Query 013809
Match_columns 436
No_of_seqs 171 out of 377
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 2.1E-56 4.5E-61 439.1 5.2 295 120-431 6-344 (351)
2 KOG3849 GDP-fucose protein O-f 97.7 0.00037 8E-09 70.2 11.3 278 110-427 26-365 (386)
3 PF05830 NodZ: Nodulation prot 97.2 0.0074 1.6E-07 61.6 13.9 256 113-425 2-294 (321)
4 PLN02232 ubiquinone biosynthes 56.5 27 0.00058 31.6 5.6 99 246-357 48-152 (160)
5 PF14771 DUF4476: Domain of un 54.0 7.3 0.00016 32.5 1.4 55 330-401 39-94 (95)
6 KOG3705 Glycoprotein 6-alpha-L 51.4 36 0.00078 36.9 6.3 130 251-421 340-479 (580)
7 PF00799 Gemini_AL1: Geminivir 46.9 22 0.00048 31.7 3.4 28 328-356 14-41 (114)
8 PF10892 DUF2688: Protein of u 34.6 30 0.00064 27.8 2.0 16 327-343 42-57 (60)
9 PF04561 RNA_pol_Rpb2_2: RNA p 31.6 15 0.00033 33.1 -0.1 17 336-352 54-70 (190)
10 PRK15451 tRNA cmo(5)U34 methyl 29.9 39 0.00084 32.7 2.4 27 326-352 204-230 (247)
11 smart00874 B5 tRNA synthetase 26.2 55 0.0012 25.5 2.2 24 323-347 12-35 (71)
12 TIGR01354 cyt_deam_tetra cytid 23.6 85 0.0019 27.9 3.2 47 331-381 80-127 (127)
13 PRK10556 hypothetical protein; 22.5 54 0.0012 29.1 1.6 19 331-349 3-21 (111)
14 PF03254 XG_FTase: Xyloglucan 22.2 1.1E+02 0.0023 33.7 4.2 77 345-425 351-435 (476)
15 PRK05578 cytidine deaminase; V 22.1 88 0.0019 28.3 3.0 96 276-382 25-131 (131)
16 COG1312 UxuA D-mannonate dehyd 21.7 1E+02 0.0022 32.7 3.7 66 203-269 187-272 (362)
17 PF07862 Nif11: Nitrogen fixat 20.1 76 0.0017 23.4 1.8 28 319-347 16-43 (49)
18 PF09400 DUF2002: Protein of u 20.0 61 0.0013 29.0 1.5 19 331-349 3-21 (111)
19 PF03484 B5: tRNA synthetase B 20.0 61 0.0013 25.7 1.4 25 323-348 12-36 (70)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=2.1e-56 Score=439.13 Aligned_cols=295 Identities=35% Similarity=0.604 Sum_probs=205.1
Q ss_pred eCCChhhHHHHHHHHHHHHHHcCCcEEeccCCCCccccCCCC-----CcccccHHHHHHHccccceecccCCcccCCCCC
Q 013809 120 TSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDASD-----FSEIFDVDRFISVLSKDVKIIKQIPRKGGKSLT 194 (436)
Q Consensus 120 ~nGGLNqqR~~IcDaVavARiLNATLVlP~Ld~~s~W~D~S~-----F~dIFDvdhFI~sL~~dVrIVk~LP~~~~~~~~ 194 (436)
+.||+||||.++++||++|++||+|||||.+.....|++.++ |+++||+++|++.++++|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 899999999999999999999999999999999999999987 999999999999999999999998865432100
Q ss_pred ------------------------------CccccCCC-cCChhHHHhhhhhhhhhc------ceEEEeccccccccc-C
Q 013809 195 ------------------------------PYHMRVPR-KCNEKCYQNRVLPVLLKR------HAVQLSKFDYRLANK-L 236 (436)
Q Consensus 195 ------------------------------~~~~~~p~-~~s~~~Y~~~ilP~l~k~------~VI~l~~~d~rLa~~-l 236 (436)
........ +..+.+|.++++|.+.++ +++.|..+...+.++ .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 11112222 567778888899999887 999999999998874 7
Q ss_pred chhhhhhcccccccccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcCCCCCChHHHHHHHHHHHHhhhcc
Q 013809 237 DTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLH 316 (436)
Q Consensus 237 p~~iQrLRCrvnf~ALrF~p~I~~lg~~lV~RLR~~s~pfIALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~ 316 (436)
+.++|| +|+|+++|+++|++++++++..+++|||+|||+|+|| +++|.+++ ++.+|..+|... ++
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~~--~~ 230 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCWG--KK 230 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH---GG
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHhhc--cc
Confidence 888887 9999999999999999999955689999999999999 89999955 777788788652 23
Q ss_pred CCCchhhhccCCCCCCHHHHHHHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCcccccccccc-ccccccCccch
Q 013809 317 ISNPDKERRHGKCPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASK-ELEPFSSFSSR 395 (436)
Q Consensus 317 ~~~~~~~R~~G~CPLTPeEvgl~L~aLGf~~~T~IYlAageiyGg~~~m~~L~~~FPn~~tKe~L~s~-EL~pF~~~ss~ 395 (436)
.+++...+..|.||++|++++.+++++|+.+.|.||||++++|||.+.|++|++.||++++|+++.+. |+++|.. ++
T Consensus 231 ~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~ 308 (351)
T PF10250_consen 231 SINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQ 308 (351)
T ss_dssp GTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------S-
T ss_pred cccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cc
Confidence 45777889999999999999999999999999999999999999999999999999999999999999 9999976 89
Q ss_pred hhhhhhhhhcCCCeeeeCCCCchhhhhhhhhhhhhh
Q 013809 396 MAALDFIVCDESDIFVTNNNGNILGTSQPFVQMLKS 431 (436)
Q Consensus 396 ~AALDyiVc~~SDVFV~t~~GNma~~v~g~r~~~~~ 431 (436)
+|+||++||++||+||+|..++|+..|+++|++.+-
T Consensus 309 ~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~ 344 (351)
T PF10250_consen 309 LAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGK 344 (351)
T ss_dssp -HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSS
T ss_pred hhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCC
Confidence 999999999999999999988999999999998753
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00037 Score=70.16 Aligned_cols=278 Identities=20% Similarity=0.237 Sum_probs=147.9
Q ss_pred CCCCcEEEEE-eCCChhhHHHHHHHHHHHHHHcCCcEEeccCCC---CccccCCCCCcccccHH------------HHHH
Q 013809 110 THSNRYLAIV-TSGGLNQQRTGIIDAVVAARILNATLVIPKLDQ---KSFWKDASDFSEIFDVD------------RFIS 173 (436)
Q Consensus 110 ~~snGYL~V~-~nGGLNqqR~~IcDaVavARiLNATLVlP~Ld~---~s~W~D~S~F~dIFDvd------------hFI~ 173 (436)
...||||+.- |-|-+.+|-....-..|.|+.||.|||+|..-. -.+-+--=.|+..|.++ .|+.
T Consensus 26 ~DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vepl~~YhRVitm~dFm~ 105 (386)
T KOG3849|consen 26 WDPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEPLAKYHRVITMQDFMK 105 (386)
T ss_pred CCCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeecccHhhhhhheeHHHHHH
Confidence 4569998876 999999999999999999999999999996433 11100112788888875 3444
Q ss_pred Hccccceec--------c----cCCcc---cCCCCCCccccCCCcC-------ChhHH------Hhhh---hhhh-----
Q 013809 174 VLSKDVKII--------K----QIPRK---GGKSLTPYHMRVPRKC-------NEKCY------QNRV---LPVL----- 217 (436)
Q Consensus 174 sL~~dVrIV--------k----~LP~~---~~~~~~~~~~~~p~~~-------s~~~Y------~~~i---lP~l----- 217 (436)
.|..+.=.- | .-|.+ ..+-.+|+- |.|- ..+|| +++. ...+
T Consensus 106 klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFG---PfWDqfhvsFv~sE~f~~i~Fd~~~~~~~~kW~~kfp~ 182 (386)
T KOG3849|consen 106 KLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFG---PFWDQFHVSFVGSEYFGDIGFDLNQMGSRKKWLEKFPS 182 (386)
T ss_pred HhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCCC---CchhheEeeeeccccccccccchhhcchHHHHHhhCCc
Confidence 444332100 0 00100 000001100 1110 01111 0111 1111
Q ss_pred hhcceEEEecccccccc-cCchhhhhhcccccccccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcCCCC
Q 013809 218 LKRHAVQLSKFDYRLAN-KLDTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYG 296 (436)
Q Consensus 218 ~k~~VI~l~~~d~rLa~-~lp~~iQrLRCrvnf~ALrF~p~I~~lg~~lV~RLR~~s~pfIALHLR~E~DMLAfsgC~~g 296 (436)
++|-|+.|++.-....- .---.+||- ||.+.+|.+.|++.+.-- ..+||+++|||.-.||+-- |.+-
T Consensus 183 eeyPVLAf~gAPA~FPv~~e~~~lQkY--------l~WS~r~~e~~k~fI~a~--L~rpfvgiHLRng~DWvra--Cehi 250 (386)
T KOG3849|consen 183 EEYPVLAFSGAPAPFPVKGEVWSLQKY--------LRWSSRITEQAKKFISAN--LARPFVGIHLRNGADWVRA--CEHI 250 (386)
T ss_pred ccCceeeecCCCCCCccccccccHHHH--------HHHHHHHHHHHHHHHHHh--cCcceeEEEeecCchHHHH--HHHh
Confidence 23456666553222110 000145654 889999999999877542 2469999999999999865 7653
Q ss_pred CChHHHHHHHHHHHHhhh----ccCCCchhhhccCCCCCCHHHHHH----HHHHhCCCCcceEEEEeccccCcccchhhH
Q 013809 297 GGDKERKELGAIRKRWKT----LHISNPDKERRHGKCPLTPLEVGL----MLRALGYGSDVHIYVASGEVYGGEETLAPL 368 (436)
Q Consensus 297 ~~~~E~~eL~~~R~~wk~----~~~~~~~~~R~~G~CPLTPeEvgl----~L~aLGf~~~T~IYlAageiyGg~~~m~~L 368 (436)
-...- | +... +..-+....-....|-=+-+|+-. -.+.+| .-..+|+|+.. +.-+.-|
T Consensus 251 kd~~~-------~-hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~--dakSVfVAsDs----~hmi~El 316 (386)
T KOG3849|consen 251 KDTTN-------R-HLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIG--DAKSVFVASDS----DHMIDEL 316 (386)
T ss_pred cccCC-------C-ccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhc--ccceEEEeccc----hhhhHHH
Confidence 21100 0 0000 000000000112245444445432 223344 33469999876 2222333
Q ss_pred H-hhCCCccccccccccccccccCccchhhhhhhhhhcCCCeeeeCCCCchhhhhhhhhh
Q 013809 369 K-ALFPNFYSKETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNGNILGTSQPFVQ 427 (436)
Q Consensus 369 ~-~~FPn~~tKe~L~s~EL~pF~~~ss~~AALDyiVc~~SDVFV~t~~GNma~~v~g~r~ 427 (436)
. +++|- .+-...|+| --+-+|..|.-+||-||+|--++|+..|--.|-
T Consensus 317 n~aL~~~-----~i~vh~l~p------dd~y~dLaIlGqadhFiGNCvSsfsafvKRERD 365 (386)
T KOG3849|consen 317 NEALKPY-----EIEVHRLEP------DDMYTDLAILGQADHFIGNCVSSFSAFVKRERD 365 (386)
T ss_pred HHhhccc-----ceeEEecCc------ccchhhhhhhcccchhhhhhHHHHHHHHhhhhc
Confidence 3 22221 111113444 346789999999999999999999888766554
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=97.21 E-value=0.0074 Score=61.62 Aligned_cols=256 Identities=18% Similarity=0.245 Sum_probs=125.6
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHHHHHHcCCcEEeccCCCCccccCC----CCCcccccHHHHHHHcc--ccceecccCC
Q 013809 113 NRYLAIVTSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDA----SDFSEIFDVDRFISVLS--KDVKIIKQIP 186 (436)
Q Consensus 113 nGYL~V~~nGGLNqqR~~IcDaVavARiLNATLVlP~Ld~~s~W~D~----S~F~dIFDvdhFI~sL~--~dVrIVk~LP 186 (436)
+.|++..--+|+|.-=-+++-|-.+|+-.|.||||- |+++ ..|...|++ |-+-.. ..|+|+-+=+
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~d~ 72 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICDDR 72 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-SGG
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEecch
Confidence 578999999999999999999999999999999995 7775 266666654 444433 2345542211
Q ss_pred cccCCCCCCccccCCCcCC---------hh-HHH---hhhhhhhhh------cceEEEecccccccccCchhhhhhcccc
Q 013809 187 RKGGKSLTPYHMRVPRKCN---------EK-CYQ---NRVLPVLLK------RHAVQLSKFDYRLANKLDTDLQKLRCRV 247 (436)
Q Consensus 187 ~~~~~~~~~~~~~~p~~~s---------~~-~Y~---~~ilP~l~k------~~VI~l~~~d~rLa~~lp~~iQrLRCrv 247 (436)
+.....+-.. .|.||. |+ +.. +++--++.- ..||+..-. -..=..++. ||
T Consensus 73 --i~~~~~~g~~-fp~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~----~~~c~~~ae--R~-- 141 (321)
T PF05830_consen 73 --INQFSFPGPF-FPAWWNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACL----MWRCDEEAE--RE-- 141 (321)
T ss_dssp --GGT----SSE-ESGGGGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S------TTSS-HHHH--HH--
T ss_pred --hhhhcCCCCc-ChhHHhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhc----CCcchhHHH--HH--
Confidence 1110000000 133332 11 111 112222221 223333221 111123333 22
Q ss_pred cccccccchHHHHHHHHHHHHHHhcCCceEEEEeccc--hhhhhhhcCCCCCChHHHHHHHHHHHHhhhccCCCchhhhc
Q 013809 248 NYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFE--PDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERR 325 (436)
Q Consensus 248 nf~ALrF~p~I~~lg~~lV~RLR~~s~pfIALHLR~E--~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~ 325 (436)
-|..|+-+++|++..+.+.+.-=. +..=|++|.|.= +|.+.+ +|+ |...+
T Consensus 142 if~slkpR~eIqarID~iy~ehf~-g~~~IGVHVRhGngeD~~~h-~~~-----------------~~D~e--------- 193 (321)
T PF05830_consen 142 IFSSLKPRPEIQARIDAIYREHFA-GYSVIGVHVRHGNGEDIMDH-APY-----------------WADEE--------- 193 (321)
T ss_dssp HHHHS-B-HHHHHHHHHHHHHHTT-TSEEEEEEE---------------------------------HHHH---------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcC-CCceEEEEEeccCCcchhcc-Ccc-----------------ccCch---------
Confidence 288999999999999988765422 345899999931 122222 222 32210
Q ss_pred cCCCCCCHHHHH---HHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCcccccccccc-ccccccC-----ccchh
Q 013809 326 HGKCPLTPLEVG---LMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASK-ELEPFSS-----FSSRM 396 (436)
Q Consensus 326 ~G~CPLTPeEvg---l~L~aLGf~~~T~IYlAageiyGg~~~m~~L~~~FPn~~tKe~L~s~-EL~pF~~-----~ss~~ 396 (436)
.+=+.|- ..++++=...++.|+||+-. ..-++-+++.||.+++-++=.+. .-.+..+ ..-..
T Consensus 194 -----~~L~~V~~ai~~ak~~~~~k~~~IFLATDS----aeVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ 264 (321)
T PF05830_consen 194 -----RALRQVCTAIDKAKALAPPKPVRIFLATDS----AEVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGES 264 (321)
T ss_dssp -----HHHHHHHHHHHHHHTS--SS-EEEEEEES-----HHHHHHHHHHSTTEE----------------HHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhccCCCCeeEEEecCc----HHHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHH
Confidence 0111111 12344555678899999998 57899999999999887654433 2223221 12246
Q ss_pred hhhhhhhhcCCCeee-eCCCCchhhhhhhh
Q 013809 397 AALDFIVCDESDIFV-TNNNGNILGTSQPF 425 (436)
Q Consensus 397 AALDyiVc~~SDVFV-~t~~GNma~~v~g~ 425 (436)
|-+|-+....+|+-| .+-.+.|.+.-+.+
T Consensus 265 ALIDM~LLSrCD~LIr~~ptS~Fsr~asl~ 294 (321)
T PF05830_consen 265 ALIDMYLLSRCDYLIRFPPTSAFSRYASLF 294 (321)
T ss_dssp HHHHHHHHTTSSEEEEESTT-GGGHHHHHH
T ss_pred HHHHHHHHHhCCeEEEcCCCchhhhHHHHh
Confidence 889999999999999 78888898776543
No 4
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=56.45 E-value=27 Score=31.62 Aligned_cols=99 Identities=10% Similarity=-0.076 Sum_probs=57.0
Q ss_pred cccccccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhh----hcCCCCCChHHHH--HHHHHHHHhhhccCCC
Q 013809 246 RVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAF----SGCYYGGGDKERK--ELGAIRKRWKTLHISN 319 (436)
Q Consensus 246 rvnf~ALrF~p~I~~lg~~lV~RLR~~s~pfIALHLR~E~DMLAf----sgC~~g~~~~E~~--eL~~~R~~wk~~~~~~ 319 (436)
-++..+|++.++.++.-+.+.+.|+. +|.++-++...+...+.. .-|.......+.- ...++++-|..
T Consensus 48 v~~~~~l~~~~d~~~~l~ei~rvLkp-GG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~s----- 121 (160)
T PLN02232 48 VTMGYGLRNVVDRLRAMKEMYRVLKP-GSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYS----- 121 (160)
T ss_pred EEecchhhcCCCHHHHHHHHHHHcCc-CeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHH-----
Confidence 34455778778888888888888876 578887776544322110 0111111000000 00112211111
Q ss_pred chhhhccCCCCCCHHHHHHHHHHhCCCCcceEEEEecc
Q 013809 320 PDKERRHGKCPLTPLEVGLMLRALGYGSDVHIYVASGE 357 (436)
Q Consensus 320 ~~~~R~~G~CPLTPeEvgl~L~aLGf~~~T~IYlAage 357 (436)
... +++|+|...+|+..||.+-+.-+++.|-
T Consensus 122 ------i~~-f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 122 ------ING-YLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred ------HHH-CcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 112 5899999999999999988888887765
No 5
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=54.04 E-value=7.3 Score=32.55 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCcccccccccc-ccccccCccchhhhhhh
Q 013809 330 PLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASK-ELEPFSSFSSRMAALDF 401 (436)
Q Consensus 330 PLTPeEvgl~L~aLGf~~~T~IYlAageiyGg~~~m~~L~~~FPn~~tKe~L~s~-EL~pF~~~ss~~AALDy 401 (436)
++|-.+++-+|+-..|+ +.+|..++-++|++++++.--.- +.=.|. +++..|-+|
T Consensus 39 ~~T~~Qv~~il~~f~fd---------------~~kl~~lk~l~p~i~D~~n~~~i~~~f~f~--s~k~~~~~~ 94 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD---------------NDKLKALKLLYPYIVDPQNYYTIIDAFSFS--SDKDKAREI 94 (95)
T ss_pred ceeHHHHHHHHHHcCCC---------------HHHHHHHHHHhhhccCHHHHHHHHHHhcCc--ccHHHHHHh
Confidence 49999999999999998 34799999999999999744433 443343 445555444
No 6
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=51.41 E-value=36 Score=36.89 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=75.7
Q ss_pred ccccchHHHHHHHHHHHHHHhcC--CceEEEEeccchhhhhhhcCCCCCChHHHHHHHHHHHHhhhccCCCchhhhccCC
Q 013809 251 ALSFTDSIQKMGEKLVHQMRMKG--KHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGK 328 (436)
Q Consensus 251 ALrF~p~I~~lg~~lV~RLR~~s--~pfIALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~ 328 (436)
-+|++|-.++.-+ +-||+.+ .|-|++|.|-- | .-|+++.=-.++.|=. |-+
T Consensus 340 L~Rpqp~t~~~l~---~a~k~lg~~~PivGvhvRRT-D--------KVGTEAAfH~~eEYM~-~vE-------------- 392 (580)
T KOG3705|consen 340 LMRPQPATQEKLD---KALKSLGLDKPIVGVHVRRT-D--------KVGTEAAFHALEEYME-WVE-------------- 392 (580)
T ss_pred HhCCChhhHHHHH---HHHHhCCCCCceeeEEEEec-c--------cccchhhhhhHHHHHH-HHH--------------
Confidence 5788888776544 4555544 69999999864 2 2333332222332222 111
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCcccccccccc-cccccc-------Cccchhhhhh
Q 013809 329 CPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASK-ELEPFS-------SFSSRMAALD 400 (436)
Q Consensus 329 CPLTPeEvgl~L~aLGf~~~T~IYlAageiyGg~~~m~~L~~~FPn~~tKe~L~s~-EL~pF~-------~~ss~~AALD 400 (436)
+--.+|..=|=+-..+||||+.+. .-+.--+..|||.. +-.. |.+.-. ..|-.---+|
T Consensus 393 ------~~f~~le~rg~~~~rRiflAsDDp----~vv~EAk~kYPnYe----~igd~eia~~A~l~nRYTd~sL~GvIlD 458 (580)
T KOG3705|consen 393 ------IWFKVLEKRGKPLERRIFLASDDP----TVVPEAKNKYPNYE----VIGDTEIAKTAQLNNRYTDASLMGVILD 458 (580)
T ss_pred ------HHHHHHHHhCCchhheEEEecCCc----hhchHhhccCCCcE----EeccHHHHHHhhccccchhhhhhheeee
Confidence 111122333445566899999983 44555677799852 2222 433322 1223344579
Q ss_pred hhhhcCCCeeeeCCCCchhhh
Q 013809 401 FIVCDESDIFVTNNNGNILGT 421 (436)
Q Consensus 401 yiVc~~SDVFV~t~~GNma~~ 421 (436)
..+.+.+|..|.|.++-.-++
T Consensus 459 Ih~LS~~d~LVCTFSSQVCRv 479 (580)
T KOG3705|consen 459 IHILSKVDYLVCTFSSQVCRV 479 (580)
T ss_pred eeeecccceEEEechHHHHHH
Confidence 999999999999998866544
No 7
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=46.90 E-value=22 Score=31.65 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEEec
Q 013809 328 KCPLTPLEVGLMLRALGYGSDVHIYVASG 356 (436)
Q Consensus 328 ~CPLTPeEvgl~L~aLGf~~~T~IYlAag 356 (436)
.|||||||+...|++|--+ ....||..+
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~ 41 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVC 41 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEee
Confidence 6999999999999999765 356777554
No 8
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=34.65 E-value=30 Score=27.76 Aligned_cols=16 Identities=44% Similarity=0.700 Sum_probs=13.2
Q ss_pred CCCCCCHHHHHHHHHHh
Q 013809 327 GKCPLTPLEVGLMLRAL 343 (436)
Q Consensus 327 G~CPLTPeEvgl~L~aL 343 (436)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 346 9999999999875
No 9
>PF04561 RNA_pol_Rpb2_2: RNA polymerase Rpb2, domain 2; InterPro: IPR007642 RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain []. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble. Many of the bacterial members contain large insertions within this domain, a region known as dispensable region 1 (DRI).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 2Y0S_R 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C ....
Probab=31.58 E-value=15 Score=33.08 Aligned_cols=17 Identities=47% Similarity=0.677 Sum_probs=12.1
Q ss_pred HHHHHHHhCCCCcceEE
Q 013809 336 VGLMLRALGYGSDVHIY 352 (436)
Q Consensus 336 vgl~L~aLGf~~~T~IY 352 (436)
+.++|||||+.++.-||
T Consensus 54 i~ilLrALG~~sd~eI~ 70 (190)
T PF04561_consen 54 IVILLRALGIESDKEII 70 (190)
T ss_dssp HHHHHHHTT--STCHHH
T ss_pred eEEeehhhcCcCccccc
Confidence 77999999998776554
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=29.92 E-value=39 Score=32.65 Aligned_cols=27 Identities=7% Similarity=-0.052 Sum_probs=22.0
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcceEE
Q 013809 326 HGKCPLTPLEVGLMLRALGYGSDVHIY 352 (436)
Q Consensus 326 ~G~CPLTPeEvgl~L~aLGf~~~T~IY 352 (436)
+-..|+|++|...+|+.-||..-..+|
T Consensus 204 ~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 204 NVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred hhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 446789999999999999999655443
No 11
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=26.23 E-value=55 Score=25.50 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.7
Q ss_pred hhccCCCCCCHHHHHHHHHHhCCCC
Q 013809 323 ERRHGKCPLTPLEVGLMLRALGYGS 347 (436)
Q Consensus 323 ~R~~G~CPLTPeEvgl~L~aLGf~~ 347 (436)
.+.-|. .++++|+..+|+.|||+-
T Consensus 12 ~~llG~-~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGL-DLSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCC-CCCHHHHHHHHHHCCCeE
Confidence 345564 599999999999999974
No 12
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=23.60 E-value=85 Score=27.89 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=35.2
Q ss_pred CCHHHHH-HHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCccccccc
Q 013809 331 LTPLEVG-LMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETI 381 (436)
Q Consensus 331 LTPeEvg-l~L~aLGf~~~T~IYlAageiyGg~~~m~~L~~~FPn~~tKe~L 381 (436)
++|--.- .+|..++ +.++.|++...+ |......|+++.|.-+.+++|
T Consensus 80 ~sPCG~Crq~l~e~~-~~~~~v~~~~~~---~~~~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 80 VSPCGACRQVLAEFA-GPDTPIYMTNND---GTYKVYTVGELLPFGFGPSDL 127 (127)
T ss_pred cCccHHHHHHHHHhC-CCCcEEEEECCC---CCEEEEEHHHhCcCcCCcCcC
Confidence 4555543 6788887 678999999887 555667899999988877654
No 13
>PRK10556 hypothetical protein; Provisional
Probab=22.51 E-value=54 Score=29.10 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHhCCCCcc
Q 013809 331 LTPLEVGLMLRALGYGSDV 349 (436)
Q Consensus 331 LTPeEvgl~L~aLGf~~~T 349 (436)
|-|.||+.+|+..||..|.
T Consensus 3 LRPDEVArVLe~aGF~~D~ 21 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDV 21 (111)
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998664
No 14
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=22.21 E-value=1.1e+02 Score=33.72 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=54.6
Q ss_pred CCCcceEEEEeccccCcccchhhHHhhCCCcccc--ccccc----c-ccccccC-ccchhhhhhhhhhcCCCeeeeCCCC
Q 013809 345 YGSDVHIYVASGEVYGGEETLAPLKALFPNFYSK--ETIAS----K-ELEPFSS-FSSRMAALDFIVCDESDIFVTNNNG 416 (436)
Q Consensus 345 f~~~T~IYlAageiyGg~~~m~~L~~~FPn~~tK--e~L~s----~-EL~pF~~-~ss~~AALDyiVc~~SDVFV~t~~G 416 (436)
=.+.++|+||+=.- ..-+-|+++|-+--|. |.+.- . |.+.|.+ .-++.|-.|-+..+-||+.|+|.-+
T Consensus 351 ~~~~kaVlVtSL~~----~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVTS~~S 426 (476)
T PF03254_consen 351 SQKSKAVLVTSLYS----EYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDVLVTSGWS 426 (476)
T ss_pred CCceEEEEEEeCCH----HHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccceEecCCC
Confidence 35667888888652 2346688888554443 33322 2 6666764 3468899999999999999999999
Q ss_pred chhhhhhhh
Q 013809 417 NILGTSQPF 425 (436)
Q Consensus 417 Nma~~v~g~ 425 (436)
+|.-+-||-
T Consensus 427 TFGYVAqgL 435 (476)
T PF03254_consen 427 TFGYVAQGL 435 (476)
T ss_pred CchhHHHhh
Confidence 998877764
No 15
>PRK05578 cytidine deaminase; Validated
Probab=22.11 E-value=88 Score=28.27 Aligned_cols=96 Identities=18% Similarity=0.302 Sum_probs=55.7
Q ss_pred eEEEEeccchhhhhhhcCCCCC------ChHHHHHHHHHHHH----hhhccCCCchhhhccCCCCCCHHHH-HHHHHHhC
Q 013809 276 YIALHLRFEPDMLAFSGCYYGG------GDKERKELGAIRKR----WKTLHISNPDKERRHGKCPLTPLEV-GLMLRALG 344 (436)
Q Consensus 276 fIALHLR~E~DMLAfsgC~~g~------~~~E~~eL~~~R~~----wk~~~~~~~~~~R~~G~CPLTPeEv-gl~L~aLG 344 (436)
-|+-.+|.+ |=-.|.||.-.. .-.|+..+.++=.. .+..-++. +. .-+.+|-=. -.+|..++
T Consensus 25 ~Vgaa~~~~-~G~i~~G~nvEna~~~~~~CAE~~Ai~~av~~G~~~i~~i~vv~----~~--~~~~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 25 PVGAALLTD-DGRIYTGCNIENASYGLTNCAERTAIFKAISEGGGRLVAIACVG----ET--GEPLSPCGRCRQVLAEFG 97 (131)
T ss_pred ceEEEEEeC-CCCEEEEEEeeCccccCCcCHHHHHHHHHHHcCCCceEEEEEEe----cC--CCccCccHHHHHHHHHhC
Confidence 367777775 455555554321 23577776665321 11111111 11 123444332 24566664
Q ss_pred CCCcceEEEEeccccCcccchhhHHhhCCCcccccccc
Q 013809 345 YGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIA 382 (436)
Q Consensus 345 f~~~T~IYlAageiyGg~~~m~~L~~~FPn~~tKe~L~ 382 (436)
+.++.||+...+ |+.....|+++.|.-+++++|+
T Consensus 98 -~~~~~v~l~~~~---~~~~~~~l~eLLP~~f~~~~l~ 131 (131)
T PRK05578 98 -GPDLLVTLVAKD---GPTGEMTLGELLPYAFTPDDLG 131 (131)
T ss_pred -CCCcEEEEEcCC---CCEEEEEHHHhCcCcCChhhcC
Confidence 578999999877 5556688999999999888764
No 16
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=21.67 E-value=1e+02 Score=32.70 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=45.2
Q ss_pred cCChhHHHhhhhhhhhhcce-EEEecccccccc-cCc------hhhhhhc------------ccccccccccchHHHHHH
Q 013809 203 KCNEKCYQNRVLPVLLKRHA-VQLSKFDYRLAN-KLD------TDLQKLR------------CRVNYHALSFTDSIQKMG 262 (436)
Q Consensus 203 ~~s~~~Y~~~ilP~l~k~~V-I~l~~~d~rLa~-~lp------~~iQrLR------------Crvnf~ALrF~p~I~~lg 262 (436)
|-+-.|++++|.|+-.+.|| +.+.+-|+-+.- +|| .++|++. |.-+|++--. .+|-++.
T Consensus 187 ~~nL~yFL~~ViPVAEe~gVkmaiHPDDPP~pi~GLpRIvst~ed~~~ll~~vdSp~NGiTlCtGS~G~~~d-nDl~~mi 265 (362)
T COG1312 187 WENLAYFLKEVIPVAEEVGVKMAIHPDDPPWPIFGLPRIVSTIEDYQRLLEMVDSPYNGITLCTGSLGARAD-NDLPEMI 265 (362)
T ss_pred HHHHHHHHHhhcchHHhcCceEEeCCCCCCccccCcchhcCCHHHHHHHHHhccCccCCEEEeccccccCcc-ccHHHHH
Confidence 34566999999999999998 677888887663 566 4788774 5555554332 4555555
Q ss_pred HHHHHHH
Q 013809 263 EKLVHQM 269 (436)
Q Consensus 263 ~~lV~RL 269 (436)
....+|+
T Consensus 266 r~F~~rI 272 (362)
T COG1312 266 REFASRI 272 (362)
T ss_pred HHHhhhc
Confidence 5555544
No 17
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.06 E-value=76 Score=23.41 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=21.9
Q ss_pred CchhhhccCCCCCCHHHHHHHHHHhCCCC
Q 013809 319 NPDKERRHGKCPLTPLEVGLMLRALGYGS 347 (436)
Q Consensus 319 ~~~~~R~~G~CPLTPeEvgl~L~aLGf~~ 347 (436)
|+..+.+-..| -||+|+..+.+..||.=
T Consensus 16 d~~l~~~l~~~-~~~~e~~~lA~~~Gy~f 43 (49)
T PF07862_consen 16 DPELREQLKAC-QNPEEVVALAREAGYDF 43 (49)
T ss_pred CHHHHHHHHhc-CCHHHHHHHHHHcCCCC
Confidence 55555555668 49999999999999973
No 18
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=20.01 E-value=61 Score=28.97 Aligned_cols=19 Identities=37% Similarity=0.551 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHhCCCCcc
Q 013809 331 LTPLEVGLMLRALGYGSDV 349 (436)
Q Consensus 331 LTPeEvgl~L~aLGf~~~T 349 (436)
|-|.||+.+|+..||..|.
T Consensus 3 lrpdeva~vle~~gf~~d~ 21 (111)
T PF09400_consen 3 LRPDEVARVLEKAGFERDY 21 (111)
T ss_dssp --HHHHHHHHHHTT-EEEE
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998664
No 19
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=20.00 E-value=61 Score=25.73 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=16.7
Q ss_pred hhccCCCCCCHHHHHHHHHHhCCCCc
Q 013809 323 ERRHGKCPLTPLEVGLMLRALGYGSD 348 (436)
Q Consensus 323 ~R~~G~CPLTPeEvgl~L~aLGf~~~ 348 (436)
.+.-|. .++++|+.-+|+.|||.-+
T Consensus 12 ~~~lG~-~i~~~~i~~~L~~lg~~~~ 36 (70)
T PF03484_consen 12 NKLLGI-DISPEEIIKILKRLGFKVE 36 (70)
T ss_dssp HHHHTS----HHHHHHHHHHTT-EEE
T ss_pred HHHhCC-CCCHHHHHHHHHHCCCEEE
Confidence 345565 4999999999999999843
Done!