Query 013809
Match_columns 436
No_of_seqs 171 out of 377
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 17:30:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 4.1E-14 1.4E-18 142.9 16.1 294 111-431 20-381 (408)
2 3zy2_A Putative GDP-fucose pro 99.3 3E-11 1E-15 121.9 17.0 277 111-430 6-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.9 0.0021 7.2E-08 67.9 22.8 252 112-429 144-420 (526)
4 2hhc_A NODZ, nodulation fucosy 97.7 0.00081 2.8E-08 65.4 15.0 263 112-423 3-294 (330)
5 3l32_A Phosphoprotein; antipar 35.9 17 0.00058 26.6 1.8 22 251-272 2-23 (45)
6 1l2m_A REP protein; A+B fold, 27.1 62 0.0021 27.9 4.2 28 328-356 17-44 (118)
7 2eqr_A N-COR1, N-COR, nuclear 25.3 47 0.0016 24.7 2.8 20 325-344 9-28 (61)
8 2g7j_A Putative cytoplasmic pr 20.8 36 0.0012 29.4 1.5 19 331-349 3-21 (124)
9 3i5g_C Myosin catalytic light 18.5 71 0.0024 27.0 2.9 18 330-347 27-44 (159)
10 1e2t_A NAT, N-hydroxyarylamine 18.5 72 0.0025 30.6 3.3 31 323-361 66-100 (284)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.56 E-value=4.1e-14 Score=142.88 Aligned_cols=294 Identities=18% Similarity=0.226 Sum_probs=160.6
Q ss_pred CCCcEEEEEe-CC-ChhhHHHHHHHHHHHHHHcCCc----EEeccCCCCccccCCC------CCcccccHHHHHHHcccc
Q 013809 111 HSNRYLAIVT-SG-GLNQQRTGIIDAVVAARILNAT----LVIPKLDQKSFWKDAS------DFSEIFDVDRFISVLSKD 178 (436)
Q Consensus 111 ~snGYL~V~~-nG-GLNqqR~~IcDaVavARiLNAT----LVlP~Ld~~s~W~D~S------~F~dIFDvdhFI~sL~~d 178 (436)
..++||+-.. .| |.|+||...-.|.+.|+.||.| ||||-...-.-|+-.+ .|++.||++.+ +..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hhh
Confidence 4689999886 45 8999999999999999999999 9999665433454432 69999999864 344
Q ss_pred ceec------ccC-Ccc---------cCCC-----C-CCcccc-----CCC-cCC------hhH----------------
Q 013809 179 VKII------KQI-PRK---------GGKS-----L-TPYHMR-----VPR-KCN------EKC---------------- 208 (436)
Q Consensus 179 VrIV------k~L-P~~---------~~~~-----~-~~~~~~-----~p~-~~s------~~~---------------- 208 (436)
|+|| +++ |.. .... . .....+ .+. ... +-|
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~ 175 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQ 175 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEEC
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEe
Confidence 5554 111 100 0000 0 000000 000 000 000
Q ss_pred -HHhhhhhhhhhcc---eEEEecccccccccC-chhhhhhcccccccccccchHHHHHHHHHHHHHHhcCCceEEEEecc
Q 013809 209 -YQNRVLPVLLKRH---AVQLSKFDYRLANKL-DTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRF 283 (436)
Q Consensus 209 -Y~~~ilP~l~k~~---VI~l~~~d~rLa~~l-p~~iQrLRCrvnf~ALrF~p~I~~lg~~lV~RLR~~s~pfIALHLR~ 283 (436)
....+-|.+.+.. -+-+..+...|.+.. ..+...+| ..|+|.+.|.++|++.++..-. ++|+++|+|.
T Consensus 176 ~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~r~ 248 (408)
T 4ap5_A 176 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLN--STDDADRIPF 248 (408)
T ss_dssp SBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTCCC
T ss_pred ecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhC--cccceeeccc
Confidence 0011122222211 111222222232221 12222322 3799999999999998876543 4677777777
Q ss_pred chhhhhhhcCCCCCChHHHHHHHHHHHHhhhccCCCchhhhccCCCCCCHHHHH-HHHHHhCCCCcceEEEEeccccCcc
Q 013809 284 EPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGKCPLTPLEVG-LMLRALGYGSDVHIYVASGEVYGGE 362 (436)
Q Consensus 284 E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~CPLTPeEvg-l~L~aLGf~~~T~IYlAageiyGg~ 362 (436)
+.|+... |.......-. .....+.-..+-......|=.+-++++ .+.+.+.=-+-+.||||+-+ .+
T Consensus 249 ~~dw~~~--~~~~~~~~~~--------~y~~~H~Rr~d~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~---~~ 315 (408)
T 4ap5_A 249 QEDWMKM--KVKLGSALGG--------PYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA---VR 315 (408)
T ss_dssp CSSGGGC--CCCTTCBCCE--------EEEEEEECCTTTTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC---CH
T ss_pred chhHhhh--hcccccccCC--------CccccccccccchhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC---ch
Confidence 7666553 3322110000 000000000000111112322223332 22222221234479999976 35
Q ss_pred cchhhHHhhCCCccccccccccccccccCccchhhhhhhhhhcCCCeeeeCCCCchhhhhhhhhhhhhh
Q 013809 363 ETLAPLKALFPNFYSKETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNGNILGTSQPFVQMLKS 431 (436)
Q Consensus 363 ~~m~~L~~~FPn~~tKe~L~s~EL~pF~~~ss~~AALDyiVc~~SDVFV~t~~GNma~~v~g~r~~~~~ 431 (436)
..+..|++.+|.++.-..-.. ++.++. ....|.||-+||.+||+||+|..++|+..|+-.|.+++-
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~ 381 (408)
T 4ap5_A 316 KEYEELKKLLPEMVRFEPTWE-ELELYK--DGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGL 381 (408)
T ss_dssp HHHHHHHHHCTTEECCCCCHH-HHHHHH--HHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTB
T ss_pred hHHHHHHHhCCCcEEecCcch-hhhccC--cchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCC
Confidence 567889999987754322111 444442 346799999999999999999999999999999998873
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.32 E-value=3e-11 Score=121.89 Aligned_cols=277 Identities=16% Similarity=0.218 Sum_probs=160.3
Q ss_pred CCCcEEEEE-eCCChhhHHHHHHHHHHHHHHcCCcEEeccCCCCccccCCC---CCcccccHHH------------HHHH
Q 013809 111 HSNRYLAIV-TSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDAS---DFSEIFDVDR------------FISV 174 (436)
Q Consensus 111 ~snGYL~V~-~nGGLNqqR~~IcDaVavARiLNATLVlP~Ld~~s~W~D~S---~F~dIFDvdh------------FI~s 174 (436)
.+||||+-= |-|-+.||-....-+.+-|+.||.|||||-+-.-.. ..+ .|++-|+++. ||+.
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~--~~~~~vpf~~yF~v~~l~~yhrvi~me~Fm~~ 83 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH--PETKMIPFEFLFQVGTVAKYTRVVTMQEFTKK 83 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS--SSCEEECHHHHBCHHHHTTTSCEECHHHHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC--CcccccchhheeecchhhhhceeeeHHHHHHH
Confidence 469999885 999999999999999999999999999997653222 114 5888888765 3333
Q ss_pred ccccc-------------ee-------cccCCcccCCCCCCc-------cccC-------C--C--cCChhHHHhhhhhh
Q 013809 175 LSKDV-------------KI-------IKQIPRKGGKSLTPY-------HMRV-------P--R--KCNEKCYQNRVLPV 216 (436)
Q Consensus 175 L~~dV-------------rI-------Vk~LP~~~~~~~~~~-------~~~~-------p--~--~~s~~~Y~~~ilP~ 216 (436)
|...| +- -+.+|..- .+|+ .+.- | . .-+...|.++=...
T Consensus 84 lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~---GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~ 160 (362)
T 3zy2_A 84 IMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKE---GNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEK 160 (362)
T ss_dssp THHHHSCGGGCEEEESSCBC-------CCBCCTTS---STTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHH
T ss_pred hccccCCcccceEeeccccccccCCCCCCCCCCCC---CCCCCcchhccccccccceeccCccccccccchhHHHHHHHh
Confidence 33111 00 01122110 0110 0000 0 0 00000111111111
Q ss_pred --hhhcceEEEecccccccc-cCchhhhhhcccccccccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcC
Q 013809 217 --LLKRHAVQLSKFDYRLAN-KLDTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGC 293 (436)
Q Consensus 217 --l~k~~VI~l~~~d~rLa~-~lp~~iQrLRCrvnf~ALrF~p~I~~lg~~lV~RLR~~s~pfIALHLR~E~DMLAfsgC 293 (436)
-.+|-|+.|++.-..-.- .-.-.||| -|+++++|.+.|++.++.-- .+||||+|||-=.|+.-. |
T Consensus 161 ~p~~~~pVlAf~gaPa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L--~rpyVgIHLR~G~DW~~a--C 228 (362)
T 3zy2_A 161 FPSEEYPVLAFSSAPAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL--AKPFVAVHLRNDADWVRV--C 228 (362)
T ss_dssp SCTTTCSEEEESSCSSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC--CSSEEEEEECCCHHHHHH--H
T ss_pred CCcccCceEeecCCCCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc--CCCeEEEEEecCCcHHHH--H
Confidence 125577777764222100 00124444 48999999999999888743 359999999999999877 8
Q ss_pred CCCCChH-----HHHHHHHHHHHhhhccCCCchhhhccCCCCCCHHH----HHHHHHHhCCCCcceEEEEeccccCcccc
Q 013809 294 YYGGGDK-----ERKELGAIRKRWKTLHISNPDKERRHGKCPLTPLE----VGLMLRALGYGSDVHIYVASGEVYGGEET 364 (436)
Q Consensus 294 ~~g~~~~-----E~~eL~~~R~~wk~~~~~~~~~~R~~G~CPLTPeE----vgl~L~aLGf~~~T~IYlAageiyGg~~~ 364 (436)
.+--..+ +.-..- -|.... ..=....|==+.++ +..+++.++.+ .||||+-. ...
T Consensus 229 ~hlk~~~~~~lfaSPQC~----Gy~~~~-----~~lt~emClPSle~I~rqIk~~vk~~~lk---sVFIATDa----~~~ 292 (362)
T 3zy2_A 229 EHIDTTTNRPLFASEQCL----GEGHHL-----GTLTKEICSPSKQQILEQIVEKVGSIGAK---SVFVASDK----DHM 292 (362)
T ss_dssp HTCCTTTCCCCTTTHHHH----CGGGTT-----CCCCHHHHSCCHHHHHHHHHHHHHHHTCS---EEEEEESS----CCC
T ss_pred hhhccccCcccccCCccc----CCcccC-----cccchhccCCCHHHHHHHHHHHHHhcCCc---EEEEecCC----HHH
Confidence 7622100 000000 010000 00001124223434 44555666644 99999976 346
Q ss_pred hhhHHhhCCCccccccccccccccccCccchhhhhhhhhhcCCCeeeeCCCCchhhhhhhhhhhhh
Q 013809 365 LAPLKALFPNFYSKETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNGNILGTSQPFVQMLK 430 (436)
Q Consensus 365 m~~L~~~FPn~~tKe~L~s~EL~pF~~~ss~~AALDyiVc~~SDVFV~t~~GNma~~v~g~r~~~~ 430 (436)
++-|+++|+.. .+----+.| -.|+||.+||.+||+||+|..++|.-.|+=.|..++
T Consensus 293 ~~ELk~~L~~~----~v~vv~~~p------e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 293 IDEINEALKPY----EIEAHRQEP------DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHHHHHHHGGG----TCCEECCSS------CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhcc----CceEEEeCC------chhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 78888887642 110001112 179999999999999999999999999999998776
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.85 E-value=0.0021 Score=67.90 Aligned_cols=252 Identities=16% Similarity=0.192 Sum_probs=141.7
Q ss_pred CCcEEEEEe--CCChhhHHHHHHHHHHHHHHcCCcEEeccCCCCccccCC-CCCcccccHHHHHHHccccceecccCCcc
Q 013809 112 SNRYLAIVT--SGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDA-SDFSEIFDVDRFISVLSKDVKIIKQIPRK 188 (436)
Q Consensus 112 snGYL~V~~--nGGLNqqR~~IcDaVavARiLNATLVlP~Ld~~s~W~D~-S~F~dIFDvdhFI~sL~~dVrIVk~LP~~ 188 (436)
+..||+... ..|+..+-..++-|..+|..+|.|||+-.=. |.-. ..|+++|+. + ...+.- . |..
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~----s~~C~~--~-~~~ 210 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--V----SETCTD--R-SGI 210 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--S----CSSCCC--C-CCS
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--c----CccccC--C-Ccc
Confidence 358999886 5799999999999999999999999995432 3322 467788774 1 111110 0 100
Q ss_pred cCCCCCCccccCCCcCChhHHHhhhhhhhhhcceEEEecccc--c---ccc-cCchh----hhhhcc--------ccccc
Q 013809 189 GGKSLTPYHMRVPRKCNEKCYQNRVLPVLLKRHAVQLSKFDY--R---LAN-KLDTD----LQKLRC--------RVNYH 250 (436)
Q Consensus 189 ~~~~~~~~~~~~p~~~s~~~Y~~~ilP~l~k~~VI~l~~~d~--r---La~-~lp~~----iQrLRC--------rvnf~ 250 (436)
....|-.... -..+.||.+...++ + ... .+|.+ ++++.- .+.-.
T Consensus 211 ----------~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~y 272 (526)
T 2de0_X 211 ----------STGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKY 272 (526)
T ss_dssp ----------CCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ----------ccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHH
Confidence 0000111000 12344554332221 1 111 23433 333321 01111
Q ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcCCCCCChHHHHHHHHHHHHhhhccCCCchhhhccCCCC
Q 013809 251 ALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGKCP 330 (436)
Q Consensus 251 ALrF~p~I~~lg~~lV~RLR~~s~pfIALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~CP 330 (436)
-+|++++|++.-+++.+.+.- ++|.|++|.|-= |-.+.. ....+.+ +-+..+...+.
T Consensus 273 l~rP~~~i~~~I~~~~~~l~~-~~piVGVHIRrG-Dk~~~E---~~~~~~~-~Y~~~v~~~~~----------------- 329 (526)
T 2de0_X 273 LIRPQPWLEKEIEEATKKLGF-KHPVIGVHVRRT-DKVGTE---AAFHPIE-EYMVHVEEHFQ----------------- 329 (526)
T ss_dssp HTCBCHHHHHHHHHHHHHHTC-CSSEEEEEECCC------C---CCSCSHH-HHHHHHHHHHH-----------------
T ss_pred HcCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeCC-CCCccc---cccCCHH-HHHHHHHHHHH-----------------
Confidence 488999999999988888754 689999999963 443211 1111111 11111111111
Q ss_pred CCHHHHHHHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCc--ccccccccc-cc-ccccCccchhhhhhhhhhcC
Q 013809 331 LTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNF--YSKETIASK-EL-EPFSSFSSRMAALDFIVCDE 406 (436)
Q Consensus 331 LTPeEvgl~L~aLGf~~~T~IYlAageiyGg~~~m~~L~~~FPn~--~tKe~L~s~-EL-~pF~~~ss~~AALDyiVc~~ 406 (436)
.|+....+..+.||||+.+ ....+-+++.||+. ++-...... .+ ..+...+-..+.+|.++.++
T Consensus 330 --------~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~ 397 (526)
T 2de0_X 330 --------LLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQ 397 (526)
T ss_dssp --------HHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHH
T ss_pred --------HHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhc
Confidence 1222245778899999998 36677888889985 322222111 11 11111222578999999999
Q ss_pred CCeeeeCCCCchhhhhhhhhhhh
Q 013809 407 SDIFVTNNNGNILGTSQPFVQML 429 (436)
Q Consensus 407 SDVFV~t~~GNma~~v~g~r~~~ 429 (436)
||+||+|.++|+++++...++..
T Consensus 398 cd~~Vgt~sS~~srla~~l~~~~ 420 (526)
T 2de0_X 398 ADFLVCTFSSQVCRVAYEIMQTL 420 (526)
T ss_dssp SSEEEECTTSHHHHHHHHHHTTS
T ss_pred CCeeecCCCCHHHHHHHHHhcCc
Confidence 99999999999999988776643
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.67 E-value=0.00081 Score=65.39 Aligned_cols=263 Identities=14% Similarity=0.159 Sum_probs=126.8
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHHHHHHcCCcEEeccCCCCccccCCCCCcccccHHHHHHHccc--cceeccc-CCcc
Q 013809 112 SNRYLAIVTSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDASDFSEIFDVDRFISVLSK--DVKIIKQ-IPRK 188 (436)
Q Consensus 112 snGYL~V~~nGGLNqqR~~IcDaVavARiLNATLVlP~Ld~~s~W~D~S~F~dIFDvdhFI~sL~~--dVrIVk~-LP~~ 188 (436)
+.+||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.| .-.|. ...+ ...+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 4679999999999999999999999999999998886443 23322 2455566 22232 1110 0000000 0110
Q ss_pred cCCCCCCccccCCCcCC-h---hHH--Hhhhhh-------hhh--hc-ceEEEecccccccccCchhhhhhccccccccc
Q 013809 189 GGKSLTPYHMRVPRKCN-E---KCY--QNRVLP-------VLL--KR-HAVQLSKFDYRLANKLDTDLQKLRCRVNYHAL 252 (436)
Q Consensus 189 ~~~~~~~~~~~~p~~~s-~---~~Y--~~~ilP-------~l~--k~-~VI~l~~~d~rLa~~lp~~iQrLRCrvnf~AL 252 (436)
. .. ..+. .|..+. . ..| .+++.| ++. .+ ....+.+. ..+-...-.+ .-+.-|.-|
T Consensus 78 ~-~~-~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~w~~~~~----~~~~i~~yl 148 (330)
T 2hhc_A 78 L-SF-PGPF--FPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCD-ACLMWRCSEE----AERLIFRNI 148 (330)
T ss_dssp C-CC-CSSE--ESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEEC-SCCTTSSCHH----HHHHHHHHS
T ss_pred c-cC-CCCc--CchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcc-cccccchhhh----hHHHHHhcC
Confidence 0 00 0000 010100 0 011 122221 111 11 00112210 0010011111 111224678
Q ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcCCCCCChHHHHHHHHHHHHhhhccCCCchhhhccCCCCCC
Q 013809 253 SFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGKCPLT 332 (436)
Q Consensus 253 rF~p~I~~lg~~lV~RLR~~s~pfIALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~CPLT 332 (436)
+++++|++..+++.+.+-. +.++|++|.|.=.+. ..|.++.. |.+. .||
T Consensus 149 ~p~~~i~~~i~~~~~~~~~-~~~~VGVHIRrgD~~---~~~~~~~~-------------~~~~------------~~~-- 197 (330)
T 2hhc_A 149 KLRSEIRARIDALYEEHFS-GHSIIGVHVRHGNGE---DIMEHAPY-------------WADS------------ELA-- 197 (330)
T ss_dssp CBCHHHHHHHHHHHHHHTT-TSEEEEEEECC----------------------------CHHH------------HHH--
T ss_pred CccHHHHHHHHHHHHHhcc-CCceEEEEEecCCCC---cccccCcc-------------hHHH------------hHH--
Confidence 9999999999888765422 369999999964221 12322110 1100 000
Q ss_pred HHHHHHHHHHh-C-CC-CcceEEEEeccccCcccchhhHHhhCCCccccc-ccccc---ccc-cccC-ccchhhhhhhhh
Q 013809 333 PLEVGLMLRAL-G-YG-SDVHIYVASGEVYGGEETLAPLKALFPNFYSKE-TIASK---ELE-PFSS-FSSRMAALDFIV 403 (436)
Q Consensus 333 PeEvgl~L~aL-G-f~-~~T~IYlAageiyGg~~~m~~L~~~FPn~~tKe-~L~s~---EL~-pF~~-~ss~~AALDyiV 403 (436)
-++.-.-++.+ . .+ .++.||||+-+. .-++-|++.||++.+-. .+... .+. +..+ ...+.+.+|.+.
T Consensus 198 l~~~~~~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~L 273 (330)
T 2hhc_A 198 LHQVCMAIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYL 273 (330)
T ss_dssp HHHHHHHHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHH
Confidence 11111111111 0 12 467999999985 46778999999854321 11100 000 0000 124568899999
Q ss_pred hcCCCeee-eCCCCchhhhhh
Q 013809 404 CDESDIFV-TNNNGNILGTSQ 423 (436)
Q Consensus 404 c~~SDVFV-~t~~GNma~~v~ 423 (436)
.+++|.+| .+..++|+-..+
T Consensus 274 LS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 274 LARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HTTCSEEEEESTTCGGGHHHH
T ss_pred HHcCCeeEECCCCCCHHHHHH
Confidence 99999999 555888877665
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=35.93 E-value=17 Score=26.63 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=18.5
Q ss_pred ccccchHHHHHHHHHHHHHHhc
Q 013809 251 ALSFTDSIQKMGEKLVHQMRMK 272 (436)
Q Consensus 251 ALrF~p~I~~lg~~lV~RLR~~ 272 (436)
++-|+.=+.++|.++|.||++-
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtG 23 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSG 23 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHHHHHHHHHcc
Confidence 4557778999999999999973
No 6
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=27.05 E-value=62 Score=27.87 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEEec
Q 013809 328 KCPLTPLEVGLMLRALGYGSDVHIYVASG 356 (436)
Q Consensus 328 ~CPLTPeEvgl~L~aLGf~~~T~IYlAag 356 (436)
.||||+||+...|+.|--+.+ ..||...
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~ 44 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeeh
Confidence 799999999999999986644 4455444
No 7
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.32 E-value=47 Score=24.74 Aligned_cols=20 Identities=15% Similarity=-0.079 Sum_probs=17.4
Q ss_pred ccCCCCCCHHHHHHHHHHhC
Q 013809 325 RHGKCPLTPLEVGLMLRALG 344 (436)
Q Consensus 325 ~~G~CPLTPeEvgl~L~aLG 344 (436)
++...|.|+||..+|++++-
T Consensus 9 r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHH
Confidence 35778999999999999885
No 8
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=20.78 E-value=36 Score=29.42 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHhCCCCcc
Q 013809 331 LTPLEVGLMLRALGYGSDV 349 (436)
Q Consensus 331 LTPeEvgl~L~aLGf~~~T 349 (436)
|-|.||+.+|+..||..|.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998653
No 9
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=18.52 E-value=71 Score=26.97 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 013809 330 PLTPLEVGLMLRALGYGS 347 (436)
Q Consensus 330 PLTPeEvgl~L~aLGf~~ 347 (436)
-++.+|.+.+|++||+..
T Consensus 27 ~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 27 DVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CEEGGGHHHHHHHTTCCC
T ss_pred eECHHHHHHHHHHcCCCC
Confidence 378899999999999864
No 10
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=18.51 E-value=72 Score=30.59 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=24.0
Q ss_pred hhccCCCCCCHHHH----HHHHHHhCCCCcceEEEEeccccCc
Q 013809 323 ERRHGKCPLTPLEV----GLMLRALGYGSDVHIYVASGEVYGG 361 (436)
Q Consensus 323 ~R~~G~CPLTPeEv----gl~L~aLGf~~~T~IYlAageiyGg 361 (436)
+|+.|.| -|. +.+|++|||+ +|+.+|.+|.+
T Consensus 66 ~~RGGyC----~ElN~Lf~~~L~~LGF~----V~~~~~rV~~~ 100 (284)
T 1e2t_A 66 ARRGGYC----FELNGLFERALRDIGFN----VRSLLGRVILS 100 (284)
T ss_dssp TCCCBCH----HHHHHHHHHHHHHTTCC----EEEEEEEECTT
T ss_pred CCCcEEh----HHHHHHHHHHHHHCCCe----EEEEEEEEecC
Confidence 6889999 663 5689999997 77777777643
Done!