Query 013809
Match_columns 436
No_of_seqs 171 out of 377
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 17:30:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013809.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013809hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 40.9 13 0.00094 30.2 4.3 28 328-356 17-44 (118)
2 d2ihoa2 d.3.1.18 (A:156-293) A 34.8 2.5 0.00018 35.1 -1.2 35 145-179 32-71 (138)
3 d1vjna_ d.157.1.4 (A:) Hypothe 26.3 33 0.0024 28.8 4.8 54 115-177 130-184 (209)
4 d1oqya2 a.5.2.1 (A:317-360) DN 24.4 6 0.00044 27.2 -0.5 26 332-357 1-30 (44)
5 d2gh1a1 c.66.1.49 (A:13-293) M 22.3 21 0.0015 31.2 2.7 91 247-347 99-189 (281)
6 d2g7ja1 d.198.5.1 (A:1-112) Pu 22.2 18 0.0013 28.7 1.9 18 331-348 3-20 (112)
7 d1f54a_ a.39.1.5 (A:) Calmodul 19.9 50 0.0036 23.0 3.9 17 331-347 27-43 (77)
8 d2fr5a1 c.97.1.1 (A:11-146) mo 18.6 32 0.0023 27.7 2.9 99 276-383 27-134 (136)
9 d1im8a_ c.66.1.14 (A:) Hypothe 18.1 65 0.0047 26.4 4.9 92 244-348 110-209 (225)
10 d2bsza1 d.3.1.5 (A:6-275) Aryl 18.0 31 0.0022 30.5 2.8 31 323-361 62-96 (270)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=40.87 E-value=13 Score=30.18 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEEec
Q 013809 328 KCPLTPLEVGLMLRALGYGSDVHIYVASG 356 (436)
Q Consensus 328 ~CPLTPeEvgl~L~aLGf~~~T~IYlAag 356 (436)
+|||||||+...|+.|--+.+. .||..+
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~ 44 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEc
Confidence 6999999999999999776554 455543
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=34.80 E-value=2.5 Score=35.13 Aligned_cols=35 Identities=31% Similarity=0.586 Sum_probs=30.2
Q ss_pred EEeccCCCCccccCCC-----CCcccccHHHHHHHccccc
Q 013809 145 LVIPKLDQKSFWKDAS-----DFSEIFDVDRFISVLSKDV 179 (436)
Q Consensus 145 LVlP~Ld~~s~W~D~S-----~F~dIFDvdhFI~sL~~dV 179 (436)
||||.-.-++.|+++- -=++|||-|.|--..+..|
T Consensus 32 LVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 32 LVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp ECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 8999999999999973 5679999999988877664
No 3
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=26.33 E-value=33 Score=28.83 Aligned_cols=54 Identities=28% Similarity=0.491 Sum_probs=34.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHcCCcEEeccCCCCccccC-CCCCcccccHHHHHHHccc
Q 013809 115 YLAIVTSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKD-ASDFSEIFDVDRFISVLSK 177 (436)
Q Consensus 115 YL~V~~nGGLNqqR~~IcDaVavARiLNATLVlP~Ld~~s~W~D-~S~F~dIFDvdhFI~sL~~ 177 (436)
.+.+.+.|.. ...--+|+.+|+.|++-.|||- -|+. ...| ++=.+|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~-----H~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPM-----HYKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEE-----SCCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEe-----ccCCccccc-CcCCHHHHHHHhhh
Confidence 4555554432 2346789999999999999994 2432 2232 34557888887664
No 4
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.40 E-value=6 Score=27.22 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=18.7
Q ss_pred CHHHHH--HHHHHhCCCCcc--eEEEEecc
Q 013809 332 TPLEVG--LMLRALGYGSDV--HIYVASGE 357 (436)
Q Consensus 332 TPeEvg--l~L~aLGf~~~T--~IYlAage 357 (436)
||||.. .=|.+|||+++. ++|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 566654 347899999987 46887765
No 5
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=22.30 E-value=21 Score=31.15 Aligned_cols=91 Identities=20% Similarity=0.341 Sum_probs=54.1
Q ss_pred ccccccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcCCCCCChHHHHHHHHHHHHhhhccCCCchhhhcc
Q 013809 247 VNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRH 326 (436)
Q Consensus 247 vnf~ALrF~p~I~~lg~~lV~RLR~~s~pfIALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~ 326 (436)
++.++|...++.+++-+++.+.|+. +|.++....-+..++..+ ...+....+...+...++.|. ...+..
T Consensus 99 ~~~~~l~~~~d~~~~l~~~~~~Lkp-gG~lii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 168 (281)
T d2gh1a1 99 ICHAFLLHMTTPETMLQKMIHSVKK-GGKIICFEPHWISNMASY--LLDGEKQSEFIQLGVLQKLFE-------SDTQRN 168 (281)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEE-EEEEEEEECCHHHHHTSE--EETTSCHHHHCCHHHHHHHHH-------HHHHTT
T ss_pred EEehhhhcCCCHHHHHHHHHHHcCc-CcEEEEEECCccccchhh--ccCchhhhhhhhHHHHHHHHH-------HHHHHc
Confidence 4445666667777777777777766 467777655544455544 223332222222222222221 123456
Q ss_pred CCCCCCHHHHHHHHHHhCCCC
Q 013809 327 GKCPLTPLEVGLMLRALGYGS 347 (436)
Q Consensus 327 G~CPLTPeEvgl~L~aLGf~~ 347 (436)
|..|....++..+|+..||.+
T Consensus 169 ~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 169 GKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp CCCTTGGGTHHHHHHHTTCEE
T ss_pred CCCCCHHHHHHHHHHHcCCeE
Confidence 777777888999999999984
No 6
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=22.16 E-value=18 Score=28.72 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 013809 331 LTPLEVGLMLRALGYGSD 348 (436)
Q Consensus 331 LTPeEvgl~L~aLGf~~~ 348 (436)
|-|.||+.+|+..||..|
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999855
No 7
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.87 E-value=50 Score=22.98 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHhCCCC
Q 013809 331 LTPLEVGLMLRALGYGS 347 (436)
Q Consensus 331 LTPeEvgl~L~aLGf~~ 347 (436)
++++|...+|+.+|+..
T Consensus 27 I~~~el~~~l~~~g~~~ 43 (77)
T d1f54a_ 27 ISSSELATVMRSLGLSP 43 (77)
T ss_dssp EEHHHHHHHHHHHTCCC
T ss_pred EChHHHHHHHHHhCCCC
Confidence 78888888888888764
No 8
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.65 E-value=32 Score=27.74 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=56.5
Q ss_pred eEEEEeccchhhhhhhcCCCCC------ChHHHHHHHHHHHH--hhhccCCCchhhhccCCCCCCHHHH-HHHHHHhCCC
Q 013809 276 YIALHLRFEPDMLAFSGCYYGG------GDKERKELGAIRKR--WKTLHISNPDKERRHGKCPLTPLEV-GLMLRALGYG 346 (436)
Q Consensus 276 fIALHLR~E~DMLAfsgC~~g~------~~~E~~eL~~~R~~--wk~~~~~~~~~~R~~G~CPLTPeEv-gl~L~aLGf~ 346 (436)
-|+-=++.+ |=-.|+||.-.. --.|+-.+.++-.. .+...++-.. ...+. +++|=-. --+|.-+ .
T Consensus 27 ~VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~~~~~~~~~~--~~~~~-~~~PCG~CRQ~l~E~--~ 100 (136)
T d2fr5a1 27 PVGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISS--DLQEE-FISPCGACRQVMREF--G 100 (136)
T ss_dssp CEEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEE--SCSSS-CCCCCHHHHHHHHHT--C
T ss_pred cEEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCccEEEEEeec--ccCCC-CCCcchhhhHHHHhh--C
Confidence 366666765 556677765322 23577777766542 1111110000 00111 1233211 2455554 5
Q ss_pred CcceEEEEeccccCcccchhhHHhhCCCccccccccc
Q 013809 347 SDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIAS 383 (436)
Q Consensus 347 ~~T~IYlAageiyGg~~~m~~L~~~FPn~~tKe~L~s 383 (436)
.++.||+...+ |+.....|+++.|.-+++++|-.
T Consensus 101 ~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~~ 134 (136)
T d2fr5a1 101 TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQK 134 (136)
T ss_dssp SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGTC
T ss_pred CCceEEEECCC---CCEEEeEHHHhCcCCCChHHhCc
Confidence 78899998876 66667789999999999998853
No 9
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}
Probab=18.12 E-value=65 Score=26.36 Aligned_cols=92 Identities=10% Similarity=0.004 Sum_probs=49.7
Q ss_pred cccccccccccc--hHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcCCCCCChHHHHHHHHHHHHhhhccCCCc-
Q 013809 244 RCRVNYHALSFT--DSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNP- 320 (436)
Q Consensus 244 RCrvnf~ALrF~--p~I~~lg~~lV~RLR~~s~pfIALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~- 320 (436)
-+-++..+|.+. ++.+++-+++.+-|+.. |.++-.+.-...| ......+..+...|+.....++
T Consensus 110 d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
T d1im8a_ 110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSEKFRFED------------TKINHLLIDLHHQFKRANGYSEL 176 (225)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEEECCCSS------------HHHHHHHHHHHHHHHHHTTGGGS
T ss_pred eeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeeccccccccc------------chhhhHHHHHHHHHHHHcCCCHH
Confidence 344556667776 47778888888888764 6777654332111 1111122222222333211111
Q ss_pred -----hhhhccCCCCCCHHHHHHHHHHhCCCCc
Q 013809 321 -----DKERRHGKCPLTPLEVGLMLRALGYGSD 348 (436)
Q Consensus 321 -----~~~R~~G~CPLTPeEvgl~L~aLGf~~~ 348 (436)
........=|.|++|..-+|+..||.+=
T Consensus 177 ~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v 209 (225)
T d1im8a_ 177 EVSQKRTALENVMRTDSIETHKVRLKNVGFSQV 209 (225)
T ss_dssp TTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHhhcccCCCCHHHHHHHHHHcCCCce
Confidence 1111122347899999999999999743
No 10
>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium loti [TaxId: 381]}
Probab=18.04 E-value=31 Score=30.52 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=23.3
Q ss_pred hhccCCCCCCHHH----HHHHHHHhCCCCcceEEEEeccccCc
Q 013809 323 ERRHGKCPLTPLE----VGLMLRALGYGSDVHIYVASGEVYGG 361 (436)
Q Consensus 323 ~R~~G~CPLTPeE----vgl~L~aLGf~~~T~IYlAageiyGg 361 (436)
+++.|.| -| -+.+|++|||+ +|+.+|.++.+
T Consensus 62 ~~rGG~C----~E~N~lf~~lL~~LGF~----v~~~~~rV~~~ 96 (270)
T d2bsza1 62 GGRGGYC----FEHNLLFMHALKALGFE----VGGLAARVLWG 96 (270)
T ss_dssp SCCCBCH----HHHHHHHHHHHHHHTCE----EEEEEEEECSS
T ss_pred cCCcccc----hhhhHHHHHHHHHcCCc----eEEEEEEEecC
Confidence 5779999 55 34789999995 77777777643
Done!