TCSHHHHHHHHHHH--TTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHH--HcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHHhhH
Confidence 34455566666554 334443 345678899999999999999999999987654 456788899999999999
Q ss_pred HHHHHHHHHHh-cCCCH
Q 013807 335 KEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 335 ~EAiaLYkkL~-sHP~~ 350 (436)
++|+..|++.. .+|+.
T Consensus 101 ~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 99999999985 56653
No 40
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.39 E-value=0.0014 Score=48.24 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
......+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||-..|+.++|+..|++.. .+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 445566777888888888888888888887765433 4566777888888888888888888774 4554
No 41
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.35 E-value=0.0014 Score=47.38 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.+..|..++..|+|.+|+.+|+++++.-+.. ..+.+.++.+|...|+.++|+..|++.. .+|.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3567899999999999999999999986543 4677889999999999999999999985 5665
No 42
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.35 E-value=0.00077 Score=56.19 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc-h-----------hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL-H-----------GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L-G-----------GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..++..+..|..++..|+|.+|+.+|++|+...+..... . ..+..+++.||-..|+.++|+..|++..
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456667788999999999999999999999887654411 1 2677889999999999999999999985
Q ss_pred -cCCC
Q 013807 346 -SHPN 349 (436)
Q Consensus 346 -sHP~ 349 (436)
.+|.
T Consensus 116 ~~~p~ 120 (198)
T 2fbn_A 116 KIDKN 120 (198)
T ss_dssp HHSTT
T ss_pred HhCcc
Confidence 4664
No 43
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.34 E-value=0.00053 Score=58.53 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHH----------------HHHHHHhcCChHHHHHHHHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ----------------WSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw----------------LAiAydA~GR~~EAiaLYkk 343 (436)
++..+..|..++..|+|.+|+.+|++++..-|.+ .++.+| ++.||...|+.++|+..|++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4568899999999999999999999999887654 346677 99999999999999999999
Q ss_pred Hh-cCCCH
Q 013807 344 LQ-SHPNA 350 (436)
Q Consensus 344 L~-sHP~~ 350 (436)
.. .+|+-
T Consensus 80 al~~~p~~ 87 (208)
T 3urz_A 80 LLQKAPNN 87 (208)
T ss_dssp HHHHCTTC
T ss_pred HHHHCCCC
Confidence 85 67753
No 44
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.33 E-value=0.00046 Score=61.49 Aligned_cols=69 Identities=16% Similarity=0.067 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC-------c-cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-------S-ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~-------S-~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.+++...+..|..+|..|+|.+|+..|++|+++.+.. . ...-.+-..++.||..+||.+||+..|++..
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3678889999999999999999999999999998872 1 0112367779999999999999999999875
No 45
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.33 E-value=0.00074 Score=53.67 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
...+..|..++..|+|.+|+..|++|++.-|.. .++.+.++.||...|+.++|+..|++.. ..|+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 346889999999999999999999999987654 5678889999999999999999999985 5664
No 46
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.32 E-value=0.0028 Score=51.24 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
....++..+..|..++..|+|.+|+.+|++|+++-+.. ..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34567788999999999999999999999999987654 5678889999999999999999999985 5666
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.30 E-value=0.0018 Score=54.40 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcc-cCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMV-FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~-~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
..+..|..++..|+|.+|+.+|+++++.-+ ... .+..+++.||...|+.++|+..|++.. .+|+
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 74 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN 74 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence 345556666666666666666666665554 222 445555666666666666666666553 3444
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.25 E-value=0.0016 Score=52.73 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
-+..|..++.+|+|.+|+.+|++|++.-|.. .++...++.||...|+.++|+..|+++. .+|+.
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence 4678999999999999999999999886654 4678889999999999999999999985 56654
No 49
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.23 E-value=0.0035 Score=45.45 Aligned_cols=65 Identities=17% Similarity=0.062 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
...+..|..++..|+|.+|+.+|+++++.-+. ...+...++.||...|+.++|+..|++.. .+|+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 34677899999999999999999999998654 35778899999999999999999999985 5664
No 50
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.22 E-value=0.00066 Score=67.19 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=84.2
Q ss_pred ccccccCCC--------CCCccccCCC-------cccCCCCccC-----cHHHHHHHHHHHHHHHHHHHh----------
Q 013807 217 STWGVFPRP--------GNISKTFGGG-------RTIRPGDVLE-----TAEARAAKEERTRQLLAAYKK---------- 266 (436)
Q Consensus 217 sTWGvFPRP--------~NISkayGGG-------R~IrpGe~lE-----teEEkaaR~~rtke~LaaYrk---------- 266 (436)
..+|+||.. .|....|.|+ |.|++|+++. ...-..+|.+.++ ..|.-
T Consensus 194 ~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L~---~~~~F~C~C~~C~~~ 270 (429)
T 3qwp_A 194 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR---DQYCFECDCFRCQTQ 270 (429)
T ss_dssp EEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHHH---HHHCCCCCSHHHHHT
T ss_pred ceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHHh---ccCCeEeeCCCCCCC
Confidence 358888864 3777778877 7899999862 1111223333322 22210
Q ss_pred ---hcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc----ccCccchhHHHHHHHHHHHhcCChHHHHH
Q 013807 267 ---SVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM----VFKSELHGLAALQWSICQDSLHRPKEARI 339 (436)
Q Consensus 267 ---~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v----~~~S~LGGeaqLwLAiAydA~GR~~EAia 339 (436)
..=+..++.....+++++..-..+...|+|.+|+++|+++++.. ......-..+--.|+.+|...|+.++|+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~ 350 (429)
T 3qwp_A 271 DKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALF 350 (429)
T ss_dssp TTHHHHTCSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHH
Confidence 00022334445667888888899999999999999999998653 22222225677779999999999999999
Q ss_pred HHHHH
Q 013807 340 MYEKL 344 (436)
Q Consensus 340 LYkkL 344 (436)
+|++.
T Consensus 351 ~~~~~ 355 (429)
T 3qwp_A 351 YGTRT 355 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 51
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.21 E-value=0.0045 Score=45.52 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
...+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.+|...|+.++|+..|++.. .+|+
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 346778999999999999999999999876543 5678889999999999999999999985 5664
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.21 E-value=0.0021 Score=55.19 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
.+..+.+..|++-. .++|..- ...+..|..++..|++.+|+..|++|++.- . ..++.+.++.||...|+.
T Consensus 98 g~~~~A~~~~~~al--~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~---~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 98 GYLEQALSVLKDAE--RVNPRYA---PLHLQRGLVYALLGERDKAEASLKQALALE--D---TPEIRSALAELYLSMGRL 167 (217)
T ss_dssp HHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHH--HhCcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c---chHHHHHHHHHHHHcCCH
Confidence 56677777777655 4455533 335778999999999999999999999876 2 356788999999999999
Q ss_pred HHHHHHHHHHh-cCCCH
Q 013807 335 KEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 335 ~EAiaLYkkL~-sHP~~ 350 (436)
++|+..|+++. .+|+-
T Consensus 168 ~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 168 DEALAQYAKALEQAPKD 184 (217)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999985 67764
No 53
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.16 E-value=0.008 Score=46.73 Aligned_cols=71 Identities=8% Similarity=-0.020 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 275 ~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.....++..+..|..++..|+|.+|+.+|+++++.-+.. ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 344677888999999999999999999999999986554 6778889999999999999999999985 5664
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.14 E-value=0.0017 Score=52.55 Aligned_cols=63 Identities=17% Similarity=0.059 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN 349 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~ 349 (436)
.+..|..++..|+|.+|+..|+++++.-|.. ..+...++.||...|+.++|+..|++. +.+|+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 110 YYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 5567889999999999999999998886544 467788899999999999999999886 45653
No 55
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.14 E-value=0.0022 Score=49.11 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
+..+..+.+..|++-+ .++|.. ....+..|..++..|+|.+|+.+|++|+..-+. ...+.+.++.||...|
T Consensus 21 ~~~~~~~A~~~~~~al--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 21 VGRKYPEAAACYGRAI--TRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEME 91 (137)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTT
T ss_pred HhCcHHHHHHHHHHHH--hhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHHh
Confidence 3344556666666544 334443 344677899999999999999999999998654 4568889999999999
Q ss_pred ChHHHHHHHHHHh
Q 013807 333 RPKEARIMYEKLQ 345 (436)
Q Consensus 333 R~~EAiaLYkkL~ 345 (436)
+.++|+..|++..
T Consensus 92 ~~~~A~~~~~~a~ 104 (137)
T 3q49_B 92 SYDEAIANLQRAY 104 (137)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999985
No 56
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.13 E-value=0.003 Score=50.94 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
+.-.+..|..++..|+|.+|+.+|++|+.+-+.. ..+-+.++.||..+|+.++|+..|++.. .+|+-
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETN----EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 3456778999999999999999999999986543 5688899999999999999999999985 57763
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.12 E-value=0.0014 Score=55.46 Aligned_cols=64 Identities=11% Similarity=-0.046 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..+..|..++..|+|.+|+.+|+++++...... ..-..+...++.+|...|+.++|+..|++..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 334445555555555555555555544432221 1223344445555555555555555555554
No 58
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.11 E-value=0.007 Score=44.11 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
..+..|..++..|+|.+|+.+|++++...+.. ..+...++.+|...|+.++|+..|+++. .+|+.
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 35566788888888888888888887765433 3556677888888888888888888774 45543
No 59
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.10 E-value=0.0072 Score=50.30 Aligned_cols=75 Identities=13% Similarity=0.009 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQ 358 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkr 358 (436)
...+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.++.||...|+.++|+..|++.. .+|. ..+...-..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN----VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 456678999999999999999999999986543 5788999999999999999999999985 5664 444443333
Q ss_pred H
Q 013807 359 F 359 (436)
Q Consensus 359 L 359 (436)
+
T Consensus 165 ~ 165 (198)
T 2fbn_A 165 C 165 (198)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.09 E-value=0.0033 Score=54.24 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
..+..|..++..|+|.+|+..|+++++..+....+...+.+.++.||...|+.++|+.+|++.. .+|+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3456688899999999999999999998888777767777788999999999999999999986 4663
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.09 E-value=0.0046 Score=52.72 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=59.9
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMF 361 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLly 361 (436)
+..|..++..|+|.+|+..|++|+++-|.. ..+.+.++.||...|+.++|+..|+++. .+|+-..-.-..-.+|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 338999999999999999999999987654 4778899999999999999999999985 6886543333333333
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.06 E-value=0.0015 Score=58.87 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC--ccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--SELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~--S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
...+..|..++..|+|.+|+.+|++|++..... ...-..+...++.+|...|+.++|+..|++..
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455555555566666666666655544322 12223444555556666666666666666555
No 63
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0025 Score=52.70 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.+++..+..|..++..|+|.+|+.+|+++++.- . ...+...++.||...|+.++|+..|+++.
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 567788999999999999999999999999886 2 25788899999999999999999999985
No 64
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.03 E-value=0.0057 Score=50.27 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc------------cchhHHHHHH
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS------------ELHGLAALQW 324 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S------------~LGGeaqLwL 324 (436)
..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|++|++..+.+. .-...+...+
T Consensus 53 ~~~A~~~~~~al--~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 53 MTEAEKAFTRSI--NRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp HHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 344444554433 223332 33456778889999999999999999988776544 2235778889
Q ss_pred HHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013807 325 SICQDSLHRPKEARIMYEKLQ-SHPNALV 352 (436)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL~-sHP~~eV 352 (436)
+.||...|+.++|+..|++.. .+|....
T Consensus 128 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 128 AFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 999999999999999998875 5676543
No 65
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.02 E-value=0.0044 Score=45.19 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
....+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||...|+.++|+.+|++.. .+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 3446778999999999999999999999876533 4677889999999999999999999985 4553
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.00 E-value=0.0087 Score=58.24 Aligned_cols=77 Identities=12% Similarity=-0.063 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCch-hhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 013807 281 EKALKDGDSLMDSGKL-KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ 358 (436)
Q Consensus 281 eea~~~Gk~AmerGkY-r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr 358 (436)
+..+..|..++..|+| .+|+.+|++|+++-+.. ..+...|+.||-..|+.++|+..|++.. ..|+..+...-..
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~ 178 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3456679999999999 99999999999986543 5788899999999999999999999985 6888544443333
Q ss_pred HHH
Q 013807 359 FMF 361 (436)
Q Consensus 359 Lly 361 (436)
+++
T Consensus 179 ~~~ 181 (474)
T 4abn_A 179 VLR 181 (474)
T ss_dssp HHT
T ss_pred HHH
Confidence 333
No 67
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.99 E-value=0.0031 Score=47.70 Aligned_cols=68 Identities=13% Similarity=-0.025 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..+...+..|..++..|+|.+|+.+|+++++...... ..-+.+..+++.+|-..|+.++|+..|++..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555677888899999999999999999988775432 2224577788999999999999999998864
No 68
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0074 Score=49.83 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHHhcC
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLH 332 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~G 332 (436)
+..+.+..|++-..++ +. ....+..|..++..|+|.+|+.+|+++++..+....-. ..+...++.||...|
T Consensus 20 ~~~~A~~~~~~a~~~~-~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (258)
T 3uq3_A 20 QFDEAIEHYNKAWELH-KD-----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG 93 (258)
T ss_dssp CHHHHHHHHHHHHHHS-CC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhh-cc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence 3445555555544333 11 23467789999999999999999999999876542222 688889999999999
Q ss_pred ChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 013807 333 RPKEARIMYEKLQ-SHPNALVSKRARQF 359 (436)
Q Consensus 333 R~~EAiaLYkkL~-sHP~~eVrKQAkrL 359 (436)
+.++|+..|++.. .+|...+-.+..++
T Consensus 94 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 121 (258)
T 3uq3_A 94 DLKKTIEYYQKSLTEHRTADILTKLRNA 121 (258)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence 9999999999986 68887665554443
No 69
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0028 Score=58.18 Aligned_cols=81 Identities=12% Similarity=0.086 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
.+..+.+..|++-.-+ +|. ....+..|..++..|+|.+|+..|+++++.-+.. ..+.+.++.||...|+.
T Consensus 20 g~~~~A~~~~~~al~~--~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 20 KKYDDAIKYYNWALEL--KED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY----SKVLLRRASANEGLGKF 89 (514)
T ss_dssp SCHHHHHHHHHHHHHH--CCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHhc--Ccc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH----HHHHHHHHHHHHHHhhH
Confidence 3445555555555432 332 3345556666777777777777777766654432 25556667777777777
Q ss_pred HHHHHHHHHHh
Q 013807 335 KEARIMYEKLQ 345 (436)
Q Consensus 335 ~EAiaLYkkL~ 345 (436)
++|+..|+++.
T Consensus 90 ~~A~~~~~~~~ 100 (514)
T 2gw1_A 90 ADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777664
No 70
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.93 E-value=0.0023 Score=56.64 Aligned_cols=89 Identities=10% Similarity=-0.016 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhcCCcCCcchH-HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhc
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLK-SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSL 331 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k-~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~ 331 (436)
.+..+.+..|++-..+ +|... ..+...+..|..++..|+|.+|+.+|++|++...... ..-..+...++.+|...
T Consensus 23 g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp TCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 3445555666554432 34322 2344555666666777777777777777666554322 22245555666677777
Q ss_pred CChHHHHHHHHHHh
Q 013807 332 HRPKEARIMYEKLQ 345 (436)
Q Consensus 332 GR~~EAiaLYkkL~ 345 (436)
|+.++|+..|++..
T Consensus 101 g~~~~A~~~~~~al 114 (406)
T 3sf4_A 101 GNFDEAIVCCQRHL 114 (406)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777776666
No 71
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.90 E-value=0.0045 Score=55.79 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS 353 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr 353 (436)
..+..+..|..++..|++.+|+..|+++++.-|.+ ..+.+.|+.+|-..||.++|+.+|+++. .+|+....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence 34567899999999999999999999999988765 4788899999999999999999999995 68876544
No 72
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.89 E-value=0.0023 Score=61.15 Aligned_cols=55 Identities=11% Similarity=-0.030 Sum_probs=24.5
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.|..++..|+|.+|+.+|++|+++-+. ...+.+.++.||..+|+.++|+..|++.
T Consensus 279 la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 279 IGACKLKMSDWQGAVDSCLEALEIDPS----NTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344444444444444444444443322 1233444444444444444444444443
No 73
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.87 E-value=0.0054 Score=58.85 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh
Q 013807 251 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS 330 (436)
Q Consensus 251 aaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA 330 (436)
..+.+|..+.+..+++.... .|+. ....-.|-.|..+-..|++.+|+.+|++|...- ..-..--++++++++||..
T Consensus 145 ~~~~~r~~dA~~~l~~a~~~-~d~~--~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 145 YGAAERWTDVIDQVKSAGKW-PDKF--LAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHTTCHHHHHHHHTTGGGC-SCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHhhcc-CCcc--cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHH
Confidence 45556677777777644322 2333 233456888999999999999999999997321 0011256799999999999
Q ss_pred cCChHHHHHHHHHHh-cCCC
Q 013807 331 LHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 331 ~GR~~EAiaLYkkL~-sHP~ 349 (436)
.||.+||+++|+++. .+|.
T Consensus 221 lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTCHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCc
Confidence 999999999999996 7998
No 74
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.87 E-value=0.003 Score=53.37 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.+..|..++..|+|.+|+.+|+++++ .+.+..+-+.+-+.++.||...|+.++|+..|++.
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 100 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34445555556666666666666555 44444444555555555555555555555555555
No 75
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.87 E-value=0.0038 Score=56.29 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (436)
..+..+.+..|++-+ ..+|. .....+..|..++..|+|.+|+..|++|+++-+.. ..+...++.+|...|+
T Consensus 17 ~g~~~~A~~~~~~al--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 17 GRKYPEAAACYGRAI--TRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMES 87 (281)
T ss_dssp TTCHHHHHHHHHHHH--HHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHH--HhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence 344555666666544 22332 24455666778888888888888888887765433 3566777888888888
Q ss_pred hHHHHHHHHHHh
Q 013807 334 PKEARIMYEKLQ 345 (436)
Q Consensus 334 ~~EAiaLYkkL~ 345 (436)
.++|+..|++..
T Consensus 88 ~~~A~~~~~~al 99 (281)
T 2c2l_A 88 YDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887753
No 76
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.87 E-value=0.00069 Score=58.17 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
.+..+.+..|++-.-++ + ..+-.+..|..++..|+|.+|+..|+++++.-|.. ..+.+.++.+|...|+.
T Consensus 132 g~~~~A~~~~~~al~~~-~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-D-----TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD----LDLRVRYASALLLKGKA 201 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHTC----
T ss_pred CChHHHHHHHHHHHhcc-c-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHccCH
Confidence 34455666666655444 2 12345788999999999999999999999987654 36778899999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 013807 335 KEARIMYEKLQSHPN 349 (436)
Q Consensus 335 ~EAiaLYkkL~sHP~ 349 (436)
++|+..|++.-.|-+
T Consensus 202 ~~A~~~~~~~~~~~~ 216 (217)
T 2pl2_A 202 EEAARAAALEHHHHH 216 (217)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHhhccC
Confidence 999999999987643
No 77
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.85 E-value=0.012 Score=49.34 Aligned_cols=62 Identities=8% Similarity=-0.111 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
....+..|..++..|+|.+|+.+|+++++.-+. ...+...++.+|-..|+.++|+.+|++..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344455566666666666666666666555432 23344555555555555555555555553
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.82 E-value=0.0088 Score=49.71 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
..+...+..|..++..|+|.+|+.+|++|++... ........+...++.||...|+.++|+.+|++...
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677889999999999999999999988752 22345577888899999999999999999999854
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.81 E-value=0.013 Score=49.22 Aligned_cols=68 Identities=7% Similarity=0.009 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
..+..|..++..|+|.+|+..|+++++.-+.+..+. +.+-+.++.||...|+.++|+..|++.. .+|+
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 355667777888888888888888877776554331 3456667777888888888888887775 4665
No 80
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.81 E-value=0.0037 Score=55.63 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcc-------hH--HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---hH
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPK-------LK--SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GL 319 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~-------~k--~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---Ge 319 (436)
.+..+..+.+..|++-..+ +|. .. .....-+..|..+...|+|.+|+..|++|+++.+...++. +.
T Consensus 22 ~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~ 99 (159)
T 2hr2_A 22 LVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 99 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH
Confidence 3456778889999987744 443 11 1223566779999999999999999999999833333333 44
Q ss_pred HH----HHHHHHHHhcCChHHHHHHHHHHh
Q 013807 320 AA----LQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 320 aq----LwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
+- ..++.||..+||.+||+.-|++..
T Consensus 100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 100 LWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 55 678999999999999999999874
No 81
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.80 E-value=0.0046 Score=53.32 Aligned_cols=86 Identities=23% Similarity=0.220 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (436)
..+..+.+..|++-.. .+|. .....+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.||...|+
T Consensus 16 ~g~~~~A~~~~~~~l~--~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 16 AGQLADALSQFHAAVD--GDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----TAARLQRGHLLLKQGK 86 (359)
T ss_dssp TTCHHHHHHHHHHHHH--HCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHh--hCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----chHHHHHHHHHHHcCC
Confidence 3445566666665542 2332 25566777888888888888888888888775433 3677788888888888
Q ss_pred hHHHHHHHHHHh-cCC
Q 013807 334 PKEARIMYEKLQ-SHP 348 (436)
Q Consensus 334 ~~EAiaLYkkL~-sHP 348 (436)
.++|+..|+++. .+|
T Consensus 87 ~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred hHHHHHHHHHHHhcCC
Confidence 888888888885 466
No 82
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.77 E-value=0.0038 Score=58.00 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch-----------hHHHHHHHHHHHhcCChHHHHHHHHHHh-c
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEARIMYEKLQ-S 346 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EAiaLYkkL~-s 346 (436)
.+...+..|..++..|+|.+|+.+|++|+.+.+....+. ..+.+.++.||-..|+.++|+..|++.. .
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445566778888888888888888888888877653222 3566778888888888888888888774 4
Q ss_pred CCC
Q 013807 347 HPN 349 (436)
Q Consensus 347 HP~ 349 (436)
+|+
T Consensus 226 ~p~ 228 (336)
T 1p5q_A 226 DSN 228 (336)
T ss_dssp CTT
T ss_pred CCC
Confidence 554
No 83
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.76 E-value=0.0037 Score=56.88 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCC
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHP 348 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP 348 (436)
+..|..++..|+|.+|+.+|+++++..+....+-.++...++.||...|+.++|+.+|++. ..+|
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 4446666677777777777777666555444333455555666666666666666666664 3455
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.76 E-value=0.0096 Score=49.51 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cCccchhHHHHHHHHHHHhcC
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~G 332 (436)
.++.|.-+++-.+.+ ....+...+..|..++..|+|.+|+.+|++|++... .....-..+...++.||-..|
T Consensus 24 ~~~al~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 99 (283)
T 3edt_B 24 CKQALEDLEKTSGHD----HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99 (283)
T ss_dssp HHHHHHHHHHHHCSS----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence 344455554443321 234566678899999999999999999999988752 223455778888999999999
Q ss_pred ChHHHHHHHHHHhc
Q 013807 333 RPKEARIMYEKLQS 346 (436)
Q Consensus 333 R~~EAiaLYkkL~s 346 (436)
+.++|+.+|++...
T Consensus 100 ~~~~A~~~~~~al~ 113 (283)
T 3edt_B 100 KYKEAEPLCKRALE 113 (283)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999999853
No 85
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.76 E-value=0.0037 Score=58.10 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
..++..+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||-..|+.++|+..|+++. .+|+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 91 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 345556666666666666666666666666655433 2455556666666666666666666653 3444
No 86
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.76 E-value=0.0028 Score=52.13 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 352 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 352 (436)
+..+..|..++..|+|.+|+..|+++++.-|.+ ..+.+.++.+|...|+.++|+.+|+++. .+|++.+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 75 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSY 75 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH
Confidence 457888999999999999999999999877654 5678889999999999999999999985 5665544
No 87
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.75 E-value=0.0034 Score=61.07 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..+..|..++..|+|.+|+.+|++|+++-+.+ -.+.+.++.||-.+|+.++|+..|++..
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34455666666666666666666666655433 3455566666666666666666666653
No 88
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.74 E-value=0.0083 Score=57.31 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=51.3
Q ss_pred HHHhCCchhhhhhHHHHHHhhccc------------CccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 289 SLMDSGKLKEALPFYEKVMNKMVF------------KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 289 ~AmerGkYr~AV~~lEkA~~~v~~------------~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.++..|+|.+|+.+|++|+..++. ....-..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus 232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 467889999999999999986544 345567888899999999999999999999986 5675
No 89
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.73 E-value=0.0058 Score=46.15 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
...+...+..|..++..|+|.+|+.+|+++++...... ..-+.+...++.+|...|+.++|+..|++..
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455677889999999999999999999998875432 2225677889999999999999999999874
No 90
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.73 E-value=0.0054 Score=55.38 Aligned_cols=82 Identities=15% Similarity=-0.025 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch--hHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKR 355 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQ 355 (436)
..+...+..|..++..|+|.+|+.+|++|++..+...... +.+.+.++.||-..|+.++|+..|++...+|.-.-...
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e 232 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHH
Confidence 3455667889999999999999999999999876554333 34566788899999999999999999775554333334
Q ss_pred HHHH
Q 013807 356 ARQF 359 (436)
Q Consensus 356 AkrL 359 (436)
++.+
T Consensus 233 ~~~l 236 (307)
T 2ifu_A 233 CAAL 236 (307)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 91
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.73 E-value=0.012 Score=54.66 Aligned_cols=93 Identities=16% Similarity=0.072 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhcCCcCCcc----------hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHH
Q 013807 254 EERTRQLLAAYKKSVGLNVDPK----------LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ 323 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~----------~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLw 323 (436)
..+..+.+..|++-+.++-+.. ....+...+..|..++..|+|.+|+.+|++|+++-+.+ ..+.+.
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~ 235 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSR 235 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHH
Confidence 3455677777877664433321 01124556778999999999999999999999987654 467889
Q ss_pred HHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 324 WSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
++.||..+|+.++|+..|++.. .+|+-
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999985 57753
No 92
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.73 E-value=0.0089 Score=53.12 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhh---cccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNK---MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~---v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.+...+..|..++..|+|.+|+.+|++|++. .+....+...+...++.||...|+.++|+..|++..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445566788888888888888888888743 333333334677778888888888888888887754
No 93
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.72 E-value=0.0061 Score=51.80 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc----CccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 275 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF----KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 275 ~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~----~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.....++..+..|..++..|+|.+|+.+|+++++.... ....-..+...++.+|-..|+.++|+.+|++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456677889999999999999999999999987543 345567888899999999999999999999875
No 94
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.71 E-value=0.0028 Score=59.06 Aligned_cols=72 Identities=26% Similarity=0.276 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc--chh-----------HHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHG-----------LAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGG-----------eaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
..++..+..|..++..|+|.+|+.+|++|+...+.... .-| .+.+.++.||-..|+.++|+..|++.
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666788999999999999999999999988765431 112 27788999999999999999999987
Q ss_pred h-cCCC
Q 013807 345 Q-SHPN 349 (436)
Q Consensus 345 ~-sHP~ 349 (436)
. .+|+
T Consensus 257 l~~~p~ 262 (338)
T 2if4_A 257 LTEEEK 262 (338)
T ss_dssp HHHCTT
T ss_pred HHhCCC
Confidence 4 5664
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.70 E-value=0.0078 Score=49.47 Aligned_cols=84 Identities=13% Similarity=0.069 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (436)
..+..+.+..|++-. ++ .....+..|..++..|+|.+|+.+|++|+..-+.. ..+.+.++.||-..|+
T Consensus 19 ~~~~~~A~~~~~~a~----~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ----DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEK 86 (213)
T ss_dssp TTCHHHHHHHHHTSS----SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHc----CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHccc
Confidence 345566777777552 33 23467888999999999999999999999886543 4677889999999999
Q ss_pred hHHHHHHHHHHh-cCCC
Q 013807 334 PKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 334 ~~EAiaLYkkL~-sHP~ 349 (436)
.++|+..|++.. .+|.
T Consensus 87 ~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 999999999985 3443
No 96
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.70 E-value=0.0035 Score=52.96 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 348 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 348 (436)
..+..|..++..|+|.+|+.+|+++++.-+... .+.+.++.||-..|+.++|+..|+++...|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 67 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSKV 67 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 467889999999999999999999998876543 467788999999999999999999997644
No 97
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.67 E-value=0.0083 Score=46.62 Aligned_cols=63 Identities=22% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.+..|..++..|++.+|+.+|++++...+.. ..+.+.++.+|...|+.++|+.+|+++. .+|.
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 4566777888888888888888887775432 4566777888888888888888888764 4443
No 98
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.64 E-value=0.013 Score=47.28 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.+..|..++..|++.+|+.+|+++++..+.. ..+...++.||...|+.++|+..|++.
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----PPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555555555543322 344445555555555555555555554
No 99
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.63 E-value=0.02 Score=46.20 Aligned_cols=63 Identities=10% Similarity=-0.018 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc-CChHHHHHHHHHHhc
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQS 346 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~s 346 (436)
....+..|..++..|++.+|+.+|+++++..+.. ..+...++.+|-.. |+.++|+.+|+++..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 3344555777777777777777777777765432 34566677777777 777777777777754
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.62 E-value=0.009 Score=53.54 Aligned_cols=77 Identities=19% Similarity=0.130 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch-h--HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-G--LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKR 355 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG-G--eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQ 355 (436)
....+..|..++..|+|.+|+.+|++|++..+...... + .+.+.++.||...|+.++|+..|++.. -+|.-.-...
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 44566779999999999999999999999887665442 3 356778999999999999999999986 4665443333
Q ss_pred H
Q 013807 356 A 356 (436)
Q Consensus 356 A 356 (436)
+
T Consensus 238 ~ 238 (292)
T 1qqe_A 238 S 238 (292)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.60 E-value=0.013 Score=42.75 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
..+..|..++..|++.+|+.+|++++..-+.. ..+.+.++.+|-..|+.++|+.+|+++. .+|.
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 34556888888888888888888888765432 4566678888888888888888888874 4553
No 102
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.59 E-value=0.03 Score=46.89 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (436)
..+.+..|++-.....+|. .....+..|..++..|++.+|+.+|+++++.-+.. ..+.+.++.+|...|+.++
T Consensus 121 ~~~A~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPE---RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----PSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHH
Confidence 3444445554433112332 33456778999999999999999999999876543 5677889999999999999
Q ss_pred HHHHHHHHh-cCCC
Q 013807 337 ARIMYEKLQ-SHPN 349 (436)
Q Consensus 337 AiaLYkkL~-sHP~ 349 (436)
|+..|+++. .+|.
T Consensus 194 A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ 207 (252)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhCcC
Confidence 999999985 4553
No 103
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.58 E-value=0.018 Score=44.76 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh
Q 013807 255 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 334 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 334 (436)
.+..+.+..|++-. ..+|.. ....+..|..++..|++.+|+.+|+++++..+.. ..+.+.++.+|...|+.
T Consensus 22 ~~~~~A~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 22 GRYSQAVMLLEQVY--DADAFD---VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN----VKVATVLGLTYVQVQKY 92 (186)
T ss_dssp TCHHHHHHHHTTTC--CTTSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHH--HhCccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCH
Confidence 34556666666544 444443 3446778999999999999999999999885433 46778889999999999
Q ss_pred HHHHHHHHHHh-cCCC
Q 013807 335 KEARIMYEKLQ-SHPN 349 (436)
Q Consensus 335 ~EAiaLYkkL~-sHP~ 349 (436)
++|+.+|+++. .+|.
T Consensus 93 ~~A~~~~~~~~~~~~~ 108 (186)
T 3as5_A 93 DLAVPLLIKVAEANPI 108 (186)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCcH
Confidence 99999999985 4654
No 104
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.54 E-value=0.013 Score=49.11 Aligned_cols=60 Identities=12% Similarity=-0.115 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
.+..|..++..|++.+|+.+|+++++.-+.. ..+.+.++.+|...|+.++|+.+|+++..
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445677777777777777777777665432 45666677777777777777777777754
No 105
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.51 E-value=0.017 Score=48.99 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC----ccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..+...+..|..++..|+|.+|+.+|+++++..... ...-..+...++.||...|+.++|+.+|++..
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455667788999999999999999999999875332 44556788889999999999999999999885
No 106
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.48 E-value=0.012 Score=52.49 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.||...|+.++|+..|++.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555555555555555555555544322 344445555555555555555555554
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.47 E-value=0.016 Score=47.19 Aligned_cols=85 Identities=9% Similarity=-0.049 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (436)
..+.+..|++-. .++|..- +.-+..|..++..|++.+|+.+|++|+++-|.. -++.+.++.+|...|+.++
T Consensus 47 ~~~A~~~~~~al--~~~p~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 47 YDLAKKYICTYI--NVQERDP---KAHRFLGLLYELEENTDKAVECYRRSVELNPTQ----KDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHH
Confidence 344555555444 4455542 346678999999999999999999999987654 4577889999999999998
Q ss_pred HHHHH-HH-HhcCCCH
Q 013807 337 ARIMY-EK-LQSHPNA 350 (436)
Q Consensus 337 AiaLY-kk-L~sHP~~ 350 (436)
|+..| ++ |+-+|+-
T Consensus 118 aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 118 RAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhCcCC
Confidence 77654 65 4567753
No 108
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.44 E-value=0.017 Score=46.61 Aligned_cols=64 Identities=6% Similarity=-0.076 Sum_probs=44.2
Q ss_pred HHHHHHH-HHhCCch--hhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 283 ALKDGDS-LMDSGKL--KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 283 a~~~Gk~-AmerGkY--r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
.+..|.. ++..|+| .+|+.+|++++..-+.. ..+.+.++.+|...|+.++|+..|+++. .+|..
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 4555666 6677777 77888887777765543 3456667777777888888888777764 55654
No 109
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.43 E-value=0.022 Score=47.75 Aligned_cols=66 Identities=20% Similarity=0.066 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (436)
..+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.++.||-..|+.++|+..|+++. .+|+..
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 35667999999999999999999999987654 4788899999999999999999999985 566654
No 110
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.38 E-value=0.012 Score=52.35 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCch----------hhhhhHHHHHHhhcccCccchhH
Q 013807 250 RAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKL----------KEALPFYEKVMNKMVFKSELHGL 319 (436)
Q Consensus 250 kaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkY----------r~AV~~lEkA~~~v~~~S~LGGe 319 (436)
..+|..+..+.+..|+.-+ .++|..- +.-+..|..+++.|++ .+|+..|++|+++-|.. -+
T Consensus 11 ~~~r~~~feeA~~~~~~Ai--~l~P~~a---ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~----~~ 81 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTY--KSNPLDA---DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK----DE 81 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC----HH
T ss_pred HHHHHhHHHHHHHHHHHHH--HHCCCCH---HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc----HH
Confidence 4566777777888887666 4455533 3355678888888775 49999999999998764 45
Q ss_pred HHHHHHHHHHhcC-----------ChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 013807 320 AALQWSICQDSLH-----------RPKEARIMYEKLQ-SHPNALVSKRARQF 359 (436)
Q Consensus 320 aqLwLAiAydA~G-----------R~~EAiaLYkkL~-sHP~~eVrKQAkrL 359 (436)
+...|.+||.+.| +.++|+..|++-. -.|+-..-++|.++
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6778899998875 8999999999975 68887776666554
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.37 E-value=0.015 Score=42.42 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.+..|..++..|++.+|+.+|+++++.-+.. ..+...++.+|-..|+.++|+.+|+++. .+|.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 4667899999999999999999998875432 4567778999999999999999999985 4554
No 112
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.36 E-value=0.016 Score=51.70 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=26.0
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
..|..++..|+|.+|+.+|+++++..+.. ..+...++.||...|+.++|+..|++.
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444555555555555544443322 223344444455555555555555444
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.36 E-value=0.015 Score=47.03 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHH-HHhcCCh--HHHHHHHHHHh-cCCCH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC-QDSLHRP--KEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiA-ydA~GR~--~EAiaLYkkL~-sHP~~ 350 (436)
...+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.| |...|+. ++|+.+|+++. .+|+-
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 346788999999999999999999999987654 5677889999 8899998 99999999985 57763
No 114
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.36 E-value=0.0097 Score=62.86 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (436)
+..+.+..|++-. .++|.. .+..+..|..+++.|+|.+|+++|++|+++-+.. .++...|+.+|...|+.+
T Consensus 58 ~~~eA~~~~~~Al--~l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 58 KLQEALMHYKEAI--RISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----ADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH
Confidence 4455566666544 334443 2335666788888888888888888887765433 466777888888888888
Q ss_pred HHHHHHHHHh-cCCC
Q 013807 336 EARIMYEKLQ-SHPN 349 (436)
Q Consensus 336 EAiaLYkkL~-sHP~ 349 (436)
+|+..|++.. -+|+
T Consensus 129 eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 129 EAIASYRTALKLKPD 143 (723)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHhCCC
Confidence 8888888763 5665
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.34 E-value=0.04 Score=53.77 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
+..+..+.+..|++-.. ++|.. .+..+..|..++..|+|.+|+.+|++|++.-+.. ..+...++.||...|
T Consensus 35 ~~g~~~~A~~~~~~al~--~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 35 GMGDTTAGEMAVQRGLA--LHPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAG 105 (568)
T ss_dssp HHTCHHHHHHHHHHHHT--TSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHH--hCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcC
Confidence 33456677777776654 44543 3446778999999999999999999999986544 567888999999999
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 013807 333 RPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 333 R~~EAiaLYkkL~-sHP~ 349 (436)
+.++|+..|++.. .+|+
T Consensus 106 ~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 106 QAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 9999999999974 5665
No 116
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.00075 Score=49.70 Aligned_cols=85 Identities=9% Similarity=0.158 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCC
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR 333 (436)
+..+.+..|++-. .++|.. ....+..|..++..|+|.+|+..|++|+++-+... ..-+.+.+.++.||..+|+
T Consensus 19 ~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 19 LYREAVHCYDQLI--TAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666544 344543 33467889999999999999999999999876642 2237788899999999999
Q ss_pred hHHHHHHHHHHh
Q 013807 334 PKEARIMYEKLQ 345 (436)
Q Consensus 334 ~~EAiaLYkkL~ 345 (436)
.++|+..++++.
T Consensus 94 ~~~a~~~~~~~~ 105 (111)
T 2l6j_A 94 VQIPVVEVDELP 105 (111)
T ss_dssp CCCCSSSSSSCS
T ss_pred HhhhHhHHHHhH
Confidence 999988877663
No 117
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.32 E-value=0.013 Score=47.29 Aligned_cols=68 Identities=15% Similarity=0.005 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc---cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..+...+..|..++..|+|.+|+.+|++|++...... ..-+.+...++.+|-..|+.++|+..|++..
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566778888999999999999999888754322 2346677778888999999999998888764
No 118
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.32 E-value=0.038 Score=48.65 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
+..+..+.+..|++-. .++|... .+...+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||...|
T Consensus 193 ~~~~~~~A~~~~~~a~--~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 193 SDSLFLEVKELFLAAV--RLDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHH--HHSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred hcccHHHHHHHHHHHH--HhCcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHcC
Confidence 4445555566665544 2334311 23446778999999999999999999999886543 567888999999999
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 013807 333 RPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 333 R~~EAiaLYkkL~-sHP~ 349 (436)
+.++|+..|++.. .+|.
T Consensus 266 ~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPG 283 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 9999999999974 5665
No 119
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.32 E-value=0.013 Score=48.29 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 352 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 352 (436)
..+..|..++..|+|.+|+.+|++++...+.. ..+.+.++.||...|+.++|+..|+++. .+|+...
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH----ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 34566777777788888888887777765432 4466677777888888888888887764 5665443
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.31 E-value=0.012 Score=47.39 Aligned_cols=68 Identities=15% Similarity=0.039 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch--hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..+...+..|..++..|+|.+|+.+|+++++......... ..+...++.+|...|+.++|+..|++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4555677889999999999999999999998765444333 4445889999999999999999998763
No 121
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.27 E-value=0.011 Score=62.37 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 333 (436)
..+..+.++.|++-. .++|.. .+..+..|..++..|+|.+|+.+|++|+++-+.. .++...|+.||...|+
T Consensus 22 ~G~~~eAi~~~~kAl--~l~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 22 QGNIEEAVRLYRKAL--EVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQD 92 (723)
T ss_dssp TTCHHHHHHHHHHHH--HHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence 345667778887665 556654 3346778999999999999999999999886543 5788899999999999
Q ss_pred hHHHHHHHHHHh-cCCCH
Q 013807 334 PKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 334 ~~EAiaLYkkL~-sHP~~ 350 (436)
.++|+..|++.. -+|+-
T Consensus 93 ~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 93 VQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999974 57753
No 122
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.25 E-value=0.021 Score=55.61 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=44.0
Q ss_pred CchhhhhhHHHHHHhhcccCc-----------cchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 294 GKLKEALPFYEKVMNKMVFKS-----------ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 294 GkYr~AV~~lEkA~~~v~~~S-----------~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
|+|.+|+.+|++|+++.+... .+--.+.++++.||-.+|+.++|+..|++.. .+|+
T Consensus 282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 778888888888888877763 3445677888999999999999999998874 4554
No 123
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.24 E-value=0.031 Score=50.79 Aligned_cols=87 Identities=23% Similarity=0.210 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChH
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 335 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 335 (436)
+..+.+..|++-. ..+|.. ....+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.||...|+.+
T Consensus 41 ~~~~A~~~~~~~l--~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 41 QLADALSQFHAAV--DGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHH--HhCCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHH
Confidence 4445555555433 222221 4455666888888888888888888888775443 466777888888888888
Q ss_pred HHHHHHHHHh-cCCCHH
Q 013807 336 EARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 336 EAiaLYkkL~-sHP~~e 351 (436)
+|+.+|+++. ..|+..
T Consensus 112 ~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHhcCCCCh
Confidence 8888888875 566644
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.21 E-value=0.036 Score=49.23 Aligned_cols=91 Identities=7% Similarity=0.016 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhcCCcC-CcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhH--HHHHHHHHHHhc
Q 013807 255 ERTRQLLAAYKKSVGLNV-DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL--AALQWSICQDSL 331 (436)
Q Consensus 255 ~rtke~LaaYrk~~Gl~V-dp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGe--aqLwLAiAydA~ 331 (436)
.+..+.+.-|.+-.-..- ++..+....-.+..|...+..|+|.+|+.+|++|++........-++ +...++.||...
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 168 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN 168 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Confidence 334455555555443222 22222222223347889999999999999999999965444444444 457799999999
Q ss_pred CChHHHHHHHHHHh
Q 013807 332 HRPKEARIMYEKLQ 345 (436)
Q Consensus 332 GR~~EAiaLYkkL~ 345 (436)
|+.++|+..|++..
T Consensus 169 g~~~~A~~~~~~al 182 (293)
T 3u3w_A 169 GYLKKGIDLFEQIL 182 (293)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999975
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.21 E-value=0.012 Score=48.29 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 343 (436)
+..|..++..|+|.+|+..|++++..-|... ...+...|+.+|...|+.++|+..|++
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKVNLGAQ--DGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT--TTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCcccC--hHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 4444445555555555555555444432211 123344444455555555555555543
No 126
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.18 E-value=0.047 Score=53.09 Aligned_cols=102 Identities=13% Similarity=0.027 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhC--------CchhhhhhHHHHHHhhcccCccchhHHHHHH
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS--------GKLKEALPFYEKVMNKMVFKSELHGLAALQW 324 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~Amer--------GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwL 324 (436)
+..+..+.+..|++-+ .++|..- ...+..|..++.. |+|.+|+.+|++|+++-+. ..-...+.+.+
T Consensus 191 ~~g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~l 264 (474)
T 4abn_A 191 HSRHVMDSVRQAKLAV--QMDVLDG---RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNR 264 (474)
T ss_dssp HHHHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHH
Confidence 4455667777777655 3455432 3456778888888 9999999999999998542 22456788899
Q ss_pred HHHHHhcCChHHHHHHHHHHh-cCCCH-HHHHHHHHHH
Q 013807 325 SICQDSLHRPKEARIMYEKLQ-SHPNA-LVSKRARQFM 360 (436)
Q Consensus 325 AiAydA~GR~~EAiaLYkkL~-sHP~~-eVrKQAkrLl 360 (436)
+.||...|+.++|+..|++.. .+|+- .......+++
T Consensus 265 g~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 265 ATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999984 56653 3333333333
No 127
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.16 E-value=0.024 Score=46.71 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
..+..|..++..|++.+|+.+|+++++..+.. ..+.+.++.+|...|+.++|+.+|+++. .+|.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 157 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 34556777778888888888888877765433 4566777788888888888888887764 4553
No 128
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.14 E-value=0.016 Score=49.61 Aligned_cols=89 Identities=12% Similarity=-0.003 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (436)
.+..+..+.+..|++-.. .+| ......+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.||...
T Consensus 32 ~~~~~~~~A~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQ--AAP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNE 102 (327)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHH--hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHc
Confidence 334455566666665442 222 134455566888888888888888888887765432 45677778888888
Q ss_pred CChHHHHHHHHHHh-cCCC
Q 013807 332 HRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 332 GR~~EAiaLYkkL~-sHP~ 349 (436)
|+.++|+..|+++. .+|.
T Consensus 103 ~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHHHhCCc
Confidence 88888888888874 4444
No 129
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.12 E-value=0.017 Score=52.71 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc---cCc----cchh--------------HHHHHHHHHHHhcCChH
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV---FKS----ELHG--------------LAALQWSICQDSLHRPK 335 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~---~~S----~LGG--------------eaqLwLAiAydA~GR~~ 335 (436)
..+++..+--|+.+|..|.|++|..+|.+|++..- .++ -+|. |+..+.|.||-.+++.+
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 34555677789999999999999999999965443 222 1221 68899999999999999
Q ss_pred HHHHHHHHH-hcCCCHHHH
Q 013807 336 EARIMYEKL-QSHPNALVS 353 (436)
Q Consensus 336 EAiaLYkkL-~sHP~~eVr 353 (436)
+||++-+.| .+.-.+.|-
T Consensus 140 ~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 140 DAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp HHHHHHHTSCGGGCCHHHH
T ss_pred HHHHHHhcCCchhcCHHHH
Confidence 999998887 355555553
No 130
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.12 E-value=0.017 Score=52.62 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013807 288 DSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN 349 (436)
Q Consensus 288 k~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~ 349 (436)
..+++.|+|.+|+..|+++++..+.. ..+...+++||...||.++|+..|++. ..+|+
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPT----LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 44557799999999999999986542 456667899999999999999999995 56774
No 131
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.10 E-value=0.037 Score=47.43 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc-----cchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-----~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
...+..|..++..|+|.+|+.+|+++++..+... .-...+...++.||...|+.++|+..|++.. .+|+
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 3456778899999999999999999988764322 1224577888999999999999999999875 4554
No 132
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.02 E-value=0.017 Score=56.95 Aligned_cols=84 Identities=11% Similarity=0.037 Sum_probs=64.3
Q ss_pred HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (436)
Q Consensus 258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (436)
.+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|++|+++-+.. ..+...++.||...|+.++|
T Consensus 23 ~~A~~~~~~Al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 23 ENAIKFYSQAI--ELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp HHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHH--HhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHH
Confidence 34444454433 234443 4456788999999999999999999999885433 56788899999999999999
Q ss_pred HHHHHHHh-cCCCH
Q 013807 338 RIMYEKLQ-SHPNA 350 (436)
Q Consensus 338 iaLYkkL~-sHP~~ 350 (436)
+..|++.. .+|+.
T Consensus 94 ~~~~~~al~~~p~~ 107 (477)
T 1wao_1 94 LRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 99999974 57754
No 133
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.02 E-value=0.015 Score=52.35 Aligned_cols=90 Identities=12% Similarity=-0.010 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (436)
.+..+..+.++.|++-. ..+|.. ....+..+..++.+|++.+|+..|+++++.-|.. -++.+.|+.+|...
T Consensus 162 ~~~g~~~~A~~~l~~~~--~~~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----~~~~~~la~~l~~~ 232 (287)
T 3qou_A 162 IALNRSEDAEAVLXTIP--LQDQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAENPED----AALATQLALQLHQV 232 (287)
T ss_dssp HHTTCHHHHHHHHTTSC--GGGCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHhCc--hhhcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc----HHHHHHHHHHHHHc
Confidence 44556677777777543 444522 2346667777888888888999999988887654 45778889999999
Q ss_pred CChHHHHHHHHHHh-cCCCH
Q 013807 332 HRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 332 GR~~EAiaLYkkL~-sHP~~ 350 (436)
||.++|+..|+++. .+|+.
T Consensus 233 g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 233 GRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp TCHHHHHHHHHHHHHHCTTG
T ss_pred ccHHHHHHHHHHHHhccccc
Confidence 99999999998885 67764
No 134
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.02 E-value=0.018 Score=50.64 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
+..+..+.+..|++-.. ++|. .....+..|..++..|+|.+|+.+|+++++.-+. ...+...++.||...|
T Consensus 76 ~~g~~~~A~~~~~~al~--~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQ--QDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPD----NQTALMALAVSFTNES 146 (368)
T ss_dssp HTTCHHHHHHHHHHHHH--SCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHH--hCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcC
Confidence 33445555555554442 2222 2344455566666666666666666666665433 2345566666666677
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 013807 333 RPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 333 R~~EAiaLYkkL~-sHP~ 349 (436)
+.++|+.+|+++. .+|.
T Consensus 147 ~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPA 164 (368)
T ss_dssp CHHHHHHHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHHhCcC
Confidence 7777776666664 3443
No 135
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.02 E-value=0.02 Score=51.25 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh--HHHHHHHHHHHhc-CChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSL-HRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~-GR~~EAiaLYkkL~ 345 (436)
..+......|..+...|+|.+|+.+|++|+++.+......+ .+...++.+|... |+.++|+..|++..
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 34556677899999999999999999999998765444443 4556689999995 99999999999874
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.01 E-value=0.03 Score=49.69 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc---CccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.++.-....|..++..|+|.+|+.+|++|++.... ....-..+-..++.||-..|+.++|+..|++..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555677899999999999999999999976543 233345567789999999999999999998763
No 137
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.00 E-value=0.029 Score=55.56 Aligned_cols=68 Identities=15% Similarity=0.016 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
-..+...-..|..++..|+|.+|+++++++++. ++.....=|..-..|+..|...|+.+||+.+|++-
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 355555666789999999999999999998754 45555666888889999999999999999999875
No 138
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.99 E-value=0.0079 Score=46.35 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=43.5
Q ss_pred hCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 292 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 292 erGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
..|+|.+|+.+|++|++.- ....-...+.+.|+.||-..|+.++|+..|++.. .+|+-
T Consensus 2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3689999999999999862 1122346788999999999999999999999985 57764
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.97 E-value=0.018 Score=51.93 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
++..+..|..++..|+|.+|+.+|++|+..-+.. ..+...++.||...|+.++|+..|++.. .+|+-
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 3557889999999999999999999999987653 5677889999999999999999999975 57754
No 140
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.87 E-value=0.019 Score=49.14 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
..+..|..++..|+|.+|+.+|+++++.-+. ...+...++.||...|+.++|+..|++.. .+|+
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ----NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc----chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 4567799999999999999999999988654 46788889999999999999999999986 4664
No 141
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.85 E-value=0.039 Score=47.20 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
.+..+..|..++..|+|.+|+.+|+++++.-+. ...+.+.++.||...|+.++|+..|++.. .+|.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence 345788999999999999999999999987654 45677889999999999999999999985 5664
No 142
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.83 E-value=0.083 Score=47.54 Aligned_cols=68 Identities=10% Similarity=0.016 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch--hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..+...+..|..++..|+|.+|+.+|+++++..+...... ..+...++.+|-..|+.++|+..|++..
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4555677889999999999999999999998886533322 3477789999999999999999998874
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.79 E-value=0.024 Score=50.39 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHH-HHHHHHH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEA-RIMYEKL 344 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EA-iaLYkkL 344 (436)
...+..|..++..|+|.+|+.+|++|++...... .+-+.+-..++.||...|+.++| +..|++-
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5678889999999999999999999998864322 22377788899999999999999 6667653
No 144
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.79 E-value=0.05 Score=54.30 Aligned_cols=67 Identities=10% Similarity=-0.047 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
..+...-..|..+..+|+|.+|+++|++|++. ++....-=|..-..|+..|...|+.+||+.||++-
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34444555688999999999999999999765 34444444677788999999999999999999874
No 145
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.76 E-value=0.02 Score=48.39 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--CccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
...+...+..|..++..|+|.+|+.+|+++++..+. ....-..+...++.+|...|+.++|+..|++.
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344555666777777777777777777777665432 35566666777777777777777777777765
No 146
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.75 E-value=0.073 Score=45.84 Aligned_cols=65 Identities=18% Similarity=0.061 Sum_probs=47.3
Q ss_pred HHHHHHHHHHh----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHHH
Q 013807 282 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNALV 352 (436)
Q Consensus 282 ea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~eV 352 (436)
..+..|..++. .|++.+|+.+|++|++.- ...+...|+.+|.. .++.++|+..|++....-+...
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 112 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG 112 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccH
Confidence 44556777777 888888888888887651 45677778888888 8888888888888765544443
No 147
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.74 E-value=0.047 Score=49.20 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=25.1
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
..|..++..|++.+|+..|+++++.-+.. ..+...++.+|...|+.++|+.+|++.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHF----PDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC----HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444455555555554444433221 223344444444444444444444444
No 148
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.071 Score=48.87 Aligned_cols=79 Identities=14% Similarity=0.011 Sum_probs=63.5
Q ss_pred HHHHHHHHHHh---CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013807 282 KALKDGDSLMD---SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR 357 (436)
Q Consensus 282 ea~~~Gk~Ame---rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk 357 (436)
..+..|..++. .|+|.+|+.+|+++++.-+.. ..+.+.++.||...|+.++|+..|++.. .+|.-.-..++.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 45677888999 999999999999999876543 5678889999999999999999999985 688766555555
Q ss_pred HHHHHHH
Q 013807 358 QFMFSFQ 364 (436)
Q Consensus 358 rLlyiLE 364 (436)
.++...+
T Consensus 490 ~~~~~~~ 496 (514)
T 2gw1_A 490 TFAEAAK 496 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 149
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.70 E-value=0.037 Score=51.41 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=58.7
Q ss_pred HHHHHHHhC----------CchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 013807 285 KDGDSLMDS----------GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS 353 (436)
Q Consensus 285 ~~Gk~Amer----------GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr 353 (436)
..|..++.. |+|.+|+.+|+++++.-+.. ..+.+.++.||...|+.++|+..|++.. .+|...-.
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS----EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 345666666 99999999999999986543 3788999999999999999999999985 57776666
Q ss_pred HHHHHHHHHHHh
Q 013807 354 KRARQFMFSFQA 365 (436)
Q Consensus 354 KQAkrLlyiLEA 365 (436)
.++..+.-...+
T Consensus 499 ~~~~~~~~~~~~ 510 (537)
T 3fp2_A 499 LQATTFAEAAKI 510 (537)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHH
Confidence 665555444433
No 150
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.68 E-value=0.05 Score=49.60 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcCCcCC-cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc---chhHHHHHHHHHHHhc
Q 013807 256 RTRQLLAAYKKSVGLNVD-PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSL 331 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vd-p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~ 331 (436)
+..+.+..|++-..+--. +.....+...+..|..++..|+|.+|+.+|++|++....... .-+.+...++.||...
T Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 197 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL 197 (383)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence 344555556655543111 223346667788899999999999999999999988765532 2246777899999999
Q ss_pred CChHHHHHHHHHHh
Q 013807 332 HRPKEARIMYEKLQ 345 (436)
Q Consensus 332 GR~~EAiaLYkkL~ 345 (436)
|+.++|+..|++..
T Consensus 198 g~~~~A~~~~~~al 211 (383)
T 3ulq_A 198 KQYEDAISHFQKAY 211 (383)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998864
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.035 Score=50.56 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh-------------HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------LAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-------------eaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.+++|+.++..|+|.+|++.|.++++..+..+.... .+-.+|+.+|...|+.++|+.+|+++.
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777777788888888888887776655543321 345667777888888888888877763
No 152
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.66 E-value=0.063 Score=48.83 Aligned_cols=60 Identities=17% Similarity=-0.033 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 351 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 351 (436)
.+..|..++..|+|.+|+..|++ + -.-++.+.++.+|...||.++|+..|+++. .+|+.-
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~-----~----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 164 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ-----G----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT-----C----CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC-----C----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH
Confidence 67788999999999999999987 1 234677778999999999999999999985 577753
No 153
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.66 E-value=0.0067 Score=59.76 Aligned_cols=68 Identities=9% Similarity=-0.011 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
.++..+..|..++..|+|.+|+++|++|++.-+.. ..+...++.||...|+.++|+..|++.. .||.-
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 34455677899999999999999999999986544 6778889999999999999999999985 67753
No 154
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.61 E-value=0.024 Score=52.77 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
..+..|..++..|+|.+|+.+|++|+++-+.+ ..+.+.++.||..+|+.++|+..|++.. .+|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34667999999999999999999999886543 5678999999999999999999999985 4554
No 155
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.56 E-value=0.034 Score=56.36 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------GLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------GeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.++..++....+..+|+|.+|+++|+++++... ..|| ..+.-.|+.+|...|+.++|+.+|++.
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~--~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQE--PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT--TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455667777888899999999999999987642 2343 466677999999999999999988874
No 156
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.49 E-value=0.033 Score=54.37 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (436)
Q Consensus 258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (436)
.+.+..|++-. ..+|.. ....+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.++.||...|+.++|
T Consensus 6 ~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 6 PRELLQLRAAV--RHRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -----------------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHH
Confidence 34444554433 344443 2446778999999999999999999999986543 56788999999999999999
Q ss_pred HHHHHHHh-cCCCH
Q 013807 338 RIMYEKLQ-SHPNA 350 (436)
Q Consensus 338 iaLYkkL~-sHP~~ 350 (436)
+..|++.. .+|+-
T Consensus 77 ~~~~~~al~~~p~~ 90 (568)
T 2vsy_A 77 AVLLQQASDAAPEH 90 (568)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999985 57753
No 157
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.49 E-value=0.03 Score=49.45 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.+...+..|..++..|+|.+|+.+|++|++...... ..-..+...++.||...|+.++|+..|++..
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566778888889999999999999887765432 2225566778889999999999999888853
No 158
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.49 E-value=0.034 Score=50.17 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc--chhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~--LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
+......|..+.. |+|.+|+.+|++|++..+.... .-..+...++.+|...|+.++|+..|++..
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444556777777 9999999999999988765332 235667778999999999999999999875
No 159
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.48 E-value=0.033 Score=50.78 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc--cchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
..+...+..|..++..|+|.+|+++|++|++...... ..-+.+...++.||...|+.++|+..|++...
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455677789999999999999999999998875432 33356777899999999999999999998754
No 160
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.47 E-value=0.23 Score=50.33 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-------c
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-------S 346 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-------s 346 (436)
..+...-..|..+...|+|.+|+++|++|++. ++.....=+..-..||..|...|+.+||+.||++-. .
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45555666788999999999999999999765 344444447778889999999999999999998752 3
Q ss_pred CCCHHHHHHHHHHHHHHH-hhhhhhhcccCCCCcchHHHHHHhhcccccccCcc
Q 013807 347 HPNALVSKRARQFMFSFQ-AMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQE 399 (436)
Q Consensus 347 HP~~eVrKQAkrLlyiLE-Ap~llKv~~~~~~~t~Yd~Yf~~f~~~kt~y~~~e 399 (436)
.-|+.|.+.- .+|-..+ .+++. .+. -.-|+.==++..+++.++.-.|
T Consensus 429 ~~Hp~~~~~~-~~l~~~~~e~~~~--~~a---e~~~~~~~~~~~~~~~~~~~~~ 476 (490)
T 3n71_A 429 PSHPITKDLE-AMRMQTEMELRMF--RQN---EFMYHKMREAALNNQPMQVMAE 476 (490)
T ss_dssp TTSHHHHHHH-HHHHHHHHHHHHH--HHH---HHHHHHHHHHHHTC--------
T ss_pred CCChHHHHHH-HHHHHHHHHHHHH--HHH---HHHHHHHHHHHhcCCCCccccC
Confidence 4455666533 3443333 22222 111 0112333355667777776555
No 161
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.46 E-value=0.034 Score=50.93 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--CccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..+...+..|..++..|+|.+|+++|++|++.... ....-+.+...++.||...|+.++|+..|++..
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45566678899999999999999999999987643 233456778889999999999999999999874
No 162
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.42 E-value=0.045 Score=49.32 Aligned_cols=85 Identities=14% Similarity=0.213 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (436)
..+.+..|++-. .++|..-. ..+..|..++..|++.+|+..|+++++..+.. ..+...++.+|...|+.++
T Consensus 253 ~~~A~~~~~~al--~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 253 IDLAIDTYRRAI--ELQPHFPD---AYCNLANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHHHHHHH--HTCSSCHH---HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHH--hhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHH
Confidence 344455555443 33444322 35667888888889999999998888876543 4566778888888888888
Q ss_pred HHHHHHHHh-cCCCH
Q 013807 337 ARIMYEKLQ-SHPNA 350 (436)
Q Consensus 337 AiaLYkkL~-sHP~~ 350 (436)
|+.+|++.. .+|+-
T Consensus 324 A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 324 AVRLYRKALEVFPEF 338 (388)
T ss_dssp HHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHhcCCCc
Confidence 888888875 56653
No 163
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.34 E-value=0.09 Score=48.09 Aligned_cols=89 Identities=7% Similarity=-0.084 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhcCCcCC-cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCcc---chhHHHHHHHHHHHhcC
Q 013807 257 TRQLLAAYKKSVGLNVD-PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSLH 332 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vd-p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~G 332 (436)
..+.+..|++-..+--. +.....++..+..|..++..|+|..|+.+|++|++....... .-+.+...++.||...|
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~ 196 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK 196 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC
Confidence 44555556655443211 223456667788899999999999999999999998765433 23566678999999999
Q ss_pred ChHHHHHHHHHHh
Q 013807 333 RPKEARIMYEKLQ 345 (436)
Q Consensus 333 R~~EAiaLYkkL~ 345 (436)
+.++|+..|++..
T Consensus 197 ~~~~A~~~~~~al 209 (378)
T 3q15_A 197 HYDKALPHLEAAL 209 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998864
No 164
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.17 E-value=0.053 Score=54.12 Aligned_cols=63 Identities=13% Similarity=-0.108 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
..++.++.+-..|+|.+|+++|+++++... .....=..+--.|+.+|...|+.++|+.||++.
T Consensus 300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 455667777788999999999999987642 222222566667999999999999999999875
No 165
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.97 E-value=0.18 Score=43.32 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=52.9
Q ss_pred HHHHHHHHHHh----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013807 282 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL 351 (436)
Q Consensus 282 ea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e 351 (436)
..+..|..++. .|++.+|+.+|++|++.- ...+...|+.+|.. .++.++|+..|++....-+..
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD 147 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHH
Confidence 34455788888 999999999999998761 56888999999999 999999999999987554443
No 166
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.96 E-value=0.063 Score=55.05 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
..+..|..++..|+|.+|+..|++|++.-+.. .++...++.||...|+.++|+..|++.. ..|+
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 499 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG 499 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 35677888888888888888888888775544 4566777888888888888888888864 4553
No 167
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.91 E-value=0.11 Score=49.35 Aligned_cols=64 Identities=9% Similarity=-0.068 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
.+..|..++..|++.+|+.+|+++++.-+.. ..+...++.+|...|+.++|+.+|+++. .+|+-
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 4556888899999999999999999886543 4778889999999999999999999985 57754
No 168
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.90 E-value=0.023 Score=52.33 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=47.4
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccCccc--h---hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--H---GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L--G---GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..|...+..|+|++|+++|++|+++....... + -.+-..++.+|...|+.++|+..|++..
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 36899999999999999999999876432111 1 1233468999999999999999998863
No 169
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.66 E-value=0.13 Score=46.20 Aligned_cols=67 Identities=16% Similarity=0.003 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh--HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.+...+..|..++..|+|.+|+.+|++|++..+......+ .+...++.+|-..|+.++|+.+|++..
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 120 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445667799999999999999999999988765444433 345679999999999999999999874
No 170
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.64 E-value=0.054 Score=52.38 Aligned_cols=85 Identities=8% Similarity=-0.049 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807 257 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (436)
Q Consensus 257 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (436)
..+.|..|++-. .++|+.-. .-+..|..++..|+|.+|+..|++|+++-+.+. .+-..++.||...|+.++
T Consensus 148 ~~eAl~~~~~al--~l~P~~~~---a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~----~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 148 LHEEMNYITAII--EEQPKNYQ---VWHHRRVLVEWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcCChHH
Confidence 344444444333 33444322 245567778888888888888888887766543 455678888899999999
Q ss_pred HHHHHHHHh-cCCCH
Q 013807 337 ARIMYEKLQ-SHPNA 350 (436)
Q Consensus 337 AiaLYkkL~-sHP~~ 350 (436)
|+..|+++. .+|+-
T Consensus 219 Al~~~~~al~l~P~~ 233 (382)
T 2h6f_A 219 ELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999998875 56653
No 171
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.51 E-value=0.11 Score=46.82 Aligned_cols=68 Identities=15% Similarity=0.033 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCc----cchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S----~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
..+...+..|..++..|+|.+|+.+|+++++...... .....+...++.+|-..|+.++|+.+|++..
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444566789999999999999999999998875322 2345667779999999999999999999864
No 172
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=94.47 E-value=0.16 Score=43.53 Aligned_cols=65 Identities=17% Similarity=0.061 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC----ChHHHHHHHHHHhcCCCHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH----RPKEARIMYEKLQSHPNAL 351 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G----R~~EAiaLYkkL~sHP~~e 351 (436)
.+..+..|..++..|++.+|+.+|++|.+. =...+...|+++|.. + +.++|+..|++....-++.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~ 86 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKS 86 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHH
Confidence 345667788888888888888888888764 135777888888887 6 7888888888876444443
No 173
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.43 E-value=0.066 Score=54.88 Aligned_cols=83 Identities=7% Similarity=0.015 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 331 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 331 (436)
.+..+..+.++.|++-. .++|.. .+..+..|..++..|+|.+|+..|++|+++-+... .+.+.++.||...
T Consensus 444 ~~~g~~~~A~~~~~~al--~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~~~~~ 514 (681)
T 2pzi_A 444 LDLGDVAKATRKLDDLA--ERVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL----APKLALAATAELA 514 (681)
T ss_dssp HHHTCHHHHHHHHHHHH--HHHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHh--ccCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHc
Confidence 34456677777777655 334443 33466778888888888888888888877766543 3334444444444
Q ss_pred CChHHHHHHHHHH
Q 013807 332 HRPKEARIMYEKL 344 (436)
Q Consensus 332 GR~~EAiaLYkkL 344 (436)
|+.++ +..|++.
T Consensus 515 g~~~~-~~~~~~a 526 (681)
T 2pzi_A 515 GNTDE-HKFYQTV 526 (681)
T ss_dssp TCCCT-TCHHHHH
T ss_pred CChHH-HHHHHHH
Confidence 44444 4444443
No 174
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.82 E-value=0.069 Score=51.24 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 348 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 348 (436)
..|-.|..++..|+|.+|+.+|+++.... ...+...+.++|.+||..+|+.++|+..|++...-|
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 56889999999999999999999765433 112456899999999999999999999999996433
No 175
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.69 E-value=0.35 Score=43.30 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807 258 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (436)
Q Consensus 258 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (436)
.+.+..|++-+-. ++|.... --+..|..+...|++.+|...|++|++.-+.... .+-+.++.++...|+.++|
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNML---LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHH
Confidence 4455555554420 3454322 2445677888899999999999999986543322 2677788889999999999
Q ss_pred HHHHHHHhc
Q 013807 338 RIMYEKLQS 346 (436)
Q Consensus 338 iaLYkkL~s 346 (436)
+.+|++...
T Consensus 154 ~~~~~~a~~ 162 (308)
T 2ond_A 154 RMIFKKARE 162 (308)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999864
No 176
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=93.57 E-value=0.2 Score=48.38 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCc-hhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 282 KALKDGDSLMDSGK-LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 282 ea~~~Gk~AmerGk-Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
.-+..|..++..|+ |.+|+..|++|+.+-+.. -.+-..++.||..+|+.++|+..|++.. ..|.-
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 34556899999997 999999999999887654 3456678999999999999999999985 45543
No 177
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.49 E-value=1.1 Score=39.99 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=43.7
Q ss_pred CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 293 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 293 rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
.|++.+|+..|++|++..+.. ..+-+.++..+...|+.++|+++|++...
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 699999999999999987753 45667778889999999999999999976
No 178
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.20 E-value=0.26 Score=46.75 Aligned_cols=59 Identities=7% Similarity=-0.011 Sum_probs=32.6
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhccc---CccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.|..++..|++.+|+.+|+++++..+. .......+...++.+|-..|+.++|+.+|+++
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 355555666666666666666555321 11112345555666666666666666666665
No 179
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.05 E-value=0.49 Score=38.41 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHh----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCH
Q 013807 281 EKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNA 350 (436)
Q Consensus 281 eea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~ 350 (436)
...+..|..++. .+++.+|+.+|++|.+. =...++.+|+++|.. ..+.++|+..|++-..+-++
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 344556666666 67777777777777654 135677777777777 77777777777776544443
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.99 E-value=0.23 Score=45.22 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcCC------------cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc
Q 013807 249 ARAAKEERTRQLLAAYKKSVGLNVD------------PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL 316 (436)
Q Consensus 249 EkaaR~~rtke~LaaYrk~~Gl~Vd------------p~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L 316 (436)
++..+..+..+.+..|.+-.-++-+ .......+..+..|..+++.|+|.+|+++|+.++.....-..-
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456667788888888764422221 1223334446678999999999999999999887655432211
Q ss_pred ----------h--------------------------------hHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 317 ----------H--------------------------------GLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 317 ----------G--------------------------------GeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
| ..+.+.|+.+|...|+.++|+.+++++..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 0 12344577778888888888888888873
No 181
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.46 E-value=0.67 Score=45.02 Aligned_cols=129 Identities=9% Similarity=0.085 Sum_probs=85.4
Q ss_pred CCccccCCCcccCCCCccCcHHHH---HH--------------HHHHHHHHHHHHHhhcCCcCC-c----chHHHHH---
Q 013807 227 NISKTFGGGRTIRPGDVLETAEAR---AA--------------KEERTRQLLAAYKKSVGLNVD-P----KLKSECE--- 281 (436)
Q Consensus 227 NISkayGGGR~IrpGe~lEteEEk---aa--------------R~~rtke~LaaYrk~~Gl~Vd-p----~~k~e~e--- 281 (436)
.|--..|+|..+.+.. .+.+=.. .. ..+...+.|+-||...=-++. . ......+
T Consensus 92 ~i~~~~~~GY~l~~~~-~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~ 170 (388)
T 2ff4_A 92 VVLAAAPPGYRLSIPD-NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDK 170 (388)
T ss_dssp HHEEECSSEEEECCCG-GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHH
T ss_pred eEEEEECCEEEEcCCC-ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHH
Confidence 4556778898887653 2222211 11 123355667777655422331 1 1111222
Q ss_pred --HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc--------CCCHH
Q 013807 282 --KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--------HPNAL 351 (436)
Q Consensus 282 --ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--------HP~~e 351 (436)
...+....++..|++.+|+..++.++..-|..-+ +..+|..||-..||+.+|+..|+++.. -|.++
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~----~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 2223467788999999999999999888776654 456778899999999999999999864 58999
Q ss_pred HHHHHHHHH
Q 013807 352 VSKRARQFM 360 (436)
Q Consensus 352 VrKQAkrLl 360 (436)
++.--++|+
T Consensus 247 l~~l~~~il 255 (388)
T 2ff4_A 247 LRALNERIL 255 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777765
No 182
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=92.21 E-value=2 Score=36.69 Aligned_cols=70 Identities=7% Similarity=-0.090 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHh----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc-C-----ChHHHHHHHHHHhcCCC
Q 013807 280 CEKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-H-----RPKEARIMYEKLQSHPN 349 (436)
Q Consensus 280 ~eea~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-G-----R~~EAiaLYkkL~sHP~ 349 (436)
....+..|..++. .+++.+|+.+|++|.++ +. ...+..+|+++|..- | +.++|+..|++-..+-+
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~----~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR----TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC----TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC----CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4556777888888 78999999999999876 22 245889999999754 3 89999999999875555
Q ss_pred HHHHH
Q 013807 350 ALVSK 354 (436)
Q Consensus 350 ~eVrK 354 (436)
.+-..
T Consensus 200 ~~A~~ 204 (212)
T 3rjv_A 200 DTGCE 204 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=92.20 E-value=0.45 Score=33.46 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
+..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.+|...|
T Consensus 24 ~~~~A~~~~~~a~--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 24 DYDEAIEYYQKAL--ELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Confidence 4445555555544 233432 2346788999999999999999999999986543 456677777776554
No 184
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.18 E-value=0.7 Score=36.35 Aligned_cols=64 Identities=16% Similarity=-0.005 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhCCc---hhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013807 282 KALKDGDSLMDSGK---LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 282 ea~~~Gk~AmerGk---Yr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 349 (436)
-.+..|..+|-.+. ..+|..+|++|+..=+.+ ..+.+.|+..+-..|+.++||..|+++. ..|.
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35566777764443 899999999999977544 5678889999999999999999999985 5666
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.18 E-value=0.27 Score=37.17 Aligned_cols=50 Identities=8% Similarity=-0.084 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013807 297 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 297 r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 350 (436)
.+|+..|++++..-+.. ..+.+.++.+|...|+.++|+..|++.. .+|..
T Consensus 2 ~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp CCHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 57899999999876543 4678889999999999999999999985 56653
No 186
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.80 E-value=0.17 Score=37.00 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 332 (436)
+..+..+.+..|++-+ .++|.... ...+..|..++..|+|.+|+.+|++|+.+-+...... .+ +
T Consensus 12 ~~~~~~~A~~~~~~al--~~~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~--------~ 75 (99)
T 2kc7_A 12 NQGDIENALQALEEFL--QTEPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ----AR--------K 75 (99)
T ss_dssp HHTCHHHHHHHHHHHH--HHCSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH----HH--------H
T ss_pred HcCCHHHHHHHHHHHH--HHCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH----HH--------H
Confidence 3445556666666544 34454322 1467889999999999999999999999887665432 11 5
Q ss_pred ChHHHHHHHHHHh
Q 013807 333 RPKEARIMYEKLQ 345 (436)
Q Consensus 333 R~~EAiaLYkkL~ 345 (436)
+..+|+..|+++.
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 6677777777653
No 187
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=91.63 E-value=0.54 Score=43.23 Aligned_cols=71 Identities=11% Similarity=-0.030 Sum_probs=45.8
Q ss_pred HHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 013807 288 DSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFS 362 (436)
Q Consensus 288 k~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyi 362 (436)
......|++.+|+.+|++|+..-+.. ..+...++.+|...|+.++|+..|++.. .||+-..--...-++|.
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HCC------CHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 33445567777888888777765433 4566788999999999999999999974 78875443333334443
No 188
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.42 E-value=0.88 Score=35.76 Aligned_cols=33 Identities=9% Similarity=-0.086 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL 316 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L 316 (436)
.+-.|..+|..|+|++|+.+|+++++..+. +.-
T Consensus 46 ~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 46 LSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 455699999999999999999999998877 433
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.73 E-value=3.7 Score=33.14 Aligned_cols=59 Identities=8% Similarity=-0.042 Sum_probs=50.6
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCH
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNA 350 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~ 350 (436)
.|..++..+.+.+|+.+|++|.+. =...++..|+++|.. ..+.++|+..|++-...-++
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 93 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQ 93 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCH
Confidence 788888888899999999999876 246899999999998 89999999999998655443
No 190
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=89.59 E-value=2.2 Score=41.10 Aligned_cols=58 Identities=7% Similarity=0.060 Sum_probs=47.1
Q ss_pred HhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013807 291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 352 (436)
Q Consensus 291 merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 352 (436)
+..|++.+|...||+|++..|.. ..+-+.++..+...|+.++|+.+|++.. .||+.++
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~----~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~l 81 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL 81 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH
Confidence 67899999999999999988654 3344446777778899999999999995 6898664
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=88.75 E-value=0.92 Score=43.67 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=40.1
Q ss_pred CCchh-------hhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 293 SGKLK-------EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 293 rGkYr-------~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
.|++. +|+..|++|++.+.++ ...+-+.++..++..|+.++|+.+|+++..
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 68887 8999999999743332 245666788889999999999999999864
No 192
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=87.16 E-value=3.6 Score=39.13 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=24.0
Q ss_pred CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhc
Q 013807 293 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQS 346 (436)
Q Consensus 293 rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~s 346 (436)
.+++.+|+.+|++|.+.- .-.+..+|+.+|.. .++.++|+.+|++...
T Consensus 200 ~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 455555555555554421 12445555555554 5555555555555543
No 193
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=87.04 E-value=3.7 Score=39.06 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=47.5
Q ss_pred HHHHHHHHHh----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013807 283 ALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL 351 (436)
Q Consensus 283 a~~~Gk~Ame----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e 351 (436)
.+..|..++. .+++.+|+.+|++|.+. =...++..|+.+|.. .++.++|+..|++....-+..
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 148 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDS 148 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 4455777777 88888899988888764 135778888888888 788889999888886544443
No 194
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=85.62 E-value=3.4 Score=40.16 Aligned_cols=65 Identities=9% Similarity=-0.058 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (436)
..+-.|..++..|+|.+|+..|+++++.-+ +.-.=++.+-++.+|-..||.+.|+.++++++ .+|
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 356779999999999999999999876544 23455788888999999999999999999996 577
No 195
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=84.70 E-value=1.3 Score=45.38 Aligned_cols=64 Identities=13% Similarity=-0.033 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch---------------------hHHHHHHHHHHHhcCChHHHHHH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------------GLAALQWSICQDSLHRPKEARIM 340 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG---------------------GeaqLwLAiAydA~GR~~EAiaL 340 (436)
.-...+..++.-|+|.+||+.|++|..--.-+.-+. -+-...++-+|+..|+++|||.+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 345668889999999999999999832111011111 11122456789999999999999
Q ss_pred HHHHh
Q 013807 341 YEKLQ 345 (436)
Q Consensus 341 YkkL~ 345 (436)
+++--
T Consensus 230 Le~aL 234 (449)
T 1b89_A 230 LEAAL 234 (449)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98863
No 196
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=84.02 E-value=5.5 Score=35.30 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCC---chhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013807 281 EKALKDGDSLMDSG---KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA 356 (436)
Q Consensus 281 eea~~~Gk~AmerG---kYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA 356 (436)
+..|+-|-.+.... .+++++.+||.++..-.+ .-.=+.-..||++|=.+|+.++|+..+++|- ..|+- .||
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n---~QA 107 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQA 107 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---HHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHH
Confidence 45677888888877 888999999999886511 1345788999999999999999999999994 78854 577
Q ss_pred HHHHHHHH
Q 013807 357 RQFMFSFQ 364 (436)
Q Consensus 357 krLlyiLE 364 (436)
+.|..-++
T Consensus 108 ~~Lk~~ie 115 (152)
T 1pc2_A 108 KELERLID 115 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766665
No 197
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.83 E-value=6.5 Score=38.13 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchh-------------------HHHHHHHHHHHhcCChHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------------LAALQWSICQDSLHRPKEAR 338 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG-------------------eaqLwLAiAydA~GR~~EAi 338 (436)
.+++..+..|..+...|...+|+..|+.|+.+... .-|.| .+...++-++-+.|++.+|+
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG-~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRG-PVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-STTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 67889999999999999999999999999988732 22322 23345667788999999999
Q ss_pred HHHHHHh-cCCCHHH
Q 013807 339 IMYEKLQ-SHPNALV 352 (436)
Q Consensus 339 aLYkkL~-sHP~~eV 352 (436)
..+++|. .||..|-
T Consensus 192 ~~l~~~~~~~P~~E~ 206 (388)
T 2ff4_A 192 AELEALTFEHPYREP 206 (388)
T ss_dssp HHHHHHHHHSTTCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 8888885 7998773
No 198
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=83.81 E-value=2.5 Score=42.41 Aligned_cols=68 Identities=18% Similarity=0.063 Sum_probs=53.8
Q ss_pred HHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHHH
Q 013807 289 SLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF 361 (436)
Q Consensus 289 ~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly 361 (436)
.++-.|++.+|+.++++|+.+= ++ =.+-+.++.+|...|+.++|++.|++- .-.|...+-.-++.|.|
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~Ln--~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDLE--MS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred HHHhCCCHHHHHHHHHHHHhcC--CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence 3455799999999999999994 33 234467899999999999999999776 57999887666665554
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=83.23 E-value=1.9 Score=32.49 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 317 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG 317 (436)
+..+.+..|++-+ .++|..-. ..+..|..++..|+|.+|+..|++|+++.+.....+
T Consensus 22 ~~~~A~~~~~~al--~~~p~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 22 NASRALALFEELV--ETDPDYVG---TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp CHHHHHHHHHHHH--HHSTTCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHHH--HhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 3444555555444 33444322 467789999999999999999999998866554444
No 200
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=81.60 E-value=1.4 Score=45.11 Aligned_cols=52 Identities=17% Similarity=0.023 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
.-...|..+++.|+|.+|+.+|.++ .-..-||.||-.+|+.++|+..|++..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 4567799999999999999999987 244557899999999999999999993
No 201
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=80.67 E-value=4.3 Score=36.58 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC----ccchhHHH-HHHHHHHHhcCChHHHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAA-LQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~----S~LGGeaq-LwLAiAydA~GR~~EAiaLYkkL 344 (436)
..-..+|..|..+|+.|+|-+|=+.||.+-...+.. .-+.|.+| +--|+-+-..|+..=|..|+++-
T Consensus 30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345568999999999999999999999997666444 46889999 99999998999999999999864
No 202
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=79.37 E-value=2.4 Score=34.69 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhccc--CccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.|..|..+|+.|+|-+|=+.||.+-...+. +.-+.|.+|+--|.-+-..|+. |..|+++-
T Consensus 4 ~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a 65 (94)
T 2cwy_A 4 DWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKA 65 (94)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHH
Confidence 478899999999999999999999766632 3458899998888777677777 88887754
No 203
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=77.34 E-value=4.7 Score=47.46 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC---ccch-------------
Q 013807 254 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK---SELH------------- 317 (436)
Q Consensus 254 ~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~---S~LG------------- 317 (436)
.-+.++.+.+|.+. + -...-++.|..+...|+|.+|+++|+.|....... |.+|
T Consensus 1118 ~G~~kEAIdsYiKA-------d---D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA-------D---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred CCCHHHHHHHHHhc-------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHH
Confidence 34566667777542 1 12234557888999999999999998887665221 1111
Q ss_pred -------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 318 -------GLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 318 -------GeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
-.....++.+|+..|+.++|+.+|.+.
T Consensus 1188 ~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1188 EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 112345788888888888888888885
No 204
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=77.32 E-value=4.5 Score=39.00 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=39.5
Q ss_pred HHHHHHH-H--HhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC-----ChHHHHHHHHHHh
Q 013807 283 ALKDGDS-L--MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-----RPKEARIMYEKLQ 345 (436)
Q Consensus 283 a~~~Gk~-A--merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-----R~~EAiaLYkkL~ 345 (436)
.+..|.. + ...|++.+|+.+|++|.+.= ...++.+|+.+|. .| +.++|+..|++-.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 3444554 3 46778888888888877431 4677788888887 66 7888888888777
No 205
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=76.24 E-value=5.9 Score=33.82 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=39.6
Q ss_pred HHHHHhhcCCcCCcc---hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh
Q 013807 261 LAAYKKSVGLNVDPK---LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 309 (436)
Q Consensus 261 LaaYrk~~Gl~Vdp~---~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~ 309 (436)
.+.|-++-||.+..- .+..++..+..|+.+|.-|.|.+|+.+||+|..+
T Consensus 31 F~~YV~kn~Lkel~~~ll~e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 31 FENYVKKEGLKIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhHHHHhhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 345667778877654 2366788999999999999999999999999754
No 206
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=75.41 E-value=8.1 Score=37.51 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=56.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchh-hhhhHHHHHHhhcccCccchhHHHHH
Q 013807 245 ETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLK-EALPFYEKVMNKMVFKSELHGLAALQ 323 (436)
Q Consensus 245 EteEEkaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr-~AV~~lEkA~~~v~~~S~LGGeaqLw 323 (436)
.|+|+.+++..+.++++++|+.-+ +.-...+..|.|. +|+.++++++..-|-... |=..
T Consensus 10 ~~~~~~~~~~~~~~~ki~~y~~~~----------------~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~yt----aWn~ 69 (331)
T 3dss_A 10 TSEEQAEAKRLEREQKLKLYQSAT----------------QAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNC 69 (331)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHH----HHHH
T ss_pred CcHhhHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHH
Confidence 477778888888889999998322 2233345678888 799999999987765432 2222
Q ss_pred HHHHHHhcCC----------hHHHHHHHHHHh-cCCC
Q 013807 324 WSICQDSLHR----------PKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 324 LAiAydA~GR----------~~EAiaLYkkL~-sHP~ 349 (436)
-..+++++++ .++++.+|.++. .||.
T Consensus 70 Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 70 RREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 3345555555 589999999884 6773
No 207
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.10 E-value=7.1 Score=35.50 Aligned_cols=61 Identities=5% Similarity=-0.104 Sum_probs=52.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCc-----cchhHHHHHHHHHHHhcCChHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----ELHGLAALQWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S-----~LGGeaqLwLAiAydA~GR~~EAiaLYkk 343 (436)
.++..+.+++.|.|+.|+.....++.....+- .+.-++..|+|.+|=.-+.+..|...|++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 57889999999999999999999877764433 34567899999999999999999999998
No 208
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.83 E-value=5.1 Score=42.16 Aligned_cols=74 Identities=8% Similarity=0.035 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 013807 284 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSF 363 (436)
Q Consensus 284 ~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiL 363 (436)
...+ .++..|++..|..+|+.... ...--...+.|++-++++.|+.++|..+|++|..+.+ -|++
T Consensus 290 ~~~r-~Alr~~d~~~a~~~~~~l~~----~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~----------fYg~ 354 (618)
T 1qsa_A 290 RRVR-MALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRG----------FYPM 354 (618)
T ss_dssp HHHH-HHHHHTCHHHHHHHHHHSCT----TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS----------HHHH
T ss_pred HHHH-HHHHCCCHHHHHHHHHHccc----cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----------hHHH
Confidence 3344 46778999999998866333 2233578899999999999999999999999986532 4888
Q ss_pred Hhhhhhhhc
Q 013807 364 QAMEMMKVR 372 (436)
Q Consensus 364 EAp~llKv~ 372 (436)
=|.+.+...
T Consensus 355 lAa~~Lg~~ 363 (618)
T 1qsa_A 355 VAAQRIGEE 363 (618)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 888777644
No 209
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=74.51 E-value=18 Score=34.79 Aligned_cols=61 Identities=11% Similarity=-0.046 Sum_probs=46.7
Q ss_pred HHHHHHHHhC----CchhhhhhHHHHHHhhcccCccchhHHHHHHHHH-H--HhcCChHHHHHHHHHHhcCCCHH
Q 013807 284 LKDGDSLMDS----GKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC-Q--DSLHRPKEARIMYEKLQSHPNAL 351 (436)
Q Consensus 284 ~~~Gk~Amer----GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiA-y--dA~GR~~EAiaLYkkL~sHP~~e 351 (436)
+..|..+... +++.+|+.+|++|. + =...+...|+.+ | ...++.++|+..|++....-++.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~ 284 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---P----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPR 284 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---G----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---C----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 4556555433 68999999999987 1 235788999998 6 67999999999999987555544
No 210
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.37 E-value=9.6 Score=33.21 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 357 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 357 (436)
++|-.++. -..+|+||+|.+|+.+++... --.+.-|+|.|-=.+|-..++-.---.|.+.-.++...=|.
T Consensus 39 ~E~v~lIR-~sSLmNrG~Yq~Al~l~~~~c---------~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p~~q~Fa~ 108 (116)
T 2p58_C 39 EEAVQLIR-LSSLMNRGDYASALQQGNKLA---------YPDLEPWLALCEYRLGLGSALESRLNRLARSQDPRIQTFVN 108 (116)
T ss_dssp HHHHHHHH-HHHHHHTTCHHHHHHHHTTSC---------CGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHH-HHHHHcchhHHHHHHhcCCCC---------CchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55555554 568999999999999888632 33456799999999999888887777888888887766655
Q ss_pred HHH
Q 013807 358 QFM 360 (436)
Q Consensus 358 rLl 360 (436)
-|+
T Consensus 109 g~r 111 (116)
T 2p58_C 109 GMR 111 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 211
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.08 E-value=9.4 Score=33.22 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 357 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 357 (436)
++|-.++. -..+|+||+|.+|+.+++... --.+.-|+|.|-=.+|-..++-.---.|.+.-.++...=|.
T Consensus 38 ~E~v~lIR-~sSLmNrG~Yq~Al~l~~~~c---------~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p~~q~Fa~ 107 (115)
T 2uwj_G 38 DEAARLIR-ISSLANQGRYQEALAFAHGNP---------WPALEPWFALCEWHLGLGAALDRRLAGLGGSSDPALADFAA 107 (115)
T ss_dssp HHHHHHHH-HHHHHHTTCHHHHHGGGTTCC---------CGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHH-HHHHHcchhHHHHHHhcCCCC---------CchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55555554 568999999999999877622 33456799999999999888877777788888887766555
Q ss_pred HHH
Q 013807 358 QFM 360 (436)
Q Consensus 358 rLl 360 (436)
-|+
T Consensus 108 g~r 110 (115)
T 2uwj_G 108 GMR 110 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=69.79 E-value=2.8 Score=37.22 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=41.9
Q ss_pred CchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCCh----------HHHHHHHHHHh-cCCCH
Q 013807 294 GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP----------KEARIMYEKLQ-SHPNA 350 (436)
Q Consensus 294 GkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~----------~EAiaLYkkL~-sHP~~ 350 (436)
++|.+|++.|++|+++-|.. .++.++|..||-..++. ++||..|++.. --|+.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~----aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLD----ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence 56889999999999988764 45677788888888775 59999999975 56653
No 213
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=68.66 E-value=10 Score=36.75 Aligned_cols=65 Identities=12% Similarity=-0.010 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHH--hCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013807 279 ECEKALKDGDSLM--DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 348 (436)
Q Consensus 279 e~eea~~~Gk~Am--erGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 348 (436)
.....+.++...+ +.++|++|+..|+.+.+..+.. ....+.|. |+...|+.+||....++|. .||
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~----~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW----KTQLGLLN-LHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH----HHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc----ccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcc
Confidence 3334455563344 4449999999999987766520 11234444 9999999999999999875 454
No 214
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=67.42 E-value=7.6 Score=45.81 Aligned_cols=51 Identities=18% Similarity=0.023 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 282 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
..+..|+.+++.|+|.+|+.+|.+|- --.-++.||.-+|+.++|+..|++-
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~------------ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh------------HHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 45678999999999999999999972 4445899999999999999999876
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=62.72 E-value=13 Score=39.18 Aligned_cols=56 Identities=5% Similarity=-0.082 Sum_probs=45.6
Q ss_pred HHHHHhCCchhhhh-hHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 287 GDSLMDSGKLKEAL-PFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 287 Gk~AmerGkYr~AV-~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
++-....|...+|+ ..|+.|+..+|.. -.+-+.+|..++..|+.++|..+|+++..
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~P~s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55566788999998 9999999988753 13344578889999999999999999974
No 216
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=60.58 E-value=27 Score=37.38 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=40.4
Q ss_pred HHHHHHHHhhc--CCcCCcchHHHHHHHHHHHHHH--HhCCchhhhhhHHHHHHhhcccC
Q 013807 258 RQLLAAYKKSV--GLNVDPKLKSECEKALKDGDSL--MDSGKLKEALPFYEKVMNKMVFK 313 (436)
Q Consensus 258 ke~LaaYrk~~--Gl~Vdp~~k~e~eea~~~Gk~A--merGkYr~AV~~lEkA~~~v~~~ 313 (436)
++.+..|+..- -..|+++.++.|...++..... +..|+|.+|++.+++ +..+|..
T Consensus 512 ~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 512 RRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 34445565432 2267888899999888876655 999999999999998 6677766
No 217
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=59.86 E-value=21 Score=30.66 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc-----cCccchhHHHHHHHHHHHhcCC
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV-----FKSELHGLAALQWSICQDSLHR 333 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~-----~~S~LGGeaqLwLAiAydA~GR 333 (436)
+.+.+-..+..++.+|++|++.+.-.++-+|.+.+. .+-+-||++.-.|.--|+-+.|
T Consensus 32 Lydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~ 94 (131)
T 3iqc_A 32 LYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIK 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHH
Confidence 347788899999999999999999999999987653 3345689999999988886543
No 218
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=59.47 E-value=28 Score=33.04 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhCCchh-hhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcC--ChHHHHHHHHHHh-cCCCHHHH
Q 013807 278 SECEKALKDGDSLMDSGKLK-EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH--RPKEARIMYEKLQ-SHPNALVS 353 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr-~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G--R~~EAiaLYkkL~-sHP~~eVr 353 (436)
++..+++..-...+..|.|. +|+..+++|+.+-|-.. .+=..-..++.++| +.++|+.+|.++. .||.--.-
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~----taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a 105 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITELGINELASHY----TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI 105 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHH----HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence 45556777777788888885 89999999998886653 23344677889999 9999999999985 67764433
No 219
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=58.40 E-value=20 Score=30.89 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhCCch-hhh---hhHHHHHHhhc-----ccCccchhHHHHHHHHHHHhcC
Q 013807 277 KSECEKALKDGDSLMDSGKL-KEA---LPFYEKVMNKM-----VFKSELHGLAALQWSICQDSLH 332 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkY-r~A---V~~lEkA~~~v-----~~~S~LGGeaqLwLAiAydA~G 332 (436)
.+.+-..+..++.+|++|++ .+. -.++-+|.+.+ ..+-+-||++.-.|.--|+-+.
T Consensus 26 ydgai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~LY~y~~ 90 (130)
T 1orj_A 26 YDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIIL 90 (130)
T ss_dssp HHHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHH
Confidence 36778899999999999999 888 88888887766 4455678999999998888543
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=55.66 E-value=9.5 Score=37.81 Aligned_cols=61 Identities=15% Similarity=-0.019 Sum_probs=39.3
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhh-----cccC-------ccchhHHHHH------HHHHHHhcCChHHHHHHHHHHhc
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNK-----MVFK-------SELHGLAALQ------WSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~-----v~~~-------S~LGGeaqLw------LAiAydA~GR~~EAiaLYkkL~s 346 (436)
+.|+.++..|++..|...|.++-+. +-.. .++ +++.+. -..||-.+|+.++|+.||.++.+
T Consensus 686 ~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~-~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTL-AKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHH-HHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4599999999999999999986221 1000 011 111111 23466678999999999988754
No 221
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=53.61 E-value=14 Score=29.48 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 317 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG 317 (436)
.-+-+..+.|..++.+|.+.+|+.+|-+|+.-++....|=
T Consensus 15 ~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 15 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4466788999999999999999999999998887776553
No 222
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=52.36 E-value=1.5e+02 Score=28.01 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=37.8
Q ss_pred HHHHHHhCC--chhhhhhHHHHHHhhcccCccchhHHHHHHHHHH----Hhc---CChHHHHHHHHHHh-cCC
Q 013807 286 DGDSLMDSG--KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ----DSL---HRPKEARIMYEKLQ-SHP 348 (436)
Q Consensus 286 ~Gk~AmerG--kYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAy----dA~---GR~~EAiaLYkkL~-sHP 348 (436)
.|..+..-| .|.+++.++++++..-|-...+=- .-..++ +.+ ++.++++.+|.++. .||
T Consensus 73 R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~----~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p 141 (306)
T 3dra_A 73 RFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWN----YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP 141 (306)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHH----HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHH----HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC
Confidence 377788888 999999999999886655432210 011122 333 67777777777763 555
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=50.43 E-value=16 Score=28.17 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccc
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL 316 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~L 316 (436)
.+..|..++..|++..|+.++++|+.+-|.....
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3677999999999999999999999988776544
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=49.72 E-value=58 Score=28.07 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCCchhh---hhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHH
Q 013807 282 KALKDGDSLMDSGKLKE---ALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRAR 357 (436)
Q Consensus 282 ea~~~Gk~AmerGkYr~---AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAk 357 (436)
..|.-+-.+.....-.+ +|.+||..+..-.+ .---+.-..||++|=.+|+.++|+..|+.| +.+|+- .||.
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n---~QA~ 111 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQAK 111 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC---HHHH
Confidence 34555666666665544 99999997775311 123477899999999999999999999999 578864 5788
Q ss_pred HHHHHHH
Q 013807 358 QFMFSFQ 364 (436)
Q Consensus 358 rLlyiLE 364 (436)
.|..-.+
T Consensus 112 ~Lk~~i~ 118 (126)
T 1nzn_A 112 ELERLID 118 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877665
No 225
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=49.61 E-value=8 Score=39.41 Aligned_cols=61 Identities=11% Similarity=-0.010 Sum_probs=43.5
Q ss_pred HHHHHHHhCCchh-hhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCC----------hHHHHHHHHHHh-cCCC
Q 013807 285 KDGDSLMDSGKLK-EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR----------PKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 285 ~~Gk~AmerGkYr-~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR----------~~EAiaLYkkL~-sHP~ 349 (436)
..-...+..|.|. +|+..+++|+..-|-.. .+-..-..|+..+|+ .++|+..|.++. .||.
T Consensus 33 ~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~----taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK 105 (567)
T 1dce_A 33 QAVFQKRQAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 105 (567)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 3334455667765 66999999998876553 223335678888888 899999999985 6774
No 226
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=47.50 E-value=16 Score=30.53 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 317 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG 317 (436)
.-+-+..+.|..++.+|.+..|+.||-+|+..++....|=
T Consensus 18 ~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 18 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4466788999999999999999999999988887766554
No 227
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=47.21 E-value=1.1e+02 Score=31.21 Aligned_cols=57 Identities=11% Similarity=0.015 Sum_probs=42.7
Q ss_pred HHHHHhCCc----------hhhhhhHHHHHHhhcccCccchhHHHHH--HHHHHHhcC--ChHHHHHHHHHHh-cCCC
Q 013807 287 GDSLMDSGK----------LKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSLH--RPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 287 Gk~AmerGk----------Yr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~G--R~~EAiaLYkkL~-sHP~ 349 (436)
|..+..-|+ |.+++.++++|+..=+-+. +.| -..+++.+| +.++|++.|.++. .||.
T Consensus 70 ~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y------~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY------GTWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 566666666 9999999999987655432 334 466788899 6699999999984 6764
No 228
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=47.12 E-value=26 Score=30.70 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCcCCcc-----hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch------hHHHHHHHHHH
Q 013807 260 LLAAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------GLAALQWSICQ 328 (436)
Q Consensus 260 ~LaaYrk~~Gl~Vdp~-----~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG------GeaqLwLAiAy 328 (436)
..++|++..=.+-+|. +.+.|-..+..++.+|++|++.++-.++-+|.+.+ ++|- |++.-.|.--|
T Consensus 8 ~~~aY~~~~v~tAsP~~Li~mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii---~eL~~sLd~egeiA~nL~~LY 84 (145)
T 1vh6_A 8 PYTAYQQNSVNTATPGELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNII---QELNFTLNRNIELSASMGAMY 84 (145)
T ss_dssp ------------CCTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HHHHHHcCCchHHHHHHHHHH
Confidence 3567877442333454 23778889999999999999999999999998877 2222 67776776666
Q ss_pred Hhc
Q 013807 329 DSL 331 (436)
Q Consensus 329 dA~ 331 (436)
+-+
T Consensus 85 ~y~ 87 (145)
T 1vh6_A 85 DYM 87 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 229
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=44.88 E-value=45 Score=27.83 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHhh
Q 013807 339 IMYEKLQSH-PNALVSKRARQFMFSFQAM 366 (436)
Q Consensus 339 aLYkkL~sH-P~~eVrKQAkrLlyiLEAp 366 (436)
.+. +|++| |+.+|++.|+.|+-.+...
T Consensus 58 ~Vn-~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 58 AVN-GVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHH-HHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHccCCcHHHHHHHHHHHHHHHHH
Confidence 443 47665 9999999999999999876
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=44.87 E-value=1.6e+02 Score=25.83 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=64.2
Q ss_pred HHHHHhhcCCcCCcchHHHHHHHHHHHHHHHh---CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807 261 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMD---SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (436)
Q Consensus 261 LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~Ame---rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (436)
=++|-+..|-.|.+.++ |.-+-.+.. +...+.+|..||.....- ...--+--..||++|=.+|+.++|
T Consensus 27 ~~qy~~E~~~~vs~qt~------F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~A 97 (134)
T 3o48_A 27 RQQVVSEGGPTATIQSR------FNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMA 97 (134)
T ss_dssp HHHHHHTTGGGSCHHHH------HHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCChhhH------HHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHH
Confidence 34555444555665433 333333443 345678999999877643 233467888999999999999999
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 013807 338 RIMYEKLQ-SHPNALVSKRARQFMFSFQ 364 (436)
Q Consensus 338 iaLYkkL~-sHP~~eVrKQAkrLlyiLE 364 (436)
+..|+.|- .+|+- .||+.|..-.+
T Consensus 98 r~y~d~lL~~eP~N---~QA~~Lk~~Ie 122 (134)
T 3o48_A 98 KRYVDTLFEHERNN---KQVGALKSMVE 122 (134)
T ss_dssp HHHHHHHHTTCTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCC---HHHHHHHHHHH
Confidence 99999995 67764 68888877666
No 231
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=43.91 E-value=20 Score=28.89 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 276 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 276 ~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
...++++-|+.++.+++.|.|+.|+-....|+...
T Consensus 8 ~l~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~~~a 42 (126)
T 2hsb_A 8 RIRKAEKLVQDAKKEFEMGLYERCCSTAYYAMFHA 42 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45788899999999999999998887777766555
No 232
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=43.85 E-value=48 Score=31.69 Aligned_cols=71 Identities=14% Similarity=0.013 Sum_probs=45.5
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013807 286 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFM 360 (436)
Q Consensus 286 ~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLl 360 (436)
.|..-|++|.+++=+..+++-+..+ +-|=.-..+.|..+=+....++.+.|...|-.|+.-+||--|-.|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lL 95 (240)
T 3l9t_A 25 TGGQQMGRGSMKQYVARLEKDFSLI----EHGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLF 95 (240)
T ss_dssp ---------CHHHHHHHHHHHHTC---------CHHHHHHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHh----hcccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4777899999999888888866655 3333455566666666666899999999999999999998887754
No 233
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=42.36 E-value=42 Score=33.28 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhcCCcCCcchH---HHHHHHHHH-HHHHHhCCchhhhhhHHHH-HHhhccc-CccchhHHHHHHHH
Q 013807 253 KEERTRQLLAAYKKSVGLNVDPKLK---SECEKALKD-GDSLMDSGKLKEALPFYEK-VMNKMVF-KSELHGLAALQWSI 326 (436)
Q Consensus 253 R~~rtke~LaaYrk~~Gl~Vdp~~k---~e~eea~~~-Gk~AmerGkYr~AV~~lEk-A~~~v~~-~S~LGGeaqLwLAi 326 (436)
+..||-++|.+ -|+...- -|+.+.|+. .-+++.+++|.+|++.|-. |..++.. +...|++..+.++-
T Consensus 11 ~~~~~i~rl~~-------~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llve 83 (336)
T 3lpz_A 11 KIERIIARLQR-------RIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVD 83 (336)
T ss_dssp HHHHHHHHHHH-------HHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHH
Confidence 34455555555 2333444 566666654 7789999999999998877 4555443 35778899999999
Q ss_pred HHHhcC
Q 013807 327 CQDSLH 332 (436)
Q Consensus 327 AydA~G 332 (436)
+|+..+
T Consensus 84 vy~~~~ 89 (336)
T 3lpz_A 84 TFRQAG 89 (336)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 998876
No 234
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=39.02 E-value=34 Score=27.44 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
+.+.+..+..+=..|+|.+|+.+|..|++.+
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445666666677888888888888877654
No 235
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=38.96 E-value=44 Score=26.30 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHH
Q 013807 246 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEK 282 (436)
Q Consensus 246 teEEkaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~ee 282 (436)
|+||+..|.+.++..|+.-| =-||++|+..-+.++.
T Consensus 3 tEeE~~~Rr~avq~Aian~R-LEGLEpd~~~l~~~er 38 (61)
T 3shg_B 3 SEEEIEYRRRDARNALASQR-LEGLEPDPQVVAQMER 38 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TTTCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhh-hccCCCCHHHHHHHHH
Confidence 89999999999999999977 6699999998776653
No 236
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=37.40 E-value=22 Score=37.38 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHH
Q 013807 281 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 336 (436)
Q Consensus 281 eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 336 (436)
+..++.++.+++.|+|+-|.+.+..++..=+-+. ++.--+|-||+.+|...|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~----~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR----AARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHhcc
Confidence 4577889999999999999999999887765554 577778888888886544
No 237
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=37.20 E-value=26 Score=27.71 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=18.0
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 013807 323 QWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkk 343 (436)
..|+-.|..|+.++|+.+|++
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKK 36 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 446778999999999999975
No 238
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=36.73 E-value=27 Score=27.89 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=18.0
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 013807 323 QWSICQDSLHRPKEARIMYEK 343 (436)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkk 343 (436)
..|+-.|..|+.+||+.+|++
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~ 44 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKK 44 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 446778999999999999975
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=36.55 E-value=59 Score=31.65 Aligned_cols=76 Identities=12% Similarity=0.041 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHH-HHHHHhCCchhhhhhHHHHH-Hhhcc-cCccchhHHHHHHHHHH
Q 013807 252 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKD-GDSLMDSGKLKEALPFYEKV-MNKMV-FKSELHGLAALQWSICQ 328 (436)
Q Consensus 252 aR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~-Gk~AmerGkYr~AV~~lEkA-~~~v~-~~S~LGGeaqLwLAiAy 328 (436)
.+-.||.++|.+ -|+...--|+.+.|+. .-+++.+++|.+|++.+... ..++. .+...|++..+.+.-+|
T Consensus 11 ~~~~r~l~rl~~-------~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~ 83 (312)
T 2wpv_A 11 AKLAKTLQRFEN-------KIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVY 83 (312)
T ss_dssp -CHHHHHHHHHH-------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHH
Confidence 345566666655 2334455666666665 78889999999999997774 44343 34467788888889999
Q ss_pred HhcCCh
Q 013807 329 DSLHRP 334 (436)
Q Consensus 329 dA~GR~ 334 (436)
+..+-.
T Consensus 84 ~~~~~~ 89 (312)
T 2wpv_A 84 DLAEVK 89 (312)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 887653
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=36.33 E-value=91 Score=31.16 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=48.0
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccC--ccchhHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVFK--SELHGLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~~--S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
+.|..++++|+|.+|+..+.+..+.|..- ..+-=|+.+--.-.|-+.++...|.++|.+-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77999999999999999999998888541 12223555556666788999999999998874
No 241
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=36.11 E-value=54 Score=25.59 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
..+...+..+..+=..|+|.+|+.+|..|++.+
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344444555555555666666666666665544
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=34.76 E-value=27 Score=31.90 Aligned_cols=80 Identities=13% Similarity=0.176 Sum_probs=50.6
Q ss_pred CcCCcchHHHHHHHHHH----HHHHHhCCchhhhhhHHHHHHhhcccCccchh--HHHHH--HHHHHHhcCChHHHHHHH
Q 013807 270 LNVDPKLKSECEKALKD----GDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQ--WSICQDSLHRPKEARIMY 341 (436)
Q Consensus 270 l~Vdp~~k~e~eea~~~----Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGG--eaqLw--LAiAydA~GR~~EAiaLY 341 (436)
|.|+|..-+.|-.-++. |.-..+ +-+.+-++.||.|...+|+.....- =|.|| +|. +..++..++|+.+|
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy 83 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYF 83 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHH
Confidence 35666666666544443 333223 3337777899999999998742221 34444 675 57789999999999
Q ss_pred HHHhcCCCHHH
Q 013807 342 EKLQSHPNALV 352 (436)
Q Consensus 342 kkL~sHP~~eV 352 (436)
+.+.++ |...
T Consensus 84 ~~a~~~-hKkF 93 (161)
T 4h7y_A 84 QMARAN-CKKF 93 (161)
T ss_dssp HHHHHH-CTTB
T ss_pred HHHHHH-hHHH
Confidence 999766 5544
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=34.65 E-value=1.4e+02 Score=26.49 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCC---chhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHH
Q 013807 283 ALKDGDSLMDSG---KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQ 358 (436)
Q Consensus 283 a~~~Gk~AmerG---kYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkr 358 (436)
.|.-+-.+..+. ..+++|.+||.....-+. ---+--..||++|=.+|+.++|+..|+.| +..|+- .||+.
T Consensus 42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~---~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---~QA~~ 115 (144)
T 1y8m_A 42 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---KQVGA 115 (144)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS---THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC---HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc---chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---HHHHH
Confidence 344444454443 456899999997774332 23467889999999999999999999999 578864 58888
Q ss_pred HHHHHH
Q 013807 359 FMFSFQ 364 (436)
Q Consensus 359 LlyiLE 364 (436)
|....+
T Consensus 116 Lk~~Ie 121 (144)
T 1y8m_A 116 LKSMVE 121 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877776
No 244
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=34.38 E-value=45 Score=26.58 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
...+-+.++.+..+=..|+|.+|+.+|..+++.+
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l 49 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVL 49 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3555566777777888999999999999987765
No 245
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=33.79 E-value=48 Score=22.66 Aligned_cols=22 Identities=45% Similarity=0.759 Sum_probs=16.1
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcc
Q 013807 411 LPYMIFLASPIFVILLIAVQRGS 433 (436)
Q Consensus 411 l~y~~~l~sPi~~v~~~A~~k~~ 433 (436)
...+|++..|++ ++++|.|+||
T Consensus 7 ~l~lIv~aGP~V-I~lLa~r~Gn 28 (29)
T 3arc_Y 7 MIAMIGIAGPMI-IFLLAVRRGN 28 (29)
T ss_dssp HHHHHHHHHHHH-HHHHHHTTCC
T ss_pred HHHHHHhcCChh-eeehhhhcCC
Confidence 456677778865 5678899987
No 246
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=33.42 E-value=51 Score=26.04 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
..+-+.++.+...=..|+|.+|+.+|..+++.+
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 345556677777788999999999999987765
No 247
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.70 E-value=76 Score=31.09 Aligned_cols=90 Identities=8% Similarity=0.005 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHH--HHHhcCC
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSI--CQDSLHR 333 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAi--AydA~GR 333 (436)
+..+.+..+.++...++. ..+..++.|+-+++.|+|..|++.|.++.+.+... +-.+.++|.+ ++=..+.
T Consensus 112 ~l~~~~~~~~~~~~~e~e-----~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~kid~~l~~irl~l~~~d 183 (429)
T 4b4t_R 112 ELNEKIQKLEEDDEGELE-----QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST---GAKIDVMLTIARLGFFYND 183 (429)
T ss_dssp HHHHHHHHHHHCCSCCCC-----CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---CSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhccccHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhcc
Confidence 444555555554322221 12235678999999999999999999999988543 3344444332 3334688
Q ss_pred hHHHHHHHHHHh----cCCCHHHH
Q 013807 334 PKEARIMYEKLQ----SHPNALVS 353 (436)
Q Consensus 334 ~~EAiaLYkkL~----sHP~~eVr 353 (436)
...|...++++. ..++++++
T Consensus 184 ~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 184 QLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCHHHH
Confidence 999999999874 34555443
No 248
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=32.44 E-value=42 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcCCcc
Q 013807 248 EARAAKEERTRQLLAAYKKSVGLNVDPK 275 (436)
Q Consensus 248 EEkaaR~~rtke~LaaYrk~~Gl~Vdp~ 275 (436)
+|+.+=++++++.|.+.|.-.|+.++|+
T Consensus 22 eEW~awRa~~~~~L~eer~~~~~~~~~~ 49 (50)
T 3zwl_E 22 KQWTEYREKIGQEMEKSMNFKIFDVQPE 49 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4666677888999999999999999986
No 249
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=31.64 E-value=2.5e+02 Score=27.59 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=50.2
Q ss_pred HHHHHh-----CCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHh-cCChHHHHHHHHHHhc---C--CCHH----
Q 013807 287 GDSLMD-----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS-LHRPKEARIMYEKLQS---H--PNAL---- 351 (436)
Q Consensus 287 Gk~Ame-----rGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA-~GR~~EAiaLYkkL~s---H--P~~e---- 351 (436)
|..++. -|..+.|..+||+|+++-+.+. + .+...++--|-- .|+.++|..+.++-.. | |...
T Consensus 206 G~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-i--d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 206 TKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-P--DHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-S--HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-c--hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 555555 3999999999999999886332 2 345556665544 5999999999998753 3 5555
Q ss_pred -HHHHHHHHH
Q 013807 352 -VSKRARQFM 360 (436)
Q Consensus 352 -VrKQAkrLl 360 (436)
-+++|+.||
T Consensus 283 ~~q~eA~~LL 292 (301)
T 3u64_A 283 LSQKRARWLK 292 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 566777765
No 250
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=31.05 E-value=1.6e+02 Score=28.79 Aligned_cols=57 Identities=11% Similarity=0.055 Sum_probs=40.8
Q ss_pred HHHHHhCC-chhhhhhHHHHHHhhcccCccchhHHHHH--HHHHHHhc-C-ChHHHHHHHHHHh-cCCC
Q 013807 287 GDSLMDSG-KLKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSL-H-RPKEARIMYEKLQ-SHPN 349 (436)
Q Consensus 287 Gk~AmerG-kYr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~-G-R~~EAiaLYkkL~-sHP~ 349 (436)
|..+..-| .|.+++.++++++..-+-+ .++| -..|++.+ + +.++++++|.++. .||.
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKS------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence 66777777 4899999999888655443 2344 44566666 7 8889999998885 6764
No 251
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.88 E-value=43 Score=28.32 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
.+...+..+..+=..|+|.+|+.+|..|++++
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 33334444444445566666666666655543
No 252
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=30.73 E-value=44 Score=26.89 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807 279 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV 311 (436)
Q Consensus 279 e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (436)
++-+.++.|+..---|.|..|+.+|+.|++.+.
T Consensus 11 ~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 11 MIVENVKLAREYALLGNYDSAMVYYQGVLDQMN 43 (78)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 456688899999999999999999999988774
No 253
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=30.25 E-value=79 Score=25.45 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
..+-+.+..+..+=..|+|.+|+.+|..|++.+
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l 45 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDML 45 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344444455555555666666666666665543
No 254
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=29.98 E-value=75 Score=29.25 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=44.2
Q ss_pred HHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHH
Q 013807 290 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 351 (436)
Q Consensus 290 AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~e 351 (436)
+..+|+- +.||++...+-++....++.-+-+|.||..+|...+|..|-++-...--++
T Consensus 101 lv~~~Kk----DqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 101 LVIQGKR----DKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHTTCH----HHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccH----hHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 4455553 457888888777899999999999999999999999999987765444443
No 255
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=28.09 E-value=1.3e+02 Score=29.79 Aligned_cols=46 Identities=17% Similarity=0.002 Sum_probs=28.7
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 287 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 287 Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
++.++.+|++..|...|.+ -|.+.--. -+|..++|.++|+.|.++.
T Consensus 730 ~~~a~~~~~~~~A~~~~~~-----------~g~~~~a~-~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 730 AKDAETTGKFNLAFNAYWI-----------AGDIQGAK-DLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----------HTCHHHHH-HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCchHHHHHHHHH-----------cCCHHHHH-HHHHHcCChHHHHHHHHHh
Confidence 4455555555555554443 23333333 3488999999999999973
No 256
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=28.08 E-value=2.3e+02 Score=27.47 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHH--------------hCCch-----------------hhhhhHHH
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLM--------------DSGKL-----------------KEALPFYE 304 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~Am--------------erGkY-----------------r~AV~~lE 304 (436)
...+.+..||+++ ..++...|...++.=+... =.|+| ..|...|+
T Consensus 101 ~~~~~i~~yr~ki----e~EL~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq 176 (268)
T 3efz_A 101 EFIQVIEDIKRDF----EESILLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYE 176 (268)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 3456788888765 4456677777765532211 01332 46778888
Q ss_pred HHHhhc------ccCc-cchhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013807 305 KVMNKM------VFKS-ELHGLAALQWSICQDSLHRPKEARIMYEKL 344 (436)
Q Consensus 305 kA~~~v------~~~S-~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 344 (436)
.|++.. ++.. ..-|.+-=+=+--||-++..++|+.|.++-
T Consensus 177 ~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~A 223 (268)
T 3efz_A 177 DALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRA 223 (268)
T ss_dssp HHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 886543 3222 222555444455688999999999998885
No 257
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=27.81 E-value=64 Score=26.12 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
-.+++.-++.++.+++.|.|..|.=+.++|+++.
T Consensus 8 l~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek~ 41 (122)
T 1wol_A 8 IKQAERDLEEARYAKSGGYYELACFLSQQCAEKA 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 3677888999999999999999888887776654
No 258
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=27.65 E-value=62 Score=27.00 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 278 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 278 ~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
.+++.-|+.++.+++.|.|..|.=+.++|+++.
T Consensus 14 ~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~Eka 46 (135)
T 1o3u_A 14 DAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKA 46 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 678889999999999999999888777776654
No 259
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=27.62 E-value=67 Score=22.63 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013807 322 LQWSICQDSLHRPKEARIMYEKLQSHP 348 (436)
Q Consensus 322 LwLAiAydA~GR~~EAiaLYkkL~sHP 348 (436)
.||+--|-++|.++||-++=++++...
T Consensus 6 aQW~eYYrsiG~~~eAeaIe~q~k~~q 32 (33)
T 2bn5_A 6 AQWAEYYRSVGKIEEAEAIEKTLKNKQ 32 (33)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 478889999999999999988887543
No 260
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=27.53 E-value=3.4e+02 Score=28.73 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=41.1
Q ss_pred cCChHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHhhhhhhhccc---CCCCcchHHHHHHh
Q 013807 331 LHRPKEARIMYEKLQSHPNALVSKRARQFMF-SFQAMEMMKVRSS---SDKNTDYRNFFEAF 388 (436)
Q Consensus 331 ~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly-iLEAp~llKv~~~---~~~~t~Yd~Yf~~f 388 (436)
+...+||++.|+|+..+|+..++++=|+-+. .||+.+.-.+.++ +.+.-++-.|+..+
T Consensus 363 IRnvdDAL~sfeKyk~nlnkK~nakDR~AI~nALesvd~~~mAkNL~kfsK~Fk~~d~ai~~ 424 (511)
T 1rh1_A 363 IRSYDDAMSSINKLMANPSLKINATDKEAIVNAWKAFNAEDMGNKFAALGKTFKAADYAIKA 424 (511)
T ss_dssp CCCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHHHCCHHHHHHTTSSSSSCSSSTTHHHHH
T ss_pred ecCHHHHHHHHHHHHhchhhccccccHHHHHHHHHhcCHHHHHHHHHHHhhhcccceeeeeH
Confidence 3458999999999999999999988776543 5666666666655 34444555554444
No 261
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=27.41 E-value=3.3e+02 Score=24.22 Aligned_cols=48 Identities=13% Similarity=0.018 Sum_probs=34.9
Q ss_pred cchhHHHHHHHHHHHhcCCh----HH----HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013807 315 ELHGLAALQWSICQDSLHRP----KE----ARIMYEKLQSHPNALVSKRARQFMFS 362 (436)
Q Consensus 315 ~LGGeaqLwLAiAydA~GR~----~E----AiaLYkkL~sHP~~eVrKQAkrLlyi 362 (436)
++=-++..||..|+...|-. .. .+....+|-.|++++||..|..++--
T Consensus 154 kv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 154 KLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 45567788999999887643 22 23344566789999999999998743
No 262
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=27.05 E-value=97 Score=30.40 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=35.6
Q ss_pred ccccccccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCcCCcc
Q 013807 215 KVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPK 275 (436)
Q Consensus 215 kVsTWGvFPRP~NISkayGGGR~IrpGe~lEteEEkaaR~~rtke~LaaYrk~~Gl~Vdp~ 275 (436)
..+|=|-||||..+-++ |.-...+.+..+|=++.-++.+++.++. -+..||+|-..
T Consensus 19 ptt~vGSfprp~~l~~a----r~~~~~g~i~~~~l~~~~~~ai~~~V~~-Q~~~Gldvvtd 74 (357)
T 3rpd_A 19 PTSTAGSLPKPLWLAEP----ETLWSPWKLQGEELITGKHDALRLSLQD-QQLAGIDIVSD 74 (357)
T ss_dssp CCCCSSCCCCCTTTBCT----TCSSCCBSCCHHHHHHHHHHHHHHHHHH-HHHTTCSSBCC
T ss_pred ccceeccCCCCHHHHHH----HHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHcCCCcccC
Confidence 46889999999988876 2222223454444455555666666655 55789987544
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.85 E-value=3.5e+02 Score=26.70 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccch--hHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ 345 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~ 345 (436)
....++.+++.|+|.+|...+......+-..-.-. =++.+..+-.|=..+....|..++++..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567778889999999999998754432211111 2455555555667899999999999863
No 264
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=26.48 E-value=2.3e+02 Score=22.17 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=41.9
Q ss_pred hhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013807 297 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFM 360 (436)
Q Consensus 297 r~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLl 360 (436)
..+++.|.++++-- .-.|..+-+.++-.+|. .+++....++-.+++..||..|.+-|
T Consensus 72 ~~a~~~L~~~L~d~------~~~VR~~A~~aL~~~~~-~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 ERAVEPLIKLLEDD------SGFVRSGAARSLEQIGG-ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHHHHHC------CTHHHHHHHHHHHHHCS-HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCc-HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56788888877521 24677777778888875 56777777777899999999987654
No 265
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=26.28 E-value=58 Score=34.01 Aligned_cols=105 Identities=13% Similarity=0.131 Sum_probs=58.9
Q ss_pred HHHHHhhcCCcCCcch-HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHH---------HHHHHHHHh
Q 013807 261 LAAYKKSVGLNVDPKL-KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAA---------LQWSICQDS 330 (436)
Q Consensus 261 LaaYrk~~Gl~Vdp~~-k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaq---------LwLAiAydA 330 (436)
+.+.-+-.|++-|... ..+++++-...-.-|-.-+=+-=++.|.+|.+.+ |-+|.++. |---+|-++
T Consensus 264 peeiyealgfn~de~qrq~~ak~~a~d~~~~~~~nr~riqsDVL~kAsEII---sDfgkKItEkyGeKykklAkELAe~a 340 (505)
T 3few_X 264 PEEIYEALGFNNEEPQRQNQAKKAAYDVFYSFSMNRDRIQSDVLNKAAEVI---SDIGNKVGDYLGDAYKSLAREIADDV 340 (505)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHHH---HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccchHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455567888887643 3444433333222211111122255566666655 34443332 222344444
Q ss_pred -------cCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhh
Q 013807 331 -------LHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMK 370 (436)
Q Consensus 331 -------~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLEAp~llK 370 (436)
+...+||++.|+|+.++|+..++++=|. .|..|.+.+.
T Consensus 341 KNFQGKKIRSvdDALaSfEKyksNlnkKfnakDR~--AIanALeSvD 385 (505)
T 3few_X 341 KNFQGKTIRSYDDAMASLNKVLSNPGFKFNRADSD--ALANVWRSID 385 (505)
T ss_dssp HTCTTCCCCCHHHHHHHHHHHHTCTTCCCCHHHHH--HHHHHHHHCC
T ss_pred hhccCCccCCHHHHHHHHHHHhhChhhhcchhhHH--HHHHHHHHcC
Confidence 4568999999999999999999987665 3444444433
No 266
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=25.61 E-value=1.9e+02 Score=24.30 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHH
Q 013807 256 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVM 307 (436)
Q Consensus 256 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~ 307 (436)
.|...|.. -+.+|-+-....-..++..|...+.+|..++|+.|-.+.|++.
T Consensus 11 ~te~Ai~~-A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe 61 (98)
T 4fm3_A 11 LTEQALEQ-AKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAE 61 (98)
T ss_dssp HHHHHHHH-HHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44555555 3345554444445788999999999999999999999999963
No 267
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=25.13 E-value=44 Score=30.31 Aligned_cols=76 Identities=13% Similarity=-0.010 Sum_probs=43.8
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhccc------------------CccchhHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMVF------------------KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 346 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~~------------------~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 346 (436)
+.|+.|+..|++.-|...|.++-+.-.. -....|...+-. +|+=-+|+.++|+.||.+.-+
T Consensus 39 ~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af-~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 39 RLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSML-LNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHH-HHHHHcCCHHHHHHHHHHCCC
Confidence 4599999999999999988886322111 111112222222 233346888888888876655
Q ss_pred CCCH-------HHHHHHHHHHH
Q 013807 347 HPNA-------LVSKRARQFMF 361 (436)
Q Consensus 347 HP~~-------eVrKQAkrLly 361 (436)
.|-. ..+..|.+|+-
T Consensus 118 ~~eA~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 118 LPLAYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCcHHHHHHHHH
Confidence 4422 12555666653
No 268
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=25.03 E-value=65 Score=26.04 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013807 277 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 310 (436)
Q Consensus 277 k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v 310 (436)
..+++.-++.++.+++.|.|..|.=+.++|+++.
T Consensus 8 ~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek~ 41 (127)
T 1ufb_A 8 LEQARHNLRHAQGSLGLGDYAWACFAAQQAAEAA 41 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4677888999999999999999888888877664
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.99 E-value=49 Score=28.10 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=22.5
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013807 285 KDGDSLMDSGKLKEALPFYEKVMNKMV 311 (436)
Q Consensus 285 ~~Gk~AmerGkYr~AV~~lEkA~~~v~ 311 (436)
..+.++...|+|.+|++..++|++.+.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 347788999999999999999887663
No 270
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.10 E-value=76 Score=25.35 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH--------hcCCCHHHHHH
Q 013807 321 ALQWSICQDSLHRPKEARIMYEKL--------QSHPNALVSKR 355 (436)
Q Consensus 321 qLwLAiAydA~GR~~EAiaLYkkL--------~sHP~~eVrKQ 355 (436)
.+.-|+-+|..|+.++|+.+|.+- +.-|++..+..
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~ 61 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN 61 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 445677789999999999999752 35577665443
No 271
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=24.07 E-value=55 Score=32.15 Aligned_cols=123 Identities=11% Similarity=0.201 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHH
Q 013807 249 ARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ 328 (436)
Q Consensus 249 EkaaR~~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAy 328 (436)
.-|-|.+|++++-..||.++|--+++...+++.+.+.+=.. ...-||..|.
T Consensus 115 KLAfryr~IkeiY~~y~~nv~~LL~~~~r~~w~~lr~e~e~-----------------------------~Td~WLs~a~ 165 (274)
T 3geb_A 115 KLAFRYRRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEA-----------------------------LTDLWLTHSL 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHCTTHHHHHHHHHHHHHH-----------------------------HTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccccccCchhHHHHHHHHHHHHH-----------------------------HHhHHHHHHH
Confidence 34899999999999999999999999888888877644322 2344666655
Q ss_pred HhcCChHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhhhhhhcccCC-C----CcchHHHHHHhhcccccccC
Q 013807 329 DSLHRPKEARIMYEKLQSH------PNALVSKRARQFMFSFQAMEMMKVRSSSD-K----NTDYRNFFEAFVEDKTNYPL 397 (436)
Q Consensus 329 dA~GR~~EAiaLYkkL~sH------P~~eVrKQAkrLlyiLEAp~llKv~~~~~-~----~t~Yd~Yf~~f~~~kt~y~~ 397 (436)
..+ .+...=..+ --.-|.--||=|||+|=.+ ..+.+.|. . -+-++..-+.|..+-++-.+
T Consensus 166 k~L-------~~i~sr~~~vNVLVTs~qLVPaLaK~LLygL~~~--fpieNIYSa~kiGKesCFerI~~RFG~k~~yvvI 236 (274)
T 3geb_A 166 KAL-------NLINSRPNCVNVLVTTTQLIPALAKVLLYGLGSV--FPIENIYSATKTGKESCFERIMQRFGRKAVYVVI 236 (274)
T ss_dssp HHH-------HHHHHSTTEEEEEEESSCHHHHHHHHHHTTCTTT--SCGGGEEETTTTCHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHH-------HhhccCCceeEEEEecCchHHHHHHHHHhhcccc--eecccccchhhcCHHHHHHHHHHHhCCCceEEEE
Confidence 433 121110011 1134677899999999876 55555543 2 34566666777555566668
Q ss_pred ccCcchhhhhhh
Q 013807 398 QEAGSEEGALTQ 409 (436)
Q Consensus 398 ~e~~~~e~~l~q 409 (436)
.|+.+||.+..+
T Consensus 237 GDG~eEe~AAk~ 248 (274)
T 3geb_A 237 GDGVEEEQGAKK 248 (274)
T ss_dssp ESSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 887777777654
No 272
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=22.97 E-value=2.1e+02 Score=28.58 Aligned_cols=60 Identities=5% Similarity=-0.020 Sum_probs=36.9
Q ss_pred HhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHHh---cCCCHHHH
Q 013807 291 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ---SHPNALVS 353 (436)
Q Consensus 291 merGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~---sHP~~eVr 353 (436)
-..|++.+|...|+...+. .-..--.+---|.-+|-..|+.++|..++++++ ..|+..+-
T Consensus 151 ~~~g~~~~A~~l~~~M~~~---G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 151 CRKGDADKAYEVDAHMVES---EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHT---TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred HHCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 4567777777777775432 111122333345567777788888888888775 46776654
No 273
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=28.35 E-value=18 Score=38.48 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHH
Q 013807 280 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 337 (436)
Q Consensus 280 ~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 337 (436)
.+..++.++.+|+.|+|+-|.+++..++..=+-+. ++.--+|-||+.+|...|.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~----~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANK----DARALQADAMEQLGYQTEN 514 (668)
Confidence 35678889999999999999999999877655544 5677789999999987764
No 274
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=22.57 E-value=97 Score=30.49 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=45.6
Q ss_pred chhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhc-----CChHHHHHHHHHH-hcCCCH
Q 013807 295 KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-----HRPKEARIMYEKL-QSHPNA 350 (436)
Q Consensus 295 kYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-----GR~~EAiaLYkkL-~sHP~~ 350 (436)
..++|...+|+|+++=+ +-+.|.+...|.+.|..+ |..+.|..+|++- .-+|+.
T Consensus 178 ~l~~A~a~lerAleLDP--~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 178 TVHAAVMMLERACDLWP--SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHHCT--THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHHHHhCC--CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 35788899999988764 456899999999999997 9999999999987 468864
No 275
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=22.21 E-value=5.3e+02 Score=24.78 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=30.1
Q ss_pred hhhhhhHHHHHHhhcccCccchhHHHHH--HHHHHHhcCC--hHHHHHHHHHHh-cCC
Q 013807 296 LKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSLHR--PKEARIMYEKLQ-SHP 348 (436)
Q Consensus 296 Yr~AV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~GR--~~EAiaLYkkL~-sHP 348 (436)
|.+++.+++.++..-|-+ -++| -..+++.+|+ .+++++.|.++. .||
T Consensus 90 l~~EL~~~~~~L~~~PKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp 141 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKS------YGTWHHRCWLLSRLPEPNWARELELCARFLEADE 141 (331)
T ss_dssp HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence 788999999988755433 2233 3445666664 567777777763 455
No 276
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.01 E-value=1.1e+02 Score=30.32 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=33.7
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccC
Q 013807 272 VDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK 313 (436)
Q Consensus 272 Vdp~~k~e~eea~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~ 313 (436)
+-+..-....+.++.|-++|..|++.+|+..|..++-.+++-
T Consensus 94 ~i~~~l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~ 135 (320)
T 3mkr_B 94 AVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLL 135 (320)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGC
T ss_pred CcccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhe
Confidence 334344455568999999999999999999999998888654
No 277
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.72 E-value=3.7e+02 Score=27.53 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccCccchhHHHHHHHHHHHhcCChHHHHHHHHHH--hcCCCHHHHHHHHH
Q 013807 283 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL--QSHPNALVSKRARQ 358 (436)
Q Consensus 283 a~~~Gk~AmerGkYr~AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL--~sHP~~eVrKQAkr 358 (436)
.+-.|+.+-=++.+..|..+|++|.++.|. .|...-|||+.+-..|+.=+|.-.|-+- ..+|.+.-+..-..
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~----~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~ 228 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCC----CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 456688888888889999999999999965 5889999999999999888887766544 36888765554433
No 278
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.74 E-value=1e+02 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=22.0
Q ss_pred HHHHHHhcCChHHHHHHHHHH--------hcCCCHHHHH
Q 013807 324 WSICQDSLHRPKEARIMYEKL--------QSHPNALVSK 354 (436)
Q Consensus 324 LAiAydA~GR~~EAiaLYkkL--------~sHP~~eVrK 354 (436)
.|+-.|..|+.++|+.+|..= +.-|++..+.
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~ 57 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKD 57 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 355679999999999999753 2346666544
No 279
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=20.66 E-value=4.2e+02 Score=23.07 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=31.0
Q ss_pred ccCCCcc--cCCCCccCcHHHHHHHHHHHHHHHHHHHhhcC-CcCCcchH-HHHHHHHHHHHHHH
Q 013807 231 TFGGGRT--IRPGDVLETAEARAAKEERTRQLLAAYKKSVG-LNVDPKLK-SECEKALKDGDSLM 291 (436)
Q Consensus 231 ayGGGR~--IrpGe~lEteEEkaaR~~rtke~LaaYrk~~G-l~Vdp~~k-~e~eea~~~Gk~Am 291 (436)
|-|=|.| |++|+.+..+|..+.=...+++..+.-++-+. ..+..... +.+--+|..|-..+
T Consensus 29 TIGyGht~~v~~g~~iT~~ea~~ll~~dl~~~~~~v~~~~~~v~l~q~q~dALvSfayNvG~g~~ 93 (163)
T 1xju_A 29 TDGIGNTHGVTPGVRKTDQQIAADWEKNILIAERCINQHFRGKDMPDNAFSAMTSAAFNMGCNSL 93 (163)
T ss_dssp CTTCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHCHHHH
T ss_pred eEEeccccCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcchh
Confidence 6677777 88998874444433333333333333333332 44444433 55556677775433
No 280
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=20.44 E-value=99 Score=24.86 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=22.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHH--------hcCCCHHHHH
Q 013807 323 QWSICQDSLHRPKEARIMYEKL--------QSHPNALVSK 354 (436)
Q Consensus 323 wLAiAydA~GR~~EAiaLYkkL--------~sHP~~eVrK 354 (436)
..|+-.|..|+.++|+.+|+.= +.-|++..+.
T Consensus 20 ~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~ 59 (93)
T 1wfd_A 20 KRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRC 59 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3467789999999999999752 3446666543
No 281
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=20.22 E-value=3.5e+02 Score=22.94 Aligned_cols=58 Identities=14% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCcCCcchH-HHHHHHHHHHHHHH
Q 013807 234 GGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLK-SECEKALKDGDSLM 291 (436)
Q Consensus 234 GGR~IrpGe~lEteEEkaaR~~rtke~LaaYrk~~Gl~Vdp~~k-~e~eea~~~Gk~Am 291 (436)
.|..+++|..+..+|..+-=...+....+.-++-+...+..... +.+--+|..|-.+|
T Consensus 41 tg~~v~~g~~iT~~ea~~ll~~dl~~~~~~v~~~~~v~l~q~q~dALvsf~yNvG~g~~ 99 (146)
T 2anv_A 41 DGNSVASGMTITAEKSSELLKEDLQWVEDAISSLVRVPLNQNQYDAMCSLIFNIGKSAF 99 (146)
T ss_dssp TTBCCCTTCBCCHHHHHHHHHHHTHHHHHHHHHHCCSCCCHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhhccCCCcc
Confidence 45678888877444444333334444444444444444444433 45555677765433
Done!