BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013811
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RH9|A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon
Esculentum (Tomato)
Length = 373
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/375 (56%), Positives = 274/375 (73%), Gaps = 5/375 (1%)
Query: 28 AGDGFIRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVART 87
+ + F+ T G+HF LNG + NGFNAYWLMY+A DPS R KV+ F +A+ + + VART
Sbjct: 2 SNNNFVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVART 61
Query: 88 WAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNW 147
WAFS GG RPLQ +PG YNEQMF+GLDFVI+EA+KYGI LI+SL NN+D+FGGKKQYV W
Sbjct: 62 WAFSHGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEW 121
Query: 148 ARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC 207
A +GQ LTSDDDFF NP+VKG+YKN +K VL R NT T + YKDDPTI++WEL+NEPRC
Sbjct: 122 AVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRC 181
Query: 208 TSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDI-GTDFVA 266
SD SG+T Q W+ EMA Y+KSID NHLLE GLEGFYG ++ NPN I GT+F++
Sbjct: 182 PSDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYGNDM---RQYNPNSYIFGTNFIS 238
Query: 267 NNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSR 326
NN + GIDF T+H YP+QWL Q + + W+ HI D++ +L+KP+L+AEFGKS
Sbjct: 239 NNQVQGIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSK-MLKKPLLIAEFGKST 297
Query: 327 KDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPS 386
K PGY+ +RD F +Y I++ AK LFWQ+L +GM +F DGY++VL +SPS
Sbjct: 298 KTPGYTVAKRDNYFEKIYGTIFNCAKSGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPS 357
Query: 387 TANVITQQAHKLYQI 401
T+ VI Q+ +L ++
Sbjct: 358 TSRVILLQSLRLSKL 372
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 187/388 (48%), Gaps = 52/388 (13%)
Query: 36 RGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGY 95
RGSH +LNG + G N Y++ Y ++ + + A G+ V R W F DG
Sbjct: 17 RGSH-MLNGKEFRFIGSNNYYMHYKSN-----RMIDSVLESARDMGIKVLRIWGFLDGES 70
Query: 96 RP------LQRSPGSYN--------EQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGK 141
+ PG + + F+ LD+ IA+A++ GIKLI+ L NN+D FGG
Sbjct: 71 YCRDKNTYMHPEPGVFGVPEGISNAQNGFERLDYTIAKAKELGIKLIIVLVNNWDDFGGM 130
Query: 142 KQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWEL 201
QYV W T DDF+R+ +K YK + ++N N +TG+ Y+++PTIMAWEL
Sbjct: 131 NQYVRWFGG-----THHDDFYRDERIKEEYKKYVSFLINHVNVYTGVPYREEPTIMAWEL 185
Query: 202 MNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYG-----QSTPQRKRVNP 256
NE RC +D SG T+ W+ EM+SY+KS+D NHL+ G EGF+ +
Sbjct: 186 ANELRCETDKSGNTLVEWVKEMSSYIKSLDPNHLVAVGDEGFFSNYEGFKPYGGEAEWAY 245
Query: 257 NLDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKP 316
N G D+ I +DF T H YP W S + Q W++ HI+ A+ I KP
Sbjct: 246 NGWSGVDWKKLLSIETVDFGTFHLYPSHWGVSPENYAQWG--AKWIEDHIKIAKEI-GKP 302
Query: 317 ILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFR-- 374
++L E+G + P + T Y++++ +FW L G + R
Sbjct: 303 VVLEEYGIPKSAP---------VNRTAIYRLWNDLVYDLGGDGAMFWMLAGIGEGSDRDE 353
Query: 375 -------DGYEIVLSQSPSTANVITQQA 395
DG+ IV SP A +I + A
Sbjct: 354 RGYYPDYDGFRIVNDDSPE-AELIREYA 380
>pdb|4AWE|A Chain A, The Crystal Structure Of Chrysonilia Sitophila
Endo-Beta-D- 1,4-Mannanase
Length = 387
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 146/325 (44%), Gaps = 58/325 (17%)
Query: 31 GFIRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAF 90
GF+ T G HF L+G ++ G NAY+ + + + + A + GLTV RTW F
Sbjct: 5 GFVTTEGDHFKLDGKDFYFAGSNAYYFPF-----NDQPDIEKGMTAARAAGLTVFRTWGF 59
Query: 91 SDGG--YRPL------QRSPGSYNEQMFK-------------GLDFVIAEARKYGIKLIL 129
+D Y P G +F+ D V+ A K GIKLI+
Sbjct: 60 NDKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSATKTGIKLIV 119
Query: 130 SLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIH 189
+L NN+ +GG Y G++ DDF+ P +K +K +K ++ RY
Sbjct: 120 ALTNNWADYGGMDVYT--VNLGGKY---HDDFYTVPKIKEAFKRYVKAMVTRY------- 167
Query: 190 YKDDPTIMAWELMNEPRCTSD-----------PSGRTIQAWITEMASYVKSIDRNHLLEA 238
+D I+AWEL NE RC +D + T+ WI EM++YVKS+D NHL+
Sbjct: 168 -RDSEAILAWELANEARCGADGTRNLPRSEKGCTTETVTGWIEEMSAYVKSLDGNHLVTW 226
Query: 239 GLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFL 298
G EG + + + D G DF + +DF T+H YPD W S + +
Sbjct: 227 GGEGGFNRGEDEEDGFYNGAD-GGDFDRELGLRNVDFGTMHLYPDWWSKS------IEWS 279
Query: 299 NNWLDTHIQDAEHILRKPILLAEFG 323
N W+ H KP++L E+G
Sbjct: 280 NQWIHDHAASG-RAANKPVVLEEYG 303
>pdb|1QNO|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNR|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 145/313 (46%), Gaps = 48/313 (15%)
Query: 32 FIRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFS 91
F+ G+ F ++G + + G N YW ++ + + V + F +S GL V R W F+
Sbjct: 4 FVTISGTQFNIDGKVGYFAGTNCYWCSFL----TNHADVDSTFSHISSSGLKVVRVWGFN 59
Query: 92 DGGYRPLQRSPGSYNEQMFKG--------------LDFVIAEARKYGIKLILSLANNYDS 137
D +P SPG Q LD+V+ A ++ +KLI+ NN+
Sbjct: 60 DVNTQP---SPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNWSD 116
Query: 138 FGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIM 197
+GG YVN F + ++ N + Y+ ++ V++R Y + I
Sbjct: 117 YGGINAYVN------AFGGNATTWYTNTAAQTQYRKYVQAVVSR--------YANSTAIF 162
Query: 198 AWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNP- 256
AWEL NEPRC + +Q W T ++ YVKS+D NHL+ G EG G ST P
Sbjct: 163 AWELGNEPRCNGCSTDVIVQ-WATSVSQYVKSLDSNHLVTLGDEGL-GLSTGDGAY--PY 218
Query: 257 NLDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKP 316
GTDF N I +DF T H YPD W ++ ++ N W+ TH A KP
Sbjct: 219 TYGEGTDFAKNVQIKSLDFGTFHLYPDSWGTN------YTWGNGWIQTHAA-ACLAAGKP 271
Query: 317 ILLAEFGKSRKDP 329
+ E+G ++++P
Sbjct: 272 CVFEEYG-AQQNP 283
>pdb|1UUQ|A Chain A, Exo-mannosidase From Cellvibrio Mixtus
pdb|1UZ4|A Chain A, Common Inhibition Of Beta-Glucosidase And Beta-Mannosidase
By Isofagomine Lactam Reflects Different Conformational
Intineraries For Glucoside And Mannoside Hydrolysis
Length = 440
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 160/365 (43%), Gaps = 45/365 (12%)
Query: 22 NVLHVEAGDGFIRTRGSHFLLNGNLYFANGFNAYWLMYVAS--DPSQRSKVSTAFHEAAS 79
NV A + F+R G HF L G Y G N ++ Y+ + + R +++ +
Sbjct: 14 NVATSPAHEHFVRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKA 73
Query: 80 HGLTVARTWAFSD-----GGYRP-LQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133
G+ R A S+ +P + G+Y+E + +GLD+++ E K + ++L N
Sbjct: 74 IGVNNLRVLAVSEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNN 133
Query: 134 NYDSFGGKKQYVNWARSQ-----------GQFLTSDDDFFRNPVVKGYYKNLIKTVLNRY 182
+ GG QY+ W + F+ F+R+ + Y+ ++ ++ R
Sbjct: 134 FWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQEYRKTLEKIITRV 193
Query: 183 NTFTGIHYKDDPTIMAWELMNEPRC----TSDPSGRTIQAWITEMASYVKSIDRNHLLEA 238
N+ G Y DD TIM+W+L NEPR T+ + W+ A+Y+K++D +HL+ +
Sbjct: 194 NSINGKAYVDDATIMSWQLANEPRPGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSS 253
Query: 239 GLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFL 298
G EG G + F+ + P ID+ T H + W + ++
Sbjct: 254 GSEGEMGSVNDMQV-----------FIDAHATPDIDYLTYHMWIRNWSWFDKTKPAETWP 302
Query: 299 NNW------LDTHIQDAEHILRKPILLAEFGKSRKDPGY----STYQRDVMFNTVYYKIY 348
+ W + HI D L KP++L EFG R Y +T RD F V+ +
Sbjct: 303 SAWEKAQNYMRAHI-DVAKQLNKPLVLEEFGLDRDMGSYAMDSTTEYRDNYFRGVFELML 361
Query: 349 SSAKR 353
+S ++
Sbjct: 362 ASLEQ 366
>pdb|3VUP|A Chain A, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
pdb|3VUP|B Chain B, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
Length = 351
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 130/360 (36%), Gaps = 83/360 (23%)
Query: 33 IRTRGSHFLLNGNLYFANGFNAYWLMYV---ASDPSQRSK--VSTAFHEAASHGLTVART 87
+ + HF+LNG F +G N W+ Y QR+K + F + G R
Sbjct: 2 LHIQNGHFVLNGQRVFLSGGNLPWMSYAYDFGDGQWQRNKNRIEPEFKKLHDAGGNSMRL 61
Query: 88 W---------AFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSF 138
W AF+D G+ G+ + M LD A+KY I + L N
Sbjct: 62 WIHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLD----TAKKYNILVFPCLWNA---- 113
Query: 139 GGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMA 198
A +Q D ++ Y +K ++N H K +
Sbjct: 114 ---------AVNQDSHNRLDGLIKDQHKLQSYIDKALKPIVN--------HVKGHVALGG 156
Query: 199 WELMNEPRCTSDP----------------SG----------RTIQAWITEMASYVKSIDR 232
W+LMNEP P SG + I ++ A +K+ D
Sbjct: 157 WDLMNEPEGMMIPDKHNAEKCYDTTALKNSGAGWAGNKYLYQDILRFLNWQADAIKTTDP 216
Query: 233 NHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGI-DFATVHSYPDQWLSSSND 291
L+ G+ + +S +N + +A G+ DF HSY S
Sbjct: 217 GALVTMGV--WNPKSNTDHFNMNNHYSDHCLRLAGGKQKGVFDFYQFHSY-----SWQGK 269
Query: 292 RDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSA 351
D+++ TH Q +++ L KPI++ EF +D G T + MFN VY Y+ A
Sbjct: 270 WDEVAPF-----TH-QASDYGLHKPIVVGEF--WEQDGGGMTITQ--MFNYVYNHGYAGA 319
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 81 GLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGG 140
G+ VA FS + +QR SY+ F LD +I K I L L+ +
Sbjct: 36 GIDVATVNVFS---WAKIQRDEVSYD---FTWLDDIIERLTKENIYLCLATSTGAHPAWM 89
Query: 141 KKQY-----VNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPT 195
K+Y V++ + +F + +P + Y K L + RY KD P
Sbjct: 90 AKKYPDVLRVDYEGRKRKFGGRHNSCPNSPTYRKYAKILAGKLAERY--------KDHPQ 141
Query: 196 IMAWELMNE--PRCTSDPSGRTIQAWITEMASYVKSIDR 232
I+ W + NE C D + + W+ E ++++++
Sbjct: 142 IVMWHVSNEYGGYCYCDNCEKQFRVWLKERYGTLEALNK 180
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 34/155 (21%)
Query: 190 YKDDPTIMAWELMNEPRCTSDPSGRTIQAW---ITEMASYVKSIDRNHLLEAGLEGFYGQ 246
YKD P + +E++NEP P + W + E ++SID+ H + G + G
Sbjct: 122 YKDYPETLFFEILNEPHGNLTP-----EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGI 176
Query: 247 STPQRKRVNPNLDIGTDFVANNLIPGIDFATVH------SYPDQWL----SSSNDR---- 292
S ++ V P + + + P F H ++WL S +D+
Sbjct: 177 SALEKLSV-PKWEKNSIVTIHYYNP---FEFTHQGAEWVEGSEKWLGRKWGSPDDQKHLI 232
Query: 293 DQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRK 327
++ +F+ W + ++PI + EFG RK
Sbjct: 233 EEFNFIEEWSKKN--------KRPIYIGEFGAYRK 259
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 210 DPSGRTIQAWITEMASYVKSIDR-NHLLEAGLEGFYGQST 248
+P R WI + Y + ID + LLE+ LEGF+ +ST
Sbjct: 441 EPDARAAMIWI--VGEYAERIDNADELLESFLEGFHDEST 478
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 210 DPSGRTIQAWITEMASYVKSIDR-NHLLEAGLEGFYGQST 248
+P R WI + Y + ID + LLE+ LEGF+ +ST
Sbjct: 441 EPDARAAMIWI--VGEYAERIDNADELLESFLEGFHDEST 478
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 34/155 (21%)
Query: 190 YKDDPTIMAWELMNEPRCTSDPSGRTIQAW---ITEMASYVKSIDRNHLLEAGLEGFYGQ 246
YKD P + +E++N P P + W + E ++SID+ H + G + G
Sbjct: 122 YKDYPETLFFEILNAPHGNLTP-----EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGI 176
Query: 247 STPQRKRVNPNLDIGTDFVANNLIPGIDFATVH------SYPDQWL----SSSNDR---- 292
S ++ V P + + + P F H ++WL S +D+
Sbjct: 177 SALEKLSV-PKWEKNSIVTIHYYNP---FEFTHQGAEWVEGSEKWLGRKWGSPDDQKHLI 232
Query: 293 DQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRK 327
++ +F+ W + ++PI + EFG RK
Sbjct: 233 EEFNFIEEWSKKN--------KRPIYIGEFGAYRK 259
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 34/155 (21%)
Query: 190 YKDDPTIMAWELMNEPRCTSDPSGRTIQAW---ITEMASYVKSIDRNHLLEAGLEGFYGQ 246
YKD P + +E++N P P + W + E ++SID+ H + G + G
Sbjct: 122 YKDYPETLFFEILNAPHGNLTP-----EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGI 176
Query: 247 STPQRKRVNPNLDIGTDFVANNLIPGIDFATVH------SYPDQWL----SSSNDR---- 292
S ++ V P + + + P F H ++WL S +D+
Sbjct: 177 SALEKLSV-PKWEKNSIVTIHYYNP---FEFTHQGAEWVEGSEKWLGRKWGSPDDQKHLI 232
Query: 293 DQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRK 327
++ +F+ W + ++PI + EFG RK
Sbjct: 233 EEFNFIEEWSKKN--------KRPIYIGEFGAYRK 259
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 34/155 (21%)
Query: 190 YKDDPTIMAWELMNEPRCTSDPSGRTIQAW---ITEMASYVKSIDRNHLLEAGLEGFYGQ 246
YKD P + +E++NEP P + W + E ++SID+ H + G + G
Sbjct: 122 YKDYPETLFFEILNEPHGNLTP-----EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGI 176
Query: 247 STPQRKRVNPNLDIGTDFVANNLIPGIDFATVH------SYPDQWL----SSSNDR---- 292
S ++ V P + + + P F H ++WL S +D+
Sbjct: 177 SALEKLSV-PKWEKNSIVTIHYYNP---FEFTHQGAEWVEGSEKWLGRKWGSPDDQKHLI 232
Query: 293 DQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRK 327
++ +F+ W + ++PI + FG RK
Sbjct: 233 EEFNFIEEWSKKN--------KRPIYIGAFGAYRK 259
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 262 TDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAE 321
TD +A G ATVH + N+R QLS L T + AE +L ++L +
Sbjct: 199 TDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQT--EQAEKLLLAGVMLLD 256
Query: 322 FGKSRKD-PGYSTYQRDVMFNT 342
SR D G T+ RD+ +T
Sbjct: 257 --PSRFDLRGELTHGRDITIDT 276
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 262 TDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAE 321
TD +A G ATVH + N+R QLS L T + AE +L ++L +
Sbjct: 202 TDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQT--EQAEKLLLAGVMLLD 259
Query: 322 FGKSRKD-PGYSTYQRDVMFNT 342
SR D G T+ RD+ +T
Sbjct: 260 --PSRFDLRGELTHGRDITIDT 279
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 131/343 (38%), Gaps = 51/343 (14%)
Query: 33 IRTRGSHFLLNGNLYFANGFNAYWLMYVAS-DPSQRSKVSTAFH----EAASHGLTVART 87
+ G++ NG+ F +G N W+ Y +Q SK + F + SHG R
Sbjct: 5 LSVSGTNLNYNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRV 64
Query: 88 WAFSDGGYRPLQRSPG---SYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144
W +G P + G + + + + A+++ I + +L N G KQ
Sbjct: 65 WLHIEGESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFFTLWN-----GAVKQS 119
Query: 145 VNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNE 204
++ R G + + ++ Y + +K + N K++ + W++MNE
Sbjct: 120 THY-RLNGLMVDTRK-------LQSYIDHALKPMANAL--------KNEKALGGWDIMNE 163
Query: 205 PRCTSDPSGRTIQ-AWITEMASYVKSIDRNHLLEAGLEG-FYGQSTPQRKRVNPNLDIGT 262
P P + + + T S + HL A G F K V+P +
Sbjct: 164 PEGEIKPGESSSEPCFDTRHLSGSGAGWAGHLYSAQEIGRFVNWQAAAIKEVDPGAMVTV 223
Query: 263 DFVANNLIPGIDFATVHS-YPDQWLSSSNDRDQ--LSFLN----NWLDTHIQDA--EHI- 312
+ N+ D H+ Y D L + + LSF +W + ++ +H
Sbjct: 224 G--SWNMKADTDAMGFHNLYSDHCLVKAGGKQSGTLSFYQVHTYDWQNHFGNESPFKHSF 281
Query: 313 ----LRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSA 351
L+KP+++ EF + G S+ + MF Y K YS A
Sbjct: 282 SNFRLKKPMVIGEFNQ-EHGAGMSS---ESMFEWAYTKGYSGA 320
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 143 QYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPT----IMA 198
+Y NWARSQ +L + R VV GY N +K +R +G+ +D + ++
Sbjct: 416 KYANWARSQMDYLLGKNPLNRCYVV-GYSSNSVKYPHHR--AASGLKDANDSSPHKYVLY 472
Query: 199 WELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLL---EAGLEGFYGQSTPQRKRVN 255
L+ P + RT E+A ID N AGL F+G S+ Q ++
Sbjct: 473 GALVGGPDASDQHVDRTNDYIYNEVA-----IDYNAAFVGACAGLYRFFGDSSMQ---ID 524
Query: 256 PNL 258
P++
Sbjct: 525 PSM 527
>pdb|3KZS|A Chain A, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.10 A Resolution
pdb|3KZS|B Chain B, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.10 A Resolution
pdb|3KZS|C Chain C, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.10 A Resolution
pdb|3KZS|D Chain D, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.10 A Resolution
Length = 463
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 182 YNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHL 235
Y F YKD+P I+ W + + R G A +A+ +K+ID+NHL
Sbjct: 146 YGKFLAERYKDEPNII-WFIGGDIR------GDVKTAEWEALATSIKAIDKNHL 192
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 28/133 (21%)
Query: 191 KDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQ 250
K+ P ++ W + NEP + +G ++ I ++ KS+D S P
Sbjct: 418 KNHPAVVMWSVANEPASHLESAGYYLKMVI----AHTKSLD--------------PSRPV 459
Query: 251 RKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAE 310
N N + A+ P +D ++SY S +D L + L T ++
Sbjct: 460 TFVSNSN------YAADKGAPYVDVICLNSY----YSWYHDYGHLELIQLQLATQFENWY 509
Query: 311 HILRKPILLAEFG 323
+KPI+ +E+G
Sbjct: 510 KKYQKPIIQSEYG 522
>pdb|2YFK|A Chain A, Crystal Structure Of A Putative Transcarbamoylase From
Enterococcus Faecalis
pdb|2YFK|B Chain B, Crystal Structure Of A Putative Transcarbamoylase From
Enterococcus Faecalis
Length = 418
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 81 GLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGI--KLILSLANNYDSF 138
G VA TWA+S +PL G G+D V+A Y I ++ N F
Sbjct: 188 GKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEF 247
Query: 139 GG 140
GG
Sbjct: 248 GG 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,616,590
Number of Sequences: 62578
Number of extensions: 538188
Number of successful extensions: 1124
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 28
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)