Query 013810
Match_columns 436
No_of_seqs 352 out of 2275
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:36:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1252 Ndh NADH dehydrogenase 100.0 7.8E-53 1.7E-57 397.2 32.4 326 61-408 2-333 (405)
2 PTZ00318 NADH dehydrogenase-li 100.0 3.5E-48 7.6E-53 381.2 36.3 331 60-406 8-347 (424)
3 KOG2495 NADH-dehydrogenase (ub 100.0 5.1E-49 1.1E-53 360.2 27.2 335 58-403 51-393 (491)
4 PRK13512 coenzyme A disulfide 100.0 2.5E-43 5.5E-48 348.2 30.5 323 63-425 2-341 (438)
5 TIGR03169 Nterm_to_SelD pyridi 100.0 1.6E-42 3.5E-47 335.9 33.1 306 64-406 1-310 (364)
6 PRK09754 phenylpropionate diox 100.0 9.5E-42 2.1E-46 333.3 31.4 301 62-412 3-321 (396)
7 PRK09564 coenzyme A disulfide 100.0 1.3E-40 2.9E-45 330.9 30.9 321 63-424 1-344 (444)
8 PRK14989 nitrite reductase sub 100.0 2E-40 4.4E-45 346.2 30.9 292 62-406 3-311 (847)
9 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.3E-40 5E-45 320.7 25.8 307 61-425 3-363 (454)
10 PRK04965 NADH:flavorubredoxin 100.0 4.8E-39 1E-43 312.6 30.6 290 63-407 3-304 (377)
11 TIGR01421 gluta_reduc_1 glutat 100.0 3.2E-39 6.8E-44 319.6 23.7 301 62-425 2-357 (450)
12 TIGR02374 nitri_red_nirB nitri 100.0 2.2E-38 4.7E-43 331.6 30.2 288 65-406 1-302 (785)
13 PRK08010 pyridine nucleotide-d 100.0 9.9E-39 2.1E-43 316.6 25.8 307 62-425 3-346 (441)
14 PLN02507 glutathione reductase 100.0 8.7E-39 1.9E-43 319.3 25.5 287 61-404 24-362 (499)
15 TIGR01424 gluta_reduc_2 glutat 100.0 1.2E-38 2.6E-43 315.9 24.5 282 62-404 2-325 (446)
16 PRK06370 mercuric reductase; V 100.0 1.9E-38 4.1E-43 316.3 25.9 303 60-424 3-361 (463)
17 PRK05249 soluble pyridine nucl 100.0 1.4E-38 3.1E-43 317.5 25.1 290 60-405 3-335 (461)
18 PRK14694 putative mercuric red 100.0 2.5E-38 5.5E-43 315.4 26.6 311 58-425 2-362 (468)
19 PRK06116 glutathione reductase 100.0 1.9E-38 4.1E-43 315.4 25.1 280 62-404 4-327 (450)
20 PLN02546 glutathione reductase 100.0 5.1E-38 1.1E-42 315.0 27.6 303 61-425 78-441 (558)
21 PRK06467 dihydrolipoamide dehy 100.0 1.3E-38 2.8E-43 317.0 22.6 307 61-424 3-363 (471)
22 PRK07251 pyridine nucleotide-d 100.0 4.2E-38 9.1E-43 311.8 25.9 306 62-424 3-344 (438)
23 PRK06416 dihydrolipoamide dehy 100.0 2.9E-38 6.2E-43 315.3 24.3 306 61-424 3-360 (462)
24 PRK13748 putative mercuric red 100.0 2.5E-37 5.4E-42 315.9 27.7 308 61-424 97-454 (561)
25 PRK07845 flavoprotein disulfid 100.0 2E-37 4.3E-42 308.4 25.9 307 63-424 2-364 (466)
26 TIGR02053 MerA mercuric reduct 100.0 1E-37 2.3E-42 311.2 23.5 302 63-424 1-356 (463)
27 PTZ00058 glutathione reductase 100.0 2E-37 4.3E-42 310.5 25.0 313 61-425 47-460 (561)
28 TIGR01423 trypano_reduc trypan 100.0 3.1E-37 6.7E-42 306.2 25.5 315 61-425 2-379 (486)
29 TIGR01438 TGR thioredoxin and 100.0 2.9E-37 6.2E-42 307.3 24.1 309 62-425 2-372 (484)
30 PRK07846 mycothione reductase; 100.0 6.3E-37 1.4E-41 303.0 25.8 300 63-425 2-354 (451)
31 PTZ00052 thioredoxin reductase 100.0 1.1E-36 2.3E-41 304.6 26.4 307 62-425 5-369 (499)
32 PRK14727 putative mercuric red 100.0 2.6E-36 5.5E-41 301.4 28.9 309 61-424 15-372 (479)
33 TIGR01316 gltA glutamate synth 100.0 3.6E-37 7.8E-42 304.6 21.5 340 1-405 71-448 (449)
34 TIGR01292 TRX_reduct thioredox 100.0 1.4E-36 3.1E-41 286.8 24.3 281 63-405 1-299 (300)
35 PRK06115 dihydrolipoamide dehy 100.0 3.6E-36 7.8E-41 299.3 26.9 306 62-424 3-364 (466)
36 PRK07818 dihydrolipoamide dehy 100.0 1.6E-36 3.4E-41 302.6 24.3 303 62-425 4-365 (466)
37 COG0492 TrxB Thioredoxin reduc 100.0 2.6E-36 5.6E-41 279.2 23.4 283 61-407 2-301 (305)
38 PRK06912 acoL dihydrolipoamide 100.0 2.6E-36 5.5E-41 300.2 24.7 304 64-425 2-357 (458)
39 PRK09853 putative selenate red 100.0 3.7E-36 8.1E-41 311.8 25.8 336 1-407 482-842 (1019)
40 PRK05976 dihydrolipoamide dehy 100.0 3.2E-36 6.8E-41 300.9 24.3 308 61-424 3-370 (472)
41 PRK10262 thioredoxin reductase 100.0 3.5E-36 7.6E-41 286.3 23.5 288 61-408 5-316 (321)
42 TIGR03385 CoA_CoA_reduc CoA-di 100.0 7.4E-36 1.6E-40 295.1 26.5 310 76-425 1-332 (427)
43 PRK12831 putative oxidoreducta 100.0 1.6E-36 3.5E-41 300.3 21.6 344 1-408 83-462 (464)
44 KOG1336 Monodehydroascorbate/f 100.0 1.7E-35 3.6E-40 276.9 26.0 294 62-405 74-383 (478)
45 PRK06327 dihydrolipoamide dehy 100.0 9.8E-36 2.1E-40 297.1 26.2 306 62-424 4-373 (475)
46 PRK06292 dihydrolipoamide dehy 100.0 3.8E-36 8.1E-41 300.1 23.1 303 61-425 2-359 (460)
47 TIGR01350 lipoamide_DH dihydro 100.0 1.5E-35 3.3E-40 295.9 26.9 301 63-421 2-356 (461)
48 TIGR03452 mycothione_red mycot 100.0 4E-35 8.7E-40 290.5 27.8 301 62-425 2-357 (452)
49 PTZ00153 lipoamide dehydrogena 100.0 1.1E-34 2.3E-39 294.4 25.7 210 168-425 272-535 (659)
50 PRK11749 dihydropyrimidine deh 100.0 4.3E-35 9.2E-40 291.4 21.6 337 1-408 83-453 (457)
51 TIGR03140 AhpF alkyl hydropero 100.0 4.4E-35 9.5E-40 294.6 21.4 285 60-406 210-512 (515)
52 TIGR03143 AhpF_homolog putativ 100.0 1.2E-34 2.5E-39 293.6 22.5 283 61-406 3-308 (555)
53 TIGR03315 Se_ygfK putative sel 100.0 2.2E-34 4.7E-39 300.4 25.0 333 1-405 480-838 (1012)
54 PRK12778 putative bifunctional 100.0 9.1E-35 2E-39 304.7 21.0 342 1-407 372-750 (752)
55 PRK12810 gltD glutamate syntha 100.0 1.5E-34 3.2E-39 287.9 21.1 347 1-407 87-465 (471)
56 PRK12779 putative bifunctional 100.0 3E-34 6.5E-39 302.6 23.1 345 1-406 243-626 (944)
57 PRK12814 putative NADPH-depend 100.0 2.7E-34 6E-39 295.3 20.7 334 1-407 137-501 (652)
58 KOG4716 Thioredoxin reductase 100.0 2.9E-34 6.2E-39 255.1 16.3 296 59-408 16-368 (503)
59 KOG0405 Pyridine nucleotide-di 100.0 1.2E-33 2.6E-38 252.1 19.3 288 61-405 19-350 (478)
60 PRK15317 alkyl hydroperoxide r 100.0 1.5E-33 3.3E-38 283.8 22.6 281 61-406 210-511 (517)
61 COG1251 NirB NAD(P)H-nitrite r 100.0 5.6E-33 1.2E-37 271.3 21.8 292 62-407 3-308 (793)
62 PRK12775 putative trifunctiona 100.0 2.6E-33 5.6E-38 298.1 20.8 343 1-407 374-755 (1006)
63 PRK12770 putative glutamate sy 100.0 1.1E-32 2.3E-37 265.3 22.2 298 61-406 17-349 (352)
64 TIGR01318 gltD_gamma_fam gluta 100.0 4.2E-32 9.1E-37 269.3 20.6 344 1-406 83-465 (467)
65 PRK12769 putative oxidoreducta 100.0 7.2E-32 1.6E-36 278.7 21.6 344 1-406 269-651 (654)
66 KOG1335 Dihydrolipoamide dehyd 100.0 1.3E-31 2.7E-36 242.2 18.6 287 61-405 38-377 (506)
67 TIGR01317 GOGAT_sm_gam glutama 100.0 1.8E-31 4E-36 265.7 20.9 349 1-407 87-479 (485)
68 PRK13984 putative oxidoreducta 100.0 5.4E-31 1.2E-35 270.7 23.4 345 1-407 226-602 (604)
69 PRK12809 putative oxidoreducta 100.0 2.2E-30 4.8E-35 266.4 21.4 345 1-407 252-635 (639)
70 KOG0404 Thioredoxin reductase 100.0 6E-30 1.3E-34 215.2 16.4 289 62-405 8-317 (322)
71 PRK12771 putative glutamate sy 100.0 4.8E-29 1E-33 253.8 21.0 333 1-407 82-444 (564)
72 TIGR01372 soxA sarcosine oxida 100.0 1.1E-27 2.3E-32 256.8 27.0 286 61-405 162-470 (985)
73 PLN02852 ferredoxin-NADP+ redu 100.0 4.6E-28 1E-32 237.7 21.1 304 61-406 25-421 (491)
74 COG0446 HcaD Uncharacterized N 100.0 1.7E-26 3.6E-31 228.1 27.6 290 65-404 1-309 (415)
75 COG3634 AhpF Alkyl hydroperoxi 100.0 3E-28 6.5E-33 217.7 10.8 282 61-406 210-514 (520)
76 KOG3851 Sulfide:quinone oxidor 100.0 1E-27 2.2E-32 212.0 13.9 304 59-403 36-357 (446)
77 PLN02172 flavin-containing mon 99.9 1.8E-26 4E-31 227.3 20.0 274 62-402 10-348 (461)
78 KOG1346 Programmed cell death 99.9 2.5E-26 5.5E-31 209.7 18.1 311 61-412 177-531 (659)
79 COG0493 GltD NADPH-dependent g 99.9 2.9E-24 6.3E-29 208.9 14.9 344 2-403 66-447 (457)
80 PF00743 FMO-like: Flavin-bind 99.9 3.9E-24 8.4E-29 213.5 15.2 288 63-403 2-393 (531)
81 KOG0399 Glutamate synthase [Am 99.9 8.9E-24 1.9E-28 212.0 12.8 346 1-405 1729-2118(2142)
82 PRK06567 putative bifunctional 99.9 2.1E-22 4.5E-27 207.1 20.5 346 1-406 313-769 (1028)
83 COG1148 HdrA Heterodisulfide r 99.9 4.1E-21 8.8E-26 179.3 21.4 363 13-411 73-549 (622)
84 PF07992 Pyr_redox_2: Pyridine 99.9 4.7E-23 1E-27 182.7 6.0 188 64-375 1-199 (201)
85 KOG2755 Oxidoreductase [Genera 99.8 1.6E-20 3.4E-25 162.3 11.7 255 64-375 1-322 (334)
86 COG2072 TrkA Predicted flavopr 99.8 7.1E-19 1.5E-23 172.9 19.7 174 60-277 6-208 (443)
87 KOG1399 Flavin-containing mono 99.8 4.6E-19 9.9E-24 171.7 13.2 232 61-342 5-277 (448)
88 KOG1800 Ferredoxin/adrenodoxin 99.8 3.3E-18 7.2E-23 155.6 16.4 302 62-407 20-407 (468)
89 PF13738 Pyr_redox_3: Pyridine 99.8 2.8E-19 6E-24 158.8 6.0 167 66-277 1-200 (203)
90 COG3486 IucD Lysine/ornithine 99.7 6.4E-16 1.4E-20 142.9 21.8 296 60-398 3-407 (436)
91 PF13434 K_oxygenase: L-lysine 99.7 2.9E-17 6.2E-22 155.9 12.8 177 63-277 3-225 (341)
92 PTZ00188 adrenodoxin reductase 99.7 3.3E-16 7.1E-21 151.7 16.3 39 61-99 38-77 (506)
93 PRK05329 anaerobic glycerol-3- 99.5 6.6E-14 1.4E-18 136.0 14.2 157 234-405 219-419 (422)
94 COG4529 Uncharacterized protei 99.3 6.8E-10 1.5E-14 106.2 22.3 173 63-276 2-230 (474)
95 PF00070 Pyr_redox: Pyridine n 99.3 6.1E-11 1.3E-15 88.0 10.0 74 232-319 1-80 (80)
96 COG2081 Predicted flavoprotein 99.1 2.2E-10 4.8E-15 106.8 10.2 112 61-181 2-166 (408)
97 PRK09897 hypothetical protein; 99.1 6.3E-10 1.4E-14 111.4 13.7 182 63-276 2-244 (534)
98 PF03486 HI0933_like: HI0933-l 99.0 7.8E-10 1.7E-14 107.4 7.4 35 63-97 1-35 (409)
99 PLN02463 lycopene beta cyclase 98.9 6.4E-09 1.4E-13 102.6 11.4 115 61-184 27-171 (447)
100 COG0644 FixC Dehydrogenases (f 98.9 3.9E-09 8.5E-14 103.4 8.9 40 61-100 2-41 (396)
101 TIGR03378 glycerol3P_GlpB glyc 98.9 1.1E-07 2.5E-12 91.6 18.4 118 283-403 262-419 (419)
102 TIGR02032 GG-red-SF geranylger 98.9 7.3E-09 1.6E-13 97.3 8.6 35 63-97 1-35 (295)
103 PLN00093 geranylgeranyl diphos 98.8 2.5E-08 5.3E-13 98.9 11.9 36 60-95 37-72 (450)
104 PRK10157 putative oxidoreducta 98.8 1E-08 2.2E-13 101.4 9.2 37 61-97 4-40 (428)
105 PRK10015 oxidoreductase; Provi 98.8 1.5E-08 3.2E-13 100.2 9.4 37 61-97 4-40 (429)
106 TIGR00551 nadB L-aspartate oxi 98.8 5.2E-08 1.1E-12 98.1 13.3 55 349-405 333-388 (488)
107 PF01134 GIDA: Glucose inhibit 98.8 1.4E-08 3.1E-13 96.7 8.1 109 64-180 1-150 (392)
108 PRK05192 tRNA uridine 5-carbox 98.8 2.9E-08 6.3E-13 99.7 10.3 113 61-181 3-156 (618)
109 PRK09231 fumarate reductase fl 98.8 5.9E-07 1.3E-11 92.1 19.2 56 349-406 358-414 (582)
110 PLN02697 lycopene epsilon cycl 98.7 6.9E-08 1.5E-12 96.9 11.8 114 61-182 107-248 (529)
111 PRK08773 2-octaprenyl-3-methyl 98.7 4E-08 8.7E-13 96.4 9.9 37 60-96 4-40 (392)
112 TIGR02023 BchP-ChlP geranylger 98.7 4.4E-08 9.6E-13 95.8 10.0 32 63-94 1-32 (388)
113 PRK08071 L-aspartate oxidase; 98.7 1.6E-07 3.5E-12 94.8 14.3 34 62-96 3-36 (510)
114 COG0029 NadB Aspartate oxidase 98.7 4.8E-08 1E-12 93.6 9.4 56 349-405 341-396 (518)
115 PRK04176 ribulose-1,5-biphosph 98.7 4.5E-08 9.7E-13 89.6 8.9 37 61-97 24-60 (257)
116 TIGR01790 carotene-cycl lycope 98.7 4.4E-08 9.6E-13 95.9 9.4 110 64-182 1-141 (388)
117 PRK07364 2-octaprenyl-6-methox 98.7 5.3E-08 1.1E-12 96.3 9.7 35 62-96 18-52 (415)
118 PF01266 DAO: FAD dependent ox 98.7 3.5E-07 7.6E-12 88.2 15.1 61 283-344 146-212 (358)
119 PRK06069 sdhA succinate dehydr 98.7 1.1E-06 2.3E-11 90.4 19.1 35 62-96 5-42 (577)
120 PRK06847 hypothetical protein; 98.7 4.8E-08 1E-12 95.2 8.7 36 61-96 3-38 (375)
121 COG1635 THI4 Ribulose 1,5-bisp 98.7 3E-08 6.6E-13 84.8 6.2 46 62-107 30-75 (262)
122 TIGR00292 thiazole biosynthesi 98.7 6.4E-08 1.4E-12 88.2 8.9 38 61-98 20-57 (254)
123 TIGR01176 fum_red_Fp fumarate 98.7 2.1E-06 4.6E-11 87.9 20.4 56 349-406 357-413 (580)
124 PRK07395 L-aspartate oxidase; 98.7 1.2E-07 2.6E-12 96.4 11.2 36 61-97 8-43 (553)
125 PF05834 Lycopene_cycl: Lycope 98.7 1.6E-07 3.4E-12 91.3 10.7 111 64-183 1-143 (374)
126 PRK07494 2-octaprenyl-6-methox 98.6 1.3E-07 2.7E-12 92.7 9.9 37 60-96 5-41 (388)
127 PRK06834 hypothetical protein; 98.6 8.1E-08 1.8E-12 96.4 8.7 36 61-96 2-37 (488)
128 PRK07608 ubiquinone biosynthes 98.6 1.4E-07 3E-12 92.4 10.2 36 62-97 5-40 (388)
129 PRK09077 L-aspartate oxidase; 98.6 2.2E-07 4.8E-12 94.5 11.8 55 349-405 353-408 (536)
130 TIGR01292 TRX_reduct thioredox 98.6 3E-07 6.6E-12 86.5 12.1 91 232-336 2-113 (300)
131 PRK12842 putative succinate de 98.6 2.2E-08 4.7E-13 102.7 4.6 39 61-99 8-46 (574)
132 TIGR02028 ChlP geranylgeranyl 98.6 1.3E-07 2.8E-12 92.8 9.6 34 63-96 1-34 (398)
133 PRK06184 hypothetical protein; 98.6 8.1E-08 1.8E-12 97.2 8.4 36 62-97 3-38 (502)
134 PRK13800 putative oxidoreducta 98.6 2.9E-07 6.3E-12 99.1 12.7 48 349-405 361-408 (897)
135 PRK07236 hypothetical protein; 98.6 1.8E-07 3.8E-12 91.6 9.8 37 60-96 4-40 (386)
136 PLN02661 Putative thiazole syn 98.6 3.9E-07 8.4E-12 85.7 11.3 37 61-97 91-128 (357)
137 PRK09126 hypothetical protein; 98.6 2E-07 4.4E-12 91.4 10.0 35 62-96 3-37 (392)
138 COG0579 Predicted dehydrogenas 98.6 7.5E-07 1.6E-11 86.1 13.4 63 285-347 154-223 (429)
139 PRK08849 2-octaprenyl-3-methyl 98.6 1.7E-07 3.8E-12 91.6 9.0 34 62-95 3-36 (384)
140 PLN02815 L-aspartate oxidase 98.6 4.4E-06 9.6E-11 85.5 19.1 35 62-97 29-63 (594)
141 PRK05714 2-octaprenyl-3-methyl 98.6 2.8E-07 6E-12 90.8 10.1 34 62-95 2-35 (405)
142 PRK07190 hypothetical protein; 98.6 1.9E-07 4.2E-12 93.6 8.6 36 61-96 4-39 (487)
143 COG3380 Predicted NAD/FAD-depe 98.6 1.4E-07 3E-12 83.3 6.5 35 63-97 2-36 (331)
144 PRK07333 2-octaprenyl-6-methox 98.6 1.7E-07 3.7E-12 92.3 7.9 34 63-96 2-37 (403)
145 PRK07251 pyridine nucleotide-d 98.5 3.6E-07 7.9E-12 90.9 10.3 99 62-185 157-256 (438)
146 PRK07512 L-aspartate oxidase; 98.5 3.3E-06 7.1E-11 85.5 17.3 55 349-405 341-396 (513)
147 PRK08244 hypothetical protein; 98.5 1.9E-07 4.1E-12 94.4 8.3 35 62-96 2-36 (493)
148 PRK07843 3-ketosteroid-delta-1 98.5 1.7E-07 3.7E-12 95.7 8.1 91 232-336 162-271 (557)
149 COG0654 UbiH 2-polyprenyl-6-me 98.5 2.5E-07 5.3E-12 90.5 8.8 33 62-94 2-34 (387)
150 PRK08163 salicylate hydroxylas 98.5 3.1E-07 6.7E-12 90.2 9.1 36 62-97 4-39 (396)
151 PRK08850 2-octaprenyl-6-methox 98.5 5E-07 1.1E-11 89.0 10.3 33 62-94 4-36 (405)
152 PRK08013 oxidoreductase; Provi 98.5 4.9E-07 1.1E-11 88.9 10.2 35 62-96 3-37 (400)
153 PRK11445 putative oxidoreducta 98.5 4.2E-07 9.2E-12 87.6 9.6 34 62-96 1-34 (351)
154 PRK05732 2-octaprenyl-6-methox 98.5 4.7E-07 1E-11 88.9 10.0 34 61-94 2-38 (395)
155 PRK07045 putative monooxygenas 98.5 4.2E-07 9.2E-12 89.0 9.6 37 61-97 4-40 (388)
156 PRK06912 acoL dihydrolipoamide 98.5 6.4E-07 1.4E-11 89.6 10.4 101 62-185 170-271 (458)
157 PRK06185 hypothetical protein; 98.5 4.1E-07 8.8E-12 89.7 8.9 36 60-95 4-39 (407)
158 PRK08020 ubiF 2-octaprenyl-3-m 98.5 7.9E-07 1.7E-11 87.2 10.6 35 61-95 4-38 (391)
159 PF00070 Pyr_redox: Pyridine n 98.5 4.7E-07 1E-11 67.0 6.7 73 64-151 1-74 (80)
160 PF12831 FAD_oxidored: FAD dep 98.5 9.8E-08 2.1E-12 94.4 3.9 36 64-99 1-36 (428)
161 PF01494 FAD_binding_3: FAD bi 98.5 1.7E-07 3.8E-12 90.2 5.5 35 63-97 2-36 (356)
162 PRK08401 L-aspartate oxidase; 98.5 7.7E-07 1.7E-11 89.0 10.1 33 63-95 2-34 (466)
163 PRK05976 dihydrolipoamide dehy 98.5 8.5E-07 1.8E-11 89.1 10.3 103 62-186 180-285 (472)
164 PRK06753 hypothetical protein; 98.5 8.1E-07 1.7E-11 86.5 9.8 35 63-97 1-35 (373)
165 TIGR01350 lipoamide_DH dihydro 98.4 8.2E-07 1.8E-11 89.1 9.8 102 62-185 170-272 (461)
166 PRK06126 hypothetical protein; 98.4 1E-06 2.2E-11 90.3 10.7 36 61-96 6-41 (545)
167 PRK05868 hypothetical protein; 98.4 1.3E-06 2.9E-11 84.8 11.0 35 63-97 2-36 (372)
168 TIGR01984 UbiH 2-polyprenyl-6- 98.4 6E-07 1.3E-11 87.7 8.6 33 64-96 1-34 (382)
169 PRK09754 phenylpropionate diox 98.4 1.3E-06 2.9E-11 85.6 10.8 94 231-336 4-113 (396)
170 TIGR01988 Ubi-OHases Ubiquinon 98.4 1E-06 2.2E-11 86.1 9.8 33 64-96 1-33 (385)
171 PRK06416 dihydrolipoamide dehy 98.4 1.2E-06 2.5E-11 88.0 10.4 104 62-186 172-276 (462)
172 PF01946 Thi4: Thi4 family; PD 98.4 1.3E-07 2.9E-12 81.5 3.0 38 62-99 17-54 (230)
173 PF13450 NAD_binding_8: NAD(P) 98.4 2.3E-07 5E-12 66.0 3.6 32 67-98 1-32 (68)
174 TIGR00275 flavoprotein, HI0933 98.4 8E-07 1.7E-11 87.1 8.7 32 66-97 1-32 (400)
175 TIGR03364 HpnW_proposed FAD de 98.4 1.2E-06 2.6E-11 85.1 9.8 55 284-339 145-201 (365)
176 TIGR00136 gidA glucose-inhibit 98.4 1.4E-06 3.1E-11 87.6 10.3 33 63-95 1-33 (617)
177 PF13454 NAD_binding_9: FAD-NA 98.4 5.1E-07 1.1E-11 76.2 6.1 31 66-96 1-36 (156)
178 COG1249 Lpd Pyruvate/2-oxoglut 98.4 1.7E-06 3.8E-11 84.9 10.5 103 62-186 173-276 (454)
179 PRK13977 myosin-cross-reactive 98.4 6.6E-06 1.4E-10 82.3 14.5 40 61-100 21-64 (576)
180 PTZ00383 malate:quinone oxidor 98.4 5.6E-06 1.2E-10 82.8 14.0 62 284-346 211-284 (497)
181 PRK07588 hypothetical protein; 98.4 1.1E-06 2.5E-11 86.1 9.0 35 63-97 1-35 (391)
182 PRK04965 NADH:flavorubredoxin 98.4 1.8E-06 3.8E-11 84.2 10.3 100 62-184 141-241 (377)
183 PRK08132 FAD-dependent oxidore 98.4 1.4E-06 3E-11 89.3 9.6 36 61-96 22-57 (547)
184 TIGR02053 MerA mercuric reduct 98.4 1.8E-06 4E-11 86.5 10.0 103 63-186 167-270 (463)
185 PRK08243 4-hydroxybenzoate 3-m 98.4 1.5E-06 3.3E-11 85.2 9.1 35 62-96 2-36 (392)
186 PRK06183 mhpA 3-(3-hydroxyphen 98.4 1.1E-06 2.3E-11 89.9 8.3 36 61-96 9-44 (538)
187 PRK06617 2-octaprenyl-6-methox 98.3 1.7E-06 3.8E-11 84.2 9.1 32 63-94 2-33 (374)
188 TIGR03385 CoA_CoA_reduc CoA-di 98.3 1.9E-06 4.2E-11 85.5 9.6 99 62-185 137-236 (427)
189 TIGR03169 Nterm_to_SelD pyridi 98.3 2.6E-06 5.7E-11 82.6 10.0 94 232-336 1-108 (364)
190 COG0445 GidA Flavin-dependent 98.3 9.3E-07 2E-11 85.8 6.6 112 62-181 4-157 (621)
191 PRK06370 mercuric reductase; V 98.3 2.7E-06 5.8E-11 85.3 10.3 101 62-185 171-274 (463)
192 PRK06475 salicylate hydroxylas 98.3 2.1E-06 4.5E-11 84.5 9.3 34 63-96 3-36 (400)
193 PLN02985 squalene monooxygenas 98.3 3.2E-06 6.9E-11 85.3 10.7 36 60-95 41-76 (514)
194 PRK05249 soluble pyridine nucl 98.3 3.2E-06 6.9E-11 84.8 9.9 100 62-185 175-275 (461)
195 PRK07846 mycothione reductase; 98.3 4.9E-06 1.1E-10 83.0 10.8 100 62-186 166-266 (451)
196 TIGR01424 gluta_reduc_2 glutat 98.3 3.8E-06 8.2E-11 83.8 10.1 100 62-185 166-266 (446)
197 PRK07818 dihydrolipoamide dehy 98.3 4.1E-06 9E-11 84.0 10.1 103 62-185 172-276 (466)
198 PRK06327 dihydrolipoamide dehy 98.3 5.1E-06 1.1E-10 83.5 10.6 104 62-186 183-288 (475)
199 PRK06116 glutathione reductase 98.3 4.4E-06 9.5E-11 83.5 10.1 101 62-186 167-269 (450)
200 PRK14694 putative mercuric red 98.3 5.1E-06 1.1E-10 83.3 10.5 98 62-185 178-276 (468)
201 TIGR01789 lycopene_cycl lycope 98.3 3.8E-06 8.3E-11 81.4 9.1 33 64-96 1-35 (370)
202 PRK06996 hypothetical protein; 98.3 3E-06 6.6E-11 83.2 8.5 36 60-95 9-48 (398)
203 PRK09564 coenzyme A disulfide 98.2 4.8E-06 1E-10 83.1 10.0 99 62-184 149-248 (444)
204 COG0446 HcaD Uncharacterized N 98.2 3.8E-06 8.3E-11 82.8 8.9 100 62-183 136-238 (415)
205 PRK06115 dihydrolipoamide dehy 98.2 5.9E-06 1.3E-10 82.8 10.2 103 62-185 174-279 (466)
206 TIGR03219 salicylate_mono sali 98.2 5.4E-06 1.2E-10 81.9 9.8 35 63-97 1-36 (414)
207 TIGR00137 gid_trmFO tRNA:m(5)U 98.2 2E-06 4.4E-11 83.5 6.5 33 64-96 2-34 (433)
208 TIGR01421 gluta_reduc_1 glutat 98.2 4.8E-06 1E-10 83.0 9.5 101 62-185 166-268 (450)
209 PTZ00318 NADH dehydrogenase-li 98.2 6.5E-06 1.4E-10 81.5 10.3 92 231-336 11-126 (424)
210 PRK11728 hydroxyglutarate oxid 98.2 5.8E-06 1.3E-10 81.1 9.9 34 62-95 2-37 (393)
211 COG2081 Predicted flavoprotein 98.2 1.4E-05 3.1E-10 75.1 11.7 61 286-346 113-188 (408)
212 PRK04176 ribulose-1,5-biphosph 98.2 4.2E-05 9.2E-10 70.0 14.7 157 232-406 27-254 (257)
213 PLN02507 glutathione reductase 98.2 6.3E-06 1.4E-10 83.1 10.0 101 62-186 203-304 (499)
214 PRK08010 pyridine nucleotide-d 98.2 7.5E-06 1.6E-10 81.6 10.3 99 62-185 158-257 (441)
215 PRK07845 flavoprotein disulfid 98.2 7.4E-06 1.6E-10 82.1 9.9 100 63-186 178-278 (466)
216 TIGR03452 mycothione_red mycot 98.2 9.8E-06 2.1E-10 80.9 10.7 100 62-186 169-269 (452)
217 PRK13512 coenzyme A disulfide 98.2 6.6E-06 1.4E-10 81.8 9.2 95 63-185 149-244 (438)
218 PRK06175 L-aspartate oxidase; 98.2 1.4E-05 3E-10 79.2 11.0 55 349-405 331-386 (433)
219 PTZ00367 squalene epoxidase; P 98.2 1.1E-05 2.3E-10 82.2 10.2 35 61-95 32-66 (567)
220 PTZ00058 glutathione reductase 98.2 1E-05 2.2E-10 82.3 9.9 101 62-185 237-339 (561)
221 TIGR01989 COQ6 Ubiquinone bios 98.2 1E-05 2.2E-10 80.5 9.8 32 63-94 1-36 (437)
222 PRK13339 malate:quinone oxidor 98.1 0.00013 2.7E-09 73.0 17.5 62 284-345 184-257 (497)
223 KOG0029 Amine oxidase [Seconda 98.1 1.9E-06 4.2E-11 85.8 4.5 41 60-100 13-53 (501)
224 TIGR00292 thiazole biosynthesi 98.1 0.00012 2.6E-09 66.9 15.5 156 232-405 23-252 (254)
225 PF04820 Trp_halogenase: Trypt 98.1 4.1E-06 8.9E-11 83.2 6.2 32 64-95 1-35 (454)
226 TIGR02374 nitri_red_nirB nitri 98.1 1.2E-05 2.5E-10 85.6 9.9 101 62-185 140-241 (785)
227 COG1252 Ndh NADH dehydrogenase 98.1 1.6E-05 3.4E-10 76.5 9.6 95 231-337 4-113 (405)
228 PRK14989 nitrite reductase sub 98.1 1.1E-05 2.4E-10 85.9 9.3 100 62-184 145-247 (847)
229 PRK06467 dihydrolipoamide dehy 98.1 1.4E-05 3E-10 80.3 9.5 101 63-185 175-277 (471)
230 TIGR01423 trypano_reduc trypan 98.1 1.5E-05 3.2E-10 80.0 9.8 100 62-185 187-291 (486)
231 PRK14727 putative mercuric red 98.1 1.7E-05 3.8E-10 79.7 10.0 98 62-185 188-286 (479)
232 PRK13748 putative mercuric red 98.1 1.5E-05 3.4E-10 81.9 9.9 98 62-185 270-368 (561)
233 COG2509 Uncharacterized FAD-de 98.1 0.00013 2.8E-09 69.7 15.0 72 277-348 166-247 (486)
234 COG1233 Phytoene dehydrogenase 98.1 3E-06 6.6E-11 85.1 4.4 39 61-99 2-40 (487)
235 TIGR03140 AhpF alkyl hydropero 98.1 3.3E-05 7.2E-10 78.4 11.8 92 231-336 213-324 (515)
236 PRK06292 dihydrolipoamide dehy 98.1 1.8E-05 3.9E-10 79.4 9.5 102 62-186 169-272 (460)
237 PRK15317 alkyl hydroperoxide r 98.1 3.8E-05 8.3E-10 78.0 12.0 92 231-336 212-323 (517)
238 PRK09853 putative selenate red 98.0 3.5E-05 7.5E-10 82.2 11.7 90 228-336 537-636 (1019)
239 KOG1336 Monodehydroascorbate/f 98.0 2.2E-05 4.9E-10 75.2 9.2 105 62-188 213-319 (478)
240 TIGR01438 TGR thioredoxin and 98.0 2.6E-05 5.7E-10 78.4 9.6 101 63-185 181-282 (484)
241 PRK12779 putative bifunctional 98.0 2.2E-05 4.7E-10 84.5 9.4 92 228-336 304-406 (944)
242 PRK07208 hypothetical protein; 98.0 5.2E-06 1.1E-10 83.7 4.5 40 60-99 2-41 (479)
243 PTZ00052 thioredoxin reductase 98.0 3.3E-05 7.1E-10 78.0 10.2 99 63-186 183-282 (499)
244 TIGR02360 pbenz_hydroxyl 4-hyd 98.0 6.1E-06 1.3E-10 80.8 4.1 35 62-96 2-36 (390)
245 PRK11749 dihydropyrimidine deh 98.0 2.9E-05 6.3E-10 77.7 9.0 89 228-334 138-236 (457)
246 PRK11883 protoporphyrinogen ox 97.9 6.4E-06 1.4E-10 82.4 4.0 37 63-99 1-39 (451)
247 COG3349 Uncharacterized conser 97.9 7.6E-06 1.7E-10 79.6 3.8 37 63-99 1-37 (485)
248 PLN02546 glutathione reductase 97.9 4.5E-05 9.7E-10 77.7 9.4 100 62-185 252-353 (558)
249 PTZ00153 lipoamide dehydrogena 97.9 5.8E-05 1.3E-09 78.0 10.3 110 62-186 312-431 (659)
250 PRK06847 hypothetical protein; 97.9 0.00013 2.9E-09 71.0 11.9 53 284-336 107-164 (375)
251 PLN02268 probable polyamine ox 97.9 1.1E-05 2.4E-10 80.2 4.3 38 63-100 1-38 (435)
252 PRK05335 tRNA (uracil-5-)-meth 97.9 1.1E-05 2.5E-10 77.9 4.1 35 62-96 2-36 (436)
253 PF03486 HI0933_like: HI0933-l 97.9 7.7E-05 1.7E-09 72.8 9.8 61 286-346 111-187 (409)
254 PRK10262 thioredoxin reductase 97.9 9.9E-05 2.2E-09 70.3 10.3 102 62-185 146-251 (321)
255 KOG2311 NAD/FAD-utilizing prot 97.9 3.1E-05 6.7E-10 73.9 6.5 34 61-94 27-60 (679)
256 PRK07538 hypothetical protein; 97.8 1.3E-05 2.8E-10 79.2 4.1 34 63-96 1-34 (413)
257 PRK07233 hypothetical protein; 97.8 1.2E-05 2.6E-10 80.0 3.9 37 64-100 1-37 (434)
258 TIGR01316 gltA glutamate synth 97.8 4.4E-05 9.6E-10 76.1 7.6 90 229-336 132-232 (449)
259 PRK12770 putative glutamate sy 97.8 5.8E-05 1.3E-09 72.8 8.2 93 228-334 16-129 (352)
260 PRK11259 solA N-methyltryptoph 97.8 1.6E-05 3.5E-10 77.5 4.3 35 62-96 3-37 (376)
261 TIGR00562 proto_IX_ox protopor 97.8 1.6E-05 3.5E-10 79.8 4.2 38 62-99 2-43 (462)
262 COG1635 THI4 Ribulose 1,5-bisp 97.8 0.00036 7.8E-09 60.3 11.6 156 232-405 32-258 (262)
263 PLN02576 protoporphyrinogen ox 97.8 1.8E-05 4E-10 80.1 4.4 38 62-99 12-50 (496)
264 KOG2415 Electron transfer flav 97.8 2.3E-05 5.1E-10 73.5 4.5 41 60-100 74-120 (621)
265 PLN02463 lycopene beta cyclase 97.8 0.00017 3.6E-09 71.5 10.8 90 232-335 30-169 (447)
266 TIGR03143 AhpF_homolog putativ 97.8 0.00016 3.5E-09 74.1 11.1 90 232-336 6-115 (555)
267 PRK08294 phenol 2-monooxygenas 97.8 3.3E-05 7.1E-10 80.1 6.0 36 61-96 31-67 (634)
268 PRK13369 glycerol-3-phosphate 97.8 2.2E-05 4.7E-10 79.5 4.6 37 60-96 4-40 (502)
269 PF13738 Pyr_redox_3: Pyridine 97.8 0.00011 2.3E-09 64.9 8.6 87 234-334 1-137 (203)
270 PRK12266 glpD glycerol-3-phosp 97.8 2.4E-05 5.2E-10 79.2 4.8 36 61-96 5-40 (508)
271 TIGR00031 UDP-GALP_mutase UDP- 97.8 2.4E-05 5.1E-10 75.4 4.4 36 63-98 2-37 (377)
272 PRK12831 putative oxidoreducta 97.7 7.5E-05 1.6E-09 74.7 7.7 92 228-336 138-242 (464)
273 PRK12409 D-amino acid dehydrog 97.7 2.5E-05 5.4E-10 77.1 4.2 34 63-96 2-35 (410)
274 PLN02568 polyamine oxidase 97.7 3E-05 6.5E-10 78.6 4.8 39 61-99 4-47 (539)
275 PRK12778 putative bifunctional 97.7 8E-05 1.7E-09 79.2 8.2 92 228-336 429-531 (752)
276 PRK08274 tricarballylate dehyd 97.7 2.7E-05 5.9E-10 78.2 4.4 35 61-95 3-37 (466)
277 PLN02927 antheraxanthin epoxid 97.7 2.7E-05 5.9E-10 80.0 4.4 35 61-95 80-114 (668)
278 TIGR02733 desat_CrtD C-3',4' d 97.7 2.7E-05 5.8E-10 78.8 4.3 37 63-99 2-38 (492)
279 KOG1335 Dihydrolipoamide dehyd 97.7 9.6E-05 2.1E-09 68.8 7.4 103 62-185 211-317 (506)
280 COG0665 DadA Glycine/D-amino a 97.7 2.9E-05 6.4E-10 75.9 4.4 36 61-96 3-38 (387)
281 PRK12416 protoporphyrinogen ox 97.7 2.6E-05 5.6E-10 78.3 4.0 38 63-100 2-45 (463)
282 COG1232 HemY Protoporphyrinoge 97.7 2.5E-05 5.4E-10 76.2 3.7 36 63-98 1-38 (444)
283 PRK12775 putative trifunctiona 97.7 8.6E-05 1.9E-09 80.7 8.1 91 229-336 429-531 (1006)
284 TIGR01377 soxA_mon sarcosine o 97.7 2.8E-05 6.1E-10 75.9 4.0 60 284-344 145-209 (380)
285 TIGR03315 Se_ygfK putative sel 97.7 0.00014 3.1E-09 77.9 9.5 89 229-336 536-634 (1012)
286 PF01134 GIDA: Glucose inhibit 97.7 0.00023 5E-09 68.3 9.9 88 232-333 1-150 (392)
287 PLN00128 Succinate dehydrogena 97.7 4.2E-05 9.2E-10 79.1 5.2 36 61-96 49-84 (635)
288 COG0492 TrxB Thioredoxin reduc 97.7 0.00035 7.6E-09 65.4 10.7 90 232-336 5-116 (305)
289 PF00890 FAD_binding_2: FAD bi 97.7 3.6E-05 7.8E-10 76.2 4.3 34 64-97 1-34 (417)
290 PRK06481 fumarate reductase fl 97.7 4.3E-05 9.3E-10 77.4 4.8 37 61-97 60-96 (506)
291 TIGR02731 phytoene_desat phyto 97.7 3.3E-05 7.2E-10 77.3 3.9 36 64-99 1-36 (453)
292 TIGR02734 crtI_fam phytoene de 97.7 3E-05 6.5E-10 78.7 3.6 51 284-334 219-275 (502)
293 PF07992 Pyr_redox_2: Pyridine 97.7 4.5E-05 9.6E-10 67.2 4.2 91 232-336 1-123 (201)
294 PLN02852 ferredoxin-NADP+ redu 97.7 0.00013 2.8E-09 72.7 7.8 91 229-336 25-127 (491)
295 TIGR01318 gltD_gamma_fam gluta 97.7 0.00014 3E-09 72.8 8.1 89 229-336 140-239 (467)
296 PLN02172 flavin-containing mon 97.6 0.00094 2E-08 66.6 13.7 92 231-336 11-176 (461)
297 PLN02529 lysine-specific histo 97.6 5.3E-05 1.2E-09 78.8 4.9 39 61-99 159-197 (738)
298 TIGR03329 Phn_aa_oxid putative 97.6 6.7E-05 1.5E-09 75.1 5.1 35 61-95 23-59 (460)
299 PRK07121 hypothetical protein; 97.6 8.5E-05 1.8E-09 75.1 5.9 36 62-97 20-55 (492)
300 TIGR02730 carot_isom carotene 97.6 5.8E-05 1.2E-09 76.4 4.1 51 284-334 229-285 (493)
301 PRK08641 sdhA succinate dehydr 97.6 5.9E-05 1.3E-09 77.6 4.1 35 62-96 3-37 (589)
302 KOG2820 FAD-dependent oxidored 97.6 0.00025 5.4E-09 65.1 7.5 34 61-94 6-39 (399)
303 PRK01438 murD UDP-N-acetylmura 97.6 0.00029 6.3E-09 71.0 8.8 84 231-346 17-105 (480)
304 TIGR01317 GOGAT_sm_gam glutama 97.5 0.00023 4.9E-09 71.6 7.9 88 229-334 142-239 (485)
305 KOG1298 Squalene monooxygenase 97.5 0.00033 7.2E-09 65.4 8.1 34 61-94 44-77 (509)
306 TIGR01813 flavo_cyto_c flavocy 97.5 6.7E-05 1.4E-09 74.8 3.9 34 64-97 1-35 (439)
307 PLN02328 lysine-specific histo 97.5 9.1E-05 2E-09 77.6 4.9 40 60-99 236-275 (808)
308 PLN02487 zeta-carotene desatur 97.5 0.00011 2.4E-09 74.7 5.3 38 61-98 74-111 (569)
309 COG1231 Monoamine oxidase [Ami 97.5 0.00011 2.3E-09 70.5 4.9 41 60-100 5-45 (450)
310 PRK07236 hypothetical protein; 97.5 0.00055 1.2E-08 67.0 10.0 91 232-336 8-155 (386)
311 PRK12810 gltD glutamate syntha 97.5 0.00028 6E-09 70.9 8.1 89 229-335 142-240 (471)
312 PRK11101 glpA sn-glycerol-3-ph 97.5 9.1E-05 2E-09 75.7 4.6 34 62-95 6-39 (546)
313 PLN02676 polyamine oxidase 97.5 9E-05 1.9E-09 74.5 4.5 39 61-99 25-64 (487)
314 PRK00711 D-amino acid dehydrog 97.5 7.9E-05 1.7E-09 73.7 4.1 59 284-343 201-265 (416)
315 PRK09078 sdhA succinate dehydr 97.5 8.9E-05 1.9E-09 76.5 4.6 35 61-95 11-45 (598)
316 PRK12814 putative NADPH-depend 97.5 0.00022 4.8E-09 74.4 7.4 90 229-336 192-291 (652)
317 TIGR01789 lycopene_cycl lycope 97.5 0.00062 1.3E-08 66.0 10.1 91 233-335 2-138 (370)
318 PRK07804 L-aspartate oxidase; 97.5 0.00011 2.4E-09 74.9 5.1 37 61-97 15-51 (541)
319 KOG0685 Flavin-containing amin 97.5 8.6E-05 1.9E-09 71.2 3.9 39 62-100 21-60 (498)
320 COG2907 Predicted NAD/FAD-bind 97.5 9.4E-05 2E-09 68.0 3.8 38 62-100 8-45 (447)
321 PRK08773 2-octaprenyl-3-methyl 97.5 0.0013 2.9E-08 64.4 12.3 51 286-336 115-170 (392)
322 TIGR02032 GG-red-SF geranylger 97.5 0.0013 2.8E-08 61.5 11.7 91 232-336 2-149 (295)
323 PRK01438 murD UDP-N-acetylmura 97.5 0.0002 4.3E-09 72.2 6.5 34 62-95 16-49 (480)
324 KOG2614 Kynurenine 3-monooxyge 97.5 0.00011 2.4E-09 69.5 4.1 36 62-97 2-37 (420)
325 KOG2495 NADH-dehydrogenase (ub 97.5 0.00011 2.3E-09 69.5 4.0 98 63-184 219-331 (491)
326 PRK06834 hypothetical protein; 97.5 0.0016 3.5E-08 65.6 12.7 51 286-336 102-157 (488)
327 PRK08255 salicylyl-CoA 5-hydro 97.4 9.7E-05 2.1E-09 78.5 3.9 34 63-96 1-36 (765)
328 TIGR02732 zeta_caro_desat caro 97.4 9.9E-05 2.2E-09 74.0 3.8 35 64-98 1-35 (474)
329 TIGR01373 soxB sarcosine oxida 97.4 0.00013 2.9E-09 71.8 4.6 35 61-95 29-65 (407)
330 PRK06452 sdhA succinate dehydr 97.4 0.00011 2.5E-09 75.2 4.2 36 61-96 4-39 (566)
331 PRK12835 3-ketosteroid-delta-1 97.4 0.00015 3.3E-09 74.6 4.8 38 61-98 10-47 (584)
332 PRK12834 putative FAD-binding 97.4 0.00014 3E-09 74.5 4.4 35 61-95 3-37 (549)
333 PRK12809 putative oxidoreducta 97.4 0.0004 8.7E-09 72.4 7.9 89 229-336 309-408 (639)
334 PTZ00139 Succinate dehydrogena 97.4 0.00013 2.8E-09 75.5 4.2 36 61-96 28-63 (617)
335 PRK07057 sdhA succinate dehydr 97.4 0.00016 3.5E-09 74.5 4.7 34 62-95 12-45 (591)
336 PRK07803 sdhA succinate dehydr 97.4 0.00012 2.7E-09 75.8 3.8 35 62-96 8-42 (626)
337 TIGR01790 carotene-cycl lycope 97.4 0.0016 3.5E-08 63.8 11.5 89 233-335 2-141 (388)
338 PRK01747 mnmC bifunctional tRN 97.4 0.00013 2.9E-09 76.5 4.0 35 62-96 260-294 (662)
339 PRK07573 sdhA succinate dehydr 97.4 0.00015 3.3E-09 75.2 4.4 36 61-96 34-69 (640)
340 PLN02464 glycerol-3-phosphate 97.4 0.00016 3.5E-09 74.9 4.5 36 61-96 70-105 (627)
341 PLN02612 phytoene desaturase 97.4 0.0002 4.4E-09 73.4 5.0 38 61-98 92-129 (567)
342 TIGR01812 sdhA_frdA_Gneg succi 97.4 0.00014 3E-09 74.9 3.8 33 64-96 1-33 (566)
343 COG3075 GlpB Anaerobic glycero 97.4 0.00018 3.8E-09 65.8 3.9 119 284-405 258-416 (421)
344 PRK12837 3-ketosteroid-delta-1 97.4 0.00015 3.2E-09 73.6 3.8 34 62-96 7-40 (513)
345 PLN02661 Putative thiazole syn 97.3 0.005 1.1E-07 58.3 13.6 159 232-407 94-328 (357)
346 PRK05945 sdhA succinate dehydr 97.3 0.00017 3.7E-09 74.2 4.0 35 62-96 3-39 (575)
347 PF00732 GMC_oxred_N: GMC oxid 97.3 0.00019 4E-09 67.5 3.8 35 63-97 1-36 (296)
348 PRK06854 adenylylsulfate reduc 97.3 0.00017 3.7E-09 74.6 3.8 35 62-96 11-47 (608)
349 PRK07333 2-octaprenyl-6-methox 97.3 0.0023 4.9E-08 63.0 11.6 52 285-336 112-168 (403)
350 PLN02697 lycopene epsilon cycl 97.3 0.0025 5.3E-08 64.5 11.8 91 231-335 109-248 (529)
351 PRK08626 fumarate reductase fl 97.3 0.00019 4E-09 74.8 3.9 35 62-96 5-39 (657)
352 PRK12769 putative oxidoreducta 97.3 0.00067 1.4E-08 71.0 8.1 90 229-336 326-425 (654)
353 PRK08958 sdhA succinate dehydr 97.3 0.00019 4.1E-09 73.9 3.9 35 62-96 7-41 (588)
354 PTZ00363 rab-GDP dissociation 97.3 0.00027 5.9E-09 69.8 4.8 53 284-336 232-291 (443)
355 PRK08163 salicylate hydroxylas 97.3 0.0024 5.1E-08 62.7 11.4 48 289-336 114-167 (396)
356 PTZ00188 adrenodoxin reductase 97.3 0.0012 2.5E-08 65.2 8.7 89 230-336 39-139 (506)
357 TIGR01320 mal_quin_oxido malat 97.3 0.00024 5.2E-09 71.3 3.9 62 284-345 178-250 (483)
358 TIGR02061 aprA adenosine phosp 97.3 0.00024 5.2E-09 73.0 4.0 33 64-96 1-37 (614)
359 COG0654 UbiH 2-polyprenyl-6-me 97.2 0.0028 6E-08 62.1 11.2 90 232-335 4-162 (387)
360 PRK08275 putative oxidoreducta 97.2 0.00024 5.2E-09 72.8 3.8 47 350-405 357-403 (554)
361 PRK05257 malate:quinone oxidor 97.2 0.00029 6.4E-09 70.8 4.3 62 284-345 183-256 (494)
362 PRK05714 2-octaprenyl-3-methyl 97.2 0.0025 5.3E-08 62.8 10.6 48 289-336 117-169 (405)
363 PRK12845 3-ketosteroid-delta-1 97.2 0.0004 8.7E-09 71.0 5.2 39 61-100 15-53 (564)
364 PRK12844 3-ketosteroid-delta-1 97.2 0.00028 6.2E-09 72.2 4.0 36 62-97 6-41 (557)
365 PRK09126 hypothetical protein; 97.2 0.0031 6.7E-08 61.8 10.9 41 296-336 123-168 (392)
366 PF13434 K_oxygenase: L-lysine 97.2 0.00051 1.1E-08 65.7 5.2 37 61-97 189-227 (341)
367 PRK05192 tRNA uridine 5-carbox 97.2 0.0026 5.7E-08 64.6 10.3 88 232-333 6-155 (618)
368 KOG2852 Possible oxidoreductas 97.2 0.00085 1.8E-08 60.3 5.9 35 61-95 9-49 (380)
369 COG0562 Glf UDP-galactopyranos 97.2 0.00042 9.1E-09 63.3 4.1 36 63-98 2-37 (374)
370 PRK06263 sdhA succinate dehydr 97.2 0.00033 7.1E-09 71.7 3.9 55 349-406 348-403 (543)
371 PRK07608 ubiquinone biosynthes 97.2 0.0044 9.6E-08 60.6 11.7 51 286-336 113-168 (388)
372 PRK12839 hypothetical protein; 97.2 0.00043 9.3E-09 71.0 4.7 37 61-97 7-43 (572)
373 TIGR02462 pyranose_ox pyranose 97.2 0.00038 8.2E-09 70.2 4.2 36 63-98 1-36 (544)
374 PRK07588 hypothetical protein; 97.1 0.0039 8.5E-08 61.1 11.2 40 297-336 115-159 (391)
375 PF05834 Lycopene_cycl: Lycope 97.1 0.003 6.5E-08 61.5 10.1 91 233-335 2-142 (374)
376 PTZ00306 NADH-dependent fumara 97.1 0.00048 1E-08 76.5 4.9 39 60-98 407-445 (1167)
377 KOG0404 Thioredoxin reductase 97.1 0.0033 7.2E-08 54.5 8.8 105 232-336 10-125 (322)
378 PRK06567 putative bifunctional 97.1 0.0011 2.3E-08 70.4 6.9 35 228-276 381-415 (1028)
379 PRK08205 sdhA succinate dehydr 97.1 0.00045 9.7E-09 71.2 4.0 33 62-95 5-37 (583)
380 KOG2755 Oxidoreductase [Genera 97.1 0.00073 1.6E-08 59.9 4.7 90 233-336 2-105 (334)
381 PRK13984 putative oxidoreducta 97.1 0.0014 3E-08 68.2 7.6 90 228-335 281-380 (604)
382 PRK06184 hypothetical protein; 97.1 0.0049 1.1E-07 62.5 11.4 50 286-335 111-168 (502)
383 TIGR01811 sdhA_Bsu succinate d 97.1 0.00035 7.7E-09 72.1 3.1 54 349-405 370-424 (603)
384 PLN03000 amine oxidase 97.1 0.00057 1.2E-08 71.9 4.5 40 61-100 183-222 (881)
385 PRK02106 choline dehydrogenase 97.0 0.00065 1.4E-08 69.8 4.8 36 61-96 4-40 (560)
386 COG0578 GlpA Glycerol-3-phosph 97.0 0.0007 1.5E-08 67.3 4.7 37 61-97 11-47 (532)
387 PRK07045 putative monooxygenas 97.0 0.0062 1.3E-07 59.6 11.5 51 286-336 108-166 (388)
388 PRK08244 hypothetical protein; 97.0 0.0057 1.2E-07 62.0 11.5 51 286-336 102-160 (493)
389 COG1053 SdhA Succinate dehydro 97.0 0.00052 1.1E-08 69.7 3.9 37 61-97 5-41 (562)
390 PRK05868 hypothetical protein; 97.0 0.0055 1.2E-07 59.6 11.0 40 297-336 117-161 (372)
391 KOG1276 Protoporphyrinogen oxi 97.0 0.00061 1.3E-08 64.6 4.0 39 61-99 10-50 (491)
392 PRK12843 putative FAD-binding 97.0 0.00085 1.8E-08 69.1 5.5 36 62-97 16-51 (578)
393 KOG2404 Fumarate reductase, fl 97.0 0.0022 4.8E-08 58.6 7.3 34 64-97 11-44 (477)
394 PRK06134 putative FAD-binding 97.0 0.00091 2E-08 68.9 5.3 37 61-97 11-47 (581)
395 PF01494 FAD_binding_3: FAD bi 97.0 0.0057 1.2E-07 58.7 10.4 52 285-336 112-173 (356)
396 PF00743 FMO-like: Flavin-bind 97.0 0.004 8.6E-08 63.1 9.4 130 231-375 2-195 (531)
397 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.0018 3.8E-08 63.3 6.4 31 232-276 2-32 (433)
398 PLN02976 amine oxidase 96.9 0.0012 2.7E-08 72.2 5.7 38 61-98 692-729 (1713)
399 PRK11728 hydroxyglutarate oxid 96.9 0.011 2.4E-07 57.9 12.0 52 293-345 158-214 (393)
400 PRK12771 putative glutamate sy 96.9 0.0025 5.5E-08 65.6 7.7 89 228-336 135-235 (564)
401 PF04820 Trp_halogenase: Trypt 96.9 0.0076 1.6E-07 60.1 10.8 46 290-335 160-211 (454)
402 TIGR01988 Ubi-OHases Ubiquinon 96.9 0.0098 2.1E-07 58.0 11.5 50 287-336 109-164 (385)
403 PRK10157 putative oxidoreducta 96.9 0.0094 2E-07 59.1 11.3 49 287-335 111-164 (428)
404 TIGR00136 gidA glucose-inhibit 96.9 0.0083 1.8E-07 61.0 10.9 47 289-335 101-154 (617)
405 COG2072 TrkA Predicted flavopr 96.9 0.02 4.2E-07 57.0 13.4 129 232-375 10-187 (443)
406 PRK08020 ubiF 2-octaprenyl-3-m 96.9 0.01 2.2E-07 58.1 11.3 51 286-336 114-170 (391)
407 PRK06753 hypothetical protein; 96.8 0.0081 1.8E-07 58.4 10.4 39 298-336 110-153 (373)
408 PRK07190 hypothetical protein; 96.8 0.01 2.2E-07 59.9 11.2 50 286-335 111-165 (487)
409 PRK07364 2-octaprenyl-6-methox 96.8 0.011 2.4E-07 58.4 11.3 49 288-336 125-182 (415)
410 PRK08013 oxidoreductase; Provi 96.8 0.014 3.1E-07 57.3 11.6 49 288-336 115-169 (400)
411 KOG2960 Protein involved in th 96.8 0.00065 1.4E-08 58.2 1.8 37 62-98 76-114 (328)
412 PF13454 NAD_binding_9: FAD-NA 96.8 0.013 2.9E-07 49.2 9.8 36 298-333 114-155 (156)
413 PRK06475 salicylate hydroxylas 96.7 0.017 3.6E-07 56.9 11.8 50 286-335 109-167 (400)
414 PRK08850 2-octaprenyl-6-methox 96.7 0.014 3.1E-07 57.4 11.3 38 298-335 126-168 (405)
415 PRK08849 2-octaprenyl-3-methyl 96.7 0.013 2.9E-07 57.2 11.0 39 298-336 125-168 (384)
416 PLN02785 Protein HOTHEAD 96.7 0.0027 5.9E-08 65.2 5.8 35 61-96 54-88 (587)
417 KOG1399 Flavin-containing mono 96.7 0.027 5.9E-07 55.6 12.5 90 231-334 7-152 (448)
418 TIGR01984 UbiH 2-polyprenyl-6- 96.7 0.025 5.4E-07 55.2 12.3 50 286-335 107-162 (382)
419 TIGR02028 ChlP geranylgeranyl 96.6 0.018 4E-07 56.5 11.1 36 364-404 270-306 (398)
420 COG1148 HdrA Heterodisulfide r 96.6 0.0076 1.7E-07 58.3 7.8 68 229-310 123-205 (622)
421 TIGR01377 soxA_mon sarcosine o 96.6 0.023 5E-07 55.3 11.6 31 232-276 2-32 (380)
422 PRK06185 hypothetical protein; 96.6 0.026 5.7E-07 55.5 12.0 51 286-336 110-170 (407)
423 PRK07494 2-octaprenyl-6-methox 96.6 0.024 5.2E-07 55.5 11.5 48 288-336 115-168 (388)
424 COG0493 GltD NADPH-dependent g 96.6 0.0036 7.7E-08 61.9 5.6 87 231-336 124-221 (457)
425 COG3573 Predicted oxidoreducta 96.5 0.0031 6.7E-08 58.0 4.6 35 61-95 4-38 (552)
426 COG1004 Ugd Predicted UDP-gluc 96.5 0.0083 1.8E-07 56.9 7.4 34 63-96 1-34 (414)
427 KOG0399 Glutamate synthase [Am 96.5 0.0082 1.8E-07 63.5 7.9 89 228-335 1783-1882(2142)
428 TIGR02023 BchP-ChlP geranylger 96.5 0.018 3.9E-07 56.4 10.2 38 364-405 264-301 (388)
429 PRK06617 2-octaprenyl-6-methox 96.5 0.025 5.4E-07 55.1 11.0 49 287-336 107-161 (374)
430 COG1251 NirB NAD(P)H-nitrite r 96.5 0.0036 7.9E-08 63.6 5.2 102 61-184 144-245 (793)
431 PRK06996 hypothetical protein; 96.5 0.032 6.9E-07 54.8 11.7 50 284-333 115-172 (398)
432 PLN00093 geranylgeranyl diphos 96.5 0.035 7.5E-07 55.4 11.8 38 363-405 308-346 (450)
433 TIGR01810 betA choline dehydro 96.5 0.0027 5.9E-08 64.9 4.1 33 64-96 1-34 (532)
434 PRK06183 mhpA 3-(3-hydroxyphen 96.4 0.026 5.7E-07 57.8 11.3 51 286-336 115-175 (538)
435 TIGR01372 soxA sarcosine oxida 96.4 0.013 2.9E-07 64.2 9.6 93 62-184 317-413 (985)
436 COG2303 BetA Choline dehydroge 96.4 0.0039 8.5E-08 63.6 4.8 36 60-95 5-40 (542)
437 TIGR03329 Phn_aa_oxid putative 96.4 0.036 7.8E-07 55.6 11.6 45 291-336 190-238 (460)
438 TIGR01989 COQ6 Ubiquinone bios 96.4 0.035 7.6E-07 55.3 11.5 50 287-336 120-184 (437)
439 KOG0405 Pyridine nucleotide-di 96.4 0.0064 1.4E-07 56.3 5.5 103 61-186 188-291 (478)
440 PRK10015 oxidoreductase; Provi 96.4 0.034 7.3E-07 55.2 11.1 49 286-334 110-163 (429)
441 PF13241 NAD_binding_7: Putati 96.3 0.0042 9.2E-08 48.2 3.7 34 61-94 6-39 (103)
442 PRK05732 2-octaprenyl-6-methox 96.3 0.041 8.8E-07 53.9 11.5 47 290-336 118-170 (395)
443 PRK08243 4-hydroxybenzoate 3-m 96.3 0.042 9E-07 53.9 11.5 49 288-336 107-164 (392)
444 PRK09897 hypothetical protein; 96.3 0.049 1.1E-06 55.2 11.8 33 232-276 3-35 (534)
445 PRK08132 FAD-dependent oxidore 96.3 0.04 8.6E-07 56.6 11.5 51 286-336 127-186 (547)
446 TIGR02485 CobZ_N-term precorri 96.2 0.0026 5.7E-08 63.2 2.4 30 67-96 1-30 (432)
447 KOG4716 Thioredoxin reductase 96.2 0.0031 6.6E-08 58.1 2.5 101 63-185 199-303 (503)
448 KOG3851 Sulfide:quinone oxidor 96.1 0.0031 6.7E-08 57.6 2.1 99 232-342 41-153 (446)
449 TIGR00275 flavoprotein, HI0933 96.1 0.037 8E-07 54.4 9.9 50 285-335 106-160 (400)
450 TIGR03219 salicylate_mono sali 96.1 0.039 8.5E-07 54.5 10.2 37 299-335 118-159 (414)
451 KOG1346 Programmed cell death 96.1 0.011 2.4E-07 56.0 5.5 101 61-185 346-452 (659)
452 KOG2853 Possible oxidoreductas 96.0 0.0099 2.2E-07 54.9 4.8 37 61-97 85-125 (509)
453 COG0644 FixC Dehydrogenases (f 96.0 0.069 1.5E-06 52.4 11.2 90 232-335 5-152 (396)
454 PF06039 Mqo: Malate:quinone o 96.0 0.046 1E-06 53.2 9.4 35 61-95 2-38 (488)
455 TIGR02360 pbenz_hydroxyl 4-hyd 96.0 0.071 1.5E-06 52.2 11.1 49 288-336 107-164 (390)
456 TIGR01470 cysG_Nterm siroheme 96.0 0.0094 2E-07 52.5 4.4 34 62-95 9-42 (205)
457 KOG4254 Phytoene desaturase [C 95.9 0.0066 1.4E-07 58.2 3.2 39 61-99 13-51 (561)
458 PF12831 FAD_oxidored: FAD dep 95.9 0.009 2E-07 59.2 4.3 98 233-346 2-159 (428)
459 COG1206 Gid NAD(FAD)-utilizing 95.8 0.007 1.5E-07 55.7 3.1 34 62-95 3-36 (439)
460 PRK06719 precorrin-2 dehydroge 95.8 0.013 2.8E-07 49.3 4.4 34 61-94 12-45 (157)
461 KOG2665 Predicted FAD-dependen 95.8 0.0075 1.6E-07 55.1 3.1 37 61-97 47-85 (453)
462 PF01210 NAD_Gly3P_dh_N: NAD-d 95.8 0.01 2.2E-07 50.0 3.8 32 64-95 1-32 (157)
463 PF01946 Thi4: Thi4 family; PD 95.8 0.15 3.2E-06 44.7 10.7 91 232-336 19-166 (230)
464 KOG2852 Possible oxidoreductas 95.7 0.075 1.6E-06 48.2 8.8 39 230-276 10-48 (380)
465 PRK11445 putative oxidoreducta 95.6 0.18 3.8E-06 48.7 12.2 38 364-405 264-301 (351)
466 KOG0042 Glycerol-3-phosphate d 95.6 0.0042 9.2E-08 60.7 0.9 38 60-97 65-102 (680)
467 PRK07538 hypothetical protein; 95.6 0.11 2.3E-06 51.4 10.8 22 232-253 2-23 (413)
468 PLN02985 squalene monooxygenas 95.6 0.14 3E-06 52.1 11.6 23 231-253 44-66 (514)
469 COG0445 GidA Flavin-dependent 95.5 0.025 5.5E-07 55.8 5.8 37 297-333 114-156 (621)
470 PRK02705 murD UDP-N-acetylmura 95.5 0.013 2.9E-07 58.7 4.1 34 64-97 2-35 (459)
471 PF03721 UDPG_MGDP_dh_N: UDP-g 95.5 0.013 2.9E-07 50.7 3.3 34 63-96 1-34 (185)
472 PRK06718 precorrin-2 dehydroge 95.4 0.021 4.5E-07 50.2 4.4 34 61-94 9-42 (202)
473 COG0569 TrkA K+ transport syst 95.4 0.015 3.3E-07 52.1 3.6 34 63-96 1-34 (225)
474 KOG2844 Dimethylglycine dehydr 95.4 0.051 1.1E-06 54.8 7.4 33 61-93 38-71 (856)
475 COG4529 Uncharacterized protei 95.3 0.16 3.5E-06 49.7 10.4 21 232-252 3-23 (474)
476 KOG2311 NAD/FAD-utilizing prot 95.3 0.053 1.1E-06 52.5 6.8 22 232-253 30-51 (679)
477 PF02558 ApbA: Ketopantoate re 95.3 0.059 1.3E-06 44.9 6.6 77 233-336 1-80 (151)
478 PRK14106 murD UDP-N-acetylmura 95.2 0.074 1.6E-06 53.2 8.4 76 231-336 6-81 (450)
479 TIGR01470 cysG_Nterm siroheme 95.2 0.035 7.6E-07 48.9 5.1 73 231-336 10-83 (205)
480 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.023 4.9E-07 49.0 3.9 33 64-96 1-33 (180)
481 COG3634 AhpF Alkyl hydroperoxi 95.2 0.068 1.5E-06 49.7 7.0 99 231-334 212-324 (520)
482 PRK08255 salicylyl-CoA 5-hydro 95.1 0.074 1.6E-06 56.8 8.5 34 232-277 2-35 (765)
483 PRK14106 murD UDP-N-acetylmura 95.1 0.026 5.6E-07 56.5 4.7 35 61-95 4-38 (450)
484 PF13450 NAD_binding_8: NAD(P) 95.1 0.04 8.6E-07 39.0 4.2 30 235-278 1-30 (68)
485 KOG3855 Monooxygenase involved 95.0 0.035 7.6E-07 52.8 4.8 34 61-94 35-72 (481)
486 COG3486 IucD Lysine/ornithine 94.9 0.12 2.5E-06 49.4 7.9 50 131-186 291-344 (436)
487 PRK06718 precorrin-2 dehydroge 94.8 0.057 1.2E-06 47.5 5.5 72 231-335 11-82 (202)
488 KOG2820 FAD-dependent oxidored 94.8 0.3 6.5E-06 45.5 10.0 53 288-340 157-217 (399)
489 KOG2614 Kynurenine 3-monooxyge 94.8 0.15 3.3E-06 48.7 8.4 30 232-275 4-33 (420)
490 PF01262 AlaDh_PNT_C: Alanine 94.6 0.04 8.8E-07 46.9 3.9 34 62-95 20-53 (168)
491 PRK06481 fumarate reductase fl 94.6 0.34 7.3E-06 49.2 11.1 51 286-336 192-253 (506)
492 PRK06854 adenylylsulfate reduc 94.6 0.046 1E-06 56.7 4.9 43 356-406 389-431 (608)
493 PRK04148 hypothetical protein; 94.5 0.034 7.3E-07 44.9 2.9 33 63-96 18-50 (134)
494 KOG1238 Glucose dehydrogenase/ 94.4 0.057 1.2E-06 54.6 5.0 37 61-97 56-93 (623)
495 PF01488 Shikimate_DH: Shikima 94.4 0.053 1.1E-06 44.3 4.0 33 62-94 12-45 (135)
496 PRK05335 tRNA (uracil-5-)-meth 94.4 0.045 9.7E-07 53.4 4.0 42 355-406 322-363 (436)
497 PRK08275 putative oxidoreducta 94.2 0.056 1.2E-06 55.5 4.7 35 62-96 9-45 (554)
498 PRK07819 3-hydroxybutyryl-CoA 94.2 0.055 1.2E-06 50.4 4.2 34 63-96 6-39 (286)
499 PRK05562 precorrin-2 dehydroge 94.1 0.11 2.3E-06 46.1 5.6 71 229-332 24-94 (223)
500 COG2509 Uncharacterized FAD-de 94.0 0.049 1.1E-06 52.6 3.4 45 351-405 438-482 (486)
No 1
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=7.8e-53 Score=397.18 Aligned_cols=326 Identities=34% Similarity=0.535 Sum_probs=285.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
.+++|||||||++|+.+|..|.+.. .+|+|||+.+++.|.|+++....|..+......++.... ....++.|+++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~---~~~~~v~~~~~ 78 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALL---RKSGNVQFVQG 78 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHh---cccCceEEEEE
Confidence 3578999999999999999999864 889999999999999999999999999888877777653 22346999999
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
+|++||++++.|.+. ++. .+.||+||||+|+.+..+.+||..++.+.+++++++.++++++...+....
T Consensus 79 ~V~~ID~~~k~V~~~---~~~--------~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~ 147 (405)
T COG1252 79 EVTDIDRDAKKVTLA---DLG--------EISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS 147 (405)
T ss_pred EEEEEcccCCEEEeC---CCc--------cccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999886 333 799999999999999999999999999999999999999999976666555
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhc
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (436)
.+.-+ +...+++|+|||++|+|+|.+|+++..+...+ +...+.+.+|+|+++. .++|.+++++++.+++.|++.
T Consensus 148 ~~~~~----~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~ 222 (405)
T COG1252 148 QEEDD----RALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKL 222 (405)
T ss_pred ccccc----cceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHC
Confidence 33200 13347999999999999999999988655555 4433346899999995 689999999999999999999
Q ss_pred CCEEEecc-eEEEeCCeEEEcCCcE-EecceEEEecCCCCchhccc-CCCCCCCCCcEEeCCCCCCCCCCCEEEeccccc
Q 013810 298 GVRLVRGI-VKDVDSQKLILNDGTE-VPYGLLVWSTGVGPSTLVKS-LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~ 374 (436)
||++++++ |++++++.|++++|.+ |++|++||++|.+++++.++ .+++.|..|++.||+++|++++|+|||+|||+.
T Consensus 223 GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~ 302 (405)
T COG1252 223 GVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAA 302 (405)
T ss_pred CCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEecccc
Confidence 99999996 9999999999999985 99999999999999999998 488889999999999999999999999999999
Q ss_pred cccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 375 YLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 375 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
.+++ .+.|+.++.|.+||+.+|+||.....+
T Consensus 303 ~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 303 VIDP---RPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCC---CCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 8654 456999999999999999999865544
No 2
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=3.5e-48 Score=381.16 Aligned_cols=331 Identities=44% Similarity=0.750 Sum_probs=276.4
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
+.+++|||||||+||+.+|..|.+.+++|+|||+++++.|.|.++....|.........++... ....++.++.++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~~~~~~~i~~~ 83 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPA----LAKLPNRYLRAV 83 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHH----hccCCeEEEEEE
Confidence 3467999999999999999999887899999999999999999988888776665554444333 334578999999
Q ss_pred eEeEeCCCCEEEEEEe-------cCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHH
Q 013810 140 CAGIDTDNHVVHCETV-------TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLL 212 (436)
Q Consensus 140 v~~id~~~~~v~~~~~-------~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (436)
|++||++++.+.+... .++. +++||+||||||+.+..+++||.+++++..++++++.++++.+..
T Consensus 84 V~~Id~~~~~v~~~~~~~~~~~~~~g~--------~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~ 155 (424)
T PTZ00318 84 VYDVDFEEKRVKCGVVSKSNNANVNTF--------SVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQ 155 (424)
T ss_pred EEEEEcCCCEEEEecccccccccCCce--------EecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999887321 1233 799999999999999999999998888899999999999888765
Q ss_pred hccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHH
Q 013810 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYAT 291 (436)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~ 291 (436)
++.....|..+.+.+++.++++|||+|++|+|+|.+|+++......+.++...++.+|+|+++. .+++.+++++.+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~ 235 (424)
T PTZ00318 156 CIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQ 235 (424)
T ss_pred HHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHH
Confidence 5443333332233333445899999999999999999987755555555555667999999985 678889999999999
Q ss_pred HHHHhcCCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEec
Q 013810 292 TQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (436)
Q Consensus 292 ~~l~~~gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~G 370 (436)
+.|++.||+++.++ |.+++++.|++++|+++++|++|+++|.+|+++++.++++.+++|+|.||+++|++++|||||+|
T Consensus 236 ~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiG 315 (424)
T PTZ00318 236 RRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALG 315 (424)
T ss_pred HHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEe
Confidence 99999999999885 99999999999999999999999999999998888899998889999999999988999999999
Q ss_pred cccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 371 DCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 371 D~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
||+..+. .+.++++..|++||..+|+||....
T Consensus 316 D~a~~~~----~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 316 DCAANEE----RPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred ccccCCC----CCCCCchHHHHHHHHHHHHHHHHHh
Confidence 9998632 1247889999999999999998654
No 3
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=5.1e-49 Score=360.23 Aligned_cols=335 Identities=50% Similarity=0.819 Sum_probs=303.1
Q ss_pred CCCCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 58 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
....+++|||+|.|.+|.+.+..|....++|+||+|.+++.|+|+++..+.|..+.+++.+++..+... ...++.+++
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~--k~~~~~y~e 128 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARK--KNGEVKYLE 128 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhc--cCCCceEEe
Confidence 345678999999999999999999999999999999999999999999999999999999998887542 223788999
Q ss_pred eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhcccc
Q 013810 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (436)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (436)
.+.+.+|++.+.+.++....+.. .+++.+.|||||+|+|+.++.+.|||..++.+.++..+++.+++.++..+++..
T Consensus 129 Aec~~iDp~~k~V~~~s~t~~~~---~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a 205 (491)
T KOG2495|consen 129 AECTKIDPDNKKVHCRSLTADSS---DKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKA 205 (491)
T ss_pred cccEeecccccEEEEeeeccCCC---cceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999987655431 446689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHh
Q 013810 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSK 296 (436)
Q Consensus 218 ~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~ 296 (436)
..|++.++.+++..++||||||++|+|+|.+|+.+..+++++.|++.+...+|||++.. .+|+.|+..+.++.++.+.+
T Consensus 206 ~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 206 ELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVR 285 (491)
T ss_pred hcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999995 58999999999999999999
Q ss_pred cCCEEEecc-eEEEeCCeEEEcCC----cEEecceEEEecCCCCchhcccCCCCCCCCC--cEEeCCCCCCCCCCCEEEe
Q 013810 297 SGVRLVRGI-VKDVDSQKLILNDG----TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG--RIGIDEWLRVPSVQDVFAV 369 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~~~v~~~~g----~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G--~i~vd~~~~~t~~~~Vya~ 369 (436)
.+|++..++ |+.+++..+..+.+ +++++.+++|++|..|.++.+.+....++.| .+.||++||+.+.+||||+
T Consensus 286 ~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAi 365 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAI 365 (491)
T ss_pred ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEe
Confidence 999999995 99999988877654 5799999999999999988777766667777 7999999999999999999
Q ss_pred ccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 370 GDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 370 GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
|||+..+. .+++++.|.+||.++|+++.
T Consensus 366 GDca~~~~------~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 366 GDCADQRG------LKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred cccccccc------CccHHHHHHHHHHHHHHHHH
Confidence 99994322 35699999999999999885
No 4
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=2.5e-43 Score=348.16 Aligned_cols=323 Identities=18% Similarity=0.243 Sum_probs=252.8
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecc-hhhhhhcCcccccccccchhhcchhhhcCCCcEEEE-e
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (436)
++|||||||+||++||..|++. +++|+|||+++++.|.+ .++....+.....+. .+......+....++.++. +
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~--~~~~~~~~~~~~~~i~v~~~~ 79 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKY--ALAYTPEKFYDRKQITVKTYH 79 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHH--cccCCHHHHHHhCCCEEEeCC
Confidence 5899999999999999999875 67899999999888874 344333332221110 0111112233456788765 6
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
+|++||++++.|.+.+..+++ ..++.||+||||||++|+.|++++ +++++.+++.++..+.+.+..
T Consensus 80 ~V~~Id~~~~~v~~~~~~~~~------~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~------ 145 (438)
T PRK13512 80 EVIAINDERQTVTVLNRKTNE------QFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA------ 145 (438)
T ss_pred EEEEEECCCCEEEEEECCCCc------EEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh------
Confidence 999999999999887532222 125789999999999998877654 567778888888887766521
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhc
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (436)
..+++++|||+|++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|++.
T Consensus 146 ---------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~ 202 (438)
T PRK13512 146 ---------NQVDKALVVGAGYISLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKR 202 (438)
T ss_pred ---------cCCCEEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecccccchhcCHHHHHHHHHHHHhc
Confidence 12348999999999999999998766 899999985 567888999999999999999
Q ss_pred CCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccc
Q 013810 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~ 375 (436)
||+++.+. +++++...+++++|+++++|.|++|+|++|+ ++++..+++++++|+|.||+++| |++|||||+|||+..
T Consensus 203 gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~-t~~~~IyA~GD~~~~ 281 (438)
T PRK13512 203 EIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFE-TNVPNIYAIGDIITS 281 (438)
T ss_pred CCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcc-cCCCCEEEeeeeEEe
Confidence 99999985 9999888888888989999999999999999 68888899988889999999999 899999999999975
Q ss_pred cc-CCCCccCCccHHHHHHHHHHHHhhhhhhc---------CCceeeecchhHHHHHHHh
Q 013810 376 LE-STGKTVLPALAQVSYEQLHLFQKPSFLLA---------RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 376 ~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~---------~~~~~~~~~~~~~~~~~~~ 425 (436)
+. ..+.+..+++++.|.+||+.+|+||.... .+++.++++.+.++|++..
T Consensus 282 ~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~ 341 (438)
T PRK13512 282 HYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPN 341 (438)
T ss_pred eeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHH
Confidence 33 23444446788899999999999997532 2245578888888886554
No 5
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.6e-42 Score=335.91 Aligned_cols=306 Identities=23% Similarity=0.369 Sum_probs=248.0
Q ss_pred cEEEECCchHHHHHHHhccc---CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEe
Q 013810 64 RVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
+|||||||+||+.+|..|++ .+++|+|||+++++.|.+.++....|.....++..++.+ +....++.++.++|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~gv~~~~~~v 76 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRR----LARQAGARFVIAEA 76 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHH----HHHhcCCEEEEEEE
Confidence 59999999999999999964 468999999999999988777666665444444333332 24456899999999
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (436)
+.+|++++.|.+. +|+ ++.||+||||||+.+..|++||..++++.+++.+++....+.+..++...
T Consensus 77 ~~id~~~~~V~~~---~g~--------~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (364)
T TIGR03169 77 TGIDPDRRKVLLA---NRP--------PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP--- 142 (364)
T ss_pred EEEecccCEEEEC---CCC--------cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcC---
Confidence 9999998888764 565 79999999999999999999997788888888888887666553322111
Q ss_pred CCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCE
Q 013810 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300 (436)
Q Consensus 221 ~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~ 300 (436)
...++|+|||+|++|+|+|..|+++... .....+|+++..+.+++.+++++.+.+.+.|++.||+
T Consensus 143 -------~~~~~vvVvG~G~~g~E~A~~l~~~~~~--------~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~ 207 (364)
T TIGR03169 143 -------PGTKRLAVVGGGAAGVEIALALRRRLPK--------RGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIE 207 (364)
T ss_pred -------CCCceEEEECCCHHHHHHHHHHHHHHHh--------cCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 1234899999999999999999865410 0112589999556677788889999999999999999
Q ss_pred EEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCC
Q 013810 301 LVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379 (436)
Q Consensus 301 i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~ 379 (436)
++.+. +.+++.+.+.+.+|+++++|.+++|+|.+|++++...+++.+++|++.||+++|.+++|||||+|||+..+..
T Consensus 208 v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~- 286 (364)
T TIGR03169 208 VHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDA- 286 (364)
T ss_pred EEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCC-
Confidence 99984 9999888899999999999999999999999877778888888999999999995599999999999976421
Q ss_pred CCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 380 GKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 380 ~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.++.+..|++||+.+|+||....
T Consensus 287 ---~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 287 ---PRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred ---CCCCchHHHHHhHHHHHHHHHHHh
Confidence 236778899999999999997654
No 6
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=9.5e-42 Score=333.26 Aligned_cols=301 Identities=19% Similarity=0.285 Sum_probs=236.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCcceec-chhhh-hhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLAS-TCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
.++|||||||+||++||..|++.++ +|+||++++++.|. |.+.. ...+... .. .......+....++.++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~-~~----~~~~~~~~~~~~~i~~~~ 77 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSP-QL----QQVLPANWWQENNVHLHS 77 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCc-cc----cccCCHHHHHHCCCEEEc
Confidence 4689999999999999999999876 69999999887774 43432 2222211 11 001112233456888887
Q ss_pred e-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhcc
Q 013810 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
+ .|+.+|.+.+.+.+. +|. .+.||+||||||++|+.+++++.. ++++++++..++..+.+.+
T Consensus 78 g~~V~~id~~~~~v~~~---~g~--------~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~----- 141 (396)
T PRK09754 78 GVTIKTLGRDTRELVLT---NGE--------SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVL----- 141 (396)
T ss_pred CCEEEEEECCCCEEEEC---CCC--------EEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHh-----
Confidence 6 789999988887664 565 799999999999999888776653 6678888888988887765
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC-cccHHHHHHHHHH
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQ 293 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~ 293 (436)
..+++++|||+|++|+|+|..|.+.+ .+|+++++. .+++ .+++...+.+.+.
T Consensus 142 ------------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~ 195 (396)
T PRK09754 142 ------------QPERSVVIVGAGTIGLELAASATQRR--------------CKVTVIELAATVMGRNAPPPVQRYLLQR 195 (396)
T ss_pred ------------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCcchhhhcCHHHHHHHHHH
Confidence 23358999999999999999998766 899999985 4554 4678888889999
Q ss_pred HHhcCCEEEecc-eEEEeCC---eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 294 LSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 294 l~~~gV~i~~~~-v~~i~~~---~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
+++.||+++.+. +++++.+ .+.+.+|+++++|.|++++|.+|+ .+++..+++.+ +.|.||+++| |+.|||||
T Consensus 196 l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~--~gi~vd~~~~-ts~~~IyA 272 (396)
T PRK09754 196 HQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTA--NGIVIDEACR-TCDPAIFA 272 (396)
T ss_pred HHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcC--CCEEECCCCc-cCCCCEEE
Confidence 999999999984 8888643 356788999999999999999999 47777888754 4599999999 89999999
Q ss_pred eccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-----CCceee
Q 013810 369 VGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-----RNWCWF 412 (436)
Q Consensus 369 ~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-----~~~~~~ 412 (436)
+|||+..+..+|......++..|..||+.||+||.... .+++|.
T Consensus 273 ~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~ 321 (396)
T PRK09754 273 GGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWS 321 (396)
T ss_pred ccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEE
Confidence 99999865545555556789999999999999997543 356665
No 7
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.3e-40 Score=330.91 Aligned_cols=321 Identities=20% Similarity=0.278 Sum_probs=245.7
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcceecch-hhhhhcCcccccccccchhhcchhhhcCCCcEEEE-e
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (436)
++|||||||+||++||..|++.+ .+|+|||+++++.|.+. ++....+.... ...+...........++.++. .
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~gv~~~~~~ 77 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDD---PNTMIARTPEEFIKSGIDVKTEH 77 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCC---HHHhhcCCHHHHHHCCCeEEecC
Confidence 37999999999999999999864 58999999999877642 22222221111 001111111223345788764 5
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeee--ccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhcc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKIS--YDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~--~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
+|+.+|.+.+.+.+....++. .+. ||+||||||++|..|++||.+ +++++.+++.++.++.+.+..
T Consensus 78 ~V~~id~~~~~v~~~~~~~~~--------~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~--- 146 (444)
T PRK09564 78 EVVKVDAKNKTITVKNLKTGS--------IFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD--- 146 (444)
T ss_pred EEEEEECCCCEEEEEECCCCC--------EEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---
Confidence 899999999988886433343 455 999999999999999999986 677888888888877776521
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC-cccHHHHHHHHHH
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQ 293 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~ 293 (436)
..+++|+|||+|++|+|+|..+.+.+ .+|+++++. .+++ .+++++.+.+.+.
T Consensus 147 ------------~~~~~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~l~~~ 200 (444)
T PRK09564 147 ------------EEIKNIVIIGAGFIGLEAVEAAKHLG--------------KNVRIIQLEDRILPDSFDKEITDVMEEE 200 (444)
T ss_pred ------------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEeCCcccCchhcCHHHHHHHHHH
Confidence 22358999999999999999998765 899999985 4555 5789999999999
Q ss_pred HHhcCCEEEecc-eEEEeCCe---EEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 294 LSKSGVRLVRGI-VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 294 l~~~gV~i~~~~-v~~i~~~~---v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
+++.||+++.++ +.+++.+. ....++.++++|.+++|+|+.|+ ++++..+++++++|+|.||+++| |+.|||||
T Consensus 201 l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~-t~~~~IyA 279 (444)
T PRK09564 201 LRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGE-TSIENIYA 279 (444)
T ss_pred HHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcc-cCCCCEEE
Confidence 999999999985 88886432 12235557999999999999999 68899999888889999999999 89999999
Q ss_pred ecccccccc-CCCCccCCccHHHHHHHHHHHHhhhhhhcCC--------ceeeecchhHHHHHHH
Q 013810 369 VGDCSGYLE-STGKTVLPALAQVSYEQLHLFQKPSFLLARN--------WCWFFDVCSLTSILNR 424 (436)
Q Consensus 369 ~GD~~~~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--------~~~~~~~~~~~~~~~~ 424 (436)
+|||+..+. ..+++.++++++.|.+||+.+|+||...... ...+++..+.++|++.
T Consensus 280 ~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~ 344 (444)
T PRK09564 280 AGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTE 344 (444)
T ss_pred eeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCH
Confidence 999998755 3455556789999999999999999854321 2336777777777554
No 8
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2e-40 Score=346.18 Aligned_cols=292 Identities=21% Similarity=0.375 Sum_probs=237.3
Q ss_pred CCcEEEECCchHHHHHHHhccc----CCCeEEEEcCCCcceecch-hhhhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
+++|||||+|+||+.+|..|++ .+++|+||++++++.|.+. ++....+ ....++ ......+....++.++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l----~~~~~~~~~~~gI~~~ 77 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEEL----SLVREGFYEKHGIKVL 77 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHc----cCCCHHHHHhCCCEEE
Confidence 3589999999999999999975 3579999999999887653 3333322 222222 2222233455789998
Q ss_pred Ee-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhc
Q 013810 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 137 ~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
.+ .|+.+|++.+.|.+. +|. ++.||+||||||+.|+.|++||.+ .+++.+++++++..+...+
T Consensus 78 ~g~~V~~Id~~~~~V~~~---~G~--------~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~---- 142 (847)
T PRK14989 78 VGERAITINRQEKVIHSS---AGR--------TVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA---- 142 (847)
T ss_pred cCCEEEEEeCCCcEEEEC---CCc--------EEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH----
Confidence 86 699999988777653 565 799999999999999999999986 4577788999988887654
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-cccHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATT 292 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~-~~~~~~~~~~~~ 292 (436)
..+++++|||+|++|+|+|..|.+++ .+|+++++.+ +++ .++++..+.+.+
T Consensus 143 -------------~~~k~vvVIGgG~iGlE~A~~L~~~G--------------~~VtvVe~~~~ll~~~ld~~~~~~l~~ 195 (847)
T PRK14989 143 -------------RRSKRGAVVGGGLLGLEAAGALKNLG--------------VETHVIEFAPMLMAEQLDQMGGEQLRR 195 (847)
T ss_pred -------------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeccccchhhhcCHHHHHHHHH
Confidence 23458999999999999999999876 8999999964 554 589999999999
Q ss_pred HHHhcCCEEEecc-eEEEeCC------eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCC
Q 013810 293 QLSKSGVRLVRGI-VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~~------~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~ 364 (436)
.|++.||+++.+. ++++..+ .+.++||+++++|+||+++|++|+ .+++..|++++++|+|.||+++| |+.|
T Consensus 196 ~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~-Ts~p 274 (847)
T PRK14989 196 KIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQ-TSDP 274 (847)
T ss_pred HHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCc-CCCC
Confidence 9999999999995 8888532 467889999999999999999999 57888999999999999999999 8999
Q ss_pred CEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 365 DVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 365 ~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+|||+|||+..... ...++..|..||+.||.||....
T Consensus 275 ~IYAiGD~a~~~~~-----~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 275 DIYAIGECASWNNR-----VFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred CEEEeecceeEcCc-----ccccHHHHHHHHHHHHHHhcCCC
Confidence 99999999986321 13478899999999999998643
No 9
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.3e-40 Score=320.74 Aligned_cols=307 Identities=23% Similarity=0.289 Sum_probs=232.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh---------------------cCc------ccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC---------------------VGT------LEF 113 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~---------------------~~~------~~~ 113 (436)
.++|+|||||||||..||.++++.|.+|.|||++..++......+.. .|. .++
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 46999999999999999999999999999999985433221100000 000 011
Q ss_pred ccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 114 RSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 114 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..+.. .+......+.+..+++++.+...-++ .+++.+... +.+ ++.+|++|||||++|+.|+
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~-~~~--------~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGE-DKE--------TITADNIIIATGSRPRIPP 151 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCC-Cce--------EEEeCEEEEcCCCCCcCCC
Confidence 11111 11111122344567888888776665 567766532 122 8999999999999999999
Q ss_pred CCCCccc-cccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 187 IHGVKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 187 i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
++|+++. ++...+. +.+..+|. +++|||||++|+|+|..++++|
T Consensus 152 ~~~~~~~~~~~s~~~-------------l~~~~lP~----------~lvIiGgG~IGlE~a~~~~~LG------------ 196 (454)
T COG1249 152 GPGIDGARILDSSDA-------------LFLLELPK----------SLVIVGGGYIGLEFASVFAALG------------ 196 (454)
T ss_pred CCCCCCCeEEechhh-------------cccccCCC----------EEEEECCCHHHHHHHHHHHHcC------------
Confidence 9998643 3333332 12235665 9999999999999999999998
Q ss_pred CccEEEEEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCc--EEecceEEEecCCCCc-
Q 013810 266 DYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGT--EVPYGLLVWSTGVGPS- 336 (436)
Q Consensus 266 ~~~~V~lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~--~i~~D~vi~a~G~~p~- 336 (436)
.+||++++ +.+++.+|+++++.+.+.|++.|+++++++ +++++.+ .+.+++|+ ++++|.+++|+|++||
T Consensus 197 --~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 197 --SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred --CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 99999999 578999999999999999999899999995 7777543 36667776 7999999999999999
Q ss_pred h-h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh-h-------c
Q 013810 337 T-L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL-L-------A 406 (436)
Q Consensus 337 ~-~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~-~-------~ 406 (436)
+ + +++.|+++|++|+|.||..++ |++|||||+|||++. +.+++.|..||++||+||+. . .
T Consensus 275 ~~LgLe~~Gv~~~~rg~I~VD~~~~-Tnvp~IyA~GDV~~~---------~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~ 344 (454)
T COG1249 275 DGLGLENAGVELDDRGFIKVDDQMT-TNVPGIYAIGDVIGG---------PMLAHVAMAEGRIAAENIAGGKRTPIDYRL 344 (454)
T ss_pred CCCChhhcCceECCCCCEEeCCccc-cCCCCEEEeeccCCC---------cccHhHHHHHHHHHHHHHhCCCCCcCcccC
Confidence 3 3 788899999999999996666 889999999999887 66999999999999999985 1 2
Q ss_pred CCceeeecchhHHHHHHHh
Q 013810 407 RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~ 425 (436)
.|++-+-+..+.+++++..
T Consensus 345 iP~~ift~Peia~VGlte~ 363 (454)
T COG1249 345 IPSVVFTDPEIASVGLTEE 363 (454)
T ss_pred CCEEEECCCcceeeeCCHH
Confidence 3567777777777776543
No 10
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=4.8e-39 Score=312.56 Aligned_cols=290 Identities=22% Similarity=0.333 Sum_probs=227.4
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCccee-cchhhhhhcCcccccccccchhhcchhhhcCCCcEEEE-e
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVF-TPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (436)
++|||||||+||+++|..|++. ..+|+||++++...| .|.+.....+.....++.. .....+.+..++.++. .
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~gv~~~~~~ 79 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTR---QSAGEFAEQFNLRLFPHT 79 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhc---CCHHHHHHhCCCEEECCC
Confidence 5899999999999999999874 457999999987666 4555544444322222211 1112334556888875 5
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
+|+++|.+.+.+.+ ++. .+.||+||||||+.|..|++||.+. ++..+++.++..+.+.+
T Consensus 80 ~V~~id~~~~~v~~----~~~--------~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~-------- 138 (377)
T PRK04965 80 WVTDIDAEAQVVKS----QGN--------QWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL-------- 138 (377)
T ss_pred EEEEEECCCCEEEE----CCe--------EEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh--------
Confidence 89999998877764 444 7999999999999999999999754 77778888877766654
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCc-ccHHHHHHHHHHHHh
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSK 296 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~-~~~~~~~~~~~~l~~ 296 (436)
...++|+|||+|++|+|+|..|.+.+ .+|+++++. .+++. +++.+.+.+.+.+++
T Consensus 139 ---------~~~~~vvViGgG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~ 195 (377)
T PRK04965 139 ---------RDAQRVLVVGGGLIGTELAMDLCRAG--------------KAVTLVDNAASLLASLMPPEVSSRLQHRLTE 195 (377)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCcccchhCCHHHHHHHHHHHHh
Confidence 23358999999999999999998765 899999985 45544 578888899999999
Q ss_pred cCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEec
Q 013810 297 SGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~G 370 (436)
.||+++.+. +.+++.+ .+.+.+|+++++|.||+|+|.+|+ .+++.++++.+ +| |.||+++| |+.|||||+|
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~l~-ts~~~VyA~G 272 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVN-RG-IVVDSYLQ-TSAPDIYALG 272 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcC-CC-EEECCCcc-cCCCCEEEee
Confidence 999999884 8888653 367789999999999999999999 57788888875 45 99999999 8999999999
Q ss_pred cccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 371 DCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 371 D~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
||+..+. . ....+..|..||+.+|+||.....
T Consensus 273 D~a~~~~---~--~~~~~~~a~~~g~~~a~n~~g~~~ 304 (377)
T PRK04965 273 DCAEING---Q--VLPFLQPIQLSAMALAKNLLGQNT 304 (377)
T ss_pred ecEeECC---c--eeehHHHHHHHHHHHHHHhcCCCc
Confidence 9998632 1 123567799999999999986543
No 11
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=3.2e-39 Score=319.58 Aligned_cols=301 Identities=20% Similarity=0.235 Sum_probs=221.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh--------------------cCc-------cccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC--------------------VGT-------LEFR 114 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~--------------------~~~-------~~~~ 114 (436)
++||+||||||||++||..|++.|.+|+|||+.. ++......+.. .|. .++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 4899999999999999999999999999999853 32211000000 000 0000
Q ss_pred cccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC-C
Q 013810 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF-G 186 (436)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~-~ 186 (436)
.+.. .+...........++.++.++....+ .+.+.+ ++. .+.||+||||||++|+.| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v----~~~--------~~~~d~vIiAtGs~p~~p~~ 146 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK--DGTVEV----NGR--------DYTAPHILIATGGKPSFPEN 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEE----CCE--------EEEeCEEEEecCCCCCCCCC
Confidence 0000 01111112233457888888665433 445544 344 789999999999999998 8
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013810 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (436)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~ 266 (436)
+||.+ ...+ .++... +...| ++++|||+|++|+|+|..|+.++
T Consensus 147 i~g~~-~~~~---~~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g------------- 189 (450)
T TIGR01421 147 IPGAE-LGTD---SDGFFA----------LEELP----------KRVVIVGAGYIAVELAGVLHGLG------------- 189 (450)
T ss_pred CCCCc-eeEc---HHHhhC----------ccccC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 99863 1111 111111 11223 39999999999999999999876
Q ss_pred ccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC-----eEEEcCC-cEEecceEEEecCCCCch-
Q 013810 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDG-TEVPYGLLVWSTGVGPST- 337 (436)
Q Consensus 267 ~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~-----~v~~~~g-~~i~~D~vi~a~G~~p~~- 337 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +++++.+ .+++++| +++++|.|++++|++|+.
T Consensus 190 -~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 190 -SETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -CcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 899999985 57888999999999999999999999994 8888632 3566677 579999999999999993
Q ss_pred h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh---------c
Q 013810 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL---------A 406 (436)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~---------~ 406 (436)
+ ++..+++++++|+|.||+++| |++|||||+|||++. +..++.|.+||+.||+||... .
T Consensus 269 ~l~l~~~g~~~~~~G~i~vd~~~~-T~~p~IyAiGD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 338 (450)
T TIGR01421 269 GLGLENVGIKLNEKGQIIVDEYQN-TNVPGIYALGDVVGK---------VELTPVAIAAGRKLSERLFNGKTDDKLDYNN 338 (450)
T ss_pred cCCccccCcEECCCCcEEeCCCCc-CCCCCEEEEEecCCC---------cccHHHHHHHHHHHHHHHhcCCCCCccCccc
Confidence 3 577889999999999999999 899999999999986 678899999999999999732 2
Q ss_pred CCceeeecchhHHHHHHHh
Q 013810 407 RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~ 425 (436)
.+++.+.+..+..++++..
T Consensus 339 ~p~~~f~~p~ia~vGlte~ 357 (450)
T TIGR01421 339 VPTVVFSHPPIGTIGLTEK 357 (450)
T ss_pred CCeEEeCCCceEEEeCCHH
Confidence 4566667777777776654
No 12
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2.2e-38 Score=331.56 Aligned_cols=288 Identities=21% Similarity=0.375 Sum_probs=233.5
Q ss_pred EEEECCchHHHHHHHhccc---CCCeEEEEcCCCcceecc-hhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 65 VVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 65 VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
|||||||+||++||..|++ .+++|+|||+++++.|.+ .++....|.....++..... .+....++.++.+ +
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~----~~~~~~gv~~~~g~~ 76 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK----DWYEKHGITLYTGET 76 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCH----HHHHHCCCEEEcCCe
Confidence 6999999999999999876 357899999999987763 45555555444433322222 2344568999876 8
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccC
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
|+.||++.+.+.+. +|. ++.||+||||||+.|+.|++||.+ .+++.+++++++..+.+.+
T Consensus 77 V~~Id~~~k~V~~~---~g~--------~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~-------- 137 (785)
T TIGR02374 77 VIQIDTDQKQVITD---AGR--------TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA-------- 137 (785)
T ss_pred EEEEECCCCEEEEC---CCc--------EeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh--------
Confidence 99999998887764 565 799999999999999999999986 5678888898888877654
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-cccHHHHHHHHHHHHh
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSK 296 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~-~~~~~~~~~~~~~l~~ 296 (436)
...++++|||+|++|+|+|..|.+.+ .+|+++++.+ +++ .+++...+.+.+.+++
T Consensus 138 ---------~~~k~vvVVGgG~~GlE~A~~L~~~G--------------~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~ 194 (785)
T TIGR02374 138 ---------QRFKKAAVIGGGLLGLEAAVGLQNLG--------------MDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ 194 (785)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEccCCchhhhhcCHHHHHHHHHHHHH
Confidence 23458999999999999999999876 8999999854 443 5788889999999999
Q ss_pred cCCEEEecc-eEEEeC----CeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEec
Q 013810 297 SGVRLVRGI-VKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~----~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~G 370 (436)
.||+++.++ ++++.. ..|.++||+++++|+||+++|++|+ .+++.++++.+ |.|.||+++| |+.|||||+|
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~~~~-Ts~p~IyA~G 271 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVNDSMQ-TSDPDIYAVG 271 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECCCcc-cCCCCEEEee
Confidence 999999995 888864 2477899999999999999999999 57778888776 5699999999 8999999999
Q ss_pred cccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 371 DCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 371 D~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
||+..+.. ...++..|..||+.+|.||....
T Consensus 272 D~a~~~~~-----~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 272 ECAEHNGR-----VYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred ecceeCCc-----ccccHHHHHHHHHHHHHHhcCCC
Confidence 99986321 13467789999999999998654
No 13
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=9.9e-39 Score=316.57 Aligned_cols=307 Identities=18% Similarity=0.258 Sum_probs=224.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc-ceecchhhhhhc---------Ccccccccc-------cchh-hc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH-MVFTPLLASTCV---------GTLEFRSVA-------EPIA-RI 123 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~-~~~~~~~~~~~~---------~~~~~~~~~-------~~~~-~~ 123 (436)
++||+||||||||++||.+|++.|.+|+|||+++. ++......+... ...++.... ..+. ..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 58999999999999999999999999999998754 222211000000 000110000 0010 01
Q ss_pred chhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc--cccccccChH
Q 013810 124 QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK--ENATFLREVH 201 (436)
Q Consensus 124 ~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~--~~~~~~~~~~ 201 (436)
...+.+..++.++.+++..++.. .+.+.. .++. .++.||+||||||++|..|++||.+ .+++.. .
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~--~~~v~~-~~g~-------~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~---~ 149 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNH--SLRVHR-PEGN-------LEIHGEKIFINTGAQTVVPPIPGITTTPGVYDS---T 149 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCC--EEEEEe-CCCe-------EEEEeCEEEEcCCCcCCCCCCCCccCCCCEECh---h
Confidence 11233445899999988888764 444432 1332 1589999999999999999999974 233322 1
Q ss_pred HHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC
Q 013810 202 HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS 280 (436)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~ 280 (436)
+... +...| ++++|||+|++|+|+|..|.+++ .+|+++++. .+++
T Consensus 150 ~~~~----------~~~~~----------~~v~ViGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~ 195 (441)
T PRK08010 150 GLLN----------LKELP----------GHLGILGGGYIGVEFASMFANFG--------------SKVTILEAASLFLP 195 (441)
T ss_pred Hhhc----------ccccC----------CeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCC
Confidence 1111 11122 38999999999999999999876 899999995 5778
Q ss_pred cccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeEEEc-CCcEEecceEEEecCCCCch-h--cccCCCCCCCCCcEE
Q 013810 281 SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIG 353 (436)
Q Consensus 281 ~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v~~~-~g~~i~~D~vi~a~G~~p~~-~--~~~~~l~~~~~G~i~ 353 (436)
.+++++.+.+.+.|++.||+++.+. +.+++. +.+.+. ++.++++|.|++|+|.+|+. + ++..+++++++|+|.
T Consensus 196 ~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~ 275 (441)
T PRK08010 196 REDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIV 275 (441)
T ss_pred CcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEE
Confidence 8889999999999999999999984 888864 334332 23358999999999999994 3 467788888899999
Q ss_pred eCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh---------cCCceeeecchhHHHHHHH
Q 013810 354 IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL---------ARNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 354 vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~---------~~~~~~~~~~~~~~~~~~~ 424 (436)
||+++| |++|||||+|||++. +++.+.|..||+.++.||+.. ..+++.++++.+..+|++.
T Consensus 276 vd~~~~-Ts~~~IyA~GD~~~~---------~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte 345 (441)
T PRK08010 276 VDKYLH-TTADNIWAMGDVTGG---------LQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTE 345 (441)
T ss_pred ECCCcc-cCCCCEEEeeecCCC---------ccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCH
Confidence 999999 899999999999986 688999999999999999752 1346667788888888665
Q ss_pred h
Q 013810 425 L 425 (436)
Q Consensus 425 ~ 425 (436)
.
T Consensus 346 ~ 346 (441)
T PRK08010 346 E 346 (441)
T ss_pred H
Confidence 3
No 14
>PLN02507 glutathione reductase
Probab=100.00 E-value=8.7e-39 Score=319.32 Aligned_cols=287 Identities=20% Similarity=0.290 Sum_probs=214.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC---------Ccceecchhhhh-----h---------------cCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMVFTPLLAST-----C---------------VGTL 111 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~---------~~~~~~~~~~~~-----~---------------~~~~ 111 (436)
.++||+||||||||+.||..+++.|.+|+|||+. ..++......+. + .|..
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~ 103 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWE 103 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4589999999999999999999999999999962 223222111000 0 0000
Q ss_pred -------ccccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEe
Q 013810 112 -------EFRSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (436)
Q Consensus 112 -------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViA 177 (436)
++..+.. .+......+....++.++.+++..++.....+.. .+|+ +..+.||+||||
T Consensus 104 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~---~~g~------~~~~~~d~LIIA 174 (499)
T PLN02507 104 INEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQ---LDGT------KLRYTAKHILIA 174 (499)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEe---CCCc------EEEEEcCEEEEe
Confidence 0000000 0111111233457899999999888876444432 2443 125889999999
Q ss_pred CCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHH
Q 013810 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (436)
Q Consensus 178 tG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~ 257 (436)
||++|..|++||.+ ... +.+++..+. ..| ++++|||+|++|+|+|..++.++
T Consensus 175 TGs~p~~p~ipG~~-~~~---~~~~~~~l~----------~~~----------k~vvVIGgG~ig~E~A~~l~~~G---- 226 (499)
T PLN02507 175 TGSRAQRPNIPGKE-LAI---TSDEALSLE----------ELP----------KRAVVLGGGYIAVEFASIWRGMG---- 226 (499)
T ss_pred cCCCCCCCCCCCcc-cee---chHHhhhhh----------hcC----------CeEEEECCcHHHHHHHHHHHHcC----
Confidence 99999999999863 222 223332221 112 38999999999999999998876
Q ss_pred HhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEec
Q 013810 258 RQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWST 331 (436)
Q Consensus 258 ~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~ 331 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. |++++. ++ +.+.+|+++++|.|++++
T Consensus 227 ----------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~ 296 (499)
T PLN02507 227 ----------ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFAT 296 (499)
T ss_pred ----------CeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEee
Confidence 899999995 47788999999999999999999999994 888863 33 555678889999999999
Q ss_pred CCCCc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 332 GVGPS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 332 G~~p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
|++|+ .+ ++..+++++++|+|.||+++| |+.|||||+|||++. +.+++.|.+||+.||+||..
T Consensus 297 G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~-Ts~p~IyAiGDv~~~---------~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 297 GRAPNTKRLNLEAVGVELDKAGAVKVDEYSR-TNIPSIWAIGDVTNR---------INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred cCCCCCCCCCchhhCcEECCCCcEecCCCCc-CCCCCEEEeeEcCCC---------CccHHHHHHHHHHHHHHHcC
Confidence 99999 43 567888888899999999999 899999999999985 67899999999999999974
No 15
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.2e-38 Score=315.87 Aligned_cols=282 Identities=21% Similarity=0.353 Sum_probs=212.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh--------------------cCc------ccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC--------------------VGT------LEFRS 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~--------------------~~~------~~~~~ 115 (436)
++||+||||||||++||+.+++.|++|+|||+. .++......+.. .|. .++..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 489999999999999999999999999999985 333221100000 000 00000
Q ss_pred c-------ccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCC
Q 013810 116 V-------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (436)
Q Consensus 116 ~-------~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~ 188 (436)
+ ...+.+.........++.++.+++..++.+ .+.+. .++. .+.||+||||||++|..|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~--~~g~--------~~~~d~lIiATGs~p~~p~i~ 148 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVL--QDGT--------TYTAKKILIAVGGRPQKPNLP 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEe--cCCe--------EEEcCEEEEecCCcCCCCCCC
Confidence 0 001112222234456899999998888764 34432 2454 799999999999999999999
Q ss_pred CCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013810 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (436)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~ 268 (436)
|.+. ..+ ..++.. +...| ++++|||+|++|+|+|..+++++ .
T Consensus 149 G~~~-~~~---~~~~~~----------l~~~~----------~~vvVIGgG~~g~E~A~~l~~~G--------------~ 190 (446)
T TIGR01424 149 GHEL-GIT---SNEAFH----------LPTLP----------KSILILGGGYIAVEFAGIWRGLG--------------V 190 (446)
T ss_pred Cccc-eec---hHHhhc----------ccccC----------CeEEEECCcHHHHHHHHHHHHcC--------------C
Confidence 8632 221 122221 11122 48999999999999999998776 8
Q ss_pred EEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCch-h--c
Q 013810 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPST-L--V 339 (436)
Q Consensus 269 ~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~-~--~ 339 (436)
+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++. + .+++.+|+++++|.|++|+|.+|+. . +
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l 270 (446)
T TIGR01424 191 QVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGL 270 (446)
T ss_pred eEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCc
Confidence 99999995 46788899999999999999999999984 888863 2 3556688899999999999999993 3 5
Q ss_pred ccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 340 ~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
+..+++++++|+|.||+++| |++|||||+|||++. +.+++.|.+||+.||+||..
T Consensus 271 ~~~g~~~~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~---------~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 271 EAAGVELNDAGAIAVDEYSR-TSIPSIYAVGDVTDR---------INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred cccCeEECCCCcEEeCCCCc-cCCCCEEEeeccCCC---------ccchhHHHHHHHHHHHHHhc
Confidence 77888888899999999999 899999999999975 67899999999999999975
No 16
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.9e-38 Score=316.32 Aligned_cols=303 Identities=20% Similarity=0.263 Sum_probs=219.9
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh--------------------hhcCcc-------c
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS--------------------TCVGTL-------E 112 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~--------------------~~~~~~-------~ 112 (436)
+.++||+||||||||++||.+|++.|++|+|||+... +......+ ...|.. +
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL-GGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD 81 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc-CCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence 3469999999999999999999999999999998632 21100000 001110 1
Q ss_pred ccccccch-------hhcchhhhcCC-CcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 113 FRSVAEPI-------ARIQPAISREP-GSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 113 ~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+..+.... ........+.. ++.++.++...+ +.+.+.+ ++. ++.||+||||||++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~--~~~~v~v----~~~--------~~~~d~lViATGs~p~~ 147 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFE--SPNTVRV----GGE--------TLRAKRIFINTGARAAI 147 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEc--cCCEEEE----CcE--------EEEeCEEEEcCCCCCCC
Confidence 11111000 01111122333 788888766543 3455654 343 78999999999999999
Q ss_pred CCCCCCcc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 013810 185 FGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (436)
Q Consensus 185 ~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~ 263 (436)
|++||.+. .+++..+ ... ....| ++|+|||+|++|+|+|..|++++
T Consensus 148 p~i~G~~~~~~~~~~~---~~~----------~~~~~----------~~vvVIGgG~~g~E~A~~l~~~G---------- 194 (463)
T PRK06370 148 PPIPGLDEVGYLTNET---IFS----------LDELP----------EHLVIIGGGYIGLEFAQMFRRFG---------- 194 (463)
T ss_pred CCCCCCCcCceEcchH---hhC----------ccccC----------CEEEEECCCHHHHHHHHHHHHcC----------
Confidence 99999753 2333222 111 11122 49999999999999999998876
Q ss_pred CCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--e--EEEc---CCcEEecceEEEecCCC
Q 013810 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILN---DGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 264 ~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~--v~~~---~g~~i~~D~vi~a~G~~ 334 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++.+ . +.+. +++++++|.||+|+|++
T Consensus 195 ----~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 195 ----SEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred ----CeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 899999995 57788889999999999999999999984 8888642 2 3332 34579999999999999
Q ss_pred Cc-h-h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh------
Q 013810 335 PS-T-L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL------ 405 (436)
Q Consensus 335 p~-~-~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~------ 405 (436)
|+ . + ++..+++++++|+|.||+++| |+.|+|||+|||+.. +++.+.|..||+.||+||...
T Consensus 271 pn~~~l~l~~~g~~~~~~G~i~vd~~l~-t~~~~IyAiGD~~~~---------~~~~~~A~~~g~~aa~ni~~~~~~~~~ 340 (463)
T PRK06370 271 PNTDDLGLEAAGVETDARGYIKVDDQLR-TTNPGIYAAGDCNGR---------GAFTHTAYNDARIVAANLLDGGRRKVS 340 (463)
T ss_pred cCCCCcCchhhCceECCCCcEeECcCCc-CCCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 99 4 4 567788889999999999999 899999999999986 678999999999999999753
Q ss_pred --cCCceeeecchhHHHHHHH
Q 013810 406 --ARNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 406 --~~~~~~~~~~~~~~~~~~~ 424 (436)
..++..+++..+.++|++.
T Consensus 341 ~~~~p~~~~~~p~ia~vG~te 361 (463)
T PRK06370 341 DRIVPYATYTDPPLARVGMTE 361 (463)
T ss_pred cccCCeEEEcCCCcEeeeCCH
Confidence 2345556677777777554
No 17
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.4e-38 Score=317.54 Aligned_cols=290 Identities=20% Similarity=0.244 Sum_probs=214.3
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhc---------------Ccc-----------cc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV---------------GTL-----------EF 113 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~---------------~~~-----------~~ 113 (436)
+.++||+||||||||++||..|++.|.+|+|||+.+.++......+... ... ++
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF 82 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence 3458999999999999999999999999999999755433211100000 000 00
Q ss_pred cccccc-------hhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 114 RSVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 114 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..+... +...........++.++.+++..++.. .+.+.. .+|. ...+.||+||||||+.|+.|+
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lviATGs~p~~p~ 153 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPH--TVEVEC-PDGE------VETLTADKIVIATGSRPYRPP 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCC--EEEEEe-CCCc------eEEEEcCEEEEcCCCCCCCCC
Confidence 000000 001111223456889999888777654 444432 1332 126899999999999999988
Q ss_pred CCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 187 IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 187 i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
+++.+ ..+++. .+...+ ...| ++++|||+|++|+|+|..|++++
T Consensus 154 ~~~~~~~~v~~~---~~~~~~----------~~~~----------~~v~IiGgG~~g~E~A~~l~~~g------------ 198 (461)
T PRK05249 154 DVDFDHPRIYDS---DSILSL----------DHLP----------RSLIIYGAGVIGCEYASIFAALG------------ 198 (461)
T ss_pred CCCCCCCeEEcH---HHhhch----------hhcC----------CeEEEECCCHHHHHHHHHHHHcC------------
Confidence 77754 223322 222111 1112 49999999999999999999876
Q ss_pred CccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCe--EEEcCCcEEecceEEEecCCCCc-hh
Q 013810 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPS-TL 338 (436)
Q Consensus 266 ~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~--v~~~~g~~i~~D~vi~a~G~~p~-~~ 338 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. +++++ ++. +++.+|+++++|.|++|+|++|+ .+
T Consensus 199 --~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 199 --VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred --CeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence 899999995 57888999999999999999999999984 88876 333 44567888999999999999999 33
Q ss_pred --cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 339 --VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 339 --~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
++..+++++++|+|.||+++| |+.|+|||+|||++. ++++..|..||+.||.||...
T Consensus 277 l~l~~~g~~~~~~G~i~vd~~~~-t~~~~IyAiGD~~~~---------~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 277 LNLENAGLEADSRGQLKVNENYQ-TAVPHIYAVGDVIGF---------PSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred CCchhhCcEecCCCcEeeCCCcc-cCCCCEEEeeecCCC---------cccHhHHHHHHHHHHHHHcCC
Confidence 567788888899999999999 899999999999975 678999999999999999843
No 18
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.5e-38 Score=315.39 Aligned_cols=311 Identities=18% Similarity=0.215 Sum_probs=226.7
Q ss_pred CCCCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---------------hh------cCc------
Q 013810 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------TC------VGT------ 110 (436)
Q Consensus 58 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---------------~~------~~~------ 110 (436)
+...++||+||||||||++||..|++.|++|+|||++. ++......+ .. .|.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 34567999999999999999999999999999999864 211100000 00 010
Q ss_pred ccccccccchhhcc--------hh-hhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCC
Q 013810 111 LEFRSVAEPIARIQ--------PA-ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181 (436)
Q Consensus 111 ~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~ 181 (436)
.++..+.....+.. .. +....++.++.+++..+|.+...+.+. +|+ +.+++||+||||||++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~---~g~------~~~~~~d~lViATGs~ 151 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLN---DGG------EQTVHFDRAFIGTGAR 151 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEec---CCC------eEEEECCEEEEeCCCC
Confidence 00111110001100 01 122347899999999998776555543 332 1279999999999999
Q ss_pred CCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 013810 182 ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (436)
Q Consensus 182 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~ 261 (436)
|+.|++||.+...+ .+..+...+ ...| ++++|||+|++|+|+|..|++++
T Consensus 152 p~~p~i~G~~~~~~--~~~~~~~~l----------~~~~----------~~vvViG~G~~G~E~A~~l~~~g-------- 201 (468)
T PRK14694 152 PAEPPVPGLAETPY--LTSTSALEL----------DHIP----------ERLLVIGASVVALELAQAFARLG-------- 201 (468)
T ss_pred CCCCCCCCCCCCce--Ecchhhhch----------hcCC----------CeEEEECCCHHHHHHHHHHHHcC--------
Confidence 99999999754211 111222221 1112 38999999999999999999876
Q ss_pred cCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEeC--CeEEE-cCCcEEecceEEEecCCCCch
Q 013810 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLIL-NDGTEVPYGLLVWSTGVGPST 337 (436)
Q Consensus 262 ~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~--~~v~~-~~g~~i~~D~vi~a~G~~p~~ 337 (436)
.+|++++++++++.+++++.+.+.+.|++.||+++.+ .+.+++. +.+.+ .++.++++|.|++|+|.+|+.
T Consensus 202 ------~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 202 ------SRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNT 275 (468)
T ss_pred ------CeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCc
Confidence 8999999887888889999999999999999999998 4888764 22322 234479999999999999994
Q ss_pred -h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-------C
Q 013810 338 -L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-------R 407 (436)
Q Consensus 338 -~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-------~ 407 (436)
+ +..++++. ++|+|.||+++| |++|+|||+|||+.. +..++.|..||+.||.||.... .
T Consensus 276 ~~l~l~~~g~~~-~~G~i~vd~~~~-Ts~~~IyA~GD~~~~---------~~~~~~A~~~G~~aa~~i~~~~~~~~~~~~ 344 (468)
T PRK14694 276 ENLNLESIGVET-ERGAIRIDEHLQ-TTVSGIYAAGDCTDQ---------PQFVYVAAAGGSRAAINMTGGDASLDLSAM 344 (468)
T ss_pred CCCCchhcCccc-CCCeEeeCCCcc-cCCCCEEEEeecCCC---------cccHHHHHHHHHHHHHHhcCCCcccccCCC
Confidence 4 35567775 478999999999 899999999999986 6788999999999999997422 4
Q ss_pred CceeeecchhHHHHHHHh
Q 013810 408 NWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~ 425 (436)
+++.++++.+..+|++..
T Consensus 345 p~~~~~~p~~a~vGlte~ 362 (468)
T PRK14694 345 PEVIFTDPQVATVGLSEA 362 (468)
T ss_pred CeEEECCCCeEEeeCCHH
Confidence 678888888888886653
No 19
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.9e-38 Score=315.35 Aligned_cols=280 Identities=22% Similarity=0.318 Sum_probs=211.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----h-----------hhh------cCc------cccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STC------VGT------LEFR 114 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----~-----------~~~------~~~------~~~~ 114 (436)
++||+||||||||++||..|++.|++|+|||+. .++..... + ... .|. .++.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 589999999999999999999999999999986 32221100 0 000 000 0001
Q ss_pred cccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
.+.. .+.+.........++.++.+++..++. +.+.+ ++. ++.||+||||||++|+.|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~----~g~--------~~~~d~lViATGs~p~~p~i 148 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV----NGE--------RYTADHILIATGGRPSIPDI 148 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE----CCE--------EEEeCEEEEecCCCCCCCCC
Confidence 0000 011111112334689999998887764 45554 444 79999999999999999999
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
||.+ ..++..+. .. +...| ++|+|||+|++|+|+|..|++++
T Consensus 149 ~g~~-~~~~~~~~---~~----------~~~~~----------~~vvViGgG~~g~E~A~~l~~~g-------------- 190 (450)
T PRK06116 149 PGAE-YGITSDGF---FA----------LEELP----------KRVAVVGAGYIAVEFAGVLNGLG-------------- 190 (450)
T ss_pred CCcc-eeEchhHh---hC----------ccccC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 9863 22222111 11 11122 49999999999999999998776
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcEEecceEEEecCCCCc-hh-
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPS-TL- 338 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~p~-~~- 338 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.++ |.+++. + .+.+.+|+++++|.|++|+|.+|+ ..
T Consensus 191 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l 270 (450)
T PRK06116 191 SETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGL 270 (450)
T ss_pred CeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCC
Confidence 899999995 46788899999999999999999999984 888863 2 356678889999999999999999 32
Q ss_pred -cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
++..+++++++|+|.||+++| |++|||||+|||++. ++++..|++||+.||+||..
T Consensus 271 ~l~~~g~~~~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 271 GLENAGVKLNEKGYIIVDEYQN-TNVPGIYAVGDVTGR---------VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CchhcCceECCCCcEecCCCCC-cCCCCEEEEeecCCC---------cCcHHHHHHHHHHHHHHHhC
Confidence 567888889999999999999 899999999999975 67899999999999999985
No 20
>PLN02546 glutathione reductase
Probab=100.00 E-value=5.1e-38 Score=315.01 Aligned_cols=303 Identities=20% Similarity=0.262 Sum_probs=219.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC---------Ccceecch---------------hhhhh-----cCc-
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMVFTPL---------------LASTC-----VGT- 110 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~---------~~~~~~~~---------------~~~~~-----~~~- 110 (436)
.++||+||||||||+.||..+++.|.+|+|||+. ..++.... +.... .|.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 3589999999999999999999999999999951 11111100 00000 000
Q ss_pred ------ccccccc-------cchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEe
Q 013810 111 ------LEFRSVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (436)
Q Consensus 111 ------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViA 177 (436)
.++..+. ..+........+..++.++.++++.++.. .+.+ +|. ++.||+||||
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~V~v----~G~--------~~~~D~LVIA 223 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--TVDV----DGK--------LYTARNILIA 223 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--EEEE----CCE--------EEECCEEEEe
Confidence 0111110 01111222234456899999988888764 4543 454 7999999999
Q ss_pred CCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHH
Q 013810 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (436)
Q Consensus 178 tG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~ 257 (436)
||++|..|++||.+ .++ +..++..+ . ..+++|+|||+|++|+|+|..|+.++
T Consensus 224 TGs~p~~P~IpG~~-~v~---~~~~~l~~----------~----------~~~k~V~VIGgG~iGvE~A~~L~~~g---- 275 (558)
T PLN02546 224 VGGRPFIPDIPGIE-HAI---DSDAALDL----------P----------SKPEKIAIVGGGYIALEFAGIFNGLK---- 275 (558)
T ss_pred CCCCCCCCCCCChh-hcc---CHHHHHhc----------c----------ccCCeEEEECCCHHHHHHHHHHHhcC----
Confidence 99999999999963 222 22222211 1 12349999999999999999998776
Q ss_pred HhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC---CeEE--EcCCcEEecceEEEe
Q 013810 258 RQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QKLI--LNDGTEVPYGLLVWS 330 (436)
Q Consensus 258 ~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~---~~v~--~~~g~~i~~D~vi~a 330 (436)
.+|+++++. .+++.+++++.+.+.+.|+++||+++.+. +.+++. +.+. +.+++.+.+|.|+++
T Consensus 276 ----------~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva 345 (558)
T PLN02546 276 ----------SDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFA 345 (558)
T ss_pred ----------CeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEe
Confidence 899999985 57888999999999999999999999984 777752 3333 344544568999999
Q ss_pred cCCCCch-h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-
Q 013810 331 TGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA- 406 (436)
Q Consensus 331 ~G~~p~~-~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~- 406 (436)
+|++|+. + ++.++++++++|+|.||+++| |++|||||+|||++. +.+++.|..||+.+|+||....
T Consensus 346 ~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~-Ts~p~IYAaGDv~~~---------~~l~~~A~~~g~~~a~~i~g~~~ 415 (558)
T PLN02546 346 TGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSR-TSVPSIWAVGDVTDR---------INLTPVALMEGGALAKTLFGNEP 415 (558)
T ss_pred eccccCCCcCChhhcCCcCCCCCcEeECCCce-eCCCCEEEeeccCCC---------cccHHHHHHHHHHHHHHHcCCCC
Confidence 9999994 3 578899999899999999999 899999999999986 6789999999999999998532
Q ss_pred -------CCceeeecchhHHHHHHHh
Q 013810 407 -------RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 -------~~~~~~~~~~~~~~~~~~~ 425 (436)
.++..+-+..+..+|++..
T Consensus 416 ~~~~~~~vp~~vft~Peia~VGlte~ 441 (558)
T PLN02546 416 TKPDYRAVPSAVFSQPPIGQVGLTEE 441 (558)
T ss_pred CcCCCCCCCEEEeCCchHhhccCCHH
Confidence 2344333446666776553
No 21
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-38 Score=317.01 Aligned_cols=307 Identities=19% Similarity=0.196 Sum_probs=220.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh--------------------cCc------cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC--------------------VGT------LEFR 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~--------------------~~~------~~~~ 114 (436)
.++||+||||||||++||..|++.|.+|+|||+.+.++......+.. .|. .++.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 45899999999999999999999999999999875543321100000 000 0011
Q ss_pred ccccch-------hhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC-CC
Q 013810 115 SVAEPI-------ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST-FG 186 (436)
Q Consensus 115 ~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~-~~ 186 (436)
.+.... ......+.+..++.++.+++..++ .+.+.+.. .+|+ ..++.||+||||||++|+. |.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~~p~ 153 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTLEVTG-EDGK------TTVIEFDNAIIAAGSRPIQLPF 153 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEec-CCCc------eEEEEcCEEEEeCCCCCCCCCC
Confidence 110000 001112234568999998877665 35555543 2331 1278999999999999974 44
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013810 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (436)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~ 266 (436)
+++..+.++.. .++..+ ...| ++++|||+|++|+|+|..|.+++
T Consensus 154 ~~~~~~~v~~~---~~~~~~----------~~~~----------~~vvIiGgG~iG~E~A~~l~~~G------------- 197 (471)
T PRK06467 154 IPHDDPRIWDS---TDALEL----------KEVP----------KRLLVMGGGIIGLEMGTVYHRLG------------- 197 (471)
T ss_pred CCCCCCcEECh---HHhhcc----------ccCC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 55543333322 222221 1223 49999999999999999999876
Q ss_pred ccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEcC--C--cEEecceEEEecCCCCc
Q 013810 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILND--G--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 267 ~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~~--g--~~i~~D~vi~a~G~~p~ 336 (436)
.+|+++++. .+++.+++++.+.+.+.|++. |+++.+. +++++ ++.+ ++.+ + +++++|.|++++|++|+
T Consensus 198 -~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 198 -SEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred -CCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 899999995 578889999999999999988 9999984 88775 3333 3333 2 36999999999999999
Q ss_pred -hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh-------c
Q 013810 337 -TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-------A 406 (436)
Q Consensus 337 -~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-------~ 406 (436)
++ +...+++++++|+|.||+++| |++|+|||+|||++. +.+++.|.+||+.||.||... .
T Consensus 276 ~~~l~~~~~gl~~~~~G~I~Vd~~~~-t~~p~VyAiGDv~~~---------~~la~~A~~eG~~aa~~i~g~~~~~~~~~ 345 (471)
T PRK06467 276 GKLLDAEKAGVEVDERGFIRVDKQCR-TNVPHIFAIGDIVGQ---------PMLAHKGVHEGHVAAEVIAGKKHYFDPKV 345 (471)
T ss_pred CCccChhhcCceECCCCcEeeCCCcc-cCCCCEEEehhhcCC---------cccHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 33 466788899999999999999 899999999999975 678999999999999999742 2
Q ss_pred CCceeeecchhHHHHHHH
Q 013810 407 RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~ 424 (436)
.+++.+++..+..++++.
T Consensus 346 ~p~~~~~~p~ia~vGlte 363 (471)
T PRK06467 346 IPSIAYTEPEVAWVGLTE 363 (471)
T ss_pred CCeEEECCCceeEEECCH
Confidence 456667777777777554
No 22
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.2e-38 Score=311.81 Aligned_cols=306 Identities=20% Similarity=0.304 Sum_probs=221.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc-eecchhhhhhc-C--------ccccccccc-------chhhcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VFTPLLASTCV-G--------TLEFRSVAE-------PIARIQ 124 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~-~~~~~~~~~~~-~--------~~~~~~~~~-------~~~~~~ 124 (436)
++||+||||||||++||..|++.|++|+|||+++.. +......+... . ..++.+... .+....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999998642 22211100000 0 001111111 111111
Q ss_pred hhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc--ccccccChHH
Q 013810 125 PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE--NATFLREVHH 202 (436)
Q Consensus 125 ~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~--~~~~~~~~~~ 202 (436)
.......++.++.+++..+ +.+.+.+....+.. .+.||+||||||++|+.|++||.++ ++++. .+
T Consensus 83 ~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~~~~--------~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~---~~ 149 (438)
T PRK07251 83 YAMLAGSGVDLYDAEAHFV--SNKVIEVQAGDEKI--------ELTAETIVINTGAVSNVLPIPGLADSKHVYDS---TG 149 (438)
T ss_pred HHHHHhCCCEEEEEEEEEc--cCCEEEEeeCCCcE--------EEEcCEEEEeCCCCCCCCCCCCcCCCCcEEch---HH
Confidence 1223456888888877554 45666664311112 6899999999999999999999742 23322 22
Q ss_pred HHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCc
Q 013810 203 AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS 281 (436)
Q Consensus 203 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~ 281 (436)
+..+ ...| ++|+|||+|++|+|+|..+++++ .+|+++++. .+++.
T Consensus 150 ~~~~----------~~~~----------~~vvIIGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 150 IQSL----------ETLP----------ERLGIIGGGNIGLEFAGLYNKLG--------------SKVTVLDAASTILPR 195 (438)
T ss_pred Hhcc----------hhcC----------CeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCccCCC
Confidence 2111 1123 38999999999999999998766 899999995 57777
Q ss_pred ccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeEE-EcCCcEEecceEEEecCCCCc-hh--cccCCCCCCCCCcEEe
Q 013810 282 FDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLI-LNDGTEVPYGLLVWSTGVGPS-TL--VKSLDLPKSPGGRIGI 354 (436)
Q Consensus 282 ~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v~-~~~g~~i~~D~vi~a~G~~p~-~~--~~~~~l~~~~~G~i~v 354 (436)
+++++.+.+.+.+++.||+++.+. +++++. +.+. ..+++++++|.+++|+|.+|+ +. ++..++..+++|+|.|
T Consensus 196 ~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~v 275 (438)
T PRK07251 196 EEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKV 275 (438)
T ss_pred CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEE
Confidence 889999999999999999999984 888864 2333 346778999999999999998 33 3445677778899999
Q ss_pred CCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh---------cCCceeeecchhHHHHHHH
Q 013810 355 DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL---------ARNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 355 d~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~---------~~~~~~~~~~~~~~~~~~~ 424 (436)
|+++| |+.|||||+|||++. +.+...|..+|+.++.++... ..++..++++.+..+|++.
T Consensus 276 d~~~~-t~~~~IyaiGD~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte 344 (438)
T PRK07251 276 DDYCQ-TSVPGVFAVGDVNGG---------PQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTE 344 (438)
T ss_pred CCCcc-cCCCCEEEeeecCCC---------cccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCH
Confidence 99999 899999999999986 678899999999999888632 2345666888888887544
No 23
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.9e-38 Score=315.31 Aligned_cols=306 Identities=22% Similarity=0.288 Sum_probs=220.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhc--------------------Cc------cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV--------------------GT------LEFR 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~--------------------~~------~~~~ 114 (436)
..+||+||||||||++||..|++.|++|+|||++. ++......+... |. .++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999876 322211100000 00 0011
Q ss_pred ccccchh-------hcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 115 SVAEPIA-------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 115 ~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
.+..... .......+..++.++.++++.++.. .+.+....++. .+.||+||||||++|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~--~~~v~~~~~~~--------~~~~d~lViAtGs~p~~~-- 149 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPN--TVRVMTEDGEQ--------TYTAKNIILATGSRPREL-- 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC--EEEEecCCCcE--------EEEeCEEEEeCCCCCCCC--
Confidence 1110100 0011233457899999988877654 34443212223 799999999999998754
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
||.+.....+.+..++..+. ..| ++++|||+|++|+|+|..|++.+
T Consensus 150 pg~~~~~~~v~~~~~~~~~~----------~~~----------~~vvVvGgG~~g~E~A~~l~~~g-------------- 195 (462)
T PRK06416 150 PGIEIDGRVIWTSDEALNLD----------EVP----------KSLVVIGGGYIGVEFASAYASLG-------------- 195 (462)
T ss_pred CCCCCCCCeEEcchHhhCcc----------ccC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 45432111222333332211 112 48999999999999999998766
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--eE--EEcCC---cEEecceEEEecCCCCc-h
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--KL--ILNDG---TEVPYGLLVWSTGVGPS-T 337 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~v--~~~~g---~~i~~D~vi~a~G~~p~-~ 337 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. |.+++.+ .+ .+.++ +++++|.||+|+|.+|+ .
T Consensus 196 ~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 196 AEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 899999994 57788899999999999999999999994 8888643 33 44555 67999999999999999 4
Q ss_pred h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-------CC
Q 013810 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-------RN 408 (436)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-------~~ 408 (436)
+ ++..+++++ +|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.||.||.... .+
T Consensus 276 ~l~l~~~gl~~~-~g~i~vd~~~~-t~~~~VyAiGD~~~~---------~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~ 344 (462)
T PRK06416 276 NLGLEELGVKTD-RGFIEVDEQLR-TNVPNIYAIGDIVGG---------PMLAHKASAEGIIAAEAIAGNPHPIDYRGIP 344 (462)
T ss_pred CCCchhcCCeec-CCEEeECCCCc-cCCCCEEEeeecCCC---------cchHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 4 357788888 89999999999 999999999999975 6789999999999999998532 45
Q ss_pred ceeeecchhHHHHHHH
Q 013810 409 WCWFFDVCSLTSILNR 424 (436)
Q Consensus 409 ~~~~~~~~~~~~~~~~ 424 (436)
.+.+++..+..+|++.
T Consensus 345 ~~~~~~~~~a~vG~te 360 (462)
T PRK06416 345 AVTYTHPEVASVGLTE 360 (462)
T ss_pred eEEECCCceEEEeCCH
Confidence 6777888777777554
No 24
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.5e-37 Score=315.88 Aligned_cols=308 Identities=18% Similarity=0.189 Sum_probs=223.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh-------------------hh--cCc------ccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS-------------------TC--VGT------LEF 113 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~-------------------~~--~~~------~~~ 113 (436)
.++||+||||||||++||..|++.|.+|+|||++ .++......+ .. .|. .++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3689999999999999999999999999999987 4332210000 00 011 001
Q ss_pred cccccchh----h-----cchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 114 RSVAEPIA----R-----IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 114 ~~~~~~~~----~-----~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..+..... . +...+....++.++.+++..++.. .+.+.. .+|+ .+.+.||+||||||++|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lviAtGs~p~~ 246 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQ--TLIVRL-NDGG------ERVVAFDRCLIATGASPAV 246 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCC--EEEEEe-CCCc------eEEEEcCEEEEcCCCCCCC
Confidence 11100000 0 001112223789999988887754 444432 2332 1268999999999999999
Q ss_pred CCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 013810 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (436)
Q Consensus 185 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~ 264 (436)
|++||.+...+ .+..+... ....| ++++|||+|++|+|+|..|.+++
T Consensus 247 p~i~g~~~~~~--~~~~~~~~----------~~~~~----------~~vvViGgG~ig~E~A~~l~~~g----------- 293 (561)
T PRK13748 247 PPIPGLKETPY--WTSTEALV----------SDTIP----------ERLAVIGSSVVALELAQAFARLG----------- 293 (561)
T ss_pred CCCCCCCccce--EccHHHhh----------cccCC----------CeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 99999753221 11111111 11122 49999999999999999999877
Q ss_pred CCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeEEE-cCCcEEecceEEEecCCCCch-h-
Q 013810 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLIL-NDGTEVPYGLLVWSTGVGPST-L- 338 (436)
Q Consensus 265 ~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v~~-~~g~~i~~D~vi~a~G~~p~~-~- 338 (436)
.+|++++++.+++.+++++.+.+.+.|++.||+++.+. +++++. +.+.+ .++.++++|.|++++|++|+. +
T Consensus 294 ---~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l 370 (561)
T PRK13748 294 ---SKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSL 370 (561)
T ss_pred ---CEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCc
Confidence 89999999777888899999999999999999999984 888753 33332 233469999999999999994 3
Q ss_pred -cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh-------cCCce
Q 013810 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-------ARNWC 410 (436)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-------~~~~~ 410 (436)
++..+++++++|+|.||+++| |+.|||||+|||+.. +..+..|..||+.||.||+.. ..+.+
T Consensus 371 ~l~~~g~~~~~~g~i~vd~~~~-Ts~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~ 440 (561)
T PRK13748 371 ALDAAGVTVNAQGAIVIDQGMR-TSVPHIYAAGDCTDQ---------PQFVYVAAAAGTRAAINMTGGDAALDLTAMPAV 440 (561)
T ss_pred CchhcCceECCCCCEeECCCcc-cCCCCEEEeeecCCC---------ccchhHHHHHHHHHHHHHcCCCcccCCCCCCeE
Confidence 567889999899999999999 899999999999986 678899999999999999742 23567
Q ss_pred eeecchhHHHHHHH
Q 013810 411 WFFDVCSLTSILNR 424 (436)
Q Consensus 411 ~~~~~~~~~~~~~~ 424 (436)
.+++..+..+|++.
T Consensus 441 ~~~~p~~a~vGlte 454 (561)
T PRK13748 441 VFTDPQVATVGYSE 454 (561)
T ss_pred EEccCCceeeeCCH
Confidence 77888888888655
No 25
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=2e-37 Score=308.36 Aligned_cols=307 Identities=22% Similarity=0.285 Sum_probs=221.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh--------------------cCcc---------cc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC--------------------VGTL---------EF 113 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~--------------------~~~~---------~~ 113 (436)
++|+|||||+||+.||..+++.|.+|+|||++. +.......+.. .|.. ++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 689999999999999999999999999999875 22211100000 0100 00
Q ss_pred cccccch-------hhcchhhhcCCCcEEEEeEeEeEe--CCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 114 RSVAEPI-------ARIQPAISREPGSYFFLSHCAGID--TDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 114 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~id--~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..+.... ...........+++++.+++..++ .+.+.+.+.. .+|. ..++.||+||||||++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~-~~g~------~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTT-ADGG------EETLDADVVLIATGASPRI 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEe-CCCc------eEEEecCEEEEcCCCCCCC
Confidence 0000000 111112233468999999888755 4456666543 2332 1268999999999999987
Q ss_pred CCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 013810 185 FGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (436)
Q Consensus 185 ~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~ 263 (436)
|++++.+ +.+++..++.+. ...| ++++|||+|.+|+|+|..|++++
T Consensus 154 ~p~~~~~~~~v~~~~~~~~~-------------~~~~----------~~vvVIGgG~ig~E~A~~l~~~g---------- 200 (466)
T PRK07845 154 LPTAEPDGERILTWRQLYDL-------------DELP----------EHLIVVGSGVTGAEFASAYTELG---------- 200 (466)
T ss_pred CCCCCCCCceEEeehhhhcc-------------cccC----------CeEEEECCCHHHHHHHHHHHHcC----------
Confidence 7665543 334443332211 1123 38999999999999999998876
Q ss_pred CCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCe--EEEcCCcEEecceEEEecCCCCch
Q 013810 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPST 337 (436)
Q Consensus 264 ~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~--v~~~~g~~i~~D~vi~a~G~~p~~ 337 (436)
.+|+++++. .+++.+++++.+.+.+.|+++||+++.+. +.+++ +++ +.+.+|+++++|.|++++|++|+.
T Consensus 201 ----~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 201 ----VKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred ----CeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 899999984 57888899999999999999999999984 88885 333 455788899999999999999994
Q ss_pred -h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc--------
Q 013810 338 -L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-------- 406 (436)
Q Consensus 338 -~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-------- 406 (436)
. +++++++++++|+|.||+++| |+.|||||+|||++. +++++.|..||+.||.||+...
T Consensus 277 ~~l~l~~~gl~~~~~G~i~Vd~~~~-Ts~~~IyA~GD~~~~---------~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~ 346 (466)
T PRK07845 277 AGLGLEEAGVELTPSGHITVDRVSR-TSVPGIYAAGDCTGV---------LPLASVAAMQGRIAMYHALGEAVSPLRLKT 346 (466)
T ss_pred CCCCchhhCceECCCCcEeECCCcc-cCCCCEEEEeeccCC---------ccchhHHHHHHHHHHHHHcCCCCCcCCCCC
Confidence 3 577889999999999999999 899999999999986 7889999999999999998532
Q ss_pred CCceeeecchhHHHHHHH
Q 013810 407 RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~ 424 (436)
.+...+.++.+..++++.
T Consensus 347 ~p~~vf~~p~~a~vGlte 364 (466)
T PRK07845 347 VASNVFTRPEIATVGVSQ 364 (466)
T ss_pred CCEEEeCCCcceeecCCH
Confidence 122333356666666544
No 26
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1e-37 Score=311.17 Aligned_cols=302 Identities=21% Similarity=0.232 Sum_probs=221.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----h-----------hhhc----C------cccccccc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STCV----G------TLEFRSVA 117 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----~-----------~~~~----~------~~~~~~~~ 117 (436)
+||+||||||||++||..|++.|.+|+|||+++ ++..... + .... | ..++..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 589999999999999999999999999999864 3222110 0 0000 0 00111000
Q ss_pred c-------chhh-cchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCC
Q 013810 118 E-------PIAR-IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (436)
Q Consensus 118 ~-------~~~~-~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g 189 (436)
. .+.. ....+.+..++.++.+++..++ .+.+.+. ++. ..+.||+||||||++|+.|++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~---~g~-------~~~~~~~lIiATGs~p~~p~i~G 147 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVD---LGR-------EVRGAKRFLIATGARPAIPPIPG 147 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEc---CCe-------EEEEeCEEEEcCCCCCCCCCCCC
Confidence 0 0100 0112344568889888877654 4566553 332 15789999999999999999999
Q ss_pred Cccc-cccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013810 190 VKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (436)
Q Consensus 190 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~ 268 (436)
.+.. +++. .++.. ....| ++++|||+|.+|+|+|..|++++ .
T Consensus 148 ~~~~~~~~~---~~~~~----------~~~~~----------~~vvIIGgG~~g~E~A~~l~~~g--------------~ 190 (463)
T TIGR02053 148 LKEAGYLTS---EEALA----------LDRIP----------ESLAVIGGGAIGVELAQAFARLG--------------S 190 (463)
T ss_pred cccCceECc---hhhhC----------cccCC----------CeEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 7532 2222 22211 11112 48999999999999999999876 8
Q ss_pred EEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--e--EEEc---CCcEEecceEEEecCCCCc-h-
Q 013810 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILN---DGTEVPYGLLVWSTGVGPS-T- 337 (436)
Q Consensus 269 ~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~--v~~~---~g~~i~~D~vi~a~G~~p~-~- 337 (436)
+|+++++. .+++.+++++.+.+.+.+++.||+++.++ |++++.+ . +.+. +++++++|.|++|+|++|+ .
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 191 EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 99999995 67888899999999999999999999995 8888642 2 3333 2357999999999999999 4
Q ss_pred h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh-c-------CC
Q 013810 338 L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-A-------RN 408 (436)
Q Consensus 338 ~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-~-------~~ 408 (436)
+ ++..+++++++|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.||.||... . .+
T Consensus 271 l~l~~~g~~~~~~G~i~vd~~~~-Ts~~~VyAiGD~~~~---------~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p 340 (463)
T TIGR02053 271 LGLEKAGVKLDERGGILVDETLR-TSNPGIYAAGDVTGG---------LQLEYVAAKEGVVAAENALGGANAKLDLLVIP 340 (463)
T ss_pred CCccccCCEECCCCcEeECCCcc-CCCCCEEEeeecCCC---------cccHhHHHHHHHHHHHHhcCCCCCccCcCCCC
Confidence 4 677788888899999999999 899999999999986 678999999999999999854 2 34
Q ss_pred ceeeecchhHHHHHHH
Q 013810 409 WCWFFDVCSLTSILNR 424 (436)
Q Consensus 409 ~~~~~~~~~~~~~~~~ 424 (436)
++.++++.+..++++.
T Consensus 341 ~~~~~~p~~a~vGlte 356 (463)
T TIGR02053 341 RVVFTDPAVASVGLTE 356 (463)
T ss_pred eEEeccCceEEEeCCH
Confidence 5666777777777554
No 27
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=2e-37 Score=310.55 Aligned_cols=313 Identities=18% Similarity=0.234 Sum_probs=216.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh--------------------hcCc-----ccccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--------------------CVGT-----LEFRS 115 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~--------------------~~~~-----~~~~~ 115 (436)
.++||+||||||||++||..+++.|.+|+|||++. ++......+. ..|. .++..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 46899999999999999999999999999999863 2221100000 0010 01111
Q ss_pred ccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEE--------------------EE-----EecCCcccCC
Q 013810 116 VAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVH--------------------CE-----TVTDELRTLE 163 (436)
Q Consensus 116 ~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~--------------------~~-----~~~~g~~~~~ 163 (436)
+.. .+.+......+..++.++.++..-++ .++|. +. ...+|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~--~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~---- 199 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLS--ENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQ---- 199 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEec--CCEEEeeccccccccccccccccceeeeccceecCCCc----
Confidence 000 11111222334568888887654333 22322 21 112333
Q ss_pred CCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHH
Q 013810 164 PWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 243 (436)
Q Consensus 164 ~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~ 243 (436)
++.||+||||||++|+.|++||.+ .+++. ++... +. .+++|+|||+|++|+
T Consensus 200 ----~i~ad~lVIATGS~P~~P~IpG~~-~v~ts---~~~~~----------l~-----------~pk~VvIIGgG~iGl 250 (561)
T PTZ00058 200 ----VIEGKNILIAVGNKPIFPDVKGKE-FTISS---DDFFK----------IK-----------EAKRIGIAGSGYIAV 250 (561)
T ss_pred ----EEECCEEEEecCCCCCCCCCCCce-eEEEH---HHHhh----------cc-----------CCCEEEEECCcHHHH
Confidence 799999999999999999999863 23222 22111 11 134999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC---eE--EE
Q 013810 244 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KL--IL 316 (436)
Q Consensus 244 e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~---~v--~~ 316 (436)
|+|..+++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++++ ++ .+
T Consensus 251 E~A~~l~~~G--------------~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~ 316 (561)
T PTZ00058 251 ELINVVNRLG--------------AESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYL 316 (561)
T ss_pred HHHHHHHHcC--------------CcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEE
Confidence 9999999877 899999995 57888999999999999999999999995 8888642 23 33
Q ss_pred cCC-cEEecceEEEecCCCCc-hhc--ccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccccc---------------
Q 013810 317 NDG-TEVPYGLLVWSTGVGPS-TLV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE--------------- 377 (436)
Q Consensus 317 ~~g-~~i~~D~vi~a~G~~p~-~~~--~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~--------------- 377 (436)
.++ +++++|.|++|+|++|+ .++ +..++. +++|+|.||+++| |+.|+|||+|||+..+.
T Consensus 317 ~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~lq-Ts~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~ 394 (561)
T PTZ00058 317 SDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQR-TSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNE 394 (561)
T ss_pred CCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCCc-cCCCCEEEeEeccCcccccccccccccccccc
Confidence 344 57999999999999999 333 223333 4579999999999 99999999999998432
Q ss_pred ---------CCCCcc-CCccHHHHHHHHHHHHhhhhhhc--------CCceeeecchhHHHHHHHh
Q 013810 378 ---------STGKTV-LPALAQVSYEQLHLFQKPSFLLA--------RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 378 ---------~~~~~~-~~~~~~~A~~~g~~aa~~i~~~~--------~~~~~~~~~~~~~~~~~~~ 425 (436)
.+++.. .+++++.|.+||++||.||+... .++..+.+..+..+|++..
T Consensus 395 ~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~ 460 (561)
T PTZ00058 395 EPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQ 460 (561)
T ss_pred ccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCCchheeeeCCHH
Confidence 233333 37899999999999999997531 2344444456667776654
No 28
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=3.1e-37 Score=306.22 Aligned_cols=315 Identities=23% Similarity=0.277 Sum_probs=220.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccC-CCeEEEEcCC--------Ccceecchhhhh---------------h-----cCc-
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPR--------NHMVFTPLLAST---------------C-----VGT- 110 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~--------~~~~~~~~~~~~---------------~-----~~~- 110 (436)
.++||+||||||||+.||..+++. |.+|+|||++ ..++......+. . .|.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 458999999999999999999996 8999999973 223221100000 0 000
Q ss_pred -------cccccccc-------chhhcchhhhcC-CCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEE
Q 013810 111 -------LEFRSVAE-------PIARIQPAISRE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175 (436)
Q Consensus 111 -------~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lV 175 (436)
.++..+.. .+........+. .++.++.++..-++ .+.+.+....++.. ..++.+.||+||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~~---~~~~~~~~d~lI 156 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPKS---AVKERLQAEHIL 156 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCCC---CcceEEECCEEE
Confidence 00000000 111111112223 48999988765444 46666643211110 001279999999
Q ss_pred EeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHH
Q 013810 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255 (436)
Q Consensus 176 iAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~ 255 (436)
||||++|..|++||.+ .+++ ..++.. +...| ++++|||+|++|+|+|..+..+.
T Consensus 157 IATGs~p~~p~i~G~~-~~~~---~~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~~~~l~-- 210 (486)
T TIGR01423 157 LATGSWPQMLGIPGIE-HCIS---SNEAFY----------LDEPP----------RRVLTVGGGFISVEFAGIFNAYK-- 210 (486)
T ss_pred EecCCCCCCCCCCChh-heec---hhhhhc----------cccCC----------CeEEEECCCHHHHHHHHHHHHhc--
Confidence 9999999999999863 2222 222211 11223 48999999999999999887652
Q ss_pred HHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcEEecceEE
Q 013810 256 DVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLV 328 (436)
Q Consensus 256 ~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~i~~D~vi 328 (436)
+.+.+|+|+++. .+++.+++++.+.+.+.|++.||+++.+. +++++. + .+.+.+|+++++|.|+
T Consensus 211 ---------~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl 281 (486)
T TIGR01423 211 ---------PRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVM 281 (486)
T ss_pred ---------cCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEE
Confidence 124899999985 57889999999999999999999999995 888863 2 3666788899999999
Q ss_pred EecCCCCch-h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 329 WSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 329 ~a~G~~p~~-~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+++|++|+. + ++..+++++++|+|.||+++| |+.|||||+|||++. +.+++.|.+||+.||+||+..
T Consensus 282 ~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~-Ts~~~IyA~GDv~~~---------~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 282 MAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR-TNVPNIYAIGDVTDR---------VMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred EeeCCCcCcccCCchhhCceECCCCCEecCCCCc-CCCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHhCC
Confidence 999999993 3 466788888899999999999 999999999999985 778999999999999999752
Q ss_pred c--------CCceeeecchhHHHHHHHh
Q 013810 406 A--------RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 406 ~--------~~~~~~~~~~~~~~~~~~~ 425 (436)
. .|++.+-...+..+|++..
T Consensus 352 ~~~~~~~~~vp~~vft~peia~vGlte~ 379 (486)
T TIGR01423 352 KPRKTDHTRVASAVFSIPPIGTCGLVEE 379 (486)
T ss_pred CCcccCCCCCCEEEeCCCceEEeeCCHH
Confidence 2 2333333345555565543
No 29
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=2.9e-37 Score=307.29 Aligned_cols=309 Identities=19% Similarity=0.196 Sum_probs=222.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC--------cceecchh----h-----------hhh-----cCcc--
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPLL----A-----------STC-----VGTL-- 111 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~--------~~~~~~~~----~-----------~~~-----~~~~-- 111 (436)
++||+||||||||+.||..+++.|.+|+|||+.. .++..... + ... .|..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4799999999999999999999999999999631 11111000 0 000 0000
Q ss_pred -----ccccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 112 -----EFRSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 112 -----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
++..+.. .+........+..++.++.++..-++. +.+.+... ++. ...+.||+||||||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~-~g~------~~~~~~d~lVIATG 152 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNK-KGK------EKIYSAERFLIATG 152 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEecc-CCC------ceEEEeCEEEEecC
Confidence 0000000 011111123445688899888776664 45555422 222 12699999999999
Q ss_pred CCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHh
Q 013810 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (436)
Q Consensus 180 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~ 259 (436)
++|+.|++||.++..++. .+... +...| ++++|||+|++|+|+|..|++++
T Consensus 153 s~p~~p~ipG~~~~~~~~---~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~G------ 203 (484)
T TIGR01438 153 ERPRYPGIPGAKELCITS---DDLFS----------LPYCP----------GKTLVVGASYVALECAGFLAGIG------ 203 (484)
T ss_pred CCCCCCCCCCccceeecH---HHhhc----------ccccC----------CCEEEECCCHHHHHHHHHHHHhC------
Confidence 999999999975432222 22211 11223 38999999999999999999877
Q ss_pred hhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCC---cEEecceEEEec
Q 013810 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDG---TEVPYGLLVWST 331 (436)
Q Consensus 260 ~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g---~~i~~D~vi~a~ 331 (436)
.+|++++++.+++.+++++.+.+.+.|++.||+++++. +.+++. +. +++.++ +++++|.|++++
T Consensus 204 --------~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~ 275 (484)
T TIGR01438 204 --------LDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAI 275 (484)
T ss_pred --------CcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEe
Confidence 89999998778899999999999999999999999984 666653 23 555555 379999999999
Q ss_pred CCCCch-h--cccCCCCCCC-CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh--
Q 013810 332 GVGPST-L--VKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-- 405 (436)
Q Consensus 332 G~~p~~-~--~~~~~l~~~~-~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-- 405 (436)
|++|+. + ++..++++++ +|+|.||+++| |+.|+|||+|||+.. .+.+++.|.+||+.+|+||+..
T Consensus 276 G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~-Ts~p~IyA~GDv~~~--------~~~l~~~A~~~g~~aa~~i~~~~~ 346 (484)
T TIGR01438 276 GRDACTRKLNLENVGVKINKKTGKIPADEEEQ-TNVPYIYAVGDILED--------KQELTPVAIQAGRLLAQRLFSGST 346 (484)
T ss_pred cCCcCCCcCCcccccceecCcCCeEecCCCcc-cCCCCEEEEEEecCC--------CccchHHHHHHHHHHHHHHhcCCC
Confidence 999993 3 5677888875 58999999999 999999999999963 1568899999999999999742
Q ss_pred ------cCCceeeecchhHHHHHHHh
Q 013810 406 ------ARNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 406 ------~~~~~~~~~~~~~~~~~~~~ 425 (436)
..++..++++.+..++++..
T Consensus 347 ~~~~~~~~p~~i~~~p~ia~vGlte~ 372 (484)
T TIGR01438 347 VICDYENVPTTVFTPLEYGACGLSEE 372 (484)
T ss_pred cccccccCCeEEeCCCceeeecCCHH
Confidence 24566777777777786653
No 30
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=6.3e-37 Score=303.01 Aligned_cols=300 Identities=21% Similarity=0.255 Sum_probs=216.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh--------------------hcCc------cccccc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--------------------CVGT------LEFRSV 116 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~--------------------~~~~------~~~~~~ 116 (436)
+||+||||||||.+||..+ .|.+|+|||++. ++......+. ..|. .++..+
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 7999999999999999774 599999999853 2211000000 0011 011111
Q ss_pred ccc----hhhc----chhh-hcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 117 AEP----IARI----QPAI-SREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 117 ~~~----~~~~----~~~~-~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
... ..++ .... .+..++.++.++...+ +.+.|.+. +|+ .+.||+||||||++|+.|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~V~v~---~g~--------~~~~d~lViATGs~p~~p~i 145 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPKTLRTG---DGE--------EITADQVVIAAGSRPVIPPV 145 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCCEEEEC---CCC--------EEEeCEEEEcCCCCCCCCCC
Confidence 111 1111 1111 3346788888877666 45667653 454 79999999999999999999
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
||.+.. .+.+.+++..+.. .| ++++|||+|++|+|+|..|++++
T Consensus 146 ~g~~~~--~~~~~~~~~~l~~----------~~----------~~vvIIGgG~iG~E~A~~l~~~G-------------- 189 (451)
T PRK07846 146 IADSGV--RYHTSDTIMRLPE----------LP----------ESLVIVGGGFIAAEFAHVFSALG-------------- 189 (451)
T ss_pred CCcCCc--cEEchHHHhhhhh----------cC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 986422 2233333333211 12 38999999999999999999876
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--e--EEEcCCcEEecceEEEecCCCCc-hh--
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILNDGTEVPYGLLVWSTGVGPS-TL-- 338 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~--v~~~~g~~i~~D~vi~a~G~~p~-~~-- 338 (436)
.+|+++++. .+++.+++++.+.+.+.+ +.+|+++.+. +.+++.+ . +.+.+|+++++|.|++|+|++|+ ++
T Consensus 190 ~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~ 268 (451)
T PRK07846 190 VRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLD 268 (451)
T ss_pred CeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccC
Confidence 899999995 577888999888877655 5679999984 8888642 3 55678889999999999999999 45
Q ss_pred cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh---------cCCc
Q 013810 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL---------ARNW 409 (436)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~---------~~~~ 409 (436)
++..+++++++|+|.||+++| |++|||||+|||+.. +.+++.|.+||+.+|+||... ..++
T Consensus 269 ~~~~gl~~~~~G~i~Vd~~~~-Ts~p~IyA~GD~~~~---------~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~ 338 (451)
T PRK07846 269 AAAAGVDVDEDGRVVVDEYQR-TSAEGVFALGDVSSP---------YQLKHVANHEARVVQHNLLHPDDLIASDHRFVPA 338 (451)
T ss_pred chhcCceECCCCcEeECCCcc-cCCCCEEEEeecCCC---------ccChhHHHHHHHHHHHHHcCCCCccccCCCCCCe
Confidence 357788888999999999999 999999999999986 678899999999999999742 1245
Q ss_pred eeeecchhHHHHHHHh
Q 013810 410 CWFFDVCSLTSILNRL 425 (436)
Q Consensus 410 ~~~~~~~~~~~~~~~~ 425 (436)
..+.++.+..++++..
T Consensus 339 ~if~~p~ia~vGlte~ 354 (451)
T PRK07846 339 AVFTHPQIASVGLTEN 354 (451)
T ss_pred EEECCCCcEeEeCCHH
Confidence 5555666666675553
No 31
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.1e-36 Score=304.64 Aligned_cols=307 Identities=19% Similarity=0.211 Sum_probs=218.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC--------cceec-------ch---hhh-----------hhcCc--
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFT-------PL---LAS-----------TCVGT-- 110 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~--------~~~~~-------~~---~~~-----------~~~~~-- 110 (436)
++||+||||||||++||.+|++.|.+|+|||+.+ .++.+ |. +.. ...|.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999631 12221 10 000 00010
Q ss_pred ---ccccccccchhhcc----h---hhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC
Q 013810 111 ---LEFRSVAEPIARIQ----P---AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (436)
Q Consensus 111 ---~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~ 180 (436)
.++..+........ . ...+..++.++.+++... +.+.+.+....++. .+.||+||||||+
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~--~~~~v~v~~~~~~~--------~i~~d~lIIATGs 154 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLK--DEHTVSYGDNSQEE--------TITAKYILIATGG 154 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEc--cCCEEEEeeCCCce--------EEECCEEEEecCC
Confidence 11111111111110 0 112235677777766544 34566654211122 7999999999999
Q ss_pred CCCCCC-CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHh
Q 013810 181 EASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (436)
Q Consensus 181 ~~~~~~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~ 259 (436)
.|+.|. +||.+...++ ..+...+ ...| ++++|||+|++|+|+|..|++++
T Consensus 155 ~p~~p~~i~G~~~~~~~---~~~~~~~----------~~~~----------~~vvIIGgG~iG~E~A~~l~~~G------ 205 (499)
T PTZ00052 155 RPSIPEDVPGAKEYSIT---SDDIFSL----------SKDP----------GKTLIVGASYIGLETAGFLNELG------ 205 (499)
T ss_pred CCCCCCCCCCccceeec---HHHHhhh----------hcCC----------CeEEEECCCHHHHHHHHHHHHcC------
Confidence 999884 8986543222 2222211 1123 38999999999999999999877
Q ss_pred hhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCC
Q 013810 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 260 ~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
.+|++++++.+++.+++++.+.+.+.|++.||+++.+. +.+++. + .+.+.+|+++++|.|++++|++
T Consensus 206 --------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 206 --------FDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred --------CcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 89999998777788999999999999999999999984 666653 2 3566788889999999999999
Q ss_pred Cc-hhc--ccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh------
Q 013810 335 PS-TLV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL------ 405 (436)
Q Consensus 335 p~-~~~--~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~------ 405 (436)
|+ +++ +.++++++++|++.+++. + |+.|+|||+|||+.. .+.+++.|++||+.+|+||...
T Consensus 278 pn~~~l~l~~~g~~~~~~G~ii~~~~-~-Ts~p~IyAiGDv~~~--------~~~l~~~A~~~g~~aa~ni~g~~~~~~~ 347 (499)
T PTZ00052 278 PDIKGLNLNAIGVHVNKSNKIIAPND-C-TNIPNIFAVGDVVEG--------RPELTPVAIKAGILLARRLFKQSNEFID 347 (499)
T ss_pred CCccccCchhcCcEECCCCCEeeCCC-c-CCCCCEEEEEEecCC--------CcccHHHHHHHHHHHHHHHhCCCCCcCc
Confidence 99 443 578888888998777766 7 999999999999963 1678999999999999999742
Q ss_pred --cCCceeeecchhHHHHHHHh
Q 013810 406 --ARNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 406 --~~~~~~~~~~~~~~~~~~~~ 425 (436)
..|+..+.++.+..++++..
T Consensus 348 ~~~~p~~ift~p~ia~vGlte~ 369 (499)
T PTZ00052 348 YTFIPTTIFTPIEYGACGYSSE 369 (499)
T ss_pred cccCCeEEecCCcceeecCCHH
Confidence 13566666888888886654
No 32
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.6e-36 Score=301.41 Aligned_cols=309 Identities=17% Similarity=0.165 Sum_probs=222.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---------------hh-----cCcccc---cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------TC-----VGTLEF---RSVA 117 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---------------~~-----~~~~~~---~~~~ 117 (436)
.++||+|||||+||++||..|++.|.+|+|||+++.++......+ .. .|.... .++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 358999999999999999999999999999998755433211110 00 010000 0000
Q ss_pred cc-------hhhc----chhhhc-CCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 118 EP-------IARI----QPAISR-EPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 118 ~~-------~~~~----~~~~~~-~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
.. ..++ .....+ ..++.++.++..-++. +.+.+.. .+|+ .+++.||+||||||++|+.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRL-HDGG------ERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecC--CEEEEEe-CCCc------eEEEEeCEEEEecCCCCCCC
Confidence 00 0000 011111 2378888887665553 4555543 2332 12689999999999999999
Q ss_pred CCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 186 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
++||.+...+.. . .+. +. ....| ++++|||+|++|+|+|..|.+++
T Consensus 166 ~i~G~~~~~~~~-~-~~~--l~--------~~~~~----------k~vvVIGgG~iG~E~A~~l~~~G------------ 211 (479)
T PRK14727 166 PIPGLMDTPYWT-S-TEA--LF--------SDELP----------ASLTVIGSSVVAAEIAQAYARLG------------ 211 (479)
T ss_pred CCCCcCccceec-c-hHH--hc--------cccCC----------CeEEEECCCHHHHHHHHHHHHcC------------
Confidence 999975322111 1 111 11 11123 48999999999999999999876
Q ss_pred CccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeEEE-cCCcEEecceEEEecCCCCch-h--
Q 013810 266 DYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKLIL-NDGTEVPYGLLVWSTGVGPST-L-- 338 (436)
Q Consensus 266 ~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v~~-~~g~~i~~D~vi~a~G~~p~~-~-- 338 (436)
.+|++++++.+++.+++++.+.+.+.|++.||+++.+. +++++ ++.+.+ .++.++++|.||+|+|+.|+. +
T Consensus 212 --~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~ 289 (479)
T PRK14727 212 --SRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLN 289 (479)
T ss_pred --CEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCC
Confidence 89999999878888899999999999999999999984 77775 333333 233469999999999999993 3
Q ss_pred cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh-------cCCcee
Q 013810 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-------ARNWCW 411 (436)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-------~~~~~~ 411 (436)
++..+++++++|+|.||+++| |+.|+|||+|||+.. +..++.|..||+.||.||+.. ..+++.
T Consensus 290 l~~~g~~~~~~G~i~Vd~~~~-Ts~~~IyA~GD~~~~---------~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~ 359 (479)
T PRK14727 290 LEAVGVTTDTSGAIVVNPAME-TSAPDIYAAGDCSDL---------PQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVI 359 (479)
T ss_pred chhhCceecCCCCEEECCCee-cCCCCEEEeeecCCc---------chhhhHHHHHHHHHHHHHcCCCcccccccCCcEE
Confidence 566788888899999999999 899999999999986 678899999999999999743 234677
Q ss_pred eecchhHHHHHHH
Q 013810 412 FFDVCSLTSILNR 424 (436)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (436)
+++..+..+|++.
T Consensus 360 ~~~p~ia~vGlte 372 (479)
T PRK14727 360 FTDPQVATVGLSE 372 (479)
T ss_pred EecCceeeeeCCH
Confidence 7888888888654
No 33
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=3.6e-37 Score=304.60 Aligned_cols=340 Identities=17% Similarity=0.133 Sum_probs=222.8
Q ss_pred Ccccccccccccc--ccccCCCCCc----cCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSI----IMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAG 74 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AG 74 (436)
+||...|.|+|.. .|+..|.+.. .. -....+.+.++..+..... .....+.+.....++|+||||||||
T Consensus 71 ~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~-~~v~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~V~IIG~G~aG 145 (449)
T TIGR01316 71 SLLPAICGRVCPQERQCEGQCTVGKMFKDVG-KPVSIGALERFVADWERQH----GIETEPEKAPSTHKKVAVIGAGPAG 145 (449)
T ss_pred CChhHHhccCCCCccchHhhCcCCCcCCCCC-CCccHHHHHHHHHhHHHhc----CCCcCCCCCCCCCCEEEEECcCHHH
Confidence 4788899999998 8999997654 22 2223444444443221100 0101111122356899999999999
Q ss_pred HHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEE
Q 013810 75 CRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCET 154 (436)
Q Consensus 75 l~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~ 154 (436)
|+||..|++.|++|+|||+++....... .+.+.. .+...+...........++.++.+.+.+ +.+.+.
T Consensus 146 l~aA~~l~~~G~~V~vie~~~~~GG~l~-----~gip~~-~~~~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~~- 213 (449)
T TIGR01316 146 LACASELAKAGHSVTVFEALHKPGGVVT-----YGIPEF-RLPKEIVVTEIKTLKKLGVTFRMNFLVG-----KTATLE- 213 (449)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCcEee-----ecCCCc-cCCHHHHHHHHHHHHhCCcEEEeCCccC-----CcCCHH-
Confidence 9999999999999999999875432211 011111 1111111111122344678887765431 222221
Q ss_pred ecCCcccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCc
Q 013810 155 VTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 232 (436)
Q Consensus 155 ~~~g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 232 (436)
+. ...||+||||||+ .|+.+++||.+ .++++..++.....+... ...|... .....+++
T Consensus 214 --~~---------~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~-------~~~~~~~-~~~~~gk~ 274 (449)
T TIGR01316 214 --EL---------FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKA-------YEFPHAD-TPVYAGKS 274 (449)
T ss_pred --HH---------HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhccc-------ccccccC-CcccCCCe
Confidence 11 3469999999998 69999999975 445544443322221110 0000000 00023469
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--CCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~--l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
|+|||+|++|+|+|..+.+++ .+|+++++... ++.. ....+.+++.||+++.+. +.++
T Consensus 275 VvVIGgG~~a~d~A~~l~~~G--------------~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i 335 (449)
T TIGR01316 275 VVVIGGGNTAVDSARTALRLG--------------AEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEI 335 (449)
T ss_pred EEEECCCHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEE
Confidence 999999999999999999877 78999998532 2221 223356778899999884 6666
Q ss_pred eC---C---eEEEc---------CC-----------cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCC
Q 013810 310 DS---Q---KLILN---------DG-----------TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPS 362 (436)
Q Consensus 310 ~~---~---~v~~~---------~g-----------~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~ 362 (436)
.. + .|++. +| +++++|.||+++|+.|+ .+++..+++++++|+|.||+++| |+
T Consensus 336 ~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~-Ts 414 (449)
T TIGR01316 336 IGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQR-TS 414 (449)
T ss_pred EEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCc-cC
Confidence 42 2 23332 22 26999999999999999 57777889999899999999999 89
Q ss_pred CCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 363 VQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 363 ~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|+|||+|||+.. +.++..|+.||+.||.+|..+
T Consensus 415 ~~~VfA~GD~~~g---------~~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 415 IPGVFAGGDIILG---------AATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CCCEEEecCCCCC---------cHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999975 678999999999999999764
No 34
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.4e-36 Score=286.79 Aligned_cols=281 Identities=20% Similarity=0.209 Sum_probs=200.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh---hcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---CVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
+||+|||||+|||+||..|++.|++|+|||+++. ......... ..+.... -....+........+..++.++..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~gv~~~~~~ 78 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEG-ISGPELMEKMKEQAVKFGAEIIYEE 78 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCC-CChHHHHHHHHHHHHHcCCeEEEEE
Confidence 5899999999999999999999999999998752 111000000 0110000 0001122222223445678887799
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccc---cccccChHHHHHHHHHHHHhccc
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
|++++..++.+.+.. .++. ++.||+||+|||+.|+.|++||.+.. ........+ ...
T Consensus 79 v~~v~~~~~~~~v~~-~~~~--------~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~-----~~~------ 138 (300)
T TIGR01292 79 VIKVDLSDRPFKVKT-GDGK--------EYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD-----GPF------ 138 (300)
T ss_pred EEEEEecCCeeEEEe-CCCC--------EEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC-----hhh------
Confidence 999998877665543 2444 79999999999999998999986421 111111100 000
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHh
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~ 296 (436)
..+++|+|||+|++|+|+|..|++.+ .+|+++++.+.+.. ...+.+.+++
T Consensus 139 -----------~~~~~v~ViG~G~~~~e~a~~l~~~~--------------~~V~~v~~~~~~~~-----~~~~~~~l~~ 188 (300)
T TIGR01292 139 -----------FKNKEVAVVGGGDSAIEEALYLTRIA--------------KKVTLVHRRDKFRA-----EKILLDRLRK 188 (300)
T ss_pred -----------cCCCEEEEECCChHHHHHHHHHHhhc--------------CEEEEEEeCcccCc-----CHHHHHHHHh
Confidence 22358999999999999999998765 89999998653321 2345556677
Q ss_pred c-CCEEEecc-eEEEeCCe----EEEc---CC--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCC
Q 013810 297 S-GVRLVRGI-VKDVDSQK----LILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (436)
Q Consensus 297 ~-gV~i~~~~-v~~i~~~~----v~~~---~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~ 364 (436)
. ||+++.+. +.+++.+. +++. ++ +++++|++++|+|++|+ .+++.+ ++++++|++.||++++ |++|
T Consensus 189 ~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~-t~~~ 266 (300)
T TIGR01292 189 NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMR-TSVP 266 (300)
T ss_pred CCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCc-cCCC
Confidence 6 99999884 88887542 4443 23 57999999999999998 577776 7778889999999999 8999
Q ss_pred CEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 365 DVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 365 ~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
||||+|||+... ++.+..|+.||+.||.+|..+
T Consensus 267 ~vya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 267 GVFAAGDVRDKG--------YRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CEEEeecccCcc--------hhhhhhhhhhHHHHHHHHHhh
Confidence 999999999831 678999999999999999754
No 35
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.6e-36 Score=299.32 Aligned_cols=306 Identities=20% Similarity=0.237 Sum_probs=211.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh---------------hc-------Ccc-c-ccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---------------CV-------GTL-E-FRSVA 117 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~---------------~~-------~~~-~-~~~~~ 117 (436)
++||+||||||||++||..+++.|.+|+|||++..++......+. .. |.. . ..++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 489999999999999999999999999999975544333111000 00 000 0 00000
Q ss_pred c----------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 118 E----------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 118 ~----------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
. .+..-...+.+..++.++.++. .++.. +.+.+.. .+++ +.++.||+||||||++|. ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~~-~~v~v~~-~~g~------~~~~~~d~lVIATGs~p~--~i 151 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDGV-GKVVVKA-EDGS------ETQLEAKDIVIATGSEPT--PL 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEccC-CEEEEEc-CCCc------eEEEEeCEEEEeCCCCCC--CC
Confidence 0 0001111123345688887764 44433 3444432 2332 126899999999999885 46
Q ss_pred CCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013810 188 HGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (436)
Q Consensus 188 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~ 266 (436)
||.. ++...+ +..++.. +...| ++++|||+|++|+|+|..+.+++
T Consensus 152 pg~~~~~~~~~-~~~~~~~----------~~~~~----------~~vvIIGgG~ig~E~A~~l~~~G------------- 197 (466)
T PRK06115 152 PGVTIDNQRII-DSTGALS----------LPEVP----------KHLVVIGAGVIGLELGSVWRRLG------------- 197 (466)
T ss_pred CCCCCCCCeEE-CHHHHhC----------CccCC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 6653 222111 1111111 11223 49999999999999999998876
Q ss_pred ccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeE--EEc---C--CcEEecceEEEecCCCC
Q 013810 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL--ILN---D--GTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 267 ~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v--~~~---~--g~~i~~D~vi~a~G~~p 335 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++. +++ .+. + ++++++|.|++++|++|
T Consensus 198 -~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 198 -AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred -CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 899999984 57888999999999999999999999994 888864 333 232 2 35799999999999999
Q ss_pred c-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc------
Q 013810 336 S-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA------ 406 (436)
Q Consensus 336 ~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~------ 406 (436)
+ .. ++..+++++++| +.||+++| |+.|+|||+|||++. +.+++.|.+||+.||+||+...
T Consensus 277 n~~~l~~~~~g~~~~~~G-~~vd~~~~-Ts~~~IyA~GD~~~~---------~~la~~A~~~g~~aa~~i~~~~~~~~~~ 345 (466)
T PRK06115 277 YTQGLGLETVGLETDKRG-MLANDHHR-TSVPGVWVIGDVTSG---------PMLAHKAEDEAVACIERIAGKAGEVNYG 345 (466)
T ss_pred ccccCCcccccceeCCCC-EEECCCee-cCCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 9 33 456677777777 67899999 999999999999986 6799999999999999998542
Q ss_pred -CCceeeecchhHHHHHHH
Q 013810 407 -RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~ 424 (436)
.|++.+.++.+..++++.
T Consensus 346 ~~p~~~~t~p~ia~vGlte 364 (466)
T PRK06115 346 LIPGVIYTRPEVATVGKTE 364 (466)
T ss_pred CCCeEEECCcccEEeeCCH
Confidence 345555566666666544
No 36
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-36 Score=302.56 Aligned_cols=303 Identities=20% Similarity=0.242 Sum_probs=212.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh---------------------cCcccccccccch
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC---------------------VGTLEFRSVAEPI 120 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~ 120 (436)
++||+||||||||++||.+|++.|.+|+|||++. ++......+.. .|.. ......+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~--~~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS--GEVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC--cCcccCH
Confidence 5899999999999999999999999999999862 11110000000 0000 0000000
Q ss_pred hh--------------cchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 121 AR--------------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 121 ~~--------------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.. -.....+..++..+.++..-+ +.+.+.+.. .+|+ .+++.||+||||||++|+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~--~~~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~~- 150 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFT--DANTLEVDL-NDGG------TETVTFDNAIIATGSSTRLL- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--CCCEEEEEe-cCCC------eeEEEcCEEEEeCCCCCCCC-
Confidence 00 000111123555555543333 345565543 2332 12689999999999998764
Q ss_pred CCCCc--cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 013810 187 IHGVK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (436)
Q Consensus 187 i~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~ 264 (436)
||.+ ..+++. .+.. .....| ++++|||+|++|+|+|..|++++
T Consensus 151 -pg~~~~~~v~~~---~~~~----------~~~~~~----------~~vvVIGgG~ig~E~A~~l~~~G----------- 195 (466)
T PRK07818 151 -PGTSLSENVVTY---EEQI----------LSRELP----------KSIVIAGAGAIGMEFAYVLKNYG----------- 195 (466)
T ss_pred -CCCCCCCcEEch---HHHh----------ccccCC----------CeEEEECCcHHHHHHHHHHHHcC-----------
Confidence 5543 223322 1111 011223 39999999999999999999876
Q ss_pred CCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--e--EEEc--CC--cEEecceEEEecCCC
Q 013810 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVG 334 (436)
Q Consensus 265 ~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~--v~~~--~g--~~i~~D~vi~a~G~~ 334 (436)
.+|+++++. .+++.+++++.+.+.+.|+++||+++.++ |++++.+ . +.+. +| +++++|.|++|+|++
T Consensus 196 ---~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 196 ---VDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred ---CeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcc
Confidence 899999984 67888899999999999999999999995 8888643 2 3443 56 369999999999999
Q ss_pred Cc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-----
Q 013810 335 PS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA----- 406 (436)
Q Consensus 335 p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~----- 406 (436)
|+ .+ ++..+++++++|+|.||+++| |+.|+|||+|||+.. +++++.|..||+.||.||....
T Consensus 273 pn~~~l~l~~~g~~~~~~g~i~vd~~~~-Ts~p~IyAiGD~~~~---------~~l~~~A~~~g~~aa~~i~g~~~~~~~ 342 (466)
T PRK07818 273 PRVEGYGLEKTGVALTDRGAIAIDDYMR-TNVPHIYAIGDVTAK---------LQLAHVAEAQGVVAAETIAGAETLELG 342 (466)
T ss_pred cCCCCCCchhcCcEECCCCcEeeCCCcc-cCCCCEEEEeecCCC---------cccHhHHHHHHHHHHHHHcCCCCCccC
Confidence 99 33 577888888889999999999 899999999999975 6799999999999999998532
Q ss_pred ----CCceeeecchhHHHHHHHh
Q 013810 407 ----RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 ----~~~~~~~~~~~~~~~~~~~ 425 (436)
.+.+.++++.+..+|++..
T Consensus 343 ~~~~~p~~~~~~p~~a~vGlte~ 365 (466)
T PRK07818 343 DYRMMPRATFCQPQVASFGLTEE 365 (466)
T ss_pred ccCCCCeEEECCCCeEEEeCCHH
Confidence 2345566777777775543
No 37
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-36 Score=279.25 Aligned_cols=283 Identities=18% Similarity=0.194 Sum_probs=211.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCe-EEEEcCCCcc---eecchhhhhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHM---VFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
.++||+|||||||||+||.++++.+.+ ++|+|+...- ...+.. ....|.... .....+.+....+....++.+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~v-enypg~~~~-~~g~~L~~~~~~~a~~~~~~~~ 79 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDV-ENYPGFPGG-ILGPELMEQMKEQAEKFGVEIV 79 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceee-cCCCCCccC-CchHHHHHHHHHHHhhcCeEEE
Confidence 458999999999999999999999999 6666654222 111111 112222211 1122334444445667888888
Q ss_pred EeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc---cccccccChHHHHHHHHHHHHh
Q 013810 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK---ENATFLREVHHAQEIRRKLLLN 213 (436)
Q Consensus 137 ~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~---~~~~~~~~~~~~~~~~~~~~~~ 213 (436)
...|..++.....+.+.+ .++ ++.+++||||||..++.|.+||.. ...++++..++. .
T Consensus 80 ~~~v~~v~~~~~~F~v~t-~~~---------~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~-------- 140 (305)
T COG0492 80 EDEVEKVELEGGPFKVKT-DKG---------TYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-F-------- 140 (305)
T ss_pred EEEEEEEeecCceEEEEE-CCC---------eEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-c--------
Confidence 889999987764444442 233 689999999999999999988754 223444444444 2
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHH
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~ 293 (436)
.++++|+|||+|++|+|.|.+|..++ ++|++++|.+.++. .+.+.+.
T Consensus 141 --------------~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra-----~~~~~~~ 187 (305)
T COG0492 141 --------------FKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA-----EEILVER 187 (305)
T ss_pred --------------ccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc-----CHHHHHH
Confidence 22348999999999999999999988 89999999766654 2344445
Q ss_pred HHhc-CCEEEecc-eEEEeC---CeEEEcCC----cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCC
Q 013810 294 LSKS-GVRLVRGI-VKDVDS---QKLILNDG----TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSV 363 (436)
Q Consensus 294 l~~~-gV~i~~~~-v~~i~~---~~v~~~~g----~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~ 363 (436)
+++. +|+++.+. +.++.+ ..|++.+. +++++|.+++++|..|+ .+++..++ ++++|+|.||+.++ ||+
T Consensus 188 l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~-Tsv 265 (305)
T COG0492 188 LKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEME-TSV 265 (305)
T ss_pred HHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCcc-cCC
Confidence 5555 89999994 999987 46777763 26899999999999999 68888777 88999999999999 999
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
|+|||+|||+..+ .+++..|..+|..||.++..+..
T Consensus 266 pGifAaGDv~~~~--------~rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 266 PGIFAAGDVADKN--------GRQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred CCEEEeEeeccCc--------ccEEeehhhhHHHHHHHHHHHhh
Confidence 9999999999863 44888999999999998877654
No 38
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.6e-36 Score=300.19 Aligned_cols=304 Identities=21% Similarity=0.296 Sum_probs=217.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec------c---hhh-----h-----hhcCcc--------ccccc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT------P---LLA-----S-----TCVGTL--------EFRSV 116 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~------~---~~~-----~-----~~~~~~--------~~~~~ 116 (436)
+|+||||||||++||..|++.|.+|+|||+++..+-. | ++. . ...|.. ++..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 7999999999999999999999999999987532100 1 000 0 001111 11111
Q ss_pred ccc-------hhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCC
Q 013810 117 AEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (436)
Q Consensus 117 ~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g 189 (436)
... +..-...+.+..++.++.+++..++. +.+.+.. .++. .++.||+||||||++|+.|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~--~~v~v~~-~~~~-------~~~~~d~lviATGs~p~~~p~~~ 151 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETD--HRVRVEY-GDKE-------EVVDAEQFIIAAGSEPTELPFAP 151 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccC--CEEEEee-CCCc-------EEEECCEEEEeCCCCCCCCCCCC
Confidence 000 00111123345688999998877764 4454432 2332 16899999999999998888887
Q ss_pred Ccc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013810 190 VKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (436)
Q Consensus 190 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~ 268 (436)
.+. .+++. .++.. +...| ++++|||+|++|+|+|..+.+++ .
T Consensus 152 ~~~~~v~~~---~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g--------------~ 194 (458)
T PRK06912 152 FDGKWIINS---KHAMS----------LPSIP----------SSLLIVGGGVIGCEFASIYSRLG--------------T 194 (458)
T ss_pred CCCCeEEcc---hHHhC----------ccccC----------CcEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 642 23322 22221 22223 38999999999999999998765 8
Q ss_pred EEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--eEEEc-CC--cEEecceEEEecCCCCc-hh--
Q 013810 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--KLILN-DG--TEVPYGLLVWSTGVGPS-TL-- 338 (436)
Q Consensus 269 ~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~v~~~-~g--~~i~~D~vi~a~G~~p~-~~-- 338 (436)
+|+++++. .+++.+++++.+.+.+.|++.||+++++. +.+++.+ .+.+. +| +++++|.|++|+|.+|+ +.
T Consensus 195 ~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~ 274 (458)
T PRK06912 195 KVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLN 274 (458)
T ss_pred eEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCC
Confidence 99999985 57788889999999999999999999995 8888643 34443 44 36999999999999999 33
Q ss_pred cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-------CCcee
Q 013810 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-------RNWCW 411 (436)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-------~~~~~ 411 (436)
++..+++.+++| |.||+++| |+.|||||+|||+.. ++++..|..||+.||.||.... .|.+.
T Consensus 275 l~~~gv~~~~~g-i~Vd~~~~-ts~~~VyA~GD~~~~---------~~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v 343 (458)
T PRK06912 275 LEKAGVQFSNKG-ISVNEHMQ-TNVPHIYACGDVIGG---------IQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCI 343 (458)
T ss_pred chhcCceecCCC-EEeCCCee-cCCCCEEEEeecCCC---------cccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE
Confidence 456677777777 99999999 899999999999975 7899999999999999997422 23455
Q ss_pred eecchhHHHHHHHh
Q 013810 412 FFDVCSLTSILNRL 425 (436)
Q Consensus 412 ~~~~~~~~~~~~~~ 425 (436)
++++.+..++++..
T Consensus 344 ~~~p~~a~vGlte~ 357 (458)
T PRK06912 344 YTSPEIASVGLTEK 357 (458)
T ss_pred ecCchhEEeeCCHH
Confidence 56777777776553
No 39
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=3.7e-36 Score=311.83 Aligned_cols=336 Identities=15% Similarity=0.153 Sum_probs=222.2
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
+||...|.++|...|+..|.+..... ......+.++..+...... .... ..+......++|+|||||||||+||.+
T Consensus 482 nPlP~icGrVCph~Ce~~C~R~~~d~-pV~I~~Lkr~a~d~~~~~~-~~~~--~~~~~~~tgKkVaIIGgGPAGLsAA~~ 557 (1019)
T PRK09853 482 NALPAITGHICDHQCQYNCTRLDYDE-AVNIRELKKVALEKGWDEY-KQRW--HKPAGIGSRKKVAVIGAGPAGLAAAYF 557 (1019)
T ss_pred CChhhHhhCcCCchhHHHhcCCCCCC-CeeccHHHHHHHhhHHHhc-cccc--CCCCccCCCCcEEEECCCHHHHHHHHH
Confidence 57888999999999999998876544 3344555555543321100 0010 011112356899999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|||+.+..+.... .+.+... +...............++.++.+....++. . +..
T Consensus 558 Lar~G~~VtV~Ek~~~~GG~lr-----~~IP~~R-lp~evL~~die~l~~~GVe~~~gt~Vdi~l-------e---~L~- 620 (1019)
T PRK09853 558 LARAGHPVTVFEREENAGGVVK-----NIIPQFR-IPAELIQHDIEFVKAHGVKFEFGCSPDLTV-------E---QLK- 620 (1019)
T ss_pred HHHcCCeEEEEecccccCccee-----eeccccc-ccHHHHHHHHHHHHHcCCEEEeCceeEEEh-------h---hhe-
Confidence 9999999999999876543211 0111111 111111111122334578887764322221 1 121
Q ss_pred cCCCCceeeeccEEEEeCCCC-CCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCC
Q 013810 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G 239 (436)
...||+||||||+. +..+++||.++++++..++ ...+.+. .. ....+++|+|||||
T Consensus 621 -------~~gYDaVILATGA~~~~~l~IpG~~~gV~saldf--L~~~k~~-------~~-------~~~~GKrVVVIGGG 677 (1019)
T PRK09853 621 -------NEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPF--LEEYKNK-------GT-------ALKLGKHVVVVGGG 677 (1019)
T ss_pred -------eccCCEEEECcCCCCCCCCCCCCccCCceehHHH--HHHHhhh-------cc-------cccCCCEEEEECCC
Confidence 45699999999997 4556788865444432221 1111110 00 00234699999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC--CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC-CeE-
Q 013810 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-QKL- 314 (436)
Q Consensus 240 ~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-~~v- 314 (436)
++|+|+|..+.+.+ ...+|+++++. ..++..++++. +.+ +.||+++... +.+++. +.+
T Consensus 678 nVAmD~Ar~a~Rlg------------GakeVTLVyRr~~~~MPA~~eEle----~Al-eeGVe~~~~~~p~~I~~dG~l~ 740 (1019)
T PRK09853 678 NTAMDAARAALRVP------------GVEKVTVVYRRTKQEMPAWREEYE----EAL-EDGVEFKELLNPESFDADGTLT 740 (1019)
T ss_pred hHHHHHHHHHHhcC------------CCceEEEEEccCcccccccHHHHH----HHH-HcCCEEEeCCceEEEEcCCcEE
Confidence 99999999887653 11589999985 34555544433 333 4699999873 666642 212
Q ss_pred ------------------EEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccc
Q 013810 315 ------------------ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 315 ------------------~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~ 375 (436)
...++.++++|.||+|+|..|+ +++...|++++++|++.||++++ |+.|+|||+|||+..
T Consensus 741 ~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlq-Ts~pgVFAaGD~a~G 819 (1019)
T PRK09853 741 CRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGE-TSLTNVYMIGDVQRG 819 (1019)
T ss_pred EEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcc-cCCCCEEEEeccccC
Confidence 1123457999999999999999 67888899888899999999999 899999999999976
Q ss_pred ccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 376 LESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 376 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+.++..|+.||+.||++|.....
T Consensus 820 ---------p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 820 ---------PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred ---------chHHHHHHHHHHHHHHHHhhhcC
Confidence 77899999999999999986543
No 40
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.2e-36 Score=300.87 Aligned_cols=308 Identities=24% Similarity=0.290 Sum_probs=215.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh--------------------hcCc------cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--------------------CVGT------LEFR 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~--------------------~~~~------~~~~ 114 (436)
..+||+||||||||++||.+|++.|.+|+|||+. .++.+....+. ..|. .++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 3589999999999999999999999999999986 33222110000 0000 0110
Q ss_pred cccc-------chhhcchhhhcCCCcEEEEeEeEeEeCC-----CCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCC
Q 013810 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTD-----NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (436)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~-----~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~ 182 (436)
.+.. .+......+.+..++.++.++++.++.. .+.+.+.. .+|+ ..++.||+||||||++|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~-~~g~------~~~~~~d~lViATGs~p 154 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVET-ETGE------NEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEe-CCCc------eEEEEcCEEEEeCCCCC
Confidence 1000 0111111234456899999999988876 33555543 2331 11789999999999998
Q ss_pred CCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 013810 183 STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (436)
Q Consensus 183 ~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~ 261 (436)
..++....+ ..++ +..++.. +...| ++++|||+|++|+|+|..|++++
T Consensus 155 ~~~p~~~~~~~~~~---~~~~~~~----------~~~~~----------~~vvIIGgG~~G~E~A~~l~~~g-------- 203 (472)
T PRK05976 155 VELPGLPFDGEYVI---SSDEALS----------LETLP----------KSLVIVGGGVIGLEWASMLADFG-------- 203 (472)
T ss_pred CCCCCCCCCCceEE---cchHhhC----------ccccC----------CEEEEECCCHHHHHHHHHHHHcC--------
Confidence 754322221 1122 2222221 11223 39999999999999999999876
Q ss_pred cCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe---CCeE---EEcCC--cEEecceEEEec
Q 013810 262 SHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD---SQKL---ILNDG--TEVPYGLLVWST 331 (436)
Q Consensus 262 ~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~---~~~v---~~~~g--~~i~~D~vi~a~ 331 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++ .+++ .+.+| +++++|.+++|+
T Consensus 204 ------~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 204 ------VEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred ------CeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 899999985 57788899999999999999999999995 88886 3433 23466 369999999999
Q ss_pred CCCCch-h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc--
Q 013810 332 GVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-- 406 (436)
Q Consensus 332 G~~p~~-~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-- 406 (436)
|.+|+. . ++..++.. .+|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.||.||....
T Consensus 278 G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~-ts~~~IyAiGD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~ 346 (472)
T PRK05976 278 GRRPNTEGIGLENTDIDV-EGGFIQIDDFCQ-TKERHIYAIGDVIGE---------PQLAHVAMAEGEMAAEHIAGKKPR 346 (472)
T ss_pred CCccCCCCCCchhcCcee-cCCEEEECCCcc-cCCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHcCCCCC
Confidence 999993 2 34445544 468999999999 899999999999975 6789999999999999997432
Q ss_pred ------CCceeeecchhHHHHHHH
Q 013810 407 ------RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 407 ------~~~~~~~~~~~~~~~~~~ 424 (436)
.+.+.++++.+..+|++.
T Consensus 347 ~~~~~~~p~~~~~~p~~a~vG~te 370 (472)
T PRK05976 347 PFDYAAIPACCYTDPEVASVGLTE 370 (472)
T ss_pred CCCCCCCCEEEECcCceEEEeCCH
Confidence 344556677666665443
No 41
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=3.5e-36 Score=286.30 Aligned_cols=288 Identities=19% Similarity=0.173 Sum_probs=202.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc---ceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---MVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
..+||+|||||||||+||.+|++.|+++++||.... +.+.+...... +....... ..+.+.........+..+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 82 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP-GDPNDLTG-PLLMERMHEHATKFETEIIF 82 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCC-CCCCCCCH-HHHHHHHHHHHHHCCCEEEe
Confidence 458999999999999999999999999999985422 11111111111 11100000 11122222223334556666
Q ss_pred eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHHHHhc
Q 013810 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
++|+.++...+.+.+.. +.. .+.||+||||||+.|+.|++||.+. ..++.....+...
T Consensus 83 ~~v~~v~~~~~~~~v~~--~~~--------~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~--------- 143 (321)
T PRK10262 83 DHINKVDLQNRPFRLTG--DSG--------EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFF--------- 143 (321)
T ss_pred eEEEEEEecCCeEEEEe--cCC--------EEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHH---------
Confidence 77888888777776643 222 6899999999999999999998642 1122111111110
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l 294 (436)
..+++|+|||+|++|+|+|..|++.+ ++|+++++.+.+. .++.+.+.+.+.|
T Consensus 144 -------------~~g~~vvVvGgG~~g~e~A~~l~~~~--------------~~Vtlv~~~~~~~-~~~~~~~~~~~~l 195 (321)
T PRK10262 144 -------------YRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKV 195 (321)
T ss_pred -------------cCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEECCccC-CCHHHHHHHHhhc
Confidence 22359999999999999999999876 8999999965332 3466778888899
Q ss_pred HhcCCEEEecc-eEEEeCC-----eEEEcCC------cEEecceEEEecCCCCch-hcccCCCCCCCCCcEEeCC-----
Q 013810 295 SKSGVRLVRGI-VKDVDSQ-----KLILNDG------TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDE----- 356 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~~-----~v~~~~g------~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~----- 356 (436)
++.||+++.+. +++++++ .|++.++ +++++|.|++++|++|+. ++. .++.++ +|+|.||+
T Consensus 196 ~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~-~~l~~~-~g~i~vd~~~~~~ 273 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELE-NGYIKVQSGIHGN 273 (321)
T ss_pred cCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhh-cccccc-CCEEEECCCCccc
Confidence 99999999984 8888764 3555432 369999999999999994 444 356554 58999997
Q ss_pred CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
+++ |++|+|||+|||++.+ .++...|+.+|..||..|..+..+
T Consensus 274 ~~~-t~~~~VyA~GD~~~~~--------~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 274 ATQ-TSIPGVFAAGDVMDHI--------YRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred ccc-cCCCCEEECeeccCCC--------cceEEEEehhHHHHHHHHHHHHHh
Confidence 567 9999999999999742 456677999999999999876543
No 42
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=7.4e-36 Score=295.13 Aligned_cols=310 Identities=19% Similarity=0.276 Sum_probs=239.2
Q ss_pred HHHHhcccC--CCeEEEEcCCCcceecch-hhhhhcCcccccccccchhhcchhhhcCCCcEEE-EeEeEeEeCCCCEEE
Q 013810 76 RLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHCAGIDTDNHVVH 151 (436)
Q Consensus 76 ~aA~~L~~~--g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~id~~~~~v~ 151 (436)
+||.+|++. +++|+|||+++++.|.|. ++....+...... ..+......+....++.++ .++|+.+|++.+.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRN--KLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHH--HcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 478888875 478999999999988773 5544444322111 0011111223345678875 469999999999888
Q ss_pred EEEecCCcccCCCCceeee--ccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhc
Q 013810 152 CETVTDELRTLEPWKFKIS--YDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228 (436)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~--~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 228 (436)
+....++. .+. ||+||||||++|+.|++||.+ +.++...++.++..++..+.. .
T Consensus 79 ~~~~~~~~--------~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~---------------~ 135 (427)
T TIGR03385 79 VRNNKTNE--------TYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK---------------N 135 (427)
T ss_pred EEECCCCC--------EEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------c
Confidence 76432233 566 999999999999999999986 667888888888877776521 2
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-C-CCcccHHHHHHHHHHHHhcCCEEEecc-
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-LSSFDDRLRHYATTQLSKSGVRLVRGI- 305 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~-l~~~~~~~~~~~~~~l~~~gV~i~~~~- 305 (436)
.+++|+|||+|++|+|+|..|++.+ .+|+++++.+ + .+.+++++.+.+.+.|++.||+++.+.
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~ 201 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--------------KNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEE 201 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCE
Confidence 2358999999999999999998765 8999999864 4 367888899999999999999999984
Q ss_pred eEEEeCCe--EEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccC-CCC
Q 013810 306 VKDVDSQK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-TGK 381 (436)
Q Consensus 306 v~~i~~~~--v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~-~~~ 381 (436)
+.+++.+. +.+.+|+++++|.+++|+|.+|+ ++++.++++++++|+|.||+++| |+.|+|||+|||+..+.. .++
T Consensus 202 v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~-t~~~~Vya~GD~~~~~~~~~~~ 280 (427)
T TIGR03385 202 VDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQ-TSVPNIYAAGDVAESHNIITKK 280 (427)
T ss_pred EEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcE-eCCCCEEEeeeeEEeeeccCCC
Confidence 88887643 36778889999999999999999 68888999999899999999999 899999999999987653 444
Q ss_pred ccCCccHHHHHHHHHHHHhhhhhhc--------CCceeeecchhHHHHHHHh
Q 013810 382 TVLPALAQVSYEQLHLFQKPSFLLA--------RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 382 ~~~~~~~~~A~~~g~~aa~~i~~~~--------~~~~~~~~~~~~~~~~~~~ 425 (436)
+..++++..|.+||+.||+||.... .+.+.+++..+..+|++..
T Consensus 281 ~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~ 332 (427)
T TIGR03385 281 PAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTEN 332 (427)
T ss_pred ceeeechHHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHH
Confidence 4446789999999999999997532 2345567888888886543
No 43
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-36 Score=300.34 Aligned_cols=344 Identities=18% Similarity=0.135 Sum_probs=225.4
Q ss_pred Ccccccccccccc--ccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||...|.|+|.. .|+..|.+.....+. ....+.++..+..... ... ...+.....++|+|||||||||+||
T Consensus 83 np~p~~~grvC~~~~~Ce~~C~r~~~~~~v-~I~~l~r~~~~~~~~~----~~~-~~~~~~~~~~~V~IIG~GpAGl~aA 156 (464)
T PRK12831 83 NALPAVCGRVCPQESQCEGKCVLGIKGEPV-AIGKLERFVADWAREN----GID-LSETEEKKGKKVAVIGSGPAGLTCA 156 (464)
T ss_pred CCchhhhhccCCCCCChHHHhcCCCCCCCe-ehhHHHHHHHHHHHHc----CCC-CCCCcCCCCCEEEEECcCHHHHHHH
Confidence 4788899999997 899999887654333 3444555554322111 111 1112234568999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
.+|++.|++|+|||+.+..+.... .+.+.+......+...........++.++.+.... +.+.+. +.
T Consensus 157 ~~l~~~G~~V~v~e~~~~~GG~l~-----~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~-----~~v~~~---~~ 223 (464)
T PRK12831 157 GDLAKMGYDVTIFEALHEPGGVLV-----YGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVG-----KTVTID---EL 223 (464)
T ss_pred HHHHhCCCeEEEEecCCCCCCeee-----ecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC-----CcCCHH---HH
Confidence 999999999999998765432210 11111110011122111222344578877765332 112211 11
Q ss_pred cccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
. ..+.||+||||||+ .|+.+++||.+ .++++..++.....+.... . +... .....+++|+||
T Consensus 224 ~-------~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~----~----~~~~-~~~~~gk~VvVI 287 (464)
T PRK12831 224 L-------EEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAY----K----PEYD-TPIKVGKKVAVV 287 (464)
T ss_pred H-------hccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccc----c----cccc-CcccCCCeEEEE
Confidence 1 04579999999999 69999999976 5566554444332211100 0 0000 001234699999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-- 311 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-- 311 (436)
|+|++|+|+|..+.+++ .+|+++++.. .++....++ +.+.+.||+++++. +.++..
T Consensus 288 GgG~va~d~A~~l~r~G--------------a~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~ 348 (464)
T PRK12831 288 GGGNVAMDAARTALRLG--------------AEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDE 348 (464)
T ss_pred CCcHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecC
Confidence 99999999999999887 7899999843 233322221 23567899999884 666632
Q ss_pred -Ce---EEEc------------------CCc--EEecceEEEecCCCCc-hhccc-CCCCCCCCCcEEeCCC-CCCCCCC
Q 013810 312 -QK---LILN------------------DGT--EVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDEW-LRVPSVQ 364 (436)
Q Consensus 312 -~~---v~~~------------------~g~--~i~~D~vi~a~G~~p~-~~~~~-~~l~~~~~G~i~vd~~-~~~t~~~ 364 (436)
+. |++. +|+ ++++|.||+++|+.|+ .++.. .+++++++|+|.||++ ++ |+.|
T Consensus 349 ~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~-Ts~p 427 (464)
T PRK12831 349 NGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGL-TSKE 427 (464)
T ss_pred CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCc-cCCC
Confidence 12 2221 222 5999999999999999 45555 6888888899999998 78 9999
Q ss_pred CEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 365 DVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 365 ~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
+|||+|||+.. +.++..|+.+|+.||.+|..+..+
T Consensus 428 gVfAaGD~~~g---------~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 428 GVFAGGDAVTG---------AATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CEEEeCCCCCC---------chHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999986 678999999999999999877643
No 44
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=276.87 Aligned_cols=294 Identities=22% Similarity=0.360 Sum_probs=241.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCcceec-chhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
.+.++|||||++|..|+.++++.|+ +++|+-++.+++|. |.++....- ....++...+.+++..++.++.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~------~~~~~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLT------VGEGLAKRTPEFYKEKGIELILG 147 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceee------ccccccccChhhHhhcCceEEEc
Confidence 5789999999999999999999886 48899888887775 344333211 11233334445677888988775
Q ss_pred -EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccc
Q 013810 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
.|+++|...+++.+. +|+ .+.|++|+||||+.++.+++||.+ +++.++++++++..+...+
T Consensus 148 t~v~~~D~~~K~l~~~---~Ge--------~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~------ 210 (478)
T KOG1336|consen 148 TSVVKADLASKTLVLG---NGE--------TLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAI------ 210 (478)
T ss_pred ceeEEeeccccEEEeC---CCc--------eeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHh------
Confidence 999999999999875 676 899999999999999999999998 7888999999998887765
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-cccHHHHHHHHHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQL 294 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~-~~~~~~~~~~~~~l 294 (436)
....+|+++|+|.+|+|+|.+|.... .+||++++.+ .++ -+.+.+.+.+++++
T Consensus 211 -----------~~~~~vV~vG~G~ig~Evaa~l~~~~--------------~~VT~V~~e~~~~~~lf~~~i~~~~~~y~ 265 (478)
T KOG1336|consen 211 -----------QLGGKVVCVGGGFIGMEVAAALVSKA--------------KSVTVVFPEPWLLPRLFGPSIGQFYEDYY 265 (478)
T ss_pred -----------ccCceEEEECchHHHHHHHHHHHhcC--------------ceEEEEccCccchhhhhhHHHHHHHHHHH
Confidence 23458999999999999999998654 9999999953 444 67899999999999
Q ss_pred HhcCCEEEecc-eEEEeCC------eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCE
Q 013810 295 SKSGVRLVRGI-VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~~------~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~V 366 (436)
+++||+++.++ +.+++.+ .|.+.||++++||+|++.+|.+|+ .+++. +..+++.|+|.||+++| |++|||
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~-t~~~~V 343 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQ-TSVPNV 343 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-cceecccCCEeehhcee-eccCCc
Confidence 99999999996 7777653 377899999999999999999999 57666 77778999999999999 899999
Q ss_pred EEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 367 FAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 367 ya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
||+||++..+.+ .+.......+..|..+|+.+...|...
T Consensus 344 yAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~ 383 (478)
T KOG1336|consen 344 YAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMA 383 (478)
T ss_pred ccccceeecccccccccccchHHHHHHHHHHhhhhhhhcc
Confidence 999999998774 333333678889999999877776543
No 45
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.8e-36 Score=297.14 Aligned_cols=306 Identities=20% Similarity=0.234 Sum_probs=215.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcC------CCcceec-------ch---hh-----hh------hcCccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP------RNHMVFT-------PL---LA-----ST------CVGTLEFR 114 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~------~~~~~~~-------~~---~~-----~~------~~~~~~~~ 114 (436)
.+||+||||||||++||.++++.|.+|+|||+ ...+... |. +. .. ..|.. ..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~-~~ 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH-VD 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc-CC
Confidence 58999999999999999999999999999998 1222111 10 00 00 00000 00
Q ss_pred c----ccc----------chhhcchhhhcCCCcEEEEeEeEeEeCC--CCEEEEEEecCCcccCCCCceeeeccEEEEeC
Q 013810 115 S----VAE----------PIARIQPAISREPGSYFFLSHCAGIDTD--NHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (436)
Q Consensus 115 ~----~~~----------~~~~~~~~~~~~~~~~~~~~~v~~id~~--~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAt 178 (436)
. +.. .+......+.+..++.++.+++..++.. ...+.+.. .++. +++||+|||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~-~~~~--------~~~~d~lViAT 153 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTG-EDET--------VITAKHVIIAT 153 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEec-CCCe--------EEEeCEEEEeC
Confidence 0 000 0011112234456889999888777643 34454431 1233 79999999999
Q ss_pred CCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHH
Q 013810 179 GAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (436)
Q Consensus 179 G~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~ 257 (436)
|++|+.++..+.+ ..++.. .++.. +...| ++|+|||+|++|+|+|..|.+++
T Consensus 154 Gs~p~~~p~~~~~~~~~~~~---~~~~~----------~~~~~----------~~vvVvGgG~~g~E~A~~l~~~g---- 206 (475)
T PRK06327 154 GSEPRHLPGVPFDNKIILDN---TGALN----------FTEVP----------KKLAVIGAGVIGLELGSVWRRLG---- 206 (475)
T ss_pred CCCCCCCCCCCCCCceEECc---HHHhc----------ccccC----------CeEEEECCCHHHHHHHHHHHHcC----
Confidence 9999754322222 222211 11111 11123 49999999999999999998776
Q ss_pred HhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEeCC--e--EEEcC--C--cEEecceE
Q 013810 258 RQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILND--G--TEVPYGLL 327 (436)
Q Consensus 258 ~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~~--~--v~~~~--g--~~i~~D~v 327 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+ +|.+++.+ . +.+.+ | +++++|.|
T Consensus 207 ----------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~v 276 (475)
T PRK06327 207 ----------AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKL 276 (475)
T ss_pred ----------CeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEE
Confidence 899999985 5677788999999999999999999998 48888642 3 34444 3 46999999
Q ss_pred EEecCCCCc-h--hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 328 VWSTGVGPS-T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 328 i~a~G~~p~-~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
++++|++|+ + .++.++++++++|+|.||+++| |+.|+|||+|||+.. +.++..|..||+.||.||..
T Consensus 277 l~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~-Ts~~~VyA~GD~~~~---------~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 277 IVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCR-TNVPNVYAIGDVVRG---------PMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred EEccCCccCCCCCCcHhhCceeCCCCeEeECCCCc-cCCCCEEEEEeccCC---------cchHHHHHHHHHHHHHHHcC
Confidence 999999999 4 3466788889999999999999 899999999999985 67899999999999999985
Q ss_pred hc-------CCceeeecchhHHHHHHH
Q 013810 405 LA-------RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 405 ~~-------~~~~~~~~~~~~~~~~~~ 424 (436)
.. .++..++++.+..+|++.
T Consensus 347 ~~~~~~~~~~p~~~~~~pe~a~vGlte 373 (475)
T PRK06327 347 QKGHIDYNTIPWVIYTSPEIAWVGKTE 373 (475)
T ss_pred CCCCCCCCCCCeEEeCCcceEEEeCCH
Confidence 33 345555677666666544
No 46
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.8e-36 Score=300.06 Aligned_cols=303 Identities=24% Similarity=0.283 Sum_probs=212.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----------h-----hh---h--cC------ccccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----------A-----ST---C--VG------TLEFR 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----------~-----~~---~--~~------~~~~~ 114 (436)
.++||+||||||||++||.+|++.|.+|+|||++ .++..... . .. . .| ..+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 4589999999999999999999999999999984 33221110 0 00 0 00 00111
Q ss_pred ccccchhhcc--------hhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 115 SVAEPIARIQ--------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 115 ~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.+........ .......++.++.+++..++. +.+.+ ++. ++.||+||||||+. .|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v----~~~--------~~~~d~lIiATGs~--~p~ 144 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEV----NGE--------RIEAKNIVIATGSR--VPP 144 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEE----CcE--------EEEeCEEEEeCCCC--CCC
Confidence 1111111110 111234567777776665543 34443 343 79999999999999 556
Q ss_pred CCCCcc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 187 i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
+||... ......+..+...+ ...| ++++|||+|++|+|+|..|.+++
T Consensus 145 ipg~~~~~~~~~~~~~~~~~~----------~~~~----------k~v~VIGgG~~g~E~A~~l~~~g------------ 192 (460)
T PRK06292 145 IPGVWLILGDRLLTSDDAFEL----------DKLP----------KSLAVIGGGVIGLELGQALSRLG------------ 192 (460)
T ss_pred CCCCcccCCCcEECchHHhCc----------cccC----------CeEEEECCCHHHHHHHHHHHHcC------------
Confidence 777531 11111122222211 1122 49999999999999999999876
Q ss_pred CccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC---eEEE--cCC--cEEecceEEEecCCCCc
Q 013810 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KLIL--NDG--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 266 ~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~---~v~~--~~g--~~i~~D~vi~a~G~~p~ 336 (436)
.+|+++++. .+++.+++++.+.+.+.|++. |+++.+. +.+++.+ .+++ .++ +++++|.|++++|.+|+
T Consensus 193 --~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 193 --VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred --CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 899999995 577888999999999999999 9999984 8888642 3553 233 56999999999999999
Q ss_pred -h--hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh-c------
Q 013810 337 -T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-A------ 406 (436)
Q Consensus 337 -~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-~------ 406 (436)
+ .++..+++++++|+|.||+++| |+.|+|||+|||++. ++++..|..||+.||.||... .
T Consensus 270 ~~~l~l~~~g~~~~~~g~i~vd~~~~-ts~~~IyA~GD~~~~---------~~~~~~A~~qg~~aa~~i~~~~~~~~~~~ 339 (460)
T PRK06292 270 TDGLGLENTGIELDERGRPVVDEHTQ-TSVPGIYAAGDVNGK---------PPLLHEAADEGRIAAENAAGDVAGGVRYH 339 (460)
T ss_pred CCCCCcHhhCCEecCCCcEeECCCcc-cCCCCEEEEEecCCC---------ccchhHHHHHHHHHHHHhcCCCCCCcCCC
Confidence 4 3567888888899999999999 899999999999985 678999999999999999863 1
Q ss_pred -CCceeeecchhHHHHHHHh
Q 013810 407 -RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~~ 425 (436)
.|...+.+..+..+|++..
T Consensus 340 ~~p~~~~~~~~~a~vG~te~ 359 (460)
T PRK06292 340 PIPSVVFTDPQIASVGLTEE 359 (460)
T ss_pred CCCeEEECCCccEEeECCHH
Confidence 2234444666666665543
No 47
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.5e-35 Score=295.92 Aligned_cols=301 Identities=21% Similarity=0.248 Sum_probs=216.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---------------hh-----cCcccccccccchh-
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------TC-----VGTLEFRSVAEPIA- 121 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~- 121 (436)
+||+||||||||++||.+|++.|.+|+|||+ +.++......+ .. .+. ..........
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGI-EVENVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCC-CCCCCcCCHHH
Confidence 7999999999999999999999999999998 44432210000 00 000 0000000000
Q ss_pred -------------hcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCC
Q 013810 122 -------------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (436)
Q Consensus 122 -------------~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~ 188 (436)
.....+.+..++.++.+++..++. +.+.+... ++. .++.||+||||||++|+.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~-~g~-------~~~~~d~lVlAtG~~p~~~~~~ 149 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDP--GTVLVTGE-NGE-------ETLTAKNIIIATGSRPRSLPGP 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEEecC-CCc-------EEEEeCEEEEcCCCCCCCCCCC
Confidence 001122344678888888876664 44544421 221 1789999999999999988876
Q ss_pred -CCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 189 -GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 189 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
+.+.. .+.+..+...+ ...| ++++|||+|.+|+|+|..|.+.+
T Consensus 150 ~~~~~~--~~~~~~~~~~~----------~~~~----------~~vvViGgG~~g~e~A~~l~~~g-------------- 193 (461)
T TIGR01350 150 FDFDGE--VVITSTGALNL----------KEVP----------ESLVIIGGGVIGIEFASIFASLG-------------- 193 (461)
T ss_pred CCCCCc--eEEcchHHhcc----------ccCC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 43221 12222332221 1122 48999999999999999998766
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEcCC--cEEecceEEEecCCCCc-h-
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILNDG--TEVPYGLLVWSTGVGPS-T- 337 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~~g--~~i~~D~vi~a~G~~p~-~- 337 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. +.+++ ++.+ .+.+| +++++|.+++|+|.+|+ .
T Consensus 194 ~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~ 273 (461)
T TIGR01350 194 SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEG 273 (461)
T ss_pred CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence 899999995 57788889999999999999999999994 88775 3444 34466 47999999999999999 4
Q ss_pred -hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc--------CC
Q 013810 338 -LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA--------RN 408 (436)
Q Consensus 338 -~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~--------~~ 408 (436)
+++..+++++++|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.+|+||.... .+
T Consensus 274 l~~~~~gl~~~~~g~i~vd~~l~-t~~~~IyaiGD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 343 (461)
T TIGR01350 274 LGLENLGVELDERGRIVVDEYMR-TNVPGIYAIGDVIGG---------PMLAHVASHEGIVAAENIAGKEPAPIDYDAVP 343 (461)
T ss_pred CCcHhhCceECCCCcEeeCCCcc-cCCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 4678888889899999999999 899999999999985 6789999999999999997532 34
Q ss_pred ceeeecchhHHHH
Q 013810 409 WCWFFDVCSLTSI 421 (436)
Q Consensus 409 ~~~~~~~~~~~~~ 421 (436)
.+.+++..+..++
T Consensus 344 ~~~~~~~~~a~vG 356 (461)
T TIGR01350 344 SCIYTDPEVASVG 356 (461)
T ss_pred eEEecCCceEEEe
Confidence 5555666665555
No 48
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=4e-35 Score=290.47 Aligned_cols=301 Identities=21% Similarity=0.265 Sum_probs=212.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec-------ch---h-----hhhh-----cCc------ccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------PL---L-----ASTC-----VGT------LEFRS 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~-------~~---~-----~~~~-----~~~------~~~~~ 115 (436)
++||+|||+||||..||..+ .|.+|+|||++. ++.. |. + .... .|. .++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 48999999999999987554 699999999853 2211 10 0 0000 010 01111
Q ss_pred cccchh-----hcc---hhh-h--cCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 116 VAEPIA-----RIQ---PAI-S--REPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 116 ~~~~~~-----~~~---~~~-~--~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+..... .+. ... . +..+++++.+...-. +.+.+.+. +|. +++||+||||||++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~V~~~---~g~--------~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRTLRTG---DGE--------EITGDQIVIAAGSRPYI 145 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe--cCCEEEEC---CCc--------EEEeCEEEEEECCCCCC
Confidence 111110 000 011 1 225788887765444 34556552 454 78999999999999988
Q ss_pred CCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 013810 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (436)
Q Consensus 185 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~ 264 (436)
|++.+.. . ..+.+.+++.++.. .| ++++|||+|++|+|+|..|++++
T Consensus 146 p~~~~~~-~-~~~~~~~~~~~l~~----------~~----------k~vvVIGgG~ig~E~A~~l~~~G----------- 192 (452)
T TIGR03452 146 PPAIADS-G-VRYHTNEDIMRLPE----------LP----------ESLVIVGGGYIAAEFAHVFSALG----------- 192 (452)
T ss_pred CCCCCCC-C-CEEEcHHHHHhhhh----------cC----------CcEEEECCCHHHHHHHHHHHhCC-----------
Confidence 8754432 2 23345555554332 12 38999999999999999998876
Q ss_pred CCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc-h
Q 013810 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-T 337 (436)
Q Consensus 265 ~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~-~ 337 (436)
.+|+++++. .+++.+++++.+.+.+.+ +.+|+++.+. |.+++. +. +.+.+|+++++|.|++++|++|+ .
T Consensus 193 ---~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 193 ---TRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred ---CcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 899999995 567788899888887755 4689999884 888863 33 45567888999999999999999 4
Q ss_pred h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc---------
Q 013810 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA--------- 406 (436)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~--------- 406 (436)
+ ++..|++++++|+|.||+++| |+.|+|||+|||+.. +++++.|.+||+.+|+||....
T Consensus 269 ~l~~~~~gl~~~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~---------~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~ 338 (452)
T TIGR03452 269 LLDAEAAGVEVDEDGRIKVDEYGR-TSARGVWALGDVSSP---------YQLKHVANAEARVVKHNLLHPNDLRKMPHDF 338 (452)
T ss_pred CcCchhcCeeECCCCcEeeCCCcc-cCCCCEEEeecccCc---------ccChhHHHHHHHHHHHHhcCCCCcccCCCCC
Confidence 4 456788888899999999999 999999999999985 6789999999999999997432
Q ss_pred CCceeeecchhHHHHHHHh
Q 013810 407 RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~ 425 (436)
.|++.+++..+..+|++..
T Consensus 339 ~p~~i~t~p~ia~vGlte~ 357 (452)
T TIGR03452 339 VPSAVFTHPQIATVGLTEQ 357 (452)
T ss_pred CCeEEECCCCeeeeeCCHH
Confidence 3455556777777776554
No 49
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-34 Score=294.38 Aligned_cols=210 Identities=19% Similarity=0.199 Sum_probs=163.6
Q ss_pred eeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHH
Q 013810 168 KISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246 (436)
Q Consensus 168 ~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A 246 (436)
++.||+||||||++|..|++++.+ ..+++. .++..+. ..| ++|+|||+|++|+|+|
T Consensus 272 ~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts---~d~~~l~----------~lp----------k~VvIVGgG~iGvE~A 328 (659)
T PTZ00153 272 EFKVKNIIIATGSTPNIPDNIEVDQKSVFTS---DTAVKLE----------GLQ----------NYMGIVGMGIIGLEFM 328 (659)
T ss_pred EEECCEEEEcCCCCCCCCCCCCCCCCcEEeh---HHhhhhh----------hcC----------CceEEECCCHHHHHHH
Confidence 789999999999999988876654 234432 3333221 123 3899999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHH-HhcCCEEEecc-eEEEeCC----eEEE--c
Q 013810 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRGI-VKDVDSQ----KLIL--N 317 (436)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l-~~~gV~i~~~~-v~~i~~~----~v~~--~ 317 (436)
..|++++ .+|+++++. .+++.+++++.+.+.+.+ ++.||+++.+. |.+++.+ .+.+ .
T Consensus 329 ~~l~~~G--------------~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~ 394 (659)
T PTZ00153 329 DIYTALG--------------SEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHS 394 (659)
T ss_pred HHHHhCC--------------CeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEe
Confidence 9998876 899999984 678889999999888875 67899999995 8888642 1432 2
Q ss_pred C-------C--------cEEecceEEEecCCCCc-hh--cccCCCCCCCCCcEEeCCCCCCCC------CCCEEEecccc
Q 013810 318 D-------G--------TEVPYGLLVWSTGVGPS-TL--VKSLDLPKSPGGRIGIDEWLRVPS------VQDVFAVGDCS 373 (436)
Q Consensus 318 ~-------g--------~~i~~D~vi~a~G~~p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~------~~~Vya~GD~~ 373 (436)
+ + +++++|.||+|+|++|+ +. ++..+++.+ +|+|.||++|| |+ +|+|||+|||+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lq-Ts~~~~~~v~~IYAiGDv~ 472 (659)
T PTZ00153 395 ERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLR-VLREDQEVYDNIFCIGDAN 472 (659)
T ss_pred ccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCC-cCCCCCCCCCCEEEEEecC
Confidence 1 1 26999999999999999 33 456777776 48999999999 65 69999999999
Q ss_pred ccccCCCCccCCccHHHHHHHHHHHHhhhhhh--------------------cCCceeeecchhHHHHHHHh
Q 013810 374 GYLESTGKTVLPALAQVSYEQLHLFQKPSFLL--------------------ARNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 374 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~--------------------~~~~~~~~~~~~~~~~~~~~ 425 (436)
+. +++++.|..||+.||+||... ..|+..++++.+..+|++..
T Consensus 473 g~---------~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~ 535 (659)
T PTZ00153 473 GK---------QMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEK 535 (659)
T ss_pred CC---------ccCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHH
Confidence 75 679999999999999999754 12345577777777776554
No 50
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=4.3e-35 Score=291.36 Aligned_cols=337 Identities=18% Similarity=0.143 Sum_probs=217.6
Q ss_pred Cccccccccccccc--cccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPTAK--SYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||...|.|+|... |...|.......+. ..+++.++...... ..... .+.......++|+|||||||||++|
T Consensus 83 ~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v-~i~~l~~~~~~~~~----~~~~~-~~~~~~~~~~~VvIIGgGpaGl~aA 156 (457)
T PRK11749 83 NPLPAVCGRVCPQERLCEGACVRGKKGEPV-AIGRLERYITDWAM----ETGWV-LFKRAPKTGKKVAVIGAGPAGLTAA 156 (457)
T ss_pred CCchhhhcCcCCCccCHHHHhcCCCCCCCc-chHHHHHHHHHHHH----hcCCC-CCCCCccCCCcEEEECCCHHHHHHH
Confidence 57888999999988 88887654332222 33333333321110 00000 0111123457999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
..|++.|++|+|||+.+.+..... .+.+... ....+...........++.++.+.... ..+.+ ++
T Consensus 157 ~~l~~~g~~V~lie~~~~~gG~l~-----~gip~~~-~~~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~----~~ 221 (457)
T PRK11749 157 HRLARKGYDVTIFEARDKAGGLLR-----YGIPEFR-LPKDIVDREVERLLKLGVEIRTNTEVG-----RDITL----DE 221 (457)
T ss_pred HHHHhCCCeEEEEccCCCCCcEee-----ccCCCcc-CCHHHHHHHHHHHHHcCCEEEeCCEEC-----CccCH----HH
Confidence 999999999999999876432111 0111111 111111111222334578887765431 11211 11
Q ss_pred cccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
. .+.||+||||||+. ++.+++||.+ .++++..++........ ..... ..+++|+||
T Consensus 222 ~--------~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~------~~~~~--------~~g~~VvVi 279 (457)
T PRK11749 222 L--------RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAV------ADYDL--------PVGKRVVVI 279 (457)
T ss_pred H--------HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhcc------ccccC--------CCCCeEEEE
Confidence 1 46799999999995 7778899875 33333322211111000 00000 134599999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCe
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQK 313 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~ 313 (436)
|+|++|+|+|..+.+++ ..+|+++++.. .++.... ..+.+++.||+++.+. +.++.++.
T Consensus 280 GgG~~g~e~A~~l~~~G-------------~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~v~~i~~~~ 341 (457)
T PRK11749 280 GGGNTAMDAARTAKRLG-------------AESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAAPVEILGDE 341 (457)
T ss_pred CCCHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCCcEEEEecC
Confidence 99999999999998765 14899999843 3333222 2456778999999984 77775432
Q ss_pred -----EEEc-------------------CCcEEecceEEEecCCCCc-hhcc-cCCCCCCCCCcEEeCC-CCCCCCCCCE
Q 013810 314 -----LILN-------------------DGTEVPYGLLVWSTGVGPS-TLVK-SLDLPKSPGGRIGIDE-WLRVPSVQDV 366 (436)
Q Consensus 314 -----v~~~-------------------~g~~i~~D~vi~a~G~~p~-~~~~-~~~l~~~~~G~i~vd~-~~~~t~~~~V 366 (436)
|++. +++++++|.||+++|++|+ .++. ..++.++++|+|.||+ +++ |+.|+|
T Consensus 342 ~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~-Ts~~~V 420 (457)
T PRK11749 342 GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGR-TSLPGV 420 (457)
T ss_pred CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCc-cCCCCE
Confidence 5442 2346999999999999999 4443 5678888899999998 677 999999
Q ss_pred EEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 367 FAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 367 ya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
||+|||+.. ++++..|+.||+.||.+|..+..+
T Consensus 421 fA~GD~~~~---------~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 421 FAGGDIVTG---------AATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred EEeCCcCCC---------chHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999975 678999999999999999876544
No 51
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=4.4e-35 Score=294.63 Aligned_cols=285 Identities=18% Similarity=0.211 Sum_probs=199.8
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch----hhhhhcCcccccccccchhhcchhhhcCCCcEE
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LASTCVGTLEFRSVAEPIARIQPAISREPGSYF 135 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (436)
...+||+||||||||++||.+|++.|++|+||++. ++.++. +... .+... .. ...+.+......+..++.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~-~~~~~-~~-~~~l~~~l~~~l~~~gv~i 284 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENL-ISVPY-TT-GSQLAANLEEHIKQYPIDL 284 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccc-cccCC-CC-HHHHHHHHHHHHHHhCCeE
Confidence 34689999999999999999999999999999753 221111 1100 01100 01 1112222222233457887
Q ss_pred EE-eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhc
Q 013810 136 FL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 136 ~~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
+. .+|+.++.+.+.+.+.. .++. .+.||+||+|||+.++.|++||.... ..........+...+
T Consensus 285 ~~~~~V~~I~~~~~~~~v~~-~~g~--------~i~~d~lIlAtGa~~~~~~ipG~~~~--~~~~v~~~~~~~~~~---- 349 (515)
T TIGR03140 285 MENQRAKKIETEDGLIVVTL-ESGE--------VLKAKSVIVATGARWRKLGVPGEKEY--IGKGVAYCPHCDGPF---- 349 (515)
T ss_pred EcCCEEEEEEecCCeEEEEE-CCCC--------EEEeCEEEECCCCCcCCCCCCCHHHc--CCCeEEEeeccChhh----
Confidence 76 48888887665555432 3454 79999999999999999999986321 111000000000000
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l 294 (436)
..+++|+|||+|++|+|+|..|+.++ .+|+++++.+.+. ....+.+.+
T Consensus 350 -------------~~~k~VvViGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~l~-----~~~~l~~~l 397 (515)
T TIGR03140 350 -------------FKGKDVAVIGGGNSGIEAAIDLAGIV--------------RHVTVLEFADELK-----ADKVLQDKL 397 (515)
T ss_pred -------------cCCCEEEEECCcHHHHHHHHHHHhcC--------------cEEEEEEeCCcCC-----hhHHHHHHH
Confidence 22359999999999999999998776 8999999854332 123456667
Q ss_pred Hh-cCCEEEecc-eEEEeCC-----eEEEcC---C--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCC
Q 013810 295 SK-SGVRLVRGI-VKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVP 361 (436)
Q Consensus 295 ~~-~gV~i~~~~-v~~i~~~-----~v~~~~---g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t 361 (436)
++ .||+++.+. +.+++++ .|.+.+ + +++++|.|++++|.+|+ ++++.. ++++++|+|.||+++| |
T Consensus 398 ~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~-T 475 (515)
T TIGR03140 398 KSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGR-T 475 (515)
T ss_pred hcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCC-C
Confidence 66 599999985 8888654 355543 2 46999999999999999 577665 7788889999999999 8
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
++|+|||+|||+..+ .+++..|+.+|..||.+|..+.
T Consensus 476 s~p~IyAaGDv~~~~--------~~~~~~A~~~G~~Aa~~i~~~~ 512 (515)
T TIGR03140 476 SVPGIFAAGDVTTVP--------YKQIIIAMGEGAKAALSAFDYL 512 (515)
T ss_pred CCCCEEEcccccCCc--------cceEEEEEccHHHHHHHHHHHH
Confidence 999999999999852 3567789999999999998754
No 52
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=1.2e-34 Score=293.58 Aligned_cols=283 Identities=16% Similarity=0.185 Sum_probs=194.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh--hcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--CVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
..+||+|||||||||+||.+|++.|++|+|||++...+........ ..+.... . ...+.+.........++.++.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~-~-~~~l~~~l~~~~~~~gv~~~~~ 80 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNT-T-GPELMQEMRQQAQDFGVKFLQA 80 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCC-C-HHHHHHHHHHHHHHcCCEEecc
Confidence 3589999999999999999999999999999986432111110000 0111000 0 0112222222334457888888
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc----ccccccChHHHHHHHHHHHHhc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE----NATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~----~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
+|+.++.+.+.+.+.. .++ .+.||+||||||+.|+.|++||.+. .++..... + ...
T Consensus 81 ~V~~i~~~~~~~~V~~-~~g---------~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~-~-----~~~---- 140 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKT-ARG---------DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATC-D-----GEF---- 140 (555)
T ss_pred EEEEEEecCCEEEEEe-cCC---------EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeec-C-----hhh----
Confidence 9999987665444433 233 6889999999999999999999642 11111111 0 010
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l 294 (436)
..+++|+|||+|++|+|+|..|++++ .+|+++++.+.+. .... ...+.+
T Consensus 141 -------------~~g~~VvVIGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~~~-~~~~---~~~~~~ 189 (555)
T TIGR03143 141 -------------FTGMDVFVIGGGFAAAEEAVFLTRYA--------------SKVTVIVREPDFT-CAKL---IAEKVK 189 (555)
T ss_pred -------------cCCCEEEEECCCHHHHHHHHHHHccC--------------CEEEEEEeCCccc-cCHH---HHHHHH
Confidence 22359999999999999999998766 8999999865331 1222 223334
Q ss_pred HhcCCEEEecc-eEEEeCCe----EEE---cCCcE----Eecce----EEEecCCCCch-hcccCCCCCCCCCcEEeCCC
Q 013810 295 SKSGVRLVRGI-VKDVDSQK----LIL---NDGTE----VPYGL----LVWSTGVGPST-LVKSLDLPKSPGGRIGIDEW 357 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~~~----v~~---~~g~~----i~~D~----vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~ 357 (436)
...||+++.+. |.++.++. +.+ .+|++ +++|. |++++|++|+. +++. +++++++|+|.||++
T Consensus 190 ~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~ 268 (555)
T TIGR03143 190 NHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNED 268 (555)
T ss_pred hCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCc
Confidence 45699999995 88887532 222 35653 23676 99999999994 5554 578888899999999
Q ss_pred CCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 358 ~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+| |++|+|||+|||+... ++.+..|+.||+.||.+|..+.
T Consensus 269 ~~-Ts~p~IyAaGDv~~~~--------~~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 269 ME-TNVPGVYAAGDLRPKE--------LRQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred cc-cCCCCEEEceeccCCC--------cchheeHHhhHHHHHHHHHHHH
Confidence 99 8999999999997531 4567789999999999997543
No 53
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=2.2e-34 Score=300.36 Aligned_cols=333 Identities=16% Similarity=0.146 Sum_probs=217.1
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
+||...|.++|..+|+..|.+.....+ .....+.++..+...... ..... .+......++|+|||||||||+||.+
T Consensus 480 nPlp~icGrVC~h~Ce~~C~R~~~d~p-V~I~~Lkr~a~d~~~~~~-~~~~~--~~~~~~~~kkVaIIGGGPAGLSAA~~ 555 (1012)
T TIGR03315 480 NPLPAITGTICDHQCQYKCTRLDYDES-VNIREMKKVAAEKGYDEY-KTRWH--KPQGKSSAHKVAVIGAGPAGLSAGYF 555 (1012)
T ss_pred CChhhHhhCcCCcchHHHhcCCCCCCC-CcccHHHHHHHhhHHHhc-CccCC--CCCCCCCCCcEEEECCCHHHHHHHHH
Confidence 578889999999999999988765543 344555555554321110 00110 11112345899999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|||+++..+..... +.+........+.... ......++.++.+.. . .+.+. +..
T Consensus 556 LAr~G~~VTV~Ek~~~lGG~l~~-----~IP~~rlp~e~l~~~i-e~l~~~GVe~~~g~~----~---d~~ve---~l~- 618 (1012)
T TIGR03315 556 LARAGHPVTVFEKKEKPGGVVKN-----IIPEFRISAESIQKDI-ELVKFHGVEFKYGCS----P---DLTVA---ELK- 618 (1012)
T ss_pred HHHCCCeEEEEecccccCceeee-----cccccCCCHHHHHHHH-HHHHhcCcEEEEecc----c---ceEhh---hhh-
Confidence 99999999999998764332110 0111111111111111 122345777766521 1 11111 111
Q ss_pred cCCCCceeeeccEEEEeCCCC-CCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCC
Q 013810 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G 239 (436)
...||+||||||+. +..+.++|....++. ..+....+... +. ....+++|+|||||
T Consensus 619 -------~~gYDaVIIATGA~~~~~l~I~G~~~~v~~--avefL~~~~~~----------~~----~~~~GK~VVVIGGG 675 (1012)
T TIGR03315 619 -------NQGYKYVILAIGAWKHGPLRLEGGGERVLK--SLEFLRAFKEG----------PT----INPLGKHVVVVGGG 675 (1012)
T ss_pred -------cccccEEEECCCCCCCCCCCcCCCCcceee--HHHHHHHhhcc----------cc----ccccCCeEEEECCC
Confidence 45699999999997 455678875433332 11111111110 00 00234699999999
Q ss_pred hHHHHHHHHHHHH-HHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCeEE
Q 013810 240 PTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLI 315 (436)
Q Consensus 240 ~~g~e~A~~l~~~-~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~v~ 315 (436)
++|+|+|..+.+. + ..+|+++++.. .++...+++ .+.+ +.||+++... +.+++++.++
T Consensus 676 nvAmD~Ar~a~Rl~G-------------a~kVtLVyRr~~~~Mpa~~eEl----~~al-eeGVe~~~~~~p~~I~~g~l~ 737 (1012)
T TIGR03315 676 NTAMDAARAALRVPG-------------VEKVTVVYRRTKRYMPASREEL----EEAL-EDGVDFKELLSPESFEDGTLT 737 (1012)
T ss_pred HHHHHHHHHHHHhCC-------------CceEEEEEccCccccccCHHHH----HHHH-HcCCEEEeCCceEEEECCeEE
Confidence 9999999988764 2 15899999853 455544443 2333 4699998873 5666543322
Q ss_pred E-----------------cCCc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCC-CCCCCCCCEEEeccccc
Q 013810 316 L-----------------NDGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCSG 374 (436)
Q Consensus 316 ~-----------------~~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~-~~~t~~~~Vya~GD~~~ 374 (436)
+ .+|+ ++++|.||+|+|+.|+ .+++.++++++++|++.||++ ++ |+.|+|||+|||+.
T Consensus 738 v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~-Ts~pgVFAaGD~a~ 816 (1012)
T TIGR03315 738 CEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGE-TNITNVFVIGDANR 816 (1012)
T ss_pred EEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCc-cCCCCEEEEeCcCC
Confidence 1 1233 6899999999999998 678888999999999999987 77 89999999999997
Q ss_pred cccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 375 YLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 375 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
. +.++..|+.||+.||.+|...
T Consensus 817 G---------P~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 817 G---------PATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred C---------ccHHHHHHHHHHHHHHHHhcc
Confidence 6 788999999999999999853
No 54
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=9.1e-35 Score=304.66 Aligned_cols=342 Identities=18% Similarity=0.174 Sum_probs=221.1
Q ss_pred Ccccccccccccc--ccccCCCCCccC-CCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSIIM-PSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRL 77 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~a 77 (436)
+||...|.|+|.. .|+..|-..... .+. ....+.++..+... .......+.......++|+|||||||||+|
T Consensus 372 ~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v-~i~~l~r~~~d~~~----~~~~~~~~~~~~~~~~~V~IIGaGpAGl~a 446 (752)
T PRK12778 372 SALPAVCGRVCPQEKQCESKCIHGKMGEEAV-AIGYLERFVADYER----ESGNISVPEVAEKNGKKVAVIGSGPAGLSF 446 (752)
T ss_pred CCchhHhcCcCCCcCchHHhcccCCCCCCCc-CHHHHHHHHHHHHH----HhCCCCCCCCCCCCCCEEEEECcCHHHHHH
Confidence 4788999999996 799999776544 222 23333343332211 000111121222356899999999999999
Q ss_pred HHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecC
Q 013810 78 MKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTD 157 (436)
Q Consensus 78 A~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~ 157 (436)
|.+|++.|++|+|||+.+.+..... .|.+.+. +...+...........++.++.+.+.+ +.+.+. +
T Consensus 447 A~~l~~~G~~V~v~e~~~~~GG~l~-----~gip~~r-lp~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~~---~ 512 (752)
T PRK12778 447 AGDLAKRGYDVTVFEALHEIGGVLK-----YGIPEFR-LPKKIVDVEIENLKKLGVKFETDVIVG-----KTITIE---E 512 (752)
T ss_pred HHHHHHCCCeEEEEecCCCCCCeee-----ecCCCCC-CCHHHHHHHHHHHHHCCCEEECCCEEC-----CcCCHH---H
Confidence 9999999999999998765332110 1111111 111111111122344678887764431 222221 2
Q ss_pred CcccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEE
Q 013810 158 ELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235 (436)
Q Consensus 158 g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvV 235 (436)
.. ...||+||||||+ .|+.+++||.+ .++++..++.....+..... .....+ ...+++|+|
T Consensus 513 l~--------~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~---~~~~~~------~~~gk~VvV 575 (752)
T PRK12778 513 LE--------EEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAAS---PDSDTP------IKFGKKVAV 575 (752)
T ss_pred Hh--------hcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhccccc---ccccCc------ccCCCcEEE
Confidence 21 4679999999999 59999999976 45555544433222111000 000011 134569999
Q ss_pred ECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC
Q 013810 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS 311 (436)
Q Consensus 236 iG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~ 311 (436)
||+|++|+|+|..+.+++ . +|+++++.. .++....++ +.+++.||+++.+. +.++..
T Consensus 576 IGgG~~a~d~A~~~~r~G--------------a~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~~~~~i~~ 636 (752)
T PRK12778 576 VGGGNTAMDSARTAKRLG--------------AERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLHNPIEYLA 636 (752)
T ss_pred ECCcHHHHHHHHHHHHcC--------------CCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecCcceEEEE
Confidence 999999999999998876 5 499999853 233322221 34677899999874 655532
Q ss_pred ---Ce---EEEc---------CC-----------cEEecceEEEecCCCCch-hcccC-CCCCCCCCcEEeCCCCCCCCC
Q 013810 312 ---QK---LILN---------DG-----------TEVPYGLLVWSTGVGPST-LVKSL-DLPKSPGGRIGIDEWLRVPSV 363 (436)
Q Consensus 312 ---~~---v~~~---------~g-----------~~i~~D~vi~a~G~~p~~-~~~~~-~l~~~~~G~i~vd~~~~~t~~ 363 (436)
+. |++. +| .++++|.||+|+|+.|+. ++... +++++++|+|.||++++ |+.
T Consensus 637 ~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~-Ts~ 715 (752)
T PRK12778 637 DEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQ-SSI 715 (752)
T ss_pred CCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCC-CCC
Confidence 11 2321 12 259999999999999994 44443 78888899999999998 999
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
|+|||+|||+.. +.++..|+.+|+.||.+|..+..
T Consensus 716 ~gVfA~GD~~~g---------~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 716 PGIYAGGDIVRG---------GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCEEEeCCccCC---------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999986 67899999999999999987654
No 55
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=1.5e-34 Score=287.88 Aligned_cols=347 Identities=18% Similarity=0.184 Sum_probs=222.3
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
+||..-|.|+|..+|+..|.+..... ......+.++..+........ .+. .+.....++|+||||||||++||..
T Consensus 87 ~p~~~~~g~vC~~~Ce~~C~~~~~~~-~v~i~~l~r~~~~~~~~~~~~---~~~-~~~~~~~~~VvIIGaGpAGl~aA~~ 161 (471)
T PRK12810 87 NNFPEFTGRVCPAPCEGACTLNINFG-PVTIKNIERYIIDKAFEEGWV---KPD-PPVKRTGKKVAVVGSGPAGLAAADQ 161 (471)
T ss_pred CChhHHhcCcCCchhHHhccCCCCCC-CccHHHHHHHHHHHHHHcCCC---CCC-CCcCCCCCEEEEECcCHHHHHHHHH
Confidence 57888999999999999998886443 334455555554322111000 111 1122345799999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|||+.+....... .+.+.+.. ...+...........++.++.+.....+... +..
T Consensus 162 l~~~G~~V~vie~~~~~GG~l~-----~gip~~~~-~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~---------~~~- 225 (471)
T PRK12810 162 LARAGHKVTVFERADRIGGLLR-----YGIPDFKL-EKEVIDRRIELMEAEGIEFRTNVEVGKDITA---------EEL- 225 (471)
T ss_pred HHhCCCcEEEEecCCCCCceee-----ecCCcccC-CHHHHHHHHHHHHhCCcEEEeCCEECCcCCH---------HHH-
Confidence 9999999999999876432210 11111111 1111111112234467888776544322110 111
Q ss_pred cCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
...||+||+|||+. ++.+++||.+ .++++..++... ....+. .....+. ....+++|+|||+
T Consensus 226 -------~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~--~~~~~~---~~~~~~~----~~~~gk~VvVIGg 289 (471)
T PRK12810 226 -------LAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQ--NTRRVL---GDETEPF----ISAKGKHVVVIGG 289 (471)
T ss_pred -------HhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHH--HHhhhc---ccccccc----ccCCCCEEEEECC
Confidence 35799999999997 7788999975 344432221111 000000 0000000 0023469999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCccc------HH-HHHHHHHHHHhcCCEEEecc-eEEEe
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD------DR-LRHYATTQLSKSGVRLVRGI-VKDVD 310 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~------~~-~~~~~~~~l~~~gV~i~~~~-v~~i~ 310 (436)
|++|+|+|..+.+.+ ..+|++++......... +. ......+.+.+.||+++.+. ++++.
T Consensus 290 G~~g~e~A~~~~~~g-------------a~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~ 356 (471)
T PRK12810 290 GDTGMDCVGTAIRQG-------------AKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356 (471)
T ss_pred cHHHHHHHHHHHHcC-------------CCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE
Confidence 999999999887765 15788766543211110 00 01113456777899999984 77775
Q ss_pred C--CeE---E-----EcCC---------cEEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeC-CCCCCCCCCCEEE
Q 013810 311 S--QKL---I-----LNDG---------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-EWLRVPSVQDVFA 368 (436)
Q Consensus 311 ~--~~v---~-----~~~g---------~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd-~~~~~t~~~~Vya 368 (436)
. +.| + +.+| +++++|.||+|+|+.|+ .+++.++++++++|++.+| ++++ |+.|+|||
T Consensus 357 ~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~-Ts~~gVfa 435 (471)
T PRK12810 357 GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQ-TSNPKVFA 435 (471)
T ss_pred ccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCccc-CCCCCEEE
Confidence 3 222 2 2222 46999999999999997 3788889999989999998 7888 99999999
Q ss_pred eccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 369 VGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 369 ~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+|||+.. +.++..|+.||+.||.+|..+..
T Consensus 436 ~GD~~~g---------~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 436 AGDMRRG---------QSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ccccCCC---------chhHHHHHHHHHHHHHHHHHHHh
Confidence 9999985 56789999999999999987654
No 56
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=3e-34 Score=302.57 Aligned_cols=345 Identities=16% Similarity=0.151 Sum_probs=220.1
Q ss_pred Ccccccccccccc--ccccCCCCCccCCCcccccccccccccCCCCcccc--ccccCC-CCCCCCCCCcEEEECCchHHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQL--TQYSGL-GPTKANEKPRVVVLGSGWAGC 75 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~VvIIGgG~AGl 75 (436)
+||+..|.|+|.. .|+..|... .. ......+.++..+........ ..+... .+......++|+|||||||||
T Consensus 243 np~p~~~GrVCp~~~~CE~~C~~~--~~-pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGL 319 (944)
T PRK12779 243 NPLPNVTGRVCPQELQCQGVCTHT--KR-PIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGL 319 (944)
T ss_pred CChhHHhcCcCCCccCHHHhccCC--Cc-CcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHH
Confidence 4789999999998 699999765 22 222333333332210000000 011110 000123468999999999999
Q ss_pred HHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEe
Q 013810 76 RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETV 155 (436)
Q Consensus 76 ~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~ 155 (436)
+||.+|++.|++|+|||+.+..+..- ..|.+.++. ...+.+......+..++.|+.+.+.+. .+.+.
T Consensus 320 saA~~Lar~G~~VtVfE~~~~~GG~l-----~yGIP~~rl-p~~vi~~~i~~l~~~Gv~f~~n~~vG~-----dit~~-- 386 (944)
T PRK12779 320 INAYLLAVEGFPVTVFEAFHDLGGVL-----RYGIPEFRL-PNQLIDDVVEKIKLLGGRFVKNFVVGK-----TATLE-- 386 (944)
T ss_pred HHHHHHHHCCCeEEEEeeCCCCCceE-----EccCCCCcC-hHHHHHHHHHHHHhhcCeEEEeEEecc-----EEeHH--
Confidence 99999999999999999987643321 122232221 122222222233456888887755432 23332
Q ss_pred cCCcccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcE
Q 013810 156 TDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHC 233 (436)
Q Consensus 156 ~~g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v 233 (436)
+.. ...||+||||||+ .|+.+++||.+ .++++..++.............. ....|. ..+++|
T Consensus 387 -~l~--------~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~-~~~~~~------~~Gk~V 450 (944)
T PRK12779 387 -DLK--------AAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDY-ETPLPE------VKGKEV 450 (944)
T ss_pred -Hhc--------cccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccc-cccccc------cCCCEE
Confidence 222 4579999999999 58999999976 55555544443322211000000 000111 245699
Q ss_pred EEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe
Q 013810 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD 310 (436)
Q Consensus 234 vViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~ 310 (436)
+|||||++|+|+|..+.+++ .+|+++++.. .++....+ +.+ ..+.||+++... ++++.
T Consensus 451 vVIGGG~tA~D~A~ta~R~G--------------a~Vtlv~rr~~~~mpa~~~e----~~~-a~eeGV~~~~~~~p~~i~ 511 (944)
T PRK12779 451 FVIGGGNTAMDAARTAKRLG--------------GNVTIVYRRTKSEMPARVEE----LHH-ALEEGINLAVLRAPREFI 511 (944)
T ss_pred EEECCCHHHHHHHHHHHHcC--------------CEEEEEEecCcccccccHHH----HHH-HHHCCCEEEeCcceEEEE
Confidence 99999999999999999877 7899999853 33332222 222 345699998873 66664
Q ss_pred CC----eE---EE---------c--------CC--cEEecceEEEecCCCCchhc--ccCCCCCCCCCcEEeCCC-CCCC
Q 013810 311 SQ----KL---IL---------N--------DG--TEVPYGLLVWSTGVGPSTLV--KSLDLPKSPGGRIGIDEW-LRVP 361 (436)
Q Consensus 311 ~~----~v---~~---------~--------~g--~~i~~D~vi~a~G~~p~~~~--~~~~l~~~~~G~i~vd~~-~~~t 361 (436)
.+ .| ++ . +| .+++||.||+|+|+.|++.+ ...+++.+++|.|.||+. ++ |
T Consensus 512 ~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~-T 590 (944)
T PRK12779 512 GDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQR-T 590 (944)
T ss_pred ecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCc-c
Confidence 21 12 11 1 22 35999999999999999543 235788888999999975 67 9
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.|+|||+|||+.. +.++..|+.+|+.||.+|..+.
T Consensus 591 s~pgVFAaGD~~~G---------~~~vv~Ai~eGr~AA~~I~~~L 626 (944)
T PRK12779 591 SIKGVYSGGDAARG---------GSTAIRAAGDGQAAAKEIVGEI 626 (944)
T ss_pred CCCCEEEEEcCCCC---------hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 6789999999999999998654
No 57
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=295.29 Aligned_cols=334 Identities=19% Similarity=0.199 Sum_probs=216.0
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
+||...+.|+|..+|+..|.+.....+. ....+.++..+.... ......+.......++|+|||||||||+||..
T Consensus 137 ~p~p~~~grvC~~~Ce~~C~r~~~~~~v-~i~~l~r~~~~~~~~----~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~ 211 (652)
T PRK12814 137 IPLPGILGRICPAPCEEACRRHGVDEPV-SICALKRYAADRDME----SAERYIPERAPKSGKKVAIIGAGPAGLTAAYY 211 (652)
T ss_pred CCccceeeCCcCchhhHHHcCCCCCCCc-chhHHHHHHHHHHHh----cCcccCCCCCCCCCCEEEEECCCHHHHHHHHH
Confidence 5788999999999999998766544322 233333333321110 00111111122345799999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|||+++..+.... .+.+.+. ....+.+.........++.++.+.+.+++ +.+ .+.
T Consensus 212 La~~G~~Vtv~e~~~~~GG~l~-----~gip~~~-~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d-----v~~---~~~-- 275 (652)
T PRK12814 212 LLRKGHDVTIFDANEQAGGMMR-----YGIPRFR-LPESVIDADIAPLRAMGAEFRFNTVFGRD-----ITL---EEL-- 275 (652)
T ss_pred HHHCCCcEEEEecCCCCCceee-----ecCCCCC-CCHHHHHHHHHHHHHcCCEEEeCCcccCc-----cCH---HHH--
Confidence 9999999999999876532211 1111111 11111111111223457777666543322 111 011
Q ss_pred cCCCCceeeeccEEEEeCCCCC-CCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 161 TLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~~-~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
...||+||||||+.+ ..+++||.+ .+++...++. .... ... ....+++|+|||+
T Consensus 276 -------~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l------~~~~----~~~-------~~~~gk~VvVIGg 331 (652)
T PRK12814 276 -------QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFL------RNVA----LGT-------ALHPGKKVVVIGG 331 (652)
T ss_pred -------HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHH------HHhh----cCC-------cccCCCeEEEECC
Confidence 335999999999975 567899865 3333221111 1110 000 0133469999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK 313 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~ 313 (436)
|++|+|+|..+.+++ ..+|+++++.. .++..+.++ .+. .+.||+++.+. +.++.. +.
T Consensus 332 G~~a~e~A~~l~~~G-------------a~~Vtlv~r~~~~~mpa~~~ei----~~a-~~eGV~i~~~~~~~~i~~~~~~ 393 (652)
T PRK12814 332 GNTAIDAARTALRLG-------------AESVTILYRRTREEMPANRAEI----EEA-LAEGVSLRELAAPVSIERSEGG 393 (652)
T ss_pred CHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHH----HHH-HHcCCcEEeccCcEEEEecCCe
Confidence 999999999988765 25799999853 455544333 223 35699999874 666642 22
Q ss_pred E-----EEc---------------CCc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCC-CCCCCCCCEEEe
Q 013810 314 L-----ILN---------------DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAV 369 (436)
Q Consensus 314 v-----~~~---------------~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~-~~~t~~~~Vya~ 369 (436)
+ .+. +|+ ++++|.||+++|+.|+ .++...+++++.+|+|.||+. ++ |+.|+|||+
T Consensus 394 ~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~-Ts~pgVfA~ 472 (652)
T PRK12814 394 LELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQ-TSVAGVFAG 472 (652)
T ss_pred EEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCc-CCCCCEEEc
Confidence 1 111 222 5999999999999999 578888898888999999975 66 999999999
Q ss_pred ccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 370 GDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 370 GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
|||+.. +.++..|+.||+.||.+|..+..
T Consensus 473 GDv~~g---------~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 473 GDCVTG---------ADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CCcCCC---------chHHHHHHHHHHHHHHHHHHHHc
Confidence 999976 67899999999999999986653
No 58
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=255.12 Aligned_cols=296 Identities=21% Similarity=0.333 Sum_probs=213.2
Q ss_pred CCCCCcEEEECCchHHHHHHHhcccCCCeEEEEc---CCCcceecchhhhhhcC--------------------------
Q 013810 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVS---PRNHMVFTPLLASTCVG-------------------------- 109 (436)
Q Consensus 59 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie---~~~~~~~~~~~~~~~~~-------------------------- 109 (436)
.+..+|++|||||-+||+||.+++..|.+|.++| +.+. +....+++.|.+
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~-GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQ-GTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCC-CCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 3467999999999999999999999999999988 2221 111111222111
Q ss_pred --------cccccccccchhhcchhhhcCCCcEEEEeEeEeEeC-----CCCEEEEEEecCCcccCCCCceeeeccEEEE
Q 013810 110 --------TLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDT-----DNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (436)
Q Consensus 110 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~-----~~~~v~~~~~~~g~~~~~~~~~~~~~d~lVi 176 (436)
..++..+.+.+++....+..-..+.++..+|.-++. +.+.+.... .+|. +..+.++.+||
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~-~~gk------~~~~ta~~fvI 167 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATN-KKGK------ERFLTAENFVI 167 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEec-CCCc------eEEeecceEEE
Confidence 001111111122221111112223334445555543 222333222 2332 33789999999
Q ss_pred eCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHH
Q 013810 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (436)
Q Consensus 177 AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~ 256 (436)
|||.+|++|+|||..+..++++++ |.+...|+ +.+|||+|++++|+|.+|+.++
T Consensus 168 atG~RPrYp~IpG~~Ey~ITSDDl-------------Fsl~~~PG----------kTLvVGa~YVaLECAgFL~gfg--- 221 (503)
T KOG4716|consen 168 ATGLRPRYPDIPGAKEYGITSDDL-------------FSLPYEPG----------KTLVVGAGYVALECAGFLKGFG--- 221 (503)
T ss_pred EecCCCCCCCCCCceeeeeccccc-------------ccccCCCC----------ceEEEccceeeeehhhhHhhcC---
Confidence 999999999999988888888775 34666777 8999999999999999999988
Q ss_pred HHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc----eEEEeCCeEEE--c-----CCcEEecc
Q 013810 257 VRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI----VKDVDSQKLIL--N-----DGTEVPYG 325 (436)
Q Consensus 257 ~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~----v~~i~~~~v~~--~-----~g~~i~~D 325 (436)
.+|++..|+-+++.||.++.+.+.+.|+++||+|.... |..+++..+.+ . ++-+-++|
T Consensus 222 -----------~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~yd 290 (503)
T KOG4716|consen 222 -----------YDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYD 290 (503)
T ss_pred -----------CCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhh
Confidence 99999999999999999999999999999999998873 56666654322 1 12246799
Q ss_pred eEEEecCCCCc--h-hcccCCCCCCC-CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhh
Q 013810 326 LLVWSTGVGPS--T-LVKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKP 401 (436)
Q Consensus 326 ~vi~a~G~~p~--~-~~~~~~l~~~~-~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 401 (436)
.|+||+|+.+. + -+...|+..++ .|.|.||+.-+ |++|+|||+||+... .|.+...|++.|+..|+.
T Consensus 291 TVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~-t~vp~vyAvGDIl~~--------kpELTPvAIqsGrlLa~R 361 (503)
T KOG4716|consen 291 TVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEA-TNVPYVYAVGDILED--------KPELTPVAIQSGRLLARR 361 (503)
T ss_pred hhhhhhccccchhhcCCCccceeecccCCccccChHHh-cCCCceEEecceecC--------CcccchhhhhhchHHHHH
Confidence 99999999997 2 25566776654 58899999888 999999999999986 278999999999999999
Q ss_pred hhhhcCC
Q 013810 402 SFLLARN 408 (436)
Q Consensus 402 i~~~~~~ 408 (436)
++.-...
T Consensus 362 lf~gs~q 368 (503)
T KOG4716|consen 362 LFAGSTQ 368 (503)
T ss_pred HhcCcce
Confidence 9865443
No 59
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-33 Score=252.08 Aligned_cols=288 Identities=20% Similarity=0.243 Sum_probs=213.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc---------------ceecchhhhhhc-----Cccc----cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---------------MVFTPLLASTCV-----GTLE----FRSV 116 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~---------------~~~~~~~~~~~~-----~~~~----~~~~ 116 (436)
..+|.+|||||-.|+++|+..+..|.++.|+|..-. ++|...+..... |.+. -.+|
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW 98 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW 98 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence 468999999999999999999999999999995412 222211111110 0000 0011
Q ss_pred cc----------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 117 AE----------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 117 ~~----------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.. .+..+.+.......+.++.++..-+++.+-.|... ++.+ ..+++.+++||||.+|..|+
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~---d~~~------~~Ytak~iLIAtGg~p~~Pn 169 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVN---DGTK------IVYTAKHILIATGGRPIIPN 169 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEec---CCee------EEEecceEEEEeCCccCCCC
Confidence 11 11111111222345666666665555444344332 4431 15889999999999999999
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013810 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (436)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~ 266 (436)
|||. +..+.++.+. .+.+.|. |++|||+|++|+|+|..++.++
T Consensus 170 IpG~-E~gidSDgff-------------~Lee~Pk----------r~vvvGaGYIavE~Agi~~gLg------------- 212 (478)
T KOG0405|consen 170 IPGA-ELGIDSDGFF-------------DLEEQPK----------RVVVVGAGYIAVEFAGIFAGLG------------- 212 (478)
T ss_pred CCch-hhcccccccc-------------chhhcCc----------eEEEEccceEEEEhhhHHhhcC-------------
Confidence 9997 4445554433 3444554 9999999999999999999988
Q ss_pred ccEEEEEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC-----CeEEEcCCcEEecceEEEecCCCCch--
Q 013810 267 YIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-----QKLILNDGTEVPYGLLVWSTGVGPST-- 337 (436)
Q Consensus 267 ~~~V~lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-----~~v~~~~g~~i~~D~vi~a~G~~p~~-- 337 (436)
.++.|+-| +..|+.||+.++..+.+.++..||++|.++ ++++.. ..+....|....+|.++||+|+.|+.
T Consensus 213 -sethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 213 -SETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred -CeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCccc
Confidence 99999999 568999999999999999999999999985 666543 23445566666699999999999993
Q ss_pred -hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 338 -LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 338 -~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
-++..|++++++|.|.||++.+ |++|+||++||+++- ..+...|+.+|+..++.++..
T Consensus 292 L~le~vGVk~~~~g~IivDeYq~-Tnvp~I~avGDv~gk---------~~LTPVAiaagr~la~rlF~~ 350 (478)
T KOG0405|consen 292 LNLENVGVKTDKNGAIIVDEYQN-TNVPSIWAVGDVTGK---------INLTPVAIAAGRKLANRLFGG 350 (478)
T ss_pred ccchhcceeeCCCCCEEEecccc-CCCCceEEeccccCc---------EecchHHHhhhhhHHHHhhcC
Confidence 3677889999999999999999 999999999999996 778999999999999999863
No 60
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.5e-33 Score=283.83 Aligned_cols=281 Identities=18% Similarity=0.201 Sum_probs=200.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecc----hhhhhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
..+||+||||||||++||.+|++.|++|+||++. ++.+. .+... .+... .....+.+......+..++.++
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~-~~~~~--~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENF-ISVPE--TEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCccccc-CCCCC--CCHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999999999999999999864 11110 01100 00000 0111222222333445567776
Q ss_pred E-eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccc---cccccChHHHHHHHHHHHH
Q 013810 137 L-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLL 212 (436)
Q Consensus 137 ~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~ 212 (436)
. .+|+.++.....+.+.. .++. ++.||+||+|||+.++.+++||.++. ..+.....+ ..
T Consensus 285 ~~~~V~~I~~~~~~~~V~~-~~g~--------~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~-----~~--- 347 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVEL-ANGA--------VLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCD-----GP--- 347 (517)
T ss_pred cCCEEEEEEecCCeEEEEE-CCCC--------EEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccC-----ch---
Confidence 5 48889988655555432 3454 79999999999999999999986421 111111000 00
Q ss_pred hccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHH
Q 013810 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292 (436)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~ 292 (436)
...+++|+|||+|++|+|+|..|+.++ .+|+++++.+.+.. ...+.+
T Consensus 348 --------------~~~gk~VvVVGgG~~g~e~A~~L~~~~--------------~~Vtlv~~~~~l~~-----~~~l~~ 394 (517)
T PRK15317 348 --------------LFKGKRVAVIGGGNSGVEAAIDLAGIV--------------KHVTVLEFAPELKA-----DQVLQD 394 (517)
T ss_pred --------------hcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEECccccc-----cHHHHH
Confidence 023458999999999999999999876 89999998654321 134455
Q ss_pred HHHh-cCCEEEecc-eEEEeCC-----eEEEc---CC--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCC
Q 013810 293 QLSK-SGVRLVRGI-VKDVDSQ-----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLR 359 (436)
Q Consensus 293 ~l~~-~gV~i~~~~-v~~i~~~-----~v~~~---~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~ 359 (436)
.+.+ .||+++.+. +.++.++ .+.+. +| +++++|.+++++|.+|+ .+++.. ++++++|+|.||+++|
T Consensus 395 ~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~ 473 (517)
T PRK15317 395 KLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGA 473 (517)
T ss_pred HHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCC
Confidence 5665 599999995 8888654 24554 33 35999999999999998 577665 7788889999999999
Q ss_pred CCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 360 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
|++|+|||+|||+..+ .+.+..|+.+|..||.++..+.
T Consensus 474 -Ts~p~IyAaGDv~~~~--------~k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 474 -TSVPGVFAAGDCTTVP--------YKQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred -CCCCCEEECccccCCC--------CCEEEEhhhhHHHHHHHHHHHH
Confidence 9999999999999863 4778999999999999987654
No 61
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=5.6e-33 Score=271.31 Aligned_cols=292 Identities=24% Similarity=0.392 Sum_probs=241.9
Q ss_pred CCcEEEECCchHHHHHHHhccc---CCCeEEEEcCCCcceec-chhhhhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
+.++||||-|+||..+..++.+ .-+++|++-.+++..|. ..+..+..+....++. .-....++++.++.++.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi----~l~~~dwy~~~~i~L~~ 78 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI----SLNRNDWYEENGITLYT 78 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHH----hccchhhHHHcCcEEEc
Confidence 4789999999999999999877 45789999999988775 4555565554444333 33334467788999888
Q ss_pred e-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhcc
Q 013810 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
+ .|+.||+.++.|+.+ .|. .+.||.||+||||.|+.+++||.+ ..++.++++++........
T Consensus 79 ~~~v~~idr~~k~V~t~---~g~--------~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a----- 142 (793)
T COG1251 79 GEKVIQIDRANKVVTTD---AGR--------TVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA----- 142 (793)
T ss_pred CCeeEEeccCcceEEcc---CCc--------EeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH-----
Confidence 7 999999999998765 666 899999999999999999999987 7889999999988876642
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--CcccHHHHHHHHHH
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQ 293 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--~~~~~~~~~~~~~~ 293 (436)
+..++.+|||+|..|+|+|..|...+ .++++++-.+.+ ..+++...+.+++.
T Consensus 143 ------------r~~~~avVIGGGLLGlEaA~~L~~~G--------------m~~~Vvh~~~~lMerQLD~~ag~lL~~~ 196 (793)
T COG1251 143 ------------RNKKKAVVIGGGLLGLEAARGLKDLG--------------MEVTVVHIAPTLMERQLDRTAGRLLRRK 196 (793)
T ss_pred ------------hccCCcEEEccchhhhHHHHHHHhCC--------------CceEEEeecchHHHHhhhhHHHHHHHHH
Confidence 33447899999999999999999877 999999886533 56888888999999
Q ss_pred HHhcCCEEEecc-eEEEe----CCeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEE
Q 013810 294 LSKSGVRLVRGI-VKDVD----SQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (436)
Q Consensus 294 l~~~gV~i~~~~-v~~i~----~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vy 367 (436)
+++.|+++++++ ..++. ..++.++||+.+++|+|++|+|++|+ ++....|+++++ .|.||+++| |++|+||
T Consensus 197 le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd~mq-TsdpdIY 273 (793)
T COG1251 197 LEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVNDYMQ-TSDPDIY 273 (793)
T ss_pred HHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC--Ceeeccccc-ccCCCee
Confidence 999999999985 33332 36789999999999999999999999 799999999987 499999999 9999999
Q ss_pred EeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 368 AVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 368 a~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
|+|+|+.... + ...+...+..||+.+|.++.....
T Consensus 274 AvGEcae~~g---~--~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 274 AVGECAEHRG---K--VYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred ehhhHHHhcC---c--cceehhHHHHHHHHHHHHhccCcc
Confidence 9999998522 1 267788899999999999986544
No 62
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=298.06 Aligned_cols=343 Identities=15% Similarity=0.099 Sum_probs=222.3
Q ss_pred Ccccccccccccc--ccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||+..|.|+|.. .|+..|.+.....+. ....+.++..+.... ..... +....+.++|+|||||||||+||
T Consensus 374 np~p~~~grvCp~~~~Ce~~C~~~~~~~pv-~I~~ler~~~d~~~~----~~~~~--~~~~~~~~kVaIIG~GPAGLsaA 446 (1006)
T PRK12775 374 SIFPSICGRVCPQETQCEAQCIIAKKHESV-GIGRLERFVGDNARA----KPVKP--PRFSKKLGKVAICGSGPAGLAAA 446 (1006)
T ss_pred CChHHHhcCcCCCCCCHHHhCcCCCCCCCe-eecHHHHHHHHHHHH----cCCCC--CCCCCCCCEEEEECCCHHHHHHH
Confidence 5789999999998 899999888654433 444455554432210 01111 11122457999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
.+|++.|++|+|||+.+..+... ..|.+.+......+... .......++.++.+.+.+.+ +.+....
T Consensus 447 ~~La~~G~~VtV~E~~~~~GG~l-----~~gip~~rl~~e~~~~~-~~~l~~~Gv~~~~~~~vg~~-----~~~~~l~-- 513 (1006)
T PRK12775 447 ADLVKYGVDVTVYEALHVVGGVL-----QYGIPSFRLPRDIIDRE-VQRLVDIGVKIETNKVIGKT-----FTVPQLM-- 513 (1006)
T ss_pred HHHHHcCCcEEEEecCCCCccee-----eccCCccCCCHHHHHHH-HHHHHHCCCEEEeCCccCCc-----cCHHHHh--
Confidence 99999999999999987643211 11222221111112222 22234468888877554322 2211100
Q ss_pred cccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
. ...||+||||||+ .|+.++|||.+ .++++..++.....+.+.. .......+ ...+++|+||
T Consensus 514 ~--------~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~--~~~~~~~~------~~~Gk~VvVI 577 (1006)
T PRK12775 514 N--------DKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGD--KFPFLDTP------ISLGKSVVVI 577 (1006)
T ss_pred h--------ccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCcc--ccccccCC------ccCCCEEEEE
Confidence 0 2469999999999 48999999975 5555554444333221000 00000001 0235699999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-- 311 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-- 311 (436)
|||++|+|+|..+.++|. ..|+++.+.. .++....+ .+.+++.||+++.+. +.++..
T Consensus 578 GgG~tA~D~A~~a~rlGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~ 639 (1006)
T PRK12775 578 GAGNTAMDCLRVAKRLGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDA 639 (1006)
T ss_pred CCcHHHHHHHHHHHHcCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCC
Confidence 999999999999887761 4688888742 22322111 234677899999884 666631
Q ss_pred -Ce---EEEc-----------------CC--cEEecceEEEecCCCCch-hccc-CCCCCCCCCcEEeCC-----CCCCC
Q 013810 312 -QK---LILN-----------------DG--TEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDE-----WLRVP 361 (436)
Q Consensus 312 -~~---v~~~-----------------~g--~~i~~D~vi~a~G~~p~~-~~~~-~~l~~~~~G~i~vd~-----~~~~t 361 (436)
+. |++. +| .++++|.||+|+|+.|+. ++.. .+++++++|.|.+|+ +++ |
T Consensus 640 ~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~-T 718 (1006)
T PRK12775 640 EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQS-T 718 (1006)
T ss_pred CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcC-C
Confidence 22 2221 12 259999999999999994 4443 467888889999997 577 9
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+.|+|||+|||+.. +.++..|+.+|+.||.+|..+..
T Consensus 719 s~pgVFAaGDv~~G---------~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 719 NLPGVFAGGDIVTG---------GATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred CCCCEEEecCcCCC---------ccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 77899999999999999986643
No 63
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1.1e-32 Score=265.27 Aligned_cols=298 Identities=19% Similarity=0.155 Sum_probs=192.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
..++|+|||||+||+++|..|++.|++|++||+.+.+...... ......... ..+......+.+ .++.++.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~----~~~~~~~~~l~~-~~i~~~~~~~ 90 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIPEFRIPI----ERVREGVKELEE-AGVVFHTRTK 90 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCcccccCH----HHHHHHHHHHHh-CCeEEecCcE
Confidence 3478999999999999999999999999999998765322110 000000011 111222222333 3777776633
Q ss_pred E-eEeC----CCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHh
Q 013810 141 A-GIDT----DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLN 213 (436)
Q Consensus 141 ~-~id~----~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~ 213 (436)
. .++. ....+.... ...+ ...+.||+||||||+ .++.|++||.+ .++++.. .....+......-
T Consensus 91 v~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~--~~~~~~~~~~~~~ 161 (352)
T PRK12770 91 VCCGEPLHEEEGDEFVERI-VSLE------ELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSAL--EYLFRIRAAKLGY 161 (352)
T ss_pred Eeecccccccccccccccc-CCHH------HHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHH--HHHHHhhhccccc
Confidence 3 3221 111111000 0110 014789999999999 57888999875 3333321 1111111100000
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCCCCcccHHHHHHHHH
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEILSSFDDRLRHYATT 292 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~~l~~~~~~~~~~~~~ 292 (436)
......|. ..+++++|||+|++|+|+|..|...+ . +|+++++...... .......+
T Consensus 162 ~~~~~~~~------~~g~~vvViG~G~~g~e~A~~l~~~g--------------~~~Vtvi~~~~~~~~---~~~~~~~~ 218 (352)
T PRK12770 162 LPWEKVPP------VEGKKVVVVGAGLTAVDAALEAVLLG--------------AEKVYLAYRRTINEA---PAGKYEIE 218 (352)
T ss_pred cccccccc------cCCCEEEEECCCHHHHHHHHHHHHcC--------------CCeEEEEeecchhhC---CCCHHHHH
Confidence 00111121 22458999999999999999997655 5 4999988543211 11133455
Q ss_pred HHHhcCCEEEecc-eEEEeCC-e---EEE--------------------cCCcEEecceEEEecCCCCch-hccc-CCCC
Q 013810 293 QLSKSGVRLVRGI-VKDVDSQ-K---LIL--------------------NDGTEVPYGLLVWSTGVGPST-LVKS-LDLP 345 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~~-~---v~~--------------------~~g~~i~~D~vi~a~G~~p~~-~~~~-~~l~ 345 (436)
.|+++||+++++. +.+++++ + |++ .+++++++|.||+++|++|++ +..+ ++++
T Consensus 219 ~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~ 298 (352)
T PRK12770 219 RLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIE 298 (352)
T ss_pred HHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCce
Confidence 6889999999984 7777542 2 222 123479999999999999994 5555 7888
Q ss_pred CCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 346 KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 346 ~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
++++|+|.||++++ |+.|+|||+|||+.. +..+..|+.||+.||.+|....
T Consensus 299 ~~~~g~i~vd~~~~-t~~~~vyaiGD~~~~---------~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 299 LNRKGEIVVDEKHM-TSREGVFAAGDVVTG---------PSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred ecCCCcEeeCCCcc-cCCCCEEEEcccccC---------cchHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999 899999999999986 6788999999999999997654
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=4.2e-32 Score=269.35 Aligned_cols=344 Identities=17% Similarity=0.142 Sum_probs=218.7
Q ss_pred Cccccccccccc--cccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||...|.|+|. ..|+..|.+.....+ .....+.++..+........ ..++. ...+.++|+|||||||||+||
T Consensus 83 np~~~~~grvC~~~~~Ce~~C~~~~~~~~-v~i~~l~r~~~~~~~~~~~~---~~~~~-~~~~~~~V~IIG~GpaGl~aA 157 (467)
T TIGR01318 83 NTLPEICGRVCPQDRLCEGACTLNDEFGA-VTIGNLERYITDTALAMGWR---PDLSH-VVPTGKRVAVIGAGPAGLACA 157 (467)
T ss_pred CCchHhhcccCCCCCChHHhCcCCCCCCC-ccHHHHHHHHHHHHHHhCCC---CCCCC-cCCCCCeEEEECCCHHHHHHH
Confidence 478899999998 599999988755433 33444555544322111000 11111 122457999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
..|++.|++|+|+|+.+.+..... .+.+.. .+...+...........++.++.+..... .+.+ ++
T Consensus 158 ~~l~~~G~~V~i~e~~~~~gG~l~-----~gip~~-~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-----~~~~----~~ 222 (467)
T TIGR01318 158 DILARAGVQVVVFDRHPEIGGLLT-----FGIPSF-KLDKAVLSRRREIFTAMGIEFHLNCEVGR-----DISL----DD 222 (467)
T ss_pred HHHHHcCCeEEEEecCCCCCceee-----ecCccc-cCCHHHHHHHHHHHHHCCCEEECCCEeCC-----ccCH----HH
Confidence 999999999999999876432211 111111 11111112222234456777765532211 1111 11
Q ss_pred cccCCCCceeeeccEEEEeCCCCC-CCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~~~-~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
. ...||+||+|||+.+ ..+++||.+ +++++..++.. .....+. .+...+.+.. ....+++++||
T Consensus 223 ~--------~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~--~~~~~~~---~~~~~~~~~~-~~~~gk~VvVI 288 (467)
T TIGR01318 223 L--------LEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLI--ANTRQLM---GLPESPEEPL-IDVEGKRVVVL 288 (467)
T ss_pred H--------HhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHH--HHHHHhc---CCCccccccc-cccCCCEEEEE
Confidence 1 346999999999986 457899976 34443322111 0000010 0000000000 00234689999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-- 311 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-- 311 (436)
|+|++|+++|..+.+++ ..+|+++++.+ .++..+.++ +.+.+.||+++.+. +.++..
T Consensus 289 GgG~~a~d~A~~a~~~G-------------a~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~ 350 (467)
T TIGR01318 289 GGGDTAMDCVRTAIRLG-------------AASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDE 350 (467)
T ss_pred CCcHHHHHHHHHHHHcC-------------CCeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECC
Confidence 99999999999988765 14799999853 344443322 34567899999984 777742
Q ss_pred -Ce---EEEc---------C---------C--cEEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeC----CCCCCC
Q 013810 312 -QK---LILN---------D---------G--TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID----EWLRVP 361 (436)
Q Consensus 312 -~~---v~~~---------~---------g--~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd----~~~~~t 361 (436)
+. |++. + | .++++|.||+++|+.|+ .++...+++++++|+|.|| .+++ |
T Consensus 351 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~-T 429 (467)
T TIGR01318 351 DGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQ-T 429 (467)
T ss_pred CCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCcc-C
Confidence 22 2221 1 2 36999999999999997 3677778888889999999 5788 8
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.|+|||+|||+.. +.++..|+.+|+.||.+|..+.
T Consensus 430 ~~~gVfa~GD~~~~---------~~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 430 TNPKIFAGGDAVRG---------ADLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred CCCCEEEECCcCCC---------ccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 6688899999999999997653
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=7.2e-32 Score=278.67 Aligned_cols=344 Identities=15% Similarity=0.115 Sum_probs=216.3
Q ss_pred Cccccccccccc--cccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||...+.|+|. ..|+..|.+.....+. ....+.++..+..-... +.+.........++|+|||||||||+||
T Consensus 269 np~p~~~grvCp~~~~Ce~~C~~~~~~~~v-~I~~l~r~~~d~~~~~~----~~~~~~~~~~~~~~VaIIGaGpAGLsaA 343 (654)
T PRK12769 269 NSLPEITGRVCPQDRLCEGACTLRDEYGAV-TIGNIERYISDQALAKG----WRPDLSQVTKSDKRVAIIGAGPAGLACA 343 (654)
T ss_pred CCchhHhcccCCCCCChHHhccCCCCCCCe-ecCHHHHHHHHHHHHhC----CCCCCcccccCCCEEEEECCCHHHHHHH
Confidence 578999999998 4799999877654433 33334444433211100 1110011112457999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
.+|++.|++|+|||+.+..+.... .+.+.+ .+...+...........++.++.+.....+ +.+. +.
T Consensus 344 ~~L~~~G~~V~V~E~~~~~GG~l~-----~gip~~-~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~---~~ 409 (654)
T PRK12769 344 DVLARNGVAVTVYDRHPEIGGLLT-----FGIPAF-KLDKSLLARRREIFSAMGIEFELNCEVGKD-----ISLE---SL 409 (654)
T ss_pred HHHHHCCCeEEEEecCCCCCceee-----ecCCCc-cCCHHHHHHHHHHHHHCCeEEECCCEeCCc-----CCHH---HH
Confidence 999999999999999876432211 111111 111112111122234457777655322211 1111 10
Q ss_pred cccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
...||+|++|||+. ++.+++||.+ .+++...++. ....+.+.........+. ....+++|+||
T Consensus 410 ---------~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l--~~~~~~~~~~~~~~~~~~----~~~~gk~VvVI 474 (654)
T PRK12769 410 ---------LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFL--IANTKQVMGLEELPEEPF----INTAGLNVVVL 474 (654)
T ss_pred ---------HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHH--HHHHhhhccCcccccccc----ccCCCCeEEEE
Confidence 34699999999996 4567888875 3443321111 000001000000000000 00234689999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--C
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--S 311 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~ 311 (436)
|+|++|+|+|..+.+.+ ..+|+++++.. .++..+.+ .+.+++.||+++.+. ++++. +
T Consensus 475 GgG~~a~d~A~~a~r~g-------------a~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~ 536 (654)
T PRK12769 475 GGGDTAMDCVRTALRHG-------------ASNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNE 536 (654)
T ss_pred CCcHHHHHHHHHHHHcC-------------CCeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECC
Confidence 99999999999887765 15799998743 24443322 345778899999884 66664 1
Q ss_pred -Ce---EEE---------cCC---------c--EEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeCC----CCCCC
Q 013810 312 -QK---LIL---------NDG---------T--EVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGIDE----WLRVP 361 (436)
Q Consensus 312 -~~---v~~---------~~g---------~--~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd~----~~~~t 361 (436)
+. |++ .+| + ++++|.||+|+|+.|+ .+++.++++++++|.|.||+ +++ |
T Consensus 537 ~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~-T 615 (654)
T PRK12769 537 QGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQ-T 615 (654)
T ss_pred CCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcc-c
Confidence 22 232 112 2 5999999999999998 36788899999999999986 478 9
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.|+|||+||++.. +.++..|+.+|+.||.+|..+.
T Consensus 616 s~~gVfAaGD~~~g---------~~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 616 SNPKIFAGGDAVRG---------ADLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred CCCCEEEcCCcCCC---------CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 6788999999999999998764
No 66
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.98 E-value=1.3e-31 Score=242.21 Aligned_cols=287 Identities=21% Similarity=0.248 Sum_probs=208.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh---------------h------cCcccccccccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---------------C------VGTLEFRSVAEP 119 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~---------------~------~~~~~~~~~~~~ 119 (436)
..+||+|||+||+|..||+.+++.|++.++||++..++.+-+--+. + ....+......+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 3599999999999999999999999999999997655332110000 0 000111111111
Q ss_pred hh--------------hcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 120 IA--------------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 120 ~~--------------~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+. .-...+.+...+.++.+.-.-+++ +.|.+.. .+|. .+.+.++++|||||+.- +
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p--~~V~v~k-~dg~------~~ii~aKnIiiATGSeV--~ 186 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDP--NKVSVKK-IDGE------DQIIKAKNIIIATGSEV--T 186 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCC--ceEEEec-cCCC------ceEEeeeeEEEEeCCcc--C
Confidence 11 111112233445555554444443 4455543 2443 23789999999999952 3
Q ss_pred CCCCCc--c-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhc
Q 013810 186 GIHGVK--E-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (436)
Q Consensus 186 ~i~g~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~ 262 (436)
++||+. + .+.++.. .+.+.++|. +++|||+|.+|+|++..+.++|
T Consensus 187 ~~PGI~IDekkIVSStg-------------ALsL~~vPk----------~~~viG~G~IGLE~gsV~~rLG--------- 234 (506)
T KOG1335|consen 187 PFPGITIDEKKIVSSTG-------------ALSLKEVPK----------KLTVIGAGYIGLEMGSVWSRLG--------- 234 (506)
T ss_pred CCCCeEecCceEEecCC-------------ccchhhCcc----------eEEEEcCceeeeehhhHHHhcC---------
Confidence 455654 3 3333322 234556675 9999999999999999999988
Q ss_pred CCCCccEEEEEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C-e--EEEcC---C--cEEecceEEEe
Q 013810 263 HVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q-K--LILND---G--TEVPYGLLVWS 330 (436)
Q Consensus 263 ~~~~~~~V~lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~-~--v~~~~---g--~~i~~D~vi~a 330 (436)
.+||+++. +.+.+.+|.++++..++.|.+.|++|++++ +..++. + . |++.+ + ++++||.++++
T Consensus 235 -----seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVs 309 (506)
T KOG1335|consen 235 -----SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVS 309 (506)
T ss_pred -----CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEE
Confidence 99999998 678888999999999999999999999995 777654 2 2 33332 2 46999999999
Q ss_pred cCCCCch---hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 331 TGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 331 ~G~~p~~---~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+|++|-+ -++..|++.|.+|++.||..++ |.+|+||+|||++.. |++++.|..||..+.+.|...
T Consensus 310 iGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~-t~vP~i~~IGDv~~g---------pMLAhkAeeegI~~VE~i~g~ 377 (506)
T KOG1335|consen 310 IGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQ-TKVPHIYAIGDVTLG---------PMLAHKAEEEGIAAVEGIAGG 377 (506)
T ss_pred ccCcccccCCChhhcccccccccceecccccc-ccCCceEEecccCCc---------chhhhhhhhhchhheeeeccc
Confidence 9999972 2677888899999999999999 999999999999998 899999999999999988753
No 67
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.98 E-value=1.8e-31 Score=265.73 Aligned_cols=349 Identities=19% Similarity=0.194 Sum_probs=210.1
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
++|+..+.++|..+|...|.+.....+. ....+.++..+..... .+...........++|+|||||+||++||.+
T Consensus 87 ~p~p~~~grvC~~~Ce~~C~~~~~~~~v-~I~~l~r~~~~~~~~~----~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~ 161 (485)
T TIGR01317 87 NNFPEFTGRVCPAPCEGACTLGISEDPV-GIKSIERIIIDKGFQE----GWVQPRPPSKRTGKKVAVVGSGPAGLAAADQ 161 (485)
T ss_pred CCchhHHhCcCChhhHHhccCCCCCCCc-chhHHHHHHHHHHHHc----CCCCCCCCcCCCCCEEEEECCcHHHHHHHHH
Confidence 4678889999999999999877544332 3333433332211100 0000000111234799999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|||+.+....... .+.+.. .+...+...........++.++.+.....+... +..
T Consensus 162 L~~~g~~V~v~e~~~~~gG~l~-----~gip~~-~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~---------~~~- 225 (485)
T TIGR01317 162 LNRAGHTVTVFEREDRCGGLLM-----YGIPNM-KLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISA---------DEL- 225 (485)
T ss_pred HHHcCCeEEEEecCCCCCceee-----ccCCCc-cCCHHHHHHHHHHHHhCCCEEECCCEeCCccCH---------HHH-
Confidence 9999999999999876432110 011111 011111111112334467888766443322110 111
Q ss_pred cCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
...||+||+|||+. |+.+++||.+ .++++..++.... +...........+. ....+++|+|||+
T Consensus 226 -------~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~---~~~~~~~~~~~~~~----~~~~gk~VvViGg 291 (485)
T TIGR01317 226 -------KEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSA---TKALLGKDFKDIIF----IKAKGKKVVVIGG 291 (485)
T ss_pred -------HhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHH---hhhhcccccccccc----ccCCCCEEEEECC
Confidence 45799999999998 8889999975 3444322221111 10000000000000 0023469999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC---------cccH--HHHHHHHHHHHhcCCEE-Eec-
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS---------SFDD--RLRHYATTQLSKSGVRL-VRG- 304 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~---------~~~~--~~~~~~~~~l~~~gV~i-~~~- 304 (436)
|++|+|+|..+.+.+ ..+|+++++.+ .+. .++. +.....++..+..||.+ +.+
T Consensus 292 G~~g~d~a~~a~~~g-------------a~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~ 358 (485)
T TIGR01317 292 GDTGADCVGTSLRHG-------------AASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSI 358 (485)
T ss_pred cHHHHHHHHHHHHcC-------------CCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEec
Confidence 999999988777655 26899998743 211 1111 11122333344456543 233
Q ss_pred ceEEEeC---Ce---EEE--------cCC-----------cEEecceEEEecCCC-Cc-hhcccCCCCCCCCCcEEe-CC
Q 013810 305 IVKDVDS---QK---LIL--------NDG-----------TEVPYGLLVWSTGVG-PS-TLVKSLDLPKSPGGRIGI-DE 356 (436)
Q Consensus 305 ~v~~i~~---~~---v~~--------~~g-----------~~i~~D~vi~a~G~~-p~-~~~~~~~l~~~~~G~i~v-d~ 356 (436)
.+.++.. +. +++ ++| .++++|.||+++|+. |+ .+++.++++++++|++.+ |+
T Consensus 359 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~ 438 (485)
T TIGR01317 359 LTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYD 438 (485)
T ss_pred CcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCC
Confidence 3444432 11 221 123 269999999999996 76 578888998888898865 56
Q ss_pred CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+++ |+.|+|||+|||+.. +.++..|+.+|+.||.+|..+..
T Consensus 439 ~~~-Ts~~gVfAaGD~~~g---------~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 439 DYS-TSIPGVFAAGDCRRG---------QSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred Cce-ECCCCEEEeeccCCC---------cHHHHHHHHHHHHHHHHHHHHHh
Confidence 787 999999999999976 67889999999999999987654
No 68
>PRK13984 putative oxidoreductase; Provisional
Probab=99.98 E-value=5.4e-31 Score=270.69 Aligned_cols=345 Identities=19% Similarity=0.175 Sum_probs=206.5
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCcccccccc-CCCCCCCCCCCcEEEECCchHHHHHHH
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYS-GLGPTKANEKPRVVVLGSGWAGCRLMK 79 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~VvIIGgG~AGl~aA~ 79 (436)
++|...|.|+|...|+..|.+.....+. ....+.++..+.... ..+. ..........++|+|||+|+||+++|.
T Consensus 226 np~~~~~g~vC~~~Ce~~C~~~~~~~~~-~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~ 300 (604)
T PRK13984 226 NPLSMVCGRVCTHKCETVCSIGHRGEPI-AIRWLKRYIVDNVPV----EKYSEILDDEPEKKNKKVAIVGSGPAGLSAAY 300 (604)
T ss_pred CCccchhhCcCCchHHHhhcccCCCCCe-EeCcHHHHHHhHHHH----cCcccccCCCcccCCCeEEEECCCHHHHHHHH
Confidence 3677889999999999999876543322 122233222222110 0010 011112235678999999999999999
Q ss_pred hcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCc
Q 013810 80 GIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (436)
Q Consensus 80 ~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~ 159 (436)
.|++.|++|+|||+++........ +.... .+...+........+..++.++.+.....+ +.. +..
T Consensus 301 ~L~~~G~~v~vie~~~~~gG~~~~-----~i~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-----~~~----~~~ 365 (604)
T PRK13984 301 FLATMGYEVTVYESLSKPGGVMRY-----GIPSY-RLPDEALDKDIAFIEALGVKIHLNTRVGKD-----IPL----EEL 365 (604)
T ss_pred HHHHCCCeEEEEecCCCCCceEee-----cCCcc-cCCHHHHHHHHHHHHHCCcEEECCCEeCCc-----CCH----HHH
Confidence 999999999999998764322110 11111 111111111112234457777665333211 111 111
Q ss_pred ccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEEC
Q 013810 160 RTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237 (436)
Q Consensus 160 ~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG 237 (436)
...||+||+|||+. ++.+++||.+ .+++. .......+...+.. ....+ ..+++|+|||
T Consensus 366 --------~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~--a~~~l~~~~~~~~~---~~~~~-------~~~k~VvVIG 425 (604)
T PRK13984 366 --------REKHDAVFLSTGFTLGRSTRIPGTDHPDVIQ--ALPLLREIRDYLRG---EGPKP-------KIPRSLVVIG 425 (604)
T ss_pred --------HhcCCEEEEEcCcCCCccCCCCCcCCcCeEe--HHHHHHHHHhhhcc---CCCcC-------CCCCcEEEEC
Confidence 45799999999997 6888999975 33332 22222222222100 00000 1235999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce-
Q 013810 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK- 313 (436)
Q Consensus 238 ~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~- 313 (436)
||++|+|+|..+.+++.. .....+|+++...+....++....+ +.+ +.+.||+++.+. +.++.. +.
T Consensus 426 GG~~g~e~A~~l~r~~~~--------~~g~~~V~v~~~~r~~~~~~~~~~e-~~~-~~~~GV~i~~~~~~~~i~~~~g~v 495 (604)
T PRK13984 426 GGNVAMDIARSMARLQKM--------EYGEVNVKVTSLERTFEEMPADMEE-IEE-GLEEGVVIYPGWGPMEVVIENDKV 495 (604)
T ss_pred CchHHHHHHHHHHhcccc--------ccCceEEEEeccccCcccCCCCHHH-HHH-HHHcCCEEEeCCCCEEEEccCCEE
Confidence 999999999999875410 0012478876433222222222211 222 345799999873 555532 11
Q ss_pred --EEEc-------------------CCcEEecceEEEecCCCCc-hhcc-cC--CCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 314 --LILN-------------------DGTEVPYGLLVWSTGVGPS-TLVK-SL--DLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 314 --v~~~-------------------~g~~i~~D~vi~a~G~~p~-~~~~-~~--~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
|++. +++++++|.||+++|+.|+ .++. .+ +++. ++|+|.||+++| |++|+|||
T Consensus 496 ~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~-Ts~~gVfA 573 (604)
T PRK13984 496 KGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQ-TSIPWLFA 573 (604)
T ss_pred EEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCc-cCCCCEEE
Confidence 2221 1236999999999999998 4443 22 3444 468899999999 99999999
Q ss_pred eccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 369 VGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 369 ~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+|||+.. + ....|+.+|+.||.+|..+..
T Consensus 574 aGD~~~~---------~-~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 574 GGDIVHG---------P-DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred ecCcCCc---------h-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999985 4 457899999999999987653
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=2.2e-30 Score=266.40 Aligned_cols=345 Identities=16% Similarity=0.130 Sum_probs=217.7
Q ss_pred Cccccccccccc--cccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||...+.|+|. ..|+..|.+..... ......+.++..+.... ..+...........++|+|||||||||+||
T Consensus 252 np~p~~~grvCp~~~~Ce~~C~~~~~~~-~v~i~~l~r~~~d~~~~----~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA 326 (639)
T PRK12809 252 SSLPEICGRVCPQDRLCEGACTLKDHSG-AVSIGNLERYITDTALA----MGWRPDVSKVVPRSEKVAVIGAGPAGLGCA 326 (639)
T ss_pred CCcchhhcccCCCCCChHHhccCCCcCC-CcChhHHHHHHHHHHHH----hCCCCCCCcccCCCCEEEEECcCHHHHHHH
Confidence 578999999997 57999998775443 33344444444432211 111111111123468999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
..|++.|++|+|+|+.+..+... ..|.+.+ .+...+.+....+....++.++.+..... .+.+. +
T Consensus 327 ~~L~~~G~~Vtv~e~~~~~GG~l-----~~gip~~-~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~-----~~~~~---~- 391 (639)
T PRK12809 327 DILARAGVQVDVFDRHPEIGGML-----TFGIPPF-KLDKTVLSQRREIFTAMGIDFHLNCEIGR-----DITFS---D- 391 (639)
T ss_pred HHHHHcCCcEEEEeCCCCCCCee-----eccCCcc-cCCHHHHHHHHHHHHHCCeEEEcCCccCC-----cCCHH---H-
Confidence 99999999999999987643221 1122111 11112222222234456777766532211 11111 1
Q ss_pred cccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
. ...||+|++|||+. +..+++||.+ .+++...++.. .....+ ..+....... .....+++|+||
T Consensus 392 l--------~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~--~~~~~~---~~~~~~~~~~-~~~~~gk~vvVi 457 (639)
T PRK12809 392 L--------TSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLT--AHTRQL---MGLPESEEYP-LTDVEGKRVVVL 457 (639)
T ss_pred H--------HhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHH--HHHHhh---ccCccccccc-cccCCCCeEEEE
Confidence 1 35699999999996 4567888875 34443211111 000011 0000000000 001235699999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-- 311 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-- 311 (436)
|+|++++++|..+.+++ ..+|+++++.. .++....++. .+++.||++++.. ++++..
T Consensus 458 GgG~~a~d~a~~~~~~G-------------a~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv~~~~~~~~~~i~~~~ 519 (639)
T PRK12809 458 GGGDTTMDCLRTSIRLN-------------AASVTCAYRRDEVSMPGSRKEVV-----NAREEGVEFQFNVQPQYIACDE 519 (639)
T ss_pred CCcHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHHH-----HHHHcCCeEEeccCCEEEEECC
Confidence 99999999998877665 15899999853 2444333322 3467799999984 777742
Q ss_pred -CeE---EE---c------CC-----------cEEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeCC----CCCCC
Q 013810 312 -QKL---IL---N------DG-----------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGIDE----WLRVP 361 (436)
Q Consensus 312 -~~v---~~---~------~g-----------~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd~----~~~~t 361 (436)
+.| ++ . +| .++++|.||+|+|+.|+ .+++.++++++++|+|.+|+ ++| |
T Consensus 520 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~-T 598 (639)
T PRK12809 520 DGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQ-T 598 (639)
T ss_pred CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcc-c
Confidence 222 11 1 12 26899999999999997 46777889999999999986 377 8
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+.|+|||+|||+.. +.++..|+.+|+.||++|..+..
T Consensus 599 s~~gVfA~GD~~~g---------~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 599 HLKKVFAGGDAVHG---------ADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred CCCCEEEcCCCCCC---------chHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 67889999999999999987653
No 70
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-30 Score=215.15 Aligned_cols=289 Identities=16% Similarity=0.157 Sum_probs=205.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC--------cceecchhhhhhcCcccccccccchhhcchhhhcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGS 133 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (436)
+.+|+|||.|||+.+||+++++..++.+|+|-.- ++.-.... ....|.++.- ....+.+.......+.+.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~v-eNfPGFPdgi-~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDV-ENFPGFPDGI-TGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeecc-ccCCCCCccc-ccHHHHHHHHHHHHhhcc
Confidence 3589999999999999999999999999998421 11111000 0111111111 112344444455677899
Q ss_pred EEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHh
Q 013810 134 YFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (436)
Q Consensus 134 ~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (436)
.++...|.++|...+.+.+.+ +.+ .+.+|.+|+|||+..++..+||..+.-|+.+.+..+.-+.+.
T Consensus 86 ~i~tEtVskv~~sskpF~l~t--d~~--------~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGa---- 151 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWT--DAR--------PVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGA---- 151 (322)
T ss_pred eeeeeehhhccccCCCeEEEe--cCC--------ceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCc----
Confidence 999999999999888887764 443 789999999999999999999974443555554444333222
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHH-H
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT-T 292 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~-~ 292 (436)
.|- .+.|..+|||||.+++|-|.+|..++ .+|++++|.+.++ .+..++ +
T Consensus 152 -----api------frnk~laVIGGGDsA~EEA~fLtkya--------------skVyii~Rrd~fR-----As~~Mq~r 201 (322)
T KOG0404|consen 152 -----API------FRNKPLAVIGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHFR-----ASKIMQQR 201 (322)
T ss_pred -----chh------hcCCeeEEEcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhhh-----HHHHHHHH
Confidence 121 34457999999999999999999998 9999999976553 233333 3
Q ss_pred HHHhcCCEEEecc-eEEEeCC-----e-----EEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCC
Q 013810 293 QLSKSGVRLVRGI-VKDVDSQ-----K-----LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRV 360 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~~-----~-----v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~ 360 (436)
..+..+|+++.++ +.+..++ + +.+.+.+.++++-+++++|..|+ .+++. ++++|.+|+|.+-+.--.
T Consensus 202 a~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~ 280 (322)
T KOG0404|consen 202 AEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSL 280 (322)
T ss_pred HhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCccc
Confidence 4455689999985 3333322 2 33334457999999999999999 57776 899999999999866555
Q ss_pred CCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 361 t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
|++|++||+||+.... .+++..|...|.++|-..-.+
T Consensus 281 TsvpG~FAAGDVqD~k--------yRQAvTaAgsGciaaldAe~y 317 (322)
T KOG0404|consen 281 TSVPGVFAAGDVQDKK--------YRQAVTAAGSGCIAALDAERY 317 (322)
T ss_pred ccccceeeccccchHH--------HHHHHhhhccchhhhhhHHHH
Confidence 9999999999999752 467777778888777654433
No 71
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.96 E-value=4.8e-29 Score=253.83 Aligned_cols=333 Identities=15% Similarity=0.123 Sum_probs=208.2
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
+||...|.|+|...|+..|.+.....+... ..+.++..+..... .+ ..+.......++|+|||+||+||++|..
T Consensus 82 np~~~~~grvc~~~ce~~C~r~~~~~~v~i-~~l~r~~~~~~~~~----~~-~~~~~~~~~g~~V~VIGaGpaGL~aA~~ 155 (564)
T PRK12771 82 NPFPAVMGRVCYHPCESGCNRGQVDDAVGI-NAVERFLGDYAIAN----GW-KFPAPAPDTGKRVAVIGGGPAGLSAAYH 155 (564)
T ss_pred CCcchHhhCcCCchhHHhccCCCCCCCcCH-HHHHHHHHHHHHHc----CC-CCCCCCCCCCCEEEEECCCHHHHHHHHH
Confidence 478889999999999999987754433322 22434332211100 00 0111112345799999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|+|+.+.+..... .+.+.+ .+...+...........++.+..+...+.+... +..
T Consensus 156 l~~~G~~V~v~e~~~~~GG~l~-----~gip~~-~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~---------~~~- 219 (564)
T PRK12771 156 LRRMGHAVTIFEAGPKLGGMMR-----YGIPAY-RLPREVLDAEIQRILDLGVEVRLGVRVGEDITL---------EQL- 219 (564)
T ss_pred HHHCCCeEEEEecCCCCCCeee-----ecCCCc-cCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCH---------HHH-
Confidence 9999999999999876533211 111111 111111111112233456665544221111100 000
Q ss_pred cCCCCceeeeccEEEEeCCCCC-CCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 161 TLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~~-~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
...||+||+|||+.. ..+.++|.+ .+++..- .+...... .. ....+++|+|+|+
T Consensus 220 -------~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~------~~l~~~~~---~~--------~~~~gk~v~ViGg 275 (564)
T PRK12771 220 -------EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAV------DFLRAVGE---GE--------PPFLGKRVVVIGG 275 (564)
T ss_pred -------HhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHH------HHHHHhhc---cC--------CcCCCCCEEEECC
Confidence 235999999999974 455788754 2222211 11111100 00 0022458999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCe--
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQK-- 313 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~-- 313 (436)
|.++++++..+.+++ ..+|+++++.+ .++....++ +.+.+.||+++++. +.++..+.
T Consensus 276 g~~a~d~a~~a~~lg-------------a~~v~ii~r~~~~~~~~~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~ 337 (564)
T PRK12771 276 GNTAMDAARTARRLG-------------AEEVTIVYRRTREDMPAHDEEI-----EEALREGVEINWLRTPVEIEGDENG 337 (564)
T ss_pred hHHHHHHHHHHHHcC-------------CCEEEEEEecCcccCCCCHHHH-----HHHHHcCCEEEecCCcEEEEcCCCC
Confidence 999999998877654 26789998853 334333332 23456799999874 77775321
Q ss_pred --------EEE----cC-------C--cEEecceEEEecCCCCc-hhccc-CCCCCCCCCcEEeCCCCCCCCCCCEEEec
Q 013810 314 --------LIL----ND-------G--TEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (436)
Q Consensus 314 --------v~~----~~-------g--~~i~~D~vi~a~G~~p~-~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~Vya~G 370 (436)
+.. .+ | .++++|.||+|+|+.|+ .++.+ .++. +++|+|.||++.+.|+.|+|||+|
T Consensus 338 ~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~G 416 (564)
T PRK12771 338 ATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGG 416 (564)
T ss_pred EEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEecc
Confidence 111 12 2 36999999999999998 56664 5677 778999999843339999999999
Q ss_pred cccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 371 DCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 371 D~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
||+.. ++++..|+.||+.||.+|..+..
T Consensus 417 D~~~g---------~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 417 DMVPG---------PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred CcCCC---------chHHHHHHHHHHHHHHHHHHHHc
Confidence 99986 78899999999999999976654
No 72
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.96 E-value=1.1e-27 Score=256.81 Aligned_cols=286 Identities=15% Similarity=0.109 Sum_probs=189.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEE-eE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (436)
..+||+|||||||||+||.+|++.|++|+|||+++....+..... ...+.......+.....++....++.++. .+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~ 238 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---ETIDGKPAADWAAATVAELTAMPEVTLLPRTT 238 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---cccCCccHHHHHHHHHHHHhcCCCcEEEcCCE
Confidence 357999999999999999999999999999999876543321111 00111111111122333334344577765 47
Q ss_pred eEeEeCCCCEEEEEEec-------CCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHH
Q 013810 140 CAGIDTDNHVVHCETVT-------DELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLL 211 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~-------~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~ 211 (436)
|.+++.......+.... .+.. ......+.||+||||||+.++.+++||.+ ++++............
T Consensus 239 V~~i~~~~~v~~v~~~~~~~~~~~~~~~--~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~---- 312 (985)
T TIGR01372 239 AFGYYDHNTVGALERVTDHLDAPPKGVP--RERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRY---- 312 (985)
T ss_pred EEEEecCCeEEEEEEeeeccccccCCcc--ccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhh----
Confidence 77776533222221110 0100 00012588999999999999999999976 4555543333221100
Q ss_pred HhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHH
Q 013810 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291 (436)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~ 291 (436)
.. ..+++|+|||+|++++|+|..|++.+ ...|+++++.+.+ ...+.
T Consensus 313 -----~~---------~~gk~VvViG~G~~g~e~A~~L~~~G-------------~~vV~vv~~~~~~-------~~~l~ 358 (985)
T TIGR01372 313 -----GV---------APGKRIVVATNNDSAYRAAADLLAAG-------------IAVVAIIDARADV-------SPEAR 358 (985)
T ss_pred -----Cc---------CCCCeEEEECCCHHHHHHHHHHHHcC-------------CceEEEEccCcch-------hHHHH
Confidence 00 12358999999999999999999765 1457888765322 23456
Q ss_pred HHHHhcCCEEEecc-eEEEeCC----eEEEc----CCcEEecceEEEecCCCCc-hhcccCCCCC--CCC--CcEEeCCC
Q 013810 292 TQLSKSGVRLVRGI-VKDVDSQ----KLILN----DGTEVPYGLLVWSTGVGPS-TLVKSLDLPK--SPG--GRIGIDEW 357 (436)
Q Consensus 292 ~~l~~~gV~i~~~~-v~~i~~~----~v~~~----~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~--~~~--G~i~vd~~ 357 (436)
+.|++.||+++.+. +.+++++ .|++. ++++++||.|+++.|+.|+ .++..+++++ ++. +++.
T Consensus 359 ~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~---- 434 (985)
T TIGR01372 359 AEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP---- 434 (985)
T ss_pred HHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec----
Confidence 67889999999995 8888653 35554 4567999999999999999 5777777654 221 2221
Q ss_pred CCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 358 ~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|+.|+||++|||++ ...+..|+.+|+.||..|+..
T Consensus 435 --~t~v~gVyaaGD~~g----------~~~~~~A~~eG~~Aa~~i~~~ 470 (985)
T TIGR01372 435 --GDAVQGCILAGAANG----------LFGLAAALADGAAAGAAAARA 470 (985)
T ss_pred --CCCCCCeEEeeccCC----------ccCHHHHHHHHHHHHHHHHHH
Confidence 278999999999997 457788999999999988643
No 73
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.96 E-value=4.6e-28 Score=237.71 Aligned_cols=304 Identities=15% Similarity=0.099 Sum_probs=181.7
Q ss_pred CCCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
..++|+|||||||||+||..|++ .|++|+|||+.+..+.... ++.. ++.... ..+......+....++.|+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr-~gva---P~~~~~-k~v~~~~~~~~~~~~v~~~~n 99 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR-SGVA---PDHPET-KNVTNQFSRVATDDRVSFFGN 99 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe-eccC---CCcchh-HHHHHHHHHHHHHCCeEEEcC
Confidence 35789999999999999999986 7999999999986543211 1111 111111 111111222334466777654
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCC-CCCCCCCCc-cccccccChHHHHHHHHHHHHhccc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~-~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
...+ ..+.+. +- ...||+||||||+.+ +.++|||.+ .+++...++.....-....
T Consensus 100 v~vg-----~dvtl~---~L---------~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~------ 156 (491)
T PLN02852 100 VTLG-----RDVSLS---EL---------RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDC------ 156 (491)
T ss_pred EEEC-----ccccHH---HH---------hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhh------
Confidence 2222 122221 11 346999999999985 778999976 4555444332211100000
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHH--------HHHHhhhcCCCCccEEEEEeCCCC--CCcccHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM--------RDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRL 286 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~--------~~~~~~~~~~~~~~~V~lv~~~~~--l~~~~~~~ 286 (436)
...+. ....+++|+|||+|++|+|+|..|.+.+. +........ ..-.+|+++.|... .+....++
T Consensus 157 ~~~~~----~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~-~~~~~V~iv~RRg~~~~~ft~~El 231 (491)
T PLN02852 157 VHLPP----DLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRG-SSVRKVYLVGRRGPVQAACTAKEL 231 (491)
T ss_pred hhhhh----cccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhh-CCCCEEEEEEcCChHhCCCCHHHH
Confidence 00000 00234699999999999999999976410 111111111 12267999998531 11111121
Q ss_pred HH-------------------------------------HHHHHHHh---------cCCEEEecc-eEEEeC-----C--
Q 013810 287 RH-------------------------------------YATTQLSK---------SGVRLVRGI-VKDVDS-----Q-- 312 (436)
Q Consensus 287 ~~-------------------------------------~~~~~l~~---------~gV~i~~~~-v~~i~~-----~-- 312 (436)
.+ .+.+...+ ++|.+++.. ..+|.. +
T Consensus 232 rel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v 311 (491)
T PLN02852 232 RELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHV 311 (491)
T ss_pred HHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcE
Confidence 11 12222112 467776653 444421 1
Q ss_pred -eEEEc-----------------CCc--EEecceEEEecCCC--Cc-h--hcccCCCCCCCCCcEEeCCCCCCCCCCCEE
Q 013810 313 -KLILN-----------------DGT--EVPYGLLVWSTGVG--PS-T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (436)
Q Consensus 313 -~v~~~-----------------~g~--~i~~D~vi~a~G~~--p~-~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vy 367 (436)
++++. +|+ +++||.||.++|++ |. . +....++..+.+|+|.+|+.++ |+.|+||
T Consensus 312 ~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~-T~ipGvy 390 (491)
T PLN02852 312 AGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGA-DTEPGLY 390 (491)
T ss_pred EEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCc-cCCCCEE
Confidence 12221 232 58999999999998 43 2 2233456667789999998888 8999999
Q ss_pred EeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 368 AVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 368 a~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
|+|||..++ ...+..++.+|+.++.+|..+.
T Consensus 391 AaGDi~~Gp--------~gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 391 VVGWLKRGP--------TGIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred EeeeEecCC--------CCeeeecHhhHHHHHHHHHHHH
Confidence 999999873 4488899999999999998764
No 74
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=228.05 Aligned_cols=290 Identities=25% Similarity=0.281 Sum_probs=220.8
Q ss_pred EEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceec--chhhhhhcCcccccccccchhhcchhhhcCCCcEEEE-eE
Q 013810 65 VVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (436)
Q Consensus 65 VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (436)
++|||+|+||+++|..|++ .+.+++++..++...|. +.......+......+..... +....++.+.. .+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~ 75 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-----FNRATGIDVRTGTE 75 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-----hHHhhCCEEeeCCE
Confidence 5899999999999999887 44568777776654443 333333322222222211111 12234566555 48
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCC
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV 219 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (436)
|+.+|+..+.+.+. ++ ++.||+||+|||+.+..++ .......++.+..+++..+.....
T Consensus 76 v~~id~~~~~v~~~---~g---------~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------- 134 (415)
T COG0446 76 VTSIDPENKVVLLD---DG---------EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAE-------- 134 (415)
T ss_pred EEEecCCCCEEEEC---CC---------cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHh--------
Confidence 99999999998875 34 6889999999999998887 222256788888888888877642
Q ss_pred CCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCccc-HHHHHHHHHHHHhc
Q 013810 220 PGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLRHYATTQLSKS 297 (436)
Q Consensus 220 p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~-~~~~~~~~~~l~~~ 297 (436)
..++++|+|+|+.|+++|..+...| .+|++++.. +.++.+. +++.+.+.+.++++
T Consensus 135 ---------~~~~v~vvG~G~~gle~A~~~~~~G--------------~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (415)
T COG0446 135 ---------PPKDVVVVGAGPIGLEAAEAAAKRG--------------KKVTLIEAADRLGGQLLDPEVAEELAELLEKY 191 (415)
T ss_pred ---------ccCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcccccchhhhhHHHHHHHHHHHHHC
Confidence 1248999999999999999999876 999999995 5666655 88999999999999
Q ss_pred CCEEEecc-eEEEeCCe-------EEEcCCcEEecceEEEecCCCCch-hcccCC-CCCCCCCcEEeCCCCCCCC-CCCE
Q 013810 298 GVRLVRGI-VKDVDSQK-------LILNDGTEVPYGLLVWSTGVGPST-LVKSLD-LPKSPGGRIGIDEWLRVPS-VQDV 366 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~-------v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~-l~~~~~G~i~vd~~~~~t~-~~~V 366 (436)
||+++.+. +.+++.+. +...++.++++|++++++|.+|+. +....+ .....+|++.||++++ ++ .++|
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~-~~~~~~v 270 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGG-TSKDPDV 270 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccc-cCCCCCE
Confidence 99999985 88887642 577788899999999999999985 444443 1456678999999999 76 9999
Q ss_pred EEeccccccccCC-CCccCCccHHHHHHHHHHHHhhhhh
Q 013810 367 FAVGDCSGYLEST-GKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 367 ya~GD~~~~~~~~-~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
||+|||+..+... ++......+..|..+++.++.++..
T Consensus 271 ~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 271 YAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred EeccceEeeecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 9999999987643 4555578899999999999999984
No 75
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-28 Score=217.66 Aligned_cols=282 Identities=18% Similarity=0.196 Sum_probs=193.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhh---hhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA---STCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
..+||+||||||||-+||++.+|.|.+.-|+-. +|+.+.+-. ....+.+... ...+....+..-+.+.+.+..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IENfIsv~~te--Gpkl~~ale~Hv~~Y~vDimn 285 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIENFISVPETE--GPKLAAALEAHVKQYDVDVMN 285 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchhheecccccc--chHHHHHHHHHHhhcCchhhh
Confidence 458999999999999999999999998766532 232221110 1111111111 011222222233344555443
Q ss_pred e-EeEeEeCC---CCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHH
Q 013810 138 S-HCAGIDTD---NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKL 210 (436)
Q Consensus 138 ~-~v~~id~~---~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~ 210 (436)
. +.+++.+. ...+.+ .+.+|. .+.++.+|||||++.+..++||.++ ....++.-++.
T Consensus 286 ~qra~~l~~a~~~~~l~ev-~l~nGa--------vLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDG------- 349 (520)
T COG3634 286 LQRASKLEPAAVEGGLIEV-ELANGA--------VLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG------- 349 (520)
T ss_pred hhhhhcceecCCCCccEEE-EecCCc--------eeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCC-------
Confidence 2 44555542 222222 334776 8999999999999999999999862 22222222221
Q ss_pred HHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHH
Q 013810 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290 (436)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~ 290 (436)
|- .++|+|+|||||++|+|.|..|+... ..||+++-.+.+. ..+.+
T Consensus 350 ---------PL------F~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eLk-----AD~VL 395 (520)
T COG3634 350 ---------PL------FKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPELK-----ADAVL 395 (520)
T ss_pred ---------cc------cCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhhh-----hHHHH
Confidence 11 44569999999999999999999887 8999998754432 33456
Q ss_pred HHHHHhc-CCEEEecc-eEEEeCC-----eEEEc---CCc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCC
Q 013810 291 TTQLSKS-GVRLVRGI-VKDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW 357 (436)
Q Consensus 291 ~~~l~~~-gV~i~~~~-v~~i~~~-----~v~~~---~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~ 357 (436)
++.|+.. +|+++++. -++|.++ ++... .|+ .++-+-|++-+|..|| +|++.. ++++++|-|.||..
T Consensus 396 q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~ 474 (520)
T COG3634 396 QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDAR 474 (520)
T ss_pred HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecC
Confidence 6666654 89999984 6777654 33332 233 4778899999999999 688887 88999999999999
Q ss_pred CCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 358 ~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.. |+.|+|||+|||+..+ .+++..|+.+|..|+-+.+.+.
T Consensus 475 g~-TsvpGvFAAGD~T~~~--------yKQIIIamG~GA~AaL~AFDyL 514 (520)
T COG3634 475 GE-TNVPGVFAAGDCTTVP--------YKQIIIAMGEGAKASLSAFDYL 514 (520)
T ss_pred CC-cCCCceeecCcccCCc--------cceEEEEecCcchhhhhhhhhh
Confidence 99 9999999999999975 5778888888888887776554
No 76
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.95 E-value=1e-27 Score=211.97 Aligned_cols=304 Identities=18% Similarity=0.232 Sum_probs=210.4
Q ss_pred CCCCCcEEEECCchHHHHHHHhccc-CC-CeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 59 ANEKPRVVVLGSGWAGCRLMKGIDT-SL-YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 59 ~~~~~~VvIIGgG~AGl~aA~~L~~-~g-~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
..++.+|+|||||.+|+++|..+.+ .+ -+|.|||+.++++|+|.+.-.-.|.........+..++.+ .+..++
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP-----~~a~wi 110 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIP-----KGATWI 110 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCccccccc-----CCcHHH
Confidence 3467899999999999999999976 33 3699999999999999887665565555444444444433 356667
Q ss_pred EeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-----cccccccChHHHHHHHHHHH
Q 013810 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-----ENATFLREVHHAQEIRRKLL 211 (436)
Q Consensus 137 ~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-----~~~~~~~~~~~~~~~~~~~~ 211 (436)
+.+|..++++++.+.+. +|+ +|+|||+|||+|..-++-.|+|.. +++.+.++.....+..+.+.
T Consensus 111 ~ekv~~f~P~~N~v~t~---gg~--------eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~ 179 (446)
T KOG3851|consen 111 KEKVKEFNPDKNTVVTR---GGE--------EISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELM 179 (446)
T ss_pred HHHHHhcCCCcCeEEcc---CCc--------EEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHH
Confidence 78999999999999875 666 999999999999998888888873 57788888888888777763
Q ss_pred HhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCccc-HHHHHHH
Q 013810 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD-DRLRHYA 290 (436)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~-~~~~~~~ 290 (436)
.. +++.-+--.-++++-|--|-.-.-+..+..+++.. .+ .++.++....+-.-|+ ....+.+
T Consensus 180 ~f--------------k~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~g-vR--d~a~iiy~Tsl~~iFgVk~Y~~AL 242 (446)
T KOG3851|consen 180 NF--------------KKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRG-VR--DNANIIYNTSLPTIFGVKHYADAL 242 (446)
T ss_pred hc--------------cCCceEEecCCCccccCCCchhhhhhhHHHHHHhC-cc--ccccEEEecCccceecHHHHHHHH
Confidence 21 11111222222222211111111111122222211 22 3444444432211222 4566788
Q ss_pred HHHHHhcCCEEEecc-eEEEeCC--eEEEc---C-C--cEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCC-CCC
Q 013810 291 TTQLSKSGVRLVRGI-VKDVDSQ--KLILN---D-G--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEW-LRV 360 (436)
Q Consensus 291 ~~~l~~~gV~i~~~~-v~~i~~~--~v~~~---~-g--~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~-~~~ 360 (436)
++..++++|++...+ +.++..+ ..+++ + | ++++++++.+.+.+++.++++...+. |..||+.||.. +|+
T Consensus 243 ~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~a-dktGfvdVD~~TlQs 321 (446)
T KOG3851|consen 243 EKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLA-DKTGFVDVDQSTLQS 321 (446)
T ss_pred HHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCccc-CcccceecChhhhcc
Confidence 888889999998775 6666542 22232 2 4 46999999999999998888877754 88899999965 999
Q ss_pred CCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 361 t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
+.+||||++|||.+.|+ .+++..+..|...+-+|+.
T Consensus 322 ~kypNVFgiGDc~n~Pn-------sKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 322 KKYPNVFGIGDCMNLPN-------SKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred ccCCCceeeccccCCCc-------hhhHHHHHhcCchhhhhHH
Confidence 99999999999999876 6788888888888888885
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.95 E-value=1.8e-26 Score=227.34 Aligned_cols=274 Identities=14% Similarity=0.100 Sum_probs=176.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhh-----------------------hhhcC---------
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA-----------------------STCVG--------- 109 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~-----------------------~~~~~--------- 109 (436)
.++|+|||||+|||+||++|++.|++|+|+|+++..+...... .....
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 4789999999999999999999999999999987653321110 00000
Q ss_pred -cccccc------------cccchhhcchhhhcCCCcE---EEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccE
Q 013810 110 -TLEFRS------------VAEPIARIQPAISREPGSY---FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173 (436)
Q Consensus 110 -~~~~~~------------~~~~~~~~~~~~~~~~~~~---~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~ 173 (436)
.+.... ....+.++...+.+..++. .+..+|+.+++.++.+.+.....+.. ..+..||+
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~-----~~~~~~d~ 164 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGF-----SKDEIFDA 164 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCc-----eEEEEcCE
Confidence 000000 0122333444445555554 34468999998777776654322211 11467999
Q ss_pred EEEeCC--CCCCCCCCCCCc---cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHH
Q 013810 174 LVIALG--AEASTFGIHGVK---ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 248 (436)
Q Consensus 174 lViAtG--~~~~~~~i~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~ 248 (436)
|||||| +.|+.|++||.+ ...++..++..... .++++|+|||+|.+|+|+|.+
T Consensus 165 VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~----------------------~~gk~VvVVG~G~Sg~diA~~ 222 (461)
T PLN02172 165 VVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDP----------------------FKNEVVVVIGNFASGADISRD 222 (461)
T ss_pred EEEeccCCCCCcCCCCCCcccCCceEEEecccCCccc----------------------cCCCEEEEECCCcCHHHHHHH
Confidence 999999 679999999975 23344444443222 234599999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEe-CCeEEEcCCcEEecce
Q 013810 249 LSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD-SQKLILNDGTEVPYGL 326 (436)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~-~~~v~~~~g~~i~~D~ 326 (436)
|+..+ ++|++++|....... +.+......++.+ .|..+. ++.|++.||+++++|.
T Consensus 223 L~~~a--------------~~V~l~~r~~~~~~~---------~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~ 279 (461)
T PLN02172 223 IAKVA--------------KEVHIASRASESDTY---------EKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADT 279 (461)
T ss_pred HHHhC--------------CeEEEEEeecccccc---------ccCcCCCCceEECCcccceecCCeEEECCCCCccCCE
Confidence 99876 899999985321110 0111112333434 355543 4569999999999999
Q ss_pred EEEecCCCCc-hhcccCCCCCCCCCcEEeCCC--------CCCCC-CCCEEEeccccccccCCCCccCCccHHHHHHHHH
Q 013810 327 LVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW--------LRVPS-VQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLH 396 (436)
Q Consensus 327 vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~--------~~~t~-~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~ 396 (436)
||+|+|++++ +++...+ .+.+|++ .=... .|+++.+|=... ......+..|++
T Consensus 280 Ii~~TGy~~~~pfL~~~~-------~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~----------~~~f~~~E~Qa~ 342 (461)
T PLN02172 280 IVHCTGYKYHFPFLETNG-------YMRIDENRVEPLYKHVFPPALAPGLSFIGLPAM----------GIQFVMFEIQSK 342 (461)
T ss_pred EEECCcCCccccccCccc-------ceeeCCCcchhhHHhhcCCCCCCcEEEEecccc----------ccCchhHHHHHH
Confidence 9999999999 6765433 3444332 11133 489999996643 234566778888
Q ss_pred HHHhhh
Q 013810 397 LFQKPS 402 (436)
Q Consensus 397 ~aa~~i 402 (436)
.+|+-+
T Consensus 343 ~~a~v~ 348 (461)
T PLN02172 343 WVAAVL 348 (461)
T ss_pred HHHHHH
Confidence 877654
No 78
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.94 E-value=2.5e-26 Score=209.74 Aligned_cols=311 Identities=19% Similarity=0.290 Sum_probs=225.3
Q ss_pred CCCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceec-chhhhh--hcCcc------cccccc-------c----
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT-PLLAST--CVGTL------EFRSVA-------E---- 118 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~-~~~~~~--~~~~~------~~~~~~-------~---- 118 (436)
.+.-.+|||||.|..+++...+. .+.+|.+|..++..+|. |.+... ..+.+ .+..+. .
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 45678999999999998888765 56789999888777664 322211 11110 000000 0
Q ss_pred -chhhcchhhhcCCCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC-CCC----c
Q 013810 119 -PIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI-HGV----K 191 (436)
Q Consensus 119 -~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i-~g~----~ 191 (436)
.+..........-++-+.++ +|..||.+++.|.+. ||. +|.||.++||||.+|..... ... .
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~Ln---DG~--------~I~YdkcLIATG~~Pk~l~~~~~A~~evk 325 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILN---DGT--------TIGYDKCLIATGVRPKKLQVFEEASEEVK 325 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEec---CCc--------EeehhheeeecCcCcccchhhhhcCHHhh
Confidence 00000000122345666666 889999999999886 787 99999999999999987642 211 1
Q ss_pred cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 013810 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (436)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~ 271 (436)
..+..++.+.+...+.+-+. ..++|.|||+|..|.|+|+.|.+..+ ..+.+|+
T Consensus 326 ~kit~fr~p~DF~rlek~~a-----------------ek~siTIiGnGflgSELacsl~rk~r----------~~g~eV~ 378 (659)
T KOG1346|consen 326 QKITYFRYPADFKRLEKGLA-----------------EKQSITIIGNGFLGSELACSLKRKYR----------NEGVEVH 378 (659)
T ss_pred hheeEEecchHHHHHHHhhh-----------------hcceEEEEcCcchhhhHHHHHHHhhh----------ccCcEEE
Confidence 45566677777777766542 22489999999999999999987651 2457787
Q ss_pred EEeCC--CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC----CeEEEcCCcEEecceEEEecCCCCc-hhcccCC
Q 013810 272 LIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLD 343 (436)
Q Consensus 272 lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~----~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~ 343 (436)
-+... ..-.-+++.++++-.+.+++.||.++.+. |..+.. -.+.++||.++..|+|++|+|-.|| ++++..|
T Consensus 379 QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 379 QVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred EeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccc
Confidence 66553 22334567888899999999999999994 655532 2467899999999999999999999 6888899
Q ss_pred CCCCCC-CcEEeCCCCCCCCCCCEEEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhhcC-----Cceee
Q 013810 344 LPKSPG-GRIGIDEWLRVPSVQDVFAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLLAR-----NWCWF 412 (436)
Q Consensus 344 l~~~~~-G~i~vd~~~~~t~~~~Vya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-----~~~~~ 412 (436)
|++|+. |.+.||..|+ ...|||++||++.+.+. .|.+ +..++.+|+-.|+.|++||..... ..||+
T Consensus 459 LeiD~~lGGfrvnaeL~--ar~NvwvAGdaacF~D~~LGrR-RVehhdhavvSGRLAGENMtgAakpy~hqsmFWs 531 (659)
T KOG1346|consen 459 LEIDEKLGGFRVNAELK--ARENVWVAGDAACFEDGVLGRR-RVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWS 531 (659)
T ss_pred ceeecccCcEEeeheee--cccceeeecchhhhhcccccce-eccccccceeeceecccccccccCCccccceeee
Confidence 999876 7899999998 57899999999999885 4443 477888999999999999986543 35665
No 79
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.91 E-value=2.9e-24 Score=208.85 Aligned_cols=344 Identities=18% Similarity=0.155 Sum_probs=209.1
Q ss_pred ccccccccccccc--cccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHH
Q 013810 2 SLFKHLLRNPTAK--SYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMK 79 (436)
Q Consensus 2 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~ 79 (436)
+|...+.|.|.+. |.-.|.......+. ..-.+-....+.+-.... .... .......++|+|||||||||+||.
T Consensus 66 ~~p~~~gRvcp~~~~ceg~cv~~~~~~~v-~i~~le~~i~d~~~~~g~---i~~~-~~~~~tg~~VaviGaGPAGl~~a~ 140 (457)
T COG0493 66 NLPAITGRVCPLGNLCEGACVLGIEELPV-NIGALERAIGDKADREGW---IPGE-LPGSRTGKKVAVIGAGPAGLAAAD 140 (457)
T ss_pred CCccccCccCCCCCceeeeeeeccCCCch-hhhhHHHHHhhHHHHhCC---CCCC-CCCCCCCCEEEEECCCchHhhhHH
Confidence 5677788888888 87777655422222 111122222211111111 1111 222233489999999999999999
Q ss_pred hcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCc
Q 013810 80 GIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (436)
Q Consensus 80 ~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~ 159 (436)
.|++.|++|+++|+.+..... +..|.+.+. +...+.+....+....++.|+.+...+.+.....+
T Consensus 141 ~L~~~G~~Vtv~e~~~~~GGl-----l~yGIP~~k-l~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L--------- 205 (457)
T COG0493 141 DLSRAGHDVTVFERVALDGGL-----LLYGIPDFK-LPKDILDRRLELLERSGVEFKLNVRVGRDITLEEL--------- 205 (457)
T ss_pred HHHhCCCeEEEeCCcCCCcee-----EEecCchhh-ccchHHHHHHHHHHHcCeEEEEcceECCcCCHHHH---------
Confidence 999999999999998764432 122333332 22333333333455566888776444433221111
Q ss_pred ccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEEC
Q 013810 160 RTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237 (436)
Q Consensus 160 ~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG 237 (436)
.-.||++++|||+ .|+..++||.+ ++++...++..... ............|. ..+++|+|||
T Consensus 206 --------~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~--~~~~~~~~~~~~~~------~~gk~vvVIG 269 (457)
T COG0493 206 --------LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLN--KEVLGDFAEDRTPP------AKGKRVVVIG 269 (457)
T ss_pred --------HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHH--HHHhcccccccCCC------CCCCeEEEEC
Confidence 3457999999998 58888999985 44443333222111 11100000012222 3447999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC--C-CCCcccHHHHHHHHHHHHhcCCEEEec-c--------
Q 013810 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-ILSSFDDRLRHYATTQLSKSGVRLVRG-I-------- 305 (436)
Q Consensus 238 ~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~-~l~~~~~~~~~~~~~~l~~~gV~i~~~-~-------- 305 (436)
+|.+++|++....++|. .+|+.+.+. . -....+........+...+.|+..... .
T Consensus 270 gG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e 336 (457)
T COG0493 270 GGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNE 336 (457)
T ss_pred CCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecC
Confidence 99999999988877662 688877542 1 111122222344445566667665544 1
Q ss_pred ---eEEEeCCeEEEc--------------CC--cEEecceEEEecCCCCc--hh-cccCCCCCCCCCcEEeCCCCCCCCC
Q 013810 306 ---VKDVDSQKLILN--------------DG--TEVPYGLLVWSTGVGPS--TL-VKSLDLPKSPGGRIGIDEWLRVPSV 363 (436)
Q Consensus 306 ---v~~i~~~~v~~~--------------~g--~~i~~D~vi~a~G~~p~--~~-~~~~~l~~~~~G~i~vd~~~~~t~~ 363 (436)
|..+.-..+... .| .++++|+|+.++|+.++ .. ....++..+.+|.+.+|+.++.|+.
T Consensus 337 ~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~ 416 (457)
T COG0493 337 GGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSI 416 (457)
T ss_pred CCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccC
Confidence 222211111111 12 25889999999999988 22 2233677888999999999833999
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
|++||.||+..+ ..+...|+.+|+.+|+.|.
T Consensus 417 ~~vfa~gD~~~g---------~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 417 PGVFAGGDAVRG---------AALVVWAIAEGREAAKAID 447 (457)
T ss_pred CCeeeCceeccc---------hhhhhhHHhhchHHHHhhh
Confidence 999999999986 6789999999999999987
No 80
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.91 E-value=3.9e-24 Score=213.49 Aligned_cols=288 Identities=16% Similarity=0.229 Sum_probs=155.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh------------hhhhcCc----cccccc----------
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL------------ASTCVGT----LEFRSV---------- 116 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~------------~~~~~~~----~~~~~~---------- 116 (436)
++|+|||||++||++|+.|.+.|++++++|+++..+..-.. ....... ..+.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999999999999999999999999876543211 0110000 001111
Q ss_pred -ccchhhcchhhhcCCCcE---EEEeEeEeEeCCC-----CEEEEEEecCCcccCCCCceeeeccEEEEeCCC--CCCCC
Q 013810 117 -AEPIARIQPAISREPGSY---FFLSHCAGIDTDN-----HVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTF 185 (436)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~---~~~~~v~~id~~~-----~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~--~~~~~ 185 (436)
...+.++...+.+..+.. .+.++|++++... +.+.+....+|. ..+..||+||+|||. .|+.|
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~------~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGK------EETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTE------EEEEEECEEEEEE-SSSCESB-
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCe------EEEEEeCeEEEcCCCcCCCCCC
Confidence 112333333334433332 2345777776432 356665544443 125679999999996 58877
Q ss_pred C--CCCCc---cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhh
Q 013810 186 G--IHGVK---ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (436)
Q Consensus 186 ~--i~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~ 260 (436)
. +||.+ ..+++..++.+... -++|+|+|||+|.||+|+|.+|+..+
T Consensus 156 ~~~~~G~e~F~G~i~HS~~yr~~~~----------------------f~gKrVlVVG~g~Sg~DIa~el~~~a------- 206 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHSKDYRDPEP----------------------FKGKRVLVVGGGNSGADIAVELSRVA------- 206 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--TGGG----------------------GTTSEEEEESSSHHHHHHHHHHTTTS-------
T ss_pred hhhhhhhhcCCeeEEccccCcChhh----------------------cCCCEEEEEeCCHhHHHHHHHHHHhc-------
Confidence 4 88875 45677777665443 33469999999999999999998754
Q ss_pred hcCCCCccEEEEEeCCC--CCCcc-----------------------cHHHHHHH-------------------------
Q 013810 261 YSHVKDYIHVTLIEANE--ILSSF-----------------------DDRLRHYA------------------------- 290 (436)
Q Consensus 261 ~~~~~~~~~V~lv~~~~--~l~~~-----------------------~~~~~~~~------------------------- 290 (436)
.+|++..|.. +++.+ +..+.+.+
T Consensus 207 -------~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~ 279 (531)
T PF00743_consen 207 -------KKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQ 279 (531)
T ss_dssp -------CCEEEECC-----------------------------------------------------------------
T ss_pred -------CCeEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5666666531 22211 00111111
Q ss_pred --------HHHHHhcCCEEEecceEEEeCCeEEEcCCcEE-ecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCC
Q 013810 291 --------TTQLSKSGVRLVRGIVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRV 360 (436)
Q Consensus 291 --------~~~l~~~gV~i~~~~v~~i~~~~v~~~~g~~i-~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~ 360 (436)
...+....|++. ..|+++++++|+++||+++ ++|.||+|||+..+ +++.+.-+... ++.+..-.++-.
T Consensus 280 ~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~-~~~~~LYk~vfp 357 (531)
T PF00743_consen 280 HPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVD-DNRVRLYKHVFP 357 (531)
T ss_dssp -------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S--SSSSSEETTTEE
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 011112223322 2367788899999999875 69999999999988 77776434332 223333333211
Q ss_pred C--CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 361 P--SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 361 t--~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
+ ..|++..+|=+... ......+..|++.+|+-+.
T Consensus 358 ~~~~~ptLafIG~~~~~---------g~~fp~~ElQArw~a~v~s 393 (531)
T PF00743_consen 358 PNLDHPTLAFIGLVQPF---------GSIFPIFELQARWAARVFS 393 (531)
T ss_dssp TETTSTTEEESS-SBSS---------S-HHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccc---------ccccccccccccccccccc
Confidence 2 45889999987542 2345678899998887554
No 81
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.90 E-value=8.9e-24 Score=211.96 Aligned_cols=346 Identities=18% Similarity=0.208 Sum_probs=205.8
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
.+|.+++.|.|..+|.-.|...+..++...-+ .....-+.+ -..++-..-++.....++|.|||.|||||+||-.
T Consensus 1729 nnfpeftgrvcpapcegactlgiie~pv~iks-ie~aiid~a----f~egwm~p~pp~~rtg~~vaiigsgpaglaaadq 1803 (2142)
T KOG0399|consen 1729 NNFPEFTGRVCPAPCEGACTLGIIEPPVGIKS-IECAIIDKA----FEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQ 1803 (2142)
T ss_pred CCCccccCccCCCCcCcceeeecccCCccccc-hhhHHHHHH----HHhcCCccCCcccccCcEEEEEccCchhhhHHHH
Confidence 36899999999999999998888776664322 111111111 1122211122333456899999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|-+.|+.|+|+|+++..+.. ...|.+... +...+.+....+....++.|+...-.+ +.+.+ ++-
T Consensus 1804 lnk~gh~v~vyer~dr~ggl-----l~ygipnmk-ldk~vv~rrv~ll~~egi~f~tn~eig-----k~vs~----d~l- 1867 (2142)
T KOG0399|consen 1804 LNKAGHTVTVYERSDRVGGL-----LMYGIPNMK-LDKFVVQRRVDLLEQEGIRFVTNTEIG-----KHVSL----DEL- 1867 (2142)
T ss_pred HhhcCcEEEEEEecCCcCce-----eeecCCccc-hhHHHHHHHHHHHHhhCceEEeecccc-----ccccH----HHH-
Confidence 99999999999999875432 111222221 112223333345566788887653222 11322 121
Q ss_pred cCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
.-.+|++|+|+|++ |+.+++||.+ .++...-.+.+.. .+.+ .-....+.. -..++|+|+||||
T Consensus 1868 -------~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~n--tk~l----ld~~~d~~~--~~~~gkkvivigg 1932 (2142)
T KOG0399|consen 1868 -------KKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKN--TKSL----LDSVLDGNY--ISAKGKKVIVIGG 1932 (2142)
T ss_pred -------hhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHh--HHhh----hccccccce--eccCCCeEEEECC
Confidence 34699999999985 8999999987 3333222221111 1111 111110100 1145679999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE---EEeCCC-------CCCccc----HHHH-HHHHHHHH----hcCC
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT---LIEANE-------ILSSFD----DRLR-HYATTQLS----KSGV 299 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~---lv~~~~-------~l~~~~----~~~~-~~~~~~l~----~~gV 299 (436)
|.+|-+|...-.++|. +.|. |+-.++ ..|..+ -+.. ..+++..- ..-|
T Consensus 1933 gdtg~dcigtsvrhg~-------------~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~v 1999 (2142)
T KOG0399|consen 1933 GDTGTDCIGTSVRHGC-------------KSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSV 1999 (2142)
T ss_pred CCccccccccchhhcc-------------ceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeee
Confidence 9999999888777662 2232 221111 111111 0000 11111110 0000
Q ss_pred ---EEEec---ceEEEeCCeEEEc-------------C-CcEEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeC-C
Q 013810 300 ---RLVRG---IVKDVDSQKLILN-------------D-GTEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-E 356 (436)
Q Consensus 300 ---~i~~~---~v~~i~~~~v~~~-------------~-g~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd-~ 356 (436)
+|+.+ .|+.++--+|+++ + .+.++||+||+|.|+... ....+++++.|+++.|..- .
T Consensus 2000 ltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~ 2079 (2142)
T KOG0399|consen 2000 LTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKD 2079 (2142)
T ss_pred eeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCc
Confidence 11111 1333322222221 1 245899999999999876 4688899999999888763 4
Q ss_pred CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.+. |++++|||+|||..+ ..++.+|+++|+.+|+.+-..
T Consensus 2080 ~y~-t~v~~vfaagdcrrg---------qslvvwai~egrq~a~~vd~~ 2118 (2142)
T KOG0399|consen 2080 SYS-TDVAKVFAAGDCRRG---------QSLVVWAIQEGRQAARQVDEL 2118 (2142)
T ss_pred ccc-ccccceeecccccCC---------ceEEEEEehhhhHHHHHHHHH
Confidence 466 899999999999987 678999999999999998643
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.90 E-value=2.1e-22 Score=207.05 Aligned_cols=346 Identities=11% Similarity=0.112 Sum_probs=179.4
Q ss_pred Cccccccc-cccccccccCCCCCccCCCcccccccccccccCC---C--Ccc--ccccccC----CCCCCCCCCCcEEEE
Q 013810 1 MSLFKHLL-RNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDAS---P--STV--QLTQYSG----LGPTKANEKPRVVVL 68 (436)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~--~~~~~~~----~~~~~~~~~~~VvII 68 (436)
+||...|. |+|. .|+..|-+. . ......+.+.++..+.. | .+. ...++.. .+.+...+.++|+||
T Consensus 313 NP~p~~~G~RVCp-~CE~aC~r~-~-dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVV 389 (1028)
T PRK06567 313 NPMVAATGHRICN-DCSKACIYQ-K-QDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVT 389 (1028)
T ss_pred CCChHhhCCccCc-chHHHhcCC-C-CCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEE
Confidence 46778888 9999 699999766 2 22334444555443310 0 000 0001111 011223457899999
Q ss_pred CCchHHHHHHHhcccCCCeEEEEcCCCcc--------------eecchhhhhh---c-Cccccc---ccccchhhc-chh
Q 013810 69 GSGWAGCRLMKGIDTSLYDVVCVSPRNHM--------------VFTPLLASTC---V-GTLEFR---SVAEPIARI-QPA 126 (436)
Q Consensus 69 GgG~AGl~aA~~L~~~g~~v~lie~~~~~--------------~~~~~~~~~~---~-~~~~~~---~~~~~~~~~-~~~ 126 (436)
|||||||+||.+|++.|++|+|+|+.+.. .|.+.+.... . |...+. ++.....+. ...
T Consensus 390 GaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k~~l~~i~~i 469 (1028)
T PRK06567 390 GLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDKNNLDILRLI 469 (1028)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchHHHHHHHHHH
Confidence 99999999999999999999999986421 1222222221 1 111111 111111111 111
Q ss_pred hhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHH
Q 013810 127 ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQ 204 (436)
Q Consensus 127 ~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~ 204 (436)
+....++.++.+...+.+.....+ ....||+|+||||+ .|+.+++||.+ .+++...++....
T Consensus 470 l~~g~~v~~~~gv~lG~dit~edl----------------~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l 533 (1028)
T PRK06567 470 LERNNNFKYYDGVALDFNITKEQA----------------FDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTL 533 (1028)
T ss_pred HhcCCceEEECCeEECccCCHHHH----------------hhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHH
Confidence 112234555444333222211111 14569999999999 79999999976 3444333322111
Q ss_pred HHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHH-----------------------HHH----HH
Q 013810 205 EIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF-----------------------IMR----DV 257 (436)
Q Consensus 205 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~-----------------------~~~----~~ 257 (436)
...+. ......+. ...+++|+|||||++|+|+|.....+ ..+ ++
T Consensus 534 ~~~~~----~~~~~~~~-----~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~ 604 (1028)
T PRK06567 534 QSGGA----FLKNSNTN-----MVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHA 604 (1028)
T ss_pred hhccc----ccccccCc-----ccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHH
Confidence 11000 00000000 01235899999999999999854431 000 00
Q ss_pred Hhhh--c-------CCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC---Ce---EEE---
Q 013810 258 RQRY--S-------HVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QK---LIL--- 316 (436)
Q Consensus 258 ~~~~--~-------~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~---~~---v~~--- 316 (436)
+... . ..+....|++++|.. -+|...-. .+.+.+ ..+.||+++... ..++.. +. +++
T Consensus 605 r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~~~-~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~ 682 (1028)
T PRK06567 605 KLFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYKLN-HEELIY-ALALGVDFKENMQPLRINVDKYGHVESVEFENR 682 (1028)
T ss_pred HhhcchhccchhhhhhccCCceEEEecCChhhCCCCCCC-HHHHHH-HHHcCcEEEecCCcEEEEecCCCeEEEEEEEEE
Confidence 1000 0 000112299999853 34443100 122222 345699998873 444421 11 111
Q ss_pred ------------c---------------CCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEe
Q 013810 317 ------------N---------------DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369 (436)
Q Consensus 317 ------------~---------------~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~ 369 (436)
. ...+++||.||+|+|..|+.... + .++-..
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~------~----------------~~~s~~ 740 (1028)
T PRK06567 683 NRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD------E----------------DKYSYF 740 (1028)
T ss_pred ecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc------c----------------cccccc
Confidence 0 11359999999999999993221 0 012234
Q ss_pred ccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 370 GDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 370 GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
||+-.. +..+...|+.+|+.++.+|..+.
T Consensus 741 ~d~~~~--------f~Gtvv~A~as~k~~~~~i~~~l 769 (1028)
T PRK06567 741 GDCNPK--------YSGSVVKALASSKEGYDAINKKL 769 (1028)
T ss_pred cCCCCc--------cccHHHHHHHHHHhHHHHHHHHH
Confidence 444432 23467899999999999996543
No 83
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.88 E-value=4.1e-21 Score=179.34 Aligned_cols=363 Identities=18% Similarity=0.210 Sum_probs=211.4
Q ss_pred cccccCCCCCccCCCcccccccccccccCCCCcccc-----ccccCCCCCCCCCCCcEEEECCchHHHHHHHhcccCCCe
Q 013810 13 AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQL-----TQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYD 87 (436)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~ 87 (436)
+|.|.....+++-+.+|.|..- ++..+....++ +...++........++++|||||+||++||+.|++.|++
T Consensus 73 ln~y~~E~aniREqcswvH~~d---AtekA~dllr~avakar~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~ 149 (622)
T COG1148 73 LNPYYLEIANIREQCSWVHMDD---ATEKAKDLLRMAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFK 149 (622)
T ss_pred eCHHHhhhhhHhhcceeeccch---HHHHHHHHHHHHHHHHhhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCe
Confidence 6778888899999999987755 32222222222 223344444455668999999999999999999999999
Q ss_pred EEEEcCCCcceecch-hhhhhcCccccccc-ccchhhcchhhhcCCCcEEEEe-EeEeEeCCCCEEEEEEe---------
Q 013810 88 VVCVSPRNHMVFTPL-LASTCVGTLEFRSV-AEPIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETV--------- 155 (436)
Q Consensus 88 v~lie~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~--------- 155 (436)
|+|+|+++.++.+-. +.... +..+. .--+......+...+++.+++- +|..++..-+.++++-.
T Consensus 150 v~LVEKepsiGGrmak~~k~F----P~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpryVdd~ 225 (622)
T COG1148 150 VYLVEKEPSIGGRMAKLNKTF----PTNDCSICILAPKMVEVSNHPNIELITYAEVEEVSGSVGNFTVKIEKKPRYVDDK 225 (622)
T ss_pred EEEEecCCcccccHHhhhccC----CCcccchhhccchhhhhccCCceeeeeeeeeeeecccccceEEEEeccccccccc
Confidence 999999988755411 11000 00000 0011111122233344443331 33332211110000000
Q ss_pred ----------------------------------------------------------cCC--cccCCCCceeeeccEEE
Q 013810 156 ----------------------------------------------------------TDE--LRTLEPWKFKISYDKLV 175 (436)
Q Consensus 156 ----------------------------------------------------------~~g--~~~~~~~~~~~~~d~lV 175 (436)
..+ ....++++.+++...+|
T Consensus 226 CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGaII 305 (622)
T COG1148 226 CTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGAII 305 (622)
T ss_pred ccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCCcEEEEEeceEE
Confidence 000 00112234478899999
Q ss_pred EeCCCCCCCCCCC-----CCccccccccChHHHHHHHHHHHHhccccCCCC----CChhhhcccCcEEEE---CCCh---
Q 013810 176 IALGAEASTFGIH-----GVKENATFLREVHHAQEIRRKLLLNLMLSDVPG----ISEEEKSRLLHCVVV---GGGP--- 240 (436)
Q Consensus 176 iAtG~~~~~~~i~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~vvVi---G~G~--- 240 (436)
+|||-.++.+.-. |.-+++++. .++.+.+ ...-|. +.+.+.+.+++|+.| |+-+
T Consensus 306 vAtGy~~~Da~~k~EyGYG~~~nVIT~------lElErml-----~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 306 VATGYKPFDATRKEEYGYGKYPNVITN------LELERML-----NPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEccccccCcchhhhcCCCCCcchhhH------HHHHHHh-----ccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 9999987655322 112334433 2222222 111111 233344666788776 5433
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe---CC
Q 013810 241 -----TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD---SQ 312 (436)
Q Consensus 241 -----~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~---~~ 312 (436)
+-+-++..|.. +..++++++. .+|+++..+- +.++...-++..+.-.+.||+++.+++.+|. ++
T Consensus 375 ~n~YCSrvCCm~slKq--A~~Ike~~Pd----~~v~I~YmDi--RafG~~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~ 446 (622)
T COG1148 375 GNPYCSRVCCMVSLKQ--AQLIKERYPD----TDVTIYYMDI--RAFGKDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKK 446 (622)
T ss_pred CChhhHHHHHHHHHhh--hhhhhhcCCC----cceeEEEEEe--eccCccHHHHHHhhhhhhchhhhcCChHHheeCCCC
Confidence 22333333322 2344555554 8899888752 2233333344444445789999999765553 33
Q ss_pred e--EEEcC---C--cEEecceEEEecCCCCc----hhcccCCCCCCCCCcEEeC-CCCCC--CCCCCEEEeccccccccC
Q 013810 313 K--LILND---G--TEVPYGLLVWSTGVGPS----TLVKSLDLPKSPGGRIGID-EWLRV--PSVQDVFAVGDCSGYLES 378 (436)
Q Consensus 313 ~--v~~~~---g--~~i~~D~vi~a~G~~p~----~~~~~~~l~~~~~G~i~vd-~~~~~--t~~~~Vya~GD~~~~~~~ 378 (436)
. |..+| | .++++|+|++++|+.|. .+.+.+||+.+++||+... +.++. ++.++||.+|-|.+
T Consensus 447 ~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg---- 522 (622)
T COG1148 447 KLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG---- 522 (622)
T ss_pred eeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC----
Confidence 3 33333 2 46899999999999996 2677889999999998864 66653 67899999999988
Q ss_pred CCCccCCccHHHHHHHHHHHHhhhhhhcCCcee
Q 013810 379 TGKTVLPALAQVSYEQLHLFQKPSFLLARNWCW 411 (436)
Q Consensus 379 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 411 (436)
|+-+..++.||..||.........-.|
T Consensus 523 ------PkdI~~siaqa~aAA~kA~~~l~~g~~ 549 (622)
T COG1148 523 ------PKDIADSIAQAKAAAAKAAQLLGRGEV 549 (622)
T ss_pred ------CccHHHHHHHhHHHHHHHHHHhhcCce
Confidence 899999999999998777655443333
No 84
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.87 E-value=4.7e-23 Score=182.73 Aligned_cols=188 Identities=28% Similarity=0.368 Sum_probs=126.0
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecc-hhhh-hhcCcccccccccchh--hcchhhhcCCCcEE-EEe
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP-LLAS-TCVGTLEFRSVAEPIA--RIQPAISREPGSYF-FLS 138 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~ 138 (436)
|||||||||||++||.+|++.+.+++|||+.+...+.. .+.. ................ .+... ....++.+ +..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQ-LKNRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHH-HHHHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccc-cccceEEEeecc
Confidence 69999999999999999999999999999887544421 1111 1100000000000000 11111 12356777 456
Q ss_pred EeEeEeCCCCEE-----EEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHh
Q 013810 139 HCAGIDTDNHVV-----HCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (436)
Q Consensus 139 ~v~~id~~~~~v-----~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (436)
++..++...+.+ .......+. ..++.||+||||||+.|+.|++||. +.........++..+...+
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~--- 149 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGD------GREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELL--- 149 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTT------EEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHS---
T ss_pred ccccccccccccccCcccceeeccCC------ceEecCCeeeecCccccceeecCCC-ccccccccccccccccccc---
Confidence 889999887743 221111221 2289999999999999999999997 3444556677777766553
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHH
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~ 293 (436)
...++|+|||
T Consensus 150 --------------~~~~~v~VvG-------------------------------------------------------- 159 (201)
T PF07992_consen 150 --------------ESPKRVAVVG-------------------------------------------------------- 159 (201)
T ss_dssp --------------STTSEEEEES--------------------------------------------------------
T ss_pred --------------cccccccccc--------------------------------------------------------
Confidence 1223888888
Q ss_pred HHhcCCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCchhc-ccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccc
Q 013810 294 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV-KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372 (436)
Q Consensus 294 l~~~gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~-~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~ 372 (436)
.+++ +..+++++++|++.||+++| |+.|||||+|||
T Consensus 160 ------------------------------------------~~~l~~~~~~~~~~~g~i~vd~~~~-t~~~~Iya~GD~ 196 (201)
T PF07992_consen 160 ------------------------------------------TEFLAEKLGVELDENGFIKVDENLQ-TSVPGIYAAGDC 196 (201)
T ss_dssp ------------------------------------------TTTSTHHTTSTBTTTSSBEEBTTSB-BSSTTEEE-GGG
T ss_pred ------------------------------------------ccccccccccccccccccccccccc-cccccccccccc
Confidence 4344 78899999999999999999 799999999999
Q ss_pred ccc
Q 013810 373 SGY 375 (436)
Q Consensus 373 ~~~ 375 (436)
++.
T Consensus 197 a~~ 199 (201)
T PF07992_consen 197 AGI 199 (201)
T ss_dssp BEE
T ss_pred ccc
Confidence 985
No 85
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=162.26 Aligned_cols=255 Identities=20% Similarity=0.323 Sum_probs=164.5
Q ss_pred cEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcch--hhhcCCCc---EEE
Q 013810 64 RVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQP--AISREPGS---YFF 136 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~ 136 (436)
+.+|||||.||.+||..|+. ...+|+|+..++..--...+ ......+..+.. +-....+- .++
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~----------~~i~~ylekfdv~eq~~~elg~~f~~~~ 70 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNY----------QKIGQYLEKFDVKEQNCHELGPDFRRFL 70 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhH----------HHHHHHHHhcCccccchhhhcccHHHHH
Confidence 36899999999999999986 45679999876542111000 000000110000 00000111 222
Q ss_pred EeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccc
Q 013810 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 137 ~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
..|..++..++.+.++ +|. .+.|++|++|||++|..- ..|.+..++..++.+.+..++.++
T Consensus 71 -~~v~~~~s~ehci~t~---~g~--------~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl------ 131 (334)
T KOG2755|consen 71 -NDVVTWDSSEHCIHTQ---NGE--------KLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKL------ 131 (334)
T ss_pred -HhhhhhccccceEEec---CCc--------eeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHH------
Confidence 2377788888888776 676 899999999999998753 233456778888888898888887
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC-CcccHHHHHHHHHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-SSFDDRLRHYATTQL 294 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l-~~~~~~~~~~~~~~l 294 (436)
.+.|.|.|+|.|-++.|++.++.. .+|++....+ +- .-++|.+.+.+...+
T Consensus 132 -----------~kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~~IsaTFfdpGaaef~~i~l 184 (334)
T KOG2755|consen 132 -----------VKAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDEGISATFFDPGAAEFYDINL 184 (334)
T ss_pred -----------hhcceEEEEecCchhHHHHHHhhc----------------ceeEEEecchhhhhcccCccHHHHhHhhh
Confidence 556799999999999999999964 6777766643 21 224555555554444
Q ss_pred HhcC------------CEEEe------------------------------------cceEEEeC----CeEEEc---CC
Q 013810 295 SKSG------------VRLVR------------------------------------GIVKDVDS----QKLILN---DG 319 (436)
Q Consensus 295 ~~~g------------V~i~~------------------------------------~~v~~i~~----~~v~~~---~g 319 (436)
...+ ++.+. +.+..+.. ..+... ++
T Consensus 185 ~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~ 264 (334)
T KOG2755|consen 185 RADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKM 264 (334)
T ss_pred hcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhccccccccccc
Confidence 1100 00000 00000000 001110 11
Q ss_pred --cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccc
Q 013810 320 --TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 320 --~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~ 375 (436)
..+.||.+++++|..|| +++-...+...++|.+.||..|+ |+.|+|||+||++..
T Consensus 265 ~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~-tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 265 ADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAME-TSLPDVFAAGDVCTT 322 (334)
T ss_pred ccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhcc-ccccceeeecceecc
Confidence 25789999999999999 66655567777888999999999 999999999999884
No 86
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.82 E-value=7.1e-19 Score=172.92 Aligned_cols=174 Identities=18% Similarity=0.172 Sum_probs=112.1
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCe-EEEEcCCCcceecc---hhhhhhcC----------ccc-----ccccccch
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTP---LLASTCVG----------TLE-----FRSVAEPI 120 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~~~~~~---~~~~~~~~----------~~~-----~~~~~~~~ 120 (436)
+.+++|+|||||++||++|..|++.|.+ ++|+|++...+... .+.+..+. .+. +.... ++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~-~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA-EI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc-cH
Confidence 4568999999999999999999999998 99999997543221 11111111 000 00000 12
Q ss_pred hhcchhhhcC----CCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC--CCCCCCCCCCc--
Q 013810 121 ARIQPAISRE----PGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHGVK-- 191 (436)
Q Consensus 121 ~~~~~~~~~~----~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~--~~~~~~i~g~~-- 191 (436)
.++.....+. ..+.+... ++...+.+.+.+.+... ++.+ .++.+|+||+|||. .|+.|.|+|.+
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~-~~~~------~~~~a~~vV~ATG~~~~P~iP~~~G~~~f 157 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTS-DGGT------GELTADFVVVATGHLSEPYIPDFAGLDEF 157 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEc-CCCe------eeEecCEEEEeecCCCCCCCCCCCCccCC
Confidence 2222222222 23333322 33444444556666543 3331 02679999999996 69999999986
Q ss_pred -cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEE
Q 013810 192 -ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHV 270 (436)
Q Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V 270 (436)
..+++..++.+...+ ++|+|+|||+|.||+++|.+|++.+ .+|
T Consensus 158 ~g~~~HS~~~~~~~~~----------------------~GKrV~VIG~GaSA~di~~~l~~~g--------------a~v 201 (443)
T COG2072 158 KGRILHSADWPNPEDL----------------------RGKRVLVIGAGASAVDIAPELAEVG--------------ASV 201 (443)
T ss_pred CceEEchhcCCCcccc----------------------CCCeEEEECCCccHHHHHHHHHhcC--------------Cee
Confidence 345566555554443 3459999999999999999999876 899
Q ss_pred EEEeCCC
Q 013810 271 TLIEANE 277 (436)
Q Consensus 271 ~lv~~~~ 277 (436)
+++.|++
T Consensus 202 t~~qRs~ 208 (443)
T COG2072 202 TLSQRSP 208 (443)
T ss_pred EEEecCC
Confidence 9999964
No 87
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=4.6e-19 Score=171.73 Aligned_cols=232 Identities=15% Similarity=0.116 Sum_probs=145.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhh--------h-----------hhcC---cccccc---
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA--------S-----------TCVG---TLEFRS--- 115 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~--------~-----------~~~~---~~~~~~--- 115 (436)
..++|+|||||||||.+|+.|.+.|++++++|+.+.++...... . .+.+ .+...+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 35899999999999999999999999999999998764321111 0 0111 111111
Q ss_pred ---cccchhhcchhhhcCCCc---EEEEeEeEeEeCCC-CEEEEEEecCCcccCCCCceeeeccEEEEeCCCC--CCCCC
Q 013810 116 ---VAEPIARIQPAISREPGS---YFFLSHCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--ASTFG 186 (436)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~---~~~~~~v~~id~~~-~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~--~~~~~ 186 (436)
....+.+++..+++..++ .....+|..++... +.+.+....+++. ..+.-||.|++|||.. |+.|.
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-----~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-----IEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-----eeEEEeeEEEEcccCcCCCCCCc
Confidence 011334444455555553 22334677777766 5666654333321 1267799999999986 88888
Q ss_pred CCCC--c---cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 013810 187 IHGV--K---ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (436)
Q Consensus 187 i~g~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~ 261 (436)
++|. + ...++..++..... ..+++|+|||+|+||.|++.+++..+
T Consensus 160 ~~g~~~~~f~G~~iHS~~Yk~~e~----------------------f~~k~VlVIG~g~SG~DIs~d~~~~a-------- 209 (448)
T KOG1399|consen 160 IPGPGIESFKGKIIHSHDYKSPEK----------------------FRDKVVLVVGCGNSGMDISLDLLRVA-------- 209 (448)
T ss_pred CCCCchhhcCCcceehhhccCccc----------------------ccCceEEEECCCccHHHHHHHHHHhc--------
Confidence 8873 2 34556555543333 23359999999999999999998876
Q ss_pred cCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEeCCeE-EEcCCcEEecceEEEecCCCCc-hhc
Q 013810 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKL-ILNDGTEVPYGLLVWSTGVGPS-TLV 339 (436)
Q Consensus 262 ~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~v-~~~~g~~i~~D~vi~a~G~~p~-~~~ 339 (436)
++|++..+.......... ....++..+.. |+.+++++. .+.++....+|.+|+|+|+.-. +++
T Consensus 210 ------k~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl 274 (448)
T KOG1399|consen 210 ------KEVHLSVVSPKVHVEPPE--------ILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFL 274 (448)
T ss_pred ------cCcceeeecccccccccc--------eeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEeeccee
Confidence 677776531000000000 00113333333 777777774 4456677899999999999876 555
Q ss_pred ccC
Q 013810 340 KSL 342 (436)
Q Consensus 340 ~~~ 342 (436)
...
T Consensus 275 ~~~ 277 (448)
T KOG1399|consen 275 ETL 277 (448)
T ss_pred ccC
Confidence 544
No 88
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.79 E-value=3.3e-18 Score=155.59 Aligned_cols=302 Identities=18% Similarity=0.145 Sum_probs=166.4
Q ss_pred CCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
.++|+|||+||||+.+|..|.+ .+++|+|+|+.+..... ..++++...+........+.. .++.....|+.+-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL-vRyGVAPDHpEvKnvintFt~----~aE~~rfsf~gNv 94 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL-VRYGVAPDHPEVKNVINTFTK----TAEHERFSFFGNV 94 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce-eeeccCCCCcchhhHHHHHHH----HhhccceEEEecc
Confidence 4689999999999999999976 46899999998764332 223444444444333222222 2334445554431
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhcccc
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (436)
-. .+.+.+..+ +-.||++|||+|+. ++.++|||.+ .++++.+.+ ..+.+-+ ....
T Consensus 95 ~v-----G~dvsl~eL------------~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Saref---v~Wyng~---P~~~ 151 (468)
T KOG1800|consen 95 KV-----GRDVSLKEL------------TDNYDAVVLAYGADGDRRLDIPGEELSGVISAREF---VGWYNGL---PENQ 151 (468)
T ss_pred ee-----cccccHHHH------------hhcccEEEEEecCCCCcccCCCCcccccceehhhh---hhhccCC---Cccc
Confidence 11 112222211 44699999999995 8889999986 455543322 2222211 1111
Q ss_pred -CCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHH--------hhhcCCCCccEEEEEeCCCCC-Ccc-----
Q 013810 218 -DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR--------QRYSHVKDYIHVTLIEANEIL-SSF----- 282 (436)
Q Consensus 218 -~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~--------~~~~~~~~~~~V~lv~~~~~l-~~~----- 282 (436)
..|+ -...+|+|||.|++++++|..|.....+..+ -..-....-++|+|+-|..++ ..|
T Consensus 152 ~le~d------ls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKEL 225 (468)
T KOG1800|consen 152 NLEPD------LSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKEL 225 (468)
T ss_pred ccCcc------cccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHH
Confidence 1122 2245899999999999999998653222111 001111234688888874211 111
Q ss_pred ----------------------------c-----HHHHHHHHHHHHhc---------CCE------------EEec--ce
Q 013810 283 ----------------------------D-----DRLRHYATTQLSKS---------GVR------------LVRG--IV 306 (436)
Q Consensus 283 ----------------------------~-----~~~~~~~~~~l~~~---------gV~------------i~~~--~v 306 (436)
+ .++.+.+.+.+.++ +.+ |..+ .|
T Consensus 226 RE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v 305 (468)
T KOG1800|consen 226 REVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGV 305 (468)
T ss_pred HHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccc
Confidence 0 11222222222220 111 0000 00
Q ss_pred EEEe--CC------eEEEcCCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCC---CCCCCEEEecccccc
Q 013810 307 KDVD--SQ------KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV---PSVQDVFAVGDCSGY 375 (436)
Q Consensus 307 ~~i~--~~------~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~---t~~~~Vya~GD~~~~ 375 (436)
..+. .+ .+.+.+-++++|++++.++|++..++.. ++..|..-.+.-|.+.++ --.|++|++|-|..+
T Consensus 306 ~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~--gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~G 383 (468)
T KOG1800|consen 306 SGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDS--GIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHG 383 (468)
T ss_pred cceEEEeeeehhhcccccCceEeeccceeEeeeeecccccCC--CCCcccccCcccCCCceEEeeccCCceEEEeeeccC
Confidence 0000 00 1111222479999999999998765433 333333222333333332 135999999999997
Q ss_pred ccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 376 LESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 376 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
| ...+..+++++..+|..|..+..
T Consensus 384 P--------~GvIattm~dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 384 P--------TGVIATTMQDAFEVADTIVQDLK 407 (468)
T ss_pred C--------cceeeehhhhHHHHHHHHHHHHH
Confidence 5 45677889999999998876654
No 89
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.77 E-value=2.8e-19 Score=158.78 Aligned_cols=167 Identities=21% Similarity=0.223 Sum_probs=97.0
Q ss_pred EEECCchHHHHHHHhcccCCCe-EEEEcCCCcceec------------chhhhhhcCcccc----------------ccc
Q 013810 66 VVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFT------------PLLASTCVGTLEF----------------RSV 116 (436)
Q Consensus 66 vIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~~~~~------------~~~~~~~~~~~~~----------------~~~ 116 (436)
+|||||||||++|.+|.+.|.+ ++|||+++..+.. |.......+..+. ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 9999998654221 0000000000000 001
Q ss_pred ccchhhcchhhhcCCCcEEEE-eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC--CCCCCCCCC-Ccc
Q 013810 117 AEPIARIQPAISREPGSYFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHG-VKE 192 (436)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~--~~~~~~i~g-~~~ 192 (436)
...+.++...+.+..++.+.. .+|++++.+.+.+.+.. .++. .+.+|+||+|||. .|+.|++|| ...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~-~~~~--------~~~a~~VVlAtG~~~~p~~p~~~g~~~~ 151 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTT-RDGR--------TIRADRVVLATGHYSHPRIPDIPGSAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEE-TTS---------EEEEEEEEE---SSCSB---S-TTGGCS
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEE-Eecc--------eeeeeeEEEeeeccCCCCcccccccccc
Confidence 112333444445555666544 58888887776666654 3444 7899999999996 788899999 444
Q ss_pred ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEE
Q 013810 193 NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL 272 (436)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~l 272 (436)
..++..++.+... -++++|+|||+|.+|+|+|..|++.+ .+|++
T Consensus 152 ~~~h~~~~~~~~~----------------------~~~k~V~VVG~G~SA~d~a~~l~~~g--------------~~V~~ 195 (203)
T PF13738_consen 152 PIIHSADWRDPED----------------------FKGKRVVVVGGGNSAVDIAYALAKAG--------------KSVTL 195 (203)
T ss_dssp EEEEGGG-STTGG----------------------CTTSEEEEE--SHHHHHHHHHHTTTC--------------SEEEE
T ss_pred ceEehhhcCChhh----------------------cCCCcEEEEcChHHHHHHHHHHHhhC--------------CEEEE
Confidence 4455444332221 23369999999999999999998765 89999
Q ss_pred EeCCC
Q 013810 273 IEANE 277 (436)
Q Consensus 273 v~~~~ 277 (436)
+.|++
T Consensus 196 ~~R~~ 200 (203)
T PF13738_consen 196 VTRSP 200 (203)
T ss_dssp EESS-
T ss_pred EecCC
Confidence 99974
No 90
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=6.4e-16 Score=142.89 Aligned_cols=296 Identities=16% Similarity=0.148 Sum_probs=176.6
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcceecchh--hhhhcCccccccc--------------------
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVGTLEFRSV-------------------- 116 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~~~~~~~--~~~~~~~~~~~~~-------------------- 116 (436)
+...|++.||-||+-|+.|..|.+.+ .++..+|+++.+-|+|.. ++.-...+...|+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 34589999999999999999998854 789999999999888642 2211111111111
Q ss_pred --------------ccchhhcchhhhcCCCcEEEEeEeE---eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 117 --------------AEPIARIQPAISREPGSYFFLSHCA---GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 117 --------------~~~~~~~~~~~~~~~~~~~~~~~v~---~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
..++.++..+.+..........+|+ .++.+..........++. .+.++.|||++|
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~--------~y~ar~lVlg~G 154 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGT--------VYRARNLVLGVG 154 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCc--------EEEeeeEEEccC
Confidence 1122333222222221112334666 455444333222223444 789999999999
Q ss_pred CCCCCCC-CCCCc-cccccccChHH-HHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHH
Q 013810 180 AEASTFG-IHGVK-ENATFLREVHH-AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (436)
Q Consensus 180 ~~~~~~~-i~g~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~ 256 (436)
.+|..|+ +.... +.+++..++.. -.++. ..++|+|||+|-+|.|+-..|..-.
T Consensus 155 ~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~---------------------~~~~V~ViG~GQSAAEi~~~Ll~~~--- 210 (436)
T COG3486 155 TQPYIPPCFRSLIGERVFHSSEYLERHPELL---------------------QKRSVTVIGSGQSAAEIFLDLLNSQ--- 210 (436)
T ss_pred CCcCCChHHhCcCccceeehHHHHHhhHHhh---------------------cCceEEEEcCCccHHHHHHHHHhCC---
Confidence 9999985 33332 46676655432 11111 1125999999999999998886422
Q ss_pred HHhhhcCCCCccEEEEEeCCC-CCCc---------ccHH-----------HHHHH-------------------HHHHH-
Q 013810 257 VRQRYSHVKDYIHVTLIEANE-ILSS---------FDDR-----------LRHYA-------------------TTQLS- 295 (436)
Q Consensus 257 ~~~~~~~~~~~~~V~lv~~~~-~l~~---------~~~~-----------~~~~~-------------------~~~l~- 295 (436)
.....++.++.|+. .+|. |.|+ .++.+ -+.|.
T Consensus 211 -------~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~ 283 (436)
T COG3486 211 -------PPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYE 283 (436)
T ss_pred -------CCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHH
Confidence 11234688888853 3221 1222 22111 11111
Q ss_pred ------hcCCEEEecc-eEEEeCCe---EEEc-------CCcEEecceEEEecCCCCc--hhcccCC--CCCCCCCcEEe
Q 013810 296 ------KSGVRLVRGI-VKDVDSQK---LILN-------DGTEVPYGLLVWSTGVGPS--TLVKSLD--LPKSPGGRIGI 354 (436)
Q Consensus 296 ------~~gV~i~~~~-v~~i~~~~---v~~~-------~g~~i~~D~vi~a~G~~p~--~~~~~~~--l~~~~~G~i~v 354 (436)
+..|.++.++ |..++..+ +.+. +.+++++|.||+|||++.. +|+..+. +..|++|...|
T Consensus 284 ~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I 363 (436)
T COG3486 284 QSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVI 363 (436)
T ss_pred HHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEe
Confidence 2345666663 77776432 4431 2347899999999999865 4666554 66788999999
Q ss_pred CCCCCCCCC----CCEEEeccccccccCCCCccCCccHHHHHHHHHHH
Q 013810 355 DEWLRVPSV----QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLF 398 (436)
Q Consensus 355 d~~~~~t~~----~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~a 398 (436)
+..+++... -.||+-|-+...+... -|.+...|.+.+.++
T Consensus 364 ~~dY~v~~~~~~~~~ifvqn~e~htHGig----~pdLsl~a~Raa~I~ 407 (436)
T COG3486 364 GRDYRVLWDGPGKGRIFVQNAELHTHGIG----APDLSLGAWRAAVIL 407 (436)
T ss_pred cCceeeecCCCCcceEEEecccccccccC----CccchHHHHHHHHHH
Confidence 988665322 2599999887643321 155666677766654
No 91
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.73 E-value=2.9e-17 Score=155.93 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=102.3
Q ss_pred CcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcceecchh--hhhhcCccccccc-----------------------
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVGTLEFRSV----------------------- 116 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~~~~~~~--~~~~~~~~~~~~~----------------------- 116 (436)
+|+++||.||++|+.|..|.+.+ .++..+|+++.+.|+|.+ .+.-......+++
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~ 82 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLY 82 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HH
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChh
Confidence 68999999999999999998865 899999999999887643 2222221111111
Q ss_pred -----------ccchhhcchhhhcCCCc-EEEEeEeEeEeCCCC----EEEEEEe-cCCcccCCCCceeeeccEEEEeCC
Q 013810 117 -----------AEPIARIQPAISREPGS-YFFLSHCAGIDTDNH----VVHCETV-TDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 117 -----------~~~~~~~~~~~~~~~~~-~~~~~~v~~id~~~~----~v~~~~~-~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
...+.++..++...... ..+..+|+.|++... .+.+.+. .+|. ...+.++.||||||
T Consensus 83 ~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~------~~~~~ar~vVla~G 156 (341)
T PF13434_consen 83 EFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGD------GETYRARNVVLATG 156 (341)
T ss_dssp HHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-------EEEEEESEEEE---
T ss_pred hhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCC------eeEEEeCeEEECcC
Confidence 11344444555555444 445568888886543 2444431 2232 12889999999999
Q ss_pred CCCCCCCCCC-C--ccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHH
Q 013810 180 AEASTFGIHG-V--KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (436)
Q Consensus 180 ~~~~~~~i~g-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~ 256 (436)
..|..|..-. . .+.+++..++....+-. ...++|+|||||.+|.|++..|.+.+
T Consensus 157 ~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~--------------------~~~~~V~VVGgGQSAAEi~~~L~~~~--- 213 (341)
T PF13434_consen 157 GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQS--------------------LAGKRVAVVGGGQSAAEIFLDLLRRG--- 213 (341)
T ss_dssp -EE---GGGGGGTT-TTEEEGGGHHHHHT-------------------------EEEEEE-SSHHHHHHHHHHHHH----
T ss_pred CCCCCCcchhhcCCCCCEEEehHhhhccccc--------------------cCCCeEEEECCcHhHHHHHHHHHhCC---
Confidence 9888875332 2 25677776665433210 23359999999999999999998765
Q ss_pred HHhhhcCCCCccEEEEEeCCC
Q 013810 257 VRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 257 ~~~~~~~~~~~~~V~lv~~~~ 277 (436)
+..+|+++.|+.
T Consensus 214 ---------~~~~V~~i~R~~ 225 (341)
T PF13434_consen 214 ---------PEAKVTWISRSP 225 (341)
T ss_dssp ---------TTEEEEEEESSS
T ss_pred ---------CCcEEEEEECCC
Confidence 237999999974
No 92
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.70 E-value=3.3e-16 Score=151.70 Aligned_cols=39 Identities=13% Similarity=-0.024 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhcc-cCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGID-TSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~-~~g~~v~lie~~~~~~~ 99 (436)
..++|+|||||||||+||.+|. +.|++|+|+|+.+.++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 4578999999999999999864 67999999999987654
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.55 E-value=6.6e-14 Score=136.00 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=104.5
Q ss_pred EEECCChHHHHHH-HHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe
Q 013810 234 VVVGGGPTGVEFS-GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD 310 (436)
Q Consensus 234 vViG~G~~g~e~A-~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~ 310 (436)
+|++.+.+|+|.+ ..++++.. .-+.+|+++... +.++.. ++.+.+.+.+++.|++++.+. |.+++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~----------~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEE----------ALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHH----------HHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 7788999999999 66654310 113899999874 555553 788888999999999999984 77775
Q ss_pred --CCeEE---EcCCc--EEecceEEEecCCCCch-hcc--------cCCCCC---------------CCC----CcEEeC
Q 013810 311 --SQKLI---LNDGT--EVPYGLLVWSTGVGPST-LVK--------SLDLPK---------------SPG----GRIGID 355 (436)
Q Consensus 311 --~~~v~---~~~g~--~i~~D~vi~a~G~~p~~-~~~--------~~~l~~---------------~~~----G~i~vd 355 (436)
++++. ..+|+ .+++|.||+|+|..+.. +.. -++|++ .+. =.|.+|
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d 366 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD 366 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC
Confidence 33332 33443 58999999999987652 310 012222 000 015667
Q ss_pred CCCCC------CCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 356 EWLRV------PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 356 ~~~~~------t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+.|+. +..+||||+|++.++++.--+ -.-...|+..|..||++|...
T Consensus 367 ~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~---~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 367 ATLRPLDSQGGPVIENLYAAGAVLGGYDPIRE---GCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CCcCcccCCCCeeccceEEeeehhcCCchHHh---CCCchhHHHHHHHHHHHHHHh
Confidence 66663 458999999999998653110 112347889999999988754
No 94
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.30 E-value=6.8e-10 Score=106.18 Aligned_cols=173 Identities=17% Similarity=0.132 Sum_probs=96.6
Q ss_pred CcEEEECCchHHHHHHHhcccC---CCeEEEEcCCCcce----ecchhhh----hhcCc-----cc----ccc-------
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMV----FTPLLAS----TCVGT-----LE----FRS------- 115 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~---g~~v~lie~~~~~~----~~~~~~~----~~~~~-----~~----~~~------- 115 (436)
++|+|||||++|+.+|.+|.+. ...|.|||+.+.++ |.+..+. +..+. ++ +.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 6899999999999999999762 22399999876542 2211100 00000 00 000
Q ss_pred --------------------cccchhhcchhhhcCCC---cEEEEeEeEeEeCC-CCEEEEEEecCCcccCCCCceeeec
Q 013810 116 --------------------VAEPIARIQPAISREPG---SYFFLSHCAGIDTD-NHVVHCETVTDELRTLEPWKFKISY 171 (436)
Q Consensus 116 --------------------~~~~~~~~~~~~~~~~~---~~~~~~~v~~id~~-~~~v~~~~~~~g~~~~~~~~~~~~~ 171 (436)
+..++.+....+.+... +.++..+++++... +....+....+|. ...+
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~--------~~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP--------SEIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCC--------eeee
Confidence 00112222222222222 66777777777655 2223333345665 7789
Q ss_pred cEEEEeCCCCCCCCCC-----CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHH
Q 013810 172 DKLVIALGAEASTFGI-----HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246 (436)
Q Consensus 172 d~lViAtG~~~~~~~i-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A 246 (436)
|-+|+|||..+-.++. +|.... +.+...+..+. .+ +...+|+|+|+|.+.++..
T Consensus 154 d~~Vlatgh~~~~~~~~~~~~~~~~~~---ia~~~~~~~ld----------~v--------~~~drVli~GsgLt~~D~v 212 (474)
T COG4529 154 DIIVLATGHSAPPADPAARDLKGSPRL---IADPYPANALD----------GV--------DADDRVLIVGSGLTSIDQV 212 (474)
T ss_pred eEEEEeccCCCCCcchhhhccCCCcce---eccccCCcccc----------cc--------cCCCceEEecCCchhHHHH
Confidence 9999999986544332 222111 11111111111 11 2223799999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
..|.+.+ ...+||++.|.
T Consensus 213 ~~l~~~g------------h~g~It~iSRr 230 (474)
T COG4529 213 LVLRRRG------------HKGPITAISRR 230 (474)
T ss_pred HHHhccC------------CccceEEEecc
Confidence 9998755 33688888884
No 95
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.25 E-value=6.1e-11 Score=87.99 Aligned_cols=74 Identities=34% Similarity=0.566 Sum_probs=64.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+|+|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.+++.||+++++. +.++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--------------~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--------------KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--------------cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 5899999999999999999877 999999995 56788999999999999999999999995 8888
Q ss_pred eC--Ce--EEEcCC
Q 013810 310 DS--QK--LILNDG 319 (436)
Q Consensus 310 ~~--~~--v~~~~g 319 (436)
+. ++ |+++||
T Consensus 67 ~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 67 EKDGDGVEVTLEDG 80 (80)
T ss_dssp EEETTSEEEEEETS
T ss_pred EEeCCEEEEEEecC
Confidence 64 33 666665
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.14 E-value=2.2e-10 Score=106.83 Aligned_cols=112 Identities=16% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh--------------hhhhcC-----------------
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL--------------ASTCVG----------------- 109 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~--------------~~~~~~----------------- 109 (436)
+.++|+|||||||||.||..+++.|.+|+|||+.+.+.-.-++ ...+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 4589999999999999999999999999999987543110000 000000
Q ss_pred --------------------ccccc-ccccchhhcchhhhcCCCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCce
Q 013810 110 --------------------TLEFR-SVAEPIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKF 167 (436)
Q Consensus 110 --------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~ 167 (436)
..... +-..++-+.+..-.+..++.++.. +|.+++.++..+.+.+ .+|.
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t-~~g~-------- 152 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT-SSGE-------- 152 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEc-CCCC--------
Confidence 00000 111122222222344567777765 8999998876665543 3554
Q ss_pred eeeccEEEEeCCCC
Q 013810 168 KISYDKLVIALGAE 181 (436)
Q Consensus 168 ~~~~d~lViAtG~~ 181 (436)
++.+|.+|||||..
T Consensus 153 ~i~~d~lilAtGG~ 166 (408)
T COG2081 153 TVKCDSLILATGGK 166 (408)
T ss_pred EEEccEEEEecCCc
Confidence 79999999999954
No 97
>PRK09897 hypothetical protein; Provisional
Probab=99.13 E-value=6.3e-10 Score=111.39 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=97.7
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcce----ecch------hhh---------------hhcCc-----
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMV----FTPL------LAS---------------TCVGT----- 110 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~----~~~~------~~~---------------~~~~~----- 110 (436)
++|+||||||+|+++|..|.+. ..+|+|||++..++ |.+. +.. ++...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 6899999999999999999764 35899999975432 2221 000 00000
Q ss_pred --------------cccc-ccccchhhcchhhh---cCCC--cEEEE-eEeEeEeCCCCEEEEEEecCCcccCCCCceee
Q 013810 111 --------------LEFR-SVAEPIARIQPAIS---REPG--SYFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKI 169 (436)
Q Consensus 111 --------------~~~~-~~~~~~~~~~~~~~---~~~~--~~~~~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~ 169 (436)
...+ ....++......+. ...+ +.++. .+|++++.....+.+....++. .+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~--------~i 153 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLP--------SE 153 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCe--------EE
Confidence 0000 00001111111111 1222 45543 4899998777766665433334 78
Q ss_pred eccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHH
Q 013810 170 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249 (436)
Q Consensus 170 ~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l 249 (436)
.+|+||+|||..+..+ .++. . .+....+ .... ....| ..+|+|+|.|.++++++..|
T Consensus 154 ~aD~VVLAtGh~~p~~-~~~~-~-~yi~~pw-~~~~----------~~~i~---------~~~V~I~GtGLt~iD~v~~L 210 (534)
T PRK09897 154 TFDLAVIATGHVWPDE-EEAT-R-TYFPSPW-SGLM----------EAKVD---------ACNVGIMGTSLSGLDAAMAV 210 (534)
T ss_pred EcCEEEECCCCCCCCC-Chhh-c-cccCCCC-cchh----------hcCCC---------CCeEEEECCCHHHHHHHHHH
Confidence 9999999999753211 1111 1 1111111 1100 00111 24899999999999999999
Q ss_pred HHHHHHHHH--------hhhcCCCCccEEEEEeCC
Q 013810 250 SDFIMRDVR--------QRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 250 ~~~~~~~~~--------~~~~~~~~~~~V~lv~~~ 276 (436)
...+. .+. -.|......-+|+++.|.
T Consensus 211 t~~gG-~F~~~~~~~~~l~y~~sg~~~~I~a~SRr 244 (534)
T PRK09897 211 AIQHG-SFIEDDKQHVVFHRDNASEKLNITLMSRT 244 (534)
T ss_pred HhcCC-ceeccCCCcceeeecCCCCCceEEEEeCC
Confidence 85421 111 111112244688888875
No 98
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.99 E-value=7.8e-10 Score=107.39 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=27.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
|||+|||||||||.||+.|++.|.+|+|+|+++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~ 35 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRV 35 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 68999999999999999999999999999998654
No 99
>PLN02463 lycopene beta cyclase
Probab=98.93 E-value=6.4e-09 Score=102.58 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=71.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---hh--cCc-------cc-----c-----ccccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---TC--VGT-------LE-----F-----RSVAE 118 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---~~--~~~-------~~-----~-----~~~~~ 118 (436)
..+||+||||||||+++|..|++.|++|+|||+.+...+...+.. .. .+. .. . .....
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 458999999999999999999999999999999764332110000 00 000 00 0 00000
Q ss_pred --------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 119 --------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 119 --------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
.+.+.........++.++.++|++++.....+.+.. .+|. ++.+|+||.|+|.....
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~-~dG~--------~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVC-DDGV--------KIQASLVLDATGFSRCL 171 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEE-CCCC--------EEEcCEEEECcCCCcCc
Confidence 111111111234578888889999987666555443 3555 79999999999987643
No 100
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.91 E-value=3.9e-09 Score=103.40 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=36.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
+++||+||||||||++||+.|++.|++|+|+|+.+...+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k 41 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK 41 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence 4589999999999999999999999999999998776554
No 101
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.90 E-value=1.1e-07 Score=91.64 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHhcCCEEEec-ceEEEe--CCe---EEEcCC--cEEecceEEEecCCC-CchhcccC--------CCC
Q 013810 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDG--TEVPYGLLVWSTGVG-PSTLVKSL--------DLP 345 (436)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~i~~~-~v~~i~--~~~---v~~~~g--~~i~~D~vi~a~G~~-p~~~~~~~--------~l~ 345 (436)
+..+.+.+.+.+++.|++++.+ +|.+++ +++ |.+.++ .++.+|.+|+|+|.. ...+.+.+ +++
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~ 341 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLD 341 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCC
Confidence 3577788889999999999998 577764 332 444555 479999999999988 55443322 333
Q ss_pred C----CC---------------CCcEEeCCCCCC----CCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhh
Q 013810 346 K----SP---------------GGRIGIDEWLRV----PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPS 402 (436)
Q Consensus 346 ~----~~---------------~G~i~vd~~~~~----t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 402 (436)
+ +. .=.|.+|+.+|. ...+|+||+|-+.++.+.--. -.-...|+..|-.||++|
T Consensus 342 v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~---gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 342 VLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE---GCGSGVAVSTALHAAEQI 418 (419)
T ss_pred cCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc---CCCchhHHHHHHHHHHhh
Confidence 3 10 112778999883 138999999999987663111 112347899999999887
Q ss_pred h
Q 013810 403 F 403 (436)
Q Consensus 403 ~ 403 (436)
.
T Consensus 419 ~ 419 (419)
T TIGR03378 419 I 419 (419)
T ss_pred C
Confidence 3
No 102
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.86 E-value=7.3e-09 Score=97.28 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=32.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+||+|||||+||+++|+.|++.|++|+|||+.+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 58999999999999999999999999999998654
No 103
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.84 E-value=2.5e-08 Score=98.88 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=33.4
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+++||+||||||||++||..|++.|++|+|+|+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 456899999999999999999999999999999874
No 104
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.84 E-value=1e-08 Score=101.38 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=34.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.++||+||||||||++||..|++.|++|+|||+.+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 3589999999999999999999999999999987654
No 105
>PRK10015 oxidoreductase; Provisional
Probab=98.82 E-value=1.5e-08 Score=100.16 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=34.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.++||+||||||||++||+.|++.|++|+|||+.+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999988654
No 106
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.81 E-value=5.2e-08 Score=98.08 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=39.0
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.||.+.| |++||+||+|+|+..-. .|. .........|.-.|+.|++++...
T Consensus 333 ~GGi~vd~~~~-t~I~GLyAaGE~a~~g~-hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 333 CGGISVDDHGR-TTVPGLYAIGEVACTGL-HGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred cCCEEECCCCc-ccCCCEEECcccccccc-CcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 46799999999 89999999999974211 111 111334567888889998888643
No 107
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.80 E-value=1.4e-08 Score=96.71 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=67.0
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEc-CCCcceec---chhhhhhcC--------------------c---------
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVS-PRNHMVFT---PLLASTCVG--------------------T--------- 110 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie-~~~~~~~~---~~~~~~~~~--------------------~--------- 110 (436)
||+|||||.||++||+.+++.|.+|+|+. +.+.+... |.+.+...+ .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 79999999999999999999999999993 33322211 221111100 0
Q ss_pred --cccccc--cc---chh-hcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC
Q 013810 111 --LEFRSV--AE---PIA-RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (436)
Q Consensus 111 --~~~~~~--~~---~~~-~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~ 180 (436)
+..... .. .+. .+...+...+++.+++++|+.+..+++.+.-....+|. .+.+|.+|+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~--------~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGE--------EIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSE--------EEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCC--------EEecCEEEEeccc
Confidence 000000 00 111 11222445588999999999999888877655556776 8999999999998
No 108
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.78 E-value=2.9e-08 Score=99.73 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=69.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC-cceec---chhhhhh----------cCcc----------ccc--
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN-HMVFT---PLLASTC----------VGTL----------EFR-- 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~-~~~~~---~~~~~~~----------~~~~----------~~~-- 114 (436)
.++||+|||||+||++||..+++.|.+|+|||++. .+++. |...+.. .|.. .+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999873 32221 1111111 0000 000
Q ss_pred ------cccc-----c---h-hhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 115 ------SVAE-----P---I-ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 115 ------~~~~-----~---~-~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
.... + + ..+...+....++.++.++|+.+..+++.+.-....+|. .+.++.||+|||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~--------~I~Ak~VIlATG 154 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGL--------EFRAKAVVLTTG 154 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCC--------EEECCEEEEeeC
Confidence 0000 0 0 111111223457888888998887666655422334565 899999999999
Q ss_pred CC
Q 013810 180 AE 181 (436)
Q Consensus 180 ~~ 181 (436)
..
T Consensus 155 TF 156 (618)
T PRK05192 155 TF 156 (618)
T ss_pred cc
Confidence 74
No 109
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.76 E-value=5.9e-07 Score=92.14 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=40.3
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.|.|.||.+.| |+.|++||+|+|++... .|. +.-......|+-.|++|++++..+.
T Consensus 358 ~GGi~vd~~~~-t~i~GLyAaGe~~~~g~-hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 358 MGGIETDQNCE-TRIKGLFAVGECSSVGL-HGANRLGSNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred CCCEEECCCCc-cccCCEEeccccccccc-CCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 56799999999 99999999999975211 121 1112355678888999999887653
No 110
>PLN02697 lycopene epsilon cyclase
Probab=98.75 E-value=6.9e-08 Score=96.87 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=67.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce-----ecchh-----hhhhcCc--------ccccc--ccc--
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV-----FTPLL-----ASTCVGT--------LEFRS--VAE-- 118 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~-----~~~~~-----~~~~~~~--------~~~~~--~~~-- 118 (436)
..+||+||||||||+++|..|++.|++|+|||+...+. |...+ ....... ..... ...
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 35899999999999999999999999999999753221 00000 0000000 00000 000
Q ss_pred ------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCC
Q 013810 119 ------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (436)
Q Consensus 119 ------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~ 182 (436)
.+.+.........++.++..+|+.+..+.+.+.+....+|. ++.++.||+|+|...
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~--------~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGR--------VIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCc--------EEECCEEEECCCcCh
Confidence 01111111123457888888998887655444332223555 799999999999865
No 111
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.75 E-value=4e-08 Score=96.36 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 4458999999999999999999999999999998753
No 112
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.74 E-value=4.4e-08 Score=95.84 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=30.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
+||+||||||||++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999987
No 113
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.74 E-value=1.6e-07 Score=94.80 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=30.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||||||+|.|||+||+.+++ |.+|+||||.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 4799999999999999999987 899999998764
No 114
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.73 E-value=4.8e-08 Score=93.59 Aligned_cols=56 Identities=13% Similarity=-0.005 Sum_probs=38.8
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
-|.|.||.+.| |+.|++||||.|+..--+.-.+-..++...++--|..+|++|...
T Consensus 341 mGGI~vD~~Gr-Tsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 341 MGGIAVDANGR-TSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred cccEEECCCCc-ccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 36799999999 999999999999873111112222344455666677778888753
No 115
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.73 E-value=4.5e-08 Score=89.56 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=34.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..+||+||||||||++||++|++.|++|+|||+...+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~ 60 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999998764
No 116
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.72 E-value=4.4e-08 Score=95.93 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=65.9
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh---hh---------hh----cCccccc--cc---------
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL---AS---------TC----VGTLEFR--SV--------- 116 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~---~~---------~~----~~~~~~~--~~--------- 116 (436)
||+||||||||+++|..|++.|++|+|||+++...+...+ .. .. .+..... ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 6999999999999999999999999999987654321000 00 00 0000000 00
Q ss_pred ---ccchhhcchhhhcCCCcEEEEeEeEeEeCC-CCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCC
Q 013810 117 ---AEPIARIQPAISREPGSYFFLSHCAGIDTD-NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (436)
Q Consensus 117 ---~~~~~~~~~~~~~~~~~~~~~~~v~~id~~-~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~ 182 (436)
...+.+.........++.++.++|..++.+ ...+.+. ..++. ++++|+||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~-~~~g~--------~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVY-CAGGQ--------RIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEE-eCCCC--------EEEeCEEEECCCCch
Confidence 000111111112234677777788888765 4444333 23554 799999999999876
No 117
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.71 E-value=5.3e-08 Score=96.28 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=32.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+||+||||||||+++|..|++.|++|+|||+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 58999999999999999999999999999998764
No 118
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.71 E-value=3.5e-07 Score=88.21 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHHhcCCEEEec-ceEEEe--CCe---EEEcCCcEEecceEEEecCCCCchhcccCCC
Q 013810 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (436)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~i~~~-~v~~i~--~~~---v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l 344 (436)
+..+.+.+.+.+++.|++++.+ +|++++ +++ |.+.+|+ +.+|.||+|+|.....++..++.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccc
Confidence 3577788888889999999999 588886 333 6778887 99999999999876666666655
No 119
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=1.1e-06 Score=90.37 Aligned_cols=35 Identities=34% Similarity=0.384 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCC---CeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL---YDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g---~~v~lie~~~~ 96 (436)
..||||||||.|||+||+.+++.| .+|+||||...
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 479999999999999999999988 89999998754
No 120
>PRK06847 hypothetical protein; Provisional
Probab=98.70 E-value=4.8e-08 Score=95.23 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++++|+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357899999999999999999999999999998764
No 121
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.70 E-value=3e-08 Score=84.80 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=38.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC 107 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~ 107 (436)
..||+||||||+||+||++|++.|++|+|||++-+++.-.+..+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGml 75 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGML 75 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccc
Confidence 3689999999999999999999999999999998765543333333
No 122
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.70 E-value=6.4e-08 Score=88.23 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..+||+|||||||||+||+.|++.|++|+|||++..+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG 57 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 35899999999999999999999999999999987653
No 123
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.68 E-value=2.1e-06 Score=87.93 Aligned_cols=56 Identities=18% Similarity=0.088 Sum_probs=40.0
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCCc-cCCccHHHHHHHHHHHHhhhhhhc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT-VLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~-~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.|.|.+|.+.+ |++|++||+|+|++... .|.. .-......|+-.|++|++++..+.
T Consensus 357 ~GGi~~d~~~~-t~i~GLyAaGe~a~~G~-hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 357 MGGIETDINCE-TRIKGLFAVGECASVGL-HGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred CCCeeECcCcc-cccCCeEeeecccccCc-CCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 45699999999 99999999999974211 1111 112456678888999999887653
No 124
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.68 E-value=1.2e-07 Score=96.44 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
...||||||+|.|||+||+.+++ |.+|+||||.+..
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~ 43 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLK 43 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCC
Confidence 35799999999999999999975 9999999987643
No 125
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.65 E-value=1.6e-07 Score=91.33 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=68.1
Q ss_pred cEEEECCchHHHHHHHhc--ccCCCeEEEEcCCCcceecch--hh----------hhhcCccc--------cc----c--
Q 013810 64 RVVVLGSGWAGCRLMKGI--DTSLYDVVCVSPRNHMVFTPL--LA----------STCVGTLE--------FR----S-- 115 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L--~~~g~~v~lie~~~~~~~~~~--~~----------~~~~~~~~--------~~----~-- 115 (436)
||+|||||+||+++|..| ++.|.+|+|||+++...+... +. ........ .. .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 789999999998765422111 00 00000000 00 0
Q ss_pred c-cc---chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCC
Q 013810 116 V-AE---PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (436)
Q Consensus 116 ~-~~---~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~ 183 (436)
. .. .+.+.........++.++..+|++|+.....+.+. ..+|. +++++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~-~~~g~--------~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVV-LADGR--------TIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEE-ECCCC--------EEEeeEEEECCCcccc
Confidence 0 00 11111111112346777888999998877744443 24665 8999999999996544
No 126
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.64 E-value=1.3e-07 Score=92.73 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=33.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+..+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4457999999999999999999999999999998754
No 127
>PRK06834 hypothetical protein; Provisional
Probab=98.64 E-value=8.1e-08 Score=96.44 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 347999999999999999999999999999998754
No 128
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.64 E-value=1.4e-07 Score=92.42 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+++|+||||||||+++|+.|++.|++|+|+|+.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 479999999999999999999999999999988653
No 129
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.64 E-value=2.2e-07 Score=94.50 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=39.2
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.||.+.| |++|++||+|+|+..-. .|. +.-......|+-.|+.|++++...
T Consensus 353 ~GGi~vd~~~~-t~I~GLyAaGE~a~~g~-hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 353 CGGVMVDLHGR-TDLDGLYAIGEVSYTGL-HGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred cCCeeECCCCc-cccCCEEeccccccccc-CCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 46699999999 89999999999974211 111 111245567888899999888654
No 130
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.64 E-value=3e-07 Score=86.53 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=73.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCcc-----cHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQL 294 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~------------l~~~-----~~~~~~~~~~~l 294 (436)
+|+|||+|+.|+++|..|++.+ .+|+|+++.+. .+.+ +.++.+.+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--------------LKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 6999999999999999998765 88999997431 1222 256778888888
Q ss_pred HhcCCEEEecceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 295 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 295 ~~~gV~i~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
++.|++++..++.+++.. .+.+.+++++.+|.+|+|+|..|+
T Consensus 68 ~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 68 VKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred HHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 999999998768877653 466677789999999999999886
No 131
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.64 E-value=2.2e-08 Score=102.71 Aligned_cols=39 Identities=23% Similarity=0.117 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
...||||||+|+||++||+.+++.|.+|+|+||......
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 458999999999999999999999999999999876543
No 132
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.63 E-value=1.3e-07 Score=92.75 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+||+||||||||++||..|++.|++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4899999999999999999999999999998743
No 133
>PRK06184 hypothetical protein; Provisional
Probab=98.63 E-value=8.1e-08 Score=97.25 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+++|+||||||+||++|..|++.|++|+|||+.+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999987543
No 134
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.62 E-value=2.9e-07 Score=99.10 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=39.7
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.||.+++ |++||+||+|||+... .++...|.-.|+.|+.++..+
T Consensus 361 ~GGi~vd~~~~-T~v~GLfAaGE~a~~~--------~nsl~~a~v~G~~Ag~~a~~~ 408 (897)
T PRK13800 361 ASGVWVDEHAR-TTVPGLYAAGDLACVP--------HNYMIGAFVFGDLAGAHAAGT 408 (897)
T ss_pred cceEEecCCCc-ccCCCeEechhccCcc--------hhhhhhHHHhHHHHHHHHHHH
Confidence 47799999999 9999999999998742 456677888899988888654
No 135
>PRK07236 hypothetical protein; Provisional
Probab=98.61 E-value=1.8e-07 Score=91.60 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++.++|+|||||+|||++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3458999999999999999999999999999998764
No 136
>PLN02661 Putative thiazole synthesis
Probab=98.60 E-value=3.9e-07 Score=85.65 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccC-CCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~~~~ 97 (436)
...||+|||||+||++||+.|++. |++|+|||+....
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 457999999999999999999975 8999999998654
No 137
>PRK09126 hypothetical protein; Provisional
Probab=98.60 E-value=2e-07 Score=91.41 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=32.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+++|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 58999999999999999999999999999998764
No 138
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.59 E-value=7.5e-07 Score=86.07 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcE-EecceEEEecCCCCchhcccCCCCCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTE-VPYGLLVWSTGVGPSTLVKSLDLPKS 347 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~~l~~~ 347 (436)
++...+.+.+.++|++++.++ |++++. + .+.+.+|++ ++|+.||.|.|.-...+++..|++.+
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~ 223 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcc
Confidence 556667777888899999995 887753 3 345567776 99999999999999888888877653
No 139
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.59 E-value=1.7e-07 Score=91.56 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3799999999999999999999999999999764
No 140
>PLN02815 L-aspartate oxidase
Probab=98.57 E-value=4.4e-06 Score=85.53 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..||||||+|.|||+||+.+++.| +|+||||.+..
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 479999999999999999999999 99999987643
No 141
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.57 E-value=2.8e-07 Score=90.85 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+||+|||||++|+++|+.|++.|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3689999999999999999999999999999875
No 142
>PRK07190 hypothetical protein; Provisional
Probab=98.56 E-value=1.9e-07 Score=93.64 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+||||||+||++|..|++.|.+|+|||+.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 347999999999999999999999999999998864
No 143
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.56 E-value=1.4e-07 Score=83.32 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=31.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..|+|||+|+||++||..|+..|.+|+|+||+.-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence 46999999999999999999999999999987543
No 144
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.55 E-value=1.7e-07 Score=92.29 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=31.3
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~ 96 (436)
+||+||||||||+++|..|++.| ++|+|||+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 78999999999999999999985 99999998754
No 145
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.55 E-value=3.6e-07 Score=90.89 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=70.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+||++.+.+.-. . + ..+........+..++.++.+ +|
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------~-~-----~~~~~~~~~~l~~~GI~i~~~~~V 221 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR---------E-E-----PSVAALAKQYMEEDGITFLLNAHT 221 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC---------C-C-----HHHHHHHHHHHHHcCCEEEcCCEE
Confidence 468999999999999999999999999999998653110 0 0 111112222234567888765 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++.+...+.+.. +++ ++.+|.||+|+|..|+..
T Consensus 222 ~~i~~~~~~v~v~~--~g~--------~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 222 TEVKNDGDQVLVVT--EDE--------TYRFDALLYATGRKPNTE 256 (438)
T ss_pred EEEEecCCEEEEEE--CCe--------EEEcCEEEEeeCCCCCcc
Confidence 88887655555432 454 799999999999998764
No 146
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.55 E-value=3.3e-06 Score=85.47 Aligned_cols=55 Identities=15% Similarity=0.022 Sum_probs=38.2
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.||.+.+ |++|++||+|+|+..- ..|. +.-......++-.|+.|++++...
T Consensus 341 ~GGi~vd~~~~-t~I~GLyAaGE~a~~G-~hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 341 MGGIAVDADGR-SSLPGLWAAGEVASTG-LHGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cCCEEECCCCc-cccCCEEecccccccC-CCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 46699999999 8999999999997310 1111 111234556778889999888654
No 147
>PRK08244 hypothetical protein; Provisional
Probab=98.55 E-value=1.9e-07 Score=94.43 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+++|+||||||+||++|..|++.|++|+|||+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 37899999999999999999999999999998754
No 148
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.55 E-value=1.7e-07 Score=95.66 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=60.2
Q ss_pred cEEEECCChHHHHHHHH-------HHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEe
Q 013810 232 HCVVVGGGPTGVEFSGE-------LSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVR 303 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~-------l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~ 303 (436)
.++++|++..+++++.. +.+++ .+|++.... ..+..++..+...+.+.+++.||+++.
T Consensus 162 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~ 227 (557)
T PRK07843 162 NMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLL 227 (557)
T ss_pred cccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEe
Confidence 78999999999998764 44444 455554332 233445667778888889999999999
Q ss_pred cc-eEEEeC--C---eEEEc-CCc--EEecc-eEEEec-CCCCc
Q 013810 304 GI-VKDVDS--Q---KLILN-DGT--EVPYG-LLVWST-GVGPS 336 (436)
Q Consensus 304 ~~-v~~i~~--~---~v~~~-~g~--~i~~D-~vi~a~-G~~p~ 336 (436)
++ +.++.. + +|+.. +++ ++.++ .||+|+ |+.+|
T Consensus 228 ~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n 271 (557)
T PRK07843 228 NTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHN 271 (557)
T ss_pred CCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcC
Confidence 94 666642 2 33342 443 47785 577755 46666
No 149
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.54 E-value=2.5e-07 Score=90.51 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
.++|+||||||+|+++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 478999999999999999999999999999997
No 150
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.53 E-value=3.1e-07 Score=90.21 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..+|+|||||+||+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 478999999999999999999999999999987643
No 151
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.52 E-value=5e-07 Score=89.00 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
.+||+||||||+|+++|..|++.|++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 479999999999999999999999999999985
No 152
>PRK08013 oxidoreductase; Provisional
Probab=98.52 E-value=4.9e-07 Score=88.89 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 47999999999999999999999999999998764
No 153
>PRK11445 putative oxidoreductase; Provisional
Probab=98.52 E-value=4.2e-07 Score=87.62 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+||||||||+++|..|++. ++|+|||+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 37999999999999999999999 99999998764
No 154
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.52 E-value=4.7e-07 Score=88.88 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccC---CCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~---g~~v~lie~~ 94 (436)
++++|+||||||||+++|+.|++. |++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 458999999999999999999998 9999999994
No 155
>PRK07045 putative monooxygenase; Reviewed
Probab=98.52 E-value=4.2e-07 Score=88.99 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=33.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+++|+||||||||+++|+.|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4579999999999999999999999999999987654
No 156
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.49 E-value=6.4e-07 Score=89.59 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=70.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+|+++.+.+.. .. + ..+.+......+..++.++.+ +|
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~---------~~-d-----~e~~~~l~~~L~~~GI~i~~~~~V 234 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP---------GE-D-----EDIAHILREKLENDGVKIFTGAAL 234 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc---------cc-c-----HHHHHHHHHHHHHCCCEEEECCEE
Confidence 36899999999999999999999999999998765311 00 0 011111122233468888876 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+...+.+.. +++ +.++.+|.||+|+|..|+..
T Consensus 235 ~~i~~~~~~v~~~~--~g~------~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 235 KGLNSYKKQALFEY--EGS------IQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred EEEEEcCCEEEEEE--CCc------eEEEEeCEEEEecCCccCCC
Confidence 88887666555542 332 12689999999999988764
No 157
>PRK06185 hypothetical protein; Provisional
Probab=98.49 E-value=4.1e-07 Score=89.73 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=33.2
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...+||+|||||++|+++|+.|++.|++|+|||+.+
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 345899999999999999999999999999999875
No 158
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.48 E-value=7.9e-07 Score=87.19 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+||+||||||||+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35899999999999999999999999999999875
No 159
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.48 E-value=4.7e-07 Score=67.01 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=51.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeEe
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCAG 142 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 142 (436)
+|+|||||+.|+.+|..|++.|.+|+||++.+.+. +.+. ...........+..+++++.+ .+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~~~-------------~~~~~~~~~~l~~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PGFD-------------PDAAKILEEYLRKRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TTSS-------------HHHHHHHHHHHHHTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hhcC-------------HHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 58999999999999999999999999999988743 1111 111222222234468998876 7788
Q ss_pred EeCCCCEEE
Q 013810 143 IDTDNHVVH 151 (436)
Q Consensus 143 id~~~~~v~ 151 (436)
++.+...+.
T Consensus 66 i~~~~~~~~ 74 (80)
T PF00070_consen 66 IEKDGDGVE 74 (80)
T ss_dssp EEEETTSEE
T ss_pred EEEeCCEEE
Confidence 877655433
No 160
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.47 E-value=9.8e-08 Score=94.38 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=29.4
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
||||||||+||++||+.+++.|.+|+|||+.+.++.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG 36 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG 36 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC
Confidence 799999999999999999999999999999887643
No 161
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.47 E-value=1.7e-07 Score=90.25 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+||+||||||||+++|+.|++.|++|+|||+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 58999999999999999999999999999987654
No 162
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.46 E-value=7.7e-07 Score=89.04 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+||||||||.|||+||+.+++.|.+|+||||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999864
No 163
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.46 E-value=8.5e-07 Score=89.10 Aligned_cols=103 Identities=15% Similarity=0.233 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+|||+.+.+. +. . .. .+........+..++.++.+ +|
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-----~~-----~-~~----~~~~~l~~~l~~~gI~i~~~~~v 244 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-----PT-----E-DA----ELSKEVARLLKKLGVRVVTGAKV 244 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-----Cc-----C-CH----HHHHHHHHHHHhcCCEEEeCcEE
Confidence 3689999999999999999999999999999876521 10 0 00 11111112234468888776 78
Q ss_pred EeEeC--CCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDT--DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~--~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++. +++...+ ...+|+ +.++.+|.||+|+|.+|+...
T Consensus 245 ~~i~~~~~~~~~~~-~~~~g~------~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 245 LGLTLKKDGGVLIV-AEHNGE------EKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEEEEecCCCEEEE-EEeCCc------eEEEEeCEEEEeeCCccCCCC
Confidence 88874 3333222 222442 126899999999999987643
No 164
>PRK06753 hypothetical protein; Provisional
Probab=98.45 E-value=8.1e-07 Score=86.53 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
++|+|||||+||+++|+.|++.|++|+|+|+.+..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 37999999999999999999999999999988653
No 165
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.45 E-value=8.2e-07 Score=89.06 Aligned_cols=102 Identities=12% Similarity=0.215 Sum_probs=70.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+.+.- .. + ..+........+..++.++.+ +|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--~~--------~-----~~~~~~~~~~l~~~gi~i~~~~~v 234 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP--GE--------D-----AEVSKVVAKALKKKGVKILTNTKV 234 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC--CC--------C-----HHHHHHHHHHHHHcCCEEEeCCEE
Confidence 36899999999999999999999999999999865310 00 0 011111112233457888776 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+.. .++. +.++.+|.||+|+|..|+..
T Consensus 235 ~~i~~~~~~v~v~~-~~g~------~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 235 TAVEKNDDQVVYEN-KGGE------TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEeCCEEEEEE-eCCc------EEEEEeCEEEEecCCcccCC
Confidence 88877666665543 2331 12789999999999998765
No 166
>PRK06126 hypothetical protein; Provisional
Probab=98.45 E-value=1e-06 Score=90.27 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+||||||+||++|+.|++.|++|+|||+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457999999999999999999999999999998754
No 167
>PRK05868 hypothetical protein; Validated
Probab=98.44 E-value=1.3e-06 Score=84.81 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=32.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
++|+|||||++|+++|+.|++.|++|+|||+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 68999999999999999999999999999987643
No 168
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.44 E-value=6e-07 Score=87.71 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=31.1
Q ss_pred cEEEECCchHHHHHHHhcccCC-CeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~ 96 (436)
||+||||||||+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 6999999999999999999999 99999998754
No 169
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.43 E-value=1.3e-06 Score=85.61 Aligned_cols=94 Identities=18% Similarity=0.295 Sum_probs=69.3
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----cccHHHH---------HHHHHHHHhc
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFDDRLR---------HYATTQLSKS 297 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~----~~~~~~~---------~~~~~~l~~~ 297 (436)
++|+|||||+.|+.+|..|.+.+ ...+|+|+++.+..+ .+...+. -.-.+.+.+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~------------~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQG------------FTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQEN 71 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhC------------CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHC
Confidence 38999999999999999998754 346899998854221 1221110 0012346678
Q ss_pred CCEEEecc-eEEEeC--CeEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+|+++.++ |..++. ..|.+.+|+++.+|.+|+|||.+|.
T Consensus 72 ~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 99999985 888865 4678889999999999999999986
No 170
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.43 E-value=1e-06 Score=86.15 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=31.3
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
||+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 699999999999999999999999999999864
No 171
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.43 E-value=1.2e-06 Score=87.97 Aligned_cols=104 Identities=13% Similarity=0.221 Sum_probs=71.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|++|++.+.+. +. .+ ..+........+..++.++.+ +|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~~-----~~-----~~~~~~l~~~l~~~gV~i~~~~~V 236 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-----PG-----ED-----KEISKLAERALKKRGIKIKTGAKA 236 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-----Cc-----CC-----HHHHHHHHHHHHHcCCEEEeCCEE
Confidence 3689999999999999999999999999999976531 10 00 111111122234567888876 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+.+.+.+....+++ +.++.+|.||+|+|..|+...
T Consensus 237 ~~i~~~~~~v~v~~~~gg~------~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 237 KKVEQTDDGVTVTLEDGGK------EETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEEEEeCCEEEEEEEeCCe------eEEEEeCEEEEeeCCccCCCC
Confidence 8888765555543222221 127899999999999987653
No 172
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.43 E-value=1.3e-07 Score=81.47 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
.+||+|||||||||+||++|++.|++|+|||++..++.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG 54 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 47999999999999999999999999999999876543
No 173
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.42 E-value=2.3e-07 Score=66.04 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=29.1
Q ss_pred EECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 67 IIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
|||||++||+||..|++.|++|+|+|+++...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999998753
No 174
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.42 E-value=8e-07 Score=87.10 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=29.7
Q ss_pred EEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 66 VVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 66 vIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+|||||+|||+||+.|++.|++|+|+|+.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 69999999999999999999999999988654
No 175
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.41 E-value=1.2e-06 Score=85.05 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhc-CCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCchhc
Q 013810 284 DRLRHYATTQLSKS-GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339 (436)
Q Consensus 284 ~~~~~~~~~~l~~~-gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 339 (436)
..+...+.+.+.+. |++++.++ |.+++.+.|.+.+|+ +.+|.||+|+|.....++
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~-i~a~~VV~A~G~~s~~l~ 201 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGD-VHADQVFVCPGADFETLF 201 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCc-EEeCEEEECCCCChhhhC
Confidence 35556666666665 99999884 888887778777775 789999999998765443
No 176
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.41 E-value=1.4e-06 Score=87.57 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=31.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+||+|||||+||+.||..+++.|.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 589999999999999999999999999999864
No 177
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.40 E-value=5.1e-07 Score=76.18 Aligned_cols=31 Identities=13% Similarity=0.370 Sum_probs=26.9
Q ss_pred EEECCchHHHHHHHhcccC-----CCeEEEEcCCCc
Q 013810 66 VVLGSGWAGCRLMKGIDTS-----LYDVVCVSPRNH 96 (436)
Q Consensus 66 vIIGgG~AGl~aA~~L~~~-----g~~v~lie~~~~ 96 (436)
+|||||++|++++.+|.+. ..+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999765 567999999654
No 178
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.40 E-value=1.7e-06 Score=84.92 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=69.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+-|+..|..+++.|.+|||||+.+++. + +. . .++.+......+..++.++.+ ++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-----p----~~--D----~ei~~~~~~~l~~~gv~i~~~~~v 237 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-----P----GE--D----PEISKELTKQLEKGGVKILLNTKV 237 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----C----cC--C----HHHHHHHHHHHHhCCeEEEccceE
Confidence 4789999999999999999999999999999987631 1 10 1 122222222233366777765 77
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++..++.+.+.. .++.. ..+.+|++++|+|-+|+...
T Consensus 238 ~~~~~~~~~v~v~~-~~g~~------~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 238 TAVEKKDDGVLVTL-EDGEG------GTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred EEEEecCCeEEEEE-ecCCC------CEEEeeEEEEccCCccCCCC
Confidence 77766554343332 23321 05789999999999988764
No 179
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.39 E-value=6.6e-06 Score=82.26 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccC----CCeEEEEcCCCcceec
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHMVFT 100 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~----g~~v~lie~~~~~~~~ 100 (436)
.+++|+|||||.|||+||.+|.+. |.+|+|+|+.+..+..
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 357999999999999999999884 6899999999876543
No 180
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.39 E-value=5.6e-06 Score=82.80 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHh----cC--CEEEecc-eEEEeCC-----eEEEcCCcEEecceEEEecCCCCchhcccCCCCC
Q 013810 284 DRLRHYATTQLSK----SG--VRLVRGI-VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (436)
Q Consensus 284 ~~~~~~~~~~l~~----~g--V~i~~~~-v~~i~~~-----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~ 346 (436)
..+.+.+.+.+++ .| ++++.++ |.+++.. .|.+.+| ++.+|.||+|+|.....+++.+|+..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~ 284 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGL 284 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCC
Confidence 3566777777777 67 8888885 8887642 2555556 69999999999988777777776543
No 181
>PRK07588 hypothetical protein; Provisional
Probab=98.39 E-value=1.1e-06 Score=86.07 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
++|+|||||+||+++|+.|++.|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 37999999999999999999999999999987643
No 182
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.39 E-value=1.8e-06 Score=84.23 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=69.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. . .+ ...........+..++.++.+ ++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~-----~----~~-----~~~~~~l~~~l~~~gV~i~~~~~v 206 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS-----L----MP-----PEVSSRLQHRLTEMGVHLLLKSQL 206 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-----h----CC-----HHHHHHHHHHHHhCCCEEEECCeE
Confidence 468999999999999999999999999999987653210 0 00 011111111233457888764 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.+...+.+. ..++. ++.+|.||+|+|..|+.
T Consensus 207 ~~i~~~~~~~~v~-~~~g~--------~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 207 QGLEKTDSGIRAT-LDSGR--------SIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EEEEccCCEEEEE-EcCCc--------EEECCEEEECcCCCcch
Confidence 8888765554443 23565 89999999999998764
No 183
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.37 E-value=1.4e-06 Score=89.29 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+++|+||||||+||++|..|++.|++|+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 457999999999999999999999999999998864
No 184
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.36 E-value=1.8e-06 Score=86.54 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=68.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++|+|||||+.|+.+|..|++.|.+|+||++.+.+.. . .+ ..+........+..++.++.+ +|.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~-----~d-----~~~~~~l~~~l~~~gV~i~~~~~V~ 231 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-----R-----EE-----PEISAAVEEALAEEGIEVVTSAQVK 231 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-----c-----cC-----HHHHHHHHHHHHHcCCEEEcCcEEE
Confidence 6899999999999999999999999999998865321 0 00 011111122234567888776 688
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.++.+++.+.+....++. ..++.+|.+|+|+|.+|+...
T Consensus 232 ~i~~~~~~~~v~~~~~~~------~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 232 AVSVRGGGKIITVEKPGG------QGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEEEcCCEEEEEEEeCCC------ceEEEeCEEEEeECCCcCCCC
Confidence 887654433332211111 127999999999999987653
No 185
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.36 E-value=1.5e-06 Score=85.21 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47899999999999999999999999999998864
No 186
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.36 E-value=1.1e-06 Score=89.88 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 458999999999999999999999999999998864
No 187
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.34 E-value=1.7e-06 Score=84.16 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
.||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 68999999999999999999999999999975
No 188
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.34 E-value=1.9e-06 Score=85.47 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=68.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|++|++.+.+... . .+ ..+........+..++.++.+ .|
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~-~--------~~-----~~~~~~~~~~l~~~gV~v~~~~~v 202 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK-L--------FD-----EEMNQIVEEELKKHEINLRLNEEV 202 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc-c--------cC-----HHHHHHHHHHHHHcCCEEEeCCEE
Confidence 368999999999999999999999999999987653110 0 00 011111122234567888764 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+...+.+ .+|+ ++.+|.||+|+|.+|...
T Consensus 203 ~~i~~~~~~v~~---~~g~--------~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 203 DSIEGEERVKVF---TSGG--------VYQADMVILATGIKPNSE 236 (427)
T ss_pred EEEecCCCEEEE---cCCC--------EEEeCEEEECCCccCCHH
Confidence 888876543222 2555 799999999999987653
No 189
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.33 E-value=2.6e-06 Score=82.65 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=70.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---Cccc---------HHHHHHHHHHHHhcCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSGV 299 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---~~~~---------~~~~~~~~~~l~~~gV 299 (436)
+|+|||||+.|+.+|..+.+.. .++.+|+|+++.+.. +.++ .++.....+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 4899999999999988775321 245899999986422 1111 2233334566777899
Q ss_pred EEEecceEEEeC--CeEEEcCCcEEecceEEEecCCCCc
Q 013810 300 RLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 300 ~i~~~~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++.+++.+++. +.|.+.+|+++.+|.+|+|+|..|.
T Consensus 70 ~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 70 RFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred EEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC
Confidence 999988888874 5688899989999999999999987
No 190
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=9.3e-07 Score=85.76 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=72.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc-ee---cchhhhhhcCcc--------------------cc----
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VF---TPLLASTCVGTL--------------------EF---- 113 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~-~~---~~~~~~~~~~~~--------------------~~---- 113 (436)
.+||+|||||.||+.||...+|.|.++.|+--+-.. .+ .|.+++...|.. .+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 489999999999999999999999999888755322 22 233333322211 00
Q ss_pred -------ccc------ccchhhcchhhhcCCCcEEEEeEeEeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 114 -------RSV------AEPIARIQPAISREPGSYFFLSHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 114 -------~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
... ...-......+....++.++++.|+.+..++. .+.-..+.+|. .+.+++|||+||
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~--------~~~a~aVVlTTG 155 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGP--------EFHAKAVVLTTG 155 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCC--------eeecCEEEEeec
Confidence 000 00111122234456788889999998877555 35444445776 899999999999
Q ss_pred CC
Q 013810 180 AE 181 (436)
Q Consensus 180 ~~ 181 (436)
.-
T Consensus 156 TF 157 (621)
T COG0445 156 TF 157 (621)
T ss_pred cc
Confidence 74
No 191
>PRK06370 mercuric reductase; Validated
Probab=98.33 E-value=2.7e-06 Score=85.29 Aligned_cols=101 Identities=15% Similarity=0.246 Sum_probs=69.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.- . .+ . .+.+......+..++.++.+ +|
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~---------~-~~-~----~~~~~l~~~l~~~GV~i~~~~~V 235 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP---------R-ED-E----DVAAAVREILEREGIDVRLNAEC 235 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc---------c-cC-H----HHHHHHHHHHHhCCCEEEeCCEE
Confidence 37899999999999999999999999999999865321 0 00 0 11111122234568888775 88
Q ss_pred EeEeCCCCEEEE--EEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~--~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+++.+.+ ....++. ++.+|.||+|+|.+|+..
T Consensus 236 ~~i~~~~~~~~v~~~~~~~~~--------~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 236 IRVERDGDGIAVGLDCNGGAP--------EITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEEEcCCEEEEEEEeCCCce--------EEEeCEEEECcCCCcCCC
Confidence 888765544332 2111222 789999999999998764
No 192
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.33 E-value=2.1e-06 Score=84.49 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+|+|||||+|||++|+.|++.|++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998764
No 193
>PLN02985 squalene monooxygenase
Probab=98.33 E-value=3.2e-06 Score=85.34 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=33.1
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 456899999999999999999999999999999864
No 194
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.30 E-value=3.2e-06 Score=84.79 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=69.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. . ..+ ..+........+..++.++.+ +|
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~-----~~d-----~~~~~~l~~~l~~~gI~v~~~~~v 239 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-----S-----FLD-----DEISDALSYHLRDSGVTIRHNEEV 239 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-----C-----cCC-----HHHHHHHHHHHHHcCCEEEECCEE
Confidence 4789999999999999999999999999999876521 0 000 011111111233457888765 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++..++.+.+. ..++. ++.+|.||+|+|.+|+..
T Consensus 240 ~~i~~~~~~~~v~-~~~g~--------~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 240 EKVEGGDDGVIVH-LKSGK--------KIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEEEEeCCeEEEE-ECCCC--------EEEeCEEEEeecCCcccc
Confidence 8887555555443 23454 799999999999998764
No 195
>PRK07846 mycothione reductase; Reviewed
Probab=98.28 E-value=4.9e-06 Score=82.96 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. .. .+ . ++.+....+. ..++.++.+ ++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-----~~-----~d-~----~~~~~l~~l~-~~~v~i~~~~~v 229 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-----RH-----LD-D----DISERFTELA-SKRWDVRLGRNV 229 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-----cc-----cC-H----HHHHHHHHHH-hcCeEEEeCCEE
Confidence 3689999999999999999999999999999986532 00 00 0 1111111112 235776654 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
+.++.+.+.+.+.. .++. ++.+|.|++|+|..|+...
T Consensus 230 ~~i~~~~~~v~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 230 VGVSQDGSGVTLRL-DDGS--------TVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEEEEcCCEEEEEE-CCCc--------EeecCEEEEEECCccCccc
Confidence 88876655544432 3454 7999999999999987654
No 196
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.28 E-value=3.8e-06 Score=83.76 Aligned_cols=100 Identities=12% Similarity=0.157 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..+++.|.+|+|+++.+.+.. + .+ ..+...........++.++.+ +|
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~---------~-~d-----~~~~~~l~~~l~~~gV~i~~~~~v 230 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR---------G-FD-----DDMRALLARNMEGRGIRIHPQTSL 230 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc---------c-cC-----HHHHHHHHHHHHHCCCEEEeCCEE
Confidence 36899999999999999999999999999998765211 0 00 111111112234468888775 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.....+.+.. .++. ++.+|.||+|+|..|+..
T Consensus 231 ~~i~~~~~~~~v~~-~~g~--------~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 231 TSITKTDDGLKVTL-SHGE--------EIVADVVLFATGRSPNTK 266 (446)
T ss_pred EEEEEcCCeEEEEE-cCCc--------EeecCEEEEeeCCCcCCC
Confidence 88875444444332 2454 799999999999988764
No 197
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.27 E-value=4.1e-06 Score=84.00 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=69.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+... + . .+ . ++........+..++.++.+ +|
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-----~----~-~d-~----~~~~~l~~~l~~~gV~i~~~~~v 236 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-----P----N-ED-A----EVSKEIAKQYKKLGVKILTGTKV 236 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-----C----c-cC-H----HHHHHHHHHHHHCCCEEEECCEE
Confidence 3689999999999999999999999999999876421 1 0 00 0 11111122234568888875 78
Q ss_pred EeEeCCCCEEEEEEe-cCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~-~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++.+.+.+.+... .+|. ..++.+|.||+|+|.+|+..
T Consensus 237 ~~i~~~~~~~~v~~~~~~g~------~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 237 ESIDDNGSKVTVTVSKKDGK------AQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEEEeCCeEEEEEEecCCC------eEEEEeCEEEECcCcccCCC
Confidence 888765554433211 2342 12689999999999988764
No 198
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.27 E-value=5.1e-06 Score=83.52 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=69.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.. . .+ . .+........+..++.++.+ +|
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------~-~d-~----~~~~~~~~~l~~~gi~i~~~~~v 247 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA---------A-AD-E----QVAKEAAKAFTKQGLDIHLGVKI 247 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC---------c-CC-H----HHHHHHHHHHHHcCcEEEeCcEE
Confidence 36899999999999999999999999999998765211 0 00 1 11111111223467888775 78
Q ss_pred EeEeCCCCEEEEEEec-CCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~-~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+...+.+.... +++ +..+++|.|++|+|..|+...
T Consensus 248 ~~i~~~~~~v~v~~~~~~g~------~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 248 GEIKTGGKGVSVAYTDADGE------AQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEEEEcCCEEEEEEEeCCCc------eeEEEcCEEEEccCCccCCCC
Confidence 8888665555443211 122 127899999999999987653
No 199
>PRK06116 glutathione reductase; Validated
Probab=98.26 E-value=4.4e-06 Score=83.47 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=69.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. . . .+ ..+........+..++.++.+ +|
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----~----~-~~-----~~~~~~l~~~L~~~GV~i~~~~~V 231 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-----R----G-FD-----PDIRETLVEEMEKKGIRLHTNAVP 231 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-----c----c-cC-----HHHHHHHHHHHHHCCcEEECCCEE
Confidence 4689999999999999999999999999999876521 0 0 00 011111112234567888765 78
Q ss_pred EeEeCCCCE-EEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHV-VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~-v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+.+. +.+.. .+|. ++.+|.||+|+|.+|+...
T Consensus 232 ~~i~~~~~g~~~v~~-~~g~--------~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 232 KAVEKNADGSLTLTL-EDGE--------TLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred EEEEEcCCceEEEEE-cCCc--------EEEeCEEEEeeCCCcCCCC
Confidence 888754332 44332 3555 7999999999999887653
No 200
>PRK14694 putative mercuric reductase; Provisional
Probab=98.26 E-value=5.1e-06 Score=83.34 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++...+ +. .+ . .+........+..++.++.+ +|
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l------~~-----~~-~----~~~~~l~~~l~~~GI~v~~~~~v 241 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL------SQ-----ED-P----AVGEAIEAAFRREGIEVLKQTQA 241 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC------CC-----CC-H----HHHHHHHHHHHhCCCEEEeCCEE
Confidence 368999999999999999999999999999874321 10 00 0 11111222234568888875 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+++.+.+.. +++ ++.+|.||+|+|..|+..
T Consensus 242 ~~i~~~~~~~~v~~--~~~--------~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 242 SEVDYNGREFILET--NAG--------TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred EEEEEcCCEEEEEE--CCC--------EEEeCEEEEccCCCCCcC
Confidence 88887666554432 333 799999999999998764
No 201
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.25 E-value=3.8e-06 Score=81.35 Aligned_cols=33 Identities=12% Similarity=0.340 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
||+|||||+||+++|..|++. |++|+|+|+.+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 699999999999999999986 999999999763
No 202
>PRK06996 hypothetical protein; Provisional
Probab=98.25 E-value=3e-06 Score=83.23 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCC----CeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSL----YDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g----~~v~lie~~~ 95 (436)
...++|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 34589999999999999999999986 4799999864
No 203
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.25 E-value=4.8e-06 Score=83.11 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=67.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+|+|||||++|+.+|..|++.|.+|+++++.+.+.-. . . ...+.+......+..++.++.+ +|
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----~----~-----~~~~~~~l~~~l~~~gI~v~~~~~v 214 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD-----S----F-----DKEITDVMEEELRENGVELHLNEFV 214 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch-----h----c-----CHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 368999999999999999999999999999987652110 0 0 0111222222334567887764 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.+.+...+.. ++. ++.+|.+|+|+|..|+.
T Consensus 215 ~~i~~~~~~~~v~~--~~~--------~i~~d~vi~a~G~~p~~ 248 (444)
T PRK09564 215 KSLIGEDKVEGVVT--DKG--------EYEADVVIVATGVKPNT 248 (444)
T ss_pred EEEecCCcEEEEEe--CCC--------EEEcCEEEECcCCCcCH
Confidence 88876544333321 344 78999999999988764
No 204
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.23 E-value=3.8e-06 Score=82.79 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||+|++|+.+|..|++.|++|+++|+.+........ ..+........+..++.++.+ .+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------~~~~~~~~~~l~~~gi~~~~~~~~ 201 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------PEVAEELAELLEKYGVELLLGTKV 201 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------HHHHHHHHHHHHHCCcEEEeCCce
Confidence 379999999999999999999999999999998774332110 122222233344567877554 77
Q ss_pred EeEeCCCCEEEE--EEecCCcccCCCCceeeeccEEEEeCCCCCC
Q 013810 141 AGIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (436)
Q Consensus 141 ~~id~~~~~v~~--~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~ 183 (436)
..++...+.... ....++. .+.+|.+++++|.+|+
T Consensus 202 ~~i~~~~~~~~~~~~~~~~~~--------~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 202 VGVEGKGNTLVVERVVGIDGE--------EIKADLVIIGPGERPN 238 (415)
T ss_pred EEEEcccCcceeeEEEEeCCc--------EEEeeEEEEeeccccc
Confidence 888876654332 1223554 8999999999999985
No 205
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.23 E-value=5.9e-06 Score=82.82 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=68.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..+++.|.+|+|||+.+.+. + + .+ ..+........+..++.++.+ .|
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-----~----~-~d-----~~~~~~l~~~l~~~gV~i~~~~~V 238 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-----P----G-TD-----TETAKTLQKALTKQGMKFKLGSKV 238 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-----C----C-CC-----HHHHHHHHHHHHhcCCEEEECcEE
Confidence 4789999999999999999999999999999876521 1 1 00 011111111233468888765 78
Q ss_pred EeEeCCCCEEEE--EEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~--~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+ ....++. ...+.+|.|++|+|..|+..
T Consensus 239 ~~i~~~~~~v~v~~~~~~~g~------~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 239 TGATAGADGVSLTLEPAAGGA------AETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEEEcCCeEEEEEEEcCCCc------eeEEEeCEEEEccCCccccc
Confidence 888754444433 2111221 12789999999999988754
No 206
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.23 E-value=5.4e-06 Score=81.92 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~ 97 (436)
.+|+|||||+|||++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 37999999999999999999988 599999987654
No 207
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.23 E-value=2e-06 Score=83.45 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=31.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+|+|||||.||+.||..|++.|++|+|||+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 799999999999999999999999999998765
No 208
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.23 E-value=4.8e-06 Score=83.00 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=67.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. . . .+ ..+........+..++.++.+ .+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-----~----~-~d-----~~~~~~~~~~l~~~gI~i~~~~~v 230 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-----R----S-FD-----SMISETITEEYEKEGINVHKLSKP 230 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----c----c-cC-----HHHHHHHHHHHHHcCCEEEcCCEE
Confidence 3689999999999999999999999999999876521 0 0 00 011111112234467888775 77
Q ss_pred EeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.. .+.+.. .++. ..+.+|.+|+|+|..|+..
T Consensus 231 ~~i~~~~~~~~~v~~-~~g~-------~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 231 VKVEKTVEGKLVIHF-EDGK-------SIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred EEEEEeCCceEEEEE-CCCc-------EEEEcCEEEEeeCCCcCcc
Confidence 77765422 233321 2442 1689999999999998764
No 209
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.23 E-value=6.5e-06 Score=81.50 Aligned_cols=92 Identities=26% Similarity=0.386 Sum_probs=67.6
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---Ccc--------c-HHHHHHHHHHHHhcC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSF--------D-DRLRHYATTQLSKSG 298 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---~~~--------~-~~~~~~~~~~l~~~g 298 (436)
++|||||||..|+.+|..|.. .+.+|+||++.+.. +.+ + .+....+.+.+...+
T Consensus 11 ~~vVIvGgG~aGl~~a~~L~~--------------~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 76 (424)
T PTZ00318 11 PNVVVLGTGWAGAYFVRNLDP--------------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLP 76 (424)
T ss_pred CeEEEECCCHHHHHHHHHhCc--------------CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCC
Confidence 589999999999998877642 24789999986422 111 1 122233455666778
Q ss_pred CEEEecceEEEeC--CeEEE----------cCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGIVKDVDS--QKLIL----------NDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~--~~v~~----------~~g~~i~~D~vi~a~G~~p~ 336 (436)
++++.++|.+|+. +.|.+ .+|.++++|.+|+|+|..|.
T Consensus 77 ~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 77 NRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred eEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 9999988988874 45776 46678999999999999986
No 210
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.23 E-value=5.8e-06 Score=81.10 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~ 95 (436)
++||+|||||.+|+++|++|+++ |.+|+|+|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 37999999999999999999998 99999999875
No 211
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.22 E-value=1.4e-05 Score=75.13 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecC--CCCc--------hhcccCCCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTG--VGPS--------TLVKSLDLPK 346 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G--~~p~--------~~~~~~~l~~ 346 (436)
+.+.+...+++.||++++++ |.+++.+ .+.+.+|+++.||.+|+|+| ..|. +++++.|+++
T Consensus 113 Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 113 IVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred HHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 44556667888999999985 8888764 35667888999999999999 5552 3577777665
No 212
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.22 E-value=4.2e-05 Score=70.02 Aligned_cols=157 Identities=14% Similarity=0.183 Sum_probs=97.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------c-------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------S------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-----------~------------------- 281 (436)
.|+|||+|++|+-+|..|++.+ .+|.++++..... .
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G--------------~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAG--------------LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 7999999999999999998755 8899998742110 0
Q ss_pred ---------ccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CC-e---EEEc-----------CCcEEecceEEEecCCC
Q 013810 282 ---------FDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ-K---LILN-----------DGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~-~---v~~~-----------~g~~i~~D~vi~a~G~~ 334 (436)
-..++...+.+...+.|++++.+. +.++. ++ . +... +..++.++.||.|+|..
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 012334445566677899999884 66653 22 2 2221 22469999999999976
Q ss_pred Cc---hhcccCC---CCC--------CCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHh
Q 013810 335 PS---TLVKSLD---LPK--------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQK 400 (436)
Q Consensus 335 p~---~~~~~~~---l~~--------~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 400 (436)
.. .+.+... ... +......|+..-+ -+|++|++|-++... .|.+.+-+....=.-+|+.||+
T Consensus 173 a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~--~~~g~~~~gm~~~~~--~~~~rmg~~fg~m~~sg~~~a~ 248 (257)
T PRK04176 173 AEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGE--VYPGLYVAGMAANAV--HGLPRMGPIFGGMLLSGKKVAE 248 (257)
T ss_pred cHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCe--EcCCEEEeehhhhhh--cCCCccCchhHhHHHhHHHHHH
Confidence 65 1333221 111 1111222333222 489999999888742 2333334444455578999998
Q ss_pred hhhhhc
Q 013810 401 PSFLLA 406 (436)
Q Consensus 401 ~i~~~~ 406 (436)
-|....
T Consensus 249 ~~~~~~ 254 (257)
T PRK04176 249 LILEKL 254 (257)
T ss_pred HHHHHh
Confidence 887643
No 213
>PLN02507 glutathione reductase
Probab=98.22 E-value=6.3e-06 Score=83.14 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+... . . .+ ..+........+..++.++.+ +|
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-----~----~-~d-----~~~~~~l~~~l~~~GI~i~~~~~V 267 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-----R----G-FD-----DEMRAVVARNLEGRGINLHPRTNL 267 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-----c----c-cC-----HHHHHHHHHHHHhCCCEEEeCCEE
Confidence 3689999999999999999999999999999876421 0 0 00 111111122234567888776 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+.+.+.+.. .++. ++++|.|++|+|.+|+...
T Consensus 268 ~~i~~~~~~~~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 268 TQLTKTEGGIKVIT-DHGE--------EFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEEEEeCCeEEEEE-CCCc--------EEEcCEEEEeecCCCCCCC
Confidence 88875444454432 3454 7999999999999987653
No 214
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.21 E-value=7.5e-06 Score=81.57 Aligned_cols=99 Identities=21% Similarity=0.333 Sum_probs=69.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+|+|||||+.|+.+|..|++.|.+|+||++.+.+. + .. + . .+........+..++.++.+ +|
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~----~~-~-~----~~~~~l~~~l~~~gV~v~~~~~v 222 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-----P----RE-D-R----DIADNIATILRDQGVDIILNAHV 222 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-----C----Cc-C-H----HHHHHHHHHHHhCCCEEEeCCEE
Confidence 3689999999999999999999999999999876421 0 00 0 0 11111122234568888865 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+++.+.+.. ++. ++.+|.+++|+|..|+..
T Consensus 223 ~~i~~~~~~v~v~~--~~g--------~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 223 ERISHHENQVQVHS--EHA--------QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEEEcCCEEEEEE--cCC--------eEEeCEEEEeecCCcCCC
Confidence 88876655555432 223 688999999999998764
No 215
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.19 E-value=7.4e-06 Score=82.09 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=69.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
.+++|||||+.|+.+|..|++.|.+|++|++.+.+.- . .+ . ..........+..++.++.+ ++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~---------~-~d-~----~~~~~l~~~L~~~gV~i~~~~~v~ 242 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP---------G-ED-A----DAAEVLEEVFARRGMTVLKRSRAE 242 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC---------C-CC-H----HHHHHHHHHHHHCCcEEEcCCEEE
Confidence 6899999999999999999999999999998765211 0 00 0 11111122234568888765 788
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.++...+.+.+.. .+|+ ++.+|.|++|+|..|+...
T Consensus 243 ~v~~~~~~~~v~~-~~g~--------~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 243 SVERTGDGVVVTL-TDGR--------TVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEEEeCCEEEEEE-CCCc--------EEEecEEEEeecCCcCCCC
Confidence 8865444454432 3455 7999999999999987653
No 216
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.19 E-value=9.8e-06 Score=80.86 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=68.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+.|+.+|..|++.|.+|+||++.+.+.- . .+ .++...+.+ .. ..++.++.+ +|
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~--~--------~d-~~~~~~l~~----~~-~~gI~i~~~~~V 232 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR--H--------LD-EDISDRFTE----IA-KKKWDIRLGRNV 232 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc--c--------cC-HHHHHHHHH----HH-hcCCEEEeCCEE
Confidence 36899999999999999999999999999998765310 0 00 011111111 12 235777654 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+.+.+.+.. .+|+ ++.+|.|++|+|.+|+...
T Consensus 233 ~~i~~~~~~v~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 233 TAVEQDGDGVTLTL-DDGS--------TVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEEEEcCCeEEEEE-cCCC--------EEEcCEEEEeeccCcCCCC
Confidence 88876555554432 3454 7999999999999987643
No 217
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.18 E-value=6.6e-06 Score=81.80 Aligned_cols=95 Identities=11% Similarity=0.191 Sum_probs=66.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
.+|+|||||+.|+.+|..|++.|.+|+||++.+.+. +.. + . .+........+..++.++.+ +|.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--~~~--------d-~----~~~~~l~~~l~~~gI~i~~~~~v~ 213 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--KLM--------D-A----DMNQPILDELDKREIPYRLNEEID 213 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--hhc--------C-H----HHHHHHHHHHHhcCCEEEECCeEE
Confidence 689999999999999999999999999999876521 000 0 0 11111122234568888764 777
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
.++. ..+.+. +++ .+.+|.|++|+|.+|+..
T Consensus 214 ~i~~--~~v~~~---~g~--------~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 214 AING--NEVTFK---SGK--------VEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred EEeC--CEEEEC---CCC--------EEEeCEEEECcCCCcChH
Confidence 7763 344442 454 789999999999988753
No 218
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.16 E-value=1.4e-05 Score=79.16 Aligned_cols=55 Identities=15% Similarity=0.023 Sum_probs=38.8
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.||.+.| |+.|++||+|.|+..- ..|. .........++--|++|+++|...
T Consensus 331 ~GGi~vd~~~~-t~i~gLYAaGE~a~~g-~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~ 386 (433)
T PRK06175 331 MGGIKVDLNSK-TSMKNLYAFGEVSCTG-VHGANRLASNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred cCCEEECCCcc-ccCCCeEecccccccC-CCccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999 8999999999997410 1111 111234567888899999888653
No 219
>PTZ00367 squalene epoxidase; Provisional
Probab=98.16 E-value=1.1e-05 Score=82.19 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999999999999999875
No 220
>PTZ00058 glutathione reductase; Provisional
Probab=98.15 E-value=1e-05 Score=82.31 Aligned_cols=101 Identities=10% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. .+ .++...+ ....+..++.++.+ .|
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--~~--------~d-~~i~~~l----~~~L~~~GV~i~~~~~V 301 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--RK--------FD-ETIINEL----ENDMKKNNINIITHANV 301 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--cc--------CC-HHHHHHH----HHHHHHCCCEEEeCCEE
Confidence 4789999999999999999999999999999876421 00 00 0111111 11233467887765 67
Q ss_pred EeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.. .+.+....++. ++.+|.|++|+|..|+..
T Consensus 302 ~~I~~~~~~~v~v~~~~~~~--------~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 302 EEIEKVKEKNLTIYLSDGRK--------YEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EEEEecCCCcEEEEECCCCE--------EEECCEEEECcCCCCCcc
Confidence 77775432 23332112222 689999999999887754
No 221
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.15 E-value=1e-05 Score=80.51 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=30.1
Q ss_pred CcEEEECCchHHHHHHHhccc----CCCeEEEEcCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~ 94 (436)
+||+||||||+|+++|..|++ .|++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 589999999999999999998 89999999984
No 222
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.15 E-value=0.00013 Score=73.00 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHH-hcCCEEEecc-eEEEeC---Ce--EE---EcCCc--EEecceEEEecCCCCchhcccCCCC
Q 013810 284 DRLRHYATTQLS-KSGVRLVRGI-VKDVDS---QK--LI---LNDGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (436)
Q Consensus 284 ~~~~~~~~~~l~-~~gV~i~~~~-v~~i~~---~~--v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (436)
..+.+.+.+.+. ..|++++.++ |.+++. +. +. +.+++ ++.+|.||+|.|.....+++.+|+.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 355566666665 4589999985 877752 22 33 23342 6899999999999988888877765
No 223
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.14 E-value=1.9e-06 Score=85.80 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=36.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
..+++|+|||||.|||+||++|.+.|++|+|+|..+..+.+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 45689999999999999999999999999999998876543
No 224
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.13 E-value=0.00012 Score=66.90 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=98.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------c-------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------S------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-----------~------------------- 281 (436)
.|+|||+|++|+-+|..+++.+ .+|.++++...+. .
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G--------------~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNG--------------LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 7999999999999999998765 7888888853210 0
Q ss_pred ---------ccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CC-----eEEEc-----------CCcEEecceEEEecCC
Q 013810 282 ---------FDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ-----KLILN-----------DGTEVPYGLLVWSTGV 333 (436)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~-----~v~~~-----------~g~~i~~D~vi~a~G~ 333 (436)
...++.+.+.+...+.|++++.+. +.++. ++ +|.+. |..++.++.||.|+|.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 012334455556677899998884 66653 22 34432 2247899999999997
Q ss_pred CCc--h-hcccCCCCCCCC---Cc--E--------EeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHH
Q 013810 334 GPS--T-LVKSLDLPKSPG---GR--I--------GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHL 397 (436)
Q Consensus 334 ~p~--~-~~~~~~l~~~~~---G~--i--------~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~ 397 (436)
... . +.+.+++..... |. . .|+.. + .-+|++|++|-.+.. ..|.+.+-+....=.-+|+.
T Consensus 169 ~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t-~-~~~~g~~~~gm~~~~--~~~~~rmgp~fg~m~~sg~~ 244 (254)
T TIGR00292 169 DAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENT-R-EVVPNLYVAGMAVAA--VHGLPRMGPIFGGMLLSGKH 244 (254)
T ss_pred CchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhcc-C-cccCCEEEechhhhh--hcCCCCcCchHHHHHHhhHH
Confidence 764 2 344444332211 10 1 12222 2 248999999988763 23444344444555578999
Q ss_pred HHhhhhhh
Q 013810 398 FQKPSFLL 405 (436)
Q Consensus 398 aa~~i~~~ 405 (436)
||+-|...
T Consensus 245 ~a~~~~~~ 252 (254)
T TIGR00292 245 VAEQILEK 252 (254)
T ss_pred HHHHHHHH
Confidence 99888754
No 225
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.11 E-value=4.1e-06 Score=83.25 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=26.5
Q ss_pred cEEEECCchHHHHHHHhcccCC---CeEEEEcCCC
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSL---YDVVCVSPRN 95 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g---~~v~lie~~~ 95 (436)
||||||||+||..+|..|++.+ ++|+|||+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 6999999999999999999977 8999999653
No 226
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.11 E-value=1.2e-05 Score=85.60 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=68.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- .. .+ ...........+..++.++.+ .+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-----~~----ld-----~~~~~~l~~~l~~~GV~v~~~~~v 205 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-----KQ----LD-----QTAGRLLQRELEQKGLTFLLEKDT 205 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-----hh----cC-----HHHHHHHHHHHHHcCCEEEeCCce
Confidence 36899999999999999999999999999998765211 00 00 011111122234568888776 56
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.+..+.....+. ..+|+ ++.+|.+|+|+|.+|+..
T Consensus 206 ~~i~~~~~~~~v~-~~dG~--------~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 206 VEIVGATKADRIR-FKDGS--------SLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EEEEcCCceEEEE-ECCCC--------EEEcCEEEECCCCCcCcH
Confidence 7776544332222 23665 899999999999988764
No 227
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.10 E-value=1.6e-05 Score=76.47 Aligned_cols=95 Identities=27% Similarity=0.465 Sum_probs=72.9
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--CCc---------c-cHHHHHHHHHHHHhcC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSS---------F-DDRLRHYATTQLSKSG 298 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~--l~~---------~-~~~~~~~~~~~l~~~g 298 (436)
++|||||||+.|+..|..|.... ++.+|+||++... +.. + ..++..-+.+.+++.+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~------------~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~ 71 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKL------------PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG 71 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcC------------CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC
Confidence 38999999999999999997521 1478999999632 111 1 2333444566777555
Q ss_pred -CEEEecceEEEeC--CeEEEcCCcEEecceEEEecCCCCch
Q 013810 299 -VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPST 337 (436)
Q Consensus 299 -V~i~~~~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~~ 337 (436)
|+++.++|++|+. ..|++.++.++++|.+|+++|..++.
T Consensus 72 ~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 72 NVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred ceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc
Confidence 9999999999874 67999998889999999999999984
No 228
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.10 E-value=1.1e-05 Score=85.93 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=67.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+.|+.+|..|++.|.+|+||++.+.+.- .. .+ ...........+..++.++.+ .+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-----~~----ld-----~~~~~~l~~~L~~~GV~v~~~~~v 210 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-----EQ----LD-----QMGGEQLRRKIESMGVRVHTSKNT 210 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-----hh----cC-----HHHHHHHHHHHHHCCCEEEcCCeE
Confidence 36899999999999999999999999999998765211 00 00 011111122234568888876 67
Q ss_pred EeEeCCC--CEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~--~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..+..+. ....+ ...+|+ .+.+|.||+|+|.+|+.
T Consensus 211 ~~I~~~~~~~~~~v-~~~dG~--------~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 211 LEIVQEGVEARKTM-RFADGS--------ELEVDFIVFSTGIRPQD 247 (847)
T ss_pred EEEEecCCCceEEE-EECCCC--------EEEcCEEEECCCcccCc
Confidence 7776432 22222 223666 89999999999999875
No 229
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=1.4e-05 Score=80.25 Aligned_cols=101 Identities=12% Similarity=0.201 Sum_probs=64.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++|+|||||+.|+.+|..|++.|.+|+||++.+.+. + . .+ .++...+.+ ..+.. +.++.+ .|+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-----~----~-~d-~~~~~~~~~----~l~~~-v~i~~~~~v~ 238 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-----P----A-AD-KDIVKVFTK----RIKKQ-FNIMLETKVT 238 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-----C----c-CC-HHHHHHHHH----HHhhc-eEEEcCCEEE
Confidence 689999999999999999999999999999886521 1 0 00 011111111 12223 555554 677
Q ss_pred eEeCCCCEEEEEEec-CCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 142 ~id~~~~~v~~~~~~-~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
.++...+.+.+.... +++ +.++++|.||+|+|.+|+..
T Consensus 239 ~i~~~~~~~~v~~~~~~~~------~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 239 AVEAKEDGIYVTMEGKKAP------AEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred EEEEcCCEEEEEEEeCCCc------ceEEEeCEEEEeecccccCC
Confidence 776544444432211 121 12689999999999998765
No 230
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.09 E-value=1.5e-05 Score=79.99 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCcEEEECCchHHHHHHHhcc---cCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGID---TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~---~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
.++|+|||||+.|+.+|..+. +.|.+|+||++.+.+. + . .+ . .+.+......+..++.++.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-----~----~-~d-~----~~~~~l~~~L~~~GI~i~~~ 251 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-----R----G-FD-S----TLRKELTKQLRANGINIMTN 251 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-----c----c-cC-H----HHHHHHHHHHHHcCCEEEcC
Confidence 368999999999999997664 4589999999876521 0 0 00 1 11111111234467887775
Q ss_pred -EeEeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 139 -HCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 139 -~v~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
.+..++.... ...+.. .++. ++++|.+++|+|.+|+..
T Consensus 252 ~~v~~i~~~~~~~~~v~~-~~g~--------~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 252 ENPAKVTLNADGSKHVTF-ESGK--------TLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred CEEEEEEEcCCceEEEEE-cCCC--------EEEcCEEEEeeCCCcCcc
Confidence 6777765422 222221 2454 799999999999988764
No 231
>PRK14727 putative mercuric reductase; Provisional
Probab=98.08 E-value=1.7e-05 Score=79.72 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=66.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++...+ .. .+ . .+........+..++.++.+ +|
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l------~~-----~d-~----~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL------FR-----ED-P----LLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC------Cc-----ch-H----HHHHHHHHHHHhCCCEEEcCcEE
Confidence 368999999999999999999999999999874221 00 00 0 11111112234567888765 77
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+.. ++. ++.+|.+|+|+|..|+..
T Consensus 252 ~~i~~~~~~~~v~~--~~g--------~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 252 SLVEHDDNGFVLTT--GHG--------ELRAEKLLISTGRHANTH 286 (479)
T ss_pred EEEEEeCCEEEEEE--cCC--------eEEeCEEEEccCCCCCcc
Confidence 77776555554432 233 688999999999998765
No 232
>PRK13748 putative mercuric reductase; Provisional
Probab=98.08 E-value=1.5e-05 Score=81.92 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=67.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++...+ .. .+ . .+........+..++.++.+ .|
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l------~~-----~d-~----~~~~~l~~~l~~~gI~i~~~~~v 333 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF------FR-----ED-P----AIGEAVTAAFRAEGIEVLEHTQA 333 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc------cc-----cC-H----HHHHHHHHHHHHCCCEEEcCCEE
Confidence 368999999999999999999999999999975321 10 00 0 11111122234567888765 77
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.++..+.+.. +++ ++.+|.+|+|+|..|+..
T Consensus 334 ~~i~~~~~~~~v~~--~~~--------~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 334 SQVAHVDGEFVLTT--GHG--------ELRADKLLVATGRAPNTR 368 (561)
T ss_pred EEEEecCCEEEEEe--cCC--------eEEeCEEEEccCCCcCCC
Confidence 78876555554432 233 689999999999998764
No 233
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.08 E-value=0.00013 Score=69.70 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=55.3
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcEEecceEEEecCCCCchh----cccCCCCC
Q 013810 277 EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTL----VKSLDLPK 346 (436)
Q Consensus 277 ~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~----~~~~~l~~ 346 (436)
.+....-+.+.+.+.+.+++.|++++.++ |.+++- + .|.+++|.++++|.||+|+|+....| .+..|+.+
T Consensus 166 HiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~ 245 (486)
T COG2509 166 HIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKM 245 (486)
T ss_pred ccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCccc
Confidence 34333446778889999999999999996 877753 2 57788999999999999999998743 45556665
Q ss_pred CC
Q 013810 347 SP 348 (436)
Q Consensus 347 ~~ 348 (436)
..
T Consensus 246 ~~ 247 (486)
T COG2509 246 RA 247 (486)
T ss_pred cc
Confidence 44
No 234
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.07 E-value=3e-06 Score=85.13 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+.+||||||||++||+||..|++.|++|+|+|+++..+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 358999999999999999999999999999998876544
No 235
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.07 E-value=3.3e-05 Score=78.38 Aligned_cols=92 Identities=15% Similarity=0.265 Sum_probs=72.3
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CCC------------CcccHHHHHHHHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL------------SSFDDRLRHYATTQLS 295 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~---~~l------------~~~~~~~~~~~~~~l~ 295 (436)
.+|+|||||+.|+.+|..+++.+ .+|++++.. ... ....+++.+.+.+.++
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 278 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKG--------------LRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIK 278 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999876 889988641 111 0134567778888888
Q ss_pred hcCCEEEec-ceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~-~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.||+++.+ +|.+++.. .+.+++|+++.+|.+|+|+|..|.
T Consensus 279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 999999987 48877542 356678888999999999999875
No 236
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=1.8e-05 Score=79.39 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=66.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . .+ ..+........+.. +.++.+ ++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~-----~d-----~~~~~~~~~~l~~~-I~i~~~~~v 232 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-----L-----ED-----PEVSKQAQKILSKE-FKIKLGAKV 232 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-----c-----hh-----HHHHHHHHHHHhhc-cEEEcCCEE
Confidence 47899999999999999999999999999998865311 0 00 01111111122334 676654 77
Q ss_pred EeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++...+ .+.+. ..+++ +.++.+|.+++|+|..|+...
T Consensus 233 ~~i~~~~~~~v~~~-~~~~~------~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 233 TSVEKSGDEKVEEL-EKGGK------TETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EEEEEcCCceEEEE-EcCCc------eEEEEeCEEEEccCCccCCCC
Confidence 77765443 34432 11222 127899999999999987753
No 237
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.05 E-value=3.8e-05 Score=78.01 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=72.7
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CC--------CC----cccHHHHHHHHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LS----SFDDRLRHYATTQLS 295 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~---~~--------l~----~~~~~~~~~~~~~l~ 295 (436)
.+|+|||||+.|+.+|..+++.| .+|+++... .. ++ ....++.+.+.+.++
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 277 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKG--------------IRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVK 277 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999876 888888652 11 01 124577788888999
Q ss_pred hcCCEEEec-ceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~-~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.|++++.+ ++.+++.. .|.+.+|+++.+|.||+|+|..|.
T Consensus 278 ~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 278 EYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred HCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 999999987 48777642 356678888999999999999875
No 238
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.04 E-value=3.5e-05 Score=82.19 Aligned_cols=90 Identities=21% Similarity=0.249 Sum_probs=66.2
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------Cc--ccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (436)
..+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ |. ++.+....-.+.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--------------~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--------------HPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 45679999999999999999999866 899999985321 21 2344445555677888
Q ss_pred CCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
||+++.+.... +.+.+.....+|.||+|+|..+.
T Consensus 603 GVe~~~gt~Vd-----i~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 603 GVKFEFGCSPD-----LTVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred CCEEEeCceeE-----EEhhhheeccCCEEEECcCCCCC
Confidence 99999985222 23334445679999999999864
No 239
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.04 E-value=2.2e-05 Score=75.22 Aligned_cols=105 Identities=17% Similarity=0.302 Sum_probs=77.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+||++|+|+.|+.+|..|...+.+||+|++++... ... ....+.+....+.++.++.++.+ .+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-----~~l---------f~~~i~~~~~~y~e~kgVk~~~~t~~ 278 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-----PRL---------FGPSIGQFYEDYYENKGVKFYLGTVV 278 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-----hhh---------hhHHHHHHHHHHHHhcCeEEEEecce
Confidence 4679999999999999999999999999999986521 111 11223344444567789999887 45
Q ss_pred EeEeCCC-CEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCC
Q 013810 141 AGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (436)
Q Consensus 141 ~~id~~~-~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~ 188 (436)
.+++... +.+.-..+.++. ++.+|-||+.+|++|....+.
T Consensus 279 s~l~~~~~Gev~~V~l~dg~--------~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 279 SSLEGNSDGEVSEVKLKDGK--------TLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred eecccCCCCcEEEEEeccCC--------EeccCeEEEeecccccccccc
Confidence 5665433 344444455787 899999999999999887665
No 240
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.01 E-value=2.6e-05 Score=78.36 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=64.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
.+++|||||+.|+.+|..|++.|.+|+|+++...+ +.+ + . .+........+..++.++.+ .+.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l---~~~--------d-~----~~~~~l~~~L~~~gV~i~~~~~v~ 244 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL---RGF--------D-Q----DCANKVGEHMEEHGVKFKRQFVPI 244 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc---ccc--------C-H----HHHHHHHHHHHHcCCEEEeCceEE
Confidence 57999999999999999999999999999864211 000 0 0 11111112234467888775 556
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
.++...+.+.+.. .+++. ..++.+|.+++|+|..|+..
T Consensus 245 ~v~~~~~~~~v~~-~~~~~-----~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 245 KVEQIEAKVKVTF-TDSTN-----GIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred EEEEcCCeEEEEE-ecCCc-----ceEEEeCEEEEEecCCcCCC
Confidence 6654443333321 12210 01689999999999988764
No 241
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.00 E-value=2.2e-05 Score=84.55 Aligned_cols=92 Identities=25% Similarity=0.282 Sum_probs=70.1
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (436)
..+++|+|||+|+.|+.+|..|++.| .+|+++++.+.+ | .++.++.+...+.+++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G--------------~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~ 369 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEG--------------FPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLL 369 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhh
Confidence 34679999999999999999999866 899999985311 2 24556666667788889
Q ss_pred CCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCC-Cc
Q 013810 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 336 (436)
Q Consensus 298 gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 336 (436)
||+++.+... +..+.+++.....+|.||+|+|.. |.
T Consensus 370 Gv~f~~n~~v---G~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 370 GGRFVKNFVV---GKTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred cCeEEEeEEe---ccEEeHHHhccccCCEEEEeCCCCCCC
Confidence 9999988532 234556666666799999999984 54
No 242
>PRK07208 hypothetical protein; Provisional
Probab=98.00 E-value=5.2e-06 Score=83.70 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=36.1
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+++++|+|||||++||+||..|++.|++|+|+|+.+.++.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3457899999999999999999999999999999987654
No 243
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.00 E-value=3.3e-05 Score=78.03 Aligned_cols=99 Identities=14% Similarity=0.226 Sum_probs=65.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
.+|+|||||+.|+.+|..|++.|.+|+||++...+ +.+ + . .+.+......+..++.++.+ .+.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l---~~~--------d-~----~~~~~l~~~l~~~GV~i~~~~~v~ 246 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL---RGF--------D-R----QCSEKVVEYMKEQGTLFLEGVVPI 246 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc---ccC--------C-H----HHHHHHHHHHHHcCCEEEcCCeEE
Confidence 58999999999999999999999999999864210 000 0 0 11111112233467888776 556
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.++.....+.+. ..+++ ++.+|.|++|+|..|+...
T Consensus 247 ~v~~~~~~~~v~-~~~g~--------~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 247 NIEKMDDKIKVL-FSDGT--------TELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EEEEcCCeEEEE-ECCCC--------EEEcCEEEEeeCCCCCccc
Confidence 665443333332 23555 7899999999999987653
No 244
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.97 E-value=6.1e-06 Score=80.80 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37899999999999999999999999999998864
No 245
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.97 E-value=2.9e-05 Score=77.71 Aligned_cols=89 Identities=21% Similarity=0.315 Sum_probs=66.0
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (436)
..+++|+|||+|+.|+++|..|++.+ .+|+++++.+.+ + ..+.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g--------------~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKG--------------YDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 34468999999999999999998765 899999985422 1 13556677777888889
Q ss_pred CCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCC
Q 013810 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 298 gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
||+++.++.. ...+.+.+.. +.+|.||+|+|..
T Consensus 204 gv~~~~~~~v---~~~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 204 GVEIRTNTEV---GRDITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred CCEEEeCCEE---CCccCHHHHH-hhCCEEEEccCCC
Confidence 9999988632 1123333333 7799999999986
No 246
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.95 E-value=6.4e-06 Score=82.35 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=33.5
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCccee
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVF 99 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~ 99 (436)
++|+|||||+|||+||+.|++.| ++|+|+|++++.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 47999999999999999999977 89999999987654
No 247
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=7.6e-06 Score=79.62 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=34.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+||+|+|||.|||+||.+|+++|++|||+|..++.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 5899999999999999999999999999999987544
No 248
>PLN02546 glutathione reductase
Probab=97.92 E-value=4.5e-05 Score=77.65 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=65.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+... . . +...+........+..++.++.+ .+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-----~----~------~d~~~~~~l~~~L~~~GV~i~~~~~v 316 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-----R----G------FDEEVRDFVAEQMSLRGIEFHTEESP 316 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-----c----c------cCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 4689999999999999999999999999999876521 0 0 01111111122234568888765 67
Q ss_pred EeEeCC-CCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTD-NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~-~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.. +..+.+.. .++. ...+|.+|+|+|..|+..
T Consensus 317 ~~i~~~~~g~v~v~~-~~g~--------~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 317 QAIIKSADGSLSLKT-NKGT--------VEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEEEcCCCEEEEEE-CCeE--------EEecCEEEEeeccccCCC
Confidence 777542 33344432 2232 345899999999998764
No 249
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.91 E-value=5.8e-05 Score=78.02 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchh-hhcCCCcEEEEe-E
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPA-ISREPGSYFFLS-H 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~ 139 (436)
..+|+|||||+.|+..|..|++.|.+|+|||+.+.+. + . .+ ..+...... +.+..++.++.+ .
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-----~----~-~d-----~eis~~l~~~ll~~~GV~I~~~~~ 376 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-----P----L-LD-----ADVAKYFERVFLKSKPVRVHLNTL 376 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-----c----c-CC-----HHHHHHHHHHHhhcCCcEEEcCCE
Confidence 3689999999999999999999999999999976621 1 0 00 011111111 123467888766 7
Q ss_pred eEeEeCCCC--EEEEEEec--CCcccC----CCCceeeeccEEEEeCCCCCCCCC
Q 013810 140 CAGIDTDNH--VVHCETVT--DELRTL----EPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 140 v~~id~~~~--~v~~~~~~--~g~~~~----~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
|..++.... .+.+.... +++... .....++.+|.|++|+|.+|+...
T Consensus 377 V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 377 IEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 777875432 24432111 010000 000126899999999999987643
No 250
>PRK06847 hypothetical protein; Provisional
Probab=97.88 E-value=0.00013 Score=70.97 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.++.+.+.+.+.+.|++++.++ +.+++. + .+.+.+|+++.+|.||.|.|..+.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 3455667777777899999984 777753 2 366778989999999999998765
No 251
>PLN02268 probable polyamine oxidase
Probab=97.88 E-value=1.1e-05 Score=80.22 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=34.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
++|+|||||.|||+||..|.+.|++|+|+|++++.+.+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 37999999999999999999999999999999887654
No 252
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.88 E-value=1.1e-05 Score=77.85 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+++|+|||||+||++||+.|++.|++|+|||+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 36899999999999999999999999999997654
No 253
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.87 E-value=7.7e-05 Score=72.80 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEe--CCe---EEEcCCcEEecceEEEecCCCCc----------hhcccCCCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPS----------TLVKSLDLPK 346 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~---v~~~~g~~i~~D~vi~a~G~~p~----------~~~~~~~l~~ 346 (436)
+.+.+.+.+++.||+++.++ |.+++ +++ |.++++.++.+|.||+|+|-..- .+++.+|..+
T Consensus 111 Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i 187 (409)
T PF03486_consen 111 VVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTI 187 (409)
T ss_dssp HHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--E
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcE
Confidence 34555667788899999995 88884 344 56667789999999999986542 2466676544
No 254
>PRK10262 thioredoxin reductase; Provisional
Probab=97.86 E-value=9.9e-05 Score=70.27 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=67.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+...+ .+.+......+..++.++.. .+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~-----------------~~~~~~~~~l~~~gV~i~~~~~v 208 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEK-----------------ILIKRLMDKVENGNIILHTNRTL 208 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCH-----------------HHHHHHHhhccCCCeEEEeCCEE
Confidence 4789999999999999999999999999999876421110 00111111133457887764 77
Q ss_pred EeEeCCCC---EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNH---VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~---~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++.+.. .+.+....++. ++.++.+|.||+|+|..|+..
T Consensus 209 ~~v~~~~~~~~~v~~~~~~~~~-----~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 209 EEVTGDQMGVTGVRLRDTQNSD-----NIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EEEEcCCccEEEEEEEEcCCCC-----eEEEEECCEEEEEeCCccChh
Confidence 88876543 23343211111 012789999999999988764
No 255
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=3.1e-05 Score=73.89 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|||||||.||..||...+|.|.+.+|+..+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 4589999999999999999999999999988765
No 256
>PRK07538 hypothetical protein; Provisional
Probab=97.85 E-value=1.3e-05 Score=79.23 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+||+|||||+||+++|..|++.|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999998764
No 257
>PRK07233 hypothetical protein; Provisional
Probab=97.85 E-value=1.2e-05 Score=79.97 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=33.9
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
+|+|||||+|||+||..|++.|++|+|+|+++.++..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 6999999999999999999999999999999876543
No 258
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.83 E-value=4.4e-05 Score=76.08 Aligned_cols=90 Identities=22% Similarity=0.273 Sum_probs=66.0
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.. + .++.++.....+.+++.|
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~g 197 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAG--------------HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCC
Confidence 3468999999999999999998765 899999985311 2 245566666677788899
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCC-CCc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 336 (436)
|+++.+... ...+.+.+. ...+|.||+|+|. .|.
T Consensus 198 v~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 198 VTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred cEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 999998632 222333333 3469999999997 554
No 259
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.83 E-value=5.8e-05 Score=72.85 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=61.3
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----------cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~----------~~~~~~~~~~~~~l~~~ 297 (436)
+.+++|+|||+|+.|+++|..|++.+ .+|+++++.+... .++.+......+.+.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLG--------------YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEA 81 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhC
Confidence 34459999999999999999998765 8999999853221 02223333344556677
Q ss_pred CCEEEecc-eEEEeC------CeEE--E--cCCcEEecceEEEecCCC
Q 013810 298 GVRLVRGI-VKDVDS------QKLI--L--NDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 298 gV~i~~~~-v~~i~~------~~v~--~--~~g~~i~~D~vi~a~G~~ 334 (436)
|++++.++ +..++. +... . .++..+.+|.||+|+|..
T Consensus 82 ~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 82 GVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred CeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 99999885 433221 1111 0 112247899999999984
No 260
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.82 E-value=1.6e-05 Score=77.48 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+|||||++|+++|++|++.|++|+|||+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 47999999999999999999999999999998753
No 261
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.81 E-value=1.6e-05 Score=79.79 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCcEEEECCchHHHHHHHhcccC----CCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~----g~~v~lie~~~~~~~ 99 (436)
++||+|||||+|||+||..|++. |++|+|+|+++..+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 36899999999999999999998 999999999987644
No 262
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00036 Score=60.31 Aligned_cols=156 Identities=13% Similarity=0.211 Sum_probs=92.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-----------Cc--ccHH-------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----------SS--FDDR------------- 285 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-----------~~--~~~~------------- 285 (436)
.|+|||+|++|+-+|.+|++.+ .+|.++++.-.+ +. ...+
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g--------------~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAG--------------LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCC--------------ceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 7999999999999999999765 999999985211 11 0111
Q ss_pred -------------HHHHHHHHHHhcCCEEEecc-eEEE--eCC----eEEEc-----------CCcEEecceEEEecCCC
Q 013810 286 -------------LRHYATTQLSKSGVRLVRGI-VKDV--DSQ----KLILN-----------DGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 286 -------------~~~~~~~~l~~~gV~i~~~~-v~~i--~~~----~v~~~-----------~g~~i~~D~vi~a~G~~ 334 (436)
+...+....-+.|++++... +.++ .++ +|.++ |--.++++.|+-+||..
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 11122222334567777663 5554 122 23322 33468999999999998
Q ss_pred Cc--hh-cccC---CCCCC-CC-------CcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHh
Q 013810 335 PS--TL-VKSL---DLPKS-PG-------GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQK 400 (436)
Q Consensus 335 p~--~~-~~~~---~l~~~-~~-------G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 400 (436)
.. .+ .+.. +.++- ++ -.+.|+... .-+||+|++|-.++.- .|.+.+-+....=.-+|+.||+
T Consensus 178 a~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~--eV~pgL~vaGMa~~av--~G~pRMGPiFGgMllSGkkaAe 253 (262)
T COG1635 178 AEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTG--EVYPGLYVAGMAVNAV--HGLPRMGPIFGGMLLSGKKAAE 253 (262)
T ss_pred hHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccc--cccCCeEeehhhHHhh--cCCcccCchhhhhhhchHHHHH
Confidence 86 33 3222 22221 10 112233322 3689999999887631 2333334444455578888888
Q ss_pred hhhhh
Q 013810 401 PSFLL 405 (436)
Q Consensus 401 ~i~~~ 405 (436)
.|...
T Consensus 254 ~i~e~ 258 (262)
T COG1635 254 EILEK 258 (262)
T ss_pred HHHHH
Confidence 77654
No 263
>PLN02576 protoporphyrinogen oxidase
Probab=97.80 E-value=1.8e-05 Score=80.11 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=34.7
Q ss_pred CCcEEEECCchHHHHHHHhcccC-CCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~~~~~~ 99 (436)
+++|+|||||+|||+||++|.+. |++|+|+|+++..+.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 46899999999999999999999 999999999987654
No 264
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.79 E-value=2.3e-05 Score=73.49 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCCCcEEEECCchHHHHHHHhccc------CCCeEEEEcCCCcceec
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDT------SLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~------~g~~v~lie~~~~~~~~ 100 (436)
...+||+|||||||||+||++|++ ..++|.|+|+....+.+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh 120 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH 120 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc
Confidence 446899999999999999999965 45789999998776554
No 265
>PLN02463 lycopene beta cyclase
Probab=97.79 E-value=0.00017 Score=71.51 Aligned_cols=90 Identities=24% Similarity=0.408 Sum_probs=65.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--C-c---------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--S-S--------------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--~-~--------------------------- 281 (436)
.|+|||||++|+-+|..|++.+ .+|.++++.+.. + .
T Consensus 30 DVvIVGaGpAGLalA~~La~~G--------------l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~ 95 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAG--------------LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVY 95 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEE
Confidence 7999999999999999998754 677777763210 0 0
Q ss_pred ----------------ccHHHHHHHHHHHHhcCCEEEecceEEEeC----CeEEEcCCcEEecceEEEecCCCC
Q 013810 282 ----------------FDDRLRHYATTQLSKSGVRLVRGIVKDVDS----QKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 282 ----------------~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~----~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
....+.+.+.+.+.+.||+++..+|.+++. ..|.+++|+++.+|.||.|+|..+
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 012233445556667799998767777753 247778898999999999998765
No 266
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.79 E-value=0.00016 Score=74.08 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=67.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC------------Cc----ccHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS----FDDRLRHYATTQLS 295 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l------------~~----~~~~~~~~~~~~l~ 295 (436)
.|+|||||+.|+.+|..+++.+ .+|+++++.... +. ...++.+.+.+.++
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g--------------~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~ 71 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAK--------------LDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQ 71 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHH
Confidence 7999999999999999998765 889999875321 11 12456667777788
Q ss_pred hcCCEEEecceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.|++++..++..++.+ .+.+.++ ++.+|.+|+|+|..|.
T Consensus 72 ~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 72 DFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred HcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 88999986667777642 2444444 5889999999999886
No 267
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.79 E-value=3.3e-05 Score=80.14 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~ 96 (436)
.+++|+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 46899999999999999999999 4999999998753
No 268
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.78 E-value=2.2e-05 Score=79.48 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=33.9
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++||+|||||++|+++|+.|+++|++|+|||+.+.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4558999999999999999999999999999999853
No 269
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.78 E-value=0.00011 Score=64.88 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=57.6
Q ss_pred EEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCC-CCC--------------Cc----------------
Q 013810 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL--------------SS---------------- 281 (436)
Q Consensus 234 vViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~-~~l--------------~~---------------- 281 (436)
+|||+|++|+-+|..|.+.+ .+ |+++++. .+. +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--------------~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--------------IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----------------EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCC--------------CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 69999999999999998876 55 8888874 211 00
Q ss_pred -------------ccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCCC
Q 013810 282 -------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 282 -------------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
..+++.+++++..++.++++..++ |++++.+ .|.+.+++++.||.||+|+|..
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 012344667777888899988874 8887542 3777888889999999999973
No 270
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.78 E-value=2.4e-05 Score=79.16 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+||+|||||.+|+++|+.|+++|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 458999999999999999999999999999999754
No 271
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.77 E-value=2.4e-05 Score=75.36 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
+||+|||||+||+++|..|++.|.+|+|+|+++..+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 689999999999999999999999999999976643
No 272
>PRK12831 putative oxidoreductase; Provisional
Probab=97.75 E-value=7.5e-05 Score=74.69 Aligned_cols=92 Identities=20% Similarity=0.361 Sum_probs=65.2
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------Cc--ccH-HHHHHHHHHHHh
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDD-RLRHYATTQLSK 296 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~~--~~~-~~~~~~~~~l~~ 296 (436)
..+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.. +. ++. ++.....+.+++
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMG--------------YDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence 44568999999999999999999876 899999974311 11 222 255556677888
Q ss_pred cCCEEEecceEEEeCCeEEEcCC-cEEecceEEEecCC-CCc
Q 013810 297 SGVRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGV-GPS 336 (436)
Q Consensus 297 ~gV~i~~~~v~~i~~~~v~~~~g-~~i~~D~vi~a~G~-~p~ 336 (436)
.||+++.++.. ...+.+.+. +++.+|.||+|+|. .|.
T Consensus 204 ~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 204 LGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred cCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 99999988622 122333333 34569999999997 454
No 273
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.74 E-value=2.5e-05 Score=77.12 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+||+|||||.+|+++|++|++.|.+|+|+|+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999864
No 274
>PLN02568 polyamine oxidase
Probab=97.74 E-value=3e-05 Score=78.63 Aligned_cols=39 Identities=28% Similarity=0.492 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC-----CeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL-----YDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g-----~~v~lie~~~~~~~ 99 (436)
+.++|+|||||+|||+||..|++.| ++|+|+|+.+..+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 4578999999999999999999877 89999999887544
No 275
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.74 E-value=8e-05 Score=79.16 Aligned_cols=92 Identities=22% Similarity=0.390 Sum_probs=67.5
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC----C----C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L----S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~----l----~--~~~~~~~~~~~~~l~~~ 297 (436)
..+++|+|||+|+.|+.+|..|++.+ .+|+++++.+. + + .++.++.+...+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRG--------------YDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 34578999999999999999999866 89999998421 1 1 23455656666778889
Q ss_pred CCEEEecceEEEeCCeEEEcCCcEEecceEEEecCC-CCc
Q 013810 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (436)
Q Consensus 298 gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 336 (436)
||+++.+... ...+.+++..+..+|.||+|+|. .|.
T Consensus 495 gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 495 GVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred CCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 9999988532 23344444445679999999998 454
No 276
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.73 E-value=2.7e-05 Score=78.17 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...||||||+|+||++||+.|++.|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34799999999999999999999999999999976
No 277
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.73 E-value=2.7e-05 Score=79.96 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++.+|+|||||+|||++|..|++.|++|+|||+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999999999999999865
No 278
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.73 E-value=2.7e-05 Score=78.81 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=34.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+||+|||||++||+||..|++.|++|+|+|+++..+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 5899999999999999999999999999999977643
No 279
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.73 E-value=9.6e-05 Score=68.81 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=71.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||.-||..+.-..+.|.+||+||-.+... +..+. ++......+....++.|..+ +|
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~----------~~mD~-----Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG----------GVMDG-----EISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc----------cccCH-----HHHHHHHHHHHhcCceeEeccEE
Confidence 4789999999999999999999999999999765421 11111 12222222344478888776 88
Q ss_pred EeEeCCCC-EE--EEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNH-VV--HCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~-~v--~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+..++... .+ .+....++. ..++++|.|++|+|-+|+.-
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k------~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGK------KETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred EEeeccCCCceEEEEEecCCCc------eeEEEeeEEEEEccCccccc
Confidence 88887655 33 344333443 23899999999999988764
No 280
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.73 E-value=2.9e-05 Score=75.91 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++++|+|||||.+|+++|++|++.|.+|+|||+...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 458999999999999999999999999999998764
No 281
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.72 E-value=2.6e-05 Score=78.30 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=33.2
Q ss_pred CcEEEECCchHHHHHHHhcccC------CCeEEEEcCCCcceec
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRNHMVFT 100 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~------g~~v~lie~~~~~~~~ 100 (436)
++|+|||||.|||+||..|.+. |++|+|+|++++.+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 5799999999999999999885 4789999999876543
No 282
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.72 E-value=2.5e-05 Score=76.21 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=32.7
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcce
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMV 98 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~ 98 (436)
++|+|||||.|||+||++|++.+ .+++|+|++++.+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 47999999999999999999988 8999999987753
No 283
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.71 E-value=8.6e-05 Score=80.73 Aligned_cols=91 Identities=19% Similarity=0.384 Sum_probs=66.3
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.. + .++.++.+...+.+++.|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G--------------~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~G 494 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG--------------VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIG 494 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCC
Confidence 4578999999999999999999876 899999985321 1 135667777778889999
Q ss_pred CEEEecceEEEeCCeEEEcCCc-EEecceEEEecCCC-Cc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGT-EVPYGLLVWSTGVG-PS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~-~i~~D~vi~a~G~~-p~ 336 (436)
|+++.+.+.. ..+.+.+-. ...+|.||+|+|.. |.
T Consensus 495 v~~~~~~~vg---~~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 495 VKIETNKVIG---KTFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred CEEEeCCccC---CccCHHHHhhccCCCEEEEecCCCCCC
Confidence 9999986321 122222211 24589999999984 44
No 284
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.71 E-value=2.8e-05 Score=75.90 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCchhcccCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l 344 (436)
..+.+.+.+.+++.|++++.++ |.+++. +. |.+.++ ++.+|.||+|+|.....+...+++
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~ 209 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGI 209 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhccc
Confidence 3566677777888999999984 888754 32 444454 799999999999766555554443
No 285
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.70 E-value=0.00014 Score=77.90 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=64.0
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||||+.|+.+|..|++.+ .+|+++++.+.+ + ..+.+......+.+.+.|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G--------------~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~G 601 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAG--------------HPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHG 601 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcC
Confidence 4568999999999999999999766 899999985321 1 123444555556777889
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.+.-.. +.+.+.+...+|.||+|+|..+.
T Consensus 602 Ve~~~g~~~d-----~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 602 VEFKYGCSPD-----LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred cEEEEecccc-----eEhhhhhcccccEEEECCCCCCC
Confidence 9998873111 22333345669999999998764
No 286
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.70 E-value=0.00023 Score=68.27 Aligned_cols=88 Identities=28% Similarity=0.445 Sum_probs=61.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-C-CC-----Ccc----------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-IL-----SSF---------------------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l-----~~~---------------------- 282 (436)
.|+|||||..|+|.|..+++.| .+|.|+... + +. +.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--------------~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--------------AKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----------------EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 3899999999999999999877 788888432 1 11 110
Q ss_pred --------------------------c-HHHHHHHHHHHHh-cCCEEEecceEEEeC-----CeEEEcCCcEEecceEEE
Q 013810 283 --------------------------D-DRLRHYATTQLSK-SGVRLVRGIVKDVDS-----QKLILNDGTEVPYGLLVW 329 (436)
Q Consensus 283 --------------------------~-~~~~~~~~~~l~~-~gV~i~~~~v~~i~~-----~~v~~~~g~~i~~D~vi~ 329 (436)
| ..+.+.+.+.+++ .+++++..+|+++.. .+|.+.+|+++.+|.||+
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEE
Confidence 1 1233445556665 589998878888743 368889999999999999
Q ss_pred ecCC
Q 013810 330 STGV 333 (436)
Q Consensus 330 a~G~ 333 (436)
|+|.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9998
No 287
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.69 E-value=4.2e-05 Score=79.12 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=32.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...||||||+|.|||+||+.+++.|.+|+||||...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 357999999999999999999999999999998753
No 288
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00035 Score=65.38 Aligned_cols=90 Identities=24% Similarity=0.381 Sum_probs=68.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCC------------CC-----cccHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEI------------LS-----SFDDRLRHYATTQ 293 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~------------l~-----~~~~~~~~~~~~~ 293 (436)
.|+|||+|+.|+-.|.++++.+ .+ +.+++.... .| ...+++.+.+.+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 7999999999999999999865 45 444444211 11 2346777888888
Q ss_pred HHhcCCEEEecceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 294 LSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 294 l~~~gV~i~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
....++++....+.+++.. .|.+.+++ +.++.||+|+|..+.
T Consensus 71 a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 71 AEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred HhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 8888999998778877764 35556666 999999999999876
No 289
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.68 E-value=3.6e-05 Score=76.16 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
||||||+|.|||+||+.+++.|.+|+||||.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccc
Confidence 7999999999999999999999999999998763
No 290
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.67 E-value=4.3e-05 Score=77.36 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
...||||||+|.||++||+.+++.|.+|+||||.+..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~ 96 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA 96 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 4689999999999999999999999999999998654
No 291
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.67 E-value=3.3e-05 Score=77.29 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=33.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+|+|||||+|||+||.+|.+.|++|+|+|+.+..+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999987544
No 292
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.66 E-value=3e-05 Score=78.66 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEe--CC---eEEEcCCcEEecceEEEecCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ---KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
..+.+.+.+.+++.|++++.++ |.+|. ++ +|++.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 4667778888889999999995 88775 33 4777888889999999998853
No 293
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.66 E-value=4.5e-05 Score=67.18 Aligned_cols=91 Identities=29% Similarity=0.445 Sum_probs=61.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----CcccH-----------HHH--H--HHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD-----------RLR--H--YATT 292 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l----~~~~~-----------~~~--~--~~~~ 292 (436)
+|+|||||+.|+.+|..|+..+ .+|+++++.+.. ..+.. ... + .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--------------~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--------------AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCC--------------CeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 4899999999999999999654 899999764311 11000 011 1 3334
Q ss_pred HHHhcCCEEEec-ceEEEeC--Ce-------E---EEcCCcEEecceEEEecCCCCc
Q 013810 293 QLSKSGVRLVRG-IVKDVDS--QK-------L---ILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 293 ~l~~~gV~i~~~-~v~~i~~--~~-------v---~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+...+++++.+ ++.+++. .. + ...++.++.+|.+|+|+|..|.
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 456789999766 4776653 21 1 1234568999999999998876
No 294
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.66 E-value=0.00013 Score=72.67 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=61.4
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------Ccc--cHHHHHHHHHHHHhc
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SSF--DDRLRHYATTQLSKS 297 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------~~~--~~~~~~~~~~~l~~~ 297 (436)
..++|+|||+|+.|+.+|..|+... .+.+|+|+++.+.. |.. ...+.+...+.+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHC
Confidence 3458999999999999999997521 24899999996422 111 122334455567778
Q ss_pred CCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+|+++.+. + +..+.+++-. ..+|.||+|+|..+.
T Consensus 93 ~v~~~~nv~v----g~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 93 RVSFFGNVTL----GRDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred CeEEEcCEEE----CccccHHHHh-hhCCEEEEecCCCCC
Confidence 89988763 3 1223343332 469999999999864
No 295
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.66 E-value=0.00014 Score=72.82 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=64.9
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|+..+ .+|+++++.+.+ + .++.++.....+.+++.|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G--------------~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 205 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG--------------VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMG 205 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCC
Confidence 4568999999999999999998765 899999985421 1 235566666677888999
Q ss_pred CEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.++ +.. .+.+.+ ....+|.||+|+|..+.
T Consensus 206 v~~~~~~~v~~----~~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 206 IEFHLNCEVGR----DISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred CEEECCCEeCC----ccCHHH-HHhcCCEEEEEeCCCCC
Confidence 9999885 421 111111 12469999999999774
No 296
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.64 E-value=0.00094 Score=66.60 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=63.1
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC------------------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL------------------------------ 279 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l------------------------------ 279 (436)
++|+|||+|++|+-+|..|.+.+ .+|+++++.. +.
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G--------------~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~ 76 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREG--------------HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYES 76 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcC--------------CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhh
Confidence 58999999999999999998755 6777777631 10
Q ss_pred ---------------Cc-------------c--cHHHHHHHHHHHHhcCCE--EEecc-eEEEeC--Ce--EEEcCC--c
Q 013810 280 ---------------SS-------------F--DDRLRHYATTQLSKSGVR--LVRGI-VKDVDS--QK--LILNDG--T 320 (436)
Q Consensus 280 ---------------~~-------------~--~~~~~~~~~~~l~~~gV~--i~~~~-v~~i~~--~~--v~~~~g--~ 320 (436)
+. + ..++.+++++..+..|+. +..++ |.+++. +. |.+.++ .
T Consensus 77 L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~ 156 (461)
T PLN02172 77 LRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGF 156 (461)
T ss_pred hhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCc
Confidence 00 0 034666777777788887 66764 888764 22 444332 2
Q ss_pred --EEecceEEEecCC--CCc
Q 013810 321 --EVPYGLLVWSTGV--GPS 336 (436)
Q Consensus 321 --~i~~D~vi~a~G~--~p~ 336 (436)
+..+|.||+|+|. .|.
T Consensus 157 ~~~~~~d~VIvAtG~~~~P~ 176 (461)
T PLN02172 157 SKDEIFDAVVVCNGHYTEPN 176 (461)
T ss_pred eEEEEcCEEEEeccCCCCCc
Confidence 4679999999994 554
No 297
>PLN02529 lysine-specific histone demethylase 1
Probab=97.63 E-value=5.3e-05 Score=78.82 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=35.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
..++|+|||||+|||+||..|++.|++|+|+|+.+..+.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 457999999999999999999999999999999877544
No 298
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.61 E-value=6.7e-05 Score=75.14 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~ 95 (436)
.+.||+|||||++|+++|++|++. |.+|+|+|++.
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 357999999999999999999987 89999999864
No 299
>PRK07121 hypothetical protein; Validated
Probab=97.61 E-value=8.5e-05 Score=75.10 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=33.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..||||||+|.||++||+.+++.|.+|+||||....
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 579999999999999999999999999999998754
No 300
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.58 E-value=5.8e-05 Score=76.36 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcEEecceEEEecCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
..+.+.+.+.+++.|++++.++ |.+|.. + +|.+.+|+++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 4667778888999999999995 888752 2 5777889899999999998854
No 301
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.57 E-value=5.9e-05 Score=77.64 Aligned_cols=35 Identities=26% Similarity=0.179 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+.||||||+|.|||+||+.+++.|.+|+||||...
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~ 37 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 46999999999999999999999999999997654
No 302
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.56 E-value=0.00025 Score=65.09 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
+..+|+|||||.-|+++|.+|++.|.++.|+|+.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf 39 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQF 39 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEecc
Confidence 3478999999999999999999999999999954
No 303
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.55 E-value=0.00029 Score=71.01 Aligned_cols=84 Identities=24% Similarity=0.306 Sum_probs=62.7
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
++|+|||+|.+|+++|..|.+.| .+|+++++.+ ......+.+.|++.||+++.+. +.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G--------------~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~~-- 74 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG--------------ARVTVVDDGD------DERHRALAAILEALGATVRLGPGPT-- 74 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCcc--
Confidence 48999999999999999998766 8999998753 1233445667888899998874 22
Q ss_pred eCCeEEEcCCcEEecceEEEecCCCCc-hh---cccCCCCC
Q 013810 310 DSQKLILNDGTEVPYGLLVWSTGVGPS-TL---VKSLDLPK 346 (436)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~---~~~~~l~~ 346 (436)
....+|+||+++|..|+ ++ +++.|+++
T Consensus 75 ----------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 ----------LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred ----------ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 12458999999999998 44 34445544
No 304
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.55 E-value=0.00023 Score=71.65 Aligned_cols=88 Identities=23% Similarity=0.316 Sum_probs=63.2
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ + .++.++.....+.+++.|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g--------------~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 207 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAG--------------HTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEG 207 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCC
Confidence 3469999999999999999998765 899999985421 2 234556666667788899
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCC
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
|+++.+.....+ +. .++....+|.|++|+|..
T Consensus 208 v~~~~~~~v~~~---~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 208 IDFVTNTEIGVD---IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred CEEECCCEeCCc---cC-HHHHHhhCCEEEEccCCC
Confidence 999988522111 11 112235799999999997
No 305
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.54 E-value=0.00033 Score=65.36 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
...||+|||||.+|.+.|..|++.|.+|.||||+
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3579999999999999999999999999999976
No 306
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.54 E-value=6.7e-05 Score=74.78 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=31.7
Q ss_pred cEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~ 97 (436)
||||||||.||++||+.+++.| .+|+||||.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 6999999999999999999999 999999998654
No 307
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.53 E-value=9.1e-05 Score=77.59 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=35.8
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
...++|+|||||+|||+||..|.+.|++|+|+|+++..+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 3468899999999999999999999999999999877643
No 308
>PLN02487 zeta-carotene desaturase
Probab=97.53 E-value=0.00011 Score=74.73 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
.+++|+|||||++||++|..|++.|++|+|+|+.+...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 44699999999999999999999999999999987654
No 309
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00011 Score=70.51 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=37.0
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
....+|+|||+|.|||+||..|.+.|++|+|+|.+++++.+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 34579999999999999999999999999999999887654
No 310
>PRK07236 hypothetical protein; Provisional
Probab=97.52 E-value=0.00055 Score=67.00 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=61.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCc------ccHHHHHHHHH------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS------FDDRLRHYATT------------ 292 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~~------~~~~~~~~~~~------------ 292 (436)
+|+|||||++|+.+|..|++.+ .+|+++++.+ .... +.+...+.+.+
T Consensus 8 ~ViIVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~ 73 (386)
T PRK07236 8 RAVVIGGSLGGLFAALLLRRAG--------------WDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVP 73 (386)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccC
Confidence 8999999999999999999865 8899998853 2211 22322222221
Q ss_pred -------------------------------HHHh--cCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCC
Q 013810 293 -------------------------------QLSK--SGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 293 -------------------------------~l~~--~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~ 334 (436)
.|.+ .+++++.+. +++++. +. +.+++|+++.+|+||.|-|..
T Consensus 74 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 74 SRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR 153 (386)
T ss_pred ccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 1111 134566664 777653 23 667899999999999999976
Q ss_pred Cc
Q 013810 335 PS 336 (436)
Q Consensus 335 p~ 336 (436)
..
T Consensus 154 S~ 155 (386)
T PRK07236 154 ST 155 (386)
T ss_pred ch
Confidence 64
No 311
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.52 E-value=0.00028 Score=70.88 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=63.4
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ + .++.++.....+.+.+.|
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~g 207 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAG--------------HKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEG 207 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCC
Confidence 4468999999999999999998765 899999985422 1 134455555667788899
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCC
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
|+++.++....+ +.. +.....+|.||+|+|..+
T Consensus 208 v~~~~~~~v~~~---~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 208 IEFRTNVEVGKD---ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred cEEEeCCEECCc---CCH-HHHHhhCCEEEEecCCCC
Confidence 999988632211 111 112357999999999973
No 312
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.51 E-value=9.1e-05 Score=75.65 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+||+|||||..|+++|+.|+++|++|+|||+.+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 4899999999999999999999999999999965
No 313
>PLN02676 polyamine oxidase
Probab=97.51 E-value=9e-05 Score=74.50 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~~~~ 99 (436)
.+++|+|||||++||+||.+|++.|. +|+|+|+++.++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 35799999999999999999999998 5999999987544
No 314
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.51 E-value=7.9e-05 Score=73.71 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCEEEec-ceEEEeC--Ce---EEEcCCcEEecceEEEecCCCCchhcccCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~-~v~~i~~--~~---v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (436)
..+...+.+.+++.|++++.+ .|++++. +. |.+. +.++.+|.||+|+|.....++...+
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g 265 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG 265 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence 355667777888899999988 4887753 33 3344 4479999999999987665544443
No 315
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.51 E-value=8.9e-05 Score=76.49 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...||||||||.|||+||+.+++.|.+|+||||..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 35799999999999999999999999999999874
No 316
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.51 E-value=0.00022 Score=74.37 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=64.7
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ + .++.++.+...+.+.+.|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~G 257 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG--------------HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMG 257 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcC
Confidence 4468999999999999999999766 899999985321 1 234556666667788899
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.++....+ +.+.+. ...+|.||+|+|..+.
T Consensus 258 v~i~~~~~v~~d---v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 258 AEFRFNTVFGRD---ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred CEEEeCCcccCc---cCHHHH-HhhcCEEEEEcCCCCC
Confidence 999988632221 222222 2359999999998754
No 317
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.51 E-value=0.00062 Score=66.03 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=61.4
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-C---------cccHHHHH--------------
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-S---------SFDDRLRH-------------- 288 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-~---------~~~~~~~~-------------- 288 (436)
|+|||+|..|+.+|..|++. .++.+|.++++.+.. + ..++....
T Consensus 2 viIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~ 69 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYE 69 (370)
T ss_pred EEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCE
Confidence 89999999999999999853 134889999885421 1 11111100
Q ss_pred --------------------HHHHH-HHhcCCEEEec-ceEEEeCCeEEEcCCcEEecceEEEecCCCC
Q 013810 289 --------------------YATTQ-LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 289 --------------------~~~~~-l~~~gV~i~~~-~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
.+.+. +++.+..++.+ +|.+++.++|++++|+++.+|.||.|.|..+
T Consensus 70 v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 70 VRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred EECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 01111 22223335555 5888888889999999999999999999766
No 318
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.50 E-value=0.00011 Score=74.94 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=33.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
...||||||+|.|||+||+.+++.|.+|+||||....
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 3589999999999999999999999999999997643
No 319
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.50 E-value=8.6e-05 Score=71.25 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=33.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCcceec
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFT 100 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~~~~~ 100 (436)
..+|||||||.|||+||.+|.+.|+ +++|+|.+++.+.+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 4589999999999999999997766 59999999876543
No 320
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.49 E-value=9.4e-05 Score=68.05 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
.++|+|||+|.+||+||+.|.++ ++|||+|.+.+.+.+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 47899999999999999999997 899999999887654
No 321
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.49 E-value=0.0013 Score=64.42 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+++.|++++.+. +++++. + .+++++|+++.+|+||.|.|....
T Consensus 115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 115 LVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 44455566677789998874 777753 3 355678888999999999999874
No 322
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.48 E-value=0.0013 Score=61.52 Aligned_cols=91 Identities=24% Similarity=0.369 Sum_probs=65.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------------------------------ 281 (436)
.|+|||+|++|+-+|..|++.+ .+|+++++.+....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--------------LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 5999999999999999998755 78888887521100
Q ss_pred --------------------c-cHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCe--EEEcC-CcEEecceEEEecCCC
Q 013810 282 --------------------F-DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK--LILND-GTEVPYGLLVWSTGVG 334 (436)
Q Consensus 282 --------------------~-~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~--v~~~~-g~~i~~D~vi~a~G~~ 334 (436)
+ ...+.+.+.+.+.+.|++++.+. ++++. ++. +.+.+ +.++.+|.||.|.|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 0 12455667777778899998884 76653 343 33343 4579999999999986
Q ss_pred Cc
Q 013810 335 PS 336 (436)
Q Consensus 335 p~ 336 (436)
..
T Consensus 148 s~ 149 (295)
T TIGR02032 148 SI 149 (295)
T ss_pred hH
Confidence 53
No 323
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.48 E-value=0.0002 Score=72.20 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|||+|.+|+++|..|++.|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999764
No 324
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.47 E-value=0.00011 Score=69.47 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+.+|||||||.+|+++|..|.+.|++|+|+|+....
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 368999999999999999999999999999986543
No 325
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.47 E-value=0.00011 Score=69.54 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=64.9
Q ss_pred CcEEEECCchHHHHHHHhccc--------------CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhh
Q 013810 63 PRVVVLGSGWAGCRLMKGIDT--------------SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAIS 128 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~--------------~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (436)
-++|||||||.|+.+|-+|+. ...+|||||..+... ... ...+.++.....
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-----~mF----------dkrl~~yae~~f 283 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-----NMF----------DKRLVEYAENQF 283 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-----HHH----------HHHHHHHHHHHh
Confidence 579999999999999999953 346799999876521 111 112223333334
Q ss_pred cCCCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 129 REPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 129 ~~~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
.+.++.+..+ .|..++ ...+.+++. +|+. .+++|--||.|||..++.
T Consensus 284 ~~~~I~~~~~t~Vk~V~--~~~I~~~~~-~g~~------~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 284 VRDGIDLDTGTMVKKVT--EKTIHAKTK-DGEI------EEIPYGLLVWATGNGPRP 331 (491)
T ss_pred hhccceeecccEEEeec--CcEEEEEcC-CCce------eeecceEEEecCCCCCch
Confidence 5567888777 555554 345555543 4542 289999999999987764
No 326
>PRK06834 hypothetical protein; Provisional
Probab=97.46 E-value=0.0016 Score=65.61 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+++.||+++.++ +++++. ++ +++.+|+++.+|+||.|.|..+.
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 33445566677799999884 777753 33 45567888999999999998764
No 327
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.45 E-value=9.7e-05 Score=78.49 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
++|+|||||||||+||+.|++. |++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999997 899999999875
No 328
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.44 E-value=9.9e-05 Score=74.05 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=32.6
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
+|+|||||.+||+||..|++.|++|+|+|+++..+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999999999999999999999999999988754
No 329
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.44 E-value=0.00013 Score=71.83 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=31.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccC-CC-eEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS-LY-DVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~-g~-~v~lie~~~ 95 (436)
..+||+|||||.+|+++|++|++. |. +|+|||+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 458999999999999999999985 85 899999964
No 330
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.44 E-value=0.00011 Score=75.23 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...||||||+|.|||+||+.+++.|.+|+||||...
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 347999999999999999999999999999998743
No 331
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.42 E-value=0.00015 Score=74.55 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
...||||||+|.|||+||+.+++.|.+|+|+|+.+...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 35799999999999999999999999999999987643
No 332
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.41 E-value=0.00014 Score=74.49 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=32.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...||||||+|.|||+||+.+++.|.+|+|||+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35799999999999999999999999999999987
No 333
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.41 E-value=0.0004 Score=72.38 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=65.2
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+..|..|+..| .+|+++++.+.+ + .++.+..+...+.+++.|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G 374 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--------------VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG 374 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999866 899999986421 1 245566666667888999
Q ss_pred CEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.+. +.. .+.+.+ ....+|.||+|+|..+.
T Consensus 375 v~~~~~~~v~~----~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 375 IDFHLNCEIGR----DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred eEEEcCCccCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 9999885 321 122222 23468999999998654
No 334
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.41 E-value=0.00013 Score=75.46 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...||||||||.|||+||+.+++.|.+|+||||...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 357999999999999999999999999999998754
No 335
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.40 E-value=0.00016 Score=74.51 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..||||||||.|||+||+.+++.|.+|+||||..
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 4799999999999999999999999999999864
No 336
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.39 E-value=0.00012 Score=75.85 Aligned_cols=35 Identities=29% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||||||||.|||+||+.+++.|.+|+||||...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 47999999999999999999999999999998754
No 337
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.39 E-value=0.0016 Score=63.76 Aligned_cols=89 Identities=25% Similarity=0.412 Sum_probs=61.7
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------------------------------
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-------------------------------- 280 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-------------------------------- 280 (436)
|+|||+|+.|+-+|..|++.+ .+|+|+++.+...
T Consensus 2 viIiGaG~AGl~~A~~la~~g--------------~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPG--------------LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYR 67 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEe
Confidence 899999999999999988654 6777776532100
Q ss_pred -------------cc-cHHHHHHHHHHHHhcCCEEEecceEEEeCC-----eEEEcCCcEEecceEEEecCCCC
Q 013810 281 -------------SF-DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 281 -------------~~-~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~-----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
.. ...+.+.+.+.+.+.|++++.+++..++.+ .|.+.+|+++.+|.||.|+|..+
T Consensus 68 ~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 68 FPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00 123334455556677898886666666432 35667888899999999999655
No 338
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.39 E-value=0.00013 Score=76.46 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++|+|||||.+|+++|++|+++|.+|+|+|+...
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 36999999999999999999999999999999753
No 339
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.39 E-value=0.00015 Score=75.23 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...||||||||.|||+||+.+++.|.+|+|||+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 457999999999999999999999999999997543
No 340
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.39 E-value=0.00016 Score=74.91 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+||||||||..|+++|+.|+++|++|+|||+++.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~ 105 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDF 105 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 458999999999999999999999999999999854
No 341
>PLN02612 phytoene desaturase
Probab=97.36 E-value=0.0002 Score=73.40 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=34.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..++|+|||||++||+||.+|.+.|++|+|+|+.+..+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence 35789999999999999999999999999999987643
No 342
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.36 E-value=0.00014 Score=74.88 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=30.9
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
||||||||.|||+||+.+++.|.+|+||||...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 699999999999999999999999999998753
No 343
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00018 Score=65.80 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCEEEec-ceEEEe--CCe---EEEcCCcE--EecceEEEecCCCCc-hhc------cc--CCCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDGTE--VPYGLLVWSTGVGPS-TLV------KS--LDLPK 346 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~-~v~~i~--~~~---v~~~~g~~--i~~D~vi~a~G~~p~-~~~------~~--~~l~~ 346 (436)
-.+.+.+...+++.|.-+.++ +|.+.+ .++ |.+.+... +.+|..++|+|.--. -+. .+ +++.+
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi 337 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDI 337 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhccc
Confidence 466778888999999988888 466554 333 34445443 668888998885322 110 00 01111
Q ss_pred ---------------CCC----CcEEeCCCCCCC----CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 347 ---------------SPG----GRIGIDEWLRVP----SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 347 ---------------~~~----G~i~vd~~~~~t----~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
.+. =.+.+|+++|.. ...|+||||.+.++.++--. ..-...|+..|..||+.|.
T Consensus 338 ~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~e---gcGsGVaivta~~aa~qi~ 414 (421)
T COG3075 338 LQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAE---GCGSGVAIVTALHAAEQIA 414 (421)
T ss_pred ccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHh---cCCcchHHHHHHHHHHHHH
Confidence 011 116678888731 36799999999987663111 1123456777777777776
Q ss_pred hh
Q 013810 404 LL 405 (436)
Q Consensus 404 ~~ 405 (436)
..
T Consensus 415 ~~ 416 (421)
T COG3075 415 ER 416 (421)
T ss_pred HH
Confidence 43
No 344
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.35 E-value=0.00015 Score=73.59 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||||||+| ||++||+++++.|.+|+|||+.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 4799999999 999999999999999999998764
No 345
>PLN02661 Putative thiazole synthesis
Probab=97.35 E-value=0.005 Score=58.30 Aligned_cols=159 Identities=17% Similarity=0.168 Sum_probs=91.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc----------------------------cc
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----------------------------FD 283 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~----------------------------~~ 283 (436)
.|+|||+|..|+-+|..|++. ++.+|+++++...... ++
T Consensus 94 DVlIVGaG~AGl~AA~~La~~-------------~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd 160 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKN-------------PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYD 160 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHc-------------CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcc
Confidence 799999999999999999853 2378888887432100 00
Q ss_pred -----------HHHHHHHH-HHHHhcCCEEEecc-eEEEe--CC---eEEE------cC--C------cEEecceEEEec
Q 013810 284 -----------DRLRHYAT-TQLSKSGVRLVRGI-VKDVD--SQ---KLIL------ND--G------TEVPYGLLVWST 331 (436)
Q Consensus 284 -----------~~~~~~~~-~~l~~~gV~i~~~~-v~~i~--~~---~v~~------~~--g------~~i~~D~vi~a~ 331 (436)
..+...+. +.+++.||+++.+. +.++- ++ ++.+ .+ + ..+.++.||+||
T Consensus 161 ~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 161 EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 01111222 23334688888873 55542 22 2332 11 1 258999999999
Q ss_pred CCCCc---hh---cccCCCCCCCCC----------cEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHH
Q 013810 332 GVGPS---TL---VKSLDLPKSPGG----------RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQL 395 (436)
Q Consensus 332 G~~p~---~~---~~~~~l~~~~~G----------~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g 395 (436)
|..+. .. +..+++...-.| ...|+..- .-+|++|++|-.+.- ..|.+.+-+....=.-.|
T Consensus 241 Gh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~--ev~pgl~~~gm~~~~--~~g~~rmgp~fg~m~~sg 316 (357)
T PLN02661 241 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTR--EVVPGMIVTGMEVAE--IDGSPRMGPTFGAMMISG 316 (357)
T ss_pred CCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccC--cccCCEEEeccchhh--hcCCCccCchhHhHHhhh
Confidence 97663 11 222222110011 01122222 248999999988763 234444444555556889
Q ss_pred HHHHhhhhhhcC
Q 013810 396 HLFQKPSFLLAR 407 (436)
Q Consensus 396 ~~aa~~i~~~~~ 407 (436)
+.||+-|+....
T Consensus 317 ~k~a~~~~~~l~ 328 (357)
T PLN02661 317 QKAAHLALKALG 328 (357)
T ss_pred HHHHHHHHHHHc
Confidence 999998886553
No 346
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.33 E-value=0.00017 Score=74.21 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
..||||||||.|||+||+.+++. |.+|+||||...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 47999999999999999999976 589999999754
No 347
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.32 E-value=0.00019 Score=67.53 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=29.9
Q ss_pred CcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~ 97 (436)
+|+||||+|+||..+|.+|++.+ .+|+|+|+.+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 58999999999999999999987 699999998753
No 348
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.32 E-value=0.00017 Score=74.55 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
..||||||||.|||+||+.+++. |.+|+||||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 47999999999999999999997 999999998753
No 349
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.31 E-value=0.0023 Score=63.00 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+.+.|++++.+. |++++. +. +++++|+++.+|+||.|.|....
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 455666667777899999884 777753 33 56678888999999999998654
No 350
>PLN02697 lycopene epsilon cyclase
Probab=97.31 E-value=0.0025 Score=64.46 Aligned_cols=91 Identities=23% Similarity=0.384 Sum_probs=62.6
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-Cc----------------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-SS---------------------------- 281 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-~~---------------------------- 281 (436)
-.|+|||+|+.|+-+|..+++.+ .+|.++++.... ..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~G--------------l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLG--------------LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--------------CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 37999999999999999998754 566666542110 00
Q ss_pred --------------c-cHHHHHHHHHHHHhcCCEEEecceEEEeC--Ce---EEEcCCcEEecceEEEecCCCC
Q 013810 282 --------------F-DDRLRHYATTQLSKSGVRLVRGIVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 282 --------------~-~~~~~~~~~~~l~~~gV~i~~~~v~~i~~--~~---v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+ ...+.+.+.+.+.+.|++++..+|++++. +. +.+.+|.++.+|.||.|.|...
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 12233445556667799997667777753 33 3457788999999999999765
No 351
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.30 E-value=0.00019 Score=74.77 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||||||||.|||.||+.+++.|.+|+|||+.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 47999999999999999999999999999998654
No 352
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.30 E-value=0.00067 Score=71.04 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=63.0
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ + .++.++.....+.+++.|
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G--------------~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G 391 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNG--------------VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMG 391 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999866 899999985421 1 234555555567788889
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.+.... ..+.+.+ ....+|.|++|+|....
T Consensus 392 v~~~~~~~v~---~~i~~~~-~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 392 IEFELNCEVG---KDISLES-LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred eEEECCCEeC---CcCCHHH-HHhcCCEEEEeCCCCCC
Confidence 9999885211 1111111 12369999999997543
No 353
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.30 E-value=0.00019 Score=73.91 Aligned_cols=35 Identities=29% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||||||+|.|||+||+.+++.|.+|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 47999999999999999999999999999998744
No 354
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.30 E-value=0.00027 Score=69.76 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEe--CC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.++.+.+.+.++..|.+++.++ |++|. ++ +|++.+|+++.|+.||....+.|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 4677777778888999999995 88883 22 377889999999999999888876
No 355
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.29 E-value=0.0024 Score=62.72 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=33.8
Q ss_pred HHHHHHHhc-CCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 289 YATTQLSKS-GVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 289 ~~~~~l~~~-gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+. +|+++.++ +.+++. ++ +.+.+|+++.+|+||.|.|....
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 344444444 48998884 777753 33 55678888999999999997643
No 356
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.27 E-value=0.0012 Score=65.23 Aligned_cols=89 Identities=12% Similarity=0.186 Sum_probs=55.3
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc--------ccH---HHHHHHHHHHHhcC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--------FDD---RLRHYATTQLSKSG 298 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~--------~~~---~~~~~~~~~l~~~g 298 (436)
+++|+|||+|++|+.+|..|... .+.+|+++++.+.... ..+ .+.+.+.+.+...+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~-------------~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~ 105 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKH-------------ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPN 105 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh-------------cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCC
Confidence 35899999999999999977532 1389999999642211 112 33334444455677
Q ss_pred CEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
++++.+. |.. .+..++ -...+|.||+|+|..+.
T Consensus 106 v~f~gnv~VG~----Dvt~ee-L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 106 YRFFGNVHVGV----DLKMEE-LRNHYNCVIFCCGASEV 139 (506)
T ss_pred eEEEeeeEecC----ccCHHH-HHhcCCEEEEEcCCCCC
Confidence 8887442 211 111111 12368999999998864
No 357
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.25 E-value=0.00024 Score=71.28 Aligned_cols=62 Identities=16% Similarity=0.303 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--C-e--EEE---cCC--cEEecceEEEecCCCCchhcccCCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q-K--LIL---NDG--TEVPYGLLVWSTGVGPSTLVKSLDLP 345 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~-~--v~~---~~g--~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (436)
..+...+.+.+++.|++++.++ |.+++. + . +.+ .+| .++.+|.||+|+|.....+.+.+|+.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 4667777788888999999994 888753 2 2 322 223 26899999999999887777777765
No 358
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.25 E-value=0.00024 Score=73.03 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHhcc----cCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGID----TSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~----~~g~~v~lie~~~~ 96 (436)
||||||||.|||+||+.++ +.|.+|+||||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999998 67999999998753
No 359
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.24 E-value=0.0028 Score=62.05 Aligned_cols=90 Identities=27% Similarity=0.393 Sum_probs=63.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-C-CCCc-----c----------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSS-----F---------------------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l~~-----~---------------------- 282 (436)
.|+|||||++|+-+|..|++.| .+|+|+++. . .... +
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G--------------~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~ 69 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAG--------------LDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGV 69 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccC
Confidence 7999999999999999999865 666666664 1 1100 0
Q ss_pred ---------------------------------cHHHHHHHHHHHHhcC-CEEEecc-eEEEeCC----eEEEc-CCcEE
Q 013810 283 ---------------------------------DDRLRHYATTQLSKSG-VRLVRGI-VKDVDSQ----KLILN-DGTEV 322 (436)
Q Consensus 283 ---------------------------------~~~~~~~~~~~l~~~g-V~i~~~~-v~~i~~~----~v~~~-~g~~i 322 (436)
...+.+.+.+.+.+.+ |+++.+. |+.++.+ .++++ ||+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~ 149 (387)
T COG0654 70 PPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETL 149 (387)
T ss_pred CceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEE
Confidence 1233445555565554 8888874 7777643 36777 99999
Q ss_pred ecceEEEecCCCC
Q 013810 323 PYGLLVWSTGVGP 335 (436)
Q Consensus 323 ~~D~vi~a~G~~p 335 (436)
.||+||-|-|...
T Consensus 150 ~a~llVgADG~~S 162 (387)
T COG0654 150 DADLLVGADGANS 162 (387)
T ss_pred ecCEEEECCCCch
Confidence 9999999999654
No 360
>PRK08275 putative oxidoreductase; Provisional
Probab=97.23 E-value=0.00024 Score=72.83 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=38.0
Q ss_pred CcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 350 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 350 G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
|.|.||.+++ |++|++||+|||+... ......|+-.|+.|++++..+
T Consensus 357 Ggi~~d~~~~-t~i~gl~a~Ge~~~~~--------~~~~~~~~~~G~~a~~~~~~~ 403 (554)
T PRK08275 357 SGVWVNEKAE-TTVPGLYAAGDMASVP--------HNYMLGAFTYGWFAGENAAEY 403 (554)
T ss_pred CcEEECCCCc-cCCCCEEECcccCCch--------hHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999 9999999999997531 355667888888888887654
No 361
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.23 E-value=0.00029 Score=70.76 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcC-CEEEecc-eEEEeC--Ce---EEEc---CCc--EEecceEEEecCCCCchhcccCCCC
Q 013810 284 DRLRHYATTQLSKSG-VRLVRGI-VKDVDS--QK---LILN---DGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (436)
Q Consensus 284 ~~~~~~~~~~l~~~g-V~i~~~~-v~~i~~--~~---v~~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (436)
..+.+.+.+.+++.| ++++.++ |++++. ++ +.+. +|+ ++.+|.||+|+|.....+++.+|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 456677777788876 8999985 877753 32 4432 353 6899999999999887777777665
No 362
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.21 E-value=0.0025 Score=62.84 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 289 YATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 289 ~~~~~l~~~gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.|++++.+ ++.+++. ++ |.+.+|+++.+|+||.|.|....
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 3444555668888877 4777643 33 56678888999999999998653
No 363
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.21 E-value=0.0004 Score=71.03 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
..+||||||+| +|++||+.+++.|.+|+||||.+.+...
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 36899999999 8999999999999999999998765443
No 364
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.21 E-value=0.00028 Score=72.21 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+||||||+|.||++||+.+++.|.+|+|||+.+..
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999999999999999987543
No 365
>PRK09126 hypothetical protein; Provisional
Probab=97.18 E-value=0.0031 Score=61.81 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=31.7
Q ss_pred hcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
..|++++.+. +.+++. + .|.+++|+++.+|+||.|.|....
T Consensus 123 ~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred CCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 3589999884 777643 3 366678889999999999998764
No 366
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.18 E-value=0.00051 Score=65.66 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=28.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~ 97 (436)
..++|+|||||.++..++..|.+.+. +|++|-++..+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 45899999999999999999988654 79999887643
No 367
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.17 E-value=0.0026 Score=64.63 Aligned_cols=88 Identities=25% Similarity=0.358 Sum_probs=61.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC------Cc---------------c-------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL------SS---------------F------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l------~~---------------~------- 282 (436)
.|+|||||+.|++.|..+++.| .+|.|+++.. .+ +. +
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G--------------~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMG--------------AKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcC--------------CcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 6999999999999999999866 7788887641 11 00 0
Q ss_pred --------------------------c-HHHHHHHHHHHHhc-CCEEEecceEEEe--CC---eEEEcCCcEEecceEEE
Q 013810 283 --------------------------D-DRLRHYATTQLSKS-GVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (436)
Q Consensus 283 --------------------------~-~~~~~~~~~~l~~~-gV~i~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~ 329 (436)
+ ..+...+.+.+.+. |++++.+.+.++. ++ +|.+.+|.++.|+.||+
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIl 151 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVL 151 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence 0 01122333444444 7888777776663 33 47788899999999999
Q ss_pred ecCC
Q 013810 330 STGV 333 (436)
Q Consensus 330 a~G~ 333 (436)
|+|.
T Consensus 152 ATGT 155 (618)
T PRK05192 152 TTGT 155 (618)
T ss_pred eeCc
Confidence 9994
No 368
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.16 E-value=0.00085 Score=60.34 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=30.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC------CeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g------~~v~lie~~~ 95 (436)
+.++|+|||||..|+.+|++|.+.+ ++|+|||...
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 3489999999999999999999866 7899999653
No 369
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.00042 Score=63.29 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
.|++|||+|.+|+.+|..|++.|.+|.|||+.++.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 689999999999999999999999999999998743
No 370
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.16 E-value=0.00033 Score=71.70 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=39.8
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.|.|.||.+.| |.+|++||+|+|++... |. ..-......|+..|++|++++..+.
T Consensus 348 ~GGi~vd~~~~-t~IpGLyAaGE~~gg~h--G~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 348 MGGIRINEDCE-TNIPGLFACGEVAGGVH--GANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred cCCEEECCCCc-ccCCCeEeccccccCCC--CCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 46699999999 89999999999975321 11 1112345578889999999987653
No 371
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.16 E-value=0.0044 Score=60.59 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcC-CEEEecceEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKSG-VRLVRGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~g-V~i~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+++.+ ++++..++++++. + .|.+.+|+++.+|.||.|.|....
T Consensus 113 l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 113 IERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 3445555666666 8888335777642 3 356678888999999999998654
No 372
>PRK12839 hypothetical protein; Provisional
Probab=97.16 E-value=0.00043 Score=71.02 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
...||+|||+|.||++||+.+++.|.+|+|||+....
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3589999999999999999999999999999987654
No 373
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.15 E-value=0.00038 Score=70.19 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
+||+|||+||+|+.+|..|++.|++|++||++....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 589999999999999999999999999999987654
No 374
>PRK07588 hypothetical protein; Provisional
Probab=97.14 E-value=0.0039 Score=61.08 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=30.8
Q ss_pred cCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 297 SGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+++++.++ |++++. ++ |.+++|+++.+|+||-|-|....
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 368888884 777753 33 56789989999999999997554
No 375
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.13 E-value=0.003 Score=61.45 Aligned_cols=91 Identities=20% Similarity=0.393 Sum_probs=62.5
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--Cc----------c------------------
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SS----------F------------------ 282 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--~~----------~------------------ 282 (436)
|+|||+|++|+-+|..|.+. +.+.+|.++++.+.. +. .
T Consensus 2 viIvGaGpAGlslA~~l~~~------------~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA------------RPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc------------CCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 89999999999999999332 134788888764211 10 0
Q ss_pred ----------------cHHHHHHHHHHHHhcCCEEEecceEEEeCC----eEEEcCCcEEecceEEEecCCCC
Q 013810 283 ----------------DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 283 ----------------~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
...+.+.+.+.+.+.++.++..+|.+|+.. .|++++|+++.++.||-|.|..+
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 123344455555555666666668888653 35788999999999999999654
No 376
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.11 E-value=0.00048 Score=76.46 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=35.2
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
+...||||||+|.||++||+.+++.|.+|+|+||.+...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 456899999999999999999999999999999986553
No 377
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0033 Score=54.46 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=69.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHH-Hhhh--cCCCCccEEEEEeCCCCCCcc-----cHHHHHHHHHHHHhcCCEEEe
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDV-RQRY--SHVKDYIHVTLIEANEILSSF-----DDRLRHYATTQLSKSGVRLVR 303 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~-~~~~--~~~~~~~~V~lv~~~~~l~~~-----~~~~~~~~~~~l~~~gV~i~~ 303 (436)
+|+|||+|+.+...|.++++.--+.+ .+-+ ....++-+.+--..-+-+|.| ++++.+.+++.-++.|.++++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t 89 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT 89 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeee
Confidence 89999999999999998876320000 0000 111223333332221223333 468888888899999999999
Q ss_pred cceEEEeCC--e-EEEcCCcEEecceEEEecCCCCc
Q 013810 304 GIVKDVDSQ--K-LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 304 ~~v~~i~~~--~-v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+|.+++-. - ..++|.+.+.+|.||+|+|....
T Consensus 90 EtVskv~~sskpF~l~td~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 90 ETVSKVDLSSKPFKLWTDARPVTADAVILATGASAK 125 (322)
T ss_pred eehhhccccCCCeEEEecCCceeeeeEEEeccccee
Confidence 988777643 2 33457778999999999998764
No 378
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.10 E-value=0.0011 Score=70.45 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=31.2
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
..+++|+|||+|+.|+.+|..|+..| .+|+++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G--------------h~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG--------------HNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEccc
Confidence 45679999999999999999999765 999999974
No 379
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.09 E-value=0.00045 Score=71.24 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..||||||||.|||+||+.+++. .+|+|+||..
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 47999999999999999999976 8999999874
No 380
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.08 E-value=0.00073 Score=59.90 Aligned_cols=90 Identities=26% Similarity=0.307 Sum_probs=63.4
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEec--------
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-------- 304 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~-------- 304 (436)
.+|||||..|+.+|..|+.+. +..+|.|+..+++.... .-.+.+.+++++..|+=...
T Consensus 2 fivvgggiagvscaeqla~~~------------psa~illitass~vksv--tn~~~i~~ylekfdv~eq~~~elg~~f~ 67 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKSV--TNYQKIGQYLEKFDVKEQNCHELGPDFR 67 (334)
T ss_pred eEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHHH--hhHHHHHHHHHhcCccccchhhhcccHH
Confidence 589999999999999999864 55799999887654322 22233445555544432111
Q ss_pred ----ceEEEe--CCeEEEcCCcEEecceEEEecCCCCc
Q 013810 305 ----IVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 305 ----~v~~i~--~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.|..++ +..+.+.+|.++.++.+++|+|.+|-
T Consensus 68 ~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 68 RFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred HHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcc
Confidence 122222 36789999999999999999999996
No 381
>PRK13984 putative oxidoreductase; Provisional
Probab=97.08 E-value=0.0014 Score=68.15 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=63.3
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (436)
.+.++|+|||+|+.|+..|..|.+.+ .+|+++++.+.. + .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--------------~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG--------------YEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 45578999999999999999998766 899999885422 1 13345555556678889
Q ss_pred CCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCC
Q 013810 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 298 gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
||+++.++....+ +.+++ ....+|.||+|+|..+
T Consensus 347 gv~~~~~~~v~~~---~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 347 GVKIHLNTRVGKD---IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred CcEEECCCEeCCc---CCHHH-HHhcCCEEEEEcCcCC
Confidence 9999988522111 11111 2357999999999764
No 382
>PRK06184 hypothetical protein; Provisional
Probab=97.07 E-value=0.0049 Score=62.54 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEE---cCCcEEecceEEEecCCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LIL---NDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~---~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+.+.|++++.++ +.+++. +. +.+ .+++++.+|.||.|.|...
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 34556667777899999984 777753 33 334 4556899999999999765
No 383
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.07 E-value=0.00035 Score=72.09 Aligned_cols=54 Identities=13% Similarity=0.053 Sum_probs=38.5
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.+|.+.+ |++|++||+|+|++.. .|. +.-......+.-.|+.|++++..+
T Consensus 370 ~gG~~~d~~~~-t~i~gL~a~Ge~~~~~--hg~nrl~~~sl~~~~v~g~~Ag~~aa~~ 424 (603)
T TIGR01811 370 MGGLWVDYDQM-TNIPGLFAAGECDFSQ--HGANRLGANSLLSAIADGYFALPFTIPN 424 (603)
T ss_pred CCCeeECCCCc-ccCCCEEECcccccCc--CCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999 9999999999997531 121 111234566778888888887654
No 384
>PLN03000 amine oxidase
Probab=97.06 E-value=0.00057 Score=71.89 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=35.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
...+|+|||||++||+||..|++.|++|+|+|+.+..+.+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence 3579999999999999999999999999999998875443
No 385
>PRK02106 choline dehydrogenase; Validated
Probab=97.05 E-value=0.00065 Score=69.84 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~ 96 (436)
..+|+||||||.||+.+|.+|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 34899999999999999999999 8999999999853
No 386
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.04 E-value=0.0007 Score=67.30 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
...||+|||||..|+.+|..++.+|++|+|+|+.+.-
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A 47 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA 47 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc
Confidence 5689999999999999999999999999999998653
No 387
>PRK07045 putative monooxygenase; Reviewed
Probab=97.04 E-value=0.0062 Score=59.64 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=36.2
Q ss_pred HHHHHHHHHH-hcCCEEEecc-eEEEeC--C----eEEEcCCcEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLS-KSGVRLVRGI-VKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~-~~gV~i~~~~-v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+. ..|++++.++ +++++. + .|.+++|+++.+|+||-|.|....
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 3444455554 3479999884 777753 2 367788999999999999997653
No 388
>PRK08244 hypothetical protein; Provisional
Probab=97.04 E-value=0.0057 Score=61.95 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEc--CC-cEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILN--DG-TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~--~g-~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+++.|++++.+. +.+++ ++++ .+. +| +++.+|+||.|.|....
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 44555666777899999884 77764 3333 333 45 47999999999998763
No 389
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.04 E-value=0.00052 Score=69.67 Aligned_cols=37 Identities=27% Similarity=0.226 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.++||||||||.|||.||..+++.|.+|+|+||....
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 4589999999999999999999999999999976543
No 390
>PRK05868 hypothetical protein; Validated
Probab=97.04 E-value=0.0055 Score=59.59 Aligned_cols=40 Identities=8% Similarity=0.263 Sum_probs=31.4
Q ss_pred cCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 297 SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.|++++.++ +++++. + .|.+++|+++.+|+||-|-|....
T Consensus 117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 578888874 777753 3 366789999999999999998765
No 391
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.03 E-value=0.00061 Score=64.63 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCe--EEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~--v~lie~~~~~~~ 99 (436)
..++|+|+|||.+||++|++|++.+.+ |+|+|.+++.+.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 357899999999999999999997766 567999887543
No 392
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.03 E-value=0.00085 Score=69.12 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+||||||+|.+|++||..+++.|.+|+|||+.+..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999999999999999987654
No 393
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.02 E-value=0.0022 Score=58.59 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=30.1
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.|||||+|.|||+|+..+-..+-.|+|+|+...+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence 5999999999999999999887779999977544
No 394
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.99 E-value=0.00091 Score=68.95 Aligned_cols=37 Identities=24% Similarity=0.182 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..+||+|||+|.||++||..+++.|.+|+|||+.+..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999997654
No 395
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.97 E-value=0.0057 Score=58.69 Aligned_cols=52 Identities=19% Similarity=0.354 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEc---CCc--EEecceEEEecCCCCc
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILN---DGT--EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~---~g~--~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+++.|++++.+. +..++ .+++ .+. +|+ ++.+|+||-|-|....
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 455566666777788888884 65553 3332 222 343 6899999999998764
No 396
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.96 E-value=0.004 Score=63.14 Aligned_cols=130 Identities=22% Similarity=0.250 Sum_probs=74.6
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-----------------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS----------------------------- 280 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~----------------------------- 280 (436)
|+|+|||+|++|+-.|..|.+.| .+++++++.+ +..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g--------------~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG--------------LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---------------EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 48999999999999999998765 8899988842 110
Q ss_pred --cc-----------cHHHHHHHHHHHHhcCC--EEEecc-eEEEeC-------C--eEEEc-CCc--EEecceEEEecC
Q 013810 281 --SF-----------DDRLRHYATTQLSKSGV--RLVRGI-VKDVDS-------Q--KLILN-DGT--EVPYGLLVWSTG 332 (436)
Q Consensus 281 --~~-----------~~~~~~~~~~~l~~~gV--~i~~~~-v~~i~~-------~--~v~~~-~g~--~i~~D~vi~a~G 332 (436)
.+ ..++.++++.+.+..++ .+..++ |.+++. + .|++. +|+ +..+|.|++|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 01 14577788888777766 355563 666642 1 25554 343 457899999999
Q ss_pred CCCchhcc---cCCCCCCCCCcEEeCCCCCC---CCCCCEEEecccccc
Q 013810 333 VGPSTLVK---SLDLPKSPGGRIGIDEWLRV---PSVQDVFAVGDCSGY 375 (436)
Q Consensus 333 ~~p~~~~~---~~~l~~~~~G~i~vd~~~~~---t~~~~Vya~GD~~~~ 375 (436)
.-..+... --|++. =.|.+.=-..++. -..++|-++|-..+.
T Consensus 148 ~~~~P~~P~~~~~G~e~-F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg 195 (531)
T PF00743_consen 148 HFSKPNIPEPSFPGLEK-FKGEIIHSKDYRDPEPFKGKRVLVVGGGNSG 195 (531)
T ss_dssp SSSCESB-----CTGGG-HCSEEEEGGG--TGGGGTTSEEEEESSSHHH
T ss_pred CcCCCCCChhhhhhhhc-CCeeEEccccCcChhhcCCCEEEEEeCCHhH
Confidence 75432121 123321 1354443222331 135679999976653
No 397
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.94 E-value=0.0018 Score=63.30 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||||.+|+++|..|++.| .+|+|+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G--------------~~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG--------------VPVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecc
Confidence 7999999999999999999876 999999974
No 398
>PLN02976 amine oxidase
Probab=96.93 E-value=0.0012 Score=72.19 Aligned_cols=38 Identities=18% Similarity=0.447 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..++|+|||||++|+++|..|++.|++|+|||+.+.++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 34789999999999999999999999999999987643
No 399
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.91 E-value=0.011 Score=57.93 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCchhcccCCCC
Q 013810 293 QLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (436)
.+++.|++++.++ |.+++. + .|.+.+| ++.+|.||+|+|.....+.+.++++
T Consensus 158 ~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 158 LIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred HHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 3445678887773 666642 2 2444555 6999999999999876666555543
No 400
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.91 E-value=0.0025 Score=65.56 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=61.3
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (436)
..+++|+|||+|++|+.+|..|++.+ .+|+++++.+.+ + .++.+..+.-.+.+.+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMG--------------HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 44569999999999999999998766 789999974322 1 23344445455567788
Q ss_pred CCEEEecc-e-EEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-V-KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v-~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|++++.+. + .++.... ....+|.||+|+|..+.
T Consensus 201 Gv~~~~~~~~~~~~~~~~------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCEEEeCCEECCcCCHHH------HHhhCCEEEEeeCCCCC
Confidence 99998874 3 2221111 11248999999998654
No 401
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.91 E-value=0.0076 Score=60.13 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=32.1
Q ss_pred HHHHHHhcCCEEEecceEEEe--CC----eEEEcCCcEEecceEEEecCCCC
Q 013810 290 ATTQLSKSGVRLVRGIVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 290 ~~~~l~~~gV~i~~~~v~~i~--~~----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+...+.||+++.++|.++. ++ .|.+++|+++.+|++|=|+|++.
T Consensus 160 L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 160 LRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 334455789999999876653 22 47788999999999999999854
No 402
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.90 E-value=0.0098 Score=58.01 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcC-CEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 287 RHYATTQLSKSG-VRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 287 ~~~~~~~l~~~g-V~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+.+ ++++.+. |++++. ++ +.+++|+++.+|+||.|.|....
T Consensus 109 ~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 109 QQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 344455555666 8888874 777753 33 56678888999999999997643
No 403
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.88 E-value=0.0094 Score=59.12 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEcCCcEEecceEEEecCCCC
Q 013810 287 RHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 287 ~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~~g~~i~~D~vi~a~G~~p 335 (436)
.+.+.+.+++.|++++.++ |.++. ++.+ ...+|.++.+|.||.|.|...
T Consensus 111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 111 DAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 3456666677899999884 77764 3333 335677899999999999743
No 404
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.88 E-value=0.0083 Score=60.99 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=34.7
Q ss_pred HHHHHHHhc-CCEEEecceEEEe---CC---eEEEcCCcEEecceEEEecCCCC
Q 013810 289 YATTQLSKS-GVRLVRGIVKDVD---SQ---KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 289 ~~~~~l~~~-gV~i~~~~v~~i~---~~---~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
.+.+.+++. ++.++.+.+.++. ++ +|.+.+|.++.||.||+|+|...
T Consensus 101 ~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 101 AMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 444555555 8899888766652 22 47788898999999999999773
No 405
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.02 Score=56.98 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=77.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCC-CC--------C--------------c--c---
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE-IL--------S--------------S--F--- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~-~l--------~--------------~--~--- 282 (436)
+|+|||+|.+|+-+|..|.+.+ .. +.++++.. +. + . +
T Consensus 10 ~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~ 75 (443)
T COG2072 10 DVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWD 75 (443)
T ss_pred cEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCc
Confidence 7999999999999999999876 33 66666531 10 0 0 1
Q ss_pred -----cHHHHHHHHHHHHhcCCEEEec---ceE--EEeCC----eEEEcCCcE--EecceEEEecCCCCchhcccC-CCC
Q 013810 283 -----DDRLRHYATTQLSKSGVRLVRG---IVK--DVDSQ----KLILNDGTE--VPYGLLVWSTGVGPSTLVKSL-DLP 345 (436)
Q Consensus 283 -----~~~~~~~~~~~l~~~gV~i~~~---~v~--~i~~~----~v~~~~g~~--i~~D~vi~a~G~~p~~~~~~~-~l~ 345 (436)
......++.+.+++.++..... .|. +.+.+ .|.+++|.+ +.+|.||+|+|.--.+.+..+ |++
T Consensus 76 ~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~ 155 (443)
T COG2072 76 EAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLD 155 (443)
T ss_pred ccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCcc
Confidence 1226778888898888776543 233 33332 366667655 559999999998443322222 222
Q ss_pred CCCCCcEEeCCC---CCCCCCCCEEEecccccc
Q 013810 346 KSPGGRIGIDEW---LRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 346 ~~~~G~i~vd~~---~~~t~~~~Vya~GD~~~~ 375 (436)
+-.|.+.=-.+ .+.-..++|-+||--++.
T Consensus 156 -~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 156 -EFKGRILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred -CCCceEEchhcCCCccccCCCeEEEECCCccH
Confidence 11333221111 111356789999976653
No 406
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.86 E-value=0.01 Score=58.10 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhc-CCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~-gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+.+. |++++.+ ++.+++. +. |.+++|+++.+|+||.|.|....
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 334455555555 8999877 4777643 33 56678888999999999998654
No 407
>PRK06753 hypothetical protein; Provisional
Probab=96.84 E-value=0.0081 Score=58.41 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=28.0
Q ss_pred CCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+++.++ +++++. + .|.+++|+++.+|+||-|-|....
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 34567663 777743 2 356678889999999999996543
No 408
>PRK07190 hypothetical protein; Provisional
Probab=96.84 E-value=0.01 Score=59.85 Aligned_cols=50 Identities=14% Similarity=0.306 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+++.|++++.+. +++++. ++ +.+.+|+++.+++||.|.|...
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 33445566777899999984 877753 33 4456778899999999999754
No 409
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.83 E-value=0.011 Score=58.40 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHHHHHHHhc-CCEEEec-ceEEEeC--Ce--EEEcC-C--cEEecceEEEecCCCCc
Q 013810 288 HYATTQLSKS-GVRLVRG-IVKDVDS--QK--LILND-G--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~-gV~i~~~-~v~~i~~--~~--v~~~~-g--~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+. +|+++.+ ++.+++. +. |.+.+ + .++.+|+||.|.|....
T Consensus 125 ~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 125 EALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 3344444443 7888877 4777743 33 45543 2 36999999999997653
No 410
>PRK08013 oxidoreductase; Provisional
Probab=96.78 E-value=0.014 Score=57.34 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=33.9
Q ss_pred HHHHHHHHhc-CCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 288 HYATTQLSKS-GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~-gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+. +|+++.+. +.+++. + .+.+.+|+++.+|+||-|-|....
T Consensus 115 ~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 115 YALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 3344444443 78888774 776643 2 355678889999999999997653
No 411
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.78 E-value=0.00065 Score=58.18 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcce
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMV 98 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~ 98 (436)
..||+|||+|-|||+||+.+++ .+.+|.|||.+-..+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 3589999999999999999974 678899999875533
No 412
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.77 E-value=0.013 Score=49.21 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=26.4
Q ss_pred CCEEE--ecceEEEeC--C--eEEEcCCcEEecceEEEecCC
Q 013810 298 GVRLV--RGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 298 gV~i~--~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 333 (436)
+|++. ..+|.+++. + .+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 54443 345776653 2 477789999999999999996
No 413
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.75 E-value=0.017 Score=56.86 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=32.8
Q ss_pred HHHHHHHHHHh-cCCEEEecc-eEEEeC--Ce--EEE---cCCcEEecceEEEecCCCC
Q 013810 286 LRHYATTQLSK-SGVRLVRGI-VKDVDS--QK--LIL---NDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~-~gV~i~~~~-v~~i~~--~~--v~~---~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+.+ .+++++.++ +++++. ++ +++ .+++++.+|+||-|-|...
T Consensus 109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 33445555544 379999884 777754 33 333 3345799999999999764
No 414
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.74 E-value=0.014 Score=57.43 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCEEEec-ceEEEeC--C--eEEEcCCcEEecceEEEecCCCC
Q 013810 298 GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 298 gV~i~~~-~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+|+++.+ ++++++. + .|.+++|+++.+|+||.|.|...
T Consensus 126 ~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 126 NVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred CeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 6888777 4766642 2 46678898999999999999754
No 415
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.73 E-value=0.013 Score=57.18 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=30.2
Q ss_pred CCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++++.+. +.+++. + .+.+++|+++.+|+||.|.|....
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 67787773 776643 3 467788999999999999998765
No 416
>PLN02785 Protein HOTHEAD
Probab=96.68 E-value=0.0027 Score=65.23 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|++|||||.||+.+|.+|++ +.+|+|||+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35999999999999999999999 689999999864
No 417
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.68 E-value=0.027 Score=55.56 Aligned_cols=90 Identities=24% Similarity=0.281 Sum_probs=58.8
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC-----C--------c---------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-----S--------S--------------- 281 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l-----~--------~--------------- 281 (436)
++|+|||+|++|+-.|..|.+.+ .++++++|.+ +. + .
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g--------------~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~ 72 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREG--------------HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMG 72 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCC--------------CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhc
Confidence 48999999999999999998765 6777777642 10 1 0
Q ss_pred -------------cc--HHHHHHHHHHHHhcCCE--EEecc-eEEEeCC-----eEEEcCC----cEEecceEEEecCCC
Q 013810 282 -------------FD--DRLRHYATTQLSKSGVR--LVRGI-VKDVDSQ-----KLILNDG----TEVPYGLLVWSTGVG 334 (436)
Q Consensus 282 -------------~~--~~~~~~~~~~l~~~gV~--i~~~~-v~~i~~~-----~v~~~~g----~~i~~D~vi~a~G~~ 334 (436)
++ .++.+++....+..++. +..+. +.+++.. .|.+.++ ++.-+|.|++|+|.-
T Consensus 73 ~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 73 YSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred CCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 01 14556677777766653 33332 4444321 3555443 367899999999987
No 418
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.66 E-value=0.025 Score=55.17 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=36.4
Q ss_pred HHHHHHHHHHh-cCCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCC
Q 013810 286 LRHYATTQLSK-SGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~-~gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+.+ .|++++.+ ++++++. ++ +.+++|+++.+|+||.|.|...
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 44555556666 48999987 4877743 33 5667888899999999999764
No 419
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.63 E-value=0.018 Score=56.47 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=27.4
Q ss_pred CCEEEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 364 QDVFAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
+++..+||+++...+ +| .-+..|+..|+.||+.|..
T Consensus 270 ~~~llvGDAAg~v~P~tG-----eGI~~A~~sg~~aa~~i~~ 306 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSG-----EGIYFAAKSGRMCAEAIVE 306 (398)
T ss_pred CCEEEEEcCCCCCCcccc-----cchHHHHHHHHHHHHHHHH
Confidence 679999999997553 33 2356788999999988864
No 420
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.61 E-value=0.0076 Score=58.27 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=46.4
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc--------ccHH------HHHHHHHHH
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--------FDDR------LRHYATTQL 294 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~--------~~~~------~~~~~~~~l 294 (436)
-.++++|||||.+|++.|.+|+..| .+|+|++..+.+.. |+.. +.-.+.+.-
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G--------------~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~ 188 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMG--------------FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVS 188 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcC--------------CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhc
Confidence 3468999999999999999999877 99999999653321 1111 112223333
Q ss_pred HhcCCEEEecc-eEEEe
Q 013810 295 SKSGVRLVRGI-VKDVD 310 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~ 310 (436)
...+|++++.. |++++
T Consensus 189 ~hp~i~l~TyaeV~ev~ 205 (622)
T COG1148 189 NHPNIELITYAEVEEVS 205 (622)
T ss_pred cCCceeeeeeeeeeeec
Confidence 44578888774 77654
No 421
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.61 E-value=0.023 Score=55.34 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.|+|||||.+|+-+|..|++.+ .+|+|+++.
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g--------------~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHG--------------KKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecc
Confidence 5999999999999999999765 789999984
No 422
>PRK06185 hypothetical protein; Provisional
Probab=96.59 E-value=0.026 Score=55.54 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=33.0
Q ss_pred HHHHHHHHHHh-cCCEEEec-ceEEEe--CCe---EEE--cCCc-EEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSK-SGVRLVRG-IVKDVD--SQK---LIL--NDGT-EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~-~gV~i~~~-~v~~i~--~~~---v~~--~~g~-~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+.+ .||+++.+ ++.++. ++. |.+ .+|+ ++.+|+||.|.|....
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH
Confidence 33444455544 38999887 477664 233 333 3564 7999999999998653
No 423
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.58 E-value=0.024 Score=55.45 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=30.9
Q ss_pred HHHHHHHHhc-CCEEEec-ceEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 288 HYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~-gV~i~~~-~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+. ++. +.+ +|.+++. + .|++++|+++.+|+||.|.|....
T Consensus 115 ~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 115 RALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 3344444444 455 444 4666642 3 355678888999999999998653
No 424
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.57 E-value=0.0036 Score=61.94 Aligned_cols=87 Identities=23% Similarity=0.347 Sum_probs=64.1
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcCCE
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSGVR 300 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~gV~ 300 (436)
++|+|||+|+.|+.+|..|++.+ .+|+++++.+.. | .++.++.+...+.|++.||+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G--------------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~ 189 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAG--------------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVE 189 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCC--------------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeE
Confidence 59999999999999999999876 999999885321 1 24567778888899999999
Q ss_pred EEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 301 LVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 301 i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+.+. +- . .+.+++ ..-++|.|++++|..-.
T Consensus 190 ~~~~~~vG-~---~it~~~-L~~e~Dav~l~~G~~~~ 221 (457)
T COG0493 190 FKLNVRVG-R---DITLEE-LLKEYDAVFLATGAGKP 221 (457)
T ss_pred EEEcceEC-C---cCCHHH-HHHhhCEEEEeccccCC
Confidence 99884 32 1 111111 12345999999996543
No 425
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.55 E-value=0.0031 Score=57.99 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...+|+|||+|.|||-||.+|+..|.+|+|+|.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 35799999999999999999999999999999764
No 426
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.54 E-value=0.0083 Score=56.88 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=31.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|.|||.|+.||..|.-|++.|++|+.+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4799999999999999999999999999997643
No 427
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.0082 Score=63.47 Aligned_cols=89 Identities=20% Similarity=0.322 Sum_probs=64.8
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-C---C----C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---L----S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~---l----~--~~~~~~~~~~~~~l~~~ 297 (436)
+.+++|+|||+|+.|+-+|..|.+.| ..|++.+|.+ + + | .++..+.+.-.+.|.+.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~g--------------h~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~e 1848 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAG--------------HTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQE 1848 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcC--------------cEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhh
Confidence 45689999999999999999998876 8999999953 2 1 2 24555566666788999
Q ss_pred CCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCC
Q 013810 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
||+|++++ |..- ..-|+-.-+.|.|++|+|..-
T Consensus 1849 gi~f~tn~eigk~-----vs~d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1849 GIRFVTNTEIGKH-----VSLDELKKENDAIVLATGSTT 1882 (2142)
T ss_pred CceEEeecccccc-----ccHHHHhhccCeEEEEeCCCC
Confidence 99999884 3211 112333456799999999754
No 428
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.51 E-value=0.018 Score=56.40 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=27.1
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.+++.+||+++...+.. ..-+..|+..|..||+.|...
T Consensus 264 ~~v~lvGDAAg~v~P~t----G~GI~~A~~sg~~aa~~i~~~ 301 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPAS----GEGIYFAMKSGQMAAQAIAEY 301 (388)
T ss_pred CCEEEEeccccCcCCcc----cccHHHHHHHHHHHHHHHHHH
Confidence 56999999999755311 223567888898888888653
No 429
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.50 E-value=0.025 Score=55.08 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=31.1
Q ss_pred HHHHHHHHHhc-CCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 287 RHYATTQLSKS-GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 287 ~~~~~~~l~~~-gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+. +++++.+. +.++.. + .+.+.++ ++.+|+||-|-|....
T Consensus 107 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 107 KKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 34444444444 37777663 666532 2 3556565 8999999999997654
No 430
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.50 E-value=0.0036 Score=63.58 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=63.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
...+-+|||||-=||.||..|...|.+++++.-.+...-. +.+. .-..++.......++.++.+..
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMer---------QLD~-----~ag~lL~~~le~~Gi~~~l~~~ 209 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMER---------QLDR-----TAGRLLRRKLEDLGIKVLLEKN 209 (793)
T ss_pred ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHH---------hhhh-----HHHHHHHHHHHhhcceeecccc
Confidence 3456899999999999999999999999999765542111 1111 0111111223345777766533
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+.--.....+......+|+ .+.+|-+|.|+|.+|+.
T Consensus 210 t~ei~g~~~~~~vr~~DG~--------~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 210 TEEIVGEDKVEGVRFADGT--------EIPADLVVMAVGIRPND 245 (793)
T ss_pred hhhhhcCcceeeEeecCCC--------cccceeEEEeccccccc
Confidence 2211112223322334777 89999999999999875
No 431
>PRK06996 hypothetical protein; Provisional
Probab=96.47 E-value=0.032 Score=54.85 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeE--EEcCC---cEEecceEEEecCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL--ILNDG---TEVPYGLLVWSTGV 333 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v--~~~~g---~~i~~D~vi~a~G~ 333 (436)
..+.+.+.+.+.+.+++++.+. +.+++. +++ .+.++ +++.+|+||-|-|.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 3456667777788899998884 777643 344 44543 57999999999995
No 432
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.45 E-value=0.035 Score=55.37 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=27.8
Q ss_pred CCCEEEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 363 VQDVFAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 363 ~~~Vya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.++++.+||+++..++ +| .-+..|+..|++||+.|...
T Consensus 308 ~~~vlLvGDAAg~v~P~tG-----eGI~~Am~sg~~AAe~i~~~ 346 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSG-----EGIYFAAKSGRMCAEAIVEG 346 (450)
T ss_pred CCCcEEEeccccCCCcccc-----ccHHHHHHHHHHHHHHHHHH
Confidence 3578899999987553 33 23567889999999888753
No 433
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.45 E-value=0.0027 Score=64.86 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHhcccCC-CeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~ 96 (436)
|+||||||.||+.+|.+|++.+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6899999999999999999987 79999999864
No 434
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.45 E-value=0.026 Score=57.82 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhc-CCEEEecc-eEEEeC--Ce--EEEc--CC--cEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKS-GVRLVRGI-VKDVDS--QK--LILN--DG--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~-gV~i~~~~-v~~i~~--~~--v~~~--~g--~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+.+. |++++.+. +++++. ++ +.++ +| +++.+|+||-|.|....
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 344455555554 89999884 887753 33 3444 56 46999999999997653
No 435
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.44 E-value=0.013 Score=64.19 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=61.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
.++|+|||+|+.|+.+|..|++.|. .|+|+|..+.. .. . +. . ..+..++.++.+ .
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----~~-~-------------l~---~-~L~~~GV~i~~~~~ 373 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----SP-E-------------AR---A-EARELGIEVLTGHV 373 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----hH-H-------------HH---H-HHHHcCCEEEcCCe
Confidence 4789999999999999999999995 58999876431 00 0 01 1 123457777765 5
Q ss_pred eEeEeCCCC--EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 140 CAGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 140 v~~id~~~~--~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+..+..+.+ .+.+... ++. ..++.+|.|+++.|..|+.
T Consensus 374 v~~i~g~~~v~~V~l~~~-~g~------~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 374 VAATEGGKRVSGVAVARN-GGA------GQRLEADALAVSGGWTPVV 413 (985)
T ss_pred EEEEecCCcEEEEEEEec-CCc------eEEEECCEEEEcCCcCchh
Confidence 666765443 2333311 121 1278999999999988754
No 436
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0039 Score=63.55 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=33.3
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|+||||+|.||...|..|++.|.+|+|+|...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 346899999999999999999999999999999885
No 437
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.38 E-value=0.036 Score=55.58 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=29.7
Q ss_pred HHHHHhcCCEEEecc-eEEEeCCe---EEEcCCcEEecceEEEecCCCCc
Q 013810 291 TTQLSKSGVRLVRGI-VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 291 ~~~l~~~gV~i~~~~-v~~i~~~~---v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+++.|++++.++ |.+++.+. |.+.+| ++.+|.||+|+|....
T Consensus 190 ~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 190 RRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEccccccc
Confidence 334456677777774 66665432 455555 6899999999995533
No 438
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.38 E-value=0.035 Score=55.26 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcC---CEEEecc-eEEEe---------CC--eEEEcCCcEEecceEEEecCCCCc
Q 013810 287 RHYATTQLSKSG---VRLVRGI-VKDVD---------SQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 287 ~~~~~~~l~~~g---V~i~~~~-v~~i~---------~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+.+ |+++.+. +.+++ ++ .|.+.+|+++.+|+||-|-|....
T Consensus 120 ~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 120 QNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 344455555554 8888884 77774 12 466788999999999999998654
No 439
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.37 E-value=0.0064 Score=56.32 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=63.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
..+|++|||||+-++..|--++-.|.++.|+=|.+.. +.+. ...+.+.........+++++.. .
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv---------LR~F------D~~i~~~v~~~~~~~ginvh~~s~ 252 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV---------LRGF------DEMISDLVTEHLEGRGINVHKNSS 252 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh---------hcch------hHHHHHHHHHHhhhcceeeccccc
Confidence 4589999999999999999999999999888776542 1111 1112222222234456777654 4
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
++.+........+.-...+. ....|.|+.|+|-.|+...
T Consensus 253 ~~~v~K~~~g~~~~i~~~~~--------i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 253 VTKVIKTDDGLELVITSHGT--------IEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred ceeeeecCCCceEEEEeccc--------cccccEEEEEecCCCCccc
Confidence 44444332221111122443 4459999999998876643
No 440
>PRK10015 oxidoreductase; Provisional
Probab=96.35 E-value=0.034 Score=55.20 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCEEEec-ceEEEe--CCeEE--EcCCcEEecceEEEecCCC
Q 013810 286 LRHYATTQLSKSGVRLVRG-IVKDVD--SQKLI--LNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~-~v~~i~--~~~v~--~~~g~~i~~D~vi~a~G~~ 334 (436)
+.+.+.+.+++.|++++.+ +|+++. ++.+. ..++.++.+|.||.|.|..
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 3345666677789999988 477764 23432 2345679999999999964
No 441
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.35 E-value=0.0042 Score=48.15 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=30.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|+|||||..|..-+..|.+.|.+|+||.++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3578999999999999999999999999999886
No 442
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.33 E-value=0.041 Score=53.92 Aligned_cols=47 Identities=30% Similarity=0.352 Sum_probs=32.2
Q ss_pred HHHHHHh-cCCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 290 ATTQLSK-SGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 290 ~~~~l~~-~gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+ .|++++.+ ++.++.. ++ |.+++|.++.+|.||.|.|....
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 3334434 47888877 4777643 32 55678888999999999997653
No 443
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.32 E-value=0.042 Score=53.88 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEeC---C--eEEE-cCCc--EEecceEEEecCCCCc
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVDS---Q--KLIL-NDGT--EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~~---~--~v~~-~~g~--~i~~D~vi~a~G~~p~ 336 (436)
+.+.+...+.|++++.+. +++++. + .|.+ .+|+ ++.+|+||-|-|....
T Consensus 107 ~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 107 RDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 344444566789999884 666643 2 3555 4664 6899999999997653
No 444
>PRK09897 hypothetical protein; Provisional
Probab=96.28 E-value=0.049 Score=55.24 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=26.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||+|++|+-+|..|.+.. ...+|+|+++.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~~------------~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQQ------------TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhcC------------CCCcEEEEecC
Confidence 7999999999999999997632 23577777773
No 445
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.27 E-value=0.04 Score=56.63 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhc-CCEEEecc-eEEEeC--CeEE--E--cCCc-EEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKS-GVRLVRGI-VKDVDS--QKLI--L--NDGT-EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~-gV~i~~~~-v~~i~~--~~v~--~--~~g~-~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+.+. +++++.++ +++++. +.+. + .+|+ ++.+|+||.|.|....
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 334455555554 79999884 777753 3332 3 3454 6999999999997654
No 446
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.21 E-value=0.0026 Score=63.20 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=28.4
Q ss_pred EECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 67 IIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
|||+|.||++||..+++.|.+|+||||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999764
No 447
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0031 Score=58.09 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=63.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe----
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS---- 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 138 (436)
-+-+|||||+.+|.||-.|+-.|++|++.=|+- .+.|. ..+..++....+...++.|...
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI----------~LrGF------Dqdmae~v~~~m~~~Gikf~~~~vp~ 262 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI----------LLRGF------DQDMAELVAEHMEERGIKFLRKTVPE 262 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEe----------ecccc------cHHHHHHHHHHHHHhCCceeecccce
Confidence 478999999999999999999999998876641 11111 1223333344456678887665
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+|..++...-.|.......++ +-+-.||.+++|.|-.+...
T Consensus 263 ~Veq~~~g~l~v~~k~t~t~~------~~~~~ydTVl~AiGR~~~~~ 303 (503)
T KOG4716|consen 263 RVEQIDDGKLRVFYKNTNTGE------EGEEEYDTVLWAIGRKALTD 303 (503)
T ss_pred eeeeccCCcEEEEeecccccc------cccchhhhhhhhhccccchh
Confidence 455555433233333222222 11557999999999876543
No 448
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.13 E-value=0.0031 Score=57.64 Aligned_cols=99 Identities=23% Similarity=0.446 Sum_probs=61.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--C-CCcc---cHHHHHHHH-----HHHHhcCCE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--I-LSSF---DDRLRHYAT-----TQLSKSGVR 300 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~-l~~~---~~~~~~~~~-----~~l~~~gV~ 300 (436)
+|+|||||.-|+-+|..+.+.. +.-+|-+++..+ . -|.+ +..+...-. ..+--.|.+
T Consensus 41 kvLVvGGGsgGi~~A~k~~rkl------------~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~ 108 (446)
T KOG3851|consen 41 KVLVVGGGSGGIGMAAKFYRKL------------GSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGAT 108 (446)
T ss_pred EEEEEcCCcchhHHHHHHHhhc------------CCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcH
Confidence 7999999999999999887643 236788888742 1 1211 111111000 001111222
Q ss_pred EEecceEEEeC--CeEEEcCCcEEecceEEEecCCCCc-hhcccC
Q 013810 301 LVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSL 342 (436)
Q Consensus 301 i~~~~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~ 342 (436)
.+..+|.++++ +.|.+.+|++|.+|.+|+|.|..-+ .-++.+
T Consensus 109 wi~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl 153 (446)
T KOG3851|consen 109 WIKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGL 153 (446)
T ss_pred HHHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcCh
Confidence 22234666654 6799999999999999999998876 334333
No 449
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.12 E-value=0.037 Score=54.37 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p 335 (436)
++.+.+.+.+++.|++++.+. +.+++. +. +.+ +++++.+|.||+|+|...
T Consensus 106 ~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 106 DVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 344455556667788888884 777643 22 333 566799999999999743
No 450
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.11 E-value=0.039 Score=54.50 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=26.4
Q ss_pred CEEEec-ceEEEeC--C--eEEEcCCcEEecceEEEecCCCC
Q 013810 299 VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 299 V~i~~~-~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.++.+ +|++++. + .+.+++|+++.+|+||.|.|...
T Consensus 118 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 118 GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 345555 3666643 3 36668888999999999999764
No 451
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.07 E-value=0.011 Score=56.03 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=62.7
Q ss_pred CCCcEEEECCchHHHHHHHhccc----CCCeEE-EEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVV-CVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF 135 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~----~g~~v~-lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (436)
.++.|-|||+|+-|-..|..|++ .|.+|. ||+.+.. ...++. +.+.+..-.-.+..++.+
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n------m~kiLP---------eyls~wt~ekir~~GV~V 410 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN------MEKILP---------EYLSQWTIEKIRKGGVDV 410 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC------hhhhhH---------HHHHHHHHHHHHhcCcee
Confidence 34789999999999998888876 455654 4544321 111111 111111111123457777
Q ss_pred EEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 136 FLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 136 ~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.. .|.++......+.++ +.+|. ++..|.+|+|+|..|+..
T Consensus 411 ~pna~v~sv~~~~~nl~lk-L~dG~--------~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 411 RPNAKVESVRKCCKNLVLK-LSDGS--------ELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred ccchhhhhhhhhccceEEE-ecCCC--------eeeeeeEEEEecCCCchh
Confidence 665 666666555555443 45887 899999999999998764
No 452
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.00 E-value=0.0099 Score=54.92 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhccc----CCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~~~~ 97 (436)
.+.+|||||||-.|.+.|..|++ .|++|+|+|+++.+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 45799999999999999999964 57999999998754
No 453
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=95.99 E-value=0.069 Score=52.41 Aligned_cols=90 Identities=21% Similarity=0.369 Sum_probs=59.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-----C--------------cc----------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----S--------------SF---------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-----~--------------~~---------- 282 (436)
.|+|||+|++|.-+|..|++.| .+|.++++.... . ..
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G--------------~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAG--------------LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcC--------------CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 6999999999999999999865 677777663110 0 00
Q ss_pred -----------------------cHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeE---EEcCCcEEecceEEEecCC
Q 013810 283 -----------------------DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL---ILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 283 -----------------------~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v---~~~~g~~i~~D~vi~a~G~ 333 (436)
-..+.+++.+..++.|++++.++ +..+. ++++ +..++.++.++.||.|.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 01233445556667788888874 55553 2222 2233368999999999996
Q ss_pred CC
Q 013810 334 GP 335 (436)
Q Consensus 334 ~p 335 (436)
..
T Consensus 151 ~s 152 (396)
T COG0644 151 NS 152 (396)
T ss_pred ch
Confidence 54
No 454
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=95.98 E-value=0.046 Score=53.18 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=30.0
Q ss_pred CCCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~ 95 (436)
.++|||+||||..|.+.+..|++ ...+|.|+||-+
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~ 38 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLD 38 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 35899999999999999999987 456899999653
No 455
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.97 E-value=0.071 Score=52.23 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEe-----CCeEEEc-CCc--EEecceEEEecCCCCc
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVD-----SQKLILN-DGT--EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~-----~~~v~~~-~g~--~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+.|+.++.+. ++.+. ...|.+. +|+ ++.+|+||-|-|....
T Consensus 107 ~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 107 RDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 344455556677777763 44442 2357775 775 6899999999997653
No 456
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.96 E-value=0.0094 Score=52.51 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|||||..|...+..|.+.|.+|+||+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4789999999999999999999999999999863
No 457
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.88 E-value=0.0066 Score=58.18 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
..+|++|||+|.-||.||.+|++.|.+|+++|+....+.
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 458999999999999999999999999999998854433
No 458
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=95.86 E-value=0.009 Score=59.23 Aligned_cols=98 Identities=31% Similarity=0.425 Sum_probs=25.6
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc---------ccH-------------------
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS---------FDD------------------- 284 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~---------~~~------------------- 284 (436)
|+|||||+.|+-.|..+++.| .+|.|+++...+.. +..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G--------------~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~ 67 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAG--------------AKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRL 67 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTT--------------S-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST
T ss_pred EEEECccHHHHHHHHHHHHCC--------------CEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHH
Confidence 899999999999999999877 89999998643310 000
Q ss_pred -----------------------HHHHHHHHHHHhcCCEEEecc-eEEEeC-----CeEEEcC---CcEEecceEEEecC
Q 013810 285 -----------------------RLRHYATTQLSKSGVRLVRGI-VKDVDS-----QKLILND---GTEVPYGLLVWSTG 332 (436)
Q Consensus 285 -----------------------~~~~~~~~~l~~~gV~i~~~~-v~~i~~-----~~v~~~~---g~~i~~D~vi~a~G 332 (436)
.+...+.+.+++.||+++.++ +.++.. .+|++.+ ..++.++.+|-|+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 68 RARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 001123344556678888774 555532 2355543 35799999999999
Q ss_pred CCCchhcccCCCCC
Q 013810 333 VGPSTLVKSLDLPK 346 (436)
Q Consensus 333 ~~p~~~~~~~~l~~ 346 (436)
.- .+....|++.
T Consensus 148 ~g--~l~~~aG~~~ 159 (428)
T PF12831_consen 148 DG--DLAALAGAPY 159 (428)
T ss_dssp --------------
T ss_pred cc--cccccccccc
Confidence 42 3444444443
No 459
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.84 E-value=0.007 Score=55.66 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...|-|||||.||-.||++++++|..|.|+|-.+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 3569999999999999999999999999999654
No 460
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.82 E-value=0.013 Score=49.27 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|+|||||..|..-|..|.+.|++|+||+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4588999999999999999999999999999754
No 461
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=95.80 E-value=0.0075 Score=55.13 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~ 97 (436)
..+|+||||||..|++.|++|.- .+.+|.|+|++..+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 46999999999999999999854 58999999998764
No 462
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.80 E-value=0.01 Score=50.01 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+|+|||||..|.++|..|++.|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999874
No 463
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=95.76 E-value=0.15 Score=44.71 Aligned_cols=91 Identities=20% Similarity=0.327 Sum_probs=53.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------cc-----c---------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------SF-----D--------------- 283 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~--------~~-----~--------------- 283 (436)
.|+|||+|++|+-+|..|++.+ .+|.+++++.... .| .
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g--------------~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAG--------------LKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHT--------------S-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E
T ss_pred CEEEECCChhHHHHHHHHHHCC--------------CeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE
Confidence 7999999999999999999876 9999999852110 01 0
Q ss_pred -----------HHHHHHHHHHHHhcCCEEEecc-eEEE--eC-Ce---EEEc-----------CCcEEecceEEEecCCC
Q 013810 284 -----------DRLRHYATTQLSKSGVRLVRGI-VKDV--DS-QK---LILN-----------DGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 284 -----------~~~~~~~~~~l~~~gV~i~~~~-v~~i--~~-~~---v~~~-----------~g~~i~~D~vi~a~G~~ 334 (436)
.++...+....-+.|++++... +.++ .+ ++ |.++ |--.+++..||-|||..
T Consensus 85 ~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 85 EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 1111222223334788888774 5554 22 22 3332 22378999999999998
Q ss_pred Cc
Q 013810 335 PS 336 (436)
Q Consensus 335 p~ 336 (436)
..
T Consensus 165 a~ 166 (230)
T PF01946_consen 165 AE 166 (230)
T ss_dssp SS
T ss_pred hH
Confidence 76
No 464
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.66 E-value=0.075 Score=48.21 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=27.9
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.++|+|+|||.+|+-.|.+|++.. ...+....||+++..
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~--------sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHP--------SFKKGELDITIFESK 48 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCC--------ccCCCceeEEEEeec
Confidence 369999999999999999998743 112233566666654
No 465
>PRK11445 putative oxidoreductase; Provisional
Probab=95.63 E-value=0.18 Score=48.67 Aligned_cols=38 Identities=8% Similarity=0.269 Sum_probs=26.7
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
++|+.+||+++...+.. ..-+..|+.+|..+|+.|...
T Consensus 264 ~~vvlVGDAAg~i~P~t----G~Gi~~al~sa~~la~~l~~~ 301 (351)
T PRK11445 264 DNAFLIGEAAGFISPSS----LEGISYALDSARILSEVLNKQ 301 (351)
T ss_pred CCEEEEEcccCccCCcc----CccHHHHHHhHHHHHHHHHhc
Confidence 56899999998654311 234567888888888888644
No 466
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.62 E-value=0.0042 Score=60.74 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=34.4
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
....||+|||||..|-.||+..+-+|+++.|+|+++.-
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence 34589999999999999999999999999999988653
No 467
>PRK07538 hypothetical protein; Provisional
Probab=95.60 E-value=0.11 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.8
Q ss_pred cEEEECCChHHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFI 253 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~ 253 (436)
+|+|||||+.|+-+|..|++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G 23 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRG 23 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCC
Confidence 6999999999999999998744
No 468
>PLN02985 squalene monooxygenase
Probab=95.58 E-value=0.14 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.4
Q ss_pred CcEEEECCChHHHHHHHHHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFI 253 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~ 253 (436)
.+|+|||+|..|+-+|..|++.|
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G 66 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDG 66 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcC
Confidence 47999999999999999998744
No 469
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.53 E-value=0.025 Score=55.81 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=28.4
Q ss_pred cCCEEEecceEEEe--C----CeEEEcCCcEEecceEEEecCC
Q 013810 297 SGVRLVRGIVKDVD--S----QKLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 297 ~gV~i~~~~v~~i~--~----~~v~~~~g~~i~~D~vi~a~G~ 333 (436)
.++.++.+.|.++. + .+|++.+|.++.|+.||+++|.
T Consensus 114 ~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 114 PNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 37777777655442 1 4688899999999999999995
No 470
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.50 E-value=0.013 Score=58.67 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=31.4
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+|+|||.|++|+++|..|.+.|++|+++|+++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5999999999999999999999999999987654
No 471
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.46 E-value=0.013 Score=50.69 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=27.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|.|||.|+.||..|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998765
No 472
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.40 E-value=0.021 Score=50.25 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|+|||||-.|...|..|.+.|.+|+||+++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3579999999999999999999999999999875
No 473
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.015 Score=52.05 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++++|||+|..|.+.|..|.+.|++|++||+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999998743
No 474
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.38 E-value=0.051 Score=54.82 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=27.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCe-EEEEcC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSP 93 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~ 93 (436)
..-+|||||||-+|.++|.+|++.|.+ .++.|+
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~ 71 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLER 71 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEee
Confidence 346899999999999999999999998 444444
No 475
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=0.16 Score=49.66 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=19.5
Q ss_pred cEEEECCChHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDF 252 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~ 252 (436)
+|+|||+|++|+.+|..|.+.
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~ 23 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKS 23 (474)
T ss_pred eEEEECCchHHHHHHHHHHhC
Confidence 799999999999999999864
No 476
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.053 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.9
Q ss_pred cEEEECCChHHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFI 253 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~ 253 (436)
.|+|||||..|+|.|.+.++.|
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~G 51 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLG 51 (679)
T ss_pred cEEEECCCccchHHHHHHHhcC
Confidence 7999999999999999999887
No 477
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.25 E-value=0.059 Score=44.86 Aligned_cols=77 Identities=16% Similarity=0.303 Sum_probs=50.5
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS 311 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~ 311 (436)
|+|+|+|.+|.-+|..|++.+ .+|+++.|.. ..+.+++.|+.+.... -..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--------------~~V~l~~r~~------------~~~~~~~~g~~~~~~~~~~~~~~ 54 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--------------HDVTLVSRSP------------RLEAIKEQGLTITGPDGDETVQP 54 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--------------CEEEEEESHH------------HHHHHHHHCEEEEETTEEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCC--------------CceEEEEccc------------cHHhhhheeEEEEecccceeccc
Confidence 689999999999999998755 8999998841 1223677888887664 111111
Q ss_pred CeEEEcCC--cEEecceEEEecCCCCc
Q 013810 312 QKLILNDG--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 312 ~~v~~~~g--~~i~~D~vi~a~G~~p~ 336 (436)
.....+. ..-++|.||+|+-....
T Consensus 55 -~~~~~~~~~~~~~~D~viv~vKa~~~ 80 (151)
T PF02558_consen 55 -PIVISAPSADAGPYDLVIVAVKAYQL 80 (151)
T ss_dssp -EEEESSHGHHHSTESEEEE-SSGGGH
T ss_pred -ccccCcchhccCCCcEEEEEecccch
Confidence 1112221 34568999999865544
No 478
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.24 E-value=0.074 Score=53.18 Aligned_cols=76 Identities=29% Similarity=0.349 Sum_probs=53.9
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~ 310 (436)
++++|+|+|.+|..+|..|++.| .+|+++++... +.+ +...+.+.+.|++++.+....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G--------------~~V~~~d~~~~-----~~~-~~~~~~l~~~~~~~~~~~~~~-- 63 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG--------------AKVILTDEKEE-----DQL-KEALEELGELGIELVLGEYPE-- 63 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCch-----HHH-HHHHHHHHhcCCEEEeCCcch--
Confidence 58999999999999999999876 99999987531 122 222344666788877654321
Q ss_pred CCeEEEcCCcEEecceEEEecCCCCc
Q 013810 311 SQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
...-.+|+||.++|..++
T Consensus 64 --------~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 64 --------EFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred --------hHhhcCCEEEECCCCCCC
Confidence 011247999999998776
No 479
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.17 E-value=0.035 Score=48.91 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=48.8
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~ 310 (436)
++|+|||||.+|..-+..|.+.+ .+|+++.+. +.+++. +..+..+|+++.+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g--------------a~VtVvsp~-----~~~~l~----~l~~~~~i~~~~~~~~--- 63 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG--------------AQLRVIAEE-----LESELT----LLAEQGGITWLARCFD--- 63 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC--------------CEEEEEcCC-----CCHHHH----HHHHcCCEEEEeCCCC---
Confidence 58999999999999999998766 899999753 123332 2333345665544211
Q ss_pred CCeEEEcCCcEEecceEEEecCCC-Cc
Q 013810 311 SQKLILNDGTEVPYGLLVWSTGVG-PS 336 (436)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~-p~ 336 (436)
.+.--.+|+||.|||.. .|
T Consensus 64 -------~~dl~~~~lVi~at~d~~ln 83 (205)
T TIGR01470 64 -------ADILEGAFLVIAATDDEELN 83 (205)
T ss_pred -------HHHhCCcEEEEECCCCHHHH
Confidence 01112489999999986 45
No 480
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.17 E-value=0.023 Score=49.01 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.8
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+|.|||+|..|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999754
No 481
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.068 Score=49.72 Aligned_cols=99 Identities=18% Similarity=0.248 Sum_probs=67.2
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHH--HhhhcCCCCccEEE---EEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEec
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDV--RQRYSHVKDYIHVT---LIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRG 304 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~--~~~~~~~~~~~~V~---lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~ 304 (436)
-.|+|||||+.|...|.+.++.|-+.- .+++.. +|. =++. -......++.+...+++..++..|.+...
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGG-----QvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~ 286 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG-----QVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNL 286 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCC-----eeccccchhheeccccccchHHHHHHHHHHhhcCchhhhh
Confidence 479999999999999999888663211 122221 111 0111 01122356888999999999999998765
Q ss_pred -ceEEEeC-------CeEEEcCCcEEecceEEEecCCC
Q 013810 305 -IVKDVDS-------QKLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 305 -~v~~i~~-------~~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
+.+.+++ ..|++++|-.+.+..+|+++|.+
T Consensus 287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 2333332 25888999999999999999975
No 482
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.15 E-value=0.074 Score=56.83 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
+|+|||+|+.|+-+|..|++.+ ++.+|+|+++.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecCC
Confidence 7999999999999999998752 237888888753
No 483
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.13 E-value=0.026 Score=56.47 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|+|||+|.+|+++|..|++.|++|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34789999999999999999999999999999874
No 484
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.06 E-value=0.04 Score=38.99 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.7
Q ss_pred EECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC
Q 013810 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (436)
Q Consensus 235 ViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~ 278 (436)
|||+|.+|+-+|..|++.+ .+|+++++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g--------------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--------------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--------------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCC--------------CcEEEEecCcc
Confidence 7999999999999999765 89999999653
No 485
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.00 E-value=0.035 Score=52.81 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCCcEEEECCchHHHHHHHhccc----CCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~ 94 (436)
.++|||||||||+|++.|..|.. +..+|.|+|-.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 36899999999999999999875 35679999866
No 486
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.89 E-value=0.12 Score=49.44 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=31.0
Q ss_pred CCcEEEEe-EeEeEeCCCCE-EEEE--EecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 131 PGSYFFLS-HCAGIDTDNHV-VHCE--TVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 131 ~~~~~~~~-~v~~id~~~~~-v~~~--~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..+..+.. +|..+...... +.+. ....++ .+++.+|.||+|||-+...|.
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~------~~t~~~D~vIlATGY~~~~P~ 344 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGE------LETVETDAVILATGYRRAVPS 344 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCC------ceEEEeeEEEEecccccCCch
Confidence 34444443 77888766533 4433 222332 237889999999999866663
No 487
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.85 E-value=0.057 Score=47.46 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=45.9
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~ 310 (436)
++|+|||||.+|...+..|.+.+ .+|+++.+. +.+++. +......+.+....
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g--------------a~V~VIs~~-----~~~~l~----~l~~~~~i~~~~~~----- 62 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG--------------AHIVVISPE-----LTENLV----KLVEEGKIRWKQKE----- 62 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEcCC-----CCHHHH----HHHhCCCEEEEecC-----
Confidence 58999999999999999998765 899999752 223332 23333334442211
Q ss_pred CCeEEEcCCcEEecceEEEecCCCC
Q 013810 311 SQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+....--.+|+||.||+...
T Consensus 63 -----~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 63 -----FEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred -----CChhhcCCceEEEEcCCCHH
Confidence 11111235899999998755
No 488
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=94.80 E-value=0.3 Score=45.52 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEe----C---CeEEEcCCcEEecceEEEecCCCCchhcc
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVD----S---QKLILNDGTEVPYGLLVWSTGVGPSTLVK 340 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~----~---~~v~~~~g~~i~~D~vi~a~G~~p~~~~~ 340 (436)
+.++..+++.|+.++.++ ++.++ + ..|.+++|....++.+|+++|..-+.++.
T Consensus 157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcC
Confidence 445556778899999884 55443 2 35778899999999999999988776554
No 489
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=94.76 E-value=0.15 Score=48.71 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=25.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 275 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~ 275 (436)
+|+|||||..|+-.|..|.+.| .+|.+++.
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G--------------~~v~VlE~ 33 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKG--------------IDVVVLES 33 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcC--------------CeEEEEee
Confidence 7999999999999999999865 66666665
No 490
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.62 E-value=0.04 Score=46.91 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=29.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+|+|+|+|.+|..||..|...|++|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3789999999999999999999999999999763
No 491
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.58 E-value=0.34 Score=49.25 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEE--cCC--cEEecceEEEecC-CCCc
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLIL--NDG--TEVPYGLLVWSTG-VGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~--~~g--~~i~~D~vi~a~G-~~p~ 336 (436)
+.+.+.+.+++.||+++.++ ++++.. + +|.+ .++ .++.+|.||+|+| +..|
T Consensus 192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 192 LVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 34455556667788888874 666642 2 2333 333 3588999999998 6655
No 492
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.55 E-value=0.046 Score=56.71 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 356 ~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.+++ |++||+||+|||+... ...++..+..+|++++.++..+.
T Consensus 389 ~~~~-T~v~glyA~Ge~~~~~-------~~~l~~~s~~~g~~ag~~~~~~~ 431 (608)
T PRK06854 389 YNRM-TTVEGLFAAGDVVGGS-------PHKFSSGSFAEGRIAAKAAVRYI 431 (608)
T ss_pred cccc-cCCCCEEEeeecCCCC-------cchhHHHHHHHHHHHHHHHHHHH
Confidence 8899 8999999999997521 14577788889999998887543
No 493
>PRK04148 hypothetical protein; Provisional
Probab=94.46 E-value=0.034 Score=44.92 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=30.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++++||.| .|.+.|..|++.|++|+.+|-++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 679999999 999999999999999999998765
No 494
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=94.43 E-value=0.057 Score=54.56 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~~ 97 (436)
..+|.+|||||.||+..|..|.+ ...+|.|+|+....
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 46999999999999999999998 56899999998765
No 495
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.39 E-value=0.053 Score=44.31 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCe-EEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~ 94 (436)
.++++|||+|-+|-+++.+|...|.+ |+|+.|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 47999999999999999999999987 9999886
No 496
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.35 E-value=0.045 Score=53.41 Aligned_cols=42 Identities=21% Similarity=0.098 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 355 DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 355 d~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+++|++...||+|++|.+++. .--..|..+|..|+.|+....
T Consensus 322 ~~~l~~k~~~~l~~AGqi~g~----------~Gy~ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 322 DPTLQLKKRPNLFFAGQITGV----------EGYVESAASGLLAGINAARLA 363 (436)
T ss_pred chhccccCCCCEEeeeeecCc----------hHHHHHHHHHHHHHHHHHHHh
Confidence 345775578999999999985 234489999999999997654
No 497
>PRK08275 putative oxidoreductase; Provisional
Probab=94.22 E-value=0.056 Score=55.53 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
.+||||||||.|||+||+.+++. |.+|+||||.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 47999999999999999999976 789999998864
No 498
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.20 E-value=0.055 Score=50.44 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=31.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+|.|||+|.-|...|..++..|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5899999999999999999999999999998754
No 499
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.13 E-value=0.11 Score=46.14 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEE
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~ 308 (436)
++++|+|||||.+|..=+..|.+.+ .+|+++.+ ++...+.+......|+++....
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~g--------------A~VtVVap---------~i~~el~~l~~~~~i~~~~r~~-- 78 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKG--------------CYVYILSK---------KFSKEFLDLKKYGNLKLIKGNY-- 78 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEcC---------CCCHHHHHHHhCCCEEEEeCCC--
Q ss_pred EeCCeEEEcCCcEEecceEEEecC
Q 013810 309 VDSQKLILNDGTEVPYGLLVWSTG 332 (436)
Q Consensus 309 i~~~~v~~~~g~~i~~D~vi~a~G 332 (436)
..+..-.+++||.||+
T Consensus 79 --------~~~dl~g~~LViaATd 94 (223)
T PRK05562 79 --------DKEFIKDKHLIVIATD 94 (223)
T ss_pred --------ChHHhCCCcEEEECCC
No 500
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.03 E-value=0.049 Score=52.63 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=39.9
Q ss_pred cEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 351 RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 351 ~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.+.+|+.+. |+.+++|++||+++. ...+..|...|..+|+.|+..
T Consensus 438 ri~~d~~~~-t~i~gLy~aGdGAG~---------argI~~Aaa~Gi~~A~~i~~k 482 (486)
T COG2509 438 RIKVDEDLS-TSIKGLYPAGDGAGL---------ARGIVSAAADGIKAAEGIARK 482 (486)
T ss_pred eEeecccce-eeecceEEccccccc---------cchhHHHhhhhHHHHHHHHHH
Confidence 478888866 999999999999997 788999999999999998754
Done!