BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013810
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 209/382 (54%), Gaps = 42/382 (10%)
Query: 52 SGLGPT----------KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP 101
SG GPT + ++KP V++LGSGW +K IDT Y+V +SPR++ +FTP
Sbjct: 22 SGAGPTSFKTMKVIDPQHSDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTP 81
Query: 102 LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRT 161
LL S VGT++ +S+ EPI A+ ++ ++ + I+ D + V ++++ +
Sbjct: 82 LLPSAPVGTVDEKSIIEPIVNF--ALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQL 139
Query: 162 LEPWKF---------KISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLL 212
+P +I YD L+ A+GAE +TFGI GV + FL+E+ ++ EIRR
Sbjct: 140 YQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAA 199
Query: 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL 272
NL +++ + E+ RLL VVVGGGPTGVE +GEL D++ +D+R+ + + + + L
Sbjct: 200 NLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHL 259
Query: 273 IEANEI-LSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTE--------V 322
+EA I L+ F+ +L YA + L + +++ +R V V+ ++L+ E +
Sbjct: 260 VEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETI 319
Query: 323 PYGLLVWSTGVGPSTLVKSL--DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLES 378
PYG L+W+TG ++ L +P+ + G ++++L+V ++FA+GD +
Sbjct: 320 PYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF---- 375
Query: 379 TGKTVLPALAQVSYEQLHLFQK 400
LP AQV++++ K
Sbjct: 376 ---AGLPPTAQVAHQEAEYLAK 394
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 203/364 (55%), Gaps = 32/364 (8%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
++KP V++LGSGW +K IDT Y+V +SPR++ +FTPLL S VGT++ +S+ EP
Sbjct: 9 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEP 68
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKF---------KIS 170
I A+ ++ ++ + I+ D + V ++++ + +P +I
Sbjct: 69 IVNF--ALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIK 126
Query: 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
YD L+ A+GAE +TFGI GV + FL+E+ ++ EIRR NL +++ + E+ RL
Sbjct: 127 YDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRL 186
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-LSSFDDRLRHY 289
L VVVGGGPTGVE +GEL D++ +D+R+ + + + + L+EA I L+ F+ +L Y
Sbjct: 187 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSY 246
Query: 290 ATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTE--------VPYGLLVWSTGVGPSTLVK 340
A + L + +++ +R V V+ ++L+ E +PYG L+W+TG ++
Sbjct: 247 AQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVIT 306
Query: 341 SL--DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLH 396
L +P+ + G ++++L+V ++FA+GD + LP AQV++++
Sbjct: 307 DLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQVAHQEAE 359
Query: 397 LFQK 400
K
Sbjct: 360 YLAK 363
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 127/310 (40%), Gaps = 44/310 (14%)
Query: 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDN 147
+ +S R + FTP +G +F ++ P+A + P + E F ID D
Sbjct: 30 ITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIE----FINEKAESIDPDA 85
Query: 148 HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIR 207
+ V ++ KI YD LVIA G + FG G +EN+T + HA E +
Sbjct: 86 NTVTTQSGK-----------KIEYDYLVIATGPKL-VFGAEGQEENSTSICTAEHALETQ 133
Query: 208 RKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKD 266
+KL L PG VV+G P GV G +F +M + ++
Sbjct: 134 KKL---QELYANPG-----------PVVIGAIP-GVSXFGPAYEFALMLHYELKKRGIRY 178
Query: 267 YIHVTLIEANEILSSFD----DRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLI---LND 318
+ +T I + L F + ++ + + + VK ++ K+I LN
Sbjct: 179 KVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNG 238
Query: 319 GT-EVPYGLLVWSTGV-GPSTLVKSLDLPKSPGGRIGI-DEWLRVPSVQDVFAVGDCSGY 375
T EVP ++ GP + + D +P ++ I + + P+ +++F VG +
Sbjct: 239 NTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTA- 297
Query: 376 LESTGKTVLP 385
+ KT +P
Sbjct: 298 IPPIEKTPIP 307
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 127/310 (40%), Gaps = 44/310 (14%)
Query: 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDN 147
+ +S R + FTP +G +F ++ P+A + P + E F ID D
Sbjct: 30 ITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIE----FINEKAESIDPDA 85
Query: 148 HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIR 207
+ V ++ KI YD LVIA G + FG G +EN+T + HA E +
Sbjct: 86 NTVTTQSGK-----------KIEYDYLVIATGPKL-VFGAEGQEENSTSICTAEHALETQ 133
Query: 208 RKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKD 266
+KL L PG VV+G P GV G +F +M + ++
Sbjct: 134 KKL---QELYANPG-----------PVVIGAIP-GVSXFGPAYEFALMLHYELKKRGIRY 178
Query: 267 YIHVTLIEANEILSSFD----DRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLI---LND 318
+ +T I + L F + ++ + + + VK ++ K+I LN
Sbjct: 179 KVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNG 238
Query: 319 GT-EVPYGLLVWSTGV-GPSTLVKSLDLPKSPGGRIGI-DEWLRVPSVQDVFAVGDCSGY 375
T EVP ++ GP + + D +P ++ I + + P+ +++F VG +
Sbjct: 239 NTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTA- 297
Query: 376 LESTGKTVLP 385
+ KT +P
Sbjct: 298 IPPIEKTPIP 307
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 48/241 (19%)
Query: 143 IDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREV 200
ID H V E + T E RTL+ YDKLV+ALG++A+ + G+ T + +
Sbjct: 92 IDRAAHTVEIENLRTGERRTLK-------YDKLVLALGSKANRPPVEGMDLAGVTPVTNL 144
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260
A+ ++ IS E S+ V+VGGG G+E + L+D
Sbjct: 145 DEAEFVQH------------AISAGEVSK---AVIVGGGFIGLEMAVSLADMW------- 182
Query: 261 YSHVKDYIHVTLIE-ANEILSSFDDR-----LRH--YATTQLSKSGVRLVRGIVKDVDSQ 312
I T++E A++I+ F + LRH + +G ++VR + +
Sbjct: 183 ------GIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVR-LEGENGKV 235
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
++ D + L++ + GV P+T L + L P G I +D +R S D+FA GD
Sbjct: 236 ARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRT-SDPDIFAGGD 294
Query: 372 C 372
C
Sbjct: 295 C 295
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 23/159 (14%)
Query: 224 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 283
E+ R+L VGGG VEF+G + Y Y+ + + IL FD
Sbjct: 205 EDAPKRML---CVGGGYIAVEFAG---------IFNGYKPCGGYVDLCY-RGDLILRGFD 251
Query: 284 DRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 337
+R T QL +G+R+ I K+ D S + NDGTE Y ++ + G P +
Sbjct: 252 TEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRS 311
Query: 338 LVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
LD + G + +D + + SV +++A+GD +
Sbjct: 312 QALQLDKAGVRTGKNGAVQVDAYSKT-SVDNIYAIGDVT 349
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 23/159 (14%)
Query: 224 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 283
E+ R+L VGGG VEF+G + Y Y+ + + IL FD
Sbjct: 205 EDAPKRML---CVGGGYIAVEFAG---------IFNGYKPCGGYVDLCY-RGDLILRGFD 251
Query: 284 DRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 337
+R T QL +G+R+ I K+ D S + NDGTE Y ++ + G P +
Sbjct: 252 TEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRS 311
Query: 338 LVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
LD + G + +D + + SV +++A+GD +
Sbjct: 312 QALQLDKAGVRTGKNGAVQVDAYSKT-SVDNIYAIGDVT 349
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 136/333 (40%), Gaps = 63/333 (18%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
N VV++G+G AG + G+ S ++ + V L L ++ AE
Sbjct: 1 NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAES 60
Query: 120 I-ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178
+ R A + + + I+ D + + + R L+ YD+LV+A
Sbjct: 61 LYLRTPDAYAAQNIQLLGGTQVTAINRDRQ----QVILSDGRALD-------YDRLVLAT 109
Query: 179 GAEASTF----GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCV 234
G G G N +LR + A+ IRR+L+ + L V
Sbjct: 110 GGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRL-----------------V 152
Query: 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEIL--------SSFDDR 285
V+GGG G+E + + +K +HVTL++ A +L S+F +
Sbjct: 153 VIGGGYIGLEVAA--------------TAIKANMHVTLLDTAARVLERVTAPPVSAFYEH 198
Query: 286 LRHYATTQLSKSGVRLVRGIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPSTLVKSL 342
L A + ++G + V G D QK ++ DGT +P L++ G+ P+ + S
Sbjct: 199 LHREAGVDI-RTGTQ-VCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASA 256
Query: 343 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375
+ G I I+E ++ S + AVGDC+ +
Sbjct: 257 AGLQVDNG-IVINEHMQT-SDPLIMAVGDCARF 287
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 138/333 (41%), Gaps = 63/333 (18%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
N VV++G+G AG + G+ S ++ + V L L ++ AE
Sbjct: 2 NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAES 61
Query: 120 I-ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178
+ R A + + + I+ D + + + R L+ YD+LV+A
Sbjct: 62 LYLRTPDAYAAQNIQLLGGTQVTAINRDRQ----QVILSDGRALD-------YDRLVLAT 110
Query: 179 GAEASTF----GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCV 234
G G G N +LR + A+ IRR+L+ + +RL V
Sbjct: 111 GGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIAD--------------NRL---V 153
Query: 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEIL--------SSFDDR 285
V+GGG G+E + + +K +HVTL++ A +L S+F +
Sbjct: 154 VIGGGYIGLEVAA--------------TAIKANMHVTLLDTAARVLERVTAPPVSAFYEH 199
Query: 286 LRHYATTQLSKSGVRLVRGIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPSTLVKSL 342
L A + ++G + V G D QK ++ DGT +P L++ G+ P+ + S
Sbjct: 200 LHREAGVDI-RTGTQ-VCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASA 257
Query: 343 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375
+ G I I+E ++ S + AVGDC+ +
Sbjct: 258 AGLQVDNG-IVINEHMQT-SDPLIMAVGDCARF 288
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 240
Query: 293 QLSKSGVRLV-----RGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346
QL+ +G++++ + + D S+ + G ++ + L++ + G P T K L L
Sbjct: 241 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 298
Query: 347 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 390
+ G + +DE+ R +V +++A+GD + + T + A A V
Sbjct: 299 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 345
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 191 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 239
Query: 293 QLSKSGVRLV-----RGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346
QL+ +G++++ + + D S+ + G ++ + L++ + G P T K L L
Sbjct: 240 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 297
Query: 347 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 390
+ G + +DE+ R +V +++A+GD + + T + A A V
Sbjct: 298 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 344
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 193 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 241
Query: 293 QLSKSGVRLV-----RGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346
QL+ +G++++ + + D S+ + G ++ + L++ + G P T K L L
Sbjct: 242 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 299
Query: 347 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 390
+ G + +DE+ R +V +++A+GD + + T + A A V
Sbjct: 300 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 346
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
+ VGGG VEF+G + + +D + VTL E IL FD LR T
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQ-----------VTLCYRGEMILRGFDHTLREELTK 240
Query: 293 QLSKSGVRLV-----RGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346
QL+ +G++++ + + D S+ + G ++ + L++ + G P T K L L
Sbjct: 241 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRT--KDLQLQN 298
Query: 347 S----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 390
+ G + +DE+ R +V +++A+GD + + T + A A V
Sbjct: 299 AGVMIKNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVAINEAAALV 345
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 38/185 (20%)
Query: 212 LNLMLSDVPGI----SEEEKSRLL--------HCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
L+ + +D+ G+ ++E+ RL+ + VV+GGG G+E + L+ F
Sbjct: 122 LSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKF------- 174
Query: 260 RYSHVKDYIHVTLIEA-NEILSSF-DDRLRHYATTQLSKSGVRLVRGIVKDV---DSQKL 314
++VTL+EA +L+ + L + + GV L G D D K+
Sbjct: 175 -------GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKV 227
Query: 315 I---LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR-IGIDEWLRVPSVQDVFAVG 370
+ DG+ +P +++ G+ P V +L + GG + +DE+ R S+ DV+A+G
Sbjct: 228 TGVRMQDGSVIPADIVIVGIGIVPC--VGALISAGASGGNGVDVDEFCRT-SLTDVYAIG 284
Query: 371 DCSGY 375
DC+ +
Sbjct: 285 DCAAH 289
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 308 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
D + + L DG+ + YG L+W+TG P L
Sbjct: 92 DPAAHTVKLGDGSAIEYGKLIWATGGDPRRL 122
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 104/243 (42%), Gaps = 53/243 (21%)
Query: 143 IDTDNHVVHCE-TVTDELRTLEPWKFKISYDKLVIALGA-----EASTFGIHGVKENATF 196
+DT+ +V+ E T T ++ F+ SYD+L+IA G E + GV
Sbjct: 119 VDTEKKIVYAEHTKTKDV-------FEFSYDRLLIATGVRPVMPEWEGRDLQGVH----L 167
Query: 197 LREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256
L+ + A+ I + L E +++ ++GGG G+E + + +
Sbjct: 168 LKTIPDAERILKTL---------------ETNKVEDVTIIGGGAIGLEMAETFVELGKK- 211
Query: 257 VRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRG----IVKDVDS 311
V +IE N+ I + +D + Y + K + ++ K +
Sbjct: 212 -------------VRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNER 258
Query: 312 QKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370
+ + D L++ S GV P+T ++ ++ + G I ++ +++ +VQDV+A G
Sbjct: 259 VEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQT-NVQDVYAAG 317
Query: 371 DCS 373
DC+
Sbjct: 318 DCA 320
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 137/337 (40%), Gaps = 69/337 (20%)
Query: 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIAR 122
+VV++G+G G L K + + Y+V + ++ P+L+ G + P R
Sbjct: 10 KVVIVGNGPGGFELAKQLSQT-YEVTVIDKEPVPYYSKPMLSHYIAGFI-------PRNR 61
Query: 123 IQPAI---SREPGSYFFLSHCAG-IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178
+ P R+ G L+ A ID VV E K ++ YD LV+A
Sbjct: 62 LFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITE------------KGEVPYDTLVLAT 109
Query: 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238
GA A I G KE LR + A I+ + E S +++GG
Sbjct: 110 GARAREPQIKG-KEYLLTLRTIFDADRIKESI---------------ENSG--EAIIIGG 151
Query: 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSG 298
G G+E +G L++ Y HV LI + D+ L + L ++G
Sbjct: 152 GFIGLELAGNLAE-------------AGY-HVKLIHRGAMFLGLDEELSNMIKDMLEETG 197
Query: 299 VRLVRGIVKDVDSQKLILND-GTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG---GR-IG 353
V+ ++S+ L N+ G G + + +V ++DL + G GR I
Sbjct: 198 VKFF------LNSELLEANEEGVLTNSGFIEGKVKICAIGIVPNVDLARRSGIHTGRGIL 251
Query: 354 IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 390
ID+ R S +DV+A+GDC+ Y T A+ Q
Sbjct: 252 IDDNFRT-SAKDVYAIGDCAEYSGIIAGTAKAAMEQA 287
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 38/212 (17%)
Query: 170 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 229
+YDKL++ G++ + I G+ + +L + ++ +KL EE +
Sbjct: 105 AYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDA---KKLF-------------EEAPK 148
Query: 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLR 287
++G G G E + S+ Q Y +V LI+ +E + FD
Sbjct: 149 AKTITIIGSGYIGAELAEAYSN-------QNY-------NVNLIDGHERVLYKYFDKEFT 194
Query: 288 HYATTQLSKSGVRLVRG----IVKDVDSQKLILN-DGTEVPYGLLVWSTGVGPSTLVKSL 342
GV LV G ++VD + + DG E+ + + G P+T +
Sbjct: 195 DILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKG 254
Query: 343 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
+ G I DE++ S +D+FA GD +
Sbjct: 255 KVAMLDNGAIITDEYMH-SSNRDIFAAGDSAA 285
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 43/243 (17%)
Query: 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATF 196
LS I+ + + + VT + +YD L+++ GA+ I G++E
Sbjct: 113 LSEVVKINKEEKTITIKNVTTN------ETYNEAYDVLILSPGAKPIVPSIPGIEEAKAL 166
Query: 197 --LREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254
LR V I+ + +E+K R H V+GGG GVE +
Sbjct: 167 FTLRNVPDTDRIKAYI-------------DEKKPR--HATVIGGGFIGVEX--------V 203
Query: 255 RDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRLV--RGIVKDVDS 311
++R+R I VTL+E AN++ D Y V LV G+ ++
Sbjct: 204 ENLRER------GIEVTLVEXANQVXPPIDYEXAAYVHEHXKNHDVELVFEDGVDALEEN 257
Query: 312 QKLI-LNDGTEVPYGLLVWSTGVGP-STLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369
++ L G+ + L+ + GV P S+L K L G I ++E + S ++A+
Sbjct: 258 GAVVRLKSGSVIQTDXLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQT-SDPHIYAI 316
Query: 370 GDC 372
GD
Sbjct: 317 GDA 319
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 105/238 (44%), Gaps = 43/238 (18%)
Query: 143 IDTDNHVVHCE-TVTDELRTLEPWKFKISYDKLVIALGA-----EASTFGIHGVKENATF 196
+DT+ +V+ E T T ++ F+ SYD+L+IA G E + GV
Sbjct: 119 VDTEKKIVYAEHTKTKDV-------FEFSYDRLLIATGVRPVXPEWEGRDLQGVH----L 167
Query: 197 LREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256
L+ + A+ I + L E +++ ++GGG G+E + F+
Sbjct: 168 LKTIPDAERILKTL---------------ETNKVEDVTIIGGGAIGLEXA---ETFVELG 209
Query: 257 VRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL 316
+ R D+I T+ + + + + +H+ L+ V+ +G + + +
Sbjct: 210 KKVRXIERNDHIG-TIYDGDXAEYIYKEADKHHIEI-LTNENVKAFKG----NERVEAVE 263
Query: 317 NDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
D L++ S GV P+T ++ ++ + G I ++ + + +VQDV+A GDC+
Sbjct: 264 TDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQT-NVQDVYAAGDCA 320
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 25/152 (16%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYA 290
H VVVGGG G+E ++ K V+++EA E IL ++D L
Sbjct: 173 HLVVVGGGYIGLELG--------------IAYRKLGAQVSVVEARERILPTYDSELTAPV 218
Query: 291 TTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGL----LVWSTGVGPSTL---VKSL 342
L K G+ L G V+ ++ L+ NDG L ++ + G P T ++ L
Sbjct: 219 AESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECL 278
Query: 343 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
DL K G I IDE + S+ +V+A+GD +G
Sbjct: 279 DL-KMNGAAIAIDERCQT-SMHNVWAIGDVAG 308
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 49/215 (22%)
Query: 170 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 229
SYDKL++A GA + I G +++ + L+ L+ VP + +
Sbjct: 103 SYDKLILATGASQFSTQIRG-----------SQTEKLLKYKFLSGALAAVPLLENSQT-- 149
Query: 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY 289
V+G GP G E DF+++ K +HV N + FD
Sbjct: 150 ---VAVIGAGPIGX----EAIDFLVK--------XKKTVHVFESLENLLPKYFDKEXVAE 194
Query: 290 ATTQLSKSGV------------RLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337
L K V GIV + Q++ + G +++ + P
Sbjct: 195 VQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDSG--------IFALNLHPQL 246
Query: 338 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
+ ++ I +D +L+ SV +VFA+GDC
Sbjct: 247 AYLDKKIQRNLDQTIAVDAYLQT-SVPNVFAIGDC 280
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 43/214 (20%)
Query: 170 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 229 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 279
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 280 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
L P G I DE++R S DVFAVGD +
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDAT 283
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 43/214 (20%)
Query: 170 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 229 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 279
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 280 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
L P G I DE++R S DVFAVGD +
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDAT 283
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 43/214 (20%)
Query: 170 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 229 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 279
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 280 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
L P G I DE++R S DVFAVGD +
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDAT 283
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 43/214 (20%)
Query: 170 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 229 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 279
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 280 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
L P G I DE++R S DVFAVGD +
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDAT 283
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 43/214 (20%)
Query: 170 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 229 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 279
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 280 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
L P G I DE++R S DVFAVGD +
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDAT 283
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 43/214 (20%)
Query: 170 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 229 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 279
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 280 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
L P G I DE++R S DVFAVGD +
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDAT 283
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 34/233 (14%)
Query: 148 HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIR 207
++++C + T+E L++A+GA T + GV F HA +
Sbjct: 152 YILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVF----DHATLVE 207
Query: 208 RKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267
L PG + VVVGG T VE+ + R V +
Sbjct: 208 E-------LDYEPGST---------VVVVGGSKTAVEYGCFFNATGRRTVMLVRTE---- 247
Query: 268 IHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR----GIVKDVDSQKLILNDGTEVP 323
+ LI+ NE + DR++ +S S V + G V+ V + + N +
Sbjct: 248 -PLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVA--MTPNGEMRIE 304
Query: 324 YGLLVWSTGVGP--STLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
+ G P + L K L L P G + ++E+L+ SV +V+AVGD G
Sbjct: 305 TDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDLIG 356
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 35/154 (22%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
VV+GGG G+E ++F + VT++E A EILS F+ ++
Sbjct: 174 VVIGGGYIGIELGTAYANFGTK--------------VTILEGAGEILSGFEKQMAAIIKK 219
Query: 293 QLSKSGVRLV-RGIVKDVDSQKLILNDGTEVPY-----------GLLVWSTGVGPST--- 337
+L K GV +V + K + ++ DG V Y ++ + G P+T
Sbjct: 220 RLKKKGVEVVTNALAKGAEERE----DGVTVTYEANGETKTIDADYVLVTVGRRPNTDEL 275
Query: 338 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
++ + + + G I +D+ R SV ++FA+GD
Sbjct: 276 GLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGD 308
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 31/158 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 192 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 238
Query: 294 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 339
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 239 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 298
Query: 340 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
SL+ + G I +DE+ +V+ ++AVGD G
Sbjct: 299 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG 335
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 31/158 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 190 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 236
Query: 294 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 339
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 237 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 296
Query: 340 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
SL+ + G I +DE+ +V+ ++AVGD G
Sbjct: 297 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG 333
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 31/158 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 294 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 339
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 340 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
SL+ + G I +DE+ +V+ ++AVGD G
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG 334
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 31/158 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 294 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 339
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 340 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
SL+ + G I +DE+ +V+ ++AVGD G
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG 334
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 31/158 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 294 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 339
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 340 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
SL+ + G I +DE+ +V+ ++AVGD G
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG 334
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 31/158 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 176 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 222
Query: 294 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 339
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 223 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 282
Query: 340 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
SL+ + G I +DE+ +V+ ++AVGD G
Sbjct: 283 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG 319
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 31/158 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 174 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 220
Query: 294 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 339
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 221 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 280
Query: 340 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
SL+ + G I +DE+ +V+ ++AVGD G
Sbjct: 281 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG 317
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 31/158 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNXTEE 237
Query: 294 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 339
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKD 297
Query: 340 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
SL+ + G I +DE+ +V+ ++AVGD G
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG 334
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 123/325 (37%), Gaps = 33/325 (10%)
Query: 64 RVVVLGSGWAG---CRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
+V+VLG + +K + S DV ++ F P L +G + + +
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDL 62
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
+ P E G F ID + +V+ + E YD +++ +GA
Sbjct: 63 SEALP----EKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEE-------YDYVIVGIGA 111
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLL----NLMLSDVPGIS-EEEKSRLLHCVV 235
+T + G + + E A ++R KL N+ + P K ++ V
Sbjct: 112 HLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFV 171
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVK---DYIHVTLIEANEILSSFDDRLRHYATT 292
+ + E F M + Y K D +HVT+ E LS R +
Sbjct: 172 -----PNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVAS 226
Query: 293 QLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYG---LLVWSTGVGPSTLVKSLDLPKSP 348
++ G++LV +K++ +++ G +P LL TG P+ + DL
Sbjct: 227 IYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTG-NPALKNSTPDLVDD- 284
Query: 349 GGRIGIDEWLRVPSVQDVFAVGDCS 373
GG I D + +V+AVGD +
Sbjct: 285 GGFIPTDLNMVSIKYDNVYAVGDAN 309
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VGGG GVEF+ + F V+ H D IL +FD LR
Sbjct: 195 VIVGGGYIGVEFA---NIFHGLGVKTTLLHRGDL----------ILRNFDYDLRQLLNDA 241
Query: 294 LSKSGVRLV-RGIVKDVDSQK----LILNDGTEVPYGLLVWSTGVGPSTLVKSLD---LP 345
+ G+ ++ V V S + ++L +G + ++ +TG P+T L+ +
Sbjct: 242 MVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVK 301
Query: 346 KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+ G + +DE + +V ++AVGD +G+++ T
Sbjct: 302 VNEFGAVVVDEKM-TTNVSHIWAVGDVTGHIQLT 334
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 31/158 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 294 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 339
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 340 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
SL+ + G I +DE+ +V+ ++AVGD G
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG 334
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 31/158 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 174 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 220
Query: 294 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 339
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 221 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 280
Query: 340 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
SL+ + G I +DE+ +V+ ++AVGD G
Sbjct: 281 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG 317
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 335 PSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
P+ KS + G I +DEW+R SV VFA GDC+
Sbjct: 252 PTDFAKSNGIETDTNGYIKVDEWMRT-SVPGVFAAGDCT 289
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 335 PSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
P+ KS + G I +DEW+R SV VFA GDC+
Sbjct: 252 PTDFAKSNGIETDTNGYIKVDEWMRT-SVPGVFAAGDCT 289
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 35/231 (15%)
Query: 170 SYDKLVIALGAEASTFGIHG--VKENA-TFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 226
+YDKL+ A G++ I G +KE + F + + Q + KL N +DV I++ E
Sbjct: 137 TYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFV--KLYQNS--ADV--IAKLE 190
Query: 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDR 285
+ VVG G GVE L++ R ++ V LI+ + L+ + DR
Sbjct: 191 NKDIKRVAVVGAGYIGVE----LAEAFQRKGKE----------VVLIDVVDTCLAGYYDR 236
Query: 286 -LRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPSTLVK 340
L + + G++L G VK+V + I+ D E +++ + G P+T +
Sbjct: 237 DLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPNTTLG 296
Query: 341 S--LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG-YLESTGKTVLPALA 388
+ +DL ++ + + +P V +A+GDC+ Y +T T ALA
Sbjct: 297 NGKIDLFRNGAFLVNKRQETSIPGV---YAIGDCATIYDNATRDTNYIALA 344
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 35/231 (15%)
Query: 170 SYDKLVIALGAEASTFGIHG--VKENA-TFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 226
+YDKL+ A G++ I G +KE + F + + Q + KL N +DV I++ E
Sbjct: 137 TYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFV--KLYQNS--ADV--IAKLE 190
Query: 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDR 285
+ VVG G GVE L++ R ++ V LI+ + L+ + DR
Sbjct: 191 NKDIKRVAVVGAGYIGVE----LAEAFQRKGKE----------VVLIDVVDTCLAGYYDR 236
Query: 286 -LRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPSTLVK 340
L + + G++L G VK+V + I+ D E +++ + G P+T +
Sbjct: 237 DLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPNTTLG 296
Query: 341 S--LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG-YLESTGKTVLPALA 388
+ +DL ++ + + +P V +A+GDC+ Y +T T ALA
Sbjct: 297 NGKIDLFRNGAFLVNKRQETSIPGV---YAIGDCATIYDNATRDTNYIALA 344
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 28/207 (13%)
Query: 169 ISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEK 227
I Y LV+A GA + + +LR + ++ +R+++ ++K
Sbjct: 97 IEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRM-------------PDKK 143
Query: 228 SRLLHCVVVGGGPTGVEFSGEL-SDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL 286
H VV+G G G+EF+ + + DV + V + + EI S F D
Sbjct: 144 ----HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV-----MARVVTPEISSYFHD-- 192
Query: 287 RHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346
RH GVR + ++L+DG +P L+V GV P+ + +
Sbjct: 193 RHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLP 252
Query: 347 SPGGRIGIDEWLRVPSVQDVFAVGDCS 373
+ G I +D+ L + S + A+GDC+
Sbjct: 253 TAAGII-VDQQL-LTSDPHISAIGDCA 277
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 57/240 (23%)
Query: 160 RTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSD 218
R L+ +++ SYD L+++ GA I GV T LR + I + + +N
Sbjct: 95 RLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMN----- 149
Query: 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANE 277
+ H VVGGG G+E L I TL+E A++
Sbjct: 150 ----------NVEHATVVGGGFIGLEMMESLHHL--------------GIKTTLLELADQ 185
Query: 278 ILSSFDDRLRHYATTQLSKSGVRLVRGIV------------------KDVDSQ------K 313
+++ D + +A + GV L G +D Q
Sbjct: 186 VMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS 245
Query: 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
L L++G + LL+ + GV P T L + L G I ++ ++ S ++AVGD
Sbjct: 246 LTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-SDPAIYAVGDA 304
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 224
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 281
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 282 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 340
D R Y + + ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPYRLNEE-----------INAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 224
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 281
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 282 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 340
D R Y + + ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPYRLNEE-----------INAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 224
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 281
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 282 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 340
D R Y + + ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPYRLNEE-----------INAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 224
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 281
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 282 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 340
D R Y + + ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPYRLNEE-----------INAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 224
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 281
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 282 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 340
D R Y + + ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPYRLNEE-----------INAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 224
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 101 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 146
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 281
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 147 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 198
Query: 282 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 340
D R Y + + ++ ++ G Y +++ G P S ++
Sbjct: 199 LDKREIPYRLNEE-----------INAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 247
Query: 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
S ++ G I +++ +V +++A+GD +
Sbjct: 248 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 279
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 224
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 281
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 282 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 340
D R Y + + ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPYRLNEE-----------INAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 275 ANEILSSFDDRLRHYATTQLSKSGVRLVRGI----VKDVDSQKLI--LNDGTEVP-YGLL 327
N IL FD+ + + + K+ + +V +K V + L L+DG + +
Sbjct: 208 GNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHV 267
Query: 328 VWSTGVGPSTLVKSLDLPK----SPGGRIGIDEWLRVPSVQDVFAVGDC 372
++ G P T ++L L K + I +DE R SV +++AVGDC
Sbjct: 268 IYCVGRSPDT--ENLKLEKLNVETNNNYIVVDENQRT-SVNNIYAVGDC 313
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 23/151 (15%)
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
++G G G+E +G L F + V +E + +L FD L
Sbjct: 169 VAIIGAGYIGIELAGLLRSF------------GSEVTVVALE-DRLLFQFDPLLSATLAE 215
Query: 293 QLSKSGVR-----LVRGIVKDVDSQKLILNDGTEVP-YGLLVWSTGVGPSTL---VKSLD 343
+ G+ V + +D L+ DGT + + ++W+ G P+T +++
Sbjct: 216 NMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAG 275
Query: 344 LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
+ G + D + +V V+A+GD +G
Sbjct: 276 IEVQSNGMVPTDAYQNT-NVPGVYALGDITG 305
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 20/131 (15%)
Query: 280 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339
+++ DR+ L K+ V +++G + VD++ L +N G + ++ +TG PS
Sbjct: 89 TAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN-GETITADHILIATGGRPSH-- 145
Query: 340 KSLDLPKSPGGRIGIDE--WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHL 397
P PG GID + +P++ + AV +GY+ V+ L + HL
Sbjct: 146 -----PDIPGVEYGIDSDGFFALPALPERVAV-VGAGYIGVELGGVINGLGA----KTHL 195
Query: 398 FQK-----PSF 403
F+ PSF
Sbjct: 196 FEMFDAPLPSF 206
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 280 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339
+++ DR+ L K+ V +++G + VD++ L +N G + ++ +TG PS
Sbjct: 89 TAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN-GETITADHILIATGGRPSH-- 145
Query: 340 KSLDLPKSPGGRIGIDE--WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHL 397
P PG GID + +P++ + AV +GY+ V+ L + HL
Sbjct: 146 -----PDIPGVEYGIDSDGFFALPALPERVAVVG-AGYIAVELAGVINGLGA----KTHL 195
Query: 398 F 398
F
Sbjct: 196 F 196
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 318 DGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGID----EWLRVPSVQDVFAVGDC 372
DGTE + ++W TG P+ + +K LDL +P G++ +D L VPSV + GD
Sbjct: 268 DGTERAFDAVIWCTGFRPALSHLKGLDL-VTPQGQVEVDGSGLRALAVPSVW-LLGYGDW 325
Query: 373 SGYLEST 379
+G +T
Sbjct: 326 NGMASAT 332
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 308 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
D + + L+DG +PYG LV +TG P L
Sbjct: 86 DPQAHTVALSDGRTLPYGTLVLATGAAPRAL 116
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 308 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
D + + L+DG +PYG LV +TG P L
Sbjct: 86 DPQAHTVALSDGRTLPYGTLVLATGAAPRAL 116
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 251 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310
D DV + + +++D IH+T + + IL+ R + K+G +RG + V
Sbjct: 6 DISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFXIRGALNAVR 65
Query: 311 SQKLILNDGTEVPYGLLVWSTG 332
S L+ + P ++ S+G
Sbjct: 66 S--LVPDALERKPKAVVTHSSG 85
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 251 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310
D DV + + +++D IH+T + + IL+ R + K+G +RG + V
Sbjct: 6 DISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVR 65
Query: 311 SQKLILNDGTEVPYGLLVWSTG 332
S L+ + P ++ S+G
Sbjct: 66 S--LVPDALERKPKAVVTHSSG 85
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 38/154 (24%)
Query: 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE------ANEILSSFDDRLR- 287
V+GGG +GVE + +L+ + HVTL+E A+++L D++R
Sbjct: 360 VIGGGNSGVEAAIDLAGIVE--------------HVTLLEFAPEMKADQVLQ---DKVRS 402
Query: 288 --------HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339
+ TT++ G ++V ++ + + D V + G+ P+T
Sbjct: 403 LKNVDIILNAQTTEVKGDGSKVV-----GLEYRDRVSGDIHSVALAGIFVQIGLLPNTHW 457
Query: 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
L ++ G I ID SV+ VFA GDC+
Sbjct: 458 LEGALERNRMGEIIIDAKCET-SVKGVFAAGDCT 490
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 36/76 (47%)
Query: 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 248
G+ + ++E + +EI K+ L+ ++E+E +C+ + P+G G
Sbjct: 13 GLVPRGSHMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGH 72
Query: 249 LSDFIMRDVRQRYSHV 264
+ ++ + DV RY +
Sbjct: 73 VRNYTIGDVIARYQRM 88
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 132/328 (40%), Gaps = 64/328 (19%)
Query: 60 NEKPRVVVLGSGWAG---CRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSV 116
+E+ +V++G+G AG R + +D ++ + P+L++
Sbjct: 2 SERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTG----FSKNKD 57
Query: 117 AEPIARIQPAISREPGSYFFLSH--CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKL 174
A+ +A +P E + L+H GID + + + +E ++ Y L
Sbjct: 58 ADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIW---IGEE---------EVRYRDL 105
Query: 175 VIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHC 233
V+A GAE + G ++A + + ++ R+ + K R+L
Sbjct: 106 VLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQ--------------AAAGKRRVL-- 149
Query: 234 VVVGGGPTGVEFSGELSD--FIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
++G G G EF+ +LS + + V + +H +A +
Sbjct: 150 -LLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQ-------------- 194
Query: 292 TQLSKSGVRLVRGIV-----KDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLP 345
L GVR G V K + + L+DG +P L+V + G+ P T L + L
Sbjct: 195 AGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLA 254
Query: 346 KSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
+ G I +D LR S +++A+GDC+
Sbjct: 255 VNRG--IVVDRSLRT-SHANIYALGDCA 279
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 28/159 (17%)
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
VVVG G G+E +G +H+ +I +L FD+ +++ T
Sbjct: 188 VVVVGAGYIGIELAGVFHGL------GSETHL-------VIRGETVLRKFDECIQNTITD 234
Query: 293 QLSKSGVRL--VRGIVK-----DVDSQKLILNDGTEV-PYGLLVWSTG----VGPSTLVK 340
K G+ + + IVK + D K+ +ND + L+W+ G +G + +
Sbjct: 235 HYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGS--E 292
Query: 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
++ + + +I DE+ +V +++++GD G +E T
Sbjct: 293 NVGIKLNSHDQIIADEYQNT-NVPNIYSLGDVVGKVELT 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,573,964
Number of Sequences: 62578
Number of extensions: 518854
Number of successful extensions: 1381
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1328
Number of HSP's gapped (non-prelim): 99
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)