Query 013811
Match_columns 436
No_of_seqs 250 out of 2157
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 9.4E-30 2E-34 246.1 23.8 264 43-368 4-280 (281)
2 COG3934 Endo-beta-mannanase [C 100.0 9.3E-31 2E-35 255.7 8.4 292 40-385 4-307 (587)
3 PRK10150 beta-D-glucuronidase; 99.9 9.7E-26 2.1E-30 240.8 28.3 290 29-382 272-577 (604)
4 PF02836 Glyco_hydro_2_C: Glyc 99.9 2.2E-22 4.9E-27 197.0 22.7 158 33-240 1-158 (298)
5 TIGR03356 BGL beta-galactosida 99.9 2.9E-20 6.4E-25 189.8 22.8 282 67-382 53-411 (427)
6 PRK10340 ebgA cryptic beta-D-g 99.9 3.5E-20 7.5E-25 206.8 23.8 234 28-369 313-549 (1021)
7 PRK09525 lacZ beta-D-galactosi 99.9 7.8E-20 1.7E-24 203.6 25.2 244 29-369 330-575 (1027)
8 PF02449 Glyco_hydro_42: Beta- 99.9 1.9E-20 4.1E-25 189.0 18.4 284 66-400 8-373 (374)
9 PLN02998 beta-glucosidase 99.8 4.6E-19 1E-23 183.1 22.5 284 67-382 81-463 (497)
10 PLN02814 beta-glucosidase 99.8 4E-18 8.8E-23 176.4 26.1 284 67-382 76-458 (504)
11 PRK09593 arb 6-phospho-beta-gl 99.8 1.3E-18 2.7E-23 179.6 22.2 284 67-382 72-445 (478)
12 PLN02849 beta-glucosidase 99.8 4.5E-18 9.8E-23 176.0 25.9 284 67-382 78-458 (503)
13 TIGR01233 lacG 6-phospho-beta- 99.8 2.2E-18 4.8E-23 177.5 23.2 282 67-382 52-441 (467)
14 PRK09589 celA 6-phospho-beta-g 99.8 2.8E-18 6E-23 177.0 23.9 284 67-382 66-444 (476)
15 PRK13511 6-phospho-beta-galact 99.8 2E-18 4.4E-23 178.1 22.1 283 67-382 53-443 (469)
16 COG2723 BglB Beta-glucosidase/ 99.8 9.1E-18 2E-22 168.0 24.7 283 67-382 58-429 (460)
17 PRK09852 cryptic 6-phospho-bet 99.8 1.1E-17 2.4E-22 172.2 23.3 284 67-382 70-441 (474)
18 PRK15014 6-phospho-beta-glucos 99.8 1.4E-17 3E-22 171.8 23.8 284 67-382 68-445 (477)
19 PF00232 Glyco_hydro_1: Glycos 99.8 1.1E-19 2.5E-24 187.5 8.5 279 67-377 57-420 (455)
20 PF03198 Glyco_hydro_72: Gluca 99.7 1.4E-16 3.1E-21 151.7 19.2 276 28-382 6-291 (314)
21 COG3250 LacZ Beta-galactosidas 99.6 6.8E-15 1.5E-19 158.7 17.3 156 27-242 278-435 (808)
22 PF07745 Glyco_hydro_53: Glyco 99.6 1.5E-14 3.3E-19 141.5 16.4 243 70-367 26-300 (332)
23 PF13204 DUF4038: Protein of u 99.5 2.3E-13 5E-18 132.2 16.9 168 37-241 2-187 (289)
24 PLN03059 beta-galactosidase; P 99.5 7.1E-13 1.5E-17 141.6 20.1 200 3-225 3-210 (840)
25 KOG0626 Beta-glucosidase, lact 99.5 3.2E-12 6.9E-17 129.4 22.7 282 67-381 90-480 (524)
26 smart00633 Glyco_10 Glycosyl h 99.5 2E-12 4.2E-17 123.8 19.9 221 95-375 3-234 (254)
27 PF01301 Glyco_hydro_35: Glyco 99.4 4.9E-12 1.1E-16 124.6 18.2 168 39-233 1-173 (319)
28 COG2730 BglC Endoglucanase [Ca 99.4 7.5E-12 1.6E-16 127.6 16.1 114 70-207 75-193 (407)
29 PF12876 Cellulase-like: Sugar 99.4 7.5E-13 1.6E-17 105.5 6.0 75 190-281 5-88 (88)
30 COG3867 Arabinogalactan endo-1 99.3 8.8E-10 1.9E-14 103.3 22.1 271 48-364 39-341 (403)
31 COG1874 LacA Beta-galactosidas 99.1 8.6E-10 1.9E-14 116.5 14.4 175 35-232 3-191 (673)
32 PF01229 Glyco_hydro_39: Glyco 99.1 5.9E-10 1.3E-14 116.4 12.8 283 67-383 38-346 (486)
33 KOG0496 Beta-galactosidase [Ca 98.9 1.5E-08 3.3E-13 104.8 15.3 152 33-207 20-177 (649)
34 PF00331 Glyco_hydro_10: Glyco 98.8 1.9E-08 4.2E-13 99.4 10.6 243 74-368 27-288 (320)
35 KOG2230 Predicted beta-mannosi 98.7 2.1E-07 4.6E-12 94.1 12.4 118 40-207 330-447 (867)
36 COG5309 Exo-beta-1,3-glucanase 98.5 2.7E-05 5.9E-10 72.6 20.9 202 67-347 62-269 (305)
37 COG3693 XynA Beta-1,4-xylanase 98.5 6.7E-06 1.5E-10 78.8 17.0 116 94-238 68-191 (345)
38 PF11790 Glyco_hydro_cc: Glyco 98.5 3E-06 6.5E-11 80.3 14.7 143 196-364 66-211 (239)
39 PF14488 DUF4434: Domain of un 98.4 8.9E-06 1.9E-10 72.5 14.3 139 65-239 17-160 (166)
40 COG3934 Endo-beta-mannanase [C 98.2 1.3E-08 2.7E-13 101.3 -8.6 329 27-367 32-414 (587)
41 PF14587 Glyco_hydr_30_2: O-Gl 98.0 0.0011 2.3E-08 66.1 21.2 266 78-377 57-366 (384)
42 COG5520 O-Glycosyl hydrolase [ 97.9 0.00099 2.2E-08 64.7 17.0 238 69-367 66-311 (433)
43 PF02638 DUF187: Glycosyl hydr 97.7 0.0031 6.8E-08 62.1 17.8 207 66-282 17-262 (311)
44 PF13200 DUF4015: Putative gly 97.3 0.083 1.8E-06 51.9 22.1 272 66-367 11-314 (316)
45 PF02055 Glyco_hydro_30: O-Gly 97.1 0.021 4.5E-07 59.8 16.9 253 68-373 101-389 (496)
46 PF14871 GHL6: Hypothetical gl 96.6 0.014 2.9E-07 50.0 8.9 107 70-181 2-122 (132)
47 PF03662 Glyco_hydro_79n: Glyc 96.5 0.00099 2.1E-08 65.2 1.4 23 110-132 108-130 (319)
48 TIGR02402 trehalose_TreZ malto 96.5 0.057 1.2E-06 57.4 14.3 147 65-233 108-271 (542)
49 PF12891 Glyco_hydro_44: Glyco 96.4 0.0016 3.5E-08 60.7 2.3 120 110-237 23-176 (239)
50 PRK05402 glycogen branching en 96.4 0.09 2E-06 57.9 15.9 162 70-237 268-455 (726)
51 TIGR01515 branching_enzym alph 96.3 0.087 1.9E-06 56.9 14.7 163 69-237 157-346 (613)
52 PRK10785 maltodextrin glucosid 96.3 0.055 1.2E-06 58.3 12.9 62 66-132 177-247 (598)
53 PRK12313 glycogen branching en 96.2 0.17 3.6E-06 55.0 16.6 161 70-237 173-359 (633)
54 PLN02705 beta-amylase 96.2 0.074 1.6E-06 55.6 12.4 130 66-229 266-402 (681)
55 COG3534 AbfA Alpha-L-arabinofu 96.1 0.075 1.6E-06 53.7 11.7 178 71-283 52-246 (501)
56 PLN02801 beta-amylase 96.1 0.089 1.9E-06 54.1 12.5 129 67-229 36-171 (517)
57 PLN02905 beta-amylase 96.0 0.087 1.9E-06 55.3 12.1 130 66-229 284-420 (702)
58 PRK14705 glycogen branching en 96.0 0.19 4.1E-06 57.8 15.9 164 68-237 766-955 (1224)
59 PLN02161 beta-amylase 95.9 0.1 2.3E-06 53.6 12.3 129 67-228 116-250 (531)
60 PLN02803 beta-amylase 95.9 0.092 2E-06 54.2 11.7 130 66-229 105-241 (548)
61 PRK14706 glycogen branching en 95.8 0.25 5.5E-06 53.4 15.2 160 69-237 169-355 (639)
62 PLN00197 beta-amylase; Provisi 95.7 0.12 2.7E-06 53.5 11.9 127 66-226 125-258 (573)
63 smart00642 Aamy Alpha-amylase 95.7 0.034 7.5E-07 49.6 7.0 68 66-133 17-92 (166)
64 COG1649 Uncharacterized protei 95.6 0.32 7E-06 49.4 14.2 196 65-281 61-307 (418)
65 PLN02960 alpha-amylase 95.5 0.62 1.4E-05 51.5 17.0 161 68-238 417-609 (897)
66 PRK12568 glycogen branching en 95.3 0.39 8.4E-06 52.5 14.6 163 68-237 270-459 (730)
67 PF01120 Alpha_L_fucos: Alpha- 95.2 0.67 1.4E-05 46.4 15.2 143 68-237 91-242 (346)
68 TIGR02104 pulA_typeI pullulana 94.9 0.47 1E-05 51.2 13.9 143 72-237 168-346 (605)
69 COG0296 GlgB 1,4-alpha-glucan 94.7 0.45 9.7E-06 50.9 12.7 173 51-234 144-351 (628)
70 cd06565 GH20_GcnA-like Glycosy 94.6 0.79 1.7E-05 44.9 13.6 159 66-237 15-183 (301)
71 PRK03705 glycogen debranching 94.3 0.28 6.1E-06 53.3 10.4 109 73-181 184-327 (658)
72 PLN02447 1,4-alpha-glucan-bran 94.3 1.2 2.6E-05 49.0 15.0 163 69-237 252-443 (758)
73 TIGR02403 trehalose_treC alpha 94.2 2.2 4.7E-05 45.5 16.8 62 66-132 25-96 (543)
74 PF00128 Alpha-amylase: Alpha 94.1 0.05 1.1E-06 52.7 3.8 65 68-132 4-73 (316)
75 TIGR02102 pullulan_Gpos pullul 94.0 1.2 2.6E-05 51.0 15.0 148 68-236 480-668 (1111)
76 COG3664 XynB Beta-xylosidase [ 93.4 1.2 2.7E-05 44.7 12.0 233 75-368 12-257 (428)
77 cd02742 GH20_hexosaminidase Be 93.1 3.8 8.2E-05 40.2 15.2 145 67-231 15-184 (303)
78 TIGR02103 pullul_strch alpha-1 93.0 2 4.4E-05 48.2 14.4 110 110-243 403-527 (898)
79 cd06564 GH20_DspB_LnbB-like Gl 92.3 7.5 0.00016 38.5 16.3 145 67-232 16-194 (326)
80 PLN02361 alpha-amylase 92.2 0.67 1.4E-05 47.3 8.8 80 43-132 9-97 (401)
81 PF07488 Glyco_hydro_67M: Glyc 92.1 0.62 1.3E-05 45.0 7.7 131 66-231 55-188 (328)
82 cd06545 GH18_3CO4_chitinase Th 92.0 7.1 0.00015 37.1 15.2 94 111-240 46-139 (253)
83 PLN00196 alpha-amylase; Provis 91.6 1.7 3.7E-05 44.8 11.0 63 68-132 44-113 (428)
84 PRK10933 trehalose-6-phosphate 91.4 0.64 1.4E-05 49.6 7.9 62 66-132 31-102 (551)
85 TIGR02456 treS_nterm trehalose 91.3 0.56 1.2E-05 49.9 7.5 66 65-132 25-97 (539)
86 cd06568 GH20_SpHex_like A subg 91.2 7.2 0.00016 38.7 14.7 143 67-232 17-189 (329)
87 smart00812 Alpha_L_fucos Alpha 91.1 5 0.00011 40.8 13.7 139 67-234 80-226 (384)
88 PRK09441 cytoplasmic alpha-amy 89.9 1 2.3E-05 47.1 7.8 65 68-132 22-102 (479)
89 PRK09505 malS alpha-amylase; R 89.8 1.2 2.5E-05 48.7 8.2 66 67-132 229-313 (683)
90 cd06603 GH31_GANC_GANAB_alpha 89.7 10 0.00023 37.7 14.5 127 67-207 23-165 (339)
91 PRK09936 hypothetical protein; 89.1 23 0.00049 34.3 16.3 58 66-133 36-94 (296)
92 TIGR01531 glyc_debranch glycog 88.8 1.4 3.1E-05 51.0 8.2 98 32-132 98-206 (1464)
93 PF01373 Glyco_hydro_14: Glyco 88.8 0.52 1.1E-05 47.6 4.3 118 68-203 16-154 (402)
94 TIGR02401 trehalose_TreY malto 87.9 1.4 3.1E-05 48.7 7.3 62 66-132 14-86 (825)
95 PRK14511 maltooligosyl trehalo 87.8 1.4 3.1E-05 49.0 7.3 61 67-132 19-90 (879)
96 cd06602 GH31_MGAM_SI_GAA This 87.5 9.9 0.00021 37.9 12.6 156 67-237 23-198 (339)
97 cd06562 GH20_HexA_HexB-like Be 87.4 27 0.00058 35.0 15.7 111 67-181 17-147 (348)
98 cd06563 GH20_chitobiase-like T 87.1 24 0.00051 35.5 15.2 107 67-181 17-163 (357)
99 PF02065 Melibiase: Melibiase; 87.1 18 0.00039 36.9 14.3 178 48-242 41-236 (394)
100 PF05089 NAGLU: Alpha-N-acetyl 87.0 2.1 4.5E-05 42.2 7.2 157 65-238 16-216 (333)
101 TIGR02100 glgX_debranch glycog 86.3 1.9 4E-05 47.3 7.2 59 73-132 189-266 (688)
102 COG0366 AmyA Glycosidases [Car 86.2 1.5 3.2E-05 45.9 6.2 62 66-132 27-98 (505)
103 PLN02784 alpha-amylase 86.0 4.8 0.0001 44.7 10.0 81 43-132 500-589 (894)
104 cd06547 GH85_ENGase Endo-beta- 85.5 2.7 5.9E-05 41.9 7.3 95 115-237 50-145 (339)
105 PRK14507 putative bifunctional 85.5 1.9 4.2E-05 51.3 7.1 62 67-133 757-829 (1693)
106 PF00728 Glyco_hydro_20: Glyco 85.2 2.7 5.8E-05 41.9 7.3 150 67-237 17-214 (351)
107 PRK14510 putative bifunctional 85.0 2 4.4E-05 50.1 7.0 60 72-132 191-268 (1221)
108 KOG2566 Beta-glucocerebrosidas 84.5 42 0.0009 33.9 14.6 170 166-377 226-418 (518)
109 TIGR01370 cysRS possible cyste 84.3 31 0.00068 34.0 13.9 70 163-237 141-210 (315)
110 cd06570 GH20_chitobiase-like_1 83.1 23 0.00049 34.9 12.6 63 67-132 17-89 (311)
111 COG1523 PulA Type II secretory 82.6 3.4 7.5E-05 45.0 7.1 58 74-132 206-286 (697)
112 cd02875 GH18_chitobiase Chitob 82.5 10 0.00022 38.2 10.1 91 114-239 67-157 (358)
113 KOG2233 Alpha-N-acetylglucosam 79.8 25 0.00055 36.3 11.5 157 66-239 76-281 (666)
114 PRK13398 3-deoxy-7-phosphohept 79.6 21 0.00047 34.3 10.7 85 33-134 16-101 (266)
115 cd06600 GH31_MGAM-like This fa 79.4 36 0.00078 33.6 12.6 157 67-237 23-194 (317)
116 PF00332 Glyco_hydro_17: Glyco 79.2 23 0.0005 34.9 11.1 112 70-238 15-128 (310)
117 KOG1066 Glucosidase II catalyt 78.4 7.3 0.00016 42.0 7.5 42 159-211 475-517 (915)
118 cd06595 GH31_xylosidase_XylS-l 77.9 19 0.00042 35.0 10.1 128 67-208 24-163 (292)
119 COG3589 Uncharacterized conser 77.4 6.5 0.00014 38.7 6.3 56 67-132 15-70 (360)
120 PF07555 NAGidase: beta-N-acet 76.5 24 0.00051 34.7 10.1 68 64-133 11-78 (306)
121 PRK09856 fructoselysine 3-epim 75.7 5.7 0.00012 38.0 5.7 61 68-132 90-150 (275)
122 PF05913 DUF871: Bacterial pro 75.6 6.2 0.00013 39.6 6.0 56 67-132 13-68 (357)
123 cd06592 GH31_glucosidase_KIAA1 75.4 36 0.00078 33.3 11.3 122 66-206 28-167 (303)
124 PRK08673 3-deoxy-7-phosphohept 75.2 14 0.00031 36.7 8.3 77 43-134 91-167 (335)
125 PLN02877 alpha-amylase/limit d 75.1 8.5 0.00018 43.6 7.4 120 109-243 464-598 (970)
126 PRK14565 triosephosphate isome 75.1 19 0.00042 33.9 8.8 115 74-240 78-196 (237)
127 cd06542 GH18_EndoS-like Endo-b 74.0 62 0.0013 30.5 12.3 126 110-283 50-178 (255)
128 PF01261 AP_endonuc_2: Xylose 73.7 28 0.00061 31.1 9.5 130 68-234 27-158 (213)
129 TIGR02455 TreS_stutzeri trehal 73.6 12 0.00026 40.4 7.6 62 71-132 77-151 (688)
130 TIGR03234 OH-pyruv-isom hydrox 73.2 8.2 0.00018 36.5 6.0 63 68-134 84-146 (254)
131 PLN02229 alpha-galactosidase 72.9 14 0.00031 37.8 7.9 79 48-133 63-150 (427)
132 PRK13210 putative L-xylulose 5 72.8 8.5 0.00018 36.9 6.1 62 67-132 93-154 (284)
133 COG3054 Predicted transcriptio 72.4 6.6 0.00014 34.1 4.5 81 7-87 6-94 (184)
134 cd06591 GH31_xylosidase_XylS X 72.3 32 0.0007 33.9 10.2 125 67-207 23-162 (319)
135 PRK13397 3-deoxy-7-phosphohept 71.3 15 0.00032 35.0 7.1 63 66-134 27-89 (250)
136 PRK14582 pgaB outer membrane N 71.2 87 0.0019 34.3 13.7 166 67-239 333-537 (671)
137 KOG1348 Asparaginyl peptidases 70.7 22 0.00047 35.4 8.1 96 1-104 1-102 (477)
138 cd06569 GH20_Sm-chitobiase-lik 70.4 15 0.00032 38.2 7.5 63 67-132 21-118 (445)
139 TIGR00542 hxl6Piso_put hexulos 70.3 11 0.00025 36.1 6.3 61 68-132 94-154 (279)
140 PLN02923 xylose isomerase 70.1 89 0.0019 32.0 12.4 136 68-234 123-269 (478)
141 PRK13209 L-xylulose 5-phosphat 68.9 11 0.00023 36.3 5.8 61 68-132 99-159 (283)
142 cd06601 GH31_lyase_GLase GLase 68.8 29 0.00064 34.5 9.0 115 67-208 23-137 (332)
143 PF08194 DIM: DIM protein; In 67.4 8.2 0.00018 24.9 3.0 12 1-12 1-12 (36)
144 PRK12595 bifunctional 3-deoxy- 66.1 49 0.0011 33.3 10.0 80 40-134 112-192 (360)
145 PLN03244 alpha-amylase; Provis 65.4 61 0.0013 36.1 10.9 126 110-237 440-583 (872)
146 PF03659 Glyco_hydro_71: Glyco 65.4 39 0.00084 34.4 9.2 54 66-132 15-68 (386)
147 PF01261 AP_endonuc_2: Xylose 65.3 13 0.00029 33.3 5.5 65 67-133 70-134 (213)
148 PRK00042 tpiA triosephosphate 65.2 39 0.00084 32.2 8.6 46 74-133 79-128 (250)
149 PRK09997 hydroxypyruvate isome 65.0 16 0.00034 34.6 6.1 64 67-134 84-147 (258)
150 KOG3698 Hyaluronoglucosaminida 64.9 44 0.00096 35.3 9.3 83 42-132 11-95 (891)
151 cd06604 GH31_glucosidase_II_Ma 64.5 65 0.0014 32.0 10.6 126 67-207 23-162 (339)
152 TIGR01626 ytfJ_HI0045 conserve 63.7 17 0.00038 32.8 5.7 67 14-84 13-91 (184)
153 TIGR00542 hxl6Piso_put hexulos 63.7 1.1E+02 0.0023 29.3 11.6 106 68-205 52-157 (279)
154 PF01055 Glyco_hydro_31: Glyco 63.0 78 0.0017 32.6 11.2 126 67-207 42-183 (441)
155 PF02057 Glyco_hydro_59: Glyco 62.8 32 0.00068 37.3 8.2 219 72-367 65-295 (669)
156 cd06589 GH31 The enzymes of gl 62.3 1.5E+02 0.0032 28.3 12.9 64 66-132 22-87 (265)
157 cd00598 GH18_chitinase-like Th 61.9 1.2E+02 0.0026 27.3 11.2 123 115-282 53-177 (210)
158 cd02874 GH18_CFLE_spore_hydrol 61.3 48 0.001 32.4 8.9 95 114-238 48-142 (313)
159 PTZ00333 triosephosphate isome 60.4 89 0.0019 29.9 10.1 50 74-133 82-131 (255)
160 COG1501 Alpha-glucosidases, fa 59.6 77 0.0017 35.4 10.8 152 67-238 279-461 (772)
161 PF04914 DltD_C: DltD C-termin 58.5 72 0.0016 27.1 8.2 55 108-181 33-87 (130)
162 cd00019 AP2Ec AP endonuclease 58.3 29 0.00063 33.2 6.7 61 67-132 84-144 (279)
163 PRK14042 pyruvate carboxylase 57.9 36 0.00079 36.7 7.7 63 47-130 80-142 (596)
164 COG3623 SgaU Putative L-xylulo 57.7 1.2E+02 0.0026 28.6 9.9 69 107-207 92-161 (287)
165 KOG0470 1,4-alpha-glucan branc 57.5 16 0.00034 39.8 4.8 111 68-181 255-393 (757)
166 PLN02429 triosephosphate isome 56.3 74 0.0016 31.4 8.9 23 111-133 163-189 (315)
167 PF07071 DUF1341: Protein of u 55.8 38 0.00083 31.0 6.3 47 68-128 135-181 (218)
168 PRK12677 xylose isomerase; Pro 55.5 21 0.00047 36.2 5.4 65 68-132 114-180 (384)
169 PRK14567 triosephosphate isome 55.2 1.2E+02 0.0026 28.9 10.0 49 74-132 78-126 (253)
170 KOG0471 Alpha-amylase [Carbohy 55.2 21 0.00045 38.2 5.4 63 68-132 40-109 (545)
171 cd02872 GH18_chitolectin_chito 54.7 1.5E+02 0.0032 29.6 11.3 104 111-240 56-160 (362)
172 PF14883 GHL13: Hypothetical g 54.1 2.2E+02 0.0047 27.7 13.1 165 67-235 16-188 (294)
173 PLN03059 beta-galactosidase; P 53.8 46 0.001 37.2 7.8 121 5-125 8-170 (840)
174 PLN02692 alpha-galactosidase 52.5 70 0.0015 32.8 8.4 79 43-132 50-142 (412)
175 PF10566 Glyco_hydro_97: Glyco 52.5 32 0.00069 33.2 5.7 51 70-134 108-158 (273)
176 PRK13209 L-xylulose 5-phosphat 51.8 2.1E+02 0.0046 27.1 11.5 100 68-203 57-160 (283)
177 cd06598 GH31_transferase_CtsZ 51.7 98 0.0021 30.4 9.3 122 67-206 23-166 (317)
178 PRK14582 pgaB outer membrane N 51.0 19 0.00041 39.3 4.3 66 66-135 70-143 (671)
179 smart00636 Glyco_18 Glycosyl h 50.9 1.5E+02 0.0033 29.0 10.6 99 112-240 53-155 (334)
180 PRK12581 oxaloacetate decarbox 50.7 57 0.0012 34.0 7.6 49 68-132 105-153 (468)
181 cd07937 DRE_TIM_PC_TC_5S Pyruv 50.4 48 0.001 31.9 6.7 48 68-131 91-138 (275)
182 PF02679 ComA: (2R)-phospho-3- 50.0 36 0.00077 32.3 5.5 51 68-132 84-134 (244)
183 PF06415 iPGM_N: BPG-independe 49.5 84 0.0018 29.4 7.8 77 43-132 26-102 (223)
184 PF14481 Fimbrial_PilY2: Type 49.4 12 0.00025 30.4 1.8 45 1-49 1-55 (118)
185 TIGR01361 DAHP_synth_Bsub phos 49.4 88 0.0019 29.9 8.2 85 33-134 14-99 (260)
186 PLN02763 hydrolase, hydrolyzin 49.3 1.1E+02 0.0024 35.1 10.0 125 67-207 200-339 (978)
187 PF14701 hDGE_amylase: glucano 48.7 51 0.0011 33.9 6.7 65 68-132 22-98 (423)
188 PRK13396 3-deoxy-7-phosphohept 48.2 2E+02 0.0043 28.9 10.7 89 31-134 83-175 (352)
189 COG3623 SgaU Putative L-xylulo 48.2 2.5E+02 0.0053 26.6 10.5 148 68-238 96-255 (287)
190 PF06316 Ail_Lom: Enterobacter 48.2 14 0.00031 33.6 2.4 23 1-23 1-23 (199)
191 PRK09856 fructoselysine 3-epim 48.1 2.4E+02 0.0053 26.5 11.5 129 69-237 48-179 (275)
192 smart00481 POLIIIAc DNA polyme 47.4 62 0.0013 23.4 5.5 47 68-131 15-61 (67)
193 cd00311 TIM Triosephosphate is 47.3 2.5E+02 0.0055 26.5 11.8 50 74-133 77-126 (242)
194 TIGR03849 arch_ComA phosphosul 46.9 54 0.0012 30.9 6.1 50 68-131 71-120 (237)
195 cd06599 GH31_glycosidase_Aec37 46.7 2.4E+02 0.0052 27.7 11.2 124 67-206 28-170 (317)
196 cd02871 GH18_chitinase_D-like 46.3 2.9E+02 0.0064 27.0 12.4 94 111-241 60-156 (312)
197 TIGR03581 EF_0839 conserved hy 46.0 41 0.0009 31.1 5.0 46 68-127 135-180 (236)
198 PRK09989 hypothetical protein; 45.7 40 0.00087 31.9 5.3 61 68-132 85-145 (258)
199 PRK01060 endonuclease IV; Prov 45.5 1.3E+02 0.0028 28.6 8.9 52 68-127 12-63 (281)
200 PF03644 Glyco_hydro_85: Glyco 45.3 35 0.00075 33.7 4.9 94 115-237 46-140 (311)
201 PF13547 GTA_TIM: GTA TIM-barr 44.1 35 0.00075 32.9 4.4 15 313-327 205-219 (299)
202 PLN02561 triosephosphate isome 44.0 2.9E+02 0.0064 26.3 12.4 50 74-133 81-130 (253)
203 PRK12330 oxaloacetate decarbox 43.1 80 0.0017 33.3 7.3 48 68-131 97-144 (499)
204 COG0276 HemH Protoheme ferro-l 42.1 2.6E+02 0.0056 27.7 10.2 108 113-230 104-219 (320)
205 PRK10081 entericidin B membran 41.5 20 0.00042 24.8 1.7 23 1-23 2-25 (48)
206 PRK09997 hydroxypyruvate isome 41.1 3.1E+02 0.0067 25.7 12.6 92 107-234 81-172 (258)
207 COG5016 Pyruvate/oxaloacetate 40.4 78 0.0017 32.3 6.3 49 68-132 98-146 (472)
208 cd06593 GH31_xylosidase_YicI Y 39.9 67 0.0014 31.4 6.0 156 66-238 22-204 (308)
209 PRK14040 oxaloacetate decarbox 39.8 98 0.0021 33.5 7.6 47 68-130 97-143 (593)
210 PRK12331 oxaloacetate decarbox 39.7 76 0.0016 33.0 6.5 48 68-131 96-143 (448)
211 KOG2331 Predicted glycosylhydr 39.4 75 0.0016 32.5 6.1 89 118-237 118-208 (526)
212 KOG2499 Beta-N-acetylhexosamin 39.4 85 0.0018 32.7 6.6 64 68-132 198-271 (542)
213 PRK10318 hypothetical protein; 39.4 13 0.00029 31.0 0.8 15 31-45 34-48 (121)
214 cd07944 DRE_TIM_HOA_like 4-hyd 39.2 63 0.0014 31.0 5.6 47 71-133 85-131 (266)
215 PF02472 ExbD: Biopolymer tran 39.0 84 0.0018 26.0 5.7 47 68-127 76-122 (130)
216 COG2342 Predicted extracellula 38.9 3.1E+02 0.0066 26.6 9.8 66 160-238 118-190 (300)
217 cd01299 Met_dep_hydrolase_A Me 38.7 1.3E+02 0.0028 29.5 7.9 61 66-131 118-180 (342)
218 cd07948 DRE_TIM_HCS Saccharomy 38.5 43 0.00092 32.1 4.2 59 72-133 75-134 (262)
219 PF00121 TIM: Triosephosphate 37.8 26 0.00057 33.2 2.6 50 74-133 77-126 (244)
220 COG4124 ManB Beta-mannanase [C 37.3 4.4E+02 0.0095 26.4 12.3 171 167-368 156-340 (355)
221 PRK10658 putative alpha-glucos 37.3 1.6E+02 0.0035 32.3 8.8 108 67-180 282-406 (665)
222 COG1306 Uncharacterized conser 37.1 75 0.0016 31.0 5.4 65 66-132 75-145 (400)
223 PF00682 HMGL-like: HMGL-like 36.8 1.4E+02 0.0029 27.8 7.3 64 67-132 66-129 (237)
224 cd07939 DRE_TIM_NifV Streptomy 36.7 43 0.00092 31.9 3.9 60 71-132 72-131 (259)
225 PF10035 DUF2179: Uncharacteri 35.6 39 0.00085 23.7 2.6 19 221-239 30-48 (55)
226 PF07287 DUF1446: Protein of u 35.4 42 0.0009 33.8 3.7 61 69-130 11-77 (362)
227 COG4594 FecB ABC-type Fe3+-cit 35.1 1.2E+02 0.0027 28.9 6.4 68 1-87 1-73 (310)
228 KOG4389 Acetylcholinesterase/B 35.0 57 0.0012 34.1 4.6 58 1-59 1-66 (601)
229 COG0269 SgbH 3-hexulose-6-phos 34.9 1.2E+02 0.0027 28.1 6.3 47 73-136 72-118 (217)
230 PRK05692 hydroxymethylglutaryl 34.4 54 0.0012 31.8 4.3 60 71-132 82-141 (287)
231 PF02156 Glyco_hydro_26: Glyco 33.9 2E+02 0.0044 28.3 8.2 78 190-283 146-232 (311)
232 COG1464 NlpA ABC-type metal io 33.9 2.7E+02 0.0058 26.8 8.6 62 68-131 42-104 (268)
233 KOG1065 Maltase glucoamylase a 33.5 2.9E+02 0.0064 30.8 9.9 61 67-132 310-372 (805)
234 PRK08195 4-hyroxy-2-oxovalerat 33.4 97 0.0021 30.9 6.0 47 71-133 91-137 (337)
235 PRK14581 hmsF outer membrane N 33.4 91 0.002 34.2 6.1 69 66-135 70-143 (672)
236 COG3622 Hfi Hydroxypyruvate is 32.9 1.1E+02 0.0025 28.9 5.8 64 67-134 84-147 (260)
237 PF00879 Defensin_propep: Defe 32.7 54 0.0012 23.1 2.8 24 1-24 1-24 (52)
238 PRK10781 rcsF outer membrane l 32.5 1.9E+02 0.0042 24.7 6.7 45 44-89 60-108 (133)
239 PRK10894 lipopolysaccharide tr 32.5 97 0.0021 27.8 5.3 48 3-51 3-52 (180)
240 TIGR02631 xylA_Arthro xylose i 32.3 96 0.0021 31.5 5.8 66 68-133 115-182 (382)
241 COG3280 TreY Maltooligosyl tre 32.0 1.1E+02 0.0025 33.6 6.4 65 68-134 19-91 (889)
242 TIGR03217 4OH_2_O_val_ald 4-hy 32.0 1.1E+02 0.0024 30.4 6.1 46 71-132 90-135 (333)
243 COG2876 AroA 3-deoxy-D-arabino 32.0 2E+02 0.0042 27.7 7.2 62 66-133 57-118 (286)
244 PF03032 Brevenin: Brevenin/es 31.9 27 0.00058 24.0 1.2 20 4-23 5-24 (46)
245 COG3661 AguA Alpha-glucuronida 31.4 3.9E+02 0.0085 27.6 9.6 59 68-131 183-241 (684)
246 cd07943 DRE_TIM_HOA 4-hydroxy- 31.1 1.1E+02 0.0025 29.0 5.9 46 71-132 88-133 (263)
247 PF07172 GRP: Glycine rich pro 31.1 32 0.0007 27.5 1.7 7 13-19 15-21 (95)
248 PF10566 Glyco_hydro_97: Glyco 30.9 1.5E+02 0.0033 28.6 6.6 65 66-134 30-96 (273)
249 TIGR02090 LEU1_arch isopropylm 30.6 61 0.0013 32.7 4.0 62 70-133 73-134 (363)
250 cd06597 GH31_transferase_CtsY 30.2 5.6E+02 0.012 25.4 14.7 67 67-133 23-107 (340)
251 cd06548 GH18_chitinase The GH1 29.9 5.2E+02 0.011 25.3 10.5 101 111-240 70-182 (322)
252 COG0469 PykF Pyruvate kinase [ 29.6 1.3E+02 0.0028 31.5 6.3 49 70-130 19-67 (477)
253 cd06549 GH18_trifunctional GH1 29.2 5.3E+02 0.012 24.9 12.1 62 161-238 82-143 (298)
254 cd07945 DRE_TIM_CMS Leptospira 29.2 66 0.0014 31.1 3.9 60 71-133 77-137 (280)
255 PRK10426 alpha-glucosidase; Pr 29.0 7.9E+02 0.017 26.8 15.9 153 67-237 220-407 (635)
256 PRK05434 phosphoglyceromutase; 29.0 1.8E+02 0.0039 30.8 7.3 57 68-132 128-184 (507)
257 TIGR01235 pyruv_carbox pyruvat 28.9 1.6E+02 0.0034 34.6 7.4 64 48-132 610-673 (1143)
258 TIGR02660 nifV_homocitr homoci 28.2 68 0.0015 32.3 4.0 60 71-132 75-134 (365)
259 PF13199 Glyco_hydro_66: Glyco 28.0 1.4E+02 0.003 32.1 6.2 64 66-131 116-190 (559)
260 PF13380 CoA_binding_2: CoA bi 27.5 1.6E+02 0.0035 24.2 5.4 42 67-128 65-106 (116)
261 PRK13210 putative L-xylulose 5 27.4 5.3E+02 0.011 24.3 12.4 58 68-130 52-113 (284)
262 PRK14842 undecaprenyl pyrophos 27.3 77 0.0017 30.0 3.8 59 68-129 39-100 (241)
263 PRK12858 tagatose 1,6-diphosph 27.1 1E+02 0.0023 30.7 4.9 56 71-132 109-164 (340)
264 smart00518 AP2Ec AP endonuclea 27.0 3.7E+02 0.0081 25.2 8.7 53 69-129 11-63 (273)
265 PF09370 TIM-br_sig_trns: TIM- 27.0 1.2E+02 0.0026 29.1 5.1 27 213-239 194-220 (268)
266 cd02876 GH18_SI-CLP Stabilin-1 26.8 6E+02 0.013 24.7 11.6 67 161-238 86-154 (318)
267 TIGR01108 oadA oxaloacetate de 26.7 1.6E+02 0.0035 31.7 6.6 48 68-131 91-138 (582)
268 COG0041 PurE Phosphoribosylcar 25.7 2.6E+02 0.0056 24.6 6.4 50 66-131 14-64 (162)
269 PRK09282 pyruvate carboxylase 25.7 1.6E+02 0.0034 31.9 6.3 48 68-131 96-143 (592)
270 PRK14841 undecaprenyl pyrophos 25.7 83 0.0018 29.6 3.7 59 68-129 34-95 (233)
271 PRK12399 tagatose 1,6-diphosph 25.6 1.1E+02 0.0024 30.2 4.6 55 74-134 111-165 (324)
272 PRK11858 aksA trans-homoaconit 25.5 90 0.002 31.6 4.3 60 71-132 78-137 (378)
273 PRK09810 entericidin A; Provis 25.5 49 0.0011 22.1 1.5 13 11-23 10-22 (41)
274 PLN02746 hydroxymethylglutaryl 25.5 90 0.0019 31.3 4.1 61 70-132 123-183 (347)
275 COG1934 Uncharacterized protei 25.4 1.4E+02 0.0031 26.7 5.0 22 30-51 30-53 (173)
276 PLN03033 2-dehydro-3-deoxyphos 25.1 2.8E+02 0.0061 26.9 7.1 77 45-134 16-97 (290)
277 COG4669 EscJ Type III secretor 24.8 55 0.0012 30.7 2.3 50 1-87 1-50 (246)
278 COG3684 LacD Tagatose-1,6-bisp 24.8 1.6E+02 0.0034 28.2 5.3 53 75-134 118-170 (306)
279 cd02879 GH18_plant_chitinase_c 24.7 6.4E+02 0.014 24.4 11.2 55 162-229 87-141 (299)
280 TIGR03128 RuMP_HxlA 3-hexulose 24.7 2.1E+02 0.0046 25.8 6.3 44 73-133 68-111 (206)
281 TIGR01307 pgm_bpd_ind 2,3-bisp 24.5 2.5E+02 0.0054 29.7 7.3 58 67-132 123-180 (501)
282 TIGR00419 tim triosephosphate 24.3 2E+02 0.0043 26.5 5.9 44 74-131 74-117 (205)
283 PF00704 Glyco_hydro_18: Glyco 24.1 3.1E+02 0.0067 26.6 7.8 101 109-239 60-164 (343)
284 PRK13962 bifunctional phosphog 24.0 2.8E+02 0.0061 30.3 7.8 45 74-132 474-522 (645)
285 PRK15261 fimbrial protein SteA 24.0 70 0.0015 29.1 2.9 37 1-37 1-37 (195)
286 PLN02684 Probable galactinol-- 23.9 5.1E+02 0.011 28.8 9.6 74 66-141 217-315 (750)
287 PRK14839 undecaprenyl pyrophos 23.8 1E+02 0.0022 29.2 3.9 58 68-129 40-101 (239)
288 PRK14831 undecaprenyl pyrophos 23.5 96 0.0021 29.5 3.7 62 68-129 51-112 (249)
289 PF12984 DUF3868: Domain of un 23.3 1.1E+02 0.0024 25.3 3.7 18 30-47 27-44 (115)
290 KOG4063 Major epididymal secre 23.3 1.2E+02 0.0026 26.5 3.8 19 1-19 1-19 (158)
291 KOG4115 Dynein-associated prot 23.2 3E+02 0.0066 22.1 5.8 56 173-236 3-67 (97)
292 PRK14041 oxaloacetate decarbox 23.1 2.1E+02 0.0046 29.9 6.5 48 68-131 95-142 (467)
293 PRK13125 trpA tryptophan synth 22.7 2.1E+02 0.0045 26.9 5.9 50 69-133 89-138 (244)
294 cd07941 DRE_TIM_LeuA3 Desulfob 22.7 1.2E+02 0.0026 29.2 4.3 58 72-132 82-140 (273)
295 PRK00366 ispG 4-hydroxy-3-meth 22.4 3.1E+02 0.0067 27.5 7.1 67 63-131 37-137 (360)
296 PRK14837 undecaprenyl pyrophos 22.3 1.1E+02 0.0024 28.7 3.8 58 68-129 37-98 (230)
297 TIGR01232 lacD tagatose 1,6-di 22.3 1.5E+02 0.0032 29.3 4.8 55 74-134 112-166 (325)
298 PRK04161 tagatose 1,6-diphosph 22.1 1.5E+02 0.0032 29.4 4.8 56 73-134 112-167 (329)
299 PRK14840 undecaprenyl pyrophos 22.1 1.1E+02 0.0024 29.1 3.9 59 68-129 53-114 (250)
300 cd03174 DRE_TIM_metallolyase D 22.0 1.4E+02 0.0031 28.0 4.7 61 71-133 77-137 (265)
301 cd02878 GH18_zymocin_alpha Zym 22.0 7.8E+02 0.017 24.3 10.3 65 164-239 88-157 (345)
302 TIGR00055 uppS undecaprenyl di 21.9 1.2E+02 0.0025 28.5 3.9 58 68-129 30-91 (226)
303 TIGR00612 ispG_gcpE 1-hydroxy- 21.7 3E+02 0.0064 27.5 6.7 67 63-131 29-128 (346)
304 PRK07379 coproporphyrinogen II 21.6 1.9E+02 0.0042 29.4 5.9 50 70-132 114-173 (400)
305 cd07938 DRE_TIM_HMGL 3-hydroxy 21.6 1.3E+02 0.0028 28.9 4.3 60 71-133 76-136 (274)
306 PRK10240 undecaprenyl pyrophos 21.5 1.2E+02 0.0026 28.4 4.0 58 68-129 24-85 (229)
307 PRK12457 2-dehydro-3-deoxyphos 20.9 7.7E+02 0.017 23.9 9.6 63 68-134 30-97 (281)
308 PF02495 7kD_coat: 7kD viral c 20.9 1.9E+02 0.0041 20.7 4.1 10 42-51 31-40 (59)
309 cd00475 CIS_IPPS Cis (Z)-Isopr 20.6 1.3E+02 0.0027 28.2 3.8 60 67-129 30-92 (221)
310 COG0848 ExbD Biopolymer transp 20.5 5.4E+02 0.012 21.9 8.2 49 66-128 80-128 (137)
311 TIGR02171 Fb_sc_TIGR02171 Fibr 20.4 1.2E+03 0.026 26.7 11.7 25 108-132 805-829 (912)
312 PRK05904 coproporphyrinogen II 20.4 1.4E+02 0.003 29.9 4.4 58 70-132 102-161 (353)
313 PF12071 DUF3551: Protein of u 20.1 1.6E+02 0.0035 22.9 3.7 11 1-11 1-11 (82)
314 COG1809 (2R)-phospho-3-sulfola 20.1 2.4E+02 0.0053 26.4 5.4 50 68-131 90-139 (258)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.97 E-value=9.4e-30 Score=246.14 Aligned_cols=264 Identities=25% Similarity=0.429 Sum_probs=186.3
Q ss_pred CCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCc-cCCC-CCChhhhhhHHHHHHHH
Q 013811 43 NGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQ-RSPG-SYNEQMFKGLDFVIAEA 120 (436)
Q Consensus 43 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq-~~pg-~~~~~~l~~lD~~i~~a 120 (436)
+|+++.+.|+|.+|... ...+++|+.|+++|+|+||+++. |..++ +.|+ .++++.++.||++|++|
T Consensus 4 ~G~~v~~~G~n~~w~~~--------~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~~~~~~~~~ld~~v~~a 71 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP--------SITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYNYDETYLARLDRIVDAA 71 (281)
T ss_dssp TSEBEEEEEEEETTSGG--------GSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTSBTHHHHHHHHHHHHHH
T ss_pred CCCeEEeeeeecccCCC--------CCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCccccHHHHHHHHHHHHHH
Confidence 79999999999986643 26889999999999999999775 33444 4555 48999999999999999
Q ss_pred HHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE
Q 013811 121 RKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWE 200 (436)
Q Consensus 121 ~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~we 200 (436)
+++||+|||++|+.. .|.. ....+...+..++.|.++++.+++| |+++|.|++||
T Consensus 72 ~~~gi~vild~h~~~----------~w~~-------~~~~~~~~~~~~~~~~~~~~~la~~--------y~~~~~v~~~e 126 (281)
T PF00150_consen 72 QAYGIYVILDLHNAP----------GWAN-------GGDGYGNNDTAQAWFKSFWRALAKR--------YKDNPPVVGWE 126 (281)
T ss_dssp HHTT-EEEEEEEEST----------TCSS-------STSTTTTHHHHHHHHHHHHHHHHHH--------HTTTTTTEEEE
T ss_pred HhCCCeEEEEeccCc----------cccc-------cccccccchhhHHHHHhhhhhhccc--------cCCCCcEEEEE
Confidence 999999999999851 1100 0112233455778889999999999 99999999999
Q ss_pred eecCCCCCCCC------ChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhh-cCCCCc
Q 013811 201 LMNEPRCTSDP------SGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVAN-NLIPGI 273 (436)
Q Consensus 201 L~NEp~~~~~~------~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~-~~~~~i 273 (436)
|+|||...... ..+.+.+|+++++++||+.||+++|++++.++..... ...... ......
T Consensus 127 l~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~-------------~~~~~~P~~~~~~ 193 (281)
T PF00150_consen 127 LWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGADPD-------------GAAADNPNDADNN 193 (281)
T ss_dssp SSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHTBHH-------------HHHHHSTTTTTTS
T ss_pred ecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccccccc-------------hhhhcCcccccCc
Confidence 99999986432 2367899999999999999999999998754321100 000011 113567
Q ss_pred ceEEeecCCCCCCC-C-C--ChhHhHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 013811 274 DFATVHSYPDQWLS-S-S--NDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYS 349 (436)
Q Consensus 274 D~~s~H~Y~~~w~~-~-~--~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g~~~~~r~~~~~~~~~~i~~ 349 (436)
+++++|.|+. +.. . . ...........++..+...+.+ .++||+|+|||....... ...++...+++.+.+
T Consensus 194 ~~~~~H~Y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~pv~~gE~G~~~~~~~----~~~~~~~~~~~~~~~ 267 (281)
T PF00150_consen 194 DVYSFHFYDP-YDFSDQWNPGNWGDASALESSFRAALNWAKK-NGKPVVVGEFGWSNNDGN----GSTDYADAWLDYLEQ 267 (281)
T ss_dssp EEEEEEEETT-TCHHTTTSTCSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEESSTTTSC----HHHHHHHHHHHHHHH
T ss_pred eeEEeeEeCC-CCcCCccccccchhhhHHHHHHHHHHHHHHH-cCCeEEEeCcCCcCCCCC----cCHHHHHHHHHHHHH
Confidence 8999999985 321 1 0 0111233445566666666665 799999999999844321 223333334433322
Q ss_pred HhhcCCCccceeecccccC
Q 013811 350 SAKRGGAAAGGLFWQLLTE 368 (436)
Q Consensus 350 ~~~~~~~~~G~~~W~~~~~ 368 (436)
...|+++|+|.++
T Consensus 268 ------~~~g~~~W~~~~~ 280 (281)
T PF00150_consen 268 ------NGIGWIYWSWKPN 280 (281)
T ss_dssp ------TTCEEEECEESSS
T ss_pred ------CCCeEEEEecCCC
Confidence 3679999999875
No 2
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9.3e-31 Score=255.72 Aligned_cols=292 Identities=22% Similarity=0.311 Sum_probs=214.1
Q ss_pred EEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhh-hhhHHHHHH
Q 013811 40 FLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQM-FKGLDFVIA 118 (436)
Q Consensus 40 f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~-l~~lD~~i~ 118 (436)
|.++++.+.+.+.+-+|..+. ...++++|+.++.+|++++|+|.. ||.. .....|.-+... +.+++.+++
T Consensus 4 F~Lg~n~wprIanikmw~~~~------~~ei~~dle~a~~vg~k~lR~fiL-DgEd--c~d~~G~~na~s~~~y~~~fla 74 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIG------NREIKADLEPAGFVGVKDLRLFIL-DGED--CRDKEGYRNAGSNVWYAAWFLA 74 (587)
T ss_pred EEeccccchhhhhhhHHHHhh------hhhhhcccccccCccceeEEEEEe-cCcc--hhhhhceecccccHHHHHHHhh
Confidence 555666666666555565542 257899999999999999999954 4321 122334444443 899999999
Q ss_pred HHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEE
Q 013811 119 EARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMA 198 (436)
Q Consensus 119 ~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~ 198 (436)
.|..++|+|+++|.+.|.++||++++..|++. +++++++-|++.+.-+++|++.+|+. ||.+|+|++
T Consensus 75 ~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~-----~~pdn~iyD~k~~~~~kkyvedlVk~--------yk~~ptI~g 141 (587)
T COG3934 75 PAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE-----QSPDNVIYDPKFRGPGKKYVEDLVKP--------YKLDPTIAG 141 (587)
T ss_pred hcccCcceEEEEEeecccccCcceeEeecCCC-----CCccccccchhhcccHHHHHHHHhhh--------hccChHHHH
Confidence 99999999999999999999999999999743 25688899999999999999999998 999999999
Q ss_pred EEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCCCccc-CCCCCccccCCCCCcccchhhhhcCCCCcceEE
Q 013811 199 WELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFY-GQSTPQRKRVNPNLDIGTDFVANNLIPGIDFAT 277 (436)
Q Consensus 199 weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~-~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s 277 (436)
|.+.|||.+....+..++..|..+|.++||.+||+|+|++|.+++. ..- -| ......+|+.+
T Consensus 142 w~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp~~~~-------~p----------yN~r~~vDya~ 204 (587)
T COG3934 142 WALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASPWPQY-------AP----------YNARFYVDYAA 204 (587)
T ss_pred HHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCccccc-------CC----------cccceeecccc
Confidence 9999999987766788999999999999999999999999997652 111 11 12234789999
Q ss_pred eecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHhcC-CcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCC
Q 013811 278 VHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILR-KPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRGGA 356 (436)
Q Consensus 278 ~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~-kPv~i~EfG~~~~~~g~~~~~r~~~~~~~~~~i~~~~~~~~~ 356 (436)
.|.|| .|.... .......|...+++..+. .+ +||+++|||++...+.. +..-+..+....++. +
T Consensus 205 ~hLY~-hyd~sl----~~r~s~~yg~~~l~i~~~-~g~~pV~leefGfsta~g~e----~s~ayfiw~~lal~~-----g 269 (587)
T COG3934 205 NHLYR-HYDTSL----VSRVSTVYGKPYLDIPTI-MGWQPVNLEEFGFSTAFGQE----NSPAYFIWIRLALDT-----G 269 (587)
T ss_pred chhhh-hccCCh----hheeeeeecchhhccchh-cccceeeccccCCccccccc----ccchhhhhhhhHHhh-----c
Confidence 99998 454321 112223345556666665 66 99999999999875321 111122222222332 5
Q ss_pred ccceeecccccCCC------CCCC---CCceEEeCCCc
Q 013811 357 AAGGLFWQLLTEGM------DAFR---DGYEIVLSQSP 385 (436)
Q Consensus 357 ~~G~~~W~~~~~g~------~~~~---dg~~i~~~~d~ 385 (436)
.-|+++||+.+... ..|. .+|+|+-.+.+
T Consensus 270 gdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIradgp 307 (587)
T COG3934 270 GDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADGP 307 (587)
T ss_pred CCceEEEEecCCccCCCCCCCccccccceeeeecCCCc
Confidence 67999999998652 1242 47888877554
No 3
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.95 E-value=9.7e-26 Score=240.77 Aligned_cols=290 Identities=16% Similarity=0.221 Sum_probs=191.9
Q ss_pred CCCC--EEeeCCeEEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCC
Q 013811 29 GDGF--IRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYN 106 (436)
Q Consensus 29 ~~~f--v~v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~ 106 (436)
..|| |+++++.|.+||+|++++|+|.|........+.+.+.+.++|+.||++|+|+||+... | .+
T Consensus 272 ~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~-----p--------~~ 338 (604)
T PRK10150 272 RFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHY-----P--------YS 338 (604)
T ss_pred eeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccC-----C--------CC
Confidence 4576 7888999999999999999998765543323345678899999999999999999322 1 12
Q ss_pred hhhhhhHHHHHHHHHHcCCEEEEeccc--CCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhcccc
Q 013811 107 EQMFKGLDFVIAEARKYGIKLILSLAN--NYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNT 184 (436)
Q Consensus 107 ~~~l~~lD~~i~~a~~~Gi~vil~l~~--~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~ 184 (436)
.+++++|.++||+|+-.+.. ...+.+.. +. +. ............+|+..+.+.+.++++|.|
T Consensus 339 -------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~--~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r--- 402 (604)
T PRK10150 339 -------EEMLDLADRHGIVVIDETPAVGLNLSFGAG--LE-AG---NKPKETYSEEAVNGETQQAHLQAIRELIAR--- 402 (604)
T ss_pred -------HHHHHHHHhcCcEEEEeccccccccccccc--cc-cc---ccccccccccccchhHHHHHHHHHHHHHHh---
Confidence 26789999999999877642 11111100 00 00 000000011123577888999999999999
Q ss_pred ccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchh
Q 013811 185 FTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDF 264 (436)
Q Consensus 185 ~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df 264 (436)
++|||+|++|.++||+... .+....++++|.+.+|++||+|+|+.+...+... +
T Consensus 403 -----~~NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~~~--------~--------- 456 (604)
T PRK10150 403 -----DKNHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVNVMFATP--------D--------- 456 (604)
T ss_pred -----ccCCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEecccCCc--------c---------
Confidence 9999999999999998753 2356788999999999999999999875321100 0
Q ss_pred hhhcCCCCcceEEeecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCC-------CCCCChHHHH
Q 013811 265 VANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRK-------DPGYSTYQRD 337 (436)
Q Consensus 265 ~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~-------~~g~~~~~r~ 337 (436)
.....+.+||+++|.|+.++........ ...++...+....+..+||++++|||..+. ...++++.+.
T Consensus 457 -~~~~~~~~Dv~~~N~Y~~wy~~~~~~~~----~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~ 531 (604)
T PRK10150 457 -TDTVSDLVDVLCLNRYYGWYVDSGDLET----AEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWSEEYQC 531 (604)
T ss_pred -cccccCcccEEEEcccceecCCCCCHHH----HHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCCHHHHH
Confidence 0112356899999999874322112211 222333333222222589999999996542 1235678888
Q ss_pred HHHHHHHHHHHHHhhcCCCccceeecccccCCC----CCC-CCCceEEeC
Q 013811 338 VMFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGM----DAF-RDGYEIVLS 382 (436)
Q Consensus 338 ~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~----~~~-~dg~~i~~~ 382 (436)
.+++..+..+.+ .+.++|.++|++.|... ..+ ++..+++..
T Consensus 532 ~~~~~~~~~~~~----~p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~ 577 (604)
T PRK10150 532 AFLDMYHRVFDR----VPAVVGEQVWNFADFATSQGILRVGGNKKGIFTR 577 (604)
T ss_pred HHHHHHHHHHhc----CCceEEEEEEeeeccCCCCCCcccCCCcceeEcC
Confidence 888877665433 35899999999999422 112 245677765
No 4
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.90 E-value=2.2e-22 Score=196.98 Aligned_cols=158 Identities=17% Similarity=0.291 Sum_probs=113.5
Q ss_pred EEeeCCeEEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhh
Q 013811 33 IRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKG 112 (436)
Q Consensus 33 v~v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~ 112 (436)
|+|++++|.|||||++++|+|.|........+.+.+.++++|..||++|+|+||+.... .+
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p-------------~~------ 61 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYP-------------PS------ 61 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS---------------S------
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEccccc-------------Cc------
Confidence 68999999999999999999976433322223456899999999999999999994431 12
Q ss_pred HHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCC
Q 013811 113 LDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKD 192 (436)
Q Consensus 113 lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~ 192 (436)
.++++.|.++||.|+..+... .+|. |. ..+ .......++...+.+.+.++++|.| ++|
T Consensus 62 -~~~~~~cD~~GilV~~e~~~~--~~~~------~~-~~~----~~~~~~~~~~~~~~~~~~~~~~v~~--------~~N 119 (298)
T PF02836_consen 62 -PRFYDLCDELGILVWQEIPLE--GHGS------WQ-DFG----NCNYDADDPEFRENAEQELREMVRR--------DRN 119 (298)
T ss_dssp -HHHHHHHHHHT-EEEEE-S-B--SCTS------SS-STS----CTSCTTTSGGHHHHHHHHHHHHHHH--------HTT
T ss_pred -HHHHHHHhhcCCEEEEecccc--ccCc------cc-cCC----ccccCCCCHHHHHHHHHHHHHHHHc--------CcC
Confidence 378899999999999887431 0010 00 000 0012345788999999999999999 999
Q ss_pred CCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCC
Q 013811 193 DPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGL 240 (436)
Q Consensus 193 ~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~ 240 (436)
||+|++|.++||+ ....+++++.+.+|++||+++|+..+
T Consensus 120 HPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 120 HPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp -TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred cCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeecc
Confidence 9999999999999 35778899999999999999998765
No 5
>TIGR03356 BGL beta-galactosidase.
Probab=99.86 E-value=2.9e-20 Score=189.75 Aligned_cols=282 Identities=17% Similarity=0.241 Sum_probs=189.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC-CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS-PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYV 145 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~-pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 145 (436)
-+.+++||+.|+++|+|++|+-+ .|++++|. +|.+|++.++.+|.+|++|.++||.+|++|+++ + .|
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si----~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hf-d-------~P 120 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSI----AWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHW-D-------LP 120 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEccc----chhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccC-C-------cc
Confidence 47899999999999999999843 48889887 788999999999999999999999999999864 2 35
Q ss_pred hHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------C----Ch
Q 013811 146 NWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD--------P----SG 213 (436)
Q Consensus 146 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~--------~----~~ 213 (436)
.|....|. |.+++..+.|.+|++.+++| |++. |-.|++.|||+.... + +.
T Consensus 121 ~~l~~~gG--------w~~~~~~~~f~~ya~~~~~~--------~~d~--v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~ 182 (427)
T TIGR03356 121 QALEDRGG--------WLNRDTAEWFAEYAAVVAER--------LGDR--VKHWITLNEPWCSAFLGYGLGVHAPGLRDL 182 (427)
T ss_pred HHHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hCCc--CCEEEEecCcceecccchhhccCCCCCccH
Confidence 56543332 67899999999999999999 9995 557999999985421 1 11
Q ss_pred H-HHHH------HHHHHHHHhhccCCCCEEEeCCC--cccCCC-CCcc-------------ccCCCCCcccchhh----h
Q 013811 214 R-TIQA------WITEMASYVKSIDRNHLLEAGLE--GFYGQS-TPQR-------------KRVNPNLDIGTDFV----A 266 (436)
Q Consensus 214 ~-~~~~------w~~~~~~~Ir~~Dp~~lV~vG~~--g~~~~~-~~~~-------------~~~np~~~~g~df~----~ 266 (436)
. .++. -..++++.+|+..|+..|.+-.. .++..+ .+.. +..+|.+ .| ++. .
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~-~G-~yP~~~~~ 260 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLL-KG-RYPEDLLE 260 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHh-CC-CCCHHHHH
Confidence 1 1111 12445677888888766654222 222221 1100 0001100 00 000 0
Q ss_pred -------------hcCCCCcceEEeecCCCCCCCC------------CChh-H--hHHHHHHHHHHHHHHHHHhcCC-cE
Q 013811 267 -------------NNLIPGIDFATVHSYPDQWLSS------------SNDR-D--QLSFLNNWLDTHIQDAEHILRK-PI 317 (436)
Q Consensus 267 -------------~~~~~~iD~~s~H~Y~~~w~~~------------~~~~-~--~~~~~~~~i~~~~~~a~~~~~k-Pv 317 (436)
......+||+++++|....... ...+ . .......-|+..+....+.+++ ||
T Consensus 261 ~l~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi 340 (427)
T TIGR03356 261 YLGDAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPI 340 (427)
T ss_pred HhccCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCE
Confidence 0113567999999997432110 0000 0 0111233455556555555787 79
Q ss_pred EEEecCCCCCC---CC-CChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccCCCCCCCCC----ceEEeC
Q 013811 318 LLAEFGKSRKD---PG-YSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGMDAFRDG----YEIVLS 382 (436)
Q Consensus 318 ~i~EfG~~~~~---~g-~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~dg----~~i~~~ 382 (436)
+|+|.|+...+ .| ..++.|..|++..+..+.+++.+|..+.|++.|++.|+- +|.+| |++++.
T Consensus 341 ~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~--ew~~gy~~rfGl~~V 411 (427)
T TIGR03356 341 YITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNF--EWAEGYSKRFGLVHV 411 (427)
T ss_pred EEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeccccccc--chhcccccccceEEE
Confidence 99999997432 11 346789999999999999999999999999999999984 46555 555554
No 6
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.86 E-value=3.5e-20 Score=206.75 Aligned_cols=234 Identities=20% Similarity=0.277 Sum_probs=159.0
Q ss_pred CCCCC--EEeeCCeEEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCC
Q 013811 28 AGDGF--IRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSY 105 (436)
Q Consensus 28 ~~~~f--v~v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~ 105 (436)
...|| |+++++.|.+||+|++++|+|.|........+.+++.++++|+.||++|+|+||++....
T Consensus 313 ~~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~------------- 379 (1021)
T PRK10340 313 QRVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPN------------- 379 (1021)
T ss_pred eeeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCC-------------
Confidence 34576 788899999999999999999875443322234568899999999999999999954211
Q ss_pred ChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccc
Q 013811 106 NEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTF 185 (436)
Q Consensus 106 ~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~ 185 (436)
+ ..++++|.++||+|+-... .+ . .|... .+ ....+..+|...+.+.+.++.+|.|
T Consensus 380 ~-------~~fydlcDe~GllV~dE~~-~e-~-~g~~~-------~~----~~~~~~~~p~~~~~~~~~~~~mV~R---- 434 (1021)
T PRK10340 380 D-------PRFYELCDIYGLFVMAETD-VE-S-HGFAN-------VG----DISRITDDPQWEKVYVDRIVRHIHA---- 434 (1021)
T ss_pred C-------HHHHHHHHHCCCEEEECCc-cc-c-cCccc-------cc----ccccccCCHHHHHHHHHHHHHHHHh----
Confidence 1 2678999999999987652 11 0 01000 00 0012245677888899999999999
Q ss_pred cccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhh
Q 013811 186 TGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFV 265 (436)
Q Consensus 186 tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~ 265 (436)
++|||+|++|.++||.... .. +++|++.+|++||++||+.....
T Consensus 435 ----drNHPSIi~WslGNE~~~g-----~~----~~~~~~~~k~~DptR~v~~~~~~----------------------- 478 (1021)
T PRK10340 435 ----QKNHPSIIIWSLGNESGYG-----CN----IRAMYHAAKALDDTRLVHYEEDR----------------------- 478 (1021)
T ss_pred ----CCCCCEEEEEECccCcccc-----HH----HHHHHHHHHHhCCCceEEeCCCc-----------------------
Confidence 9999999999999998642 12 37899999999999999754210
Q ss_pred hhcCCCCcceEEeecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCC-CCCChHHHHHHHHHHH
Q 013811 266 ANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKD-PGYSTYQRDVMFNTVY 344 (436)
Q Consensus 266 ~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~-~g~~~~~r~~~~~~~~ 344 (436)
.....|+++. +|+.. . .+..+ .....+||++++|||..... +| ...+|..
T Consensus 479 ---~~~~~Dv~~~-~Y~~~-----------~----~~~~~---~~~~~~kP~i~~Ey~hamgn~~g----~~~~yw~--- 529 (1021)
T PRK10340 479 ---DAEVVDVIST-MYTRV-----------E----LMNEF---GEYPHPKPRILCEYAHAMGNGPG----GLTEYQN--- 529 (1021)
T ss_pred ---Cccccceecc-ccCCH-----------H----HHHHH---HhCCCCCcEEEEchHhccCCCCC----CHHHHHH---
Confidence 0135788885 35421 1 12221 11113799999999965432 22 1233332
Q ss_pred HHHHHHhhcCCCccceeecccccCC
Q 013811 345 YKIYSSAKRGGAAAGGLFWQLLTEG 369 (436)
Q Consensus 345 ~~i~~~~~~~~~~~G~~~W~~~~~g 369 (436)
.+.+ .+.+.|.++|.|.|.+
T Consensus 530 -~~~~----~p~l~GgfiW~~~D~~ 549 (1021)
T PRK10340 530 -VFYK----HDCIQGHYVWEWCDHG 549 (1021)
T ss_pred -HHHh----CCceeEEeeeecCccc
Confidence 2222 3578999999999974
No 7
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.85 E-value=7.8e-20 Score=203.61 Aligned_cols=244 Identities=14% Similarity=0.212 Sum_probs=158.7
Q ss_pred CCCC--EEeeCCeEEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCC
Q 013811 29 GDGF--IRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYN 106 (436)
Q Consensus 29 ~~~f--v~v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~ 106 (436)
..|| |++++++|.+||+|++++|+|.|..........+++.++++|+.||++|+|+||+.... .+
T Consensus 330 ~~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP-------------~~ 396 (1027)
T PRK09525 330 DVGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYP-------------NH 396 (1027)
T ss_pred eEEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCC-------------CC
Confidence 4566 78889999999999999999987543332223467899999999999999999994321 11
Q ss_pred hhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhcccccc
Q 013811 107 EQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFT 186 (436)
Q Consensus 107 ~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~t 186 (436)
.++.++|.++||+|+-...- . .. |+ ++ ......+|...+.+.+.++++|.|
T Consensus 397 -------p~fydlcDe~GilV~dE~~~-e-~h-g~--~~------------~~~~~~dp~~~~~~~~~~~~mV~R----- 447 (1027)
T PRK09525 397 -------PLWYELCDRYGLYVVDEANI-E-TH-GM--VP------------MNRLSDDPRWLPAMSERVTRMVQR----- 447 (1027)
T ss_pred -------HHHHHHHHHcCCEEEEecCc-c-cc-CC--cc------------ccCCCCCHHHHHHHHHHHHHHHHh-----
Confidence 26789999999999876421 1 00 11 00 012345788889999999999999
Q ss_pred ccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhh
Q 013811 187 GIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVA 266 (436)
Q Consensus 187 g~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~ 266 (436)
++|||+|++|.++||+.... . ..+|++.+|++||+++|+..+.+. .
T Consensus 448 ---drNHPSIi~WSlgNE~~~g~-----~----~~~l~~~~k~~DptRpV~y~~~~~-~--------------------- 493 (1027)
T PRK09525 448 ---DRNHPSIIIWSLGNESGHGA-----N----HDALYRWIKSNDPSRPVQYEGGGA-D--------------------- 493 (1027)
T ss_pred ---CCCCCEEEEEeCccCCCcCh-----h----HHHHHHHHHhhCCCCcEEECCCCC-C---------------------
Confidence 99999999999999986531 1 468899999999999998643110 0
Q ss_pred hcCCCCcceEEeecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHH
Q 013811 267 NNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYK 346 (436)
Q Consensus 267 ~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g~~~~~r~~~~~~~~~~ 346 (436)
....|+++. +|+...............+.+|+.. . ..+||++++|||-.... +...-.+| ++.
T Consensus 494 ---~~~~Dv~~~-my~~~~~~~~~~~~~~~~~~~~~~~----~--~~~kP~i~cEY~Hamgn---~~g~l~~y----w~~ 556 (1027)
T PRK09525 494 ---TAATDIICP-MYARVDEDQPFPAVPKWSIKKWISL----P--GETRPLILCEYAHAMGN---SLGGFAKY----WQA 556 (1027)
T ss_pred ---CCccccccC-CCCCccccccccccchHHHHHHHhc----C--CCCCCEEEEechhcccC---cCccHHHH----HHH
Confidence 123455553 3432111000000000112223221 0 13699999999965432 21222233 333
Q ss_pred HHHHhhcCCCccceeecccccCC
Q 013811 347 IYSSAKRGGAAAGGLFWQLLTEG 369 (436)
Q Consensus 347 i~~~~~~~~~~~G~~~W~~~~~g 369 (436)
+. +...+.|.++|.|.|+|
T Consensus 557 ~~----~~~~~~GgfIW~w~Dqg 575 (1027)
T PRK09525 557 FR----QYPRLQGGFIWDWVDQG 575 (1027)
T ss_pred Hh----cCCCeeEEeeEeccCcc
Confidence 32 23578999999999976
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.85 E-value=1.9e-20 Score=188.99 Aligned_cols=284 Identities=21% Similarity=0.324 Sum_probs=157.4
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhh
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYV 145 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 145 (436)
+++.+++||+.|+++|+|+||+..+ .|..+||++|.|| |..||++|+.|+++||+|+|.+... ..|
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lEP~eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~--------~~P 73 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLEPEEGQYD---FSWLDRVLDLAAKHGIKVILGTPTA--------APP 73 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-SBTTB------HHHHHHHHHHHCTT-EEEEEECTT--------TS-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe---chhhccCCCCeee---cHHHHHHHHHHHhccCeEEEEeccc--------ccc
Confidence 4578999999999999999998655 3667899999999 8889999999999999999987532 235
Q ss_pred hHHhhc----------CCCC---CCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC-
Q 013811 146 NWARSQ----------GQFL---TSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDP- 211 (436)
Q Consensus 146 ~W~~~~----------G~~~---~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~- 211 (436)
.|.... |... ......+.+|..++.+.++++.+++| |+++|+|++|+|.|||.+..+.
T Consensus 74 ~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~--------y~~~p~vi~~~i~NE~~~~~~~~ 145 (374)
T PF02449_consen 74 AWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAER--------YGDHPAVIGWQIDNEPGYHRCYS 145 (374)
T ss_dssp HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHH--------HTTTTTEEEEEECCSTTCTS--S
T ss_pred cchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhh--------ccccceEEEEEeccccCcCcCCC
Confidence 565421 1100 01122356789999999999999999 9999999999999999774220
Q ss_pred --------------------------------------------------C-----------hHHHHHHHHHHHHHhhcc
Q 013811 212 --------------------------------------------------S-----------GRTIQAWITEMASYVKSI 230 (436)
Q Consensus 212 --------------------------------------------------~-----------~~~~~~w~~~~~~~Ir~~ 230 (436)
+ .+.+.++++.+++.||+.
T Consensus 146 ~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~ 225 (374)
T PF02449_consen 146 PACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREY 225 (374)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 135666778889999999
Q ss_pred CCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecCCCC-CCCCCChhHhHHHHHHHHHHHHHHH
Q 013811 231 DRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQ-WLSSSNDRDQLSFLNNWLDTHIQDA 309 (436)
Q Consensus 231 Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~-w~~~~~~~~~~~~~~~~i~~~~~~a 309 (436)
+|+++|++...+... .+.|+.. ....+|+++++.||.. +...........+..+.++.
T Consensus 226 ~p~~~vt~n~~~~~~--------------~~~d~~~--~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~----- 284 (374)
T PF02449_consen 226 DPDHPVTTNFMGSWF--------------NGIDYFK--WAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRS----- 284 (374)
T ss_dssp STT-EEE-EE-TT-----------------SS-HHH--HGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHH-----
T ss_pred CCCceEEeCcccccc--------------CcCCHHH--HHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHh-----
Confidence 999999975433200 1123322 2457999999999871 11111111112222222221
Q ss_pred HHhcCCcEEEEecCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccC--CCCCCCCCceEEeCCC-c
Q 013811 310 EHILRKPILLAEFGKSRKDP-GYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTE--GMDAFRDGYEIVLSQS-P 385 (436)
Q Consensus 310 ~~~~~kPv~i~EfG~~~~~~-g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~--g~~~~~dg~~i~~~~d-~ 385 (436)
.+ .+||.++.|.-.....- ......+...++... +.++.. +..|.+||+|... |.+. -.++|+.-++ +
T Consensus 285 ~~-~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~~---~~~~A~--Ga~~i~~~~wr~~~~g~E~--~~~g~~~~dg~~ 356 (374)
T PF02449_consen 285 LA-KGKPFWVMEQQPGPVNWRPYNRPPRPGELRLWS---WQAIAH--GADGILFWQWRQSRFGAEQ--FHGGLVDHDGRE 356 (374)
T ss_dssp HT-TT--EEEEEE--S--SSSSS-----TTHHHHHH---HHHHHT--T-S-EEEC-SB--SSSTTT--TS--SB-TTS--
T ss_pred hc-CCCceEeecCCCCCCCCccCCCCCCCCHHHHHH---HHHHHH--hCCeeEeeeccCCCCCchh--hhcccCCccCCC
Confidence 12 69999999994431110 001111112222222 222222 6779999999764 2222 2356776555 2
Q ss_pred --CHHHHHHHHHHHHHh
Q 013811 386 --STANVITQQAHKLYQ 400 (436)
Q Consensus 386 --~~~~li~~~~~~~~~ 400 (436)
.+..-+.+..++|+.
T Consensus 357 ~~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 357 PTRRYREVAQLGRELKK 373 (374)
T ss_dssp B-HHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhc
Confidence 223344444454443
No 9
>PLN02998 beta-glucosidase
Probab=99.83 E-value=4.6e-19 Score=183.12 Aligned_cols=284 Identities=15% Similarity=0.220 Sum_probs=186.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC-CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS-PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYV 145 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~-pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 145 (436)
.+++++|++.||++|+|+.|+ .. .|++++|. .|.+|++.++.++++|+++.++||..+++|++ |+ .|
T Consensus 81 Yhry~EDi~lmk~lG~~~YRf-SI---sWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-~d-------lP 148 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRF-SI---SWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-FD-------LP 148 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEe-ec---cHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-CC-------CC
Confidence 578999999999999999998 32 48888884 57799999999999999999999999999986 43 35
Q ss_pred hHHhhc-CCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------CChH--
Q 013811 146 NWARSQ-GQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD--------PSGR-- 214 (436)
Q Consensus 146 ~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~--------~~~~-- 214 (436)
.|.... |+ |.+++..+.|.+|++.+++| |+|. |-.|...|||++... +.+.
T Consensus 149 ~~L~~~yGG--------W~n~~~v~~F~~YA~~~~~~--------fgdr--Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 210 (497)
T PLN02998 149 QALEDEYGG--------WLSQEIVRDFTAYADTCFKE--------FGDR--VSHWTTINEVNVFALGGYDQGITPPARCS 210 (497)
T ss_pred HHHHHhhCC--------cCCchHHHHHHHHHHHHHHH--------hcCc--CCEEEEccCcchhhhcchhhcccCCCccc
Confidence 666543 43 78899999999999999999 9995 568999999996531 1110
Q ss_pred ---------------HHHHHH------HHHHHHhhcc---CCCCEEEeCCC--cccCCC-CCcc-------------ccC
Q 013811 215 ---------------TIQAWI------TEMASYVKSI---DRNHLLEAGLE--GFYGQS-TPQR-------------KRV 254 (436)
Q Consensus 215 ---------------~~~~w~------~~~~~~Ir~~---Dp~~lV~vG~~--g~~~~~-~~~~-------------~~~ 254 (436)
.++.-. .++.+.+|+. +++..|.+-.. .++..+ .+.. +..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~ 290 (497)
T PLN02998 211 PPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWIL 290 (497)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhh
Confidence 112221 2345667765 55555543222 222211 0100 000
Q ss_pred CCC----Cc-ccc--------hhh---hhcCCCCcceEEeecCCCCCCCC---C--C--h--------h----------H
Q 013811 255 NPN----LD-IGT--------DFV---ANNLIPGIDFATVHSYPDQWLSS---S--N--D--------R----------D 293 (436)
Q Consensus 255 np~----~~-~g~--------df~---~~~~~~~iD~~s~H~Y~~~w~~~---~--~--~--------~----------~ 293 (436)
.|. |- ... +|. .......+||+++++|....... . . . . .
T Consensus 291 dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (497)
T PLN02998 291 HPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIEN 370 (497)
T ss_pred hHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCC
Confidence 110 00 000 000 01113467999999995432110 0 0 0 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccCCCC
Q 013811 294 QLSFLNNWLDTHIQDAEHILRK-PILLAEFGKSRKD-PGYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGMD 371 (436)
Q Consensus 294 ~~~~~~~~i~~~~~~a~~~~~k-Pv~i~EfG~~~~~-~g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~ 371 (436)
..+...+-|+..+....+.+++ ||+|+|.|+.... ....+..|.+|++..+..+..++.+|..+.|++.|++.|+.
T Consensus 371 ~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~Dnf-- 448 (497)
T PLN02998 371 EYANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVF-- 448 (497)
T ss_pred CCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhh--
Confidence 0111233455555555555787 6999999997542 22456789999999999999999999999999999999984
Q ss_pred CCCCC----ceEEeC
Q 013811 372 AFRDG----YEIVLS 382 (436)
Q Consensus 372 ~~~dg----~~i~~~ 382 (436)
+|.+| |++++.
T Consensus 449 EW~~Gy~~RfGLv~V 463 (497)
T PLN02998 449 ELFGGYERSFGLLYV 463 (497)
T ss_pred chhccccCccceEEE
Confidence 46554 566664
No 10
>PLN02814 beta-glucosidase
Probab=99.82 E-value=4e-18 Score=176.43 Aligned_cols=284 Identities=15% Similarity=0.202 Sum_probs=186.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC-CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS-PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYV 145 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~-pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 145 (436)
.+++++|++.||++|+|+.|+ .. .|++++|. +|.+|+++++.++++|+++.++||..++||++ |+ .|
T Consensus 76 Yhry~EDI~L~k~lG~~ayRf-SI---sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H-~d-------lP 143 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRF-SI---SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH-YD-------LP 143 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEE-ec---cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC-CC-------CC
Confidence 578999999999999999998 32 48888884 67899999999999999999999999999986 43 36
Q ss_pred hHHhhc-CCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------C---C-
Q 013811 146 NWARSQ-GQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD--------P---S- 212 (436)
Q Consensus 146 ~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~--------~---~- 212 (436)
.|.... |+ |.+++..+.|.+|++.++++ |+|. |-.|...|||++... + +
T Consensus 144 ~~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgdr--Vk~WiT~NEP~~~~~~gy~~G~~pg~~~~ 205 (504)
T PLN02814 144 QSLEDEYGG--------WINRKIIEDFTAFADVCFRE--------FGED--VKLWTTINEATIFAIGSYGQGIRYGHCSP 205 (504)
T ss_pred HHHHHhcCC--------cCChhHHHHHHHHHHHHHHH--------hCCc--CCEEEeccccchhhhcccccCcCCCCCCc
Confidence 676653 43 78999999999999999999 9995 668999999985421 0 0
Q ss_pred ------------hHHHHHH------HHHHHHHhhcc---CCCCEEEeCCC--cccCCCC-Cc-------------cccCC
Q 013811 213 ------------GRTIQAW------ITEMASYVKSI---DRNHLLEAGLE--GFYGQST-PQ-------------RKRVN 255 (436)
Q Consensus 213 ------------~~~~~~w------~~~~~~~Ir~~---Dp~~lV~vG~~--g~~~~~~-~~-------------~~~~n 255 (436)
.+.++.- ..++++++|+. .|+-.|.+-.. .++..+. ++ ++..+
T Consensus 206 ~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~d 285 (504)
T PLN02814 206 NKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLK 285 (504)
T ss_pred ccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhH
Confidence 0112221 13345667764 56555543221 1222111 10 00001
Q ss_pred CC----Cc-ccch--------hh---hhcCCCCcceEEeecCCCCCCCC---C--------Ch------------hH---
Q 013811 256 PN----LD-IGTD--------FV---ANNLIPGIDFATVHSYPDQWLSS---S--------ND------------RD--- 293 (436)
Q Consensus 256 p~----~~-~g~d--------f~---~~~~~~~iD~~s~H~Y~~~w~~~---~--------~~------------~~--- 293 (436)
|. |- ...+ |. .......+||+++++|....... . .. +.
T Consensus 286 p~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (504)
T PLN02814 286 PLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSFF 365 (504)
T ss_pred HHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCCC
Confidence 10 00 0000 00 00112567999999995322110 0 00 00
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCC-CChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccCCCC
Q 013811 294 QLSFLNNWLDTHIQDAEHILRK-PILLAEFGKSRKDPG-YSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGMD 371 (436)
Q Consensus 294 ~~~~~~~~i~~~~~~a~~~~~k-Pv~i~EfG~~~~~~g-~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~ 371 (436)
..+...+-|+..+....+.+++ ||+|+|.|+.....+ ..+..|..|+++.+..+.+++.+|..+.|++.|++.|+.
T Consensus 366 gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnf-- 443 (504)
T PLN02814 366 EFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLY-- 443 (504)
T ss_pred CCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhh--
Confidence 0011233355555555444766 799999999754322 456899999999999999999999999999999999984
Q ss_pred CCCCC----ceEEeC
Q 013811 372 AFRDG----YEIVLS 382 (436)
Q Consensus 372 ~~~dg----~~i~~~ 382 (436)
+|.+| |++++.
T Consensus 444 EW~~Gy~~RfGLvyV 458 (504)
T PLN02814 444 ELLGGYTTSFGMYYV 458 (504)
T ss_pred chhccccCccceEEE
Confidence 46554 566654
No 11
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.82 E-value=1.3e-18 Score=179.61 Aligned_cols=284 Identities=17% Similarity=0.227 Sum_probs=189.9
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC--CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS--PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~--pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y 144 (436)
.+++++|++.||++|+|+.|+ .. .|++++|. +|.+|++.++.++++|+++.++||..+++|++ |+ .
T Consensus 72 Yhry~eDi~Lm~~lG~~aYRf-SI---sWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H-~d-------l 139 (478)
T PRK09593 72 YHHYKEDIALFAEMGFKTYRM-SI---AWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH-FD-------C 139 (478)
T ss_pred HHhhHHHHHHHHHcCCCEEEE-ec---chhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc-cC-------C
Confidence 478999999999999999998 33 48889886 55689999999999999999999999999986 43 3
Q ss_pred hhHHhhc-CCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC----------CCh
Q 013811 145 VNWARSQ-GQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD----------PSG 213 (436)
Q Consensus 145 ~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~----------~~~ 213 (436)
|.|.... |+ |.+++..+.|.+|++.+++| |++. |-.|...|||++... +.+
T Consensus 140 P~~L~~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgdr--Vk~WiT~NEP~~~~~~~~~~~g~~~~~g 201 (478)
T PRK09593 140 PMHLIEEYGG--------WRNRKMVGFYERLCRTLFTR--------YKGL--VKYWLTFNEINMILHAPFMGAGLYFEEG 201 (478)
T ss_pred CHHHHhhcCC--------CCChHHHHHHHHHHHHHHHH--------hcCc--CCEEEeecchhhhhcccccccCcccCCC
Confidence 5666543 33 78899999999999999999 9995 568999999985321 111
Q ss_pred -----HHHHHH------HHHHHHHhhccCCCCEEEeCCCc--ccCCC-CCcc------------ccCCCC----Cc-ccc
Q 013811 214 -----RTIQAW------ITEMASYVKSIDRNHLLEAGLEG--FYGQS-TPQR------------KRVNPN----LD-IGT 262 (436)
Q Consensus 214 -----~~~~~w------~~~~~~~Ir~~Dp~~lV~vG~~g--~~~~~-~~~~------------~~~np~----~~-~g~ 262 (436)
..++.- ...+++.+|+..|+-.|.+-... ++..+ .++. +..+|. |- ...
T Consensus 202 ~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~ 281 (478)
T PRK09593 202 ENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAK 281 (478)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHH
Confidence 011222 23446778888887655543222 22211 1100 000110 00 000
Q ss_pred h----------hh----hhcCCCCcceEEeecCCCCCCCC-----C----C----h--h---H---hHHHHHHHHHHHHH
Q 013811 263 D----------FV----ANNLIPGIDFATVHSYPDQWLSS-----S----N----D--R---D---QLSFLNNWLDTHIQ 307 (436)
Q Consensus 263 d----------f~----~~~~~~~iD~~s~H~Y~~~w~~~-----~----~----~--~---~---~~~~~~~~i~~~~~ 307 (436)
+ |. .......+||+++++|-...... . . . + . ..+...+-|+..+.
T Consensus 282 ~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~ 361 (478)
T PRK09593 282 KRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITLN 361 (478)
T ss_pred HHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHHH
Confidence 0 00 00113567999999996432210 0 0 0 0 0 01122344555565
Q ss_pred HHHHhcCCcEEEEecCCCCCC----CC-CChHHHHHHHHHHHHHHHHHhh-cCCCccceeecccccCCCCCCCCC-----
Q 013811 308 DAEHILRKPILLAEFGKSRKD----PG-YSTYQRDVMFNTVYYKIYSSAK-RGGAAAGGLFWQLLTEGMDAFRDG----- 376 (436)
Q Consensus 308 ~a~~~~~kPv~i~EfG~~~~~----~g-~~~~~r~~~~~~~~~~i~~~~~-~~~~~~G~~~W~~~~~g~~~~~dg----- 376 (436)
...+.+++||+|+|.|+...+ .| ..+..|..|++..+..+..++. +|..+.|++.|++.|+. +|..|
T Consensus 362 ~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~--EW~~G~y~~R 439 (478)
T PRK09593 362 TIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLV--SAGTGEMKKR 439 (478)
T ss_pred HHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhh--cccCCCccCe
Confidence 555558899999999997432 11 3467899999999999999985 88899999999999984 47666
Q ss_pred ceEEeC
Q 013811 377 YEIVLS 382 (436)
Q Consensus 377 ~~i~~~ 382 (436)
|+++..
T Consensus 440 fGl~~V 445 (478)
T PRK09593 440 YGFIYV 445 (478)
T ss_pred eceEEE
Confidence 677664
No 12
>PLN02849 beta-glucosidase
Probab=99.82 E-value=4.5e-18 Score=176.02 Aligned_cols=284 Identities=15% Similarity=0.203 Sum_probs=186.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC-CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS-PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYV 145 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~-pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 145 (436)
.+++++|++.||++|+|+.|+ .. .|++++|. .|.+|++.++.++.+|+++.++||..+++|++ |+ .|
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRf-SI---sWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-~d-------lP 145 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRF-SI---SWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-YD-------HP 145 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEE-ec---cHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-CC-------Cc
Confidence 578999999999999999998 33 48888885 46799999999999999999999999999986 43 36
Q ss_pred hHHhhc-CCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------CCh---
Q 013811 146 NWARSQ-GQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD--------PSG--- 213 (436)
Q Consensus 146 ~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~--------~~~--- 213 (436)
.|.... |+ |.|++..+.|.+|++.++++ |+|. |-.|...|||++... +.+
T Consensus 146 ~~L~~~yGG--------W~nr~~v~~F~~YA~~~f~~--------fgDr--Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 207 (503)
T PLN02849 146 QYLEDDYGG--------WINRRIIKDFTAYADVCFRE--------FGNH--VKFWTTINEANIFTIGGYNDGITPPGRCS 207 (503)
T ss_pred HHHHHhcCC--------cCCchHHHHHHHHHHHHHHH--------hcCc--CCEEEEecchhhhhhchhhhccCCCCccc
Confidence 666653 43 78999999999999999999 9995 568999999986421 100
Q ss_pred -------------HHHHHH------HHHHHHHhhcc---CCCCEEEeCCC--cccCCC-CCcc-------------ccCC
Q 013811 214 -------------RTIQAW------ITEMASYVKSI---DRNHLLEAGLE--GFYGQS-TPQR-------------KRVN 255 (436)
Q Consensus 214 -------------~~~~~w------~~~~~~~Ir~~---Dp~~lV~vG~~--g~~~~~-~~~~-------------~~~n 255 (436)
+.++.- ..++++.+|+. .|+..|.+-.. .++..+ .+.. +..+
T Consensus 208 ~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~d 287 (503)
T PLN02849 208 SPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLE 287 (503)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhH
Confidence 111221 13345667765 25555543221 122211 0100 0001
Q ss_pred CC----Cc-ccch--------hh---hhcCCCCcceEEeecCCCCCCCC----------CCh--------h-H---hHHH
Q 013811 256 PN----LD-IGTD--------FV---ANNLIPGIDFATVHSYPDQWLSS----------SND--------R-D---QLSF 297 (436)
Q Consensus 256 p~----~~-~g~d--------f~---~~~~~~~iD~~s~H~Y~~~w~~~----------~~~--------~-~---~~~~ 297 (436)
|. |- ...+ |. .......+||+++++|....... ... . . ..+.
T Consensus 288 p~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i 367 (503)
T PLN02849 288 PLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYAV 367 (503)
T ss_pred HHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCeE
Confidence 10 00 0000 00 01113467999999995322110 000 0 0 0111
Q ss_pred HHHHHHHHHHHHHHhcCC-cEEEEecCCCCCC--C-CCChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccCCCCCC
Q 013811 298 LNNWLDTHIQDAEHILRK-PILLAEFGKSRKD--P-GYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGMDAF 373 (436)
Q Consensus 298 ~~~~i~~~~~~a~~~~~k-Pv~i~EfG~~~~~--~-g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~ 373 (436)
..+-|+..+....+.+++ ||+|+|.|+...+ . ...+..|..|++..+..+.+++.+|..+.|++.|++.|+. +|
T Consensus 368 ~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dnf--EW 445 (503)
T PLN02849 368 APWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLY--EL 445 (503)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhh--ch
Confidence 233355555554445787 7999999987532 1 1356789999999999999999999999999999999984 46
Q ss_pred CCC----ceEEeC
Q 013811 374 RDG----YEIVLS 382 (436)
Q Consensus 374 ~dg----~~i~~~ 382 (436)
..| |+++..
T Consensus 446 ~~Gy~~RfGLi~V 458 (503)
T PLN02849 446 LKGYEFSFGLYSV 458 (503)
T ss_pred hccccCccceEEE
Confidence 544 566664
No 13
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.81 E-value=2.2e-18 Score=177.47 Aligned_cols=282 Identities=16% Similarity=0.208 Sum_probs=189.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC-CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS-PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYV 145 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~-pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 145 (436)
.+++++|++.|+++|+|+.|+ .. .|++++|. +|.+|++.++.++.+|+++.++||..+++|++ |+ .|
T Consensus 52 yhry~eDi~L~~~lG~~~yRf-SI---sWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H-~d-------lP 119 (467)
T TIGR01233 52 YHKYPVDLELAEEYGVNGIRI-SI---AWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH-FD-------TP 119 (467)
T ss_pred hhhHHHHHHHHHHcCCCEEEE-ec---chhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC-CC-------Cc
Confidence 478999999999999999998 32 48888884 57899999999999999999999999999986 43 35
Q ss_pred hHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------CCh----
Q 013811 146 NWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD--------PSG---- 213 (436)
Q Consensus 146 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~--------~~~---- 213 (436)
.|....|+ |.+++..+.|.+|++.++++ |++ |-.|...|||++... +.+
T Consensus 120 ~~L~~~GG--------W~n~~~v~~F~~YA~~~f~~--------fgd---Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~ 180 (467)
T TIGR01233 120 EALHSNGD--------FLNRENIEHFIDYAAFCFEE--------FPE---VNYWTTFNEIGPIGDGQYLVGKFPPGIKYD 180 (467)
T ss_pred HHHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEecchhhhhhccchhcccCCCccch
Confidence 67665453 88999999999999999999 983 678999999986421 111
Q ss_pred --HHHHHH------HHHHHHHhhccCCCCEEEeCCCc--ccCCC--CCc-------------cccCCCCCccc------c
Q 013811 214 --RTIQAW------ITEMASYVKSIDRNHLLEAGLEG--FYGQS--TPQ-------------RKRVNPNLDIG------T 262 (436)
Q Consensus 214 --~~~~~w------~~~~~~~Ir~~Dp~~lV~vG~~g--~~~~~--~~~-------------~~~~np~~~~g------~ 262 (436)
..++.. ..++++.+|+.+|+..|.+-... ++..+ .+. .+-.+|.+ .| .
T Consensus 181 ~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~-~G~Yp~~~~ 259 (467)
T TIGR01233 181 LAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATY-LGHYSDKTM 259 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhh-CCCCCHHHH
Confidence 111222 23456778888887666543322 22221 111 00112210 00 0
Q ss_pred h--------------hh----hhcC--CCCcceEEeecCCCCCCCC----------------------C---------Ch
Q 013811 263 D--------------FV----ANNL--IPGIDFATVHSYPDQWLSS----------------------S---------ND 291 (436)
Q Consensus 263 d--------------f~----~~~~--~~~iD~~s~H~Y~~~w~~~----------------------~---------~~ 291 (436)
. +. .... ...+||+++++|-...... . ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (467)
T TIGR01233 260 EGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYV 339 (467)
T ss_pred HHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCC
Confidence 0 00 0000 2467999999995321100 0 00
Q ss_pred h-H--hHHHHHHHHHHHHHHHHHhcCC--cEEEEecCCCCCC----CCCChHHHHHHHHHHHHHHHHHhhcCCCccceee
Q 013811 292 R-D--QLSFLNNWLDTHIQDAEHILRK--PILLAEFGKSRKD----PGYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLF 362 (436)
Q Consensus 292 ~-~--~~~~~~~~i~~~~~~a~~~~~k--Pv~i~EfG~~~~~----~g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~ 362 (436)
+ . ..+...+-|+..+....+.+++ ||+|+|.|+...+ ....+..|..|++..+..+.+++.+|..+.|++.
T Consensus 340 ~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~ 419 (467)
T TIGR01233 340 PRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFI 419 (467)
T ss_pred CcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 0 0 0112234455556555555776 7999999997432 1134678999999999999999999999999999
Q ss_pred cccccCCCCCCCCC----ceEEeC
Q 013811 363 WQLLTEGMDAFRDG----YEIVLS 382 (436)
Q Consensus 363 W~~~~~g~~~~~dg----~~i~~~ 382 (436)
|++.|+. +|..| |+++..
T Consensus 420 WSl~Dn~--Ew~~Gy~~RfGLv~V 441 (467)
T TIGR01233 420 WSLMDVF--SWSNGYEKRYGLFYV 441 (467)
T ss_pred ccchhhh--chhccccCccceEEE
Confidence 9999984 46544 666664
No 14
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.81 E-value=2.8e-18 Score=176.99 Aligned_cols=284 Identities=16% Similarity=0.170 Sum_probs=188.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC--CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS--PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~--pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y 144 (436)
-+++++|++.||++|+|+.|+ .. .|++++|. .+.+|++.++.++++|+++.++||..+++|++ |+ .
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRf-SI---sWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-~d-------l 133 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRT-SI---AWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-FE-------M 133 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEe-cc---chhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-CC-------C
Confidence 478999999999999999998 32 48888885 45689999999999999999999999999986 43 3
Q ss_pred hhHHhhc-CCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCC------------C-
Q 013811 145 VNWARSQ-GQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTS------------D- 210 (436)
Q Consensus 145 ~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~------------~- 210 (436)
|.|.... |+ |.+++..+.|.+|++.++++ |+|. |-.|...|||++.. .
T Consensus 134 P~~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgdr--Vk~WiT~NEp~~~~~~~~~~~~~~~~g~ 195 (476)
T PRK09589 134 PYHLVTEYGG--------WRNRKLIDFFVRFAEVVFTR--------YKDK--VKYWMTFNEINNQANFSEDFAPFTNSGI 195 (476)
T ss_pred CHHHHHhcCC--------cCChHHHHHHHHHHHHHHHH--------hcCC--CCEEEEecchhhhhccccccCCcccccc
Confidence 5666543 33 78899999999999999999 9995 66899999998531 0
Q ss_pred --CCh----H-HHHHHH------HHHHHHhhccCCCCEEEeCC--CcccCCC-CCc------------cccCCCC----C
Q 013811 211 --PSG----R-TIQAWI------TEMASYVKSIDRNHLLEAGL--EGFYGQS-TPQ------------RKRVNPN----L 258 (436)
Q Consensus 211 --~~~----~-~~~~w~------~~~~~~Ir~~Dp~~lV~vG~--~g~~~~~-~~~------------~~~~np~----~ 258 (436)
+.+ . .++.-. .++++++|+..|+..|.+-. ..++..+ .+. .+...|. |
T Consensus 196 ~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~Y 275 (476)
T PRK09589 196 LYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYY 275 (476)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCCC
Confidence 111 0 112221 33457788888876554322 1222211 110 0001111 0
Q ss_pred c-ccch----------hh----hhcCCCCcceEEeecCCCCCCCC----C------------Ch--hH---hHHHHHHHH
Q 013811 259 D-IGTD----------FV----ANNLIPGIDFATVHSYPDQWLSS----S------------ND--RD---QLSFLNNWL 302 (436)
Q Consensus 259 ~-~g~d----------f~----~~~~~~~iD~~s~H~Y~~~w~~~----~------------~~--~~---~~~~~~~~i 302 (436)
- ...+ |. .......+||+++++|....... . +. +. ..+...+-|
T Consensus 276 P~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl 355 (476)
T PRK09589 276 PQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGL 355 (476)
T ss_pred cHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHH
Confidence 0 0000 00 00113567999999996533210 0 00 00 012223445
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCCC----CC-CChHHHHHHHHHHHHHHHHHh-hcCCCccceeecccccCCCCCCCCC
Q 013811 303 DTHIQDAEHILRKPILLAEFGKSRKD----PG-YSTYQRDVMFNTVYYKIYSSA-KRGGAAAGGLFWQLLTEGMDAFRDG 376 (436)
Q Consensus 303 ~~~~~~a~~~~~kPv~i~EfG~~~~~----~g-~~~~~r~~~~~~~~~~i~~~~-~~~~~~~G~~~W~~~~~g~~~~~dg 376 (436)
+..+....+.+++||+|+|.|+...+ .+ ..+..|..|++..+..+..++ .+|..+.|++.|++.|+. +|.+|
T Consensus 356 ~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~--Ew~~G 433 (476)
T PRK09589 356 RYSLNWFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLV--SAGTG 433 (476)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccc--cccCC
Confidence 55565555558999999999997432 11 346789999999999999998 789999999999999984 46665
Q ss_pred -----ceEEeC
Q 013811 377 -----YEIVLS 382 (436)
Q Consensus 377 -----~~i~~~ 382 (436)
|++++.
T Consensus 434 ~y~~RfGlv~V 444 (476)
T PRK09589 434 EMKKRYGFIYV 444 (476)
T ss_pred ccccceeeEEE
Confidence 566653
No 15
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.81 E-value=2e-18 Score=178.14 Aligned_cols=283 Identities=15% Similarity=0.215 Sum_probs=186.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC-CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS-PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYV 145 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~-pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 145 (436)
-+++++|++.||++|+|+.|+ .. .|++++|. +|.+|++.++.++++|+++.++||..+++|++ |+ .|
T Consensus 53 Y~ry~eDi~L~~~lG~~~yRf-SI---sWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H-~d-------lP 120 (469)
T PRK13511 53 YHRYPEDLKLAEEFGVNGIRI-SI---AWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH-FD-------TP 120 (469)
T ss_pred hhhhHHHHHHHHHhCCCEEEe-ec---cHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC-CC-------Cc
Confidence 478999999999999999998 32 48888884 57799999999999999999999999999986 43 36
Q ss_pred hHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------CCh----
Q 013811 146 NWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD--------PSG---- 213 (436)
Q Consensus 146 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~--------~~~---- 213 (436)
.|....|+ |.+++..+.|.+|++.+++| |+| |-.|...|||++... +.+
T Consensus 121 ~~L~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgd---Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~ 181 (469)
T PRK13511 121 EALHSNGD--------WLNRENIDHFVRYAEFCFEE--------FPE---VKYWTTFNEIGPIGDGQYLVGKFPPGIKYD 181 (469)
T ss_pred HHHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEccchhhhhhcchhhcccCCCCCcc
Confidence 67665443 78999999999999999999 998 668999999986531 111
Q ss_pred --HHHHHH------HHHHHHHhhccCCCCEEEeCCC--cccCCC--CCc-------------cccCCCC----Cc----c
Q 013811 214 --RTIQAW------ITEMASYVKSIDRNHLLEAGLE--GFYGQS--TPQ-------------RKRVNPN----LD----I 260 (436)
Q Consensus 214 --~~~~~w------~~~~~~~Ir~~Dp~~lV~vG~~--g~~~~~--~~~-------------~~~~np~----~~----~ 260 (436)
..++.- ..++++.+|+..++-.|.+-.. .++..+ .++ .+-.+|. |- .
T Consensus 182 ~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~ 261 (469)
T PRK13511 182 LAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETME 261 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHH
Confidence 111222 1344567888777655543222 222211 111 0011111 00 0
Q ss_pred ---------cc--hhhh----hcCC--CCcceEEeecCCCCCCCC------------C-------------------Chh
Q 013811 261 ---------GT--DFVA----NNLI--PGIDFATVHSYPDQWLSS------------S-------------------NDR 292 (436)
Q Consensus 261 ---------g~--df~~----~~~~--~~iD~~s~H~Y~~~w~~~------------~-------------------~~~ 292 (436)
|. .|.. .... ..+||+++++|....... . ..+
T Consensus 262 ~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (469)
T PRK13511 262 GVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVP 341 (469)
T ss_pred HHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCCC
Confidence 00 0000 0001 347999999996432100 0 000
Q ss_pred H-h--HHHHHHHHHHHHHHHHHhcCC--cEEEEecCCCCCCC-----CCChHHHHHHHHHHHHHHHHHhhcCCCccceee
Q 013811 293 D-Q--LSFLNNWLDTHIQDAEHILRK--PILLAEFGKSRKDP-----GYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLF 362 (436)
Q Consensus 293 ~-~--~~~~~~~i~~~~~~a~~~~~k--Pv~i~EfG~~~~~~-----g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~ 362 (436)
. . .....+-|...+....+.+++ ||+|+|.|+...+. ...+..|..|+++.+..+.+++.+|..+.|++.
T Consensus 342 ~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~ 421 (469)
T PRK13511 342 TTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFI 421 (469)
T ss_pred cCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 0 0 011123344445445444765 79999999974321 134678999999999999999999999999999
Q ss_pred cccccCCCCCCCCC----ceEEeC
Q 013811 363 WQLLTEGMDAFRDG----YEIVLS 382 (436)
Q Consensus 363 W~~~~~g~~~~~dg----~~i~~~ 382 (436)
|++.|+. +|.+| |+++..
T Consensus 422 WSl~Dnf--EW~~Gy~~RfGl~~V 443 (469)
T PRK13511 422 WSLMDVF--SWSNGYEKRYGLFYV 443 (469)
T ss_pred ccccccc--chhcCccCccceEEE
Confidence 9999984 46555 555554
No 16
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=9.1e-18 Score=168.02 Aligned_cols=283 Identities=19% Similarity=0.240 Sum_probs=190.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCC--CCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPG--SYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg--~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y 144 (436)
-+++++|++.||++|+|+.|+-+ .|+++-|..+ ..|+++++.+|+++++|.++||..+++|+++ + .
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI----~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hf-d-------~ 125 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSI----EWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHF-D-------L 125 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeee----eEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeccc-C-------C
Confidence 47899999999999999999933 3777777543 5999999999999999999999999999874 3 2
Q ss_pred hhHHhhc-CCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC------------
Q 013811 145 VNWARSQ-GQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDP------------ 211 (436)
Q Consensus 145 ~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~------------ 211 (436)
|.|.... |+ |.|.+..+.|.+|.+.+.+| |+|. |-.|.++|||++....
T Consensus 126 P~~L~~~ygG--------W~nR~~i~~F~~ya~~vf~~--------f~dk--Vk~W~TFNE~n~~~~~~y~~~~~~p~~~ 187 (460)
T COG2723 126 PLWLQKPYGG--------WENRETVDAFARYAATVFER--------FGDK--VKYWFTFNEPNVVVELGYLYGGHPPGIV 187 (460)
T ss_pred cHHHhhccCC--------ccCHHHHHHHHHHHHHHHHH--------hcCc--ceEEEEecchhhhhcccccccccCCCcc
Confidence 4555443 22 78999999999999999999 9985 7799999999976431
Q ss_pred C-hHHHHHHH------HHHHHHhhccCCC-C-EEEeCCCcccCCCC-Ccc--------------------ccCCCCCc--
Q 013811 212 S-GRTIQAWI------TEMASYVKSIDRN-H-LLEAGLEGFYGQST-PQR--------------------KRVNPNLD-- 259 (436)
Q Consensus 212 ~-~~~~~~w~------~~~~~~Ir~~Dp~-~-lV~vG~~g~~~~~~-~~~--------------------~~~np~~~-- 259 (436)
+ ...+++.. ..+.+.+|++.|+ . -++......|..+. |+. .+..|.+.
T Consensus 188 ~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~ 267 (460)
T COG2723 188 DPKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEK 267 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHH
Confidence 1 11222222 2345778888886 2 23333333344331 110 11222110
Q ss_pred ----cc-------chhhhhcCCCCcceEEeecCC-CC-----------CCCCCCh--------hH---hHHHHHHHHHHH
Q 013811 260 ----IG-------TDFVANNLIPGIDFATVHSYP-DQ-----------WLSSSND--------RD---QLSFLNNWLDTH 305 (436)
Q Consensus 260 ----~g-------~df~~~~~~~~iD~~s~H~Y~-~~-----------w~~~~~~--------~~---~~~~~~~~i~~~ 305 (436)
.+ .|. .......+||+++++|- .. ++....+ +. ..+...+-|...
T Consensus 268 ~~~~~~~~~~~~~~Dl-~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~ 346 (460)
T COG2723 268 ELEENGILPEIEDGDL-EILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDI 346 (460)
T ss_pred HHHhcCCCcccCcchH-HHHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHH
Confidence 00 010 11223459999999997 21 1111000 00 122234445555
Q ss_pred HHHHHHhcCCcEEEEecCCCCCC----CCCChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccCCCCCCCCC----c
Q 013811 306 IQDAEHILRKPILLAEFGKSRKD----PGYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGMDAFRDG----Y 377 (436)
Q Consensus 306 ~~~a~~~~~kPv~i~EfG~~~~~----~g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~dg----~ 377 (436)
+....+.+++|++|+|.|+...+ .+..+..|.+|++..+..+.+++.+|..+.|++.|++.|.- +|..| |
T Consensus 347 l~~~~~rY~~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~--sw~~gy~kRY 424 (460)
T COG2723 347 LEKLYERYGIPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNY--SWANGYKKRY 424 (460)
T ss_pred HHHHHHHhCCCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceeccccccc--chhhcccccc
Confidence 55555458999999999976542 22466899999999999999999999999999999999963 45544 5
Q ss_pred eEEeC
Q 013811 378 EIVLS 382 (436)
Q Consensus 378 ~i~~~ 382 (436)
++++.
T Consensus 425 Gli~V 429 (460)
T COG2723 425 GLVYV 429 (460)
T ss_pred ccEEE
Confidence 55554
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.79 E-value=1.1e-17 Score=172.17 Aligned_cols=284 Identities=18% Similarity=0.213 Sum_probs=187.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC--CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS--PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~--pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y 144 (436)
-+++++|++.|+++|+|+.|+-+ .|+++.|. ++.+|++.++.+|.+|+++.++||.++++|+++ + .
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si----~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~-~-------~ 137 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSI----AWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF-D-------V 137 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeec----eeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-C-------C
Confidence 47899999999999999999833 37788875 456899999999999999999999999999864 2 3
Q ss_pred hhHHhhc-CCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC----------CCh
Q 013811 145 VNWARSQ-GQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD----------PSG 213 (436)
Q Consensus 145 ~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~----------~~~ 213 (436)
|.|.... |. |.+++..+.|.+|++.+++| |++. |-.|...|||++... +.+
T Consensus 138 P~~l~~~~GG--------W~~~~~~~~F~~ya~~~~~~--------fgd~--Vk~WiTfNEPn~~~~~gy~~~g~~~~p~ 199 (474)
T PRK09852 138 PMHLVTEYGS--------WRNRKMVEFFSRYARTCFEA--------FDGL--VKYWLTFNEINIMLHSPFSGAGLVFEEG 199 (474)
T ss_pred CHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHH--------hcCc--CCeEEeecchhhhhccCccccCcccCCC
Confidence 5565432 32 78899999999999999999 9996 558999999984310 111
Q ss_pred ----H-HHHHHH------HHHHHHhhccCCCCEEEeCCC--cccCCC-CCcc------------ccCCCC----Cc-ccc
Q 013811 214 ----R-TIQAWI------TEMASYVKSIDRNHLLEAGLE--GFYGQS-TPQR------------KRVNPN----LD-IGT 262 (436)
Q Consensus 214 ----~-~~~~w~------~~~~~~Ir~~Dp~~lV~vG~~--g~~~~~-~~~~------------~~~np~----~~-~g~ 262 (436)
. .++.-. .++++++|+..|+-.|.+-.. .++..+ .++. +...|. |- ...
T Consensus 200 ~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~ 279 (474)
T PRK09852 200 ENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSA 279 (474)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHH
Confidence 0 112221 344566788777755553322 122211 1100 000110 00 000
Q ss_pred hhhh-------------hcCCCCcceEEeecCCCCCCCC---------CC-------h--hH---hHHHHHHHHHHHHHH
Q 013811 263 DFVA-------------NNLIPGIDFATVHSYPDQWLSS---------SN-------D--RD---QLSFLNNWLDTHIQD 308 (436)
Q Consensus 263 df~~-------------~~~~~~iD~~s~H~Y~~~w~~~---------~~-------~--~~---~~~~~~~~i~~~~~~ 308 (436)
.+.. ......+||+++++|....... .. . +. ..+...+-|+..+..
T Consensus 280 ~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~ 359 (474)
T PRK09852 280 RVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNM 359 (474)
T ss_pred HHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHH
Confidence 0000 0113567999999995422110 00 0 00 012233445555555
Q ss_pred HHHhcCCcEEEEecCCCCCC-----CCCChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccCCCCCCCCC-----ce
Q 013811 309 AEHILRKPILLAEFGKSRKD-----PGYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGMDAFRDG-----YE 378 (436)
Q Consensus 309 a~~~~~kPv~i~EfG~~~~~-----~g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~dg-----~~ 378 (436)
..+.+++||+|+|.|+...+ ....+..|..|++..+..+.+++.+|..+.|++.|++.|+. +|..| |+
T Consensus 360 ~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~--Ew~~G~y~~RfG 437 (474)
T PRK09852 360 MYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLV--SASTGEMSKRYG 437 (474)
T ss_pred HHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccc--cccCCCccceee
Confidence 55558999999999997432 11356789999999999999999999999999999999984 46555 66
Q ss_pred EEeC
Q 013811 379 IVLS 382 (436)
Q Consensus 379 i~~~ 382 (436)
++..
T Consensus 438 Lv~V 441 (474)
T PRK09852 438 FVYV 441 (474)
T ss_pred eEEE
Confidence 6664
No 18
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.79 E-value=1.4e-17 Score=171.77 Aligned_cols=284 Identities=17% Similarity=0.176 Sum_probs=188.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC--CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS--PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~--pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y 144 (436)
.+++++|++.||++|+|+.|+-+ .|+++.|. .+.+|++.++.++.+|+++.++||.++++|+++ + .
T Consensus 68 Yhry~EDI~Lm~elG~~~yRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~-d-------l 135 (477)
T PRK15014 68 YGHYKEDIKLFAEMGFKCFRTSI----AWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHF-E-------M 135 (477)
T ss_pred ccccHHHHHHHHHcCCCEEEecc----cceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-C-------C
Confidence 46899999999999999999833 38888885 456899999999999999999999999999863 2 3
Q ss_pred hhHHhhc-CCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC-----C-----C---
Q 013811 145 VNWARSQ-GQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCT-----S-----D--- 210 (436)
Q Consensus 145 ~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~-----~-----~--- 210 (436)
|.|.... |+ |.+++..+.|.+|++.+++| |++. |-.|...|||+.. . .
T Consensus 136 P~~L~~~yGG--------W~n~~~~~~F~~Ya~~~f~~--------fgdr--Vk~WiT~NEp~~~~~~~~~~~gy~~~g~ 197 (477)
T PRK15014 136 PLHLVQQYGS--------WTNRKVVDFFVRFAEVVFER--------YKHK--VKYWMTFNEINNQRNWRAPLFGYCCSGV 197 (477)
T ss_pred CHHHHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hcCc--CCEEEEecCccccccccccccccccccc
Confidence 5565543 33 78899999999999999999 9996 5689999999742 0 0
Q ss_pred --CCh----H-HHHHH------HHHHHHHhhccCCCCEEEeCCC--cccCCCC-Ccc-----------c-cCCCC----C
Q 013811 211 --PSG----R-TIQAW------ITEMASYVKSIDRNHLLEAGLE--GFYGQST-PQR-----------K-RVNPN----L 258 (436)
Q Consensus 211 --~~~----~-~~~~w------~~~~~~~Ir~~Dp~~lV~vG~~--g~~~~~~-~~~-----------~-~~np~----~ 258 (436)
+.. . .++.- ..++++.+|+..|+..|.+-.. .++..+. ++. . ...|. |
T Consensus 198 ~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~Y 277 (477)
T PRK15014 198 VYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYY 277 (477)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCC
Confidence 110 0 11222 1344677888888766654322 2222211 100 0 01111 0
Q ss_pred c-ccch----------hh----hhcCCCCcceEEeecCCCCCCCC---------------CCh--hH---hHHHHHHHHH
Q 013811 259 D-IGTD----------FV----ANNLIPGIDFATVHSYPDQWLSS---------------SND--RD---QLSFLNNWLD 303 (436)
Q Consensus 259 ~-~g~d----------f~----~~~~~~~iD~~s~H~Y~~~w~~~---------------~~~--~~---~~~~~~~~i~ 303 (436)
- .... +. .......+||+++++|....... .+. +. ..+...+-|+
T Consensus 278 P~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~ 357 (477)
T PRK15014 278 PSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLR 357 (477)
T ss_pred CHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHH
Confidence 0 0000 00 00113567999999995321100 000 00 0122334455
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCC----CC-CChHHHHHHHHHHHHHHHHHhh-cCCCccceeecccccCCCCCCCCC-
Q 013811 304 THIQDAEHILRKPILLAEFGKSRKD----PG-YSTYQRDVMFNTVYYKIYSSAK-RGGAAAGGLFWQLLTEGMDAFRDG- 376 (436)
Q Consensus 304 ~~~~~a~~~~~kPv~i~EfG~~~~~----~g-~~~~~r~~~~~~~~~~i~~~~~-~~~~~~G~~~W~~~~~g~~~~~dg- 376 (436)
..+....+.+++||+|+|.|+...+ .| ..+..|..|++..+..+..++. +|..+.|++.|++.|+. +|..|
T Consensus 358 ~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~Dnf--Ew~~G~ 435 (477)
T PRK15014 358 YALCELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCV--SFTTGQ 435 (477)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhh--cccCCC
Confidence 5555555558999999999998532 11 3467899999999999999995 89999999999999984 46555
Q ss_pred ----ceEEeC
Q 013811 377 ----YEIVLS 382 (436)
Q Consensus 377 ----~~i~~~ 382 (436)
|++++.
T Consensus 436 y~~RfGl~~V 445 (477)
T PRK15014 436 YSKRYGFIYV 445 (477)
T ss_pred ccCccceEEE
Confidence 666663
No 19
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.79 E-value=1.1e-19 Score=187.49 Aligned_cols=279 Identities=19% Similarity=0.244 Sum_probs=178.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC--CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS--PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~--pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y 144 (436)
.+++++||+.||++|+|+.|+-+ .|++++|. .|.+|++.++.++.+|+++.++||++|++|++. ..
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi----~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~--------~~ 124 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSI----SWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHF--------DL 124 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE------HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS----------
T ss_pred hhhhhHHHHHHHhhccceeeeec----chhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeec--------cc
Confidence 47899999999999999999833 37888887 599999999999999999999999999999874 34
Q ss_pred hhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC---------C---C
Q 013811 145 VNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD---------P---S 212 (436)
Q Consensus 145 ~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~---------~---~ 212 (436)
|.|....|. |.+++..+.|.+|++.++++ |++. |-.|...|||..... + +
T Consensus 125 P~~l~~~gg--------w~~~~~~~~F~~Ya~~~~~~--------~gd~--V~~w~T~NEp~~~~~~~y~~g~~~p~~~~ 186 (455)
T PF00232_consen 125 PLWLEDYGG--------WLNRETVDWFARYAEFVFER--------FGDR--VKYWITFNEPNVFALLGYLYGGFPPGRDS 186 (455)
T ss_dssp BHHHHHHTG--------GGSTHHHHHHHHHHHHHHHH--------HTTT--BSEEEEEETHHHHHHHHHTSSSSTTCSST
T ss_pred ccceeeccc--------ccCHHHHHHHHHHHHHHHHH--------hCCC--cceEEeccccceeeccccccccccccccc
Confidence 677765453 78899999999999999999 9986 557999999985321 1 1
Q ss_pred hH-H------HHHHHHHHHHHhhccCCCCEEEeCCCc--ccCCCC-C-cc--------------------ccCCCCC---
Q 013811 213 GR-T------IQAWITEMASYVKSIDRNHLLEAGLEG--FYGQST-P-QR--------------------KRVNPNL--- 258 (436)
Q Consensus 213 ~~-~------~~~w~~~~~~~Ir~~Dp~~lV~vG~~g--~~~~~~-~-~~--------------------~~~np~~--- 258 (436)
.. . +..-..++.+.+|+..|+..|.+-... ++..+. + .. .+..|..
T Consensus 187 ~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~ 266 (455)
T PF00232_consen 187 LKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKE 266 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHH
T ss_pred cchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhh
Confidence 11 1 112234557888888888887653321 122111 0 00 0001100
Q ss_pred ---cc--cchhh---hhcCCCCcceEEeecCCCCCC---C--CC--------Ch-----------hHhHHHHHHHHHHHH
Q 013811 259 ---DI--GTDFV---ANNLIPGIDFATVHSYPDQWL---S--SS--------ND-----------RDQLSFLNNWLDTHI 306 (436)
Q Consensus 259 ---~~--g~df~---~~~~~~~iD~~s~H~Y~~~w~---~--~~--------~~-----------~~~~~~~~~~i~~~~ 306 (436)
.. ...|. .......+||+++++|..... + .. .. +.......+.|+..+
T Consensus 267 ~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L 346 (455)
T PF00232_consen 267 YLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVL 346 (455)
T ss_dssp HHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHH
T ss_pred ccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhh
Confidence 00 00000 011256899999999953211 0 00 00 000011123344444
Q ss_pred HHHHHhcC-CcEEEEecCCCCCCC----CCChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccCCCCCCCCCc
Q 013811 307 QDAEHILR-KPILLAEFGKSRKDP----GYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGMDAFRDGY 377 (436)
Q Consensus 307 ~~a~~~~~-kPv~i~EfG~~~~~~----g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~dg~ 377 (436)
....+.++ +||+|+|.|+..... ...+..|..|++..+..+.+++.+|..+.|+++|++.|+. +|.+||
T Consensus 347 ~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~--Ew~~Gy 420 (455)
T PF00232_consen 347 RYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNF--EWAEGY 420 (455)
T ss_dssp HHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB-----BGGGGG
T ss_pred hhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeecccccc--ccccCc
Confidence 44433466 999999999976531 1346899999999999999999999999999999999984 576553
No 20
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.74 E-value=1.4e-16 Score=151.69 Aligned_cols=276 Identities=20% Similarity=0.297 Sum_probs=136.6
Q ss_pred CCCCCEEeeCCeEE--ECCeEEEEEeecccccccc----cCCc-chhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc
Q 013811 28 AGDGFIRTRGSHFL--LNGNLYFANGFNAYWLMYV----ASDP-SQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR 100 (436)
Q Consensus 28 ~~~~fv~v~g~~f~--~nGkp~~~~G~N~~~~~~~----~~~~-~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~ 100 (436)
++...|+++|++|. .+|+.|+++|+.+...... ..|| .+.+.+++|+..|+++|+|+||++....
T Consensus 6 ~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp-------- 77 (314)
T PF03198_consen 6 AAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDP-------- 77 (314)
T ss_dssp TTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---T--------
T ss_pred ccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCC--------
Confidence 34556999999999 5999999999997433321 1245 4668999999999999999999966421
Q ss_pred CCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHh
Q 013811 101 SPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLN 180 (436)
Q Consensus 101 ~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~ 180 (436)
. ..-|.++.+..+.|||||++|... .+.++.. .+..-| -..+.+....++.
T Consensus 78 ~---------~nHd~CM~~~~~aGIYvi~Dl~~p---~~sI~r~------------~P~~sw-----~~~l~~~~~~vid 128 (314)
T PF03198_consen 78 S---------KNHDECMSAFADAGIYVILDLNTP---NGSINRS------------DPAPSW-----NTDLLDRYFAVID 128 (314)
T ss_dssp T---------S--HHHHHHHHHTT-EEEEES-BT---TBS--TT------------S-----------HHHHHHHHHHHH
T ss_pred C---------CCHHHHHHHHHhCCCEEEEecCCC---CccccCC------------CCcCCC-----CHHHHHHHHHHHH
Confidence 1 123789999999999999999653 1111100 001112 2334445556666
Q ss_pred ccccccccccCCCCcEEEEEeecCCCCCCCC--ChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCC-
Q 013811 181 RYNTFTGIHYKDDPTIMAWELMNEPRCTSDP--SGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPN- 257 (436)
Q Consensus 181 r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~--~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~- 257 (436)
. ++..|+++++-.+||-...... .++-+++.++.|.++||+... +.|.||...- ..++.......
T Consensus 129 ~--------fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsaa---D~~~~r~~~a~Y 196 (314)
T PF03198_consen 129 A--------FAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSAA---DDAEIRQDLANY 196 (314)
T ss_dssp H--------HTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE------TTTHHHHHHH
T ss_pred H--------hccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEcc---CChhHHHHHHHH
Confidence 6 8888999999999998764321 245678888999999998654 5566665321 01100000000
Q ss_pred CcccchhhhhcCCCCcceEEeecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHH
Q 013811 258 LDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRD 337 (436)
Q Consensus 258 ~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g~~~~~r~ 337 (436)
+..|.+ ...+||++++.|. |...++++.. -.....+.... +..|++++|||+....+.
T Consensus 197 l~Cg~~------~~~iDf~g~N~Y~--WCg~Stf~~S------Gy~~l~~~f~~-y~vPvffSEyGCn~~~pR------- 254 (314)
T PF03198_consen 197 LNCGDD------DERIDFFGLNSYE--WCGDSTFETS------GYDRLTKEFSN-YSVPVFFSEYGCNTVTPR------- 254 (314)
T ss_dssp TTBTT-----------S-EEEEE------SS--HHHH------SHHHHHHHHTT--SS-EEEEEE---SSSS--------
T ss_pred hcCCCc------ccccceeeeccce--ecCCCccccc------cHHHHHHHhhC-CCCCeEEcccCCCCCCCc-------
Confidence 111211 2489999999995 8765544321 12333444554 899999999999865432
Q ss_pred HHHHHHHHHHHHHhhcCCCccceeecccccCCCCCCCCCceEEeC
Q 013811 338 VMFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGMDAFRDGYEIVLS 382 (436)
Q Consensus 338 ~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~dg~~i~~~ 382 (436)
.+.++- .++..-.. ....|.+...|..+. ++|++|--
T Consensus 255 -~f~ev~-aly~~~Mt-~v~SGGivYEy~~e~-----n~yGlV~~ 291 (314)
T PF03198_consen 255 -TFTEVP-ALYSPEMT-DVWSGGIVYEYFQEA-----NNYGLVEI 291 (314)
T ss_dssp ---THHH-HHTSHHHH-TTEEEEEES-SB--S-----SS--SEEE
T ss_pred -cchHhH-HhhCccch-hheeceEEEEEeccC-----CceEEEEE
Confidence 111111 12221111 257899999998762 45666663
No 21
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=6.8e-15 Score=158.66 Aligned_cols=156 Identities=16% Similarity=0.237 Sum_probs=122.9
Q ss_pred cCCCCC--EEeeCCeEEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCC
Q 013811 27 EAGDGF--IRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGS 104 (436)
Q Consensus 27 ~~~~~f--v~v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~ 104 (436)
....|| |++..+.|.+||||++++|+|.|..........+.+.++++|+.||++|+|+||++.+.
T Consensus 278 ~~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP------------- 344 (808)
T COG3250 278 ALRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYP------------- 344 (808)
T ss_pred EeeeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCC-------------
Confidence 345788 88888999999999999999987665543333345669999999999999999997542
Q ss_pred CChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhcccc
Q 013811 105 YNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNT 184 (436)
Q Consensus 105 ~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~ 184 (436)
++ ..+.+.|.++||+|+-+..-.+. + +..+++.++.....+++||+|
T Consensus 345 ~~-------~~~ydLcDelGllV~~Ea~~~~~---------------~--------~~~~~~~~k~~~~~i~~mver--- 391 (808)
T COG3250 345 NS-------EEFYDLCDELGLLVIDEAMIETH---------------G--------MPDDPEWRKEVSEEVRRMVER--- 391 (808)
T ss_pred CC-------HHHHHHHHHhCcEEEEecchhhc---------------C--------CCCCcchhHHHHHHHHHHHHh---
Confidence 22 26789999999999877532210 1 115678888999999999999
Q ss_pred ccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCCCc
Q 013811 185 FTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEG 242 (436)
Q Consensus 185 ~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g 242 (436)
.||||+|++|.++||...... ...+...||+.||+++|..+...
T Consensus 392 -----~knHPSIiiWs~gNE~~~g~~---------~~~~~~~~k~~d~~r~~~~~~~~ 435 (808)
T COG3250 392 -----DRNHPSIIIWSLGNESGHGSN---------HWALYRWFKASDPTRPVQYEGRG 435 (808)
T ss_pred -----ccCCCcEEEEeccccccCccc---------cHHHHHHHhhcCCccceeccCcc
Confidence 999999999999999886432 25567889999999999887654
No 22
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.61 E-value=1.5e-14 Score=141.52 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=138.7
Q ss_pred HHHHHHHHHHCCCCEEEEccccCCCCCCCccC-CCCCChhhhhhHHHHHHHHHHcCCEEEEeccc--CCCCCCChhhhhh
Q 013811 70 VSTAFHEAASHGLTVARTWAFSDGGYRPLQRS-PGSYNEQMFKGLDFVIAEARKYGIKLILSLAN--NYDSFGGKKQYVN 146 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~-pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~--~w~~~gg~~~y~~ 146 (436)
.+..|+.||+.|+|.||+=++.+. . .|..+ ++..-.+...|+++||+|+|+||- .|.+.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P-------~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDP-------- 87 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNP-------YDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADP-------- 87 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS--------TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BT--------
T ss_pred CCCHHHHHHhcCCCeEEEEeccCC-------cccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCC--------
Confidence 356799999999999999444332 2 24334 566667888899999999999983 23332
Q ss_pred HHhhcCCCCCCCCCCC--CChHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeecCCCCCCCC------ChHHHH
Q 013811 147 WARSQGQFLTSDDDFF--RNPVVKGYYKNLIKTVLNRYNTFTGIHYKDD-PTIMAWELMNEPRCTSDP------SGRTIQ 217 (436)
Q Consensus 147 W~~~~G~~~~~~~~f~--~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~-p~I~~weL~NEp~~~~~~------~~~~~~ 217 (436)
|++. .+..+= +-.++.++..+|.+.+++. +++. -.+-+++++||-+..... .-+.+.
T Consensus 88 -----g~Q~-~P~aW~~~~~~~l~~~v~~yT~~vl~~--------l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a 153 (332)
T PF07745_consen 88 -----GKQN-KPAAWANLSFDQLAKAVYDYTKDVLQA--------LKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLA 153 (332)
T ss_dssp -----TB-B---TTCTSSSHHHHHHHHHHHHHHHHHH--------HHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHH
T ss_pred -----CCCC-CCccCCCCCHHHHHHHHHHHHHHHHHH--------HHHCCCCccEEEeCccccccccCcCCCccCHHHHH
Confidence 2210 111111 2256677778888888887 5554 224468999998865421 346788
Q ss_pred HHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecCCCCCCCCCChhHhHHH
Q 013811 218 AWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSF 297 (436)
Q Consensus 218 ~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~ 297 (436)
++++..+++||+.+|+..|++..+.-... ..+.+--+... ...-..|++++++||. |.. + +..
T Consensus 154 ~ll~ag~~AVr~~~p~~kV~lH~~~~~~~---------~~~~~~f~~l~-~~g~d~DviGlSyYP~-w~~--~----l~~ 216 (332)
T PF07745_consen 154 KLLNAGIKAVREVDPNIKVMLHLANGGDN---------DLYRWFFDNLK-AAGVDFDVIGLSYYPF-WHG--T----LED 216 (332)
T ss_dssp HHHHHHHHHHHTHSSTSEEEEEES-TTSH---------HHHHHHHHHHH-HTTGG-SEEEEEE-ST-TST-------HHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCCCch---------HHHHHHHHHHH-hcCCCcceEEEecCCC-Ccc--h----HHH
Confidence 88899999999999999999875421100 00000001111 1124568999999996 543 1 122
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCCCCC----------------CC--CChHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013811 298 LNNWLDTHIQDAEHILRKPILLAEFGKSRKD----------------PG--YSTYQRDVMFNTVYYKIYSSAKRGGAAAG 359 (436)
Q Consensus 298 ~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~----------------~g--~~~~~r~~~~~~~~~~i~~~~~~~~~~~G 359 (436)
+ ...+....+.++|||+|.|.|.+... .+ .+++.+..+++.+++.+.+- . ++.+.|
T Consensus 217 l----~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~-p-~~~g~G 290 (332)
T PF07745_consen 217 L----KNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV-P-NGGGLG 290 (332)
T ss_dssp H----HHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS----TTEEE
T ss_pred H----HHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh-c-cCCeEE
Confidence 2 22233322348999999999987551 01 25677889999888876442 1 247889
Q ss_pred eeec--cccc
Q 013811 360 GLFW--QLLT 367 (436)
Q Consensus 360 ~~~W--~~~~ 367 (436)
.+|| .|..
T Consensus 291 vfYWeP~w~~ 300 (332)
T PF07745_consen 291 VFYWEPAWIP 300 (332)
T ss_dssp EEEE-TT-GG
T ss_pred EEeecccccc
Confidence 9999 4444
No 23
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=99.54 E-value=2.3e-13 Score=132.24 Aligned_cols=168 Identities=22% Similarity=0.350 Sum_probs=100.7
Q ss_pred CCeEE-ECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCC-------CC--CC-ccCC---
Q 013811 37 GSHFL-LNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGG-------YR--PL-QRSP--- 102 (436)
Q Consensus 37 g~~f~-~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~-------~~--~l-q~~p--- 102 (436)
+.+|+ .||+||++.|-.. |..+... ++++++..|+..++.|+|+||+-++.... ++ ++ ...+
T Consensus 2 ~r~f~~~dG~Pff~lgdT~-W~~~~~~---~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~ 77 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTA-WSLFHRL---TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQF 77 (289)
T ss_dssp SSSEEETTS-B--EEEEE--TTHHHH-----HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT----
T ss_pred CceEecCCCCEEeehhHHH-HHHhhCC---CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCcccc
Confidence 56788 4999999999665 5444321 34788899999999999999996654310 11 11 1111
Q ss_pred --CCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh--hhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 013811 103 --GSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY--VNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTV 178 (436)
Q Consensus 103 --g~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y--~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~i 178 (436)
..+|++.|+.+|++|+.|.++||.+.|.+. |.. .| ..|... ...+ -.+..++|++.|
T Consensus 78 d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~--wg~-----~~~~~~Wg~~--------~~~m----~~e~~~~Y~~yv 138 (289)
T PF13204_consen 78 DFTRPNPAYFDHLDRRIEKANELGIEAALVPF--WGC-----PYVPGTWGFG--------PNIM----PPENAERYGRYV 138 (289)
T ss_dssp --TT----HHHHHHHHHHHHHHTT-EEEEESS---HH-----HHH---------------TTSS-----HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEE--ECC-----cccccccccc--------ccCC----CHHHHHHHHHHH
Confidence 237899999999999999999999977664 311 12 123210 0111 245677899999
Q ss_pred HhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCCC
Q 013811 179 LNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLE 241 (436)
Q Consensus 179 v~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~ 241 (436)
++| |+..|+|+ |.|+||- .. .....+..++|++.||+.||.+|+|+...
T Consensus 139 ~~R--------y~~~~Nvi-W~l~gd~-~~----~~~~~~~w~~~~~~i~~~dp~~L~T~H~~ 187 (289)
T PF13204_consen 139 VAR--------YGAYPNVI-WILGGDY-FD----TEKTRADWDAMARGIKENDPYQLITIHPC 187 (289)
T ss_dssp HHH--------HTT-SSEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-
T ss_pred HHH--------HhcCCCCE-EEecCcc-CC----CCcCHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence 999 99999998 9999999 22 12235556899999999999999987653
No 24
>PLN03059 beta-galactosidase; Provisional
Probab=99.52 E-value=7.1e-13 Score=141.58 Aligned_cols=200 Identities=19% Similarity=0.245 Sum_probs=140.2
Q ss_pred chhHHHHHHHHHHHhhcccccccccCCCCCEEeeCCeEEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCC
Q 013811 3 RLHLAFAIFLAFFIHRQSFNVLHVEAGDGFIRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGL 82 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 82 (436)
|-+++..+||+||++++++=+-.. ..-|++++..|++||+|+++..-.+|+... .++.++..|+.||++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~f~idG~p~~i~sG~iHY~R~------~p~~W~d~L~k~Ka~Gl 73 (840)
T PLN03059 3 RGSLVVFLLLFLLFLLSSSWVSHG---SASVSYDHRAFIINGQRRILISGSIHYPRS------TPEMWPDLIQKAKDGGL 73 (840)
T ss_pred ccceehhhHHHHHHHhhhhhhccc---eeEEEEeCCEEEECCEEEEEEEeCcccCcC------CHHHHHHHHHHHHHcCC
Confidence 334444444555555444433111 113899999999999999999999887653 24789999999999999
Q ss_pred CEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc----cCCCCCCChhhhhhHHhh-cCCCCCC
Q 013811 83 TVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA----NNYDSFGGKKQYVNWARS-QGQFLTS 157 (436)
Q Consensus 83 N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~----~~w~~~gg~~~y~~W~~~-~G~~~~~ 157 (436)
|+|=++++ |+.-||.||.||-+....|.++|++|++.||+||+-.- ..|+ +||. |.|... .+..+.
T Consensus 74 NtV~tYV~----Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~-~GGl---P~WL~~~~~i~~R- 144 (840)
T PLN03059 74 DVIQTYVF----WNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWN-FGGF---PVWLKYVPGIEFR- 144 (840)
T ss_pred CeEEEEec----ccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeec-CCCC---chhhhcCCCcccc-
Confidence 99999887 66778999999988889999999999999999999874 3353 5876 566542 121111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC---CChHHHHHHHHHHHH
Q 013811 158 DDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD---PSGRTIQAWITEMAS 225 (436)
Q Consensus 158 ~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~---~~~~~~~~w~~~~~~ 225 (436)
-+||...++.++|+.+|+..+-+ .+..+++--.|++.++.||-..... .+...+.+|+++|+.
T Consensus 145 ----s~d~~fl~~v~~~~~~l~~~l~~-~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~ 210 (840)
T PLN03059 145 ----TDNGPFKAAMQKFTEKIVDMMKS-EKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAV 210 (840)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHHhh-cceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHH
Confidence 24788888888888888887410 1122455556889999999875421 123456666665553
No 25
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.50 E-value=3.2e-12 Score=129.43 Aligned_cols=282 Identities=17% Similarity=0.244 Sum_probs=173.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc-CC--CCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR-SP--GSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQ 143 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~-~p--g~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 143 (436)
.+.+++|++.|+++|+++.|+- . .|+++-| .+ +..|++.++.+..+|++..++||.++++|++ |+.
T Consensus 90 Yh~ykeDv~Lmk~lgv~afRFS-I---sWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfH-wDl------ 158 (524)
T KOG0626|consen 90 YHRYKEDVKLMKELGVDAFRFS-I---SWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFH-WDL------ 158 (524)
T ss_pred hhhhHHHHHHHHHcCCCeEEEE-e---ehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEec-CCC------
Confidence 4689999999999999999983 2 2666655 22 4589999999999999999999999999985 543
Q ss_pred hhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC-------------
Q 013811 144 YVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD------------- 210 (436)
Q Consensus 144 y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~------------- 210 (436)
|.+...+ -.=|-++...+.|++|.+-+.++ |+|. |-.|...|||+....
T Consensus 159 -Pq~LeDe-------YgGwLn~~ivedF~~yA~~CF~~--------fGDr--VK~WiT~NEP~v~s~~gY~~G~~aPGrC 220 (524)
T KOG0626|consen 159 -PQALEDE-------YGGWLNPEIVEDFRDYADLCFQE--------FGDR--VKHWITFNEPNVFSIGGYDTGTKAPGRC 220 (524)
T ss_pred -CHHHHHH-------hccccCHHHHHHHHHHHHHHHHH--------hccc--ceeeEEecccceeeeehhccCCCCCCCC
Confidence 3333321 01167899999999999999999 9996 779999999994321
Q ss_pred ----------CCh-HHH---HHH---HHHHHHHhhcc-CC--CCEEEeCCCc-ccCCCCC--c-------------cccC
Q 013811 211 ----------PSG-RTI---QAW---ITEMASYVKSI-DR--NHLLEAGLEG-FYGQSTP--Q-------------RKRV 254 (436)
Q Consensus 211 ----------~~~-~~~---~~w---~~~~~~~Ir~~-Dp--~~lV~vG~~g-~~~~~~~--~-------------~~~~ 254 (436)
.++ +.+ ... ..++....|+. .+ +=.|.+.... |+-+.++ + +|..
T Consensus 221 s~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l 300 (524)
T KOG0626|consen 221 SKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFL 300 (524)
T ss_pred CcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhh
Confidence 011 111 111 12233333332 11 1133322211 2221111 0 0111
Q ss_pred CCCCcccchh---------------h---hhcCCCCcceEEeecCCCCCCCC----C-----------------------
Q 013811 255 NPNLDIGTDF---------------V---ANNLIPGIDFATVHSYPDQWLSS----S----------------------- 289 (436)
Q Consensus 255 np~~~~g~df---------------~---~~~~~~~iD~~s~H~Y~~~w~~~----~----------------------- 289 (436)
.| .. ..|+ . ........||+++++|...+... .
T Consensus 301 ~p-~~-~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 378 (524)
T KOG0626|consen 301 EP-LT-FGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDLI 378 (524)
T ss_pred cc-cc-cCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeecccccc
Confidence 11 00 0011 1 01224677999999995322100 0
Q ss_pred ---ChhHhHHHHHHHHHHHHHHHHHh-cCCcEEEEecCCCCCCC-------CCChHHHHHHHHHHHHHHHHHhh-cCCCc
Q 013811 290 ---NDRDQLSFLNNWLDTHIQDAEHI-LRKPILLAEFGKSRKDP-------GYSTYQRDVMFNTVYYKIYSSAK-RGGAA 357 (436)
Q Consensus 290 ---~~~~~~~~~~~~i~~~~~~a~~~-~~kPv~i~EfG~~~~~~-------g~~~~~r~~~~~~~~~~i~~~~~-~~~~~ 357 (436)
.....+.....-|+..+..+++. .+.|++|+|.|+..... ...+..|.+|++..+..+.++++ .+..+
T Consensus 379 ~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv 458 (524)
T KOG0626|consen 379 GPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNV 458 (524)
T ss_pred cccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCce
Confidence 00000111122244444444443 36999999999987531 23567899999999999999987 67788
Q ss_pred cceeecccccCCCCCCCCCceEEe
Q 013811 358 AGGLFWQLLTEGMDAFRDGYEIVL 381 (436)
Q Consensus 358 ~G~~~W~~~~~g~~~~~dg~~i~~ 381 (436)
.|++.|++.|+. +|.+||.+.+
T Consensus 459 ~GYf~WSLmDnf--Ew~~Gy~~RF 480 (524)
T KOG0626|consen 459 KGYFVWSLLDNF--EWLDGYKVRF 480 (524)
T ss_pred eeEEEeEcccch--hhhcCccccc
Confidence 999999999984 5777644333
No 26
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.50 E-value=2e-12 Score=123.77 Aligned_cols=221 Identities=22% Similarity=0.311 Sum_probs=142.7
Q ss_pred CCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHH
Q 013811 95 YRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNL 174 (436)
Q Consensus 95 ~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~ 174 (436)
|..++|++|.|| ++.+|.+++.|+++||++---.. -|.. +.|.|.... ..++.++.+.+|
T Consensus 3 W~~~ep~~G~~n---~~~~D~~~~~a~~~gi~v~gH~l-~W~~-----~~P~W~~~~-----------~~~~~~~~~~~~ 62 (254)
T smart00633 3 WDSTEPSRGQFN---FSGADAIVNFAKENGIKVRGHTL-VWHS-----QTPDWVFNL-----------SKETLLARLENH 62 (254)
T ss_pred cccccCCCCccC---hHHHHHHHHHHHHCCCEEEEEEE-eecc-----cCCHhhhcC-----------CHHHHHHHHHHH
Confidence 667899999998 88999999999999999832111 1322 346776421 135678899999
Q ss_pred HHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC----C--hHHH-HHHHHHHHHHhhccCCCCEEEeCCCcccCCC
Q 013811 175 IKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDP----S--GRTI-QAWITEMASYVKSIDRNHLLEAGLEGFYGQS 247 (436)
Q Consensus 175 v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~----~--~~~~-~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~ 247 (436)
++.+++| |++. |..|++.|||...... + .+.+ ..|+..+.+.+|+.||+..+.+.. |+..
T Consensus 63 i~~v~~r--------y~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd---y~~~ 129 (254)
T smart00633 63 IKTVVGR--------YKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND---YNTE 129 (254)
T ss_pred HHHHHHH--------hCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec---cCCc
Confidence 9999999 9875 7789999999864311 0 0001 267888999999999998887753 2221
Q ss_pred CCccccCCCCCcccchhhhhc--CCCCcceEEe--ecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHhcCCcEEEEecC
Q 013811 248 TPQRKRVNPNLDIGTDFVANN--LIPGIDFATV--HSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFG 323 (436)
Q Consensus 248 ~~~~~~~np~~~~g~df~~~~--~~~~iD~~s~--H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG 323 (436)
.+... ...+ .+++... ..-.+|-+++ |.+... .+. . .+.+.++...+ .++||+|+|++
T Consensus 130 ~~~~k--~~~~---~~~v~~l~~~g~~iDgiGlQ~H~~~~~----~~~----~----~~~~~l~~~~~-~g~pi~iTE~d 191 (254)
T smart00633 130 EPNAK--RQAI---YELVKKLKAKGVPIDGIGLQSHLSLGS----PNI----A----EIRAALDRFAS-LGLEIQITELD 191 (254)
T ss_pred CccHH--HHHH---HHHHHHHHHCCCccceeeeeeeecCCC----CCH----H----HHHHHHHHHHH-cCCceEEEEee
Confidence 11000 0000 1122211 1123776666 443211 111 1 24444555554 79999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccCCCCCCCC
Q 013811 324 KSRKDPGYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTEGMDAFRD 375 (436)
Q Consensus 324 ~~~~~~g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~d 375 (436)
+.... +++.++++++.++..+++. +.+.|.++|.+.|.. .|.+
T Consensus 192 v~~~~---~~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~~--~W~~ 234 (254)
T smart00633 192 ISGYP---NPQAQAADYEEVFKACLAH----PAVTGVTVWGVTDKY--SWLD 234 (254)
T ss_pred cCCCC---cHHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccCC--cccC
Confidence 98652 3367888888888877664 367899999998863 4644
No 27
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.44 E-value=4.9e-12 Score=124.55 Aligned_cols=168 Identities=15% Similarity=0.225 Sum_probs=110.1
Q ss_pred eEEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHH
Q 013811 39 HFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIA 118 (436)
Q Consensus 39 ~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~ 118 (436)
+|++||||+++.+--.|+.... ++.+++.|+.||++|+|+|-++++ |+..++.+|+||-+....|+.+|+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p------~~~W~~~l~k~ka~G~n~v~~yv~----W~~he~~~g~~df~g~~dl~~f~~ 70 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIP------PEYWRDRLQKMKAAGLNTVSTYVP----WNLHEPEEGQFDFTGNRDLDRFLD 70 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-------GGGHHHHHHHHHHTT-SEEEEE------HHHHSSBTTB---SGGG-HHHHHH
T ss_pred CeEECCEEEEEEEeeeccccCC------hhHHHHHHHHHHhCCcceEEEecc----ccccCCCCCcccccchhhHHHHHH
Confidence 4889999999999888766542 378999999999999999999876 556788999999888889999999
Q ss_pred HHHHcCCEEEEecc----cCCCCCCChhhhhhHHhhc-CCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCC
Q 013811 119 EARKYGIKLILSLA----NNYDSFGGKKQYVNWARSQ-GQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDD 193 (436)
Q Consensus 119 ~a~~~Gi~vil~l~----~~w~~~gg~~~y~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~ 193 (436)
.|+++||+||+-+- ..|+ +||. |.|.... +.. ---+|+...++.+++++.|++.+-+ ..+++.
T Consensus 71 ~a~~~gl~vilrpGpyi~aE~~-~gG~---P~Wl~~~~~~~-----~R~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G 138 (319)
T PF01301_consen 71 LAQENGLYVILRPGPYICAEWD-NGGL---PAWLLRKPDIR-----LRTNDPPFLEAVERWYRALAKIIKP---LQYTNG 138 (319)
T ss_dssp HHHHTT-EEEEEEES---TTBG-GGG-----GGGGGSTTS------SSSS-HHHHHHHHHHHHHHHHHHGG---GBGGGT
T ss_pred HHHHcCcEEEecccceeccccc-chhh---hhhhhcccccc-----ccccchhHHHHHHHHHHHHHHHHHh---hhhcCC
Confidence 99999999999863 2232 3664 5666532 111 1124677778888888887777544 336666
Q ss_pred CcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCC
Q 013811 194 PTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRN 233 (436)
Q Consensus 194 p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~ 233 (436)
-.|++.++.||..... .-.+.++.+.+..++.-+.
T Consensus 139 GpII~vQvENEyg~~~-----~~~~Y~~~l~~~~~~~g~~ 173 (319)
T PF01301_consen 139 GPIIMVQVENEYGSYG-----TDRAYMEALKDAYRDWGID 173 (319)
T ss_dssp SSEEEEEESSSGGCTS-----S-HHHHHHHHHHHHHTT-S
T ss_pred CceehhhhhhhhCCCc-----ccHhHHHHHHHHHHHhhCc
Confidence 6799999999998332 1234444555555544333
No 28
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=7.5e-12 Score=127.58 Aligned_cols=114 Identities=25% Similarity=0.306 Sum_probs=83.7
Q ss_pred HHHHHHHHHHCCCCEEEEccccCCCCCCCcc----CCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhh
Q 013811 70 VSTAFHEAASHGLTVARTWAFSDGGYRPLQR----SPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYV 145 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~----~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 145 (436)
.++++.++++.|+|+||++.. |-.+++ .|.....+.+..||++|++|.++||+|+|++|... |+.+..
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~----~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~---~~~~~~- 146 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIG----YWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYP---GGNNGH- 146 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccc----hhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccC---CCCCCc-
Confidence 489999999999999999553 112232 34434345566999999999999999999999752 221110
Q ss_pred hHHhhcCCCCCCCCCCCCC-hHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 013811 146 NWARSQGQFLTSDDDFFRN-PVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC 207 (436)
Q Consensus 146 ~W~~~~G~~~~~~~~f~~~-~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~ 207 (436)
........|.. ...++++.+.++.++.| |++.++|+++++.|||+.
T Consensus 147 --------~~s~~~~~~~~~~~~~~~~~~~w~~ia~~--------f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 147 --------EHSGYTSDYKEENENVEATIDIWKFIANR--------FKNYDTVIGFELINEPNG 193 (407)
T ss_pred --------CcccccccccccchhHHHHHHHHHHHHHh--------ccCCCceeeeeeecCCcc
Confidence 00111233333 45678999999999999 999999999999999996
No 29
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=99.37 E-value=7.5e-13 Score=105.51 Aligned_cols=75 Identities=27% Similarity=0.586 Sum_probs=47.8
Q ss_pred cCCCCcEEEEEeecC-CCCCC--------CCChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcc
Q 013811 190 YKDDPTIMAWELMNE-PRCTS--------DPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDI 260 (436)
Q Consensus 190 yk~~p~I~~weL~NE-p~~~~--------~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~ 260 (436)
|+++|+|++|+|+|| |.... ....+.+..|+++++++||++||+++|++|..+. ..
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~---~~------------ 69 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGG---DW------------ 69 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S----T------------
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccC---CH------------
Confidence 999999999999999 66221 1124679999999999999999999999886432 10
Q ss_pred cchhhhhcCCCCcceEEeecC
Q 013811 261 GTDFVANNLIPGIDFATVHSY 281 (436)
Q Consensus 261 g~df~~~~~~~~iD~~s~H~Y 281 (436)
..+ .....+.+||++||.|
T Consensus 70 -~~~-~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 -EDL-EQLQAENLDVISFHPY 88 (88)
T ss_dssp -THH-HHS--TT-SSEEB-EE
T ss_pred -HHH-HHhchhcCCEEeeecC
Confidence 012 2233589999999998
No 30
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=8.8e-10 Score=103.25 Aligned_cols=271 Identities=17% Similarity=0.214 Sum_probs=150.0
Q ss_pred EEEeecccccccccCCc---c-hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHc
Q 013811 48 FANGFNAYWLMYVASDP---S-QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKY 123 (436)
Q Consensus 48 ~~~G~N~~~~~~~~~~~---~-~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~ 123 (436)
|+.|+..-++....... . +....+..|+.||++|+|.||+=++.|.....-+.--|..++ +...-++-..|++.
T Consensus 39 FikGaDis~l~~lE~~Gvkf~d~ng~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD--~~k~ieiakRAk~~ 116 (403)
T COG3867 39 FIKGADISSLIELENSGVKFFDTNGVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNND--LKKAIEIAKRAKNL 116 (403)
T ss_pred hhccccHHHHHHHHHcCceEEccCChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcch--HHHHHHHHHHHHhc
Confidence 45666654544321110 0 113445668999999999999854443211111111122221 45555677788999
Q ss_pred CCEEEEeccc--CCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCC-cEEEEE
Q 013811 124 GIKLILSLAN--NYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDP-TIMAWE 200 (436)
Q Consensus 124 Gi~vil~l~~--~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p-~I~~we 200 (436)
||+|++++|- +|.+.+-...--.|.. .. | ...+++...|-+.+++. .++.- .+-+.+
T Consensus 117 GmKVl~dFHYSDfwaDPakQ~kPkaW~~---------l~-f--e~lk~avy~yTk~~l~~--------m~~eGi~pdmVQ 176 (403)
T COG3867 117 GMKVLLDFHYSDFWADPAKQKKPKAWEN---------LN-F--EQLKKAVYSYTKYVLTT--------MKKEGILPDMVQ 176 (403)
T ss_pred CcEEEeeccchhhccChhhcCCcHHhhh---------cC-H--HHHHHHHHHHHHHHHHH--------HHHcCCCccceE
Confidence 9999999983 3443211000011211 00 1 34455556666666666 55542 234679
Q ss_pred eecCCCCCCC-CCh-----HHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCC-CcccchhhhhcCCCCc
Q 013811 201 LMNEPRCTSD-PSG-----RTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPN-LDIGTDFVANNLIPGI 273 (436)
Q Consensus 201 L~NEp~~~~~-~~~-----~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~-~~~g~df~~~~~~~~i 273 (436)
++||-+...- +++ +.+.+++++.+.+||+.+|+.+|.+.... + .|++ |.+.-|-.. ...-..
T Consensus 177 VGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~------g----~~n~~y~~~fd~lt-k~nvdf 245 (403)
T COG3867 177 VGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAE------G----ENNSLYRWIFDELT-KRNVDF 245 (403)
T ss_pred eccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecC------C----CCCchhhHHHHHHH-HcCCCc
Confidence 9999987643 222 45777788889999999999998875421 0 0221 221111000 112345
Q ss_pred ceEEeecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHhcCCcEEEEecCCC---CCC-------------CCC--ChHH
Q 013811 274 DFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKS---RKD-------------PGY--STYQ 335 (436)
Q Consensus 274 D~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~---~~~-------------~g~--~~~~ 335 (436)
|+++.-+||. |... . .- |...+.+....++|-|+|.|.+.. .+. .++ +.+-
T Consensus 246 DVig~SyYpy-Whgt--l----~n----L~~nl~dia~rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQG 314 (403)
T COG3867 246 DVIGSSYYPY-WHGT--L----NN----LTTNLNDIASRYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQG 314 (403)
T ss_pred eEEeeecccc-ccCc--H----HH----HHhHHHHHHHHhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEec
Confidence 7899999997 4332 1 11 122222222348999999999872 110 122 3356
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccceeecc
Q 013811 336 RDVMFNTVYYKIYSSAKRGGAAAGGLFWQ 364 (436)
Q Consensus 336 r~~~~~~~~~~i~~~~~~~~~~~G~~~W~ 364 (436)
++.+.+++++.+..-.+ +...|.+||.
T Consensus 315 Qat~vrDvie~V~nvp~--~~GlGvFYWE 341 (403)
T COG3867 315 QATFVRDVIEAVKNVPK--SNGLGVFYWE 341 (403)
T ss_pred hhhHHHHHHHHHHhCCC--CCceEEEEec
Confidence 77888888877644321 2467999996
No 31
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=8.6e-10 Score=116.54 Aligned_cols=175 Identities=19% Similarity=0.341 Sum_probs=124.8
Q ss_pred eeCCeEEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHH
Q 013811 35 TRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLD 114 (436)
Q Consensus 35 v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD 114 (436)
-++..|.++|+++.+.|..++.... .++.+.++|+.||++|+|+||+-.| .|+.++|..|.|| |..+|
T Consensus 3 ~~~~~~~~dg~~~~l~gG~y~p~~~------p~~~w~ddl~~mk~~G~N~V~ig~f---aW~~~eP~eG~fd---f~~~D 70 (673)
T COG1874 3 YDGYSFIRDGRRILLYGGDYYPERW------PRETWMDDLRKMKALGLNTVRIGYF---AWNLHEPEEGKFD---FTWLD 70 (673)
T ss_pred ccccceeeCCceeEEeccccChHHC------CHHHHHHHHHHHHHhCCCeeEeeeE---EeeccCccccccC---cccch
Confidence 3567788999999999998754332 2378999999999999999999444 3778999999999 44666
Q ss_pred HH-HHHHHHcCCEEEEecccCCCCCCCh-----hhhhhHHhhc--CCC---CCCCCCCCCChHHHHHHHHHHHHHHhccc
Q 013811 115 FV-IAEARKYGIKLILSLANNYDSFGGK-----KQYVNWARSQ--GQF---LTSDDDFFRNPVVKGYYKNLIKTVLNRYN 183 (436)
Q Consensus 115 ~~-i~~a~~~Gi~vil~l~~~w~~~gg~-----~~y~~W~~~~--G~~---~~~~~~f~~~~~~~~~~~~~v~~iv~r~n 183 (436)
.. ++.|.+.||+||+.-.. .|+. ..||+|.... +.. ...+.-.++++-.++....+++.+++|.
T Consensus 71 ~~~l~~a~~~Gl~vil~t~P----~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~- 145 (673)
T COG1874 71 EIFLERAYKAGLYVILRTGP----TGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL- 145 (673)
T ss_pred HHHHHHHHhcCceEEEecCC----CCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH-
Confidence 66 99999999999998621 1111 1233333211 100 0122345678877888888888888884
Q ss_pred cccccccCCCCcEEEEEeecCCCCCCC---CChHHHHHHHHHHHHHhhccCC
Q 013811 184 TFTGIHYKDDPTIMAWELMNEPRCTSD---PSGRTIQAWITEMASYVKSIDR 232 (436)
Q Consensus 184 ~~tg~~yk~~p~I~~weL~NEp~~~~~---~~~~~~~~w~~~~~~~Ir~~Dp 232 (436)
|+++|+|++|.+-||-.+..+ .+...++.|+++-+..|+.++.
T Consensus 146 ------~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~ 191 (673)
T COG1874 146 ------YGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNE 191 (673)
T ss_pred ------hccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhh
Confidence 999999999999999988422 2345666788776666665543
No 32
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.11 E-value=5.9e-10 Score=116.37 Aligned_cols=283 Identities=16% Similarity=0.192 Sum_probs=129.5
Q ss_pred hhhHHHHHHHHH-HCCCCEEEEcc-ccCCCCCCCc-cCCC--CCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCCh
Q 013811 67 RSKVSTAFHEAA-SHGLTVARTWA-FSDGGYRPLQ-RSPG--SYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGK 141 (436)
Q Consensus 67 ~~~~~~~l~~l~-~~G~N~vRi~~-~~d~~~~~lq-~~pg--~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~ 141 (436)
+++++..|..++ ++|+..||+|. |+|.---..+ ...| .|| |..+|.++|...++||+.++.|.-.....
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f~p~~~--- 111 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGFMPMAL--- 111 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-SB-GGG---
T ss_pred hHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEechhhh---
Confidence 467888888887 79999999975 4442111111 1122 166 89999999999999999999985321110
Q ss_pred hhhhhHHhhcCCC-CCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCC-cEEEEEeecCCCCCCC---CChHHH
Q 013811 142 KQYVNWARSQGQF-LTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDP-TIMAWELMNEPRCTSD---PSGRTI 216 (436)
Q Consensus 142 ~~y~~W~~~~G~~-~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p-~I~~weL~NEp~~~~~---~~~~~~ 216 (436)
. .+.. .-......+.|.-.+.+.++++++++|.. ++ |+.+. .-..||++|||+.... .+.+.+
T Consensus 112 -------~-~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~---~R-YG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey 179 (486)
T PF01229_consen 112 -------A-SGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYI---DR-YGIEEVSTWYFEIWNEPDLKDFWWDGTPEEY 179 (486)
T ss_dssp -------B-SS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHH---HH-HHHHHHTTSEEEESS-TTSTTTSGGG-HHHH
T ss_pred -------c-CCCCccccccCCcCCcccHHHHHHHHHHHHHHHH---hh-cCCccccceeEEeCcCCCcccccCCCCHHHH
Confidence 0 0100 00000111223344555555555544410 00 54321 1125899999998532 234568
Q ss_pred HHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecCCCCCCCCC--ChhHh
Q 013811 217 QAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSS--NDRDQ 294 (436)
Q Consensus 217 ~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~--~~~~~ 294 (436)
.++++.++++||+.||+..|. +.++-. ...++ .....+|..... -.+||+|+|.|+....... .....
T Consensus 180 ~~ly~~~~~~iK~~~p~~~vG--Gp~~~~-~~~~~------~~~~l~~~~~~~-~~~DfiS~H~y~~~~~~~~~~~~~~~ 249 (486)
T PF01229_consen 180 FELYDATARAIKAVDPELKVG--GPAFAW-AYDEW------CEDFLEFCKGNN-CPLDFISFHSYGTDSAEDINENMYER 249 (486)
T ss_dssp HHHHHHHHHHHHHH-TTSEEE--EEEEET-T-THH------HHHHHHHHHHCT----SEEEEEEE-BESESE-SS-EEEE
T ss_pred HHHHHHHHHHHHHhCCCCccc--Cccccc-cHHHH------HHHHHHHHhcCC-CCCCEEEEEecccccccccchhHHhh
Confidence 889999999999999998763 322100 00000 011122333233 4579999999985432110 00011
Q ss_pred H---H-HHHHHHHHHHHHHHH--hcCCcEEEEecCCCCCCCC--CChHHHHHHHHHHHHHHHHHhhcCCCccceeecccc
Q 013811 295 L---S-FLNNWLDTHIQDAEH--ILRKPILLAEFGKSRKDPG--YSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLL 366 (436)
Q Consensus 295 ~---~-~~~~~i~~~~~~a~~--~~~kPv~i~EfG~~~~~~g--~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~ 366 (436)
+ . .+.+ +....+...+ ..++|+.++||........ .....+.+|+-. .+++... ..+.+..+|.+.
T Consensus 250 ~~~~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k---~lL~~~~--~~l~~~sywt~s 323 (486)
T PF01229_consen 250 IEDSRRLFPE-LKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAK---NLLSNDG--AFLDSFSYWTFS 323 (486)
T ss_dssp B--HHHHHHH-HHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH----HHHHGG--GT-SEEEES-SB
T ss_pred hhhHHHHHHH-HHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHH---HHHHhhh--hhhhhhhccchh
Confidence 1 1 1111 2222122222 1368899999987654311 111233333222 1223321 135678899999
Q ss_pred cCCC------CCCCCCceEEeCC
Q 013811 367 TEGM------DAFRDGYEIVLSQ 383 (436)
Q Consensus 367 ~~g~------~~~~dg~~i~~~~ 383 (436)
|-.. ...-.||++....
T Consensus 324 D~Fee~~~~~~pf~ggfGLlt~~ 346 (486)
T PF01229_consen 324 DRFEENGTPRKPFHGGFGLLTKL 346 (486)
T ss_dssp S---TTSS-SSSSSS-S-SEECC
T ss_pred hhhhccCCCCCceecchhhhhcc
Confidence 8432 2234678877653
No 33
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=1.5e-08 Score=104.79 Aligned_cols=152 Identities=20% Similarity=0.271 Sum_probs=119.9
Q ss_pred EEeeCCeEEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhh
Q 013811 33 IRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKG 112 (436)
Q Consensus 33 v~v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~ 112 (436)
|+-++..|.+||+++.+..-..|+... .++.+++.++.+|+.|+|+|-+++| |+-.+|+||.|+=...-.
T Consensus 20 v~yd~~~~~idG~r~~~isGsIHY~R~------~pe~W~~~i~k~k~~Gln~IqtYVf----Wn~Hep~~g~y~FsG~~D 89 (649)
T KOG0496|consen 20 VTYDKRSLLIDGQRFILISGSIHYPRS------TPEMWPDLIKKAKAGGLNVIQTYVF----WNLHEPSPGKYDFSGRYD 89 (649)
T ss_pred EeccccceeecCCeeEEEEeccccccC------ChhhhHHHHHHHHhcCCceeeeeee----cccccCCCCcccccchhH
Confidence 788899999999999999888887754 2478999999999999999999988 666789999998766667
Q ss_pred HHHHHHHHHHcCCEEEEecc----cCCCCCCChhhhhhHHhhc-CCCCCCCCCCC-CChHHHHHHHHHHHHHHhcccccc
Q 013811 113 LDFVIAEARKYGIKLILSLA----NNYDSFGGKKQYVNWARSQ-GQFLTSDDDFF-RNPVVKGYYKNLIKTVLNRYNTFT 186 (436)
Q Consensus 113 lD~~i~~a~~~Gi~vil~l~----~~w~~~gg~~~y~~W~~~~-G~~~~~~~~f~-~~~~~~~~~~~~v~~iv~r~n~~t 186 (436)
|-++|.+|++.|++|+|.+- ..| ++||.+ -|.... | ..|= +|+..+++++++++.|+...+
T Consensus 90 lvkFikl~~~~GLyv~LRiGPyIcaEw-~~GG~P---~wL~~~pg------~~~Rt~nepfk~~~~~~~~~iv~~mk--- 156 (649)
T KOG0496|consen 90 LVKFIKLIHKAGLYVILRIGPYICAEW-NFGGLP---WWLRNVPG------IVFRTDNEPFKAEMERWTTKIVPMMK--- 156 (649)
T ss_pred HHHHHHHHHHCCeEEEecCCCeEEecc-cCCCcc---hhhhhCCc------eEEecCChHHHHHHHHHHHHHHHHHH---
Confidence 77889999999999999875 335 358875 343321 2 1222 367888999999999998766
Q ss_pred ccccCCCCcEEEEEeecCCCC
Q 013811 187 GIHYKDDPTIMAWELMNEPRC 207 (436)
Q Consensus 187 g~~yk~~p~I~~weL~NEp~~ 207 (436)
..-+++---|++-++.||-..
T Consensus 157 ~L~~~qGGPIIl~QIENEYG~ 177 (649)
T KOG0496|consen 157 KLFASQGGPIILVQIENEYGN 177 (649)
T ss_pred HHHhhcCCCEEEEEeechhhH
Confidence 344666666888999999973
No 34
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.83 E-value=1.9e-08 Score=99.37 Aligned_cols=243 Identities=20% Similarity=0.249 Sum_probs=146.5
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCC
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQ 153 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~ 153 (436)
...+-..-+|.+=. -.+..|..+++.+|.|+ ++..|.+++.|+++||.|---..- |.. +.|.|....
T Consensus 27 ~~~~~~~~Fn~~t~--eN~~Kw~~~e~~~g~~~---~~~~D~~~~~a~~~g~~vrGH~Lv-W~~-----~~P~w~~~~-- 93 (320)
T PF00331_consen 27 YRELFAKHFNSVTP--ENEMKWGSIEPEPGRFN---FESADAILDWARENGIKVRGHTLV-WHS-----QTPDWVFNL-- 93 (320)
T ss_dssp HHHHHHHH-SEEEE--SSTTSHHHHESBTTBEE----HHHHHHHHHHHHTT-EEEEEEEE-ESS-----SS-HHHHTS--
T ss_pred HHHHHHHhCCeeee--ccccchhhhcCCCCccC---ccchhHHHHHHHhcCcceeeeeEE-Ecc-----cccceeeec--
Confidence 44444556887664 12234667788999888 888999999999999998522110 321 346777532
Q ss_pred CCCCCCCCCCCh---HHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC----ChHHH-----HHHHH
Q 013811 154 FLTSDDDFFRNP---VVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDP----SGRTI-----QAWIT 221 (436)
Q Consensus 154 ~~~~~~~f~~~~---~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~----~~~~~-----~~w~~ 221 (436)
.-++.. ..++...++++.+++| |++...|.+|++.|||-..... ....+ ..++.
T Consensus 94 ------~~~~~~~~~~~~~~l~~~I~~v~~~--------y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~ 159 (320)
T PF00331_consen 94 ------ANGSPDEKEELRARLENHIKTVVTR--------YKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIA 159 (320)
T ss_dssp ------TTSSBHHHHHHHHHHHHHHHHHHHH--------TTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHH
T ss_pred ------cCCCcccHHHHHHHHHHHHHHHHhH--------hccccceEEEEEeeecccCCCccccccCChhhhcccHhHHH
Confidence 012222 3788999999999999 9988889999999999876420 00111 24778
Q ss_pred HHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhhc--CCCCcceE--EeecCCCCCCCCCChhHhHHH
Q 013811 222 EMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANN--LIPGIDFA--TVHSYPDQWLSSSNDRDQLSF 297 (436)
Q Consensus 222 ~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~--~~~~iD~~--s~H~Y~~~w~~~~~~~~~~~~ 297 (436)
.+.+..|+.||+....+.. |+...+.. . ..-..++..+ ..-.||-+ .-|+-....
T Consensus 160 ~aF~~A~~~~P~a~L~~ND---y~~~~~~k----~--~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~------------ 218 (320)
T PF00331_consen 160 DAFRAAREADPNAKLFYND---YNIESPAK----R--DAYLNLVKDLKARGVPIDGIGLQSHFDAGYP------------ 218 (320)
T ss_dssp HHHHHHHHHHTTSEEEEEE---SSTTSTHH----H--HHHHHHHHHHHHTTHCS-EEEEEEEEETTSS------------
T ss_pred HHHHHHHHhCCCcEEEecc---ccccchHH----H--HHHHHHHHHHHhCCCccceechhhccCCCCC------------
Confidence 8899999999998776643 22211100 0 0000111111 11126654 445543321
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCC---CChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccC
Q 013811 298 LNNWLDTHIQDAEHILRKPILLAEFGKSRKDPG---YSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTE 368 (436)
Q Consensus 298 ~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g---~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~ 368 (436)
.+-|.+.++.... ++.||.|+|+.+...... ...+.++++++.++..+++.... .+.|.++|.+.|.
T Consensus 219 -~~~i~~~l~~~~~-~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~ 288 (320)
T PF00331_consen 219 -PEQIWNALDRFAS-LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDG 288 (320)
T ss_dssp -HHHHHHHHHHHHT-TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTT
T ss_pred -HHHHHHHHHHHHH-cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCC
Confidence 1224445555555 899999999998876421 12567778888888777665211 5889999999996
No 35
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=2.1e-07 Score=94.08 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=85.6
Q ss_pred EEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHH
Q 013811 40 FLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAE 119 (436)
Q Consensus 40 f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~ 119 (436)
|.+||.|+++.|.|.+-..... +-.+.+.++-.|+..++.|+|++|+|.. |.|.. |++-+.
T Consensus 330 fkin~~pvflkg~nwip~s~f~-dr~t~~~~~~LL~Sv~e~~MN~lRVWGG------------GvYEs------d~FY~l 390 (867)
T KOG2230|consen 330 FKINDEPVFLKGTNWIPVSMFR-DRENIAKTEFLLDSVAEVGMNMLRVWGG------------GVYES------DYFYQL 390 (867)
T ss_pred EEEcCcEEEeecCCccChHHHH-hhHHHHHHHHHHHHHHHhCcceEEEecC------------ccccc------hhHHHH
Confidence 4579999999999943222222 2234467788899999999999999863 22332 678899
Q ss_pred HHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEE
Q 013811 120 ARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAW 199 (436)
Q Consensus 120 a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~w 199 (436)
|.+.||.| |+++ .+ ++ .-+-+|.+.....+.-++.=+.| .+.||+|+.|
T Consensus 391 ad~lGilV-------WQD~----MF---AC---------AlYPt~~eFl~sv~eEV~yn~~R--------ls~HpSviIf 439 (867)
T KOG2230|consen 391 ADSLGILV-------WQDM----MF---AC---------ALYPTNDEFLSSVREEVRYNAMR--------LSHHPSVIIF 439 (867)
T ss_pred hhhcccee-------hhhh----HH---Hh---------hcccCcHHHHHHHHHHHHHHHHh--------hccCCeEEEE
Confidence 99999998 6553 11 11 11235666666677788888889 9999999999
Q ss_pred EeecCCCC
Q 013811 200 ELMNEPRC 207 (436)
Q Consensus 200 eL~NEp~~ 207 (436)
.--||-..
T Consensus 440 sgNNENEa 447 (867)
T KOG2230|consen 440 SGNNENEA 447 (867)
T ss_pred eCCCccHH
Confidence 99999864
No 36
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=2.7e-05 Score=72.61 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=126.4
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVN 146 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~ 146 (436)
.+++..||+.++..+. .||++. +| -..|..++.+|.+.|+++++-+.-.
T Consensus 62 a~~~~sDLe~l~~~t~-~IR~Y~-sD-----------------Cn~le~v~pAa~~~g~kv~lGiw~t------------ 110 (305)
T COG5309 62 ADQVASDLELLASYTH-SIRTYG-SD-----------------CNTLENVLPAAEASGFKVFLGIWPT------------ 110 (305)
T ss_pred HHHHHhHHHHhccCCc-eEEEee-cc-----------------chhhhhhHHHHHhcCceEEEEEeec------------
Confidence 3789999999999998 999976 33 2335678899999999999876210
Q ss_pred HHhhcCCCCCCCCCCCCChHHHHHHH-HHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHH
Q 013811 147 WARSQGQFLTSDDDFFRNPVVKGYYK-NLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMAS 225 (436)
Q Consensus 147 W~~~~G~~~~~~~~f~~~~~~~~~~~-~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~ 225 (436)
| +...... ..+.++.. |...+.|....++||.-...+.+..++.+.+.....
T Consensus 111 -----------------d-d~~~~~~~til~ay~~---------~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrs 163 (305)
T COG5309 111 -----------------D-DIHDAVEKTILSAYLP---------YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRS 163 (305)
T ss_pred -----------------c-chhhhHHHHHHHHHhc---------cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHH
Confidence 0 0111111 12222222 677788999999999988777678889999999999
Q ss_pred HhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecCCCCCCCCCChhHhHHHHHHHHHHH
Q 013811 226 YVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTH 305 (436)
Q Consensus 226 ~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~ 305 (436)
++++.+-+-+|++-. .| .. ...|| + .+...||+..|.-|. |.........-.|+.+-++ .
T Consensus 164 av~~agy~gpV~T~d-sw-~~-----~~~np------~-----l~~~SDfia~N~~aY-wd~~~~a~~~~~f~~~q~e-~ 223 (305)
T COG5309 164 AVKEAGYDGPVTTVD-SW-NV-----VINNP------E-----LCQASDFIAANAHAY-WDGQTVANAAGTFLLEQLE-R 223 (305)
T ss_pred HHHhcCCCCceeecc-cc-ee-----eeCCh------H-----Hhhhhhhhhcccchh-ccccchhhhhhHHHHHHHH-H
Confidence 999888877776432 22 11 01133 1 234557776665554 5543222222233322222 2
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCC--C---CChHHHHHHHHHHHHHH
Q 013811 306 IQDAEHILRKPILLAEFGKSRKDP--G---YSTYQRDVMFNTVYYKI 347 (436)
Q Consensus 306 ~~~a~~~~~kPv~i~EfG~~~~~~--g---~~~~~r~~~~~~~~~~i 347 (436)
++-+.. .+||++|+|.|.+.++. | .+.+.+..+++.++..+
T Consensus 224 vqsa~g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~ 269 (305)
T COG5309 224 VQSACG-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNAL 269 (305)
T ss_pred HHHhcC-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhh
Confidence 333322 34999999999998752 1 25567777777666543
No 37
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=6.7e-06 Score=78.80 Aligned_cols=116 Identities=23% Similarity=0.384 Sum_probs=84.3
Q ss_pred CCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc-CCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHH
Q 013811 94 GYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN-NYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYK 172 (436)
Q Consensus 94 ~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~-~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~ 172 (436)
.|..+++++|.|+ |+.-|.+++-|+++||.+-- |+ .|.. +.+.|... ++ .+-+...+.++
T Consensus 68 Kwe~i~p~~G~f~---Fe~AD~ia~FAr~h~m~lhG--HtLvW~~-----q~P~W~~~--------~e-~~~~~~~~~~e 128 (345)
T COG3693 68 KWEAIEPERGRFN---FEAADAIANFARKHNMPLHG--HTLVWHS-----QVPDWLFG--------DE-LSKEALAKMVE 128 (345)
T ss_pred ccccccCCCCccC---ccchHHHHHHHHHcCCeecc--ceeeecc-----cCCchhhc--------cc-cChHHHHHHHH
Confidence 4778899999998 88889999999999998621 11 0321 45666532 11 34467888999
Q ss_pred HHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC-------ChHHHHHHHHHHHHHhhccCCCCEEEe
Q 013811 173 NLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDP-------SGRTIQAWITEMASYVKSIDRNHLLEA 238 (436)
Q Consensus 173 ~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~-------~~~~~~~w~~~~~~~Ir~~Dp~~lV~v 238 (436)
+++..++.| ||+. +.+|++.|||-..... .+-.-.+|++......|+.||.....+
T Consensus 129 ~hI~tV~~r--------Ykg~--~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 129 EHIKTVVGR--------YKGS--VASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHh--------ccCc--eeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 999999999 9997 8899999999873221 111234567777888899999876554
No 38
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.50 E-value=3e-06 Score=80.31 Aligned_cols=143 Identities=20% Similarity=0.165 Sum_probs=79.9
Q ss_pred EEEEEeecCCCCCCC--CChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhhcC-CCC
Q 013811 196 IMAWELMNEPRCTSD--PSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNL-IPG 272 (436)
Q Consensus 196 I~~weL~NEp~~~~~--~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~-~~~ 272 (436)
+-.+..+|||..... .+.+...+..+++.+.+|. ++..|......+-+...+. +..+-.+|..... .-.
T Consensus 66 ~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~sPa~~~~~~~~~~------g~~Wl~~F~~~~~~~~~ 137 (239)
T PF11790_consen 66 SKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLGSPAVAFTNGGTPG------GLDWLSQFLSACARGCR 137 (239)
T ss_pred ccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEECCeecccCCCCCC------ccHHHHHHHHhcccCCC
Confidence 345678899998653 2445555555566666664 4333322111111100000 0112234555443 458
Q ss_pred cceEEeecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHHhh
Q 013811 273 IDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAK 352 (436)
Q Consensus 273 iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g~~~~~r~~~~~~~~~~i~~~~~ 352 (436)
+||+++|.|... ... +..+++...+.++|||+|||||........+.+++..|+++++..+-+
T Consensus 138 ~D~iavH~Y~~~----------~~~----~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~--- 200 (239)
T PF11790_consen 138 VDFIAVHWYGGD----------ADD----FKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDS--- 200 (239)
T ss_pred ccEEEEecCCcC----------HHH----HHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhc---
Confidence 999999999322 112 233444444457899999999987643345677888888888765422
Q ss_pred cCCCccceeecc
Q 013811 353 RGGAAAGGLFWQ 364 (436)
Q Consensus 353 ~~~~~~G~~~W~ 364 (436)
...+.++.+..
T Consensus 201 -~~~VeryawF~ 211 (239)
T PF11790_consen 201 -QPYVERYAWFG 211 (239)
T ss_pred -CCCeeEEEecc
Confidence 24556666555
No 39
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.41 E-value=8.9e-06 Score=72.51 Aligned_cols=139 Identities=18% Similarity=0.296 Sum_probs=95.9
Q ss_pred chhhhHHHHHHHHHHCCCCEEEE-ccccCC-C-CC-CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCC
Q 013811 65 SQRSKVSTAFHEAASHGLTVART-WAFSDG-G-YR-PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGG 140 (436)
Q Consensus 65 ~~~~~~~~~l~~l~~~G~N~vRi-~~~~d~-~-~~-~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg 140 (436)
.+.++++++|+.|+++|+++|=+ |.--.+ . ++ .+ .++.+....-+.|+.++++|+++||+|++.|...-
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~--~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~----- 89 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKL--SPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP----- 89 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccc--cCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc-----
Confidence 34588999999999999999855 221111 0 11 11 12334444567889999999999999999985321
Q ss_pred hhhhhhHHhhcCCCCCCCCCCCCChHH-HHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHH
Q 013811 141 KKQYVNWARSQGQFLTSDDDFFRNPVV-KGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAW 219 (436)
Q Consensus 141 ~~~y~~W~~~~G~~~~~~~~f~~~~~~-~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w 219 (436)
.|... .+++. .+.-+..++++.++ |++||++-+|=|-.|+..... ...+.
T Consensus 90 -----~~w~~------------~~~~~~~~~~~~v~~el~~~--------yg~h~sf~GWYip~E~~~~~~----~~~~~ 140 (166)
T PF14488_consen 90 -----DYWDQ------------GDLDWEAERNKQVADELWQR--------YGHHPSFYGWYIPYEIDDYNW----NAPER 140 (166)
T ss_pred -----hhhhc------------cCHHHHHHHHHHHHHHHHHH--------HcCCCCCceEEEecccCCccc----chHHH
Confidence 11110 12222 22234577788888 999999999999999987642 33556
Q ss_pred HHHHHHHhhccCCCCEEEeC
Q 013811 220 ITEMASYVKSIDRNHLLEAG 239 (436)
Q Consensus 220 ~~~~~~~Ir~~Dp~~lV~vG 239 (436)
.+.+.+++|++.|+.+|++.
T Consensus 141 ~~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 141 FALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHHHHhCCCCCeEEe
Confidence 68888999999998888864
No 40
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1.3e-08 Score=101.30 Aligned_cols=329 Identities=23% Similarity=0.326 Sum_probs=178.8
Q ss_pred cCCCCCEEeeCCeEE-ECCeE------EEEEeecccccccccCCc--chhhhHHHHHHHHHHCCCCEEEE-ccc---cCC
Q 013811 27 EAGDGFIRTRGSHFL-LNGNL------YFANGFNAYWLMYVASDP--SQRSKVSTAFHEAASHGLTVART-WAF---SDG 93 (436)
Q Consensus 27 ~~~~~fv~v~g~~f~-~nGkp------~~~~G~N~~~~~~~~~~~--~~~~~~~~~l~~l~~~G~N~vRi-~~~---~d~ 93 (436)
-+..+||.++..++. |||++ +...|.|.+++....... .+-..+...+..++.||....|| |.. +|.
T Consensus 32 le~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~~~pdn 111 (587)
T COG3934 32 LEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGEQSPDN 111 (587)
T ss_pred cccccCccceeEEEEEecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCCCCccc
Confidence 355678999887755 89999 677777764443321100 01122223333344444444444 110 000
Q ss_pred -CCCCCccCCC-CCChhhhh--hHHHHHHHHHHcCCE---EEEecccCCCCCCChhhhhhHHhhc-----CCCCC-----
Q 013811 94 -GYRPLQRSPG-SYNEQMFK--GLDFVIAEARKYGIK---LILSLANNYDSFGGKKQYVNWARSQ-----GQFLT----- 156 (436)
Q Consensus 94 -~~~~lq~~pg-~~~~~~l~--~lD~~i~~a~~~Gi~---vil~l~~~w~~~gg~~~y~~W~~~~-----G~~~~----- 156 (436)
-+...-..|+ .|.++.+. ++|-.|..-.-.+.- ...+..+.|++.+++..|.+|.... |.+..
T Consensus 112 ~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp~~~~ 191 (587)
T COG3934 112 VIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASPWPQY 191 (587)
T ss_pred cccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCccccc
Confidence 0000000111 23444444 444455554555552 2234445677788999999987531 22211
Q ss_pred --CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC-----ChHHHHHHHHHHH-----
Q 013811 157 --SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDP-----SGRTIQAWITEMA----- 224 (436)
Q Consensus 157 --~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~-----~~~~~~~w~~~~~----- 224 (436)
....++.|-.....|..|...++.|+.+.+|.+|.+.|++++|...|++...... .....+.|+..+.
T Consensus 192 ~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~~lal~~ggd 271 (587)
T COG3934 192 APYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWIRLALDTGGD 271 (587)
T ss_pred CCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhhhhhhHHhhcCC
Confidence 1123344555566677777788899999999999999999999999999876532 2345667766521
Q ss_pred -HHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecCCCCCCCCC--Ch-----hHhHH
Q 013811 225 -SYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSS--ND-----RDQLS 296 (436)
Q Consensus 225 -~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~--~~-----~~~~~ 296 (436)
+.|.-++--|+.+.+++..|.+... . --.++....+.+|+-++|..+..|..-. ++ +...-
T Consensus 272 GaLiwclsdf~~gsdd~ey~w~p~el---------~--fgiIradgpek~~a~~~~~fsn~~kdI~~~Sfq~p~~e~~ei 340 (587)
T COG3934 272 GALIWCLSDFHLGSDDSEYTWGPMEL---------E--FGIIRADGPEKIDAMTLHIFSNNWKDISMCSFQPPTYEAGEI 340 (587)
T ss_pred ceEEEEecCCccCCCCCCCccccccc---------e--eeeecCCCchhhhHHHHHHhccccceeeeecccCccccccee
Confidence 1233333333343333322221110 0 0012334456677778888887664321 00 11000
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCCCCCC----CCCChHHHHHHHHHHHHHHHHHhhcCCCccceeeccccc
Q 013811 297 FLNNWLDTHIQDAEHILRKPILLAEFGKSRKD----PGYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLT 367 (436)
Q Consensus 297 ~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~----~g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~ 367 (436)
.-..++++|+..+.+ +++|+++.+++..-.. ++.++..|+..++.+++.-.-.+.-++.-+|...|.+..
T Consensus 341 kp~~~va~~~fv~e~-~~~~Lf~rv~nl~f~~~~~~~gqpt~~rd~d~~~~l~d~kllmipsgpt~g~Ttw~~ll 414 (587)
T COG3934 341 KPRDYVAQHIFVAER-LNKPLFIRVFNLIFDGRQFTPGQPTTYRDRDYKTMLDDAKLLMIPSGPTAGVTTWAWLL 414 (587)
T ss_pred cchHhhhhceecHhh-hccchhhhcchhHhhhhhhcCCCceEEeccchhhcCCchhheeecCCcccchhHHHHHh
Confidence 112346677777777 8999999999976542 455556677777765543222222234667888888864
No 41
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=98.03 E-value=0.0011 Score=66.13 Aligned_cols=266 Identities=18% Similarity=0.256 Sum_probs=112.4
Q ss_pred HHCCCCEEEEccccC----C-------CC---CCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhh
Q 013811 78 ASHGLTVARTWAFSD----G-------GY---RPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQ 143 (436)
Q Consensus 78 ~~~G~N~vRi~~~~d----~-------~~---~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 143 (436)
+-+|+|.+|.-+-.- + .| +.+.+..|.||-+.=..=..++.+|+++|+..++-+.|..
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFSNSP-------- 128 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFSNSP-------- 128 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE-SSS--------
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEeecCC--------
Confidence 469999999955310 0 01 1233445666632222334689999999999888766542
Q ss_pred hhhHHhhcCCCCCCC-CCCCCChHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeecCCCCCCC--------CCh
Q 013811 144 YVNWARSQGQFLTSD-DDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDD-PTIMAWELMNEPRCTSD--------PSG 213 (436)
Q Consensus 144 y~~W~~~~G~~~~~~-~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~-p~I~~weL~NEp~~~~~--------~~~ 213 (436)
|-|+...|...... ..---.++..+.|.+|+..++++ |+.+ =.|-..+.+|||..... .+.
T Consensus 129 -P~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~--------~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~ 199 (384)
T PF14587_consen 129 -PWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKH--------YKKWGINFDYISPFNEPQWNWAGGSQEGCHFTN 199 (384)
T ss_dssp --GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHH--------HHCTT--EEEEE--S-TTS-GG--SS-B----H
T ss_pred -CHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHH--------HHhcCCccceeCCcCCCCCCCCCCCcCCCCCCH
Confidence 22333223211111 11112356788999999999999 7554 24667889999986521 134
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEeCCCccc----CCCC--Ccc-----ccCCCCCcccchhhhhcCCCCc-ceEEeecC
Q 013811 214 RTIQAWITEMASYVKSIDRNHLLEAGLEGFY----GQST--PQR-----KRVNPNLDIGTDFVANNLIPGI-DFATVHSY 281 (436)
Q Consensus 214 ~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~----~~~~--~~~-----~~~np~~~~g~df~~~~~~~~i-D~~s~H~Y 281 (436)
+.....++.+.+.+++...+..|+++.++-+ .... +.. .-++|. ...++. ..++| .+++-|.|
T Consensus 200 ~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~---s~~yi~--~l~~v~~~i~~HsY 274 (384)
T PF14587_consen 200 EEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPD---SSTYIG--DLPNVPNIISGHSY 274 (384)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS---HHHHHHSTT---STT--T--T-TTEEEEEEE--T
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchhhhhhHHhhcCCC---chhhhh--ccccchhheeeccc
Confidence 6778889999999999888888887665432 2100 000 001111 011111 23444 37899999
Q ss_pred CCCCCCCCChhHhHHHHHHHHHHHHHHHHHhc--CCcEEEEecCCCCCCCC---CChHHHHHHHHHHH---HHHHHHhhc
Q 013811 282 PDQWLSSSNDRDQLSFLNNWLDTHIQDAEHIL--RKPILLAEFGKSRKDPG---YSTYQRDVMFNTVY---YKIYSSAKR 353 (436)
Q Consensus 282 ~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~--~kPv~i~EfG~~~~~~g---~~~~~r~~~~~~~~---~~i~~~~~~ 353 (436)
|...+ ...+.- +++.+....+.. +..++.+||.+-.+..+ .....|+-.++..+ ..|..-+-
T Consensus 275 ---wt~~~--~~~l~~----~R~~~~~~~~~~~~~~~~wqtE~~il~~~~~~~~~~g~~~~~~m~~aLy~arviH~DL~- 344 (384)
T PF14587_consen 275 ---WTDSP--WDDLRD----IRKQLADKLDKYSPGLKYWQTEYCILGDNYEIIEGGGYDRDLGMDTALYVARVIHNDLT- 344 (384)
T ss_dssp ---T-SSS--HHHHHH----HHHHHHHHHHTTSS--EEEE----S----TTT-SSS-HHHHHHH--HHHHHHHHHHHHH-
T ss_pred ---ccCCC--HHHHHH----HHHHHHHHHHhhCcCCceeeeeeeeccCCcccccCCCcccchhHHHHHHHHHHHHhhhh-
Confidence 65332 111222 223333332335 78899999998766421 11122444443222 11222222
Q ss_pred CCCccceeecccccCCCCCCCCCc
Q 013811 354 GGAAAGGLFWQLLTEGMDAFRDGY 377 (436)
Q Consensus 354 ~~~~~G~~~W~~~~~g~~~~~dg~ 377 (436)
......|-+|.-... ..|.||.
T Consensus 345 ~anassW~wW~a~~~--~~ykdgl 366 (384)
T PF14587_consen 345 YANASSWQWWTAISP--YDYKDGL 366 (384)
T ss_dssp TS--SEEEEEESEES--S--SSSS
T ss_pred hcccchhHHHHHhcc--ccccCce
Confidence 125667778877654 2467885
No 42
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=0.00099 Score=64.72 Aligned_cols=238 Identities=17% Similarity=0.176 Sum_probs=119.2
Q ss_pred hHHHHHHH-HHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhH
Q 013811 69 KVSTAFHE-AASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNW 147 (436)
Q Consensus 69 ~~~~~l~~-l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W 147 (436)
.++..|.. .-++|+..+|+.+-+...+ + .|.+|.. ...| ..-.-+..+|++|+-+..+. |.|
T Consensus 66 ~l~t~Fgng~~~lg~si~Rv~I~~ndfs--l---~g~~d~w-~kel-s~Ak~~in~g~ivfASPWsp----------Pa~ 128 (433)
T COG5520 66 QLETLFGNGANQLGFSILRVPIDSNDFS--L---GGSADNW-YKEL-STAKSAINPGMIVFASPWSP----------PAS 128 (433)
T ss_pred HHHHHhcCCccccCceEEEEEecccccc--c---CCCcchh-hhhc-ccchhhcCCCcEEEecCCCC----------chh
Confidence 34444433 2358999999976422111 1 1222211 1111 11123678999998877432 344
Q ss_pred HhhcCCCCCC-CCCCCCChHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeecCCCCCCCC-----ChHHHHHHH
Q 013811 148 ARSQGQFLTS-DDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDD-PTIMAWELMNEPRCTSDP-----SGRTIQAWI 220 (436)
Q Consensus 148 ~~~~G~~~~~-~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~-p~I~~weL~NEp~~~~~~-----~~~~~~~w~ 220 (436)
++..+.-... ... -.++.-..|.+++...|.. ++++ -.+-+..+.|||....+. +.+...+++
T Consensus 129 Mktt~~~ngg~~g~--Lk~e~Ya~yA~~l~~fv~~--------m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~ 198 (433)
T COG5520 129 MKTTNNRNGGNAGR--LKYEKYADYADYLNDFVLE--------MKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFM 198 (433)
T ss_pred hhhccCcCCccccc--cchhHhHHHHHHHHHHHHH--------HHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHH
Confidence 4432210000 001 1234556677777777777 7776 457789999999876321 334444444
Q ss_pred HHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecCCCCCCCCCChhHhHHHHHH
Q 013811 221 TEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNN 300 (436)
Q Consensus 221 ~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~ 300 (436)
+ ++.+++..+.-|.+-. .+. ++|.+.. .-+....+..++|+++.|.|...-... + .
T Consensus 199 ~---qyl~si~~~~rV~~pe-s~~---------~~~~~~d-p~lnDp~a~a~~~ilg~H~Ygg~v~~~---p-------~ 254 (433)
T COG5520 199 R---QYLASINAEMRVIIPE-SFK---------DLPNMSD-PILNDPKALANMDILGTHLYGGQVSDQ---P-------Y 254 (433)
T ss_pred H---HhhhhhccccEEecch-hcc---------ccccccc-ccccCHhHhcccceeEeeecccccccc---h-------h
Confidence 3 3344433333333221 111 1121100 001112345789999999997652211 0 0
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccceeeccccc
Q 013811 301 WLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLT 367 (436)
Q Consensus 301 ~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~ 367 (436)
.+ ..+. ..+|-|+++|.=....+++..+ | +.+. +...+.....++ +..|+.+|-+..
T Consensus 255 ~l----ak~~-~~gKdlwmte~y~~esd~~s~d--r-~~~~-~~~hi~~gm~~g-g~~ayv~W~i~~ 311 (433)
T COG5520 255 PL----AKQK-PAGKDLWMTECYPPESDPNSAD--R-EALH-VALHIHIGMTEG-GFQAYVWWNIRL 311 (433)
T ss_pred hH----hhCC-CcCCceEEeecccCCCCCCcch--H-HHHH-HHHHHHhhcccc-CccEEEEEEEee
Confidence 01 1111 2489999999877666554332 2 2222 333343333443 678999998864
No 43
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.67 E-value=0.0031 Score=62.11 Aligned_cols=207 Identities=18% Similarity=0.313 Sum_probs=112.2
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCC--CC-CCccC----CCC-CChhhhhhHHHHHHHHHHcCCEEEEecc-cC-C
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGG--YR-PLQRS----PGS-YNEQMFKGLDFVIAEARKYGIKLILSLA-NN-Y 135 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~--~~-~lq~~----pg~-~~~~~l~~lD~~i~~a~~~Gi~vil~l~-~~-w 135 (436)
+++.+++.|+.|+++|+|+|=+-+...|. |+ .+.|. .|. .....++-|..+|++|+++||.|.--+- .. .
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 45789999999999999988664433221 21 12221 111 1112477899999999999999976541 10 0
Q ss_pred CCCCC-hhhhhhHHh--hcCCCCC----CCCCCCC---ChHHHHHHHHHHHHHHhccccccccccCCC---CcEEEEEe-
Q 013811 136 DSFGG-KKQYVNWAR--SQGQFLT----SDDDFFR---NPVVKGYYKNLIKTVLNRYNTFTGIHYKDD---PTIMAWEL- 201 (436)
Q Consensus 136 ~~~gg-~~~y~~W~~--~~G~~~~----~~~~f~~---~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~---p~I~~weL- 201 (436)
...+. ....+.|.. ..|.... .....|- +|++++...+.+++||++-. +.|+.+-+. |...+++.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIhlDdy~yp~~~~g~~~~ 175 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIHLDDYFYPPPSFGYDFP 175 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEEecccccccccCCCCCc
Confidence 00000 112344422 1111110 1223333 57899999999999999821 333322211 11000000
Q ss_pred ----e-c----CCCC-CCC-----CChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhh
Q 013811 202 ----M-N----EPRC-TSD-----PSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVA 266 (436)
Q Consensus 202 ----~-N----Ep~~-~~~-----~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~ 266 (436)
. . +|.. ..+ .-.+.+..+++++.+.||+++|+..+++...|.++.+. +-.+ +|...
T Consensus 176 ~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~~~~y------~~~~---qD~~~ 246 (311)
T PF02638_consen 176 DVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIWNSAY------DDYY---QDWRN 246 (311)
T ss_pred cHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecchhhhh------hhee---ccHHH
Confidence 0 0 0000 000 01356777889999999999999999876555443211 1111 23333
Q ss_pred hcCCCCcceEEeecCC
Q 013811 267 NNLIPGIDFATVHSYP 282 (436)
Q Consensus 267 ~~~~~~iD~~s~H~Y~ 282 (436)
-.....+|++.+-.|-
T Consensus 247 W~~~G~iD~i~Pq~Y~ 262 (311)
T PF02638_consen 247 WLKEGYIDYIVPQIYW 262 (311)
T ss_pred HHhcCCccEEEeeecc
Confidence 3345789999999993
No 44
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.30 E-value=0.083 Score=51.91 Aligned_cols=272 Identities=16% Similarity=0.226 Sum_probs=139.3
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCC---CCC---CccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCC
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGG---YRP---LQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFG 139 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~---~~~---lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~g 139 (436)
+.+.+++.|+.+++.|+|+|=|=+-.|.+ |+. +....|. .......+..+++.++++|||+|--+..+-+..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga-~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGA-VKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccc-ccccccCHHHHHHHHHHCCCEEEEEEEEecChHH
Confidence 34689999999999999999985544322 110 1011121 1122466889999999999999888765432211
Q ss_pred ChhhhhhHHhh--cCCCC-CCCCCCCCC---hHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCC-------
Q 013811 140 GKKQYVNWARS--QGQFL-TSDDDFFRN---PVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPR------- 206 (436)
Q Consensus 140 g~~~y~~W~~~--~G~~~-~~~~~f~~~---~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~------- 206 (436)
.. ..+.|+.. .|... .....-|.| ++++++..+..+++++. .+.. |. ++-.==|.
T Consensus 90 a~-~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdE--------Iq-fDYIRFP~~~~~~~l 157 (316)
T PF13200_consen 90 AE-AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDE--------IQ-FDYIRFPDEGRLSGL 157 (316)
T ss_pred hh-hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--CCCE--------EE-eeeeecCCCCccccc
Confidence 10 12445431 12111 112233554 46667667777776653 1111 11 22111111
Q ss_pred -CCCCC----ChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecC
Q 013811 207 -CTSDP----SGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSY 281 (436)
Q Consensus 207 -~~~~~----~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y 281 (436)
..... ..+.+..+++.+.+.++..+ ..|++..-|+-.... .....|+++.. ..+.+|+++.=.|
T Consensus 158 ~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~--v~vSaDVfG~~~~~~-------~~~~iGQ~~~~--~a~~vD~IsPMiY 226 (316)
T PF13200_consen 158 DYSENDTEESRVDAITDFLAYAREELHPYG--VPVSADVFGYVAWSP-------DDMGIGQDFEK--IAEYVDYISPMIY 226 (316)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHhHcC--CCEEEEecccccccC-------CCCCcCCCHHH--HhhhCCEEEeccc
Confidence 10000 13578889999999888764 566654433211100 01235677654 3578999999999
Q ss_pred CCCCCCCC-----ChhHhHHHHHHHHHHHHHHHHHhcCCcE---EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhc
Q 013811 282 PDQWLSSS-----NDRDQLSFLNNWLDTHIQDAEHILRKPI---LLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKR 353 (436)
Q Consensus 282 ~~~w~~~~-----~~~~~~~~~~~~i~~~~~~a~~~~~kPv---~i~EfG~~~~~~g~~~~~r~~~~~~~~~~i~~~~~~ 353 (436)
|.+|.++. +..+..+.....+....+......++|+ +|.-|-...... .-..+-.+..+.-+.++.++
T Consensus 227 PSh~~~g~~g~~~P~~~PY~~v~~~~~~~~~~~~~~~~~~~~RPWlQ~Ft~~~~~~-~~~~Yg~~ev~aQI~A~~d~--- 302 (316)
T PF13200_consen 227 PSHYGPGFFGIDKPDLEPYEIVYRSLKRAKERLRGLEGPAIIRPWLQDFTASWLGK-NYKEYGPEEVRAQIQALKDA--- 302 (316)
T ss_pred ccccCcccCCCCCcccChHHHHHHHHHHHHHHhhcCCCCCeEeccccccccccccc-CccccCHHHHHHHHHHHHHc---
Confidence 99987641 1112233344444433333222001222 345554432111 00112223333333444333
Q ss_pred CCCccceeeccccc
Q 013811 354 GGAAAGGLFWQLLT 367 (436)
Q Consensus 354 ~~~~~G~~~W~~~~ 367 (436)
+..||++|.-..
T Consensus 303 --g~~~~llWna~n 314 (316)
T PF13200_consen 303 --GIEGWLLWNASN 314 (316)
T ss_pred --CCCeEEEECCCC
Confidence 788999998653
No 45
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.13 E-value=0.021 Score=59.77 Aligned_cols=253 Identities=17% Similarity=0.183 Sum_probs=122.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEcccc-CC---CCCCCccCCC-----CCC--hhhhhhHHHHHHHHHHc--CCEEEEecccC
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFS-DG---GYRPLQRSPG-----SYN--EQMFKGLDFVIAEARKY--GIKLILSLANN 134 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~-d~---~~~~lq~~pg-----~~~--~~~l~~lD~~i~~a~~~--Gi~vil~l~~~ 134 (436)
+.++..|. =..+|++.+|+.+.+ |. .| .+...|+ .|+ .+-.+..=-+|.+|.+. +|+++.+.
T Consensus 101 ~ll~~~F~-~~G~g~s~~R~pIgssDfs~~~Y-ty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--- 175 (496)
T PF02055_consen 101 ELLRSLFS-EDGIGYSLLRVPIGSSDFSTRPY-TYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--- 175 (496)
T ss_dssp HHHHHHHS-TTTT---EEEEEES--SSSSS----ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE---
T ss_pred HHHHHHhh-cCCceEEEEEeeccCcCCcCCcc-cccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec---
Confidence 33555555 245899999997642 21 11 1111222 122 11111112355555443 58888776
Q ss_pred CCCCCChhhhhhHHhhcCCCCCCCCCCCC---ChHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeecCCCCCCC
Q 013811 135 YDSFGGKKQYVNWARSQGQFLTSDDDFFR---NPVVKGYYKNLIKTVLNRYNTFTGIHYKDD-PTIMAWELMNEPRCTSD 210 (436)
Q Consensus 135 w~~~gg~~~y~~W~~~~G~~~~~~~~f~~---~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~-p~I~~weL~NEp~~~~~ 210 (436)
|.. |.|++..+.-.. ..... .++..+.|.+|+...++. |+.+ =.|-+..+.|||.....
T Consensus 176 WSp-------P~WMKtn~~~~g--~g~l~g~~~~~y~~~yA~Y~vkfi~a--------Y~~~GI~i~aiT~QNEP~~~~~ 238 (496)
T PF02055_consen 176 WSP-------PAWMKTNGSMNG--GGSLKGSLGDEYYQAYADYFVKFIQA--------YKKEGIPIWAITPQNEPDNGSD 238 (496)
T ss_dssp S----------GGGBTTSSSCS--S-BBSCGTTSHHHHHHHHHHHHHHHH--------HHCTT--ESEEESSSSCCGGGS
T ss_pred CCC-------CHHHccCCcCcC--CCccCCCCCchhHHHHHHHHHHHHHH--------HHHCCCCeEEEeccCCCCCCCC
Confidence 432 667765432110 01111 246778888999999988 8887 34777888999985311
Q ss_pred ---------CChHHHHHHHHH-HHHHhhccCC--CCEEEeCCCcccCCCCCccccCCCCCcccchhhh-hcCCCCcceEE
Q 013811 211 ---------PSGRTIQAWITE-MASYVKSIDR--NHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVA-NNLIPGIDFAT 277 (436)
Q Consensus 211 ---------~~~~~~~~w~~~-~~~~Ir~~Dp--~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~-~~~~~~iD~~s 277 (436)
.+++....|++. +..++++..+ +.-|.+....... .|.|. ..... ..+...+|-++
T Consensus 239 ~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~---------~~~~~--~~il~d~~A~~yv~GiA 307 (496)
T PF02055_consen 239 PNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDN---------LPDYA--DTILNDPEAAKYVDGIA 307 (496)
T ss_dssp TT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGG---------TTHHH--HHHHTSHHHHTTEEEEE
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcc---------cchhh--hhhhcChhhHhheeEEE
Confidence 146778888875 8888988776 4444332221111 11110 00001 12346899999
Q ss_pred eecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCC----CChHHHHHHHHHHHHHHHHHhhc
Q 013811 278 VHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPG----YSTYQRDVMFNTVYYKIYSSAKR 353 (436)
Q Consensus 278 ~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g----~~~~~r~~~~~~~~~~i~~~~~~ 353 (436)
+|.|.+.- .... |.+ + -.+..+|.++.+|-.......+ ...-.|.+. ....|...+..
T Consensus 308 ~HwY~g~~-----~~~~-------l~~-~--h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~---y~~~ii~~lnn 369 (496)
T PF02055_consen 308 FHWYGGDP-----SPQA-------LDQ-V--HNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAER---YAHDIIGDLNN 369 (496)
T ss_dssp EEETTCS------HCHH-------HHH-H--HHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHH---HHHHHHHHHHT
T ss_pred EECCCCCc-----hhhH-------HHH-H--HHHCCCcEEEeeccccCCCCcccccccccHHHHHH---HHHHHHHHHHh
Confidence 99996531 0011 111 1 1113689999999754322111 111122221 12223445544
Q ss_pred CCCccceeeccccc--CCCCCC
Q 013811 354 GGAAAGGLFWQLLT--EGMDAF 373 (436)
Q Consensus 354 ~~~~~G~~~W~~~~--~g~~~~ 373 (436)
...||+.|.+.- +|.+.|
T Consensus 370 --~~~gw~~WNl~LD~~GGP~~ 389 (496)
T PF02055_consen 370 --WVSGWIDWNLALDENGGPNW 389 (496)
T ss_dssp --TEEEEEEEESEBETTS---T
T ss_pred --hceeeeeeeeecCCCCCCcc
Confidence 578999999864 333445
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.64 E-value=0.014 Score=50.04 Aligned_cols=107 Identities=16% Similarity=0.285 Sum_probs=68.5
Q ss_pred HHHHHHHHHHCCCCEEEEccccCCCC---C-CCc-cCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh
Q 013811 70 VSTAFHEAASHGLTVARTWAFSDGGY---R-PLQ-RSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d~~~---~-~lq-~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y 144 (436)
.++.++.+++.|+|+|-+++-+.+++ | .+. ..|+ .. .+.|-++|++|++.||+|++.+.-.|+.. -....
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~-L~---~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~~~H 76 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPG-LK---RDLLGEQVEACHERGIRVPAYFDFSWDED-AAERH 76 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCC-CC---cCHHHHHHHHHHHCCCEEEEEEeeecChH-HHHhC
Confidence 35678899999999999976544332 2 121 1333 12 46678999999999999999986555432 12356
Q ss_pred hhHHhh--cCCCCC----CCCCCC---CChHHHHHHHHHHHHHHhc
Q 013811 145 VNWARS--QGQFLT----SDDDFF---RNPVVKGYYKNLIKTVLNR 181 (436)
Q Consensus 145 ~~W~~~--~G~~~~----~~~~f~---~~~~~~~~~~~~v~~iv~r 181 (436)
|.|..- .|.+.. ....++ -|...++.....++++++|
T Consensus 77 PeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 77 PEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred CceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 777652 233110 011122 1456778889999999999
No 47
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=96.52 E-value=0.00099 Score=65.21 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHcCCEEEEecc
Q 013811 110 FKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 110 l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
..+.|.+.+-|++-|+++|+.|.
T Consensus 108 ~~rwd~l~~F~~~tG~~liFgLN 130 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIFGLN 130 (319)
T ss_dssp ----HHHHHHHHHHT-EEEEEE-
T ss_pred hhHHHHHHHHHHHhCCEEEEEec
Confidence 46789999999999999999994
No 48
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.47 E-value=0.057 Score=57.39 Aligned_cols=147 Identities=17% Similarity=0.199 Sum_probs=82.7
Q ss_pred chhhhHHHHHHHHHHCCCCEEEEccccCC------CCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc-
Q 013811 65 SQRSKVSTAFHEAASHGLTVARTWAFSDG------GYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA- 132 (436)
Q Consensus 65 ~~~~~~~~~l~~l~~~G~N~vRi~~~~d~------~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~- 132 (436)
++-..+.+.|+.++++|+|+|=+....+. +|. .+.+.-| ..+.|..+|++|+++||+||+++.
T Consensus 108 G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G-----~~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 108 GTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYG-----GPDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccC-----CHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 34456777899999999999999443211 121 1122222 246788999999999999999985
Q ss_pred cCCCCCC-ChhhhhhHHhhcCC-CCCCCCCCCCCh---HHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 013811 133 NNYDSFG-GKKQYVNWARSQGQ-FLTSDDDFFRNP---VVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC 207 (436)
Q Consensus 133 ~~w~~~g-g~~~y~~W~~~~G~-~~~~~~~f~~~~---~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~ 207 (436)
|+....+ ..+.|..|...... .... .-=|.++ .+++.+.+.++..++. |+=|- +-+++......
T Consensus 183 NH~~~~~~~~~~~~~y~~~~~~~~wg~-~~n~~~~~~~~vr~~i~~~~~~W~~e--------~~iDG--fR~D~~~~~~~ 251 (542)
T TIGR02402 183 NHFGPEGNYLPRYAPYFTDRYSTPWGA-AINFDGPGSDEVRRYILDNALYWLRE--------YHFDG--LRLDAVHAIAD 251 (542)
T ss_pred CCCCCccccccccCccccCCCCCCCCC-ccccCCCcHHHHHHHHHHHHHHHHHH--------hCCcE--EEEeCHHHhcc
Confidence 3211101 01111112110000 0000 1113456 8888888888888876 54331 11233222211
Q ss_pred CCCCChHHHHHHHHHHHHHhhccCCC
Q 013811 208 TSDPSGRTIQAWITEMASYVKSIDRN 233 (436)
Q Consensus 208 ~~~~~~~~~~~w~~~~~~~Ir~~Dp~ 233 (436)
. ....+++++.+.+|++.|+
T Consensus 252 ~------~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 252 T------SAKHILEELAREVHELAAE 271 (542)
T ss_pred c------cHHHHHHHHHHHHHHHCCC
Confidence 1 1246789999999999887
No 49
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=96.45 E-value=0.0016 Score=60.68 Aligned_cols=120 Identities=16% Similarity=0.200 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHcCCEEEEeccc-CCCCC-CC----hhhhh--hHHh---------hcCCCC-CCC-CCCCCChHH---
Q 013811 110 FKGLDFVIAEARKYGIKLILSLAN-NYDSF-GG----KKQYV--NWAR---------SQGQFL-TSD-DDFFRNPVV--- 167 (436)
Q Consensus 110 l~~lD~~i~~a~~~Gi~vil~l~~-~w~~~-gg----~~~y~--~W~~---------~~G~~~-~~~-~~f~~~~~~--- 167 (436)
.+..+.+++...+.|.+.|++|.- .|-.- +- ...|+ +|.. ..|-.+ ... ..+-.+|..
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 456789999999999999999841 11000 00 00111 1110 001000 011 112223430
Q ss_pred HHHHHHHHHHHHhccccccccccCCC---CcEEEEEeecCCCCCCC------C---ChHHHHHHHHHHHHHhhccCCCCE
Q 013811 168 KGYYKNLIKTVLNRYNTFTGIHYKDD---PTIMAWELMNEPRCTSD------P---SGRTIQAWITEMASYVKSIDRNHL 235 (436)
Q Consensus 168 ~~~~~~~v~~iv~r~n~~tg~~yk~~---p~I~~weL~NEp~~~~~------~---~~~~~~~w~~~~~~~Ir~~Dp~~l 235 (436)
..+..++|..|+++ |++. -.|-.|.|-|||..-.. + +.+.+..-.-+++++||++||+..
T Consensus 103 ~~y~~ewV~~l~~~--------~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~ 174 (239)
T PF12891_consen 103 PVYMDEWVNYLVNK--------YGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAK 174 (239)
T ss_dssp EEEHHHHHHHHHHH--------H--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSE
T ss_pred HhHHHHHHHHHHHH--------HhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCe
Confidence 12223446666666 4443 35889999999985321 1 234555555678999999999987
Q ss_pred EE
Q 013811 236 LE 237 (436)
Q Consensus 236 V~ 237 (436)
|.
T Consensus 175 v~ 176 (239)
T PF12891_consen 175 VF 176 (239)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 50
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.41 E-value=0.09 Score=57.95 Aligned_cols=162 Identities=14% Similarity=0.231 Sum_probs=82.8
Q ss_pred HHHHHHHHHHCCCCEEEEccccC----C--CCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc-cCC--
Q 013811 70 VSTAFHEAASHGLTVARTWAFSD----G--GYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA-NNY-- 135 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d----~--~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~-~~w-- 135 (436)
+++.|+.++++|+|+|=+-...+ . +|. ++.+.-|. .+.|..+|++|+++||+|||++. |+.
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt-----~~dfk~lV~~~H~~Gi~VilD~V~NH~~~ 342 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGT-----PDDFRYFVDACHQAGIGVILDWVPAHFPK 342 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCC-----HHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 33446999999999999843321 1 121 12222232 46789999999999999999975 321
Q ss_pred CC-----CCChhhhhhHHhhcCCC--CCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecC----
Q 013811 136 DS-----FGGKKQYVNWARSQGQF--LTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNE---- 204 (436)
Q Consensus 136 ~~-----~gg~~~y~~W~~~~G~~--~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NE---- 204 (436)
+. +.|.+.|..-....|.. .....-=|.+|++++.+.+-++..+++. .+.|-.+---..++.++-...
T Consensus 343 ~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~-~iDG~R~D~v~~~~~~~~~~~~g~~ 421 (726)
T PRK05402 343 DAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEF-HIDGLRVDAVASMLYLDYSRKEGEW 421 (726)
T ss_pred CccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHh-CCcEEEECCHHHhhhcccccccccc
Confidence 10 11111110000000000 0000112457899999999999999761 122211100011111111100
Q ss_pred -CCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 205 -PRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 205 -p~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
|+............+++++.+.||+..|+.++.
T Consensus 422 ~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~li 455 (726)
T PRK05402 422 IPNIYGGRENLEAIDFLRELNAVVHEEFPGALTI 455 (726)
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 111100011235678899999999999986544
No 51
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.29 E-value=0.087 Score=56.92 Aligned_cols=163 Identities=12% Similarity=0.180 Sum_probs=86.4
Q ss_pred hHHHH-HHHHHHCCCCEEEEccccC----C--CCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC-C
Q 013811 69 KVSTA-FHEAASHGLTVARTWAFSD----G--GYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN-Y 135 (436)
Q Consensus 69 ~~~~~-l~~l~~~G~N~vRi~~~~d----~--~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~-w 135 (436)
.+.+. ++.++++|+|+|=+-...+ . +|. .+++.-|. .+.|.++|++|+++||+||+++.-+ .
T Consensus 157 ~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt-----~~dlk~lV~~~H~~Gi~VilD~V~NH~ 231 (613)
T TIGR01515 157 ELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGT-----PDDFMYFVDACHQAGIGVILDWVPGHF 231 (613)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCC-----HHHHHHHHHHHHHCCCEEEEEecccCc
Confidence 34444 5999999999999933211 1 121 11222221 4578999999999999999998532 1
Q ss_pred CC-------CCChhhhhhHHhhcCCC--CCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCC
Q 013811 136 DS-------FGGKKQYVNWARSQGQF--LTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPR 206 (436)
Q Consensus 136 ~~-------~gg~~~y~~W~~~~G~~--~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~ 206 (436)
.. +.|.+.|..-....+.. ....+--+.+|.+++.+.+-++.++++. .+.|..+-.-+.++.++-.+++.
T Consensus 232 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey-~iDG~R~D~v~~~~~~~~~~~~~ 310 (613)
T TIGR01515 232 PKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFY-HIDGLRVDAVASMLYLDYSRDEG 310 (613)
T ss_pred CCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHh-CCcEEEEcCHHHhhhhccccccc
Confidence 10 11111110000000000 0000112357899999999999999861 12332221112343333333332
Q ss_pred C-----CCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 207 C-----TSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 207 ~-----~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
. ...........+++++.+.||+..|+.++.
T Consensus 311 ~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~li 346 (613)
T TIGR01515 311 EWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTI 346 (613)
T ss_pred cccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 1 000011235678899999999999986554
No 52
>PRK10785 maltodextrin glucosidase; Provisional
Probab=96.26 E-value=0.055 Score=58.28 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=43.6
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEcc-ccCCC---C-----CCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWA-FSDGG---Y-----RPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~-~~d~~---~-----~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
|-.-+.+-|+.++++|+|+|=+-. |.... | -.+.|.-| ..+.|+.++++|+++||+||+++.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLG-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 345678889999999999998833 31111 1 11222222 246788999999999999999985
No 53
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.23 E-value=0.17 Score=54.98 Aligned_cols=161 Identities=13% Similarity=0.218 Sum_probs=82.5
Q ss_pred HHHHHHHHHHCCCCEEEEccccC----C--CCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc-cCCCC
Q 013811 70 VSTAFHEAASHGLTVARTWAFSD----G--GYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA-NNYDS 137 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d----~--~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~-~~w~~ 137 (436)
+++.|+.++++|+|+|=+....+ . +|. .+.+.-|. .+.|.++|++|+++||+||+++. |+...
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt-----~~d~k~lv~~~H~~Gi~VilD~V~nH~~~ 247 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGT-----PEDFMYLVDALHQNGIGVILDWVPGHFPK 247 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCC-----HHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 44446999999999999843211 1 121 12222232 46789999999999999999975 32110
Q ss_pred -------CCChhhhhhHHhh-cCCC--CCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEee--cC-
Q 013811 138 -------FGGKKQYVNWARS-QGQF--LTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELM--NE- 204 (436)
Q Consensus 138 -------~gg~~~y~~W~~~-~G~~--~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~--NE- 204 (436)
+.|.+.|. +... .+.. ....+--|.+|++++.+.+-++..++.. .+.|-.+-.-+.++..+-. .|
T Consensus 248 ~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~-~iDG~R~D~~~~~~~~d~~~~~~~ 325 (633)
T PRK12313 248 DDDGLAYFDGTPLYE-YQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEY-HLDGLRVDAVSNMLYLDYDEEGEW 325 (633)
T ss_pred CcccccccCCCccee-ecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh-CCcEEEEcChhhhhhcccccccCc
Confidence 11111110 0000 0000 0000112457999999999999998761 1222111111111111100 00
Q ss_pred -CCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 205 -PRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 205 -p~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
|+............+++++.+.||+..|+.++.
T Consensus 326 ~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~li 359 (633)
T PRK12313 326 TPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMI 359 (633)
T ss_pred CCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEE
Confidence 110000001134678899999999999986443
No 54
>PLN02705 beta-amylase
Probab=96.15 E-value=0.074 Score=55.61 Aligned_cols=130 Identities=15% Similarity=0.290 Sum_probs=85.7
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc-CCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChh--
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR-SPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKK-- 142 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~-~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~-- 142 (436)
+...++..|..||++|+.-|=+-+. |-.++. .|+.|| |..+..+++.+++.||++.+.|.-+ -+||.-
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVW----WGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFH--qCGGNVGD 336 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCW----WGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFH--EYGGNASG 336 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEee--ccCCCCCC
Confidence 3577999999999999998887222 333444 688899 8999999999999999986655321 234421
Q ss_pred ----hhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHH
Q 013811 143 ----QYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQA 218 (436)
Q Consensus 143 ----~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~ 218 (436)
..|.|..+.|. .+++-||+|..- .++.. -++|-.-++|-....+.-+.+.+
T Consensus 337 ~~~IPLP~WV~e~g~--~nPDifftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~D 391 (681)
T PLN02705 337 NVMISLPQWVLEIGK--DNQDIFFTDREG----------------------RRNTE-CLSWSIDKERVLKGRTGIEVYFD 391 (681)
T ss_pred cccccCCHHHHHhcc--cCCCceeecCCC----------------------Ccccc-eeeeecCcccccCCCCHHHHHHH
Confidence 25678776553 234677876431 23333 35699999997654433355666
Q ss_pred HHHHHHHHhhc
Q 013811 219 WITEMASYVKS 229 (436)
Q Consensus 219 w~~~~~~~Ir~ 229 (436)
|++........
T Consensus 392 FM~SFr~~F~~ 402 (681)
T PLN02705 392 FMRSFRSEFDD 402 (681)
T ss_pred HHHHHHHHHHH
Confidence 66555544444
No 55
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.075 Score=53.72 Aligned_cols=178 Identities=16% Similarity=0.236 Sum_probs=100.7
Q ss_pred HHHHHHHHHCCCCEEEEcc--ccCC-CCC----CCccCCCC------CChhhhhhHHHHHHHHHHcCCEEEEecccCCCC
Q 013811 71 STAFHEAASHGLTVARTWA--FSDG-GYR----PLQRSPGS------YNEQMFKGLDFVIAEARKYGIKLILSLANNYDS 137 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~--~~d~-~~~----~lq~~pg~------~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~ 137 (436)
...++.+|++-+-+||.+. |.++ .|. +.+.+|-. ..|..-=...+++++|++.|..+++.+.-.
T Consensus 52 kDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~G--- 128 (501)
T COG3534 52 KDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLG--- 128 (501)
T ss_pred HHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecC---
Confidence 3557889999999999965 2221 121 11222322 223333356789999999999988887422
Q ss_pred CCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC---CChH
Q 013811 138 FGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSD---PSGR 214 (436)
Q Consensus 138 ~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~---~~~~ 214 (436)
++|.+.-..|..-... ....+|.+ += | -.| ++.-=+|-.|.|+||-..... ...+
T Consensus 129 srgvd~ar~~vEY~n~---pggtywsd-------------lR-~---~~G--~~~P~nvK~w~lGNEm~GpWq~G~~~a~ 186 (501)
T COG3534 129 SRGVDEARNWVEYCNH---PGGTYWSD-------------LR-R---ENG--REEPWNVKYWGLGNEMDGPWQCGHKTAP 186 (501)
T ss_pred CccHHHHHHHHHHccC---CCCChhHH-------------HH-H---hcC--CCCCcccceEEeccccCCCcccccccCH
Confidence 2555555555432110 11222221 11 1 112 233336889999999955432 2445
Q ss_pred HHHHHHHHHHHHhhccCCCC-EEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecCCC
Q 013811 215 TIQAWITEMASYVKSIDRNH-LLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPD 283 (436)
Q Consensus 215 ~~~~w~~~~~~~Ir~~Dp~~-lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~ 283 (436)
.+-.++.+..++.|=.||.. .|..|+.+--+.. .|.|. +-+-..+...+|++|.|+|-+
T Consensus 187 EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~~n~~-------~~~W~---~~vl~~~~e~vD~ISlH~Y~G 246 (501)
T COG3534 187 EYGRLANEYRKYMKYFDPTIENVVCGSANGANPT-------DPNWE---AVVLEEAYERVDYISLHYYKG 246 (501)
T ss_pred HHHHHHHHHHHHHhhcCccccceEEeecCCCCCC-------chHHH---HHHHHHHhhhcCeEEEEEecC
Confidence 66678889999999889864 4555543211111 12221 112234567799999999943
No 56
>PLN02801 beta-amylase
Probab=96.07 E-value=0.089 Score=54.06 Aligned_cols=129 Identities=12% Similarity=0.278 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc-CCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChh---
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR-SPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKK--- 142 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~-~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~--- 142 (436)
...++..|+.||++|+.-|=+-+. |-.++. .|++|| |..++++++.+++.||++.+.+.-+ -+||.-
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVW----WGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNVGD~ 106 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVW----WGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFH--QCGGNVGDA 106 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeee----eeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCCc
Confidence 467999999999999998887222 333443 688999 8999999999999999986555322 234421
Q ss_pred ---hhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHH
Q 013811 143 ---QYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAW 219 (436)
Q Consensus 143 ---~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w 219 (436)
..|.|..+.|. .+++-||+|..- .++.. -++|.+-|+|-....+.-+.+.++
T Consensus 107 ~~IpLP~WV~~~g~--~~pDi~ftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~Df 161 (517)
T PLN02801 107 VNIPIPQWVRDVGD--SDPDIFYTNRSG----------------------NRNKE-YLSIGVDNLPLFHGRTAVEMYSDY 161 (517)
T ss_pred ccccCCHHHHHhhc--cCCCceeecCCC----------------------CcCcc-eeeeccCcccccCCCCHHHHHHHH
Confidence 24678766553 244677876431 22322 457889999987654323555666
Q ss_pred HHHHHHHhhc
Q 013811 220 ITEMASYVKS 229 (436)
Q Consensus 220 ~~~~~~~Ir~ 229 (436)
++........
T Consensus 162 m~SFr~~F~~ 171 (517)
T PLN02801 162 MKSFRENMAD 171 (517)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 57
>PLN02905 beta-amylase
Probab=95.99 E-value=0.087 Score=55.28 Aligned_cols=130 Identities=13% Similarity=0.271 Sum_probs=85.4
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc-CCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCCh---
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR-SPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGK--- 141 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~-~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~--- 141 (436)
+...++..|..||++|+.-|=+-+. |-.++. .|+.|| |..+..+++.+++.||++.+.|.-+ -+||.
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVW----WGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFH--qCGGNVGD 354 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCW----WGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFH--ECGGNVGD 354 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 3467899999999999998887222 333444 688899 8999999999999999986665322 23442
Q ss_pred ---hhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHH
Q 013811 142 ---KQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQA 218 (436)
Q Consensus 142 ---~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~ 218 (436)
-..|.|....|. .+++-||+|..- .++... ++|-.-|+|-....+.-+.+..
T Consensus 355 ~~~IPLP~WV~e~g~--~nPDifftDrsG----------------------~rn~Ey-LSlg~D~~pvl~GRTplq~Y~D 409 (702)
T PLN02905 355 DVCIPLPHWVAEIGR--SNPDIFFTDREG----------------------RRNPEC-LSWGIDKERILRGRTALEVYFD 409 (702)
T ss_pred cccccCCHHHHHhhh--cCCCceEecCCC----------------------CccCce-eeeecccccccCCCCHHHHHHH
Confidence 125678765543 234667876431 233333 4699999997765433345565
Q ss_pred HHHHHHHHhhc
Q 013811 219 WITEMASYVKS 229 (436)
Q Consensus 219 w~~~~~~~Ir~ 229 (436)
|++........
T Consensus 410 FM~SFr~~F~~ 420 (702)
T PLN02905 410 YMRSFRVEFDE 420 (702)
T ss_pred HHHHHHHHHHH
Confidence 65554444444
No 58
>PRK14705 glycogen branching enzyme; Provisional
Probab=95.98 E-value=0.19 Score=57.84 Aligned_cols=164 Identities=13% Similarity=0.201 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccC----C--CCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc-cCC
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSD----G--GYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA-NNY 135 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d----~--~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~-~~w 135 (436)
+..++.++++|++|+|+|=+....+ . +|. ++.++-| ..+.|.++|++|+++||.||+++. |+.
T Consensus 766 ~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryG-----t~~dfk~lVd~~H~~GI~VILD~V~nH~ 840 (1224)
T PRK14705 766 ELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFG-----HPDEFRFLVDSLHQAGIGVLLDWVPAHF 840 (1224)
T ss_pred HHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccC-----CHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 3445568999999999999844322 1 121 1122222 256789999999999999999975 321
Q ss_pred CC-------CCChhhhhhHHhhcCCCC--CCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeec---
Q 013811 136 DS-------FGGKKQYVNWARSQGQFL--TSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMN--- 203 (436)
Q Consensus 136 ~~-------~gg~~~y~~W~~~~G~~~--~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~N--- 203 (436)
.. +.|...|-.-....|... ....--|.++++++.+.+-+...+++. .+.|..+---.+++..+-.-
T Consensus 841 ~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ey-hiDGfR~Dav~~mly~Dysr~~g 919 (1224)
T PRK14705 841 PKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEF-HIDGLRVDAVASMLYLDYSREEG 919 (1224)
T ss_pred CcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHh-CCCcEEEeehhhhhhcccccccc
Confidence 10 111111100000000000 000101467899999999999999871 12232121112222222211
Q ss_pred --CCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 204 --EPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 204 --Ep~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
.|+............+++++.+.|++..|+.++.
T Consensus 920 ~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~I 955 (1224)
T PRK14705 920 QWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMI 955 (1224)
T ss_pred cccccccCCccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 1222211112345778999999999999876544
No 59
>PLN02161 beta-amylase
Probab=95.94 E-value=0.1 Score=53.57 Aligned_cols=129 Identities=14% Similarity=0.288 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc-CCCCCChhhhhhHHHHHHHHHHcCCEEEEec--ccCCCCCC---C
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR-SPGSYNEQMFKGLDFVIAEARKYGIKLILSL--ANNYDSFG---G 140 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~-~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l--~~~w~~~g---g 140 (436)
...++..|+.||++|+.-|=+-+. |-.+|. .|+.|| |..+.++++.+++.||++.+.+ |..-...| +
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVW----WGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVW----WGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEee----eeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 467899999999999998887222 333444 788899 8999999999999999986655 43111111 1
Q ss_pred hhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHH
Q 013811 141 KKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWI 220 (436)
Q Consensus 141 ~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~ 220 (436)
+ ..|.|..+.|. .+++-||+|..- .++.. -++|.+-|+|-....+.-+.+.+++
T Consensus 189 I-pLP~WV~~~g~--~~pDi~ftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~Dfm 242 (531)
T PLN02161 189 I-SLPLWIREIGD--VNKDIYYRDKNG----------------------FSNND-YLTLGVDQLPLFGGRTAVQCYEDFM 242 (531)
T ss_pred c-cCCHHHHhhhc--cCCCceEEcCCC----------------------Ccccc-eeeeecccchhcCCCCHHHHHHHHH
Confidence 2 35778776553 234678887531 23333 4578899999876543224555555
Q ss_pred HHHHHHhh
Q 013811 221 TEMASYVK 228 (436)
Q Consensus 221 ~~~~~~Ir 228 (436)
+......+
T Consensus 243 ~SFr~~F~ 250 (531)
T PLN02161 243 LSFSTKFE 250 (531)
T ss_pred HHHHHHHH
Confidence 44443333
No 60
>PLN02803 beta-amylase
Probab=95.89 E-value=0.092 Score=54.25 Aligned_cols=130 Identities=13% Similarity=0.236 Sum_probs=84.3
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc-CCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCCh---
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR-SPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGK--- 141 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~-~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~--- 141 (436)
++..++..|+.||++|+.-|=+-+. |-.++. .|+.|| |..+.++++.+++.||++.+.+.-+ -+||.
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVW----WGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNVGD 175 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAW----WGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFH--QCGGNVGD 175 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEee----eeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 3467899999999999998887222 333444 688999 9999999999999999986665322 23443
Q ss_pred ---hhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHH
Q 013811 142 ---KQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQA 218 (436)
Q Consensus 142 ---~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~ 218 (436)
-..|.|..+.|. .+++-||+|..- .+|.. -+.+.+-|+|-....+.-+.+.+
T Consensus 176 ~~~IpLP~WV~e~~~--~~pDi~ftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTplq~Y~D 230 (548)
T PLN02803 176 SCSIPLPPWVLEEMS--KNPDLVYTDRSG----------------------RRNPE-YISLGCDSLPVLRGRTPIQVYSD 230 (548)
T ss_pred cccccCCHHHHHhhh--cCCCceEecCCC----------------------Ccccc-eeccccccchhccCCCHHHHHHH
Confidence 125678765543 234667876431 22333 35688889988765432245566
Q ss_pred HHHHHHHHhhc
Q 013811 219 WITEMASYVKS 229 (436)
Q Consensus 219 w~~~~~~~Ir~ 229 (436)
|++......+.
T Consensus 231 fm~SFr~~F~~ 241 (548)
T PLN02803 231 YMRSFRERFKD 241 (548)
T ss_pred HHHHHHHHHHH
Confidence 65544444443
No 61
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.77 E-value=0.25 Score=53.44 Aligned_cols=160 Identities=11% Similarity=0.161 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHCCCCEEEEccccC----CC--CCC---CccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc-cCCCC-
Q 013811 69 KVSTAFHEAASHGLTVARTWAFSD----GG--YRP---LQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA-NNYDS- 137 (436)
Q Consensus 69 ~~~~~l~~l~~~G~N~vRi~~~~d----~~--~~~---lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~-~~w~~- 137 (436)
.+++.++.+|++|+|+|=+....+ .. |.. +.+.+ .|. ..+.|..+|++|+++||+||+++. |+...
T Consensus 169 ~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~-~~g--~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~ 245 (639)
T PRK14706 169 LAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS-RLG--TPEDFKYLVNHLHGLGIGVILDWVPGHFPTD 245 (639)
T ss_pred HHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccCcc
Confidence 445556899999999999844322 11 110 11111 121 256789999999999999999975 32110
Q ss_pred ------CCChhhh--hhHHhhcCCCC--CCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE------e
Q 013811 138 ------FGGKKQY--VNWARSQGQFL--TSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWE------L 201 (436)
Q Consensus 138 ------~gg~~~y--~~W~~~~G~~~--~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~we------L 201 (436)
+.|.+.| ..+ ..|... .+..-=+.++++++.+.+-++..++.. .+-|.++-.-.+++.++ +
T Consensus 246 ~~~l~~~dg~~~y~~~~~--~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~-~iDG~R~Dav~~~ly~d~~~~~~~ 322 (639)
T PRK14706 246 ESGLAHFDGGPLYEYADP--RKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDF-HVDGLRVDAVASMLYLDFSRTEWV 322 (639)
T ss_pred hhhhhccCCCcceeccCC--cCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh-CCCeEEEeeehheeecccCccccc
Confidence 0111111 000 001000 000111357899999999999999762 23332222223333222 2
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 202 MNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 202 ~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
.|+.... .......+++++.+.||+..|+.+++
T Consensus 323 ~~~~gg~---~n~~a~~fl~~ln~~v~~~~p~~~~i 355 (639)
T PRK14706 323 PNIHGGR---ENLEAIAFLKRLNEVTHHMAPGCMMI 355 (639)
T ss_pred ccccCCc---ccHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 2222221 12346678899999999998976544
No 62
>PLN00197 beta-amylase; Provisional
Probab=95.73 E-value=0.12 Score=53.48 Aligned_cols=127 Identities=14% Similarity=0.261 Sum_probs=82.4
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc-CCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCCh---
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR-SPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGK--- 141 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~-~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~--- 141 (436)
++..++..|+.||++|+.-|=+-+. |-.++. .|+.|| |..+.++++.+++.||++.+.+.-+ -+||.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvW----WGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFH--qCGGNVGD 195 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVW----WGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFH--QCGGNVGD 195 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 3467999999999999998887222 333444 788999 9999999999999999986665322 23442
Q ss_pred ---hhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHH
Q 013811 142 ---KQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQA 218 (436)
Q Consensus 142 ---~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~ 218 (436)
-..|.|....|. .+++-||+|..- .+|.. -++|-.-|+|-....+.-+.+.+
T Consensus 196 ~~~IpLP~WV~~~g~--~dpDifftDr~G----------------------~rn~E-yLSlg~D~~pvl~GRTpiq~Y~D 250 (573)
T PLN00197 196 SCTIPLPKWVVEEVD--KDPDLAYTDQWG----------------------RRNYE-YVSLGCDTLPVLKGRTPVQCYAD 250 (573)
T ss_pred cccccCCHHHHHhhc--cCCCceeecCCC----------------------Ccccc-eeccccccccccCCCCHHHHHHH
Confidence 125678766543 244678887531 22322 35688888887755433344555
Q ss_pred HHHHHHHH
Q 013811 219 WITEMASY 226 (436)
Q Consensus 219 w~~~~~~~ 226 (436)
|++.....
T Consensus 251 FM~SFr~~ 258 (573)
T PLN00197 251 FMRAFRDN 258 (573)
T ss_pred HHHHHHHH
Confidence 55444333
No 63
>smart00642 Aamy Alpha-amylase domain.
Probab=95.70 E-value=0.034 Score=49.55 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccC-C----CCCCCccCC-CCCCh--hhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSD-G----GYRPLQRSP-GSYNE--QMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d-~----~~~~lq~~p-g~~~~--~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
+-..+.+.|+.++++|+|+|-+....+ . .+...++.. -..++ ...+.|+.++++|+++||+||+++.-
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 456788889999999999999844211 1 010011000 00111 12577899999999999999999863
No 64
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=0.32 Score=49.40 Aligned_cols=196 Identities=17% Similarity=0.219 Sum_probs=110.1
Q ss_pred chhhhHHHHHHHHHHCCCCEEEEccccCCC--CC-CCc----cCCCCC-ChhhhhhHHHHHHHHHHcCCEEEEecccCCC
Q 013811 65 SQRSKVSTAFHEAASHGLTVARTWAFSDGG--YR-PLQ----RSPGSY-NEQMFKGLDFVIAEARKYGIKLILSLANNYD 136 (436)
Q Consensus 65 ~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~--~~-~lq----~~pg~~-~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~ 136 (436)
.++..+.+.|+.++++|+|+|=.=+..+|. |+ .+. ..||.. -+..++.|-.+|++|+++||.|+.=+
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf----- 135 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWF----- 135 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeech-----
Confidence 467889999999999999998763333331 21 111 123322 24457778899999999999997633
Q ss_pred CCCChh--------hhhhHHhhcCCC--C-CCC---CCCCCC---hHHHHHHHHHHHHHHhccccccccccCCCCc----
Q 013811 137 SFGGKK--------QYVNWARSQGQF--L-TSD---DDFFRN---PVVKGYYKNLIKTVLNRYNTFTGIHYKDDPT---- 195 (436)
Q Consensus 137 ~~gg~~--------~y~~W~~~~G~~--~-~~~---~~f~~~---~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~---- 195 (436)
.++.+. .++.|....... + ... ..+|-| |++++.+.+.+.++|++ |.=|+-
T Consensus 136 ~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~--------YdvDGIQfDd 207 (418)
T COG1649 136 NPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRN--------YDVDGIQFDD 207 (418)
T ss_pred hhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhC--------CCCCceecce
Confidence 222211 112222111000 0 011 355554 68999999999999988 654431
Q ss_pred EEEEEeecCCCCCCC-------------C-Ch--------HHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCcccc
Q 013811 196 IMAWELMNEPRCTSD-------------P-SG--------RTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKR 253 (436)
Q Consensus 196 I~~weL~NEp~~~~~-------------~-~~--------~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~ 253 (436)
++.| -.+-....+ + +. +...+++.++..+||+..|+..+++.-. +........
T Consensus 208 ~fy~--~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp~---n~~~~~~f~ 282 (418)
T COG1649 208 YFYY--PIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSPF---NPLGSATFA 282 (418)
T ss_pred eecc--cCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEccC---CCCCcccee
Confidence 2221 111111000 0 11 2455567888999999999999887541 100100011
Q ss_pred CCCCCcccchhhhhcCCCCcceEEeecC
Q 013811 254 VNPNLDIGTDFVANNLIPGIDFATVHSY 281 (436)
Q Consensus 254 ~np~~~~g~df~~~~~~~~iD~~s~H~Y 281 (436)
|+- ...|+..-.....+|.+-...|
T Consensus 283 y~~---~~qDw~~Wv~~G~iD~l~pqvY 307 (418)
T COG1649 283 YDY---FLQDWRRWVRQGLIDELAPQVY 307 (418)
T ss_pred hhh---hhhhHHHHHHcccHhhhhhhhh
Confidence 111 1234443344688998888888
No 65
>PLN02960 alpha-amylase
Probab=95.54 E-value=0.62 Score=51.53 Aligned_cols=161 Identities=11% Similarity=0.172 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccC----C--CCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc-cCC
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSD----G--GYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA-NNY 135 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d----~--~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~-~~w 135 (436)
+.+++.|+.++++|+|+|=+....+ . +|. ++.+.-|. .+.|..+|++|+++||.|||++. |+.
T Consensus 417 ~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGt-----p~dfk~LVd~aH~~GI~VILDvV~NH~ 491 (897)
T PLN02960 417 EFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGT-----PDDFKRLVDEAHGLGLLVFLDIVHSYA 491 (897)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCC-----HHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 3345679999999999999944321 0 121 11222222 46789999999999999999985 321
Q ss_pred CC--------CCChh-hhhhHHhhcCCCC--CCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe--e
Q 013811 136 DS--------FGGKK-QYVNWARSQGQFL--TSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWEL--M 202 (436)
Q Consensus 136 ~~--------~gg~~-~y~~W~~~~G~~~--~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL--~ 202 (436)
.. +.|.+ .|-. ....|... ....-=|.++++++.+.+-++..++. =.+.|..+-.-.+++..+- .
T Consensus 492 ~~d~~~~L~~FDG~~~~Yf~-~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~E-yhIDGfR~DAV~sMlY~d~g~~ 569 (897)
T PLN02960 492 AADEMVGLSLFDGSNDCYFH-SGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTE-YRVDGFQFHSLGSMLYTHNGFA 569 (897)
T ss_pred CCccccchhhcCCCccceee-cCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHH-HCCCceeecccceeeeeccCcc
Confidence 11 11110 0100 00001000 00111245789999999999999876 2244544433344443331 1
Q ss_pred cCCC-------CCCCCChHHHHHHHHHHHHHhhccCCCCEEEe
Q 013811 203 NEPR-------CTSDPSGRTIQAWITEMASYVKSIDRNHLLEA 238 (436)
Q Consensus 203 NEp~-------~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~v 238 (436)
+++. ... ......+++++...|++..|+.+++.
T Consensus 570 ~~~G~~~~~~n~~~---d~~Ai~fL~~lN~~v~~~~P~vilIA 609 (897)
T PLN02960 570 SFTGDLDEYCNQYV---DRDALIYLILANEMLHQLHPNIITIA 609 (897)
T ss_pred ccCCcccccCCccC---CchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 1111 111 23467788999999999888775543
No 66
>PRK12568 glycogen branching enzyme; Provisional
Probab=95.31 E-value=0.39 Score=52.48 Aligned_cols=163 Identities=14% Similarity=0.213 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccC----C--CCCC---CccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc-CCCC
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSD----G--GYRP---LQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN-NYDS 137 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d----~--~~~~---lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~-~w~~ 137 (436)
+..++.|+.++++|+|+|=+....+ . +|.. +.+.+ .|. ..+.|..+|++|+++||+||+++.- +...
T Consensus 270 ~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G--~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHG--SPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3455668999999999999844321 1 1211 11111 111 2467899999999999999999852 2111
Q ss_pred -------CCChhhhhhHHhhcCCCC--CCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE--------
Q 013811 138 -------FGGKKQYVNWARSQGQFL--TSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWE-------- 200 (436)
Q Consensus 138 -------~gg~~~y~~W~~~~G~~~--~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~we-------- 200 (436)
+.|...|.......|... ....-=|.+|++++.+.+-++..+++ -.+.|..+-.-..++..+
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~e-yhIDG~R~DAva~mly~d~~r~~g~w 425 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEH-YHLDGLRVDAVASMLYRDYGRAEGEW 425 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHH-hCceEEEEcCHhHhhhhccccccccc
Confidence 111111210000001000 00011246789999999888888876 123332222112232222
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 201 LMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 201 L~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
+-|+-... ..-....+++++.+.||+..|+.++.
T Consensus 426 ~pn~~gg~---en~ea~~Fl~~ln~~v~~~~P~~~~I 459 (730)
T PRK12568 426 VPNAHGGR---ENLEAVAFLRQLNREIASQFPGVLTI 459 (730)
T ss_pred cccccCCc---cChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 11321111 11235678999999999999986554
No 67
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=95.24 E-value=0.67 Score=46.42 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEcc-ccCCCCCCCccCCCCCCh----hhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChh
Q 013811 68 SKVSTAFHEAASHGLTVARTWA-FSDGGYRPLQRSPGSYNE----QMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKK 142 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~-~~d~~~~~lq~~pg~~~~----~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~ 142 (436)
-+.++-++.+|++|++.+=+-+ +-|| +.-....-..|+- -.-+-+.+++++|+++||++.+.++.. +++- +
T Consensus 91 fD~dqW~~~ak~aGakY~VlTakHHDG-F~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~-dw~~--~ 166 (346)
T PF01120_consen 91 FDADQWAKLAKDAGAKYVVLTAKHHDG-FCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW-DWHH--P 166 (346)
T ss_dssp --HHHHHHHHHHTT-SEEEEEEE-TT---BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS-SCCC--T
T ss_pred CCHHHHHHHHHHcCCCEEEeehhhcCc-cccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch-HhcC--c
Confidence 5678889999999999887733 2232 1111111111221 234667899999999999999987642 2210 0
Q ss_pred hhhhHHhhcCCCCCCCCCCCCC---hH-HHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHH
Q 013811 143 QYVNWARSQGQFLTSDDDFFRN---PV-VKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQA 218 (436)
Q Consensus 143 ~y~~W~~~~G~~~~~~~~f~~~---~~-~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~ 218 (436)
.|..- ..+. .....-.. ++ ..+.+...+++|++| | +|.++-++........ .+.
T Consensus 167 ~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~ql~EL~~~--------Y--~~d~lWfDg~~~~~~~------~~~- 224 (346)
T PF01120_consen 167 DYPPD--EEGD---ENGPADGPGNWQRYYNEYWLAQLRELLTR--------Y--KPDILWFDGGWPDPDE------DWD- 224 (346)
T ss_dssp TTTSS--CHCH---HCC--HCCHHHHHHHHHHHHHHHHHHHHC--------S--TESEEEEESTTSCCCT------HHH-
T ss_pred ccCCC--ccCC---cccccccchhhHhHhhhhhHHHHHHHHhC--------C--CcceEEecCCCCcccc------ccC-
Confidence 11000 0000 00000001 12 234778999999999 9 7889988887765221 111
Q ss_pred HHHHHHHHhhccCCCCEEE
Q 013811 219 WITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 219 w~~~~~~~Ir~~Dp~~lV~ 237 (436)
..++.+.||++.|+.+|.
T Consensus 225 -~~~~~~~i~~~qp~~ii~ 242 (346)
T PF01120_consen 225 -SAELYNWIRKLQPDVIIN 242 (346)
T ss_dssp -HHHHHHHHHHHSTTSEEE
T ss_pred -HHHHHHHHHHhCCeEEEe
Confidence 278899999999988875
No 68
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.91 E-value=0.47 Score=51.24 Aligned_cols=143 Identities=20% Similarity=0.305 Sum_probs=79.6
Q ss_pred HHHHHHHHCCCCEEEEccccCC--------------CCCCC---ccCCCCC--Ch----hhhhhHHHHHHHHHHcCCEEE
Q 013811 72 TAFHEAASHGLTVARTWAFSDG--------------GYRPL---QRSPGSY--NE----QMFKGLDFVIAEARKYGIKLI 128 (436)
Q Consensus 72 ~~l~~l~~~G~N~vRi~~~~d~--------------~~~~l---q~~pg~~--~~----~~l~~lD~~i~~a~~~Gi~vi 128 (436)
+.|+.|+++|+|+|=+....+. +|... .+.+ .| ++ ...+.|..+|++|+++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 5699999999999998432110 11110 1100 01 11 124679999999999999999
Q ss_pred EecccCCCCCCC--hhhhh----hHH---hhcCCCCC---CCCCC-CCChHHHHHHHHHHHHHHhccccccccccCCCCc
Q 013811 129 LSLANNYDSFGG--KKQYV----NWA---RSQGQFLT---SDDDF-FRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPT 195 (436)
Q Consensus 129 l~l~~~w~~~gg--~~~y~----~W~---~~~G~~~~---~~~~f-~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~ 195 (436)
+++.-+ +.++ ...|. .|. ...|.... -..++ +.+|.+++.+.+.++..+++ |+=|-
T Consensus 247 lDvV~N--H~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e--------~~iDG- 315 (605)
T TIGR02104 247 MDVVYN--HTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKE--------YNIDG- 315 (605)
T ss_pred EEEEcC--CccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHH--------cCCCE-
Confidence 998532 1111 00110 010 00010000 00111 24688999999999999987 54331
Q ss_pred EEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 196 IMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 196 I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
+-++++.... ..+++++.+.+|+.+|+..+.
T Consensus 316 -fR~D~~~~~~----------~~~~~~~~~~~~~~~p~~~li 346 (605)
T TIGR02104 316 -FRFDLMGIHD----------IETMNEIRKALNKIDPNILLY 346 (605)
T ss_pred -EEEechhcCC----------HHHHHHHHHHHHhhCCCeEEE
Confidence 2245553221 335678888889998875543
No 69
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=94.68 E-value=0.45 Score=50.92 Aligned_cols=173 Identities=12% Similarity=0.124 Sum_probs=95.1
Q ss_pred eecccccccccCCc----chhhhHHHHHHHHHHCCCCEEEEccccC----CCC--CC-----CccCCCCCChhhhhhHHH
Q 013811 51 GFNAYWLMYVASDP----SQRSKVSTAFHEAASHGLTVARTWAFSD----GGY--RP-----LQRSPGSYNEQMFKGLDF 115 (436)
Q Consensus 51 G~N~~~~~~~~~~~----~~~~~~~~~l~~l~~~G~N~vRi~~~~d----~~~--~~-----lq~~pg~~~~~~l~~lD~ 115 (436)
.+++|.++..+-.+ +..+..++.|.+++++|+|+|=+....+ +.| .. .+.+-|. -+.|.+
T Consensus 144 ~~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGt-----Pedfk~ 218 (628)
T COG0296 144 PIVIYELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGT-----PEDFKA 218 (628)
T ss_pred CceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCC-----HHHHHH
Confidence 45666665433223 3567889999999999999999955432 112 11 1112221 346789
Q ss_pred HHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhh----------cCCCC--CCCCCCCCChHHHHHHHHHHHHHHhccc
Q 013811 116 VIAEARKYGIKLILSLANNYDSFGGKKQYVNWARS----------QGQFL--TSDDDFFRNPVVKGYYKNLIKTVLNRYN 183 (436)
Q Consensus 116 ~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~----------~G~~~--~~~~~f~~~~~~~~~~~~~v~~iv~r~n 183 (436)
+||+|+++||-|||+..-+ +++--..|...... .|... .....++..++++..+..-+...++. =
T Consensus 219 fVD~aH~~GIgViLD~V~~--HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~-y 295 (628)
T COG0296 219 LVDAAHQAGIGVILDWVPN--HFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEE-Y 295 (628)
T ss_pred HHHHHHHcCCEEEEEecCC--cCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHH-h
Confidence 9999999999999997522 22211112111100 01000 01233444677788777666666665 2
Q ss_pred cccccccCCCCcEEEE--------EeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCC
Q 013811 184 TFTGIHYKDDPTIMAW--------ELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNH 234 (436)
Q Consensus 184 ~~tg~~yk~~p~I~~w--------eL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~ 234 (436)
.+.|..+-.-++++.. .+-||..... .-...++.+++.+.|+..-|+.
T Consensus 296 HiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~---n~~a~efl~~~n~~i~~~~pg~ 351 (628)
T COG0296 296 HIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRE---NLEAAEFLRNLNSLIHEEEPGA 351 (628)
T ss_pred CCcceeeehhhhhhccchhhhhhcccccccCCcc---cHHHHHHhhhhhhhhcccCCCc
Confidence 2334333222333322 2334443321 2246677788888888776655
No 70
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.62 E-value=0.79 Score=44.95 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=90.2
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCC----CCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCCh
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDG----GYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGK 141 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~----~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~ 141 (436)
..+.+++.++.|+.+|+|.+-++. .|. ..+.+-..+|.|.+ +.+.++++.|+++||.||+.+-. +|-+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl-~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~----pGH~ 86 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYY-EDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQT----LGHL 86 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEE-ecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCC----HHHH
Confidence 347899999999999999999854 221 12223333566774 45678889999999999998743 2322
Q ss_pred hhhhhHHhhcCC-CCC--CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC---CCCChHH
Q 013811 142 KQYVNWARSQGQ-FLT--SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCT---SDPSGRT 215 (436)
Q Consensus 142 ~~y~~W~~~~G~-~~~--~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~---~~~~~~~ 215 (436)
....+|-.-... ... ...--.++|+..+..++.++++++-. +..-...+.|.. ++++--+.+. .....+.
T Consensus 87 ~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f-~s~~~HIG~DE~---~~~g~~~~~~~~~~~~~~~l 162 (301)
T cd06565 87 EFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELH-PSKYIHIGMDEA---YDLGRGRSLRKHGNLGRGEL 162 (301)
T ss_pred HHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhC-CCCeEEECCCcc---cccCCCHHHHHhcCCCHHHH
Confidence 222211000000 000 01122457888888889999988761 100011122211 2222111110 0112456
Q ss_pred HHHHHHHHHHHhhccCCCCEEE
Q 013811 216 IQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 216 ~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
+..+++++++.||+..+ .++.
T Consensus 163 ~~~~~~~v~~~v~~~g~-~~~~ 183 (301)
T cd06565 163 YLEHLKKVLKIIKKRGP-KPMM 183 (301)
T ss_pred HHHHHHHHHHHHHHcCC-EEEE
Confidence 78899999999999987 4444
No 71
>PRK03705 glycogen debranching enzyme; Provisional
Probab=94.30 E-value=0.28 Score=53.27 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=59.7
Q ss_pred HHHHHHHCCCCEEEEccccCC---------------CCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 73 AFHEAASHGLTVARTWAFSDG---------------GYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 73 ~l~~l~~~G~N~vRi~~~~d~---------------~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.|+.|+++|+|+|=+-...+. +|. .+++.-|.-.+..++.|..+|++|+++||+||+++.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 499999999999998332110 121 111111211112456799999999999999999985
Q ss_pred -cCCCCCCChhhhhh----------HHhhcCCCC--C--CCCCCCCChHHHHHHHHHHHHHHhc
Q 013811 133 -NNYDSFGGKKQYVN----------WARSQGQFL--T--SDDDFFRNPVVKGYYKNLIKTVLNR 181 (436)
Q Consensus 133 -~~w~~~gg~~~y~~----------W~~~~G~~~--~--~~~~f~~~~~~~~~~~~~v~~iv~r 181 (436)
|+-........+.. |....|... . ..+-=+.+|.+++.+.+-++..++.
T Consensus 264 ~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e 327 (658)
T PRK03705 264 FNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVET 327 (658)
T ss_pred ccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 32111000000000 100011000 0 0011134788999999999999987
No 72
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=94.27 E-value=1.2 Score=48.96 Aligned_cols=163 Identities=13% Similarity=0.225 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHCCCCEEEEccccCC------CCCC---CccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc-CCCC-
Q 013811 69 KVSTAFHEAASHGLTVARTWAFSDG------GYRP---LQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN-NYDS- 137 (436)
Q Consensus 69 ~~~~~l~~l~~~G~N~vRi~~~~d~------~~~~---lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~-~w~~- 137 (436)
..++.|+.++++|+|+|=+....+. +|.. +.+.+ .|. ..+.|.++|++|+++||+||+++.- +...
T Consensus 252 ~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~-~~G--tp~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 252 FADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS-RSG--TPEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 3567799999999999998443221 1110 11111 111 1367889999999999999999853 2110
Q ss_pred -CCChhhh----hhHHhh--cCCCC--CCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE------ee
Q 013811 138 -FGGKKQY----VNWARS--QGQFL--TSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWE------LM 202 (436)
Q Consensus 138 -~gg~~~y----~~W~~~--~G~~~--~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~we------L~ 202 (436)
..|...+ ..|... .|... ....--|.++++++...+-++..+++- .+.|..+-.-.+++... ..
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey-~IDGfRfDaV~smlY~~hg~~~~f~ 407 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEY-KFDGFRFDGVTSMLYHHHGLQMAFT 407 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHh-CcccccccchhhhhccccCcccccc
Confidence 0011111 011100 01000 000111457889999999999999851 13333332223333221 11
Q ss_pred ---cCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 203 ---NEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 203 ---NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
||- ...........+++.+...|++..|+.+.+
T Consensus 408 ~~~~~~--~g~~~d~~a~~fL~~~N~~i~~~~p~~~~I 443 (758)
T PLN02447 408 GNYNEY--FGMATDVDAVVYLMLANDLLHGLYPEAVTI 443 (758)
T ss_pred cCcccc--cCCccChHHHHHHHHHHHHHHHhCCCeEEE
Confidence 221 111112345778899999999999986554
No 73
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=94.21 E-value=2.2 Score=45.52 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccc-cC----CCCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAF-SD----GGYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~-~d----~~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+-.-+.+.|+.++++|+|+|=+-.+ .. .+|. .+.|.-| ..+.|+.+|++|+++||+||+++.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~G-----t~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFG-----TMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4456778899999999999988332 11 1111 1111112 257789999999999999999985
No 74
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=94.06 E-value=0.05 Score=52.68 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCC--CCCCccCC-CCCCh--hhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGG--YRPLQRSP-GSYNE--QMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~--~~~lq~~p-g~~~~--~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.-+.+.|++++++|+|+|=+....+.. +...++.. -..++ ...+.|.++|++|+++||+||+++.
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 456777999999999999994432211 11111100 00111 1367889999999999999999985
No 75
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=94.01 E-value=1.2 Score=51.03 Aligned_cols=148 Identities=21% Similarity=0.305 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEcc-cc----C-------------------CCCCCC---ccCCCCCCh------hhhhhHH
Q 013811 68 SKVSTAFHEAASHGLTVARTWA-FS----D-------------------GGYRPL---QRSPGSYNE------QMFKGLD 114 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~-~~----d-------------------~~~~~l---q~~pg~~~~------~~l~~lD 114 (436)
..+.+.|++|+++|+|+|=+.. +. + -+|.+. .+. +.|.. .....|.
T Consensus 480 ~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape-~~Ygtdp~dp~~ri~EfK 558 (1111)
T TIGR02102 480 AAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALS-GMYSEDPKDPELRIAEFK 558 (1111)
T ss_pred HHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccc-cccccCCcCccccHHHHH
Confidence 3455679999999999999843 21 0 001100 010 11211 1256799
Q ss_pred HHHHHHHHcCCEEEEecc-cCCCC---CCCh-hhhhhHHhhcCCCCC--CCCC-CCCChHHHHHHHHHHHHHHhcccccc
Q 013811 115 FVIAEARKYGIKLILSLA-NNYDS---FGGK-KQYVNWARSQGQFLT--SDDD-FFRNPVVKGYYKNLIKTVLNRYNTFT 186 (436)
Q Consensus 115 ~~i~~a~~~Gi~vil~l~-~~w~~---~gg~-~~y~~W~~~~G~~~~--~~~~-f~~~~~~~~~~~~~v~~iv~r~n~~t 186 (436)
.||++|+++||+||+++. |+-.. +-+. +.|-.+....|.... ...+ -..++.+++.+.+.++..++.
T Consensus 559 ~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e----- 633 (1111)
T TIGR02102 559 NLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE----- 633 (1111)
T ss_pred HHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh-----
Confidence 999999999999999985 32110 0000 011000000111000 0011 124678889999999999987
Q ss_pred ccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEE
Q 013811 187 GIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLL 236 (436)
Q Consensus 187 g~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV 236 (436)
|+=|- +-++++... + ..+++++...+++++|+.++
T Consensus 634 ---y~VDG--FRfDl~g~~------d----~~~~~~~~~~l~~~dP~~~l 668 (1111)
T TIGR02102 634 ---FKVDG--FRFDMMGDH------D----AASIEIAYKEAKAINPNIIM 668 (1111)
T ss_pred ---cCCcE--EEEeccccC------C----HHHHHHHHHHHHHhCcCEEE
Confidence 65442 346776421 1 23456666778888997544
No 76
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=93.39 E-value=1.2 Score=44.71 Aligned_cols=233 Identities=18% Similarity=0.182 Sum_probs=118.5
Q ss_pred HHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCC
Q 013811 75 HEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQF 154 (436)
Q Consensus 75 ~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~ 154 (436)
..-++.|+|-||-++.-. + ..| .+ .|+ +.++|++++..-..|+-.|.. .-.|+.+.-..+ .|-.
T Consensus 12 t~~~Ei~v~yi~~~~v~h--~-~~q-~~-~~~---~t~~d~i~d~~~~~~~~~ie~-~l~~~~l~~~~~--~wq~----- 75 (428)
T COG3664 12 TTDDEIQVNYIRRHGVWH--V-NAQ-KL-FYP---FTYIDEIIDTLLDLGLDLIEL-FLIWNNLNTKEH--QWQL----- 75 (428)
T ss_pred chhhhhceeeehhcceee--e-eec-cc-cCC---hHHHHHHHHHHHHhccHHHHH-hhcccchhhhhh--hccc-----
Confidence 344689999998754311 1 111 11 144 567788888888888443332 222333211111 1211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCC
Q 013811 155 LTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDD-PTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRN 233 (436)
Q Consensus 155 ~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~-p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~ 233 (436)
.-......++.+..+++.++.| |+-. -+...++..|||+...+ ...+.+.+..++ |+.+|.
T Consensus 76 -----n~~~~~~~~dl~~~fl~h~~~~--------vg~e~v~kw~f~~~~~pn~~ad--~~eyfk~y~~~a---~~~~p~ 137 (428)
T COG3664 76 -----NVDDPKSVFDLIAAFLKHVIRR--------VGVEFVRKWPFYSPNEPNLLAD--KQEYFKLYDATA---RQRAPS 137 (428)
T ss_pred -----ccCCcHhHHHHHHHHHHHHHHH--------hChhheeecceeecCCCCcccc--hHHHHHHHHhhh---hccCcc
Confidence 1111224788889999999999 4422 34556889999998742 233333333333 366665
Q ss_pred CEEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecCCCCCCCCC--ChhH--------hHHHHHHHHH
Q 013811 234 HLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSS--NDRD--------QLSFLNNWLD 303 (436)
Q Consensus 234 ~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~--~~~~--------~~~~~~~~i~ 303 (436)
-. +|. . | ||.. -..|.+ ..+.+||++.|.|...-..-+ +.+. .++. .+.+.
T Consensus 138 i~--vg~-~-w----------~~e~--l~~~~k--~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~-~r~~~ 198 (428)
T COG3664 138 IQ--VGG-S-W----------NTER--LHEFLK--KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLED-LRGLK 198 (428)
T ss_pred ee--ecc-c-c----------CcHH--Hhhhhh--ccCcccceeecccccccccccCCCchhhhhhhhhhhhhH-HHHHH
Confidence 33 332 1 1 2210 011222 457899999999953211100 0110 0111 11223
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccC
Q 013811 304 THIQDAEHILRKPILLAEFGKSRKD--PGYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTE 368 (436)
Q Consensus 304 ~~~~~a~~~~~kPv~i~EfG~~~~~--~g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~ 368 (436)
+.++.. ..|+|+++.||-..... +-.++..|..++-..+. + .++.+.+.-+|.+.+-
T Consensus 199 d~i~~~--~~~~pl~~~~wntlt~~~~~~n~sy~raa~i~~~Lr---~---~g~~v~a~~yW~~sdl 257 (428)
T COG3664 199 DLIQHH--SLGLPLLLTNWNTLTGPREPTNGSYVRAAYIMRLLR---E---AGSPVDAFGYWTNSDL 257 (428)
T ss_pred HHHHhc--cCCCcceeecccccCCCccccCceeehHHHHHHHHH---h---cCChhhhhhhhhcccc
Confidence 333222 26899999999876543 11122233333222221 1 2456778889999873
No 77
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=93.12 E-value=3.8 Score=40.19 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=85.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCC-------CCCc---------cCCCCCChhhhhhHHHHHHHHHHcCCEEEEe
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGY-------RPLQ---------RSPGSYNEQMFKGLDFVIAEARKYGIKLILS 130 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~-------~~lq---------~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~ 130 (436)
.+.+++.++.|+..++|++-++.-.+-+| |.+. +..|.|.+ +.+.++++.|+++||.||+.
T Consensus 15 ~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 15 VESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEEe
Confidence 47899999999999999999865433223 2222 11234553 56688999999999999998
Q ss_pred cccCCCCCCChhhhhhHHhhc------CCCCC--CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe-
Q 013811 131 LANNYDSFGGKKQYVNWARSQ------GQFLT--SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWEL- 201 (436)
Q Consensus 131 l~~~w~~~gg~~~y~~W~~~~------G~~~~--~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL- 201 (436)
+-. .|.......+..+. +.... ...--.++|++.+..++.+++++.- +. .+. +-|
T Consensus 92 iD~----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~l--------f~-~~~---iHiG 155 (303)
T cd02742 92 IDM----PGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAEL--------FP-DRY---LHIG 155 (303)
T ss_pred ccc----hHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHh--------CC-CCe---EEec
Confidence 742 12221111111000 00000 0112235788888888888888876 52 222 222
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHhhccC
Q 013811 202 MNEPRCTSDPSGRTIQAWITEMASYVKSID 231 (436)
Q Consensus 202 ~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~D 231 (436)
+-|.....+ ..+.+..+++++.+.+++..
T Consensus 156 gDE~~~~~~-~~~l~~~f~~~~~~~v~~~g 184 (303)
T cd02742 156 GDEAHFKQD-RKHLMSQFIQRVLDIVKKKG 184 (303)
T ss_pred ceecCCCCC-HHHHHHHHHHHHHHHHHHcC
Confidence 223322111 23456778899999999876
No 78
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=93.01 E-value=2 Score=48.19 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHHcCCEEEEecc-cCCCCCCC------hhhhhh-HHhh---cCCCCCC---CCC-CCCChHHHHHHHHH
Q 013811 110 FKGLDFVIAEARKYGIKLILSLA-NNYDSFGG------KKQYVN-WARS---QGQFLTS---DDD-FFRNPVVKGYYKNL 174 (436)
Q Consensus 110 l~~lD~~i~~a~~~Gi~vil~l~-~~w~~~gg------~~~y~~-W~~~---~G~~~~~---~~~-f~~~~~~~~~~~~~ 174 (436)
...|+.||++|+++||+||+++. |+-.. +| .+.+.. |... .|. +.+ ..+ -..++.+++.+.+.
T Consensus 403 i~Efk~mV~alH~~Gi~VIlDVVyNHt~~-~g~~~~s~ld~~~P~YY~r~~~~G~-~~n~~~~~d~a~e~~~Vrk~iiDs 480 (898)
T TIGR02103 403 IKEFREMVQALNKTGLNVVMDVVYNHTNA-SGPNDRSVLDKIVPGYYHRLNEDGG-VENSTCCSNTATEHRMMAKLIVDS 480 (898)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccccc-cCccCcccccccCcHhhEeeCCCCC-eecCCCCcCCCCCCHHHHHHHHHH
Confidence 56788999999999999999985 33111 11 111111 1110 111 000 011 12368888999999
Q ss_pred HHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCCCcc
Q 013811 175 IKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGF 243 (436)
Q Consensus 175 v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~ 243 (436)
++.+++. |+=|- +-++++.... ..+++++.+++|+++|+.. .+| |+|
T Consensus 481 l~~W~~e--------y~VDG--FRfDlm~~~~----------~~f~~~~~~~l~~i~pdi~-l~G-EgW 527 (898)
T TIGR02103 481 LVVWAKD--------YKVDG--FRFDLMGHHP----------KAQMLAAREAIKALTPEIY-FYG-EGW 527 (898)
T ss_pred HHHHHHH--------cCCCE--EEEechhhCC----------HHHHHHHHHHHHHhCCCEE-EEe-cCC
Confidence 9999987 65542 3467774432 4567888889999999754 344 555
No 79
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=92.33 E-value=7.5 Score=38.52 Aligned_cols=145 Identities=16% Similarity=0.205 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCC-------CCc--------------------cCCCCCChhhhhhHHHHHHH
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYR-------PLQ--------------------RSPGSYNEQMFKGLDFVIAE 119 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~-------~lq--------------------~~pg~~~~~~l~~lD~~i~~ 119 (436)
.+.+++.++.|+..++|.+-++. +| .|+ .+. ...|.|. -+.+..+++.
T Consensus 16 ~~~ik~~id~ma~~K~N~lhlHl-tD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~y 90 (326)
T cd06564 16 MDFLKDIIKTMSWYKMNDLQLHL-ND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAY 90 (326)
T ss_pred HHHHHHHHHHHHHcCCceEEEee-cC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHH
Confidence 47899999999999999999854 44 231 110 0123354 3567899999
Q ss_pred HHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCC-----CCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCC-C
Q 013811 120 ARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQF-----LTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKD-D 193 (436)
Q Consensus 120 a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~-----~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~-~ 193 (436)
|+++||.||+.+-. .|.......+...-+.. .....--.++|++.+..++.+.+++.- |.. .
T Consensus 91 A~~rgI~vIPEID~----PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~--------f~~~~ 158 (326)
T cd06564 91 AKDRGVNIIPEIDS----PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDG--------FNPKS 158 (326)
T ss_pred HHHcCCeEeccCCC----cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHh--------cCCCC
Confidence 99999999988742 23222111111111110 001111246788888888888888886 442 2
Q ss_pred CcEEEEEe-ecCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 013811 194 PTIMAWEL-MNEPRCTSDPSGRTIQAWITEMASYVKSIDR 232 (436)
Q Consensus 194 p~I~~weL-~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp 232 (436)
+. +-| +-|.... ....+.+..+++++.+.|++.+.
T Consensus 159 ~~---~HiGgDE~~~~-~~~~~~~~~f~~~~~~~v~~~gk 194 (326)
T cd06564 159 DT---VHIGADEYAGD-AGYAEAFRAYVNDLAKYVKDKGK 194 (326)
T ss_pred CE---EEecccccccc-CccHHHHHHHHHHHHHHHHHcCC
Confidence 21 223 2222221 11346788899999999999853
No 80
>PLN02361 alpha-amylase
Probab=92.24 E-value=0.67 Score=47.30 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=53.4
Q ss_pred CCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCC----CCC-----CCccCCCCCChhhhhhH
Q 013811 43 NGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDG----GYR-----PLQRSPGSYNEQMFKGL 113 (436)
Q Consensus 43 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~----~~~-----~lq~~pg~~~~~~l~~l 113 (436)
+|..+.+-|+| |-... ..--..+.+.++.|+++|++.|=+....+. +|. .+.+.-| ..+.|
T Consensus 9 ~~~~v~lQ~F~--W~~~~---~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~G-----t~~el 78 (401)
T PLN02361 9 NGREILLQAFN--WESHK---HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYG-----SEHLL 78 (401)
T ss_pred CCCcEEEEEEe--ccCCc---cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccC-----CHHHH
Confidence 56788889998 33211 111246888999999999999988443221 111 1111112 24578
Q ss_pred HHHHHHHHHcCCEEEEecc
Q 013811 114 DFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 114 D~~i~~a~~~Gi~vil~l~ 132 (436)
+.+|++|+++||+||+++.
T Consensus 79 ~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 79 KSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHHHHHcCCEEEEEEc
Confidence 9999999999999999985
No 81
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=92.08 E-value=0.62 Score=45.03 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=70.7
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC-CCCCCChhhh
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN-YDSFGGKKQY 144 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~-w~~~gg~~~y 144 (436)
+.+++.+.-+.+++.|+|.+=+ .+. ...+-...++.++.+..+-+..+.+||+|.|++.-. ....||.++
T Consensus 55 ~~~R~~~YARllASiGINgvvl---NNV-----Na~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~lggL~T- 125 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVL---NNV-----NANPKLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIELGGLPT- 125 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE----S-S-----S--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHTTS-S--
T ss_pred chhHHHHHHHHHhhcCCceEEe---ccc-----ccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcccCCcCc-
Confidence 3478889999999999998887 222 122233567789999999999999999999997311 111233221
Q ss_pred hhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC--ChHHHHHHHHH
Q 013811 145 VNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDP--SGRTIQAWITE 222 (436)
Q Consensus 145 ~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~--~~~~~~~w~~~ 222 (436)
.+ --||++++.+++-+.+|-++ -|.+-++-+-=+-.....+ -+....+=.+-
T Consensus 126 -------------aD--Pld~~V~~WW~~k~~eIY~~-----------IPDfgGflVKAdSEGqPGP~~YgRthAdGANm 179 (328)
T PF07488_consen 126 -------------AD--PLDPEVRQWWKDKADEIYSA-----------IPDFGGFLVKADSEGQPGPFTYGRTHADGANM 179 (328)
T ss_dssp -----------------TTSHHHHHHHHHHHHHHHHH------------TT--EEEE--SBTTB--GGGGT--HHHHHHH
T ss_pred -------------CC--CCCHHHHHHHHHHHHHHHHh-----------CCCccceEEEecCCCCCCCcccCCCchhhHHH
Confidence 11 24788888888888777544 5666677664322222111 01122222355
Q ss_pred HHHHhhccC
Q 013811 223 MASYVKSID 231 (436)
Q Consensus 223 ~~~~Ir~~D 231 (436)
++++++-..
T Consensus 180 lA~Al~P~G 188 (328)
T PF07488_consen 180 LARALKPHG 188 (328)
T ss_dssp HHHHHGGGT
T ss_pred HHHHhhccC
Confidence 567776543
No 82
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=92.05 E-value=7.1 Score=37.08 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhcccccccccc
Q 013811 111 KGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHY 190 (436)
Q Consensus 111 ~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~y 190 (436)
..++.++..|+++|++|++.+.. |.. + .+ .....++..++.|.+-+-.++++ |
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg-~~~-~---~~--------------~~~~~~~~~r~~fi~~lv~~~~~--------~ 98 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAG-GSP-P---EF--------------TAALNDPAKRKALVDKIINYVVS--------Y 98 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcC-CCC-C---cc--------------hhhhcCHHHHHHHHHHHHHHHHH--------h
Confidence 35678899999999999999853 211 0 00 11345788888888888788877 6
Q ss_pred CCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCC
Q 013811 191 KDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGL 240 (436)
Q Consensus 191 k~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~ 240 (436)
.=+---+-||-... ..+.+..+++++.+.+++. +.++++..
T Consensus 99 ~~DGIdiDwE~~~~-------~~~~~~~fv~~Lr~~l~~~--~~~lt~av 139 (253)
T cd06545 99 NLDGIDVDLEGPDV-------TFGDYLVFIRALYAALKKE--GKLLTAAV 139 (253)
T ss_pred CCCceeEEeeccCc-------cHhHHHHHHHHHHHHHhhc--CcEEEEEc
Confidence 54444445553211 1356888999999888764 34666543
No 83
>PLN00196 alpha-amylase; Provisional
Probab=91.64 E-value=1.7 Score=44.84 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCC----CCCC---CccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDG----GYRP---LQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~----~~~~---lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
..+.+.|+.|+++|+++|=+....+. +|.. ....+..|. ..+.|+.+|++|+++||+||+++.
T Consensus 44 ~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fG--t~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 44 NFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYG--NEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCC--CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 55888999999999999888432211 1211 011111121 135688999999999999999974
No 84
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=91.41 E-value=0.64 Score=49.57 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=43.4
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccC-----CCCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSD-----GGYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d-----~~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+-.-+.+.|+.++++|+++|=+-.+.. .+|. .+.+.-| ..+.|+.+|++|+++||+||+++.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~G-----t~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYG-----TLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 445677889999999999998843211 1121 1111112 246789999999999999999985
No 85
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=91.34 E-value=0.56 Score=49.91 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=44.0
Q ss_pred chhhhHHHHHHHHHHCCCCEEEEccccC-----CCCCCCccCCCCCChh--hhhhHHHHHHHHHHcCCEEEEecc
Q 013811 65 SQRSKVSTAFHEAASHGLTVARTWAFSD-----GGYRPLQRSPGSYNEQ--MFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 65 ~~~~~~~~~l~~l~~~G~N~vRi~~~~d-----~~~~~lq~~pg~~~~~--~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
++-.-+.+.|+.++++|+|+|=+-.+-+ .+|.... .-..++. ..+.++.+|++|+++||+||+++.
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~d--y~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSD--YRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCccc--ccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4556788889999999999998833211 1111000 0011221 246788999999999999999985
No 86
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=91.25 E-value=7.2 Score=38.75 Aligned_cols=143 Identities=14% Similarity=0.171 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCC-------CCCcc----------CCCCCChhhhhhHHHHHHHHHHcCCEEEE
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGY-------RPLQR----------SPGSYNEQMFKGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~-------~~lq~----------~pg~~~~~~l~~lD~~i~~a~~~Gi~vil 129 (436)
.+.+++.++.|+..++|++-++.-.+-+| |.+.. ..|.|. -+.+..+++-|+++||.||+
T Consensus 17 ~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 17 VAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHHHcCCEEEE
Confidence 47899999999999999999865433223 22221 113355 35678999999999999999
Q ss_pred ecccCCCCCCChh----hhhhHHhhcCCCC--------CCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEE
Q 013811 130 SLANNYDSFGGKK----QYVNWARSQGQFL--------TSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIM 197 (436)
Q Consensus 130 ~l~~~w~~~gg~~----~y~~W~~~~G~~~--------~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~ 197 (436)
.+-.. |... .|+.-.. .+... ....--.++|+..+..++.+++++.- +.. +.
T Consensus 94 EiD~P----GH~~a~~~~~p~l~~-~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~--------f~~-~~-- 157 (329)
T cd06568 94 EIDMP----GHTNAALAAYPELNC-DGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL--------TPG-PY-- 157 (329)
T ss_pred ecCCc----HHHHHHHHhChhhcc-CCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHh--------CCC-Ce--
Confidence 87421 2221 2222111 11100 00111235788888888888888765 422 21
Q ss_pred EEEe-ecCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 013811 198 AWEL-MNEPRCTSDPSGRTIQAWITEMASYVKSIDR 232 (436)
Q Consensus 198 ~weL-~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp 232 (436)
+.| +-|.... ..+.+..+++++++.+++...
T Consensus 158 -iHiGgDE~~~~---~~~~~~~f~~~~~~~v~~~Gk 189 (329)
T cd06568 158 -IHIGGDEAHST---PHDDYAYFVNRVRAIVAKYGK 189 (329)
T ss_pred -EEEecccCCCC---chHHHHHHHHHHHHHHHHCCC
Confidence 233 2333322 235677889999999998763
No 87
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=91.15 E-value=5 Score=40.78 Aligned_cols=139 Identities=16% Similarity=0.143 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcc-ccCCCCCCCccCCCCCCh----hhhhhHHHHHHHHHHcCCEEEEecccCCCCCCCh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWA-FSDGGYRPLQRSPGSYNE----QMFKGLDFVIAEARKYGIKLILSLANNYDSFGGK 141 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~-~~d~~~~~lq~~pg~~~~----~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~ 141 (436)
.-+.++-.+.+|++|++.+=+-+ +-|| +.-.......|+- -.-+-+..+.++|+++||++-+.+.- ++++-
T Consensus 80 ~fD~~~Wa~~~k~AGakY~vlTaKHHDG-F~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-~DW~~-- 155 (384)
T smart00812 80 KFDPEEWADLFKKAGAKYVVLTAKHHDG-FCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-FDWFN-- 155 (384)
T ss_pred hCCHHHHHHHHHHcCCCeEEeeeeecCC-ccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH-HHhCC--
Confidence 35677889999999999887733 1122 1100001111111 02466789999999999999997542 32210
Q ss_pred hhhhhHHhhcCCCCCCCCCCCCChHHHHHH---HHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHH
Q 013811 142 KQYVNWARSQGQFLTSDDDFFRNPVVKGYY---KNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQA 218 (436)
Q Consensus 142 ~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~---~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~ 218 (436)
+.|.. ......+-.+.+...+++ ...+++|+++ |+. .++-++...+-.. ..+
T Consensus 156 p~y~~-------~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~--------Ygp--d~lWfD~~~~~~~------~~~-- 210 (384)
T smart00812 156 PLYAG-------PTSSDEDPDNWPRFQEFVDDWLPQLRELVTR--------YKP--DLLWFDGGWEAPD------DYW-- 210 (384)
T ss_pred Ccccc-------ccccccccccchhHHHHHHHHHHHHHHHHhc--------CCC--ceEEEeCCCCCcc------chh--
Confidence 11110 000001111223444555 8999999999 975 6776776543111 111
Q ss_pred HHHHHHHHhhccCCCC
Q 013811 219 WITEMASYVKSIDRNH 234 (436)
Q Consensus 219 w~~~~~~~Ir~~Dp~~ 234 (436)
-..++.+.||++.|+.
T Consensus 211 ~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 211 RSKEFLAWLYNLSPVK 226 (384)
T ss_pred cHHHHHHHHHHhCCCC
Confidence 1467899999999987
No 88
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=89.89 E-value=1 Score=47.12 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEcc-ccC--CC-CCCCccC----------CCCCChh--hhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWA-FSD--GG-YRPLQRS----------PGSYNEQ--MFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~-~~d--~~-~~~lq~~----------pg~~~~~--~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
..+.+-|+.++++|+|+|=+-. +.. +. +...++. +|..|+. ..+.|+.+|++|+++||+||+++
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4577889999999999988733 211 00 0111110 0111221 25678999999999999999998
Q ss_pred c
Q 013811 132 A 132 (436)
Q Consensus 132 ~ 132 (436)
.
T Consensus 102 V 102 (479)
T PRK09441 102 V 102 (479)
T ss_pred C
Confidence 5
No 89
>PRK09505 malS alpha-amylase; Reviewed
Probab=89.80 E-value=1.2 Score=48.71 Aligned_cols=66 Identities=12% Similarity=0.217 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHCCCCEEEEcc-ccC--C-------------CCCCCcc-CCCCCChh--hhhhHHHHHHHHHHcCCEE
Q 013811 67 RSKVSTAFHEAASHGLTVARTWA-FSD--G-------------GYRPLQR-SPGSYNEQ--MFKGLDFVIAEARKYGIKL 127 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~-~~d--~-------------~~~~lq~-~pg~~~~~--~l~~lD~~i~~a~~~Gi~v 127 (436)
-.-+.+-|++++++|+|+|=+-. +.. + .+....+ ..-..|+. ..+.|+.+|++|+++||+|
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34477889999999999998732 211 0 0000000 00011221 3567899999999999999
Q ss_pred EEecc
Q 013811 128 ILSLA 132 (436)
Q Consensus 128 il~l~ 132 (436)
|+++.
T Consensus 309 ilD~V 313 (683)
T PRK09505 309 LFDVV 313 (683)
T ss_pred EEEEC
Confidence 99975
No 90
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=89.71 E-value=10 Score=37.70 Aligned_cols=127 Identities=19% Similarity=0.270 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVN 146 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~ 146 (436)
.+.+.+.++.+++.|+.+==+|. |..|.. ....-.+|++.+-....++++.++.|++|++.++.....-.+.+.|..
T Consensus 23 ~~ev~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e 99 (339)
T cd06603 23 QEDVKEVDAGFDEHDIPYDVIWL--DIEHTD-GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKE 99 (339)
T ss_pred HHHHHHHHHHHHHcCCCceEEEE--ChHHhC-CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHH
Confidence 46789999999999988655543 211210 011224677778888999999999999999988643221111233432
Q ss_pred HHhhcC--------CCC-----C---CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 013811 147 WARSQG--------QFL-----T---SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC 207 (436)
Q Consensus 147 W~~~~G--------~~~-----~---~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~ 207 (436)
+.+.| ... + ...| |+||++++.|.+.++.+... .+.+....|.=+|||..
T Consensus 100 -~~~~g~~vk~~~g~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~~~~~~---------~~~g~~g~w~D~~Ep~~ 165 (339)
T cd06603 100 -AKDKGYLVKNSDGGDFEGWCWPGSSSWPD-FLNPEVRDWWASLFSYDKYK---------GSTENLYIWNDMNEPSV 165 (339)
T ss_pred -HHHCCeEEECCCCCEEEEEECCCCcCCcc-CCChhHHHHHHHHHHHHhhc---------ccCCCceEEeccCCccc
Confidence 11111 000 0 1123 57899999999999887632 12233455777999864
No 91
>PRK09936 hypothetical protein; Provisional
Probab=89.09 E-value=23 Score=34.35 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHCCCCEEEE-ccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 66 QRSKVSTAFHEAASHGLTVART-WAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi-~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
+.+.+++.++.+++.|++++=+ |.-- | .+ .|... =.-|-+.++.|.+.||+|++-|.-
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQWt~y-G------~~--~fg~~-~g~La~~l~~A~~~Gl~v~vGL~~ 94 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQWTRY-G------DA--DFGGQ-RGWLAKRLAAAQQAGLKLVVGLYA 94 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeec-c------CC--Ccccc-hHHHHHHHHHHHHcCCEEEEcccC
Confidence 3578999999999999999887 4311 1 00 11111 234678899999999999999963
No 92
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=88.84 E-value=1.4 Score=51.03 Aligned_cols=98 Identities=9% Similarity=0.067 Sum_probs=60.8
Q ss_pred CEEeeCCeEEECC-eEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEcc-ccCC----CCC---CCccCC
Q 013811 32 FIRTRGSHFLLNG-NLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWA-FSDG----GYR---PLQRSP 102 (436)
Q Consensus 32 fv~v~g~~f~~nG-kp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~-~~d~----~~~---~lq~~p 102 (436)
++.|. ..|.+|| +.+-+.|++..-.-. ---+.-..+++.|+.++++|+|+|=+-. +.-+ .|. .++-.|
T Consensus 98 y~~V~-P~L~i~~~~~lPl~~i~iqTvls--K~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP 174 (1464)
T TIGR01531 98 YFVVL-PMLYINADKFLPLDSIALQTVLA--KLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQ 174 (1464)
T ss_pred EEEeC-CeeEECCCcccCcCceeeeeehh--hhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcCh
Confidence 44444 6777888 888888888631100 0001225799999999999999999833 2111 111 111122
Q ss_pred CCCC-hhhhhhHHHHHHHHHHc-CCEEEEecc
Q 013811 103 GSYN-EQMFKGLDFVIAEARKY-GIKLILSLA 132 (436)
Q Consensus 103 g~~~-~~~l~~lD~~i~~a~~~-Gi~vil~l~ 132 (436)
--+. +...+.+..+|++|++. ||++|+++.
T Consensus 175 ~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 175 HFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred hhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 1110 12346788999999995 999999985
No 93
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=88.76 E-value=0.52 Score=47.56 Aligned_cols=118 Identities=15% Similarity=0.317 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc-CCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCCh-----
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR-SPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGK----- 141 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~-~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~----- 141 (436)
..++..|+.||++|+.-|=+-+. |-.++. .|++|| |..++++++.+++.||++.+.+.-+ -+||.
T Consensus 16 ~~~~~~L~~LK~~GV~GVmvdvW----WGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH--~cGgNvgD~~ 86 (402)
T PF01373_consen 16 NALEAQLRALKSAGVDGVMVDVW----WGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFH--QCGGNVGDDC 86 (402)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEE----HHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S---BSSSTTSSS
T ss_pred HHHHHHHHHHHHcCCcEEEEEeE----eeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeee--cCCCCCCCcc
Confidence 47899999999999998887221 222343 478898 8999999999999999997665321 22432
Q ss_pred -hhhhhHHhhcCCC--C--CCC---------CCCCCChHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeec
Q 013811 142 -KQYVNWARSQGQF--L--TSD---------DDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDD-PTIMAWELMN 203 (436)
Q Consensus 142 -~~y~~W~~~~G~~--~--~~~---------~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~-p~I~~weL~N 203 (436)
-..|.|..+.+.. + .+. ...+.... .+.|.++++.+.++ |++. ..|...+++=
T Consensus 87 ~IpLP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~--------f~~~~~~I~~I~vgl 154 (402)
T PF01373_consen 87 NIPLPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDN--------FSDYLSTITEIQVGL 154 (402)
T ss_dssp EB-S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHH--------CHHHHTGEEEEEE--
T ss_pred CCcCCHHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHH--------HHHHHhhheEEEecc
Confidence 1346787542211 0 000 01222334 78888888888887 4443 3455555543
No 94
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=87.91 E-value=1.4 Score=48.69 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEcc-cc--CC---CCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWA-FS--DG---GYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~-~~--d~---~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+-..+.+.+++++++|+++|=+-. +. .+ +|. .+.+.-| ..+.|+.++++|+++||+||+++.
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lG-----t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELG-----GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCC-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 346788999999999999998733 21 11 111 1222222 256789999999999999999985
No 95
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=87.82 E-value=1.4 Score=48.96 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccC---C---CCC-----CCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSD---G---GYR-----PLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d---~---~~~-----~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
-..+.+.+++++++|+|+|=+-.+.. + +|. .+.+.-| ..+.|+.++++|+++||+||+++.
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lG-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELG-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCC-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 46789999999999999998833211 1 111 1222222 246789999999999999999986
No 96
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=87.47 E-value=9.9 Score=37.93 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhH--HHHHHHHHHcCCEEEEecccCCCCC---CCh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGL--DFVIAEARKYGIKLILSLANNYDSF---GGK 141 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~l--D~~i~~a~~~Gi~vil~l~~~w~~~---gg~ 141 (436)
.+.+.+.++.+++.|+.+==+|. |..|.. ....-.+|++.+-.. +.+|+++++.|++|++.++-+.... ...
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~ 99 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWN--DIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSY 99 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEE--Cccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCC
Confidence 46789999999999988655543 222311 001234677777777 8999999999999999875432210 111
Q ss_pred hhhhhHHhh-------cCCCC-----C---CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCC
Q 013811 142 KQYVNWARS-------QGQFL-----T---SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPR 206 (436)
Q Consensus 142 ~~y~~W~~~-------~G~~~-----~---~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~ 206 (436)
..|.+-... .|.+. + ...+ |+||++++.|.+.++.++.. ++-+ ..|.=+|||.
T Consensus 100 ~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~~~~~~--------~Gvd---g~w~D~~Ep~ 167 (339)
T cd06602 100 PPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPD-FLNPNTQEWWTDEIKDFHDQ--------VPFD---GLWIDMNEPS 167 (339)
T ss_pred HHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcC-CCCHHHHHHHHHHHHHHHhc--------CCCc---EEEecCCCCc
Confidence 222211110 11110 0 1123 68899999999999887764 2222 3477799996
Q ss_pred CCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 207 CTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 207 ~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
.......-....+.+.+.+.+++....+++.
T Consensus 168 ~~~~~hN~y~~~~~~~~~~~~~~~~~~r~~~ 198 (339)
T cd06602 168 NFYDVHNLYGLSEAIATYKALQSIPGKRPFV 198 (339)
T ss_pred hHhhhcchhhHHHHHHHHHHHHhcCCCCCEE
Confidence 4310000111233455566777652233443
No 97
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=87.44 E-value=27 Score=34.99 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCC-------CCCcc-----CCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGY-------RPLQR-----SPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~-------~~lq~-----~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
.+.+++.++.|+..++|++-++.-.+-+| |.+.. ..|.|. -+.+..+++-|+++||.||+.+-..
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT---~~di~eiv~yA~~rgI~vIPEID~P 93 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYT---PEDVKEIVEYARLRGIRVIPEIDTP 93 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceEC---HHHHHHHHHHHHHcCCEEEEeccCc
Confidence 47899999999999999999865433233 22211 012344 4567899999999999999987421
Q ss_pred CCCCCC-hhhhhhHHhhc-------CCCCCCCCCCCCChHHHHHHHHHHHHHHhc
Q 013811 135 YDSFGG-KKQYVNWARSQ-------GQFLTSDDDFFRNPVVKGYYKNLIKTVLNR 181 (436)
Q Consensus 135 w~~~gg-~~~y~~W~~~~-------G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r 181 (436)
.+.+. ...|+.-.... +.......--.++|++.+..++.++++++-
T Consensus 94 -GH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~l 147 (348)
T cd06562 94 -GHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSEL 147 (348)
T ss_pred -hhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHh
Confidence 11110 01111110000 000000011134678888888888888875
No 98
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.09 E-value=24 Score=35.47 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCC-------CCCcc----C-----------------CCCCChhhhhhHHHHHH
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGY-------RPLQR----S-----------------PGSYNEQMFKGLDFVIA 118 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~-------~~lq~----~-----------------pg~~~~~~l~~lD~~i~ 118 (436)
.+.+++.++.|+..++|++-++...+-+| |.|.. + .|.|. -+.+..+++
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~ 93 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIVA 93 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHHH
Confidence 47899999999999999999866433223 22210 0 13344 456789999
Q ss_pred HHHHcCCEEEEecccCCCCCCChhh----hhhHHhhcCCC--------CCCCCCCCCChHHHHHHHHHHHHHHhc
Q 013811 119 EARKYGIKLILSLANNYDSFGGKKQ----YVNWARSQGQF--------LTSDDDFFRNPVVKGYYKNLIKTVLNR 181 (436)
Q Consensus 119 ~a~~~Gi~vil~l~~~w~~~gg~~~----y~~W~~~~G~~--------~~~~~~f~~~~~~~~~~~~~v~~iv~r 181 (436)
.|+++||.||+.+-. .|.... |+.-.. .+.. .....--.++|+..+..++.++++++-
T Consensus 94 yA~~rgI~VIPEID~----PGH~~a~l~~~pel~~-~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~l 163 (357)
T cd06563 94 YAAERGITVIPEIDM----PGHALAALAAYPELGC-TGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAEL 163 (357)
T ss_pred HHHHcCCEEEEecCC----chhHHHHHHhCccccC-CCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 999999999998742 122211 111100 0000 000111235678888888888888875
No 99
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=87.08 E-value=18 Score=36.87 Aligned_cols=178 Identities=18% Similarity=0.263 Sum_probs=91.4
Q ss_pred EEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCC----ccCCC--CCChhhh-hhHHHHHHHH
Q 013811 48 FANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPL----QRSPG--SYNEQMF-KGLDFVIAEA 120 (436)
Q Consensus 48 ~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~l----q~~pg--~~~~~~l-~~lD~~i~~a 120 (436)
...|+|.|+.... + .+.+.+.+.++.++++|++.+=+ .| +|..- ...-| ..|++.| ..|..+++.+
T Consensus 41 ~pv~~nsW~~~~~--d-~~e~~i~~~a~~~~~~G~e~fvi---DD-GW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i 113 (394)
T PF02065_consen 41 PPVGWNSWEAYYF--D-ITEEKILELADAAAELGYEYFVI---DD-GWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYI 113 (394)
T ss_dssp --EEEESHHHHTT--G---HHHHHHHHHHHHHHT-SEEEE----S-SSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHH
T ss_pred CceEEEcccccCc--C-CCHHHHHHHHHHHHHhCCEEEEE---cC-ccccccCCCcccCCceeEChhhhCCcHHHHHHHH
Confidence 4467887533221 2 24578899999999999996655 33 34210 00112 1233333 4689999999
Q ss_pred HHcCCEEEEecccCC--CCCCChhhhhhHHhhc-CCCCC-CCC---CCCCChHHHHHHHHHHHHHHhccccccccccCCC
Q 013811 121 RKYGIKLILSLANNY--DSFGGKKQYVNWARSQ-GQFLT-SDD---DFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDD 193 (436)
Q Consensus 121 ~~~Gi~vil~l~~~w--~~~gg~~~y~~W~~~~-G~~~~-~~~---~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~ 193 (436)
++.||+.-|-+--.- ..+.=...++.|.... +.... ..+ --+++|+++++..+.+..+++. ++ -
T Consensus 114 ~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~--------~g-i 184 (394)
T PF02065_consen 114 HSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE--------WG-I 184 (394)
T ss_dssp HHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH--------TT--
T ss_pred HHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh--------cC-C
Confidence 999999977652100 0000011245665321 11100 111 1257899999999999888876 32 1
Q ss_pred CcEEEEEeecCCCCCCCCC-hHHHHHHH---HHHHHHhhccCCCCEEEeCCCc
Q 013811 194 PTIMAWELMNEPRCTSDPS-GRTIQAWI---TEMASYVKSIDRNHLLEAGLEG 242 (436)
Q Consensus 194 p~I~~weL~NEp~~~~~~~-~~~~~~w~---~~~~~~Ir~~Dp~~lV~vG~~g 242 (436)
.-+=|+..-......... ++.+.+.. -++.+.+|+.-|+.+|...+.|
T Consensus 185 -dYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 185 -DYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp -SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred -CEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 123366533333222211 12233322 3577888999999998866544
No 100
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=87.00 E-value=2.1 Score=42.23 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=78.7
Q ss_pred chhhhHHHHHHHHHHCCCCEEEEccccC---------CC-----------CCC---------CccCCCCCC----hhhhh
Q 013811 65 SQRSKVSTAFHEAASHGLTVARTWAFSD---------GG-----------YRP---------LQRSPGSYN----EQMFK 111 (436)
Q Consensus 65 ~~~~~~~~~l~~l~~~G~N~vRi~~~~d---------~~-----------~~~---------lq~~pg~~~----~~~l~ 111 (436)
++-+++++.|+.|+=.|+|..=.+.-.+ -+ .|+ ++.--|... ++.++
T Consensus 16 WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~ 95 (333)
T PF05089_consen 16 WDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAE 95 (333)
T ss_dssp --HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHH
Confidence 3557999999999999999887654211 00 011 111112122 23333
Q ss_pred hHHHHHHHHHHcCCEEEEecccCCCCCCC-hhhhh--------hHHhhcCCCCCCCCCC--CCChHHHHHHHHHHHHHHh
Q 013811 112 GLDFVIAEARKYGIKLILSLANNYDSFGG-KKQYV--------NWARSQGQFLTSDDDF--FRNPVVKGYYKNLIKTVLN 180 (436)
Q Consensus 112 ~lD~~i~~a~~~Gi~vil~l~~~w~~~gg-~~~y~--------~W~~~~G~~~~~~~~f--~~~~~~~~~~~~~v~~iv~ 180 (436)
.=.++++.+++.||..||.=+..--. .. ...|| .|.. . ....| .+||-..+.-+.++++..+
T Consensus 96 Lq~kIl~RmreLGm~PVLPaF~G~VP-~~~~~~~P~a~i~~~~~W~~---f---~~~~~L~P~dplF~~i~~~F~~~q~~ 168 (333)
T PF05089_consen 96 LQKKILDRMRELGMTPVLPAFAGHVP-RAFKRKYPNANITRQGNWNG---F---CRPYFLDPTDPLFAEIAKLFYEEQIK 168 (333)
T ss_dssp HHHHHHHHHHHHT-EEEEE--S-EE--TTHHHHSTT--EE---EETT---E---E--EEE-SS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCCcCCCCC-hHHHhcCCCCEEeeCCCcCC---C---CCCceeCCCCchHHHHHHHHHHHHHH
Confidence 34689999999999999975421000 00 01111 1110 0 00011 1456666777788888888
Q ss_pred ccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEe
Q 013811 181 RYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEA 238 (436)
Q Consensus 181 r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~v 238 (436)
. |+ ...+.+-+..||-..... ..+.+.+-.+.+.+.+++.||+..-.+
T Consensus 169 ~--------yG-~~~~Y~~D~FnE~~p~~~-~~~~l~~~s~~v~~am~~~dp~AvWvm 216 (333)
T PF05089_consen 169 L--------YG-TDHIYAADPFNEGGPPSG-DPEYLANVSKAVYKAMQAADPDAVWVM 216 (333)
T ss_dssp H--------H----SEEE--TTTTS---TT-S---HHHHHHHHHHHHHHH-TT-EEEE
T ss_pred h--------cC-CCceeCCCccCCCCCCCC-chHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 7 88 667999999999987653 234477788889999999999986554
No 101
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=86.31 E-value=1.9 Score=47.31 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=38.7
Q ss_pred HHHHHHHCCCCEEEEccccCC---------------CCCCC---ccCCCCCCh-hhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 73 AFHEAASHGLTVARTWAFSDG---------------GYRPL---QRSPGSYNE-QMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 73 ~l~~l~~~G~N~vRi~~~~d~---------------~~~~l---q~~pg~~~~-~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.|+.||++|+|+|=+-...+. +|.+. .+.| .|.. ...+.|..+|++|+++||+||+++.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~-~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEP-RYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccCh-hhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 489999999999998332111 11110 1111 1210 1256799999999999999999985
No 102
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=86.24 E-value=1.5 Score=45.87 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccC-----CCC-----CCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSD-----GGY-----RPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d-----~~~-----~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+-.-+.+-|++++++|+++|=+-.+-. .+| ..+.+.- ..++.++.++++|+++||+||+++.
T Consensus 27 dl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~-----Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 27 DLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHF-----GTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred cHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCccc-----CCHHHHHHHHHHHHHCCCEEEEEec
Confidence 334566899999999999997732211 111 1112211 2367788999999999999999985
No 103
>PLN02784 alpha-amylase
Probab=86.02 E-value=4.8 Score=44.67 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCC----CCC-----CCccCCCCCChhhhhhH
Q 013811 43 NGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDG----GYR-----PLQRSPGSYNEQMFKGL 113 (436)
Q Consensus 43 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~----~~~-----~lq~~pg~~~~~~l~~l 113 (436)
+|..+.+-|++. -... +..--..+.+.++.++++|+++|=+...... +|. .+.+.-| ..+.|
T Consensus 500 ~~~eVmlQgF~W--ds~~--dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yG-----T~~EL 570 (894)
T PLN02784 500 SGFEILCQGFNW--ESHK--SGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYG-----TIDEL 570 (894)
T ss_pred CCceEEEEeEEc--CcCC--CCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcC-----CHHHH
Confidence 567788889883 2211 1001246788899999999999988543211 121 1111111 24578
Q ss_pred HHHHHHHHHcCCEEEEecc
Q 013811 114 DFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 114 D~~i~~a~~~Gi~vil~l~ 132 (436)
..+|++|+++||+||+++.
T Consensus 571 k~LI~a~H~~GIkVIlDiV 589 (894)
T PLN02784 571 KDLVKSFHEVGIKVLGDAV 589 (894)
T ss_pred HHHHHHHHHCCCEEEEEEC
Confidence 9999999999999999974
No 104
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=85.54 E-value=2.7 Score=41.91 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCC-hHHHHHHHHHHHHHHhccccccccccCCC
Q 013811 115 FVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRN-PVVKGYYKNLIKTVLNRYNTFTGIHYKDD 193 (436)
Q Consensus 115 ~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~-~~~~~~~~~~v~~iv~r~n~~tg~~yk~~ 193 (436)
.+++.|+++|++|+-+++..|. ++. .|.. .+..+ ++.+..+.+-+-+|++. |+=+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~--~~~----~~~~----------~lL~~~~~~~~~~a~kLv~lak~--------yGfD 105 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWT--GQV----EWLE----------DFLKKDEDGSFPVADKLVEVAKY--------YGFD 105 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCC--Cch----HHHH----------HHhccCcccchHHHHHHHHHHHH--------hCCC
Confidence 5788999999999999887654 222 2221 23334 66667777778888887 6555
Q ss_pred CcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 194 PTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 194 p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
+|.|-=|-........+.+.+|++++.+..|+..|+-.|.
T Consensus 106 ----Gw~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 106 ----GWLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred ----ceEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 3444333333111135789999999999999999987775
No 105
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=85.47 E-value=1.9 Score=51.30 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccC---C---CC-----CCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSD---G---GY-----RPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d---~---~~-----~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
-..+.+.|++++++|+|+|=+-.+.. + +| ..+.|.-| ..+.|+.++++|+++||+||+++.-
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG-----~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIG-----GEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccC-----CHHHHHHHHHHHHHCCCEEEEEecc
Confidence 35788999999999999997732211 1 11 12222222 3667899999999999999999863
No 106
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=85.24 E-value=2.7 Score=41.87 Aligned_cols=150 Identities=18% Similarity=0.244 Sum_probs=85.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc-------CCC---------CCChhhhhhHHHHHHHHHHcCCEEEEe
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR-------SPG---------SYNEQMFKGLDFVIAEARKYGIKLILS 130 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~-------~pg---------~~~~~~l~~lD~~i~~a~~~Gi~vil~ 130 (436)
.+.+++.++.|+..++|++-++.-.+-.|+ ++. ..| .|. -+.++.+++.|+++||.||+.
T Consensus 17 ~~~ik~~id~ma~~k~N~lhlhl~D~~~~~-~~~~~~p~l~~~ga~~~~~~~~~yT---~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 17 VDTIKRLIDQMAYYKLNVLHLHLSDDQGFR-LESKSYPELTEKGAYRPSDAGGYYT---KEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSTCB--BEBSTSTHHHHTTTESTTCTESEBE---HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCCCc-cccCCCccccccCccccccccccCC---HHHHHHHHHHHHHcCCceeee
Confidence 478999999999999999998654332232 111 112 344 356789999999999999998
Q ss_pred cccCCCCCCChhhhhhHHhhcCCC-------C--C---C---CCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCc
Q 013811 131 LANNYDSFGGKKQYVNWARSQGQF-------L--T---S---DDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPT 195 (436)
Q Consensus 131 l~~~w~~~gg~~~y~~W~~~~G~~-------~--~---~---~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~ 195 (436)
+-. .|.......+...-+.. . . . ..-..++|++.+..++.+++++.- +. .+.
T Consensus 93 id~----PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~--------f~-~~~ 159 (351)
T PF00728_consen 93 IDT----PGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADL--------FP-SKY 159 (351)
T ss_dssp EEE----SSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHH--------HT-SSE
T ss_pred ccC----chHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhh--------CC-CCe
Confidence 743 23222222221111110 0 0 0 011235688888888899998877 55 332
Q ss_pred EEEEEe-ecCCCCC---CCC------------C-hHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 196 IMAWEL-MNEPRCT---SDP------------S-GRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 196 I~~weL-~NEp~~~---~~~------------~-~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
+.| +-|.... .++ + .+....+++++.+.+++.... ++.
T Consensus 160 ---iHiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~-~~~ 214 (351)
T PF00728_consen 160 ---IHIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK-PII 214 (351)
T ss_dssp ---EEEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE-EEE
T ss_pred ---EEeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-EEE
Confidence 345 4555421 000 0 123445678889999987665 444
No 107
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=85.04 E-value=2 Score=50.12 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCCEEEEcc-ccCCC--------------CCCC---ccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 72 TAFHEAASHGLTVARTWA-FSDGG--------------YRPL---QRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 72 ~~l~~l~~~G~N~vRi~~-~~d~~--------------~~~l---q~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+.|+++|++|+|+|=+-. +.... |... .+.| .|.....+.+..+|++|+++||+||+++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp-~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDP-RLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcCh-hhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 568899999999999833 21100 1110 1111 12112456899999999999999999975
No 108
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=84.48 E-value=42 Score=33.86 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe--ecCCCCCCCC---------ChHHHHHHHHHH-HHHhhccCC-
Q 013811 166 VVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWEL--MNEPRCTSDP---------SGRTIQAWITEM-ASYVKSIDR- 232 (436)
Q Consensus 166 ~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL--~NEp~~~~~~---------~~~~~~~w~~~~-~~~Ir~~Dp- 232 (436)
.+-+.|.+|.-.+++. |..+ .|..|.| .|||....+. +++.-+.+++.- --++++...
T Consensus 226 ~yhqtya~YfvkFlea--------Y~~~-gi~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~ 296 (518)
T KOG2566|consen 226 IYHQTYARYFVKFLEA--------YAKH-GIQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALASSKTT 296 (518)
T ss_pred hhHHHHHHHHHHHHHH--------HHhc-CceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhhcCCcC
Confidence 3445666666666666 7766 4666876 8999987653 345555555432 233333211
Q ss_pred -CCEEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHH
Q 013811 233 -NHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEH 311 (436)
Q Consensus 233 -~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~ 311 (436)
+.-|.+-..+ . ..-|.|.. .-+....+..+++=+.+|.|.+-..+.. |+....+
T Consensus 297 knvkllilDD~-R--------g~LP~Wad-tvlnDpeAakYv~GIaVHwY~df~~pa~---------------~L~eTh~ 351 (518)
T KOG2566|consen 297 KNVKLLILDDQ-R--------GLLPHWAD-TVLNDPEAAKYVHGIAVHWYQDFLEPAK---------------HLDETHR 351 (518)
T ss_pred CceEEEEecCC-c--------cCCCccch-hhccChhhhhhccceEEEeeccccChhh---------------hhhhHHh
Confidence 2222221111 0 01122210 0011123457888889999987322211 1111111
Q ss_pred -hcCCcEEEEecCCC--CCC-C---CCChHHHHHHHHHHHHHHHHHhhcCCCccceeeccccc--CCCCCCCCCc
Q 013811 312 -ILRKPILLAEFGKS--RKD-P---GYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLT--EGMDAFRDGY 377 (436)
Q Consensus 312 -~~~kPv~i~EfG~~--~~~-~---g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~--~g~~~~~dg~ 377 (436)
..++=|+=+|-..- ..+ + .++ ...+|-.++++. +.. -+.||.=|.+.- .|.++|-++|
T Consensus 352 ~hP~~fifgTEAc~Gy~~~d~v~~Gswd--rae~yasdii~d----lnn--~vtGWtdwNl~Ld~~GGP~wv~nf 418 (518)
T KOG2566|consen 352 KHPNTFIFGTEACAGYKSKDGVDLGSWD--RAEQYASDIITD----LNN--HVTGWTDWNLILDAQGGPNWVSNF 418 (518)
T ss_pred hCCCeEEEeehhccccccccCccccchh--hHHHHHHHHHHh----hhh--hccceeeeeeEecCcCCchhHhcc
Confidence 24555666664321 111 1 122 222343444433 322 578999999874 3456775554
No 109
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=84.26 E-value=31 Score=34.01 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=46.4
Q ss_pred CChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 163 RNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 163 ~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
.+++.++.+.++++.++++ -+.|.-+ .++=+|+..+|.........+.+.++++++++++|+..|+.+|.
T Consensus 141 ~~~~W~~il~~rl~~l~~k--GfDGvfL---D~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 141 WDPEWKAIAFSYLDRVIAQ--GFDGVYL---DLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred ccHHHHHHHHHHHHHHHHc--CCCeEee---ccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4678888888888887765 3444311 23445676666543211134568889999999999999987665
No 110
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=83.10 E-value=23 Score=34.94 Aligned_cols=63 Identities=25% Similarity=0.309 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCC-------CCCcc--C-CCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGY-------RPLQR--S-PGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~-------~~lq~--~-pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.+.+++.++.|+..++|++-++.-.+-+| |.+.. + .|.|.. +.+..+++-|+++||.||+.+-
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEId 89 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEID 89 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEeec
Confidence 47899999999999999999865433233 22211 1 124553 4667899999999999999874
No 111
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=82.60 E-value=3.4 Score=45.02 Aligned_cols=58 Identities=28% Similarity=0.470 Sum_probs=40.4
Q ss_pred HHHHHHCCCCEEEEcc-c--cCC------------CCCCC---ccCCCCCC-----hhhhhhHHHHHHHHHHcCCEEEEe
Q 013811 74 FHEAASHGLTVARTWA-F--SDG------------GYRPL---QRSPGSYN-----EQMFKGLDFVIAEARKYGIKLILS 130 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~-~--~d~------------~~~~l---q~~pg~~~-----~~~l~~lD~~i~~a~~~Gi~vil~ 130 (436)
|+.+|++|+++|.+.. + .+. +|+++ -|. +.|. ...+..++.+|.+++++||.||++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 9999999999999933 2 110 12221 111 1222 235788999999999999999999
Q ss_pred cc
Q 013811 131 LA 132 (436)
Q Consensus 131 l~ 132 (436)
+.
T Consensus 285 VV 286 (697)
T COG1523 285 VV 286 (697)
T ss_pred Ee
Confidence 85
No 112
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=82.54 E-value=10 Score=38.15 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCC
Q 013811 114 DFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDD 193 (436)
Q Consensus 114 D~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~ 193 (436)
+.++..|+++|++|++.-. .+ .....++..++.|.+-+-.++++ |.=+
T Consensus 67 ~~~~~~A~~~~v~v~~~~~--------~~----------------~~~l~~~~~R~~fi~siv~~~~~--------~gfD 114 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGD--------VP----------------LEQISNPTYRTQWIQQKVELAKS--------QFMD 114 (358)
T ss_pred HHHHHHHHHcCCEEEEECc--------cC----------------HHHcCCHHHHHHHHHHHHHHHHH--------hCCC
Confidence 3788999999999987521 00 11245788899898888888887 5444
Q ss_pred CcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeC
Q 013811 194 PTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAG 239 (436)
Q Consensus 194 p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG 239 (436)
---+-||--+.. ...+.+.+..+++++.+.+++..++-+|++.
T Consensus 115 GIdIDwE~p~~~---~~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 115 GINIDIEQPITK---GSPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred eEEEcccCCCCC---CcchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 334456633221 1123567889999999999988777777764
No 113
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.81 E-value=25 Score=36.33 Aligned_cols=157 Identities=10% Similarity=0.097 Sum_probs=99.3
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCC--------------------CC---------CccCCCCCChhh----hhh
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGY--------------------RP---------LQRSPGSYNEQM----FKG 112 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~--------------------~~---------lq~~pg~~~~~~----l~~ 112 (436)
+-+++++.++.|+=+|+|.+=.|...+.-| |+ +..--|...++- +-.
T Consensus 76 ~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~L 155 (666)
T KOG2233|consen 76 GWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLL 155 (666)
T ss_pred chHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHH
Confidence 457899999999999999987763211000 11 111123233321 112
Q ss_pred HHHHHHHHHHcCCEEEEecccCCCCCCChhh-----hh--------hHHhhcCCCCCCCCCC---CCChHHHHHHHHHHH
Q 013811 113 LDFVIAEARKYGIKLILSLANNYDSFGGKKQ-----YV--------NWARSQGQFLTSDDDF---FRNPVVKGYYKNLIK 176 (436)
Q Consensus 113 lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~-----y~--------~W~~~~G~~~~~~~~f---~~~~~~~~~~~~~v~ 176 (436)
=.++|+...+.||.++|.-+.. -.+. || .|..-.. ...-.+ -+||-.++-=..+++
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG-----~VP~al~rlfPesnf~rl~rWn~f~s---~~~C~l~v~P~dplF~eIgs~Flr 227 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAG-----HVPDALERLFPESNFTRLPRWNNFTS---RYSCMLLVSPFDPLFQEIGSTFLR 227 (666)
T ss_pred HHHHHHHHHHcCCCccchhhcc-----ccHHHHHHhCchhceeeccccCCCCc---ceeeeEEccCCcchHHHHHHHHHH
Confidence 2589999999999999875421 1111 11 1110000 000011 135667777788999
Q ss_pred HHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeC
Q 013811 177 TVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAG 239 (436)
Q Consensus 177 ~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG 239 (436)
+.++. |++..+|..=+..||...... .++.+..-..++++..|+.|++..-..-
T Consensus 228 ~~~ke--------fG~~tniy~~DpFNE~~Pp~s-epey~~staaAiyesm~kvdknaVWllQ 281 (666)
T KOG2233|consen 228 HQIKE--------FGGVTNIYSADPFNEILPPES-EPEYVKSTAAAIYESMKKVDKNAVWLLQ 281 (666)
T ss_pred HHHHH--------hCCcccccccCcccccCCCCC-ChHHHHHHHHHHHHHHhccCcceEEeee
Confidence 99999 998889999999999887653 3556777777888899999999876653
No 114
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=79.61 E-value=21 Score=34.27 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=57.2
Q ss_pred EEeeCCeEEE-CCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhh
Q 013811 33 IRTRGSHFLL-NGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFK 111 (436)
Q Consensus 33 v~v~g~~f~~-nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~ 111 (436)
|.+.+ +.+ +|+.+.+.|-+.- .+.+.+.+.-+.+|++|+.++|...+- |+ .+|..|..-.-+
T Consensus 16 ~~~~~--~~~g~~~~~~iaGPCsi---------e~~~~~~~~A~~lk~~g~~~~r~~~~k----pR--Ts~~s~~G~g~~ 78 (266)
T PRK13398 16 VKVGD--VVIGGEEKIIIAGPCAV---------ESEEQMVKVAEKLKELGVHMLRGGAFK----PR--TSPYSFQGLGEE 78 (266)
T ss_pred EEECC--EEEcCCCEEEEEeCCcC---------CCHHHHHHHHHHHHHcCCCEEEEeeec----CC--CCCCccCCcHHH
Confidence 55533 444 4556677787742 234678888899999999999996552 11 123334433355
Q ss_pred hHHHHHHHHHHcCCEEEEecccC
Q 013811 112 GLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 112 ~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
.+..+-+.+++.||.++-++++.
T Consensus 79 gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 79 GLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHHHHHHHHcCCCEEEeeCCh
Confidence 66677778899999999998764
No 115
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=79.35 E-value=36 Score=33.56 Aligned_cols=157 Identities=16% Similarity=0.132 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVN 146 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~ 146 (436)
.+.+.+.++.+++.++.+==+|. |..|-. ....-.+|++.+.....+++.+++.|+++++.++.+...-...+.|.+
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~ 99 (317)
T cd06600 23 QDKVVEVVDIMQKEGFPYDVVFL--DIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLS 99 (317)
T ss_pred HHHHHHHHHHHHHcCCCcceEEE--ChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHH
Confidence 46789999999999988666644 222210 001234678788888999999999999999887643211001112211
Q ss_pred HHh------h-cCCCC-----C--CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCC
Q 013811 147 WAR------S-QGQFL-----T--SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPS 212 (436)
Q Consensus 147 W~~------~-~G~~~-----~--~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~ 212 (436)
=.. . .|.+. + ..---|+||++++.|.+.++.+... + ..-..|.=+|||....+..
T Consensus 100 ~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~--------~---gvdg~w~D~~Ep~~~~~~h 168 (317)
T cd06600 100 GMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNS--------Q---GVDGIWLDMNEPSDFEKVH 168 (317)
T ss_pred HHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhc--------C---CCceEEeeCCCCccHHHhc
Confidence 000 0 11110 0 0112257899999999999887643 2 2223467799996431100
Q ss_pred hHHHHHHHHHHHHHhhccCC-CCEEE
Q 013811 213 GRTIQAWITEMASYVKSIDR-NHLLE 237 (436)
Q Consensus 213 ~~~~~~w~~~~~~~Ir~~Dp-~~lV~ 237 (436)
.-.-..+.+...+.+++..| .++++
T Consensus 169 n~y~~~~~~a~~~~~~~~~~~~r~~~ 194 (317)
T cd06600 169 NLYGLYEAMATAEGFRTSHPRNRIFI 194 (317)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCceE
Confidence 00112344556667776654 33443
No 116
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=79.24 E-value=23 Score=34.86 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=59.0
Q ss_pred HHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHh
Q 013811 70 VSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWAR 149 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~ 149 (436)
-.+..+.+|+.|+..||++-- ++ .+|...+--||.|++.+.|.- -..-
T Consensus 15 p~~vv~l~ks~~i~~vri~d~---------------~~-------~iL~a~a~S~i~v~v~vpN~~--------l~~l-- 62 (310)
T PF00332_consen 15 PCKVVSLLKSNGITKVRIYDA---------------DP-------SILRAFAGSGIEVMVGVPNED--------LASL-- 62 (310)
T ss_dssp HHHHHHHHHHTT--EEEESS-----------------H-------HHHHHHTTS--EEEEEE-GGG--------HHHH--
T ss_pred HHHHHHHHHhcccccEEeecC---------------cH-------HHHHHHhcCCceeeeccChHH--------HHHh--
Confidence 345677789999999998421 22 566777788999999987531 1100
Q ss_pred hcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhc
Q 013811 150 SQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKS 229 (436)
Q Consensus 150 ~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~ 229 (436)
...+.....+++.=+.. |...-.|....++||.-.... ...+..-++.+..++++
T Consensus 63 ---------------a~~~~~A~~Wv~~nv~~--------~~~~~~i~~i~VGnEv~~~~~--~~~lvpAm~ni~~aL~~ 117 (310)
T PF00332_consen 63 ---------------ASSQSAAGSWVRTNVLP--------YLPAVNIRYIAVGNEVLTGTD--NAYLVPAMQNIHNALTA 117 (310)
T ss_dssp ---------------HHHHHHHHHHHHHHTCT--------CTTTSEEEEEEEEES-TCCSG--GGGHHHHHHHHHHHHHH
T ss_pred ---------------ccCHHHHhhhhhhcccc--------cCcccceeeeecccccccCcc--ceeeccHHHHHHHHHHh
Confidence 01122333444443333 665566888899999877542 12333344555555654
Q ss_pred --cCCCCEEEe
Q 013811 230 --IDRNHLLEA 238 (436)
Q Consensus 230 --~Dp~~lV~v 238 (436)
++...-|++
T Consensus 118 ~~L~~~IkVst 128 (310)
T PF00332_consen 118 AGLSDQIKVST 128 (310)
T ss_dssp TT-TTTSEEEE
T ss_pred cCcCCcceecc
Confidence 333344554
No 117
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=78.40 E-value=7.3 Score=41.98 Aligned_cols=42 Identities=33% Similarity=0.752 Sum_probs=32.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeecCCCCCCCC
Q 013811 159 DDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDD-PTIMAWELMNEPRCTSDP 211 (436)
Q Consensus 159 ~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~-p~I~~weL~NEp~~~~~~ 211 (436)
.+| .||+++++++.... ..+ |..+ |+++.|.=||||.....+
T Consensus 475 iDf-~nP~~r~wW~~~fa--fd~--------y~g~t~nl~iWNDMNEPSVFnGP 517 (915)
T KOG1066|consen 475 IDF-INPEARKWWKSQFA--FDR--------YEGSTPNLFIWNDMNEPSVFNGP 517 (915)
T ss_pred ccc-cCHHHHHHHhhhcc--ccc--------ccCCCCceEEeccCCCccccCCC
Confidence 454 46999999988876 445 7666 679999999999987543
No 118
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.89 E-value=19 Score=35.01 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCC--c------cCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCC
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPL--Q------RSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSF 138 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~l--q------~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~ 138 (436)
.+.+++.++.+++.||.+==+|. |..|..- + -..-.+|++.+.....+++++++.|+++++.++-.-..-
T Consensus 24 ~~ev~~v~~~~r~~~iP~D~i~l--D~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~ 101 (292)
T cd06595 24 DEEYLALMDRFKKHNIPLDVLVI--DMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIR 101 (292)
T ss_pred HHHHHHHHHHHHHhCCCccEEEE--ecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccC
Confidence 46789999999999987544433 2223110 0 012347788888899999999999999999886432110
Q ss_pred CChhhhhhHHhhcCCCCCC----CCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC
Q 013811 139 GGKKQYVNWARSQGQFLTS----DDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCT 208 (436)
Q Consensus 139 gg~~~y~~W~~~~G~~~~~----~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~ 208 (436)
.....|.+..+..+..... .-+ +++|++++.|.+.+.+.+.. ...-..|.=+|||...
T Consensus 102 ~~~~~y~~~~~~~~~~~~~~~~~~~D-~tnp~a~~~w~~~~~~~~~~-----------~Gidg~W~D~~E~~~~ 163 (292)
T cd06595 102 AHEDQYPEMAKALGVDPATEGPILFD-LTNPKFMDAYFDNVHRPLEK-----------QGVDFWWLDWQQGNRT 163 (292)
T ss_pred CCcHHHHHHHHhcCCCcccCCeEEec-CCCHHHHHHHHHHHHHHHHh-----------cCCcEEEecCCCCccc
Confidence 1223465544333321111 123 47899888765555444332 1222346778998653
No 119
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=77.36 E-value=6.5 Score=38.68 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
++.....++.|++.|+. |+|..- +.+. .-++..+..++.++.+|.+.|++||+++.
T Consensus 15 ~~~~~~Yi~~~~~~Gf~--~IFtsl------~~~~--~~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 15 KEKDIAYIDRMHKYGFK--RIFTSL------LIPE--EDAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred chhHHHHHHHHHHcCcc--ceeeec------ccCC--chHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 35677899999999999 654321 1111 13456899999999999999999999974
No 120
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=76.54 E-value=24 Score=34.73 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=41.4
Q ss_pred cchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 64 PSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 64 ~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
|++.++-.+.|+.+++.|+|+.=.-.-.| .+.+- .-.-.|.++.++.|..+++.|++.|+..+..|+-
T Consensus 11 PWs~e~R~~l~~f~~~~kmN~YiYAPKdD-pyhr~-~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 11 PWSHEDRLDLIRFLGRYKMNTYIYAPKDD-PYHRS-KWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEE--TT--TTTTT-TTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred CCCHHHHHHHHHHHHHcCCceEEECCCCC-hHHHh-hhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 55556777889999999999654311112 12110 1122378899999999999999999999999864
No 121
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.67 E-value=5.7 Score=37.95 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+.+++.++.++.+|+.+|+++....+ + ...+...-+...+.|+.+.+.|+++||++.+..+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~-~---~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAG-Y---LTPPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 56778889999999999999654221 1 0111111134567889999999999999887754
No 122
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=75.58 E-value=6.2 Score=39.64 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.+...+.|+.|++.|++ |+|..-. . |-.-.++.++.+..+++.|+++||+|++++.
T Consensus 13 ~~~~~~yi~~a~~~Gf~--~iFTSL~-------i-pe~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 13 FEENKAYIEKAAKYGFK--RIFTSLH-------I-PEDDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp HHHHHHHHHHHHCTTEE--EEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHHHHHHCCCC--EEECCCC-------c-CCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46888999999999999 5543211 0 1112357789999999999999999999985
No 123
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=75.38 E-value=36 Score=33.28 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=74.2
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCC--CCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhh
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPG--SYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQ 143 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg--~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 143 (436)
+.+.+.+.++.+++.|+..=-++. |..| +..-| .+|++.|..+..++++.++.|+++++.+.-.... ..+.
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~i--D~~w---~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~--~s~~ 100 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEI--DDNW---ETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT--DSEN 100 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEe--CCCc---cccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC--CCHH
Confidence 346799999999999986544322 3234 22222 4677778889999999999999999987643211 1112
Q ss_pred hhhHHhhc--------C-CCCC-----CCC--CCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCC
Q 013811 144 YVNWARSQ--------G-QFLT-----SDD--DFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPR 206 (436)
Q Consensus 144 y~~W~~~~--------G-~~~~-----~~~--~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~ 206 (436)
|.. +.+. | .+.. ... -=++||++++.+.+.++.++.. ++= .. .|.=+|||.
T Consensus 101 ~~e-~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~Gv-dg--~w~D~~E~~ 167 (303)
T cd06592 101 FRE-AVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEK--------YGI-DS--FKFDAGEAS 167 (303)
T ss_pred HHh-hhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHH--------hCC-cE--EEeCCCCcc
Confidence 221 0010 1 0000 001 1257899999999999998854 211 11 245589985
No 124
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=75.23 E-value=14 Score=36.72 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=52.2
Q ss_pred CCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHH
Q 013811 43 NGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARK 122 (436)
Q Consensus 43 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~ 122 (436)
+++.+++.|-+. ..+++.+.+.-+.+|+.|.+++|..+|- |+ .+|..|..-..+.|+.+.+.+++
T Consensus 91 ~~~~~~IAGPCs---------iEs~e~~~~~A~~lk~~ga~~~r~~~fK----pR--Tsp~sf~G~g~~gL~~L~~~~~~ 155 (335)
T PRK08673 91 GGKPVVIAGPCS---------VESEEQILEIARAVKEAGAQILRGGAFK----PR--TSPYSFQGLGEEGLKLLAEAREE 155 (335)
T ss_pred CCceEEEEecCc---------cCCHHHHHHHHHHHHHhchhhccCcEec----CC--CCCcccccccHHHHHHHHHHHHH
Confidence 456666777432 1245677788888899999999986662 11 13333333335667777788999
Q ss_pred cCCEEEEecccC
Q 013811 123 YGIKLILSLANN 134 (436)
Q Consensus 123 ~Gi~vil~l~~~ 134 (436)
.||.++-++++.
T Consensus 156 ~Gl~v~tev~d~ 167 (335)
T PRK08673 156 TGLPIVTEVMDP 167 (335)
T ss_pred cCCcEEEeeCCH
Confidence 999999998764
No 125
>PLN02877 alpha-amylase/limit dextrinase
Probab=75.12 E-value=8.5 Score=43.55 Aligned_cols=120 Identities=15% Similarity=0.238 Sum_probs=61.6
Q ss_pred hhhhHHHHHHHHHHcCCEEEEecc-cCCCCCC--C-hhhh---h-hHH---hhcCCCCCCC---CCC-CCChHHHHHHHH
Q 013811 109 MFKGLDFVIAEARKYGIKLILSLA-NNYDSFG--G-KKQY---V-NWA---RSQGQFLTSD---DDF-FRNPVVKGYYKN 173 (436)
Q Consensus 109 ~l~~lD~~i~~a~~~Gi~vil~l~-~~w~~~g--g-~~~y---~-~W~---~~~G~~~~~~---~~f-~~~~~~~~~~~~ 173 (436)
....++.||++|+++||+||+++. |+-...| + ...+ . .|. ...|. +.+. ++. -.++.+++.+.+
T Consensus 464 RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~-~~ns~c~n~~Ase~~mvrklIlD 542 (970)
T PLN02877 464 RIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGF-IENSTCVNNTASEHYMVDRLIVD 542 (970)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCC-cccCCccCCCccCCHHHHHHHHH
Confidence 355689999999999999999974 4321111 0 0000 0 000 00111 0000 011 123567888889
Q ss_pred HHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCCCcc
Q 013811 174 LIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGF 243 (436)
Q Consensus 174 ~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~ 243 (436)
-++..++. |+=|- +-++|+..-.... -......++++....+..|...++..| |||
T Consensus 543 sl~yW~~e--------y~VDG--FRFDlmg~i~~~t---m~~~~~~L~~i~~~~~~~dg~~i~lyG-EgW 598 (970)
T PLN02877 543 DLLNWAVN--------YKVDG--FRFDLMGHLMKRT---MVRAKDALQSLTLERDGVDGSSIYLYG-EGW 598 (970)
T ss_pred HHHHHHHH--------hCCCE--EEEEccccccHHH---HHHHHHHHHHHhhhhcccCCCceEEEE-eCC
Confidence 99999988 75543 4578886654321 112233333333334444533344454 666
No 126
>PRK14565 triosephosphate isomerase; Provisional
Probab=75.11 E-value=19 Score=33.93 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=64.8
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHH----HHHHHcCCEEEEecccCCCCCCChhhhhhHHh
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVI----AEARKYGIKLILSLANNYDSFGGKKQYVNWAR 149 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i----~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~ 149 (436)
...++++|++.+=+ .|++- +-.|+|. |..+ ..|.++||.+|+++-..-+ . .
T Consensus 78 ~~mLkd~G~~~vii-GHSER--------R~~f~Et-----d~~V~~Kv~~al~~gl~pIvCiGE~~e------~-----r 132 (237)
T PRK14565 78 AKMLKECGCSYVIL-GHSER--------RSTFHET-----DSDIRLKAESAIESGLIPIICVGETLE------D-----R 132 (237)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCcCCcC-----HHHHHHHHHHHHHCCCEEEEEcCCCHH------H-----H
Confidence 45789999999988 55542 1223332 4555 7899999999999743210 0 0
Q ss_pred hcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhc
Q 013811 150 SQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKS 229 (436)
Q Consensus 150 ~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~ 229 (436)
+.| ...+...+.++..+.- . .+-|++| ||-+...+....-.+-++++.+.||+
T Consensus 133 ~~~-------------~~~~~~~~Ql~~~l~~--------~--~~ivIAY----EPvWAIGtG~~a~~e~i~~~~~~Ir~ 185 (237)
T PRK14565 133 ENG-------------MTKDVLLEQCSNCLPK--------H--GEFIIAY----EPVWAIGGSTIPSNDAIAEAFEIIRS 185 (237)
T ss_pred Hcc-------------ChHHHHHHHHHHHhcC--------C--CCEEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 011 1223333344444432 1 3456666 45443221111223446888899999
Q ss_pred cCCCCEEEeCC
Q 013811 230 IDRNHLLEAGL 240 (436)
Q Consensus 230 ~Dp~~lV~vG~ 240 (436)
..++..|..|+
T Consensus 186 ~~~~~~IlYGG 196 (237)
T PRK14565 186 YDSKSHIIYGG 196 (237)
T ss_pred hCCCceEEEcC
Confidence 87777777664
No 127
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=74.02 E-value=62 Score=30.53 Aligned_cols=126 Identities=19% Similarity=0.231 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCC--CCChHHHHHHHHHHHHHHhccccccc
Q 013811 110 FKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDF--FRNPVVKGYYKNLIKTVLNRYNTFTG 187 (436)
Q Consensus 110 l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f--~~~~~~~~~~~~~v~~iv~r~n~~tg 187 (436)
++.....+..+++.|++|++++.. |.. + ..| ..+++.++.|.+.+..++.+
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg-~~~--~------------------~~~~~~~~~~~~~~fa~~l~~~v~~------ 102 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILG-NHL--G------------------AGFANNLSDAAAKAYAKAIVDTVDK------ 102 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECC-CCC--C------------------CCccccCCHHHHHHHHHHHHHHHHH------
Confidence 455677888899999999999743 111 0 011 24566778888888888877
Q ss_pred cccCCCCcEEEEEeecCCCCCC-CCChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhh
Q 013811 188 IHYKDDPTIMAWELMNEPRCTS-DPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVA 266 (436)
Q Consensus 188 ~~yk~~p~I~~weL~NEp~~~~-~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~ 266 (436)
|.=|---+-||-.+...... ..+.+.+..+++++.+.+.. .+.++++...+.+.. . +.
T Consensus 103 --yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~--~~kllt~~~~~~~~~-------------~--~~-- 161 (255)
T cd06542 103 --YGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGP--TDKLLTIDGYGQALS-------------N--DG-- 161 (255)
T ss_pred --hCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCc--CCcEEEEEecCCchh-------------c--CH--
Confidence 65554445566544321110 11245566666666666532 266777643221000 0 11
Q ss_pred hcCCCCcceEEeecCCC
Q 013811 267 NNLIPGIDFATVHSYPD 283 (436)
Q Consensus 267 ~~~~~~iD~~s~H~Y~~ 283 (436)
....+.+|++.+-.|..
T Consensus 162 ~~~~~~vDyv~~~~y~~ 178 (255)
T cd06542 162 EEVSPYVDYVIYQYYGS 178 (255)
T ss_pred HHHHHhCCEEEeeccCC
Confidence 12246899988777754
No 128
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.67 E-value=28 Score=31.11 Aligned_cols=130 Identities=15% Similarity=0.085 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCC--ccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhh
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPL--QRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYV 145 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~l--q~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 145 (436)
..+++..+.+++.|+..+=++.......... ....-. .+..++.+...++.|++.|.+.+......+...
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~------- 98 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG------- 98 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS-------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccc-------
Confidence 4677888889999999777754332211100 001111 356688999999999999999876532210000
Q ss_pred hHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHH
Q 013811 146 NWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMAS 225 (436)
Q Consensus 146 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~ 225 (436)
.-...++..+.+.+.++.+++. -+.+.-.++.| |.|...... ... ++++..
T Consensus 99 --------------~~~~~~~~~~~~~~~l~~l~~~--------a~~~gv~i~lE--~~~~~~~~~-~~~----~~~~~~ 149 (213)
T PF01261_consen 99 --------------PEDDTEENWERLAENLRELAEI--------AEEYGVRIALE--NHPGPFSET-PFS----VEEIYR 149 (213)
T ss_dssp --------------TTSSHHHHHHHHHHHHHHHHHH--------HHHHTSEEEEE---SSSSSSSE-ESS----HHHHHH
T ss_pred --------------cCCCHHHHHHHHHHHHHHHHhh--------hhhhcceEEEe--cccCccccc-hhh----HHHHHH
Confidence 0012235566677777777776 44444455555 444443211 000 466677
Q ss_pred HhhccCCCC
Q 013811 226 YVKSIDRNH 234 (436)
Q Consensus 226 ~Ir~~Dp~~ 234 (436)
.++++++.+
T Consensus 150 ~l~~~~~~~ 158 (213)
T PF01261_consen 150 LLEEVDSPN 158 (213)
T ss_dssp HHHHHTTTT
T ss_pred HHhhcCCCc
Confidence 777777544
No 129
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=73.56 E-value=12 Score=40.40 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEEccc-cCCC-CC-CCcc-CCCCC-------Chh--hhhhHHHHHHHHHHcCCEEEEecc
Q 013811 71 STAFHEAASHGLTVARTWAF-SDGG-YR-PLQR-SPGSY-------NEQ--MFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~-~d~~-~~-~lq~-~pg~~-------~~~--~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+...++++++|++.|=+-.+ .-|+ |- .+-| ..|.| |+. -++.++.++++|+++||+||++|.
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 35678999999999887332 1110 00 0001 11222 222 367789999999999999999996
No 130
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=73.16 E-value=8.2 Score=36.45 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
+.+++.++.++++|+..|+++..... -....-...+...+.|..+.+.|+++||.+.+..++.
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~----~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRP----AGVSPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCC----CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 56778899999999999998542110 0000001113345678889999999999999887654
No 131
>PLN02229 alpha-galactosidase
Probab=72.94 E-value=14 Score=37.84 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=48.0
Q ss_pred EEEeecccccccccCCcchhhhHHHHHHH-----HHHCCCCEEEEccccCCCCCCC-ccCCCC--CChhhh-hhHHHHHH
Q 013811 48 FANGFNAYWLMYVASDPSQRSKVSTAFHE-----AASHGLTVARTWAFSDGGYRPL-QRSPGS--YNEQMF-KGLDFVIA 118 (436)
Q Consensus 48 ~~~G~N~~~~~~~~~~~~~~~~~~~~l~~-----l~~~G~N~vRi~~~~d~~~~~l-q~~pg~--~~~~~l-~~lD~~i~ 118 (436)
-..|.|.|...... -+.+.+++..+. ++++|.+.|=+ |.+|..- ..+.|. .|++.| ..|..+.+
T Consensus 63 PpmGWnSWn~~~~~---i~E~~i~~~ad~~v~~Gl~~~Gy~yv~i----DDgW~~~~rd~~G~l~~d~~rFP~G~k~lad 135 (427)
T PLN02229 63 PQMGWNSWNFFACN---INETVIKETADALVSTGLADLGYIHVNI----DDCWSNLKRDSKGQLVPDPKTFPSGIKLLAD 135 (427)
T ss_pred CCceEEchhhhCcc---cCHHHHHHHHHHHHHhHHHhCCCEEEEE----cCCcCCCCcCCCCCEEEChhhcCCcHHHHHH
Confidence 45788875433221 133566666666 48899998776 3334211 011232 244444 46899999
Q ss_pred HHHHcCCEEEEeccc
Q 013811 119 EARKYGIKLILSLAN 133 (436)
Q Consensus 119 ~a~~~Gi~vil~l~~ 133 (436)
..++.||+.=|....
T Consensus 136 yiH~~GlKfGIy~d~ 150 (427)
T PLN02229 136 YVHSKGLKLGIYSDA 150 (427)
T ss_pred HHHHCCCceEEeccC
Confidence 999999999886543
No 132
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.84 E-value=8.5 Score=36.88 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.+.+++.++.++.+|++.||++.+.. + ..+.+...-+...+.|+.+.+.|+++||++.+..+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDV--Y--YEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccc--c--cccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 35678889999999999999854311 0 01111001134556789999999999999988754
No 133
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=72.40 E-value=6.6 Score=34.05 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCEEeeC-CeEEECCeEEEEEeecccccccc-------cCCcchhhhHHHHHHHHH
Q 013811 7 AFAIFLAFFIHRQSFNVLHVEAGDGFIRTRG-SHFLLNGNLYFANGFNAYWLMYV-------ASDPSQRSKVSTAFHEAA 78 (436)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~fv~v~g-~~f~~nGkp~~~~G~N~~~~~~~-------~~~~~~~~~~~~~l~~l~ 78 (436)
+++.+++|+.++++...+...++.+.|.|.. +.+.++|+.|.+.-+|...+..- +...+.++.-...++.++
T Consensus 6 l~~~~~~~~p~~~~AHnlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk 85 (184)
T COG3054 6 LLALLCLLLPMMASAHNLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIK 85 (184)
T ss_pred HHHHHHHHhHHHHHHhhcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccchhhhchHHHHHHH
Confidence 3444444444444444444555555677764 67999999888887776444321 111123455667788888
Q ss_pred HCCCCEEEE
Q 013811 79 SHGLTVART 87 (436)
Q Consensus 79 ~~G~N~vRi 87 (436)
+..++..|.
T Consensus 86 ~a~fp~~~Y 94 (184)
T COG3054 86 SAKFPHDRY 94 (184)
T ss_pred hccCChHHc
Confidence 888886664
No 134
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=72.33 E-value=32 Score=33.88 Aligned_cols=125 Identities=15% Similarity=0.224 Sum_probs=72.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccC--CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRS--PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~--pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y 144 (436)
.+.+.+.++.+++.|+.+==++. |..|-. ... .-.+|++.|.....+|++++++|++|++.++-+... +...|
T Consensus 23 ~~ev~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~--~~~~y 97 (319)
T cd06591 23 QEELLDVAKEYRKRGIPLDVIVQ--DWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGP--ETENY 97 (319)
T ss_pred HHHHHHHHHHHHHhCCCccEEEE--echhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCC--CChhH
Confidence 46789999999999876544432 211100 001 223677888889999999999999999977543211 12233
Q ss_pred hhHHhh-------cCCCC----C--CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 013811 145 VNWARS-------QGQFL----T--SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC 207 (436)
Q Consensus 145 ~~W~~~-------~G~~~----~--~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~ 207 (436)
.+-... .|... + ...-=|++|++++.|.+.+++.+.. ...-..|.=+|||..
T Consensus 98 ~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~-----------~Gvdg~w~D~~Ep~~ 162 (319)
T cd06591 98 KEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD-----------KGVDAWWLDAAEPEY 162 (319)
T ss_pred HHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc-----------CCCcEEEecCCCCCc
Confidence 322111 00000 0 1112257899999888777654432 222335777999875
No 135
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=71.29 E-value=15 Score=34.97 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=48.4
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
+++.+.+.-+.++++|++.+|--+|. | ..+|..|..-.++.|..+.+.+++.||.++-++++.
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~k----p--Rts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~ 89 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYK----P--RTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSE 89 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccC----C--CCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 45677777788999999999975442 1 235555665557788999999999999999998764
No 136
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=71.19 E-value=87 Score=34.31 Aligned_cols=166 Identities=12% Similarity=0.184 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCC----CCC-C---ccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC-CCC
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGG----YRP-L---QRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN-YDS 137 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~----~~~-l---q~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~-w~~ 137 (436)
.+.+...|+.++++|+|+|=+=+|++.. ++. + ..-|+. .+.|..+-..+ +.++|++|.-=+.-. ++.
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r--~d~f~~~aw~l--~~r~~v~v~AWmp~~~~~~ 408 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMR--ADLFNRVAWQL--RTRAGVNVYAWMPVLSFDL 408 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccc--cCCcCHHHHHH--HHhhCCEEEEeccceeecc
Confidence 4678899999999999999886765432 211 1 112331 23344444444 889999985432211 100
Q ss_pred CCChhhhhhHHhhcCCCCCCCCCCC-----CChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE------------
Q 013811 138 FGGKKQYVNWARSQGQFLTSDDDFF-----RNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWE------------ 200 (436)
Q Consensus 138 ~gg~~~y~~W~~~~G~~~~~~~~f~-----~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~we------------ 200 (436)
-...+.-..+. ..+.+...+.++| -+|++++...+..+.++.+ .++.|+.|-|+..+--||
T Consensus 409 ~~~~~~~~~~~-~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~-~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~ 486 (671)
T PRK14582 409 DPTLPRVKRLD-TGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGH-AAFDGILFHDDAVLSDYEDASAPAITAYQQ 486 (671)
T ss_pred CCCcchhhhcc-ccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHh-CCCceEEecccccccccccCCHHHHHHHHH
Confidence 00000000110 0011111111221 2689999999999999975 568888888876543322
Q ss_pred --eecCCCCCCCCChHHH-----------HHHHHHHHHHhhccCCCCEEEeC
Q 013811 201 --LMNEPRCTSDPSGRTI-----------QAWITEMASYVKSIDRNHLLEAG 239 (436)
Q Consensus 201 --L~NEp~~~~~~~~~~~-----------~~w~~~~~~~Ir~~Dp~~lV~vG 239 (436)
|........ .+++.+ ..+..++++.+|...|..+.+..
T Consensus 487 ~g~~~~~~~~~-~~~~~~~~wt~~k~~~l~~f~~~l~~~v~~~~~~~~~tar 537 (671)
T PRK14582 487 AGFSGSLSEIR-QNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPQVKTAR 537 (671)
T ss_pred cCCCcchhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccceeec
Confidence 111111100 022333 44556778888888765566543
No 137
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=70.71 E-value=22 Score=35.43 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=53.1
Q ss_pred CcchhHHHHHHHHHHHhhcccccc-cccCCCCCEEeeCCeEEEC-CeE--EEEEeecccccccccCCcchhhhHHHHHHH
Q 013811 1 MRRLHLAFAIFLAFFIHRQSFNVL-HVEAGDGFIRTRGSHFLLN-GNL--YFANGFNAYWLMYVASDPSQRSKVSTAFHE 76 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fv~v~g~~f~~n-Gkp--~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~ 76 (436)
|+.+++.+.++|+|++++.-.... ..--+.+|.+-... -.+ |+. +..+|.|-||--.- .+++--..+.
T Consensus 1 M~~~~~~~~v~v~l~v~lv~a~~~g~~~la~~~~~p~d~--~ddggt~waVLVAGSngyyNYRH------QADvcHAYqi 72 (477)
T KOG1348|consen 1 MAPLMMVWKVLVFLLVLLVRAERRGLPLLASGFARPADD--DDDGGTRWAVLVAGSNGYYNYRH------QADVCHAYQI 72 (477)
T ss_pred CCcchhhHHHHHHHHHHHHhhhhcCCccccccccCcCcC--CccCceeEEEEEecCCcccchhh------hhhHHHHHHH
Confidence 788888877777666655421100 00012223211100 012 233 34678887665321 1467777889
Q ss_pred HHHCCCC--EEEEccccCCCCCCCccCCCC
Q 013811 77 AASHGLT--VARTWAFSDGGYRPLQRSPGS 104 (436)
Q Consensus 77 l~~~G~N--~vRi~~~~d~~~~~lq~~pg~ 104 (436)
++..|+. .|=++++.|...+...|.||.
T Consensus 73 LrkgGikeEnIvv~MYDDIA~~~~NPrpG~ 102 (477)
T KOG1348|consen 73 LRKGGIKEENIVVMMYDDIANNEENPRPGV 102 (477)
T ss_pred HHhcCCCchhEEEEEehhhhcCCCCCCCce
Confidence 9999986 344456666666777888873
No 138
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=70.40 E-value=15 Score=38.20 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCC-------CCCcc----------------------------CCCCCChhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGY-------RPLQR----------------------------SPGSYNEQMFK 111 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~-------~~lq~----------------------------~pg~~~~~~l~ 111 (436)
.+.+++.++.|+..++|++-++.-.+-+| |.|.. ..|.|. -+
T Consensus 21 ~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT---~~ 97 (445)
T cd06569 21 KETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYS---RA 97 (445)
T ss_pred HHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccC---HH
Confidence 47899999999999999999865433223 21110 012344 35
Q ss_pred hHHHHHHHHHHcCCEEEEecc
Q 013811 112 GLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 112 ~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.+..+++.|+++||.||+.+-
T Consensus 98 di~eiv~yA~~rgI~VIPEID 118 (445)
T cd06569 98 DYIEILKYAKARHIEVIPEID 118 (445)
T ss_pred HHHHHHHHHHHcCCEEEEccC
Confidence 668899999999999999874
No 139
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=70.31 E-value=11 Score=36.08 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+.+++.++.++++|++.|+++... .. .....-..-+...+.|..+.+.|+++||++.+..+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~---~~-~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYD---VY-YEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcc---cc-cCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 468899999999999999985321 00 00000001124567888999999999999988754
No 140
>PLN02923 xylose isomerase
Probab=70.08 E-value=89 Score=32.03 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhh----hhHHHHHHHHHHcCCEEEEecccCCCCCCChhh
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMF----KGLDFVIAEARKYGIKLILSLANNYDSFGGKKQ 143 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l----~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 143 (436)
..++..|+.+.++|+..+=++-. .+-|.-... .+.- +.+|.+-+..++.||++...-.|-+.. +.
T Consensus 123 ~k~daaFEf~~kLG~~y~cFHD~------Dl~Peg~sl-~E~~~nld~ivd~~ke~~~~TGikllwgTaNlFsh----Pr 191 (478)
T PLN02923 123 RRMRANFEFLKKLGVDRWCFHDR------DIAPDGKTL-EESNANLDEVVALAKELQEGTKIRPLWGTAQLFKH----PR 191 (478)
T ss_pred HHHHHHHHHHHHhCCCeEccCcc------ccCCCCCCH-HHHHhhHHHHHHHHHHHhHhhCceeeeeccccccC----cc
Confidence 56778889999999998765321 122211111 2222 333455556688999998765554322 12
Q ss_pred hhhHHhhcCCCCCCCCCCCC--ChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC---CCCC--ChHHH
Q 013811 144 YVNWARSQGQFLTSDDDFFR--NPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC---TSDP--SGRTI 216 (436)
Q Consensus 144 y~~W~~~~G~~~~~~~~f~~--~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~---~~~~--~~~~~ 216 (436)
|. .|. +| |++++++-...++.-+.- ++.++...-|+ |. +=|-.- ..+. .-+.+
T Consensus 192 f~-----~GA--------aTspd~dV~ayAaaqvk~ald~-----t~eLGgenYVf-WG-GREGyetllntD~k~e~d~~ 251 (478)
T PLN02923 192 YM-----HGA--------ATSSEVGVYAYAAAQVKKAMEV-----THYLGGENYVF-WG-GREGYQTLLNTDMERELDHL 251 (478)
T ss_pred cc-----CCc--------CCCCCHHHHHHHHHHHHHHHHH-----HHHhCCCeEEe-cC-CccchhhhcccCHHHHHHHH
Confidence 21 121 22 456666555555544321 01144443333 42 111100 0010 12567
Q ss_pred HHHHHHHHHHhhccCCCC
Q 013811 217 QAWITEMASYVKSIDRNH 234 (436)
Q Consensus 217 ~~w~~~~~~~Ir~~Dp~~ 234 (436)
.+++..+.++.|++.=+-
T Consensus 252 a~fl~ma~dY~~~iGf~g 269 (478)
T PLN02923 252 ARFLEAAVAYKKKIGFNG 269 (478)
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 777888888888875443
No 141
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.93 E-value=11 Score=36.29 Aligned_cols=61 Identities=15% Similarity=0.271 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+.+++.++.++++|+..|++..... + ........-+...+.|+.+.+.|+++||.+.+..+
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDV--Y--YEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccc--c--ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 4578889999999999999843211 0 00000000123466788999999999999888765
No 142
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=68.76 E-value=29 Score=34.49 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVN 146 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~ 146 (436)
.+.+++.++.+++.+|-.==+|. |..|-. .-....+|++.|...+.++++.++.|+++++.++-... +|. .
T Consensus 23 ~~ev~~v~~~~r~~~IP~D~i~l--Didy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~-~g~-----~ 93 (332)
T cd06601 23 RSDLEEVVEGYRDNNIPLDGLHV--DVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS-YGG-----G 93 (332)
T ss_pred HHHHHHHHHHHHHcCCCCceEEE--cCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee-cCc-----c
Confidence 36788999999999876444432 222210 01223456777777889999999999999988764322 111 1
Q ss_pred HHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC
Q 013811 147 WARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCT 208 (436)
Q Consensus 147 W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~ 208 (436)
|. + + ....+ |++|++++.+.+..+.+.+. + --..|.=+|||...
T Consensus 94 ~~---~-~-~~~pD-ftnp~ar~wW~~~~~~l~~~---------G---v~~~W~DmnEp~~~ 137 (332)
T cd06601 94 LG---S-P-GLYPD-LGRPDVREWWGNQYKYLFDI---------G---LEFVWQDMTTPAIM 137 (332)
T ss_pred CC---C-C-ceeeC-CCCHHHHHHHHHHHHHHHhC---------C---CceeecCCCCcccc
Confidence 10 1 0 01234 57899999888877766542 1 11258889999754
No 143
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=67.37 E-value=8.2 Score=24.93 Aligned_cols=12 Identities=58% Similarity=0.921 Sum_probs=8.0
Q ss_pred CcchhHHHHHHH
Q 013811 1 MRRLHLAFAIFL 12 (436)
Q Consensus 1 ~~~~~~~~~~~~ 12 (436)
||.|+++|+++|
T Consensus 1 Mk~l~~a~~l~l 12 (36)
T PF08194_consen 1 MKCLSLAFALLL 12 (36)
T ss_pred CceeHHHHHHHH
Confidence 888888555433
No 144
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=66.09 E-value=49 Score=33.32 Aligned_cols=80 Identities=24% Similarity=0.354 Sum_probs=55.4
Q ss_pred EEE-CCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHH
Q 013811 40 FLL-NGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIA 118 (436)
Q Consensus 40 f~~-nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~ 118 (436)
+.+ +|+++++.|-+.- .+.+.+.+.-+.+++.|++++|--.|. | .++|..|..-.++.+..+-+
T Consensus 112 ~~~g~~~~~~iaGpc~i---------E~~~~~~~~A~~lk~~g~~~~r~~~~k----p--Rtsp~~f~g~~~e~l~~L~~ 176 (360)
T PRK12595 112 EVIGDGNQSFIFGPCSV---------ESYEQVEAVAKALKAKGLKLLRGGAFK----P--RTSPYDFQGLGVEGLKILKQ 176 (360)
T ss_pred EEecCCCeeeEEecccc---------cCHHHHHHHHHHHHHcCCcEEEccccC----C--CCCCccccCCCHHHHHHHHH
Confidence 444 5677777776421 234677788888999999999963331 1 12444455444677888889
Q ss_pred HHHHcCCEEEEecccC
Q 013811 119 EARKYGIKLILSLANN 134 (436)
Q Consensus 119 ~a~~~Gi~vil~l~~~ 134 (436)
.|++.||.++-++++.
T Consensus 177 ~~~~~Gl~~~t~v~d~ 192 (360)
T PRK12595 177 VADEYGLAVISEIVNP 192 (360)
T ss_pred HHHHcCCCEEEeeCCH
Confidence 9999999999998764
No 145
>PLN03244 alpha-amylase; Provisional
Probab=65.36 E-value=61 Score=36.06 Aligned_cols=126 Identities=9% Similarity=0.133 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHHcCCEEEEecc-cCCCC--------CCChh-hhhhHHhhcCCCC--CCCCCCCCChHHHHHHHHHHHH
Q 013811 110 FKGLDFVIAEARKYGIKLILSLA-NNYDS--------FGGKK-QYVNWARSQGQFL--TSDDDFFRNPVVKGYYKNLIKT 177 (436)
Q Consensus 110 l~~lD~~i~~a~~~Gi~vil~l~-~~w~~--------~gg~~-~y~~W~~~~G~~~--~~~~~f~~~~~~~~~~~~~v~~ 177 (436)
.+.|.++|++|+++||.|||++. |+... ++|.+ .|-... ..|... ....-.|.++++++...+-++.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~-~~g~~~~WGs~~fnyg~~EVr~FLLsna~y 518 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTG-KRGHHKHWGTRMFKYGDLDVLHFLISNLNW 518 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccC-CCCccCCCCCceecCCCHHHHHHHHHHHHH
Confidence 45688999999999999999975 32211 11111 111000 001000 0112234578899999999999
Q ss_pred HHhccccccccccCCCCcEEEEEeecCC-----CCCCC-CChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 178 VLNRYNTFTGIHYKDDPTIMAWELMNEP-----RCTSD-PSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 178 iv~r~n~~tg~~yk~~p~I~~weL~NEp-----~~~~~-~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
.++.- .+.|..+-.-.+++..+-+.++ ..... ........++..+...|++..|+.+.+
T Consensus 519 WleEy-hIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itI 583 (872)
T PLN03244 519 WITEY-QIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITI 583 (872)
T ss_pred HHHHh-CcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEE
Confidence 99762 2333333333333433322111 00000 011246677888889999999985433
No 146
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=65.35 E-value=39 Score=34.41 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+.+++++||+.+++.||...=+-+.. -++-..+.|..++++|++.|.++++++-
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig~-------------~d~~~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIGS-------------SDSWQPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccc-------------CCcccHHHHHHHHHHHHhcCCEEEEEec
Confidence 45789999999999999977763221 1122257788999999999999999974
No 147
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=65.33 E-value=13 Score=33.25 Aligned_cols=65 Identities=14% Similarity=0.043 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
.+.+++.++.++.+|+..+.++.......... ....--+...+.|+.+.+.|+++|+.+.+..+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~--~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPED--DTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTS--SHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCC--CHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 46788999999999999999975310000000 000011345678899999999999998887654
No 148
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=65.22 E-value=39 Score=32.21 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=32.8
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHH----HHHcCCEEEEeccc
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAE----ARKYGIKLILSLAN 133 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~----a~~~Gi~vil~l~~ 133 (436)
.+.++++|++.+=+ .|++- +-.|+| .|.+|.. |.++||.+|+++-.
T Consensus 79 ~~mLkd~G~~~vii-GHSER--------R~~f~E-----td~~v~~K~~~a~~~gl~pIvCiGE 128 (250)
T PRK00042 79 AEMLKDLGVKYVII-GHSER--------RQYFGE-----TDELVNKKVKAALKAGLTPILCVGE 128 (250)
T ss_pred HHHHHHCCCCEEEe-Ccccc--------cCccCc-----CHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45789999999988 56542 122333 3566666 99999999999743
No 149
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=64.99 E-value=16 Score=34.65 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
.+.+++.++.++++|+..|+++..... ... .+...-+...+.|..+.+.|+++||++.+..+|.
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~~--~~~--~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~ 147 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKTP--AGF--SSEQIHATLVENLRYAANMLMKEDILLLIEPINH 147 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCC--CCC--CHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 355788999999999999998432100 000 0011112345677888999999999998886654
No 150
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=64.90 E-value=44 Score=35.33 Aligned_cols=83 Identities=23% Similarity=0.269 Sum_probs=55.0
Q ss_pred ECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCC--CCccCCCCCChhhhhhHHHHHHH
Q 013811 42 LNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYR--PLQRSPGSYNEQMFKGLDFVIAE 119 (436)
Q Consensus 42 ~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~--~lq~~pg~~~~~~l~~lD~~i~~ 119 (436)
..|+.-|+.|+=- ++. ..|+..+.-+..|+.++++|+++.=. +--| +|. .+ ..--|+-+..+.|..+|+.
T Consensus 11 A~g~r~fiCGVvE---GFY-GRPWt~EQRK~LFrrl~~~gl~tYlY-APKD-DyKHR~~--WRElY~vEEa~~L~~Li~a 82 (891)
T KOG3698|consen 11 AVGNRKFICGVVE---GFY-GRPWTPEQRKHLFRRLNQLGLTTYLY-APKD-DYKHRSL--WRELYNVEEATYLRNLIEA 82 (891)
T ss_pred ccccceeEEEeec---ccc-CCCCCHHHHHHHHHHHHhcccceeee-cccc-hhHHHHH--HHHHhhhHHHHHHHHHHHH
Confidence 3577778888852 111 24666677888899999999995543 2111 110 00 0112666778899999999
Q ss_pred HHHcCCEEEEecc
Q 013811 120 ARKYGIKLILSLA 132 (436)
Q Consensus 120 a~~~Gi~vil~l~ 132 (436)
|++++|..+-.+.
T Consensus 83 Ake~~i~F~YAiS 95 (891)
T KOG3698|consen 83 AKENNINFVYAIS 95 (891)
T ss_pred HHhcCceEEEEcC
Confidence 9999999887664
No 151
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=64.51 E-value=65 Score=31.99 Aligned_cols=126 Identities=19% Similarity=0.256 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVN 146 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~ 146 (436)
.+.+.+.++.+++.|+.+==+|. |..|.. .-..-.+|++.+-....++++.+++|+++++.++.+.....+.+.|.+
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e 99 (339)
T cd06604 23 EEEVREIADEFRERDIPCDAIYL--DIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEE 99 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEE--CchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHH
Confidence 36788999999999988655543 222211 001224677777778899999999999999876533211011122322
Q ss_pred HHh-------hcCCCC-----C--CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 013811 147 WAR-------SQGQFL-----T--SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC 207 (436)
Q Consensus 147 W~~-------~~G~~~-----~--~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~ 207 (436)
=.. ..|.+. + ..--=|++|++++.|.+.++.+++. .--..|.=+|||..
T Consensus 100 ~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~------------Gvdg~w~D~~Ep~~ 162 (339)
T cd06604 100 GLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDL------------GVDGIWNDMNEPAV 162 (339)
T ss_pred HHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhC------------CCceEeecCCCccc
Confidence 100 011110 0 0111257899999998888877632 11224666888864
No 152
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=63.72 E-value=17 Score=32.84 Aligned_cols=67 Identities=9% Similarity=0.026 Sum_probs=36.5
Q ss_pred HHHhhcccccccccCCCCCEEee-CCeEEECCeEEEEEeecc-----------cccccccCCcchhhhHHHHHHHHHHCC
Q 013811 14 FFIHRQSFNVLHVEAGDGFIRTR-GSHFLLNGNLYFANGFNA-----------YWLMYVASDPSQRSKVSTAFHEAASHG 81 (436)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~fv~v~-g~~f~~nGkp~~~~G~N~-----------~~~~~~~~~~~~~~~~~~~l~~l~~~G 81 (436)
|+...++.+-+...+...-|+|+ ++.++++|..+.+..++. ||..... ..+.-.-.|..|++.|
T Consensus 13 ~~~~~~~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~----~c~~e~P~l~~l~~~~ 88 (184)
T TIGR01626 13 IFPSSAWAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTS----AKEXNASLIDAIKAAK 88 (184)
T ss_pred HhHHHHhhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCC----hhhccchHHHHHHHcC
Confidence 33333333333344444568886 467888887777777664 2322221 1122335567778877
Q ss_pred CCE
Q 013811 82 LTV 84 (436)
Q Consensus 82 ~N~ 84 (436)
+..
T Consensus 89 ~~~ 91 (184)
T TIGR01626 89 FPP 91 (184)
T ss_pred CCc
Confidence 765
No 153
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=63.70 E-value=1.1e+02 Score=29.30 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhH
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNW 147 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W 147 (436)
....+.-+.+++.|+...-+........+...+.+. .-++.++.+...++.|++.|..+|. ++.. ...+
T Consensus 52 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~-~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~------~~~~--- 120 (279)
T TIGR00542 52 EQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKA-VRQQGLEIMEKAIQLARDLGIRTIQ-LAGY------DVYY--- 120 (279)
T ss_pred HHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHH-HHHHHHHHHHHHHHHHHHhCCCEEE-ecCc------cccc---
Confidence 445566667777888766652211100110001111 1124678899999999999999775 3211 0000
Q ss_pred HhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCC
Q 013811 148 ARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEP 205 (436)
Q Consensus 148 ~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp 205 (436)
+ -.+++..+.+.+.++++++. -+.+-..++.|..+.+
T Consensus 121 ----~---------~~~~~~~~~~~~~l~~l~~~--------A~~~Gv~l~lE~~~~~ 157 (279)
T TIGR00542 121 ----E---------EHDEETRRRFREGLKEAVEL--------AARAQVTLAVEIMDTP 157 (279)
T ss_pred ----C---------cCCHHHHHHHHHHHHHHHHH--------HHHcCCEEEEeeCCCc
Confidence 0 01355567778888888887 5555666778865443
No 154
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=63.03 E-value=78 Score=32.57 Aligned_cols=126 Identities=20% Similarity=0.318 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCC-hhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGG-KKQYV 145 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg-~~~y~ 145 (436)
.+.+.+.++.+++.|+-+==++.-. .|.. ....-.+|++.+..+..+++.+++.|+++++.++-+-..... ...|.
T Consensus 42 ~~~v~~~i~~~~~~~iP~d~~~iD~--~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~ 118 (441)
T PF01055_consen 42 QDEVREVIDRYRSNGIPLDVIWIDD--DYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYD 118 (441)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-G--GGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHH
T ss_pred HHHHHHHHHHHHHcCCCccceeccc--cccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhh
Confidence 4678999999999998866554321 1211 111235778888899999999999999999988654322111 12333
Q ss_pred hHHhhcCCCCCCC---------------CCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 013811 146 NWARSQGQFLTSD---------------DDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC 207 (436)
Q Consensus 146 ~W~~~~G~~~~~~---------------~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~ 207 (436)
.... .|.-+.+. ---|++|++++.+.+.++.++.. +.=+ ..|.=+|||..
T Consensus 119 ~~~~-~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~Gvd---g~w~D~~E~~~ 183 (441)
T PF01055_consen 119 EAKE-KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDD--------YGVD---GWWLDFGEPSS 183 (441)
T ss_dssp HHHH-TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTT--------ST-S---EEEEESTTTBS
T ss_pred hHhh-cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhc--------cCCc---eEEeecCCccc
Confidence 2221 11111000 01257899999999999888765 3222 35777999986
No 155
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=62.80 E-value=32 Score=37.32 Aligned_cols=219 Identities=18% Similarity=0.261 Sum_probs=91.3
Q ss_pred HHHHHHH--HCC--CCEEEEccccCCC-----CCCCccCCCCCChhhhhhHH-HHHHHHHHcCCEEEEecccCCCCCCCh
Q 013811 72 TAFHEAA--SHG--LTVARTWAFSDGG-----YRPLQRSPGSYNEQMFKGLD-FVIAEARKYGIKLILSLANNYDSFGGK 141 (436)
Q Consensus 72 ~~l~~l~--~~G--~N~vRi~~~~d~~-----~~~lq~~pg~~~~~~l~~lD-~~i~~a~~~Gi~vil~l~~~w~~~gg~ 141 (436)
+.|+.|= ..| ++.+-+=+-.|+. -|.-+..++. +...+... .++++|++++=-+-|+..- |
T Consensus 65 qILd~LFkp~~Gasl~~lKvEiGgD~nst~GtEPshm~~~~d--~n~~RGye~~L~~eAKkrNP~ikl~~L~-W------ 135 (669)
T PF02057_consen 65 QILDYLFKPNFGASLQILKVEIGGDANSTSGTEPSHMHSEDD--ENYFRGYEWWLMAEAKKRNPNIKLYGLP-W------ 135 (669)
T ss_dssp HHHHHHHSTTTSS--SEEEEEE--SSB-SSSB---S-SSTT-----S-SSSHHHHHHHHHHH-TT-EEEEEE-S------
T ss_pred HHHHHHhCCCCCceeeEEEEEecCCCCCCCCCCCcccccccc--cccccChhhhhHHHHHhhCCCCeEEEec-c------
Confidence 6666663 334 7778874433321 1222222222 22223332 5788898876444333221 4
Q ss_pred hhhhhHHhhcCCCCCCCCCCCCChHHHHHH-HHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHH
Q 013811 142 KQYVNWARSQGQFLTSDDDFFRNPVVKGYY-KNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWI 220 (436)
Q Consensus 142 ~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~-~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~ 220 (436)
..|.|... |. ..-|.++.....| .+++.-..+. |+ ..|-...++||=... ..|+
T Consensus 136 -~~PgW~~~-g~-----~~~~~~~~~~a~Y~~~wl~ga~~~--------~g--l~idYvg~~NEr~~~--------~~~i 190 (669)
T PF02057_consen 136 -GFPGWVGN-GW-----NWPYDNPQLTAYYVVSWLLGAKKT--------HG--LDIDYVGIWNERGFD--------VNYI 190 (669)
T ss_dssp --B-GGGGT-TS-----S-TTSSHHHHHHHHHHHHHHHHHH--------H-------EE-S-TTS-----------HHHH
T ss_pred -CCCccccC-CC-----CCcccchhhhhHHHHHHHHHHHHH--------hC--CCceEechhhccCCC--------hhHH
Confidence 23667642 11 1124455554444 3444333232 32 245555678998652 4678
Q ss_pred HHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhh-cCCCCcceEEeecCCCCCCCCCChhHhHHHHH
Q 013811 221 TEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVAN-NLIPGIDFATVHSYPDQWLSSSNDRDQLSFLN 299 (436)
Q Consensus 221 ~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~-~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~ 299 (436)
+.+.+.+.+..-++.=.++..+.+.. .+.++..+ .....+|+++.| ||....
T Consensus 191 k~lr~~l~~~gy~~vkiva~D~~~~~-------------~~~~m~~D~~l~~avdvig~H-Y~~~~~------------- 243 (669)
T PF02057_consen 191 KWLRKALNSNGYNKVKIVAADNNWES-------------ISDDMLSDPELRNAVDVIGYH-YPGTYS------------- 243 (669)
T ss_dssp HHHHHHHHHTT-TT-EEEEEEE-STT-------------HHHHHHH-HHHHHH--EEEEE-S-TT---------------
T ss_pred HHHHHHHhhccccceEEEEeCCCccc-------------hhhhhhcCHHHHhcccEeccc-cCCCCc-------------
Confidence 88888888777776555555443321 01122111 123568999999 665311
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccceeeccccc
Q 013811 300 NWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLT 367 (436)
Q Consensus 300 ~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g~~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~ 367 (436)
.+.++. .+|||+-+|=+..-+. ..-..-+...+..-|-. +.....++|.+..
T Consensus 244 ------~~~a~~-~~K~lW~SE~~s~~~~-----~~g~g~~ar~ln~~yv~----g~mT~~I~w~lVa 295 (669)
T PF02057_consen 244 ------SKNAKL-TGKPLWSSEDYSTFNY-----NVGAGCWARILNRNYVN----GRMTAYINWPLVA 295 (669)
T ss_dssp -------HHHHH-HT-EEEEEEEE-S-TT-----HHHHHHHHHHHHHHHHH----H--SEEEEE-SEE
T ss_pred ------HHHHHH-hCCCeEEcCCcccccC-----cCchHHHHHHHHhhhhc----cceEEEEeehhhh
Confidence 012333 6999999996543221 11122233333332221 2567789998865
No 156
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=62.30 E-value=1.5e+02 Score=28.30 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCC--CCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPG--SYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg--~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+.+.+.+.++.+++.|+.+==++. |..|.. ..... .+|++.+.....+++.+++.|+++++.++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~l--D~~~~~-~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVL--DDDYTD-GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEE--Cccccc-CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC
Confidence 346789999999999988554433 222311 11222 46777888899999999999999998653
No 157
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=61.88 E-value=1.2e+02 Score=27.26 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=68.8
Q ss_pred HHHHHHHHc--CCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCC
Q 013811 115 FVIAEARKY--GIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKD 192 (436)
Q Consensus 115 ~~i~~a~~~--Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~ 192 (436)
..+..+++. |++|++.+... .. + .......++..++.|.+.+..++++ |+=
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~-~~--~----------------~~~~~~~~~~~~~~f~~~~~~~v~~--------~~~ 105 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGW-TD--S----------------SPFTLASDPASRAAFANSLVSFLKT--------YGF 105 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCC-CC--C----------------CCchhhcCHHHHHHHHHHHHHHHHH--------cCC
Confidence 445555665 99999998532 11 0 0002246788888888888888887 655
Q ss_pred CCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCCCcccCCCCCccccCCCCCcccchhhhhcCCCC
Q 013811 193 DPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPG 272 (436)
Q Consensus 193 ~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~ 272 (436)
+---+-||-...... ...+.+..+++++.+.+++. +-+|++........ ...+.++ ......
T Consensus 106 DGidiD~E~~~~~~~---~~~~~~~~ll~~lr~~l~~~--~~~ls~a~~~~~~~-----------~~~~~~~--~~l~~~ 167 (210)
T cd00598 106 DGVDIDWEYPGAADN---SDRENFITLLRELRSALGAA--NYLLTIAVPASYFD-----------LGYAYDV--PAIGDY 167 (210)
T ss_pred CceEEeeeCCCCcCc---cHHHHHHHHHHHHHHHhccc--CcEEEEEecCChHH-----------hhccCCH--HHHHhh
Confidence 544444553221110 12457788888888877654 45666543221000 0000122 123468
Q ss_pred cceEEeecCC
Q 013811 273 IDFATVHSYP 282 (436)
Q Consensus 273 iD~~s~H~Y~ 282 (436)
+|++.+..|-
T Consensus 168 vD~v~vm~Yd 177 (210)
T cd00598 168 VDFVNVMTYD 177 (210)
T ss_pred CCEEEEeeec
Confidence 9998888884
No 158
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=61.27 E-value=48 Score=32.38 Aligned_cols=95 Identities=17% Similarity=0.277 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCC
Q 013811 114 DFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDD 193 (436)
Q Consensus 114 D~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~ 193 (436)
..++..|+++|+++++.+.+ |.. ++.+. . ....+..++..++.|.+-+..++++ |+=+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~-~~~-~~~~~--~----------~~~~~l~~~~~r~~fi~~iv~~l~~--------~~~D 105 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITN-LTN-GNFDS--E----------LAHAVLSNPEARQRLINNILALAKK--------YGYD 105 (313)
T ss_pred HHHHHHHHHCCCeEEEEEec-CCC-CCCCH--H----------HHHHHhcCHHHHHHHHHHHHHHHHH--------hCCC
Confidence 47889999999999999865 321 11100 0 0023456888899998888888887 6555
Q ss_pred CcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEe
Q 013811 194 PTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEA 238 (436)
Q Consensus 194 p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~v 238 (436)
--.+-||-. .. .+.+.+..+++++...+++.. .++++
T Consensus 106 GidiDwE~~---~~---~d~~~~~~fl~~lr~~l~~~~--~~lsv 142 (313)
T cd02874 106 GVNIDFENV---PP---EDREAYTQFLRELSDRLHPAG--YTLST 142 (313)
T ss_pred cEEEecccC---CH---HHHHHHHHHHHHHHHHhhhcC--cEEEE
Confidence 444445431 11 135678899999999998643 35544
No 159
>PTZ00333 triosephosphate isomerase; Provisional
Probab=60.39 E-value=89 Score=29.85 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=34.9
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
-..|+++|++.+=+ .|++- +..|.|+ =+.+..-+..|.++||.+|+++-.
T Consensus 82 ~~mL~d~G~~~vii-GHSER--------R~~f~Et-d~~I~~Kv~~al~~gl~pIlCvGE 131 (255)
T PTZ00333 82 AEMLKDLGINWTIL-GHSER--------RQYFGET-NEIVAQKVKNALENGLKVILCIGE 131 (255)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35789999999988 56542 1123332 244566778899999999999743
No 160
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=59.56 E-value=77 Score=35.39 Aligned_cols=152 Identities=19% Similarity=0.225 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHHCCC--CEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh
Q 013811 67 RSKVSTAFHEAASHGL--TVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~--N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y 144 (436)
.+.+.+.++.+++..+ .++++=. + -|.. .-....+|++.|-..+.+++..++.||++++.+.-.-..- .+.|
T Consensus 279 e~~v~~~i~~~~~~~IP~d~~~lD~--~-~~~~-~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d--~~~~ 352 (772)
T COG1501 279 EDEVLEFIDEMRERDIPLDVFVLDI--D-FWMD-NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQD--SPLF 352 (772)
T ss_pred HHHHHHHHhhcccccCcceEEEEee--h-hhhc-cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccC--CchH
Confidence 4667777777776654 4555411 1 0211 1122357788888889999999999999998874221100 0122
Q ss_pred hhHHhhcCCCC----------------CCCCCCCCChHHHHHHHH-HHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 013811 145 VNWARSQGQFL----------------TSDDDFFRNPVVKGYYKN-LIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC 207 (436)
Q Consensus 145 ~~W~~~~G~~~----------------~~~~~f~~~~~~~~~~~~-~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~ 207 (436)
.. +.+.|.-+ ....+ |+||++++.|.+ ..+.++. -.-...|.=+|||..
T Consensus 353 ~e-~~~~Gy~~k~~~g~~~~~~~w~~~~a~~D-Ftnp~~r~Ww~~~~~~~l~d------------~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 353 KE-AIEKGYFVKDPDGEIYQADFWPGNSAFPD-FTNPDAREWWASDKKKNLLD------------LGVDGFWNDMNEPEP 418 (772)
T ss_pred HH-HHHCCeEEECCCCCEeeecccCCcccccC-CCCHHHHHHHHHHHHhHHHh------------cCccEEEccCCCCcc
Confidence 11 11111100 01123 578999999985 3344443 233345788999987
Q ss_pred CCCC------ChHHH-----HHHHHHHHHHhhccCCC-CEEEe
Q 013811 208 TSDP------SGRTI-----QAWITEMASYVKSIDRN-HLLEA 238 (436)
Q Consensus 208 ~~~~------~~~~~-----~~w~~~~~~~Ir~~Dp~-~lV~v 238 (436)
.... +...+ .-+.+...+.+|+..|+ +++.+
T Consensus 419 ~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~l 461 (772)
T COG1501 419 FDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFIL 461 (772)
T ss_pred ccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEE
Confidence 6321 11222 22346667889998764 45543
No 161
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=58.53 E-value=72 Score=27.12 Aligned_cols=55 Identities=16% Similarity=0.346 Sum_probs=38.9
Q ss_pred hhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhc
Q 013811 108 QMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNR 181 (436)
Q Consensus 108 ~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r 181 (436)
..++.|.-+|+.|++.|+.|++.+.- .-..|..-.|. +.+.++.+.+-++.++++
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~P---------vNg~wydytG~----------~~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQP---------VNGKWYDYTGL----------SKEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT------------HHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecC---------CcHHHHHHhCC----------CHHHHHHHHHHHHHHHHH
Confidence 34788899999999999999877631 22356554442 577888899999999988
No 162
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=58.32 E-value=29 Score=33.18 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.+.+++.++.++++|++.|+++..... . . .....-+...+.|..+++.|+++||++.+..+
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~---~-~-~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYL---G-Q-SKEEGLKRVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC---C-C-CHHHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 356788999999999999998653211 0 0 00001134567888999999999999888754
No 163
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=57.90 E-value=36 Score=36.67 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=38.3
Q ss_pred EEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCE
Q 013811 47 YFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIK 126 (436)
Q Consensus 47 ~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~ 126 (436)
..++|.|.. .+. +...+.++..++.+++.|+.++|++-..+ .++.+...++.+++.|+.
T Consensus 80 mL~Rg~N~v--Gy~---~~~d~vv~~~v~~a~~~Gidv~Rifd~ln----------------d~~n~~~~i~~~k~~G~~ 138 (596)
T PRK14042 80 MLLRGQNLL--GYR---NYADDVVRAFVKLAVNNGVDVFRVFDALN----------------DARNLKVAIDAIKSHKKH 138 (596)
T ss_pred EEecccccc--ccc---cCChHHHHHHHHHHHHcCCCEEEEcccCc----------------chHHHHHHHHHHHHcCCE
Confidence 346677752 111 11236788899999999999999964321 033444555666666665
Q ss_pred EEEe
Q 013811 127 LILS 130 (436)
Q Consensus 127 vil~ 130 (436)
+...
T Consensus 139 ~~~~ 142 (596)
T PRK14042 139 AQGA 142 (596)
T ss_pred EEEE
Confidence 5544
No 164
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=57.73 E-value=1.2e+02 Score=28.64 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=44.9
Q ss_pred hhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhcccccc
Q 013811 107 EQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFT 186 (436)
Q Consensus 107 ~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~t 186 (436)
+..++-|...|..|++.||+.| -| .|.+.|=. -.|++.++.|..-++..+.-
T Consensus 92 ~~aleiM~KaI~LA~dLGIRtI-QL-------AGYDVYYE---------------~~d~eT~~rFi~g~~~a~~l----- 143 (287)
T COG3623 92 QQALEIMEKAIQLAQDLGIRTI-QL-------AGYDVYYE---------------EADEETRQRFIEGLKWAVEL----- 143 (287)
T ss_pred HHHHHHHHHHHHHHHHhCceeE-ee-------ccceeeec---------------cCCHHHHHHHHHHHHHHHHH-----
Confidence 4578899999999999999975 33 23333311 02677788887666665542
Q ss_pred ccccCCC-CcEEEEEeecCCCC
Q 013811 187 GIHYKDD-PTIMAWELMNEPRC 207 (436)
Q Consensus 187 g~~yk~~-p~I~~weL~NEp~~ 207 (436)
... -..++.|+|.-|-.
T Consensus 144 ----A~~aqV~lAvEiMDtpfm 161 (287)
T COG3623 144 ----AARAQVMLAVEIMDTPFM 161 (287)
T ss_pred ----HHhhccEEEeeecccHHH
Confidence 222 34678899876654
No 165
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=57.49 E-value=16 Score=39.77 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEcc-ccC------CCCCCC---cc--CCCCCC-hhhhhhHHHHHHHHHHcCCEEEEecc-c
Q 013811 68 SKVSTAFHEAASHGLTVARTWA-FSD------GGYRPL---QR--SPGSYN-EQMFKGLDFVIAEARKYGIKLILSLA-N 133 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~-~~d------~~~~~l---q~--~pg~~~-~~~l~~lD~~i~~a~~~Gi~vil~l~-~ 133 (436)
+..+++|..+|.+|+|+|-+.+ +.. .+|... -| .-|.-+ +.....+..+|++|++.||-|+|++. +
T Consensus 255 ~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~s 334 (757)
T KOG0470|consen 255 GFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHS 334 (757)
T ss_pred hhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhh
Confidence 4566779999999999999943 211 122111 11 111111 12266789999999999999999984 3
Q ss_pred CCCC--CCChhhhhhHHhhc----------CCCC-CCCCC-CCCChHHHHHHHHHHHHHHhc
Q 013811 134 NYDS--FGGKKQYVNWARSQ----------GQFL-TSDDD-FFRNPVVKGYYKNLIKTVLNR 181 (436)
Q Consensus 134 ~w~~--~gg~~~y~~W~~~~----------G~~~-~~~~~-f~~~~~~~~~~~~~v~~iv~r 181 (436)
+-.. ..|... +-+.. |.+. ..... =|.++.+++...+-++..|+.
T Consensus 335 Haa~n~~d~l~~---fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtE 393 (757)
T KOG0470|consen 335 HAAKNSKDGLNM---FDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTE 393 (757)
T ss_pred hcccCcCCcchh---ccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 3221 111111 11100 0000 00011 145788899999999999987
No 166
>PLN02429 triosephosphate isomerase
Probab=56.30 E-value=74 Score=31.39 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=17.8
Q ss_pred hhHHHHHHH----HHHcCCEEEEeccc
Q 013811 111 KGLDFVIAE----ARKYGIKLILSLAN 133 (436)
Q Consensus 111 ~~lD~~i~~----a~~~Gi~vil~l~~ 133 (436)
..-|.+|.. |.++||.+|+++-.
T Consensus 163 ~Etd~~V~~Kv~~al~~GL~pIvCIGE 189 (315)
T PLN02429 163 GEKDEFIGKKAAYALSEGLGVIACIGE 189 (315)
T ss_pred CcCHHHHHHHHHHHHHCcCEEEEEcCC
Confidence 334667777 99999999999743
No 167
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=55.77 E-value=38 Score=30.99 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLI 128 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vi 128 (436)
-.++..++.++++|.+.+-++.. .| .+.++.|..+..+|.++|+++-
T Consensus 135 V~vetAiaml~dmG~~SiKffPm-~G-------------l~~leE~~avAkA~a~~g~~lE 181 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKFFPM-GG-------------LKHLEELKAVAKACARNGFTLE 181 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE----TT-------------TTTHHHHHHHHHHHHHCT-EEE
T ss_pred ccHHHHHHHHHHcCCCeeeEeec-CC-------------cccHHHHHHHHHHHHHcCceeC
Confidence 45889999999999999998653 11 2447778889999999999983
No 168
>PRK12677 xylose isomerase; Provisional
Probab=55.52 E-value=21 Score=36.23 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcC--CEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYG--IKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~G--i~vil~l~ 132 (436)
+.+.+.++.++++|+++|.+|.-.++..-..+......-+...+.|+.+.+.|+++| |++.|...
T Consensus 114 ~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpk 180 (384)
T PRK12677 114 RKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPK 180 (384)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccC
Confidence 447888999999999999998653331101111100011233466678888898854 98888754
No 169
>PRK14567 triosephosphate isomerase; Provisional
Probab=55.24 E-value=1.2e+02 Score=28.89 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=33.2
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
-..|+++|++.+=+ .|++- +..|.|. -+.+..-+..|.++||.+|+++-
T Consensus 78 ~~mLkd~G~~yvii-GHSER--------R~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-GHSER--------RSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 34789999999988 55542 1123332 12344566788999999999974
No 170
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=55.22 E-value=21 Score=38.17 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCC-----CCCCCccCCCCCCh--hhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDG-----GYRPLQRSPGSYNE--QMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~-----~~~~lq~~pg~~~~--~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.-+.+-+++++++|++++=+-.+..- +|- .......++ ..++.+..+++++++.||++|+++.
T Consensus 40 ~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~--~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 40 KGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYD--ASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred ccchhhhhHHHhcCCceEEeCCCcCCCHHHhccC--ccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 34677899999999999877433210 110 001111222 1366788999999999999999985
No 171
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=54.68 E-value=1.5e+02 Score=29.57 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHH-cCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccc
Q 013811 111 KGLDFVIAEARK-YGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIH 189 (436)
Q Consensus 111 ~~lD~~i~~a~~-~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~ 189 (436)
+.+..+....++ -+++|++.+.. |... . ..+ .....++..++.|.+-+-.++++
T Consensus 56 ~~~~~~~~lk~~~p~lkvlisiGG-~~~~-~-~~f--------------~~~~~~~~~r~~fi~~iv~~l~~-------- 110 (362)
T cd02872 56 GLYERFNALKEKNPNLKTLLAIGG-WNFG-S-AKF--------------SAMAASPENRKTFIKSAIAFLRK-------- 110 (362)
T ss_pred hHHHHHHHHHhhCCCceEEEEEcC-CCCC-c-chh--------------HHHhCCHHHHHHHHHHHHHHHHH--------
Confidence 344455444333 48999998742 3210 0 011 12345788888888888888887
Q ss_pred cCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEeCC
Q 013811 190 YKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEAGL 240 (436)
Q Consensus 190 yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~ 240 (436)
|+=+--.+-||--+-.. ....+.+.+..+++++.+.+++..++.+|++..
T Consensus 111 ~~~DGidiDwE~p~~~~-~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~av 160 (362)
T cd02872 111 YGFDGLDLDWEYPGQRG-GPPEDKENFVTLLKELREAFEPEAPRLLLTAAV 160 (362)
T ss_pred cCCCCeeeeeeccccCC-CCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEEe
Confidence 65555556677433211 111124578889999999998876677777643
No 172
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=54.15 E-value=2.2e+02 Score=27.75 Aligned_cols=165 Identities=14% Similarity=0.144 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCC-c--cCCCCCChhhhhhHHHHH-HHHHHcCCEEEEeccc-CCCCCCCh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPL-Q--RSPGSYNEQMFKGLDFVI-AEARKYGIKLILSLAN-NYDSFGGK 141 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~l-q--~~pg~~~~~~l~~lD~~i-~~a~~~Gi~vil~l~~-~w~~~gg~ 141 (436)
...+...|+.++++|+|+|=+=+|+|...... . .-|...=+-.-+.+-++. ....+.|++|.--+.. .|+ ..+.
T Consensus 16 ~~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf~-lp~~ 94 (294)
T PF14883_consen 16 ERNLDKLIQRIKDMGINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAFD-LPKV 94 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhcc-CCCc
Confidence 35688999999999999998866765321100 0 011111111122333444 4455889987543321 111 1111
Q ss_pred hhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe---ecCCCCCCCCChHHHHH
Q 013811 142 KQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWEL---MNEPRCTSDPSGRTIQA 218 (436)
Q Consensus 142 ~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL---~NEp~~~~~~~~~~~~~ 218 (436)
.....+......+.....--..+|++++..++.-+.++.. ..+.|+.|-|+..+--+|+ .++|.. ......+..
T Consensus 95 ~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y-~~fdGILFhDDa~L~D~E~~~~~~~~~~--~~Kt~~Li~ 171 (294)
T PF14883_consen 95 KRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARY-SKFDGILFHDDAVLSDFEIAAIRQNPAD--RQKTRALID 171 (294)
T ss_pred chhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhh-CCCCeEEEcCCccccchhhhhhccChhh--HHHHHHHHH
Confidence 1111110000000000011123688888888888888865 6889999988865554551 122211 011346788
Q ss_pred HHHHHHHHhhccCCCCE
Q 013811 219 WITEMASYVKSIDRNHL 235 (436)
Q Consensus 219 w~~~~~~~Ir~~Dp~~l 235 (436)
+..++++.+|...|...
T Consensus 172 ft~eL~~~v~~~rp~lk 188 (294)
T PF14883_consen 172 FTMELAAAVRRYRPDLK 188 (294)
T ss_pred HHHHHHHHHHHhCccch
Confidence 88999999999877543
No 173
>PLN03059 beta-galactosidase; Provisional
Probab=53.76 E-value=46 Score=37.19 Aligned_cols=121 Identities=16% Similarity=0.269 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHhh-cccccccccCCCCCEEeeCCeEEE-CCeEEEEE----------------eecc-----ccccccc
Q 013811 5 HLAFAIFLAFFIHR-QSFNVLHVEAGDGFIRTRGSHFLL-NGNLYFAN----------------GFNA-----YWLMYVA 61 (436)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~fv~v~g~~f~~-nGkp~~~~----------------G~N~-----~~~~~~~ 61 (436)
-+.|+|||+||.-. .+.....+.-...-+.++|..|.+ -|.--|++ |+|. +|-.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp 87 (840)
T PLN03059 8 VFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP 87 (840)
T ss_pred hhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCC
Confidence 35677888877633 333322343222346889988774 88776655 5442 2322221
Q ss_pred C----CcchhhhHHHHHHHHHHCCCC-EEEEcccc--C---CCCCC-CccCCC----CCChhhhhhH----HHHHHHHHH
Q 013811 62 S----DPSQRSKVSTAFHEAASHGLT-VARTWAFS--D---GGYRP-LQRSPG----SYNEQMFKGL----DFVIAEARK 122 (436)
Q Consensus 62 ~----~~~~~~~~~~~l~~l~~~G~N-~vRi~~~~--d---~~~~~-lq~~pg----~~~~~~l~~l----D~~i~~a~~ 122 (436)
. +-....++.+-|+.+++.|+- .+|.-.+. + |+.|. |...|+ .-|+..++.+ +.++...++
T Consensus 88 ~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~ 167 (840)
T PLN03059 88 SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKS 167 (840)
T ss_pred CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 1 112457899999999999976 46773332 1 22222 222233 2456666544 555666654
Q ss_pred cCC
Q 013811 123 YGI 125 (436)
Q Consensus 123 ~Gi 125 (436)
.++
T Consensus 168 ~~l 170 (840)
T PLN03059 168 EKL 170 (840)
T ss_pred cce
Confidence 444
No 174
>PLN02692 alpha-galactosidase
Probab=52.50 E-value=70 Score=32.81 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=47.3
Q ss_pred CC-eEEEEEeecccccccccCCcchhhhHHHHHHHH-----HHCCCCEEEEccccCCCCC--------CCccCCCCCChh
Q 013811 43 NG-NLYFANGFNAYWLMYVASDPSQRSKVSTAFHEA-----ASHGLTVARTWAFSDGGYR--------PLQRSPGSYNEQ 108 (436)
Q Consensus 43 nG-kp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l-----~~~G~N~vRi~~~~d~~~~--------~lq~~pg~~~~~ 108 (436)
|| -+....|.|.|...... -+.+.+.+..+.| +++|.+.|=+ |.+|. .+++.|-+|.
T Consensus 50 ngla~tPpmGWnSW~~~~~~---i~E~~i~~~ad~~~~~gl~~~Gy~yv~i----DDgW~~~~rd~~G~~~~d~~kFP-- 120 (412)
T PLN02692 50 NGLGITPPMGWNSWNHFSCK---IDEKMIKETADALVSTGLSKLGYTYVNI----DDCWAEIARDEKGNLVPKKSTFP-- 120 (412)
T ss_pred CcCcCCCcceEEchhhhCcc---cCHHHHHHHHHHHHhccchhcCcEEEEE----cCCcCCCCCCCCCCeeeChhhcC--
Confidence 55 23447899985433222 1335566666655 5667777665 33342 2333333332
Q ss_pred hhhhHHHHHHHHHHcCCEEEEecc
Q 013811 109 MFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 109 ~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
..|..+.+.+++.||+.=|...
T Consensus 121 --~G~k~ladyiH~~GLKfGIy~d 142 (412)
T PLN02692 121 --SGIKALADYVHSKGLKLGIYSD 142 (412)
T ss_pred --CcHHHHHHHHHHCCCceEEEec
Confidence 4689999999999999977653
No 175
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=52.46 E-value=32 Score=33.20 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=36.2
Q ss_pred HHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 70 VSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
+++.|+.++++|+.-|-+ -|-+. -++...+.++++++.|.+++| +|++|..
T Consensus 108 ~~~~f~~~~~~Gv~GvKi-dF~~~-----------d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~ 158 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKI-DFMDR-----------DDQEMVNWYEDILEDAAEYKL--MVNFHGA 158 (273)
T ss_dssp HHHHHHHHHHCTEEEEEE-E--SS-----------TSHHHHHHHHHHHHHHHHTT---EEEETTS
T ss_pred HHHHHHHHHHcCCCEEee-CcCCC-----------CCHHHHHHHHHHHHHHHHcCc--EEEecCC
Confidence 577777777777777777 33221 357788999999999999977 5677754
No 176
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.84 E-value=2.1e+02 Score=27.13 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCC----hhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhh
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYN----EQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQ 143 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~----~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 143 (436)
+.++..-+.+++.|+.+.=+....... + .++..+ ++.++.++..++.|++.|...|.. +. +.
T Consensus 57 ~~~~~l~~~l~~~gl~i~~~~~~~~~~---~--~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~------~~-- 122 (283)
T PRK13209 57 EQRLALVNALVETGFRVNSMCLSAHRR---F--PLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AG------YD-- 122 (283)
T ss_pred HHHHHHHHHHHHcCCceeEEecccccc---c--CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CC------cc--
Confidence 456677777889999876652211100 1 122223 346788999999999999997753 21 10
Q ss_pred hhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeec
Q 013811 144 YVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMN 203 (436)
Q Consensus 144 y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~N 203 (436)
.|. + ..+++..+.+.+.++.+++. -+.+-..+++|..+
T Consensus 123 --~~~---~---------~~~~~~~~~~~~~l~~l~~~--------A~~~GV~i~iE~~~ 160 (283)
T PRK13209 123 --VYY---E---------QANNETRRRFIDGLKESVEL--------ASRASVTLAFEIMD 160 (283)
T ss_pred --ccc---c---------ccHHHHHHHHHHHHHHHHHH--------HHHhCCEEEEeecC
Confidence 000 0 12355566777788888776 44555567777653
No 177
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.70 E-value=98 Score=30.43 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=71.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc---C--CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCCh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR---S--PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGK 141 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~---~--pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~ 141 (436)
.+.+.+.++.+++.|+.+==++. |..|-.... . .-.+|++.+.....+++..+++|+++++.++..... ..
T Consensus 23 ~~~v~~~~~~~~~~~iP~d~i~l--D~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~--~~ 98 (317)
T cd06598 23 WQEVDDTIKTLREKDFPLDAAIL--DLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLK--NS 98 (317)
T ss_pred HHHHHHHHHHHHHhCCCceEEEE--echhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccC--Cc
Confidence 36788999999999987544432 212311000 1 123677778888999999999999999988643211 11
Q ss_pred hhhhhHHhhcCC---------CC--------CCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecC
Q 013811 142 KQYVNWARSQGQ---------FL--------TSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNE 204 (436)
Q Consensus 142 ~~y~~W~~~~G~---------~~--------~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NE 204 (436)
+.|.+=. +.|. +. ....+ |+||++++.|.+.++.+.+- ..-..|.=+||
T Consensus 99 ~~y~e~~-~~g~l~~~~~~~~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~~------------Gvdg~w~D~~E 164 (317)
T cd06598 99 KNWGEAV-KAGALLKKDQGGVPTLFDFWFGNTGLID-WFDPAAQAWFHDNYKKLIDQ------------GVTGWWGDLGE 164 (317)
T ss_pred hhHHHHH-hCCCEEEECCCCCEeeeeccCCCccccC-CCCHHHHHHHHHHHHHhhhC------------CccEEEecCCC
Confidence 2232111 1111 00 01124 47899999998888876321 11224677999
Q ss_pred CC
Q 013811 205 PR 206 (436)
Q Consensus 205 p~ 206 (436)
|.
T Consensus 165 p~ 166 (317)
T cd06598 165 PE 166 (317)
T ss_pred cc
Confidence 85
No 178
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=50.98 E-value=19 Score=39.28 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEcccc---CCCCCCCccCCC-----CCChhhhhhHHHHHHHHHHcCCEEEEecccCC
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFS---DGGYRPLQRSPG-----SYNEQMFKGLDFVIAEARKYGIKLILSLANNY 135 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~---d~~~~~lq~~pg-----~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w 135 (436)
+.+..++.|+.|++.|.++|-+--+. .++ .+-|+ .||......+..++...+++|+...+-+...|
T Consensus 70 spe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~----~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpATfFlvg~w 143 (671)
T PRK14582 70 RTSALREQFAWLRENGYQPVSVAQILEAHRGG----KPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVWAPVGSW 143 (671)
T ss_pred CHHHHHHHHHHHHHCcCEEccHHHHHHHHhcC----CCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEEEEechh
Confidence 35789999999999999999872211 111 01122 25655555667888899999999987765544
No 179
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=50.86 E-value=1.5e+02 Score=28.98 Aligned_cols=99 Identities=18% Similarity=0.376 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHc-CCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhcccccccccc
Q 013811 112 GLDFVIAEARKY-GIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHY 190 (436)
Q Consensus 112 ~lD~~i~~a~~~-Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~y 190 (436)
.+..+....+++ ++++++.+.. |... ..+ .....+++.++.|.+-+..++++ |
T Consensus 53 ~~~~~~~l~~~~~~~kvl~svgg-~~~s---~~f--------------~~~~~~~~~r~~fi~~i~~~~~~--------~ 106 (334)
T smart00636 53 NFGQLKALKKKNPGLKVLLSIGG-WTES---DNF--------------SSMLSDPASRKKFIDSIVSFLKK--------Y 106 (334)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeC-CCCC---cch--------------hHHHCCHHHHHHHHHHHHHHHHH--------c
Confidence 455566666664 9999998743 2110 011 12345788889898888888887 5
Q ss_pred CCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhcc---CCCCEEEeCC
Q 013811 191 KDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSI---DRNHLLEAGL 240 (436)
Q Consensus 191 k~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~---Dp~~lV~vG~ 240 (436)
.=+--.+-||- |.... .+.+.+..+++++.+.+++. .++.+|++..
T Consensus 107 ~~DGidiDwE~---~~~~~-~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v 155 (334)
T smart00636 107 GFDGIDIDWEY---PGARG-DDRENYTALLKELREALDKEGAEGKGYLLTIAV 155 (334)
T ss_pred CCCeEEECCcC---CCCCc-cHHHHHHHHHHHHHHHHHHhcccCCceEEEEEe
Confidence 44433333442 22210 13457888999998888765 5667777654
No 180
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=50.72 E-value=57 Score=34.04 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+.++..++.+++.|+.++|++-.. | ..+.+...++.+++.|+.+.+.+.
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~l--------------n--d~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDAL--------------N--DPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccC--------------C--CHHHHHHHHHHHHHcCCEEEEEEE
Confidence 467777889999999999985431 1 156778899999999999876653
No 181
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.39 E-value=48 Score=31.95 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
+..+.+++...+.|+..||++... + .++.+...++.|+++|+.+.+.+
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~--------------~--~~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDAL--------------N--DVRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecC--------------C--hHHHHHHHHHHHHHCCCeEEEEE
Confidence 457889999999999999995421 1 16778889999999999988765
No 182
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=49.99 E-value=36 Score=32.30 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
..+++.|+.++++|+++|=+ ++|.- . .+ .+..-++|..+++.|++|+..+.
T Consensus 84 ~~~~~yl~~~k~lGf~~IEi---SdGti---~-----l~---~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEI---SDGTI---D-----LP---EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE-----SSS--------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred ChHHHHHHHHHHcCCCEEEe---cCCce---e-----CC---HHHHHHHHHHHHHCCCEEeeccc
Confidence 57899999999999999998 44411 0 12 23345789999999999988764
No 183
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=49.51 E-value=84 Score=29.36 Aligned_cols=77 Identities=21% Similarity=0.175 Sum_probs=50.1
Q ss_pred CCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHH
Q 013811 43 NGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARK 122 (436)
Q Consensus 43 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~ 122 (436)
+|+.+-+.|.-....-+ +....+...++.+++.|++-|.+++|.||..- -...++..|..+.+.+.+
T Consensus 26 ~~~~lHl~GLlSdGGVH-----Sh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt--------~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 26 NGGRLHLMGLLSDGGVH-----SHIDHLFALIKLAKKQGVKKVYVHAFTDGRDT--------PPKSALKYLEELEEKLAE 92 (223)
T ss_dssp TT--EEEEEEESS-SSS-------HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS---------TTTHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEecCCCcc-----ccHHHHHHHHHHHHHcCCCEEEEEEecCCCCC--------CcchHHHHHHHHHHHHHh
Confidence 34556666654311111 12356888999999999999999999988431 124568889999999999
Q ss_pred cCCEEEEecc
Q 013811 123 YGIKLILSLA 132 (436)
Q Consensus 123 ~Gi~vil~l~ 132 (436)
.|+--|-++.
T Consensus 93 ~~~g~IAsv~ 102 (223)
T PF06415_consen 93 IGIGRIASVS 102 (223)
T ss_dssp HTCTEEEEEE
T ss_pred hCCceEEEEe
Confidence 8886666664
No 184
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=49.42 E-value=12 Score=30.37 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=12.9
Q ss_pred CcchhHHHHHHHHH--HHhhcccccccccCCCCC--------EEeeCCeEEECCeEEEE
Q 013811 1 MRRLHLAFAIFLAF--FIHRQSFNVLHVEAGDGF--------IRTRGSHFLLNGNLYFA 49 (436)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f--------v~v~g~~f~~nGkp~~~ 49 (436)
||.|+++-..|++| -+...|+++ ....| |.+.++.+.+||+.|.+
T Consensus 1 Mk~L~~La~~L~alaLa~p~~~~a~----~~~TFE~~GvV~~v~~e~~lv~IDgq~YrL 55 (118)
T PF14481_consen 1 MKSLRLLATALFALALACPGLAWAA----EPHTFEGAGVVQEVQPEKNLVDIDGQHYRL 55 (118)
T ss_dssp ------------------------------TTEEEEEEEEEEEEGGGTEEEETTEEEE-
T ss_pred CcchHHhhhhhhhhhhccccceecc----CcceecccceEEEeecccceEEEcCcEEeC
Confidence 77887765544333 333344443 11223 55567778889987754
No 185
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=49.37 E-value=88 Score=29.91 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=55.2
Q ss_pred EEeeCCeEEE-CCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhh
Q 013811 33 IRTRGSHFLL-NGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFK 111 (436)
Q Consensus 33 v~v~g~~f~~-nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~ 111 (436)
|.+.+ +.+ +|+++++.|-+. ..+.+.+.+.-+.+++.|.++.|-..+- | ..+|..|..-..+
T Consensus 14 i~~~~--~~~g~~~~~~IAGpc~---------ie~~~~~~~~A~~lk~~~~k~~r~~~~K----p--Rtsp~s~~g~g~~ 76 (260)
T TIGR01361 14 VDVGG--VKIGEGSPIVIAGPCS---------VESEEQIMETARFVKEAGAKILRGGAFK----P--RTSPYSFQGLGEE 76 (260)
T ss_pred EEECC--EEEcCCcEEEEEeCCc---------cCCHHHHHHHHHHHHHHHHHhccCceec----C--CCCCccccccHHH
Confidence 55533 334 567878888543 1234567777788888899888864431 1 1133334433456
Q ss_pred hHHHHHHHHHHcCCEEEEecccC
Q 013811 112 GLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 112 ~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
.|+.+-+.|++.||.++-+.++.
T Consensus 77 gl~~l~~~~~~~Gl~~~t~~~d~ 99 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVTEVMDP 99 (260)
T ss_pred HHHHHHHHHHHhCCCEEEeeCCh
Confidence 67777888999999999998764
No 186
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=49.28 E-value=1.1e+02 Score=35.06 Aligned_cols=125 Identities=19% Similarity=0.319 Sum_probs=72.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVN 146 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~ 146 (436)
.+.+.+.++.+++.|+.+==+|. |.+|-. .-....+|++.|.....+++..++.|+++++.+.-.-..-.|...|..
T Consensus 200 q~eV~eva~~fre~~IP~DvIwl--DidYm~-g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~e 276 (978)
T PLN02763 200 AKRVAEIARTFREKKIPCDVVWM--DIDYMD-GFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDS 276 (978)
T ss_pred HHHHHHHHHHHHHcCCCceEEEE--ehhhhc-CCCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHh
Confidence 46788999999999987655554 212210 001234677778888899999999999998776432111011112211
Q ss_pred ------HHhh-cCCCC-----C---CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 013811 147 ------WARS-QGQFL-----T---SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC 207 (436)
Q Consensus 147 ------W~~~-~G~~~-----~---~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~ 207 (436)
|.+. .|.+. + ...+ |+||+++++|.+.++.+++. .+. ..|.=+|||..
T Consensus 277 g~~~~~fvk~~~G~~y~G~vWpG~~~fpD-FTnP~ar~WW~~~~k~l~d~--GVD----------G~W~DmnEPa~ 339 (978)
T PLN02763 277 GCENDVWIQTADGKPFVGEVWPGPCVFPD-FTNKKTRSWWANLVKDFVSN--GVD----------GIWNDMNEPAV 339 (978)
T ss_pred HhhcCeeEECCCCCeeEeeecCCCccccC-CCCHHHHHHHHHHHHHHhcC--CCc----------EEEccCCCCcc
Confidence 0000 11110 0 1123 57899999998888877642 111 24677899864
No 187
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=48.74 E-value=51 Score=33.89 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccC-----CCCC---CCccCCCCCC---hhhhhhHHHHHHHH-HHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSD-----GGYR---PLQRSPGSYN---EQMFKGLDFVIAEA-RKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d-----~~~~---~lq~~pg~~~---~~~l~~lD~~i~~a-~~~Gi~vil~l~ 132 (436)
..+++.|+.+++.|.|+|-+-.+.. ..|. .++-.|.-+. +..++.+..+|.++ +++||..|.+++
T Consensus 22 ~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 22 SDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred hHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 5799999999999999999854322 1121 1222222121 23467788888888 589999999985
No 188
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=48.23 E-value=2e+02 Score=28.93 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=56.4
Q ss_pred CCEEeeC--CeEEE-CCeE-EEEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCC
Q 013811 31 GFIRTRG--SHFLL-NGNL-YFANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYN 106 (436)
Q Consensus 31 ~fv~v~g--~~f~~-nGkp-~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~ 106 (436)
..|.+.. +.+.+ ++++ +.+.|-+. -.+++.+.+.-+.+++.|++.+|--.|- | ..+|..|.
T Consensus 83 ~~v~v~~~~~~v~iGg~~~l~vIAGPCs---------IEs~eq~l~~A~~lk~~g~~~~r~g~~k----p--Rtsp~sf~ 147 (352)
T PRK13396 83 SEVVVPTPNGPVPFGENHPVVVVAGPCS---------VENEEMIVETAKRVKAAGAKFLRGGAYK----P--RTSPYAFQ 147 (352)
T ss_pred ceEEEecCcCCeEecCCCeEEEEEeCCc---------ccCHHHHHHHHHHHHHcCCCEEEeeeec----C--CCCCcccC
Confidence 3455542 23444 4554 56777432 1245677788888999999999964442 1 12444444
Q ss_pred hhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 107 EQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 107 ~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
.-.-+.|+.+-+.+++.||.++-++++.
T Consensus 148 G~g~~gl~~L~~~~~e~Gl~~~tev~d~ 175 (352)
T PRK13396 148 GHGESALELLAAAREATGLGIITEVMDA 175 (352)
T ss_pred CchHHHHHHHHHHHHHcCCcEEEeeCCH
Confidence 3335566777788999999999988754
No 189
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=48.20 E-value=2.5e+02 Score=26.61 Aligned_cols=148 Identities=13% Similarity=0.199 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhH
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNW 147 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W 147 (436)
+.+++.+..+.++|+.+|-+-.+ |.- .++..-.-.....+.|...++.|+++.+.+-+.+.+.. .++.+..+..|
T Consensus 96 eiM~KaI~LA~dLGIRtIQLAGY-DVY---YE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDtp-fm~sIsk~~~~ 170 (287)
T COG3623 96 EIMEKAIQLAQDLGIRTIQLAGY-DVY---YEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMDTP-FMNSISKWLKY 170 (287)
T ss_pred HHHHHHHHHHHHhCceeEeeccc-eee---eccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeecccH-HHHHHHHHHHH
Confidence 56788889999999999998332 331 22211111234677889999999999998887765431 12333334444
Q ss_pred HhhcCCCCCCCCCCCC-ChH--HHHHH-HHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC-------CC-CChHH
Q 013811 148 ARSQGQFLTSDDDFFR-NPV--VKGYY-KNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCT-------SD-PSGRT 215 (436)
Q Consensus 148 ~~~~G~~~~~~~~f~~-~~~--~~~~~-~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~-------~~-~~~~~ 215 (436)
...-+. .||+ =|+ -..+| .+...++ +.+.+.|.+..|---.... .+ +-++.
T Consensus 171 ~~~I~s------P~f~vYPDiGNlsaw~ndv~~El-----------~lG~~~I~aiHlKDTy~vte~~~GqFrdvpfGeG 233 (287)
T COG3623 171 DKYINS------PWFTVYPDIGNLSAWNNDVQSEL-----------QLGIDKIVAIHLKDTYAVTETSPGQFRDVPFGEG 233 (287)
T ss_pred HHHhCC------CcEEecCCcccHhhhhhhHHHHH-----------HcCcCceEEEEecccccccccCCCccccCCcCCc
Confidence 332221 1221 121 12223 2333333 4455667776665441111 00 11222
Q ss_pred HHHHHHHHHHHhhccCCCCEEEe
Q 013811 216 IQAWITEMASYVKSIDRNHLLEA 238 (436)
Q Consensus 216 ~~~w~~~~~~~Ir~~Dp~~lV~v 238 (436)
-..| .++.+.||+++++-+..+
T Consensus 234 ~Vdf-~~~f~~lk~~ny~gpfLI 255 (287)
T COG3623 234 CVDF-EECFKTLKQLNYRGPFLI 255 (287)
T ss_pred chhH-HHHHHHHHHhCCCCceeh
Confidence 2333 667888999988766654
No 190
>PF06316 Ail_Lom: Enterobacterial Ail/Lom protein; InterPro: IPR000758 Virulence-related outer membrane proteins are expressed in Gram-negative bacteria and are essential to bacterial survival within macrophages and for eukaryotic cell invasion. Members of this group include: PagC, required by Salmonella typhimurium for survival in macrophages and for virulence in mice [] Rck outer membrane protein of the S. typhimurium virulence plasmid [] Ail, a product of the Yersinia enterocolitica chromosome capable of mediating bacterial adherence to and invasion of epithelial cell lines [] OmpX from Escherichia coli that promotes adhesion to and entry into mammalian cells. It also has a role in the resistance against attack by the human complement system [] a Bacteriophage lambda outer membrane protein, Lom [] The crystal structure of OmpX from E. coli reveals that OmpX consists of an eight-stranded antiparallel all-next-neighbour beta barrel []. The structure shows two girdles of aromatic amino acid residues and a ribbon of nonpolar residues that attach to the membrane interior. The core of the barrel consists of an extended hydrogen-bonding network of highly conserved residues. OmpX thus resembles an inverse micelle. The OmpX structure shows that the membrane-spanning part of the protein is much better conserved than the extracellular loops. Moreover, these loops form a protruding beta sheet, the edge of which presumably binds to external proteins. It is suggested that this type of binding promotes cell adhesion and invasion and helps defend against the complement system. Although OmpX has the same beta-sheet topology as the structurally related outer membrane protein A (OmpA) IPR000498 from INTERPRO, their barrels differ with respect to the shear numbers and internal hydrogen-bonding networks.; GO: 0009279 cell outer membrane
Probab=48.15 E-value=14 Score=33.60 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=18.1
Q ss_pred CcchhHHHHHHHHHHHhhccccc
Q 013811 1 MRRLHLAFAIFLAFFIHRQSFNV 23 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (436)
||+||.+.+++++++.....+++
T Consensus 1 mr~~~~~ils~~~~l~~~~~pA~ 23 (199)
T PF06316_consen 1 MRKLCAAILSAAVLLAVSGLPAS 23 (199)
T ss_pred ChhHHHHHHHHHHHHHHhcchhh
Confidence 99999999888777777665555
No 191
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=48.14 E-value=2.4e+02 Score=26.55 Aligned_cols=129 Identities=9% Similarity=0.066 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHCCCCEEEEccccCCCCC-C-CccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhh
Q 013811 69 KVSTAFHEAASHGLTVARTWAFSDGGYR-P-LQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVN 146 (436)
Q Consensus 69 ~~~~~l~~l~~~G~N~vRi~~~~d~~~~-~-lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~ 146 (436)
.+++.-+.+++.|+.++=+...... ++ . +.+.+ ..-++.++.++..++.|++.|...|+..... .+ +.
T Consensus 48 ~~~~l~~~~~~~gl~v~s~~~~~~~-~~~~~~~~~~-~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~----~~---~~- 117 (275)
T PRK09856 48 GIKQIKALAQTYQMPIIGYTPETNG-YPYNMMLGDE-HMRRESLDMIKLAMDMAKEMNAGYTLISAAH----AG---YL- 117 (275)
T ss_pred HHHHHHHHHHHcCCeEEEecCcccC-cCccccCCCH-HHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC----CC---CC-
Confidence 4555566777899986654322111 11 0 01110 1123568899999999999999987552110 00 00
Q ss_pred HHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHH
Q 013811 147 WARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASY 226 (436)
Q Consensus 147 W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~ 226 (436)
-+..+..+.+.+.++.++.. -+...-.++.|..+......-.+ ..++.+.
T Consensus 118 ---------------~~~~~~~~~~~~~l~~l~~~--------a~~~gv~l~iE~~~~~~~~~~~t-------~~~~~~l 167 (275)
T PRK09856 118 ---------------TPPNVIWGRLAENLSELCEY--------AENIGMDLILEPLTPYESNVVCN-------ANDVLHA 167 (275)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHH--------HHHcCCEEEEecCCCCcccccCC-------HHHHHHH
Confidence 12344556667777777775 44444556677543222111001 3566777
Q ss_pred hhccC-CCCEEE
Q 013811 227 VKSID-RNHLLE 237 (436)
Q Consensus 227 Ir~~D-p~~lV~ 237 (436)
++.++ |+.-+.
T Consensus 168 ~~~~~~~~v~~~ 179 (275)
T PRK09856 168 LALVPSPRLFSM 179 (275)
T ss_pred HHHcCCCcceeE
Confidence 77776 444333
No 192
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=47.42 E-value=62 Score=23.44 Aligned_cols=47 Identities=28% Similarity=0.282 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
...++.++.+++.|++.+=+ +|-. .+.....+.+.+++.||++++-+
T Consensus 15 ~~~~~~~~~a~~~g~~~v~i---TDh~--------------~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAI---TDHG--------------NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEE---eeCC--------------cccCHHHHHHHHHHcCCeEEEEE
Confidence 35778899999999998876 3310 13334567788889999998654
No 193
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=47.25 E-value=2.5e+02 Score=26.50 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=36.1
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
.+.|+++|++.+=+ .|++- +..|+|+ -+.+..-+..|.++||.+|+++-.
T Consensus 77 ~~mL~d~G~~~vii-GHSER--------R~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiGE 126 (242)
T cd00311 77 AEMLKDAGAKYVII-GHSER--------RQYFGET-DEDVAKKVKAALEAGLTPILCVGE 126 (242)
T ss_pred HHHHHHcCCCEEEe-Ccccc--------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45789999999988 56552 1123333 455677788999999999999743
No 194
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=46.93 E-value=54 Score=30.94 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
..+++.++.++++|+++|=+ ++|.- ..+ .+..-++|+.++++|++|...+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---S~G~~--------~i~---~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---SDGSM--------EIS---LEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---cCCcc--------CCC---HHHHHHHHHHHHhCCCeEeccc
Confidence 57889999999999999998 44311 122 2334578999999999998765
No 195
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.67 E-value=2.4e+02 Score=27.65 Aligned_cols=124 Identities=17% Similarity=0.218 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCC-c--cCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPL-Q--RSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQ 143 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~l-q--~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 143 (436)
.+.+.+.++.+++.|+.+==+|. |.+|... . ...-.+|++.+-....++++.++.|+++++.++..... ..+.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~l--d~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~--~~~~ 103 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHL--SSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQ--DHPR 103 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEE--eccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccC--CCHH
Confidence 46788999999999987655543 2223111 0 01124677788889999999999999999987644211 1123
Q ss_pred hhhHHhhcCC-------C--C-----C--CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCC
Q 013811 144 YVNWARSQGQ-------F--L-----T--SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPR 206 (436)
Q Consensus 144 y~~W~~~~G~-------~--~-----~--~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~ 206 (436)
|.+-.. .|. . . . ..--=|+||++++.|.+.+++.+.. . ..-..|.=+|||.
T Consensus 104 y~e~~~-~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~--------~---Gvdg~w~D~~E~~ 170 (317)
T cd06599 104 YKELKE-AGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLD--------L---GIDSTWNDNNEYE 170 (317)
T ss_pred HHHHHH-CCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhc--------C---CCcEEEecCCCCc
Confidence 332111 110 0 0 0 0011247899999998888655433 1 1122356689985
No 196
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=46.29 E-value=2.9e+02 Score=26.96 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhcccccccccc
Q 013811 111 KGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHY 190 (436)
Q Consensus 111 ~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~y 190 (436)
..+..-|..+++.|++|+|++- |.. + .....++..++.|.+.+..+++. |
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiG-------G~~---------~------~~~~~~~~~~~~fa~sl~~~~~~--------~ 109 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIG-------GAN---------G------HVDLNHTAQEDNFVDSIVAIIKE--------Y 109 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEe-------CCC---------C------ccccCCHHHHHHHHHHHHHHHHH--------h
Confidence 4566778899999999999873 210 1 00134667788888888888876 5
Q ss_pred CCCCcEEEEEeecCCCCCCCC---ChHHHHHHHHHHHHHhhccCCCCEEEeCCC
Q 013811 191 KDDPTIMAWELMNEPRCTSDP---SGRTIQAWITEMASYVKSIDRNHLLEAGLE 241 (436)
Q Consensus 191 k~~p~I~~weL~NEp~~~~~~---~~~~~~~w~~~~~~~Ir~~Dp~~lV~vG~~ 241 (436)
.=| +.+|-=|....... ..+.+...++++.+. ++++-+||+..+
T Consensus 110 g~D----GiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~---~~~~~~lT~AP~ 156 (312)
T cd02871 110 GFD----GLDIDLESGSNPLNATPVITNLISALKQLKDH---YGPNFILTMAPE 156 (312)
T ss_pred CCC----eEEEecccCCccCCcHHHHHHHHHHHHHHHHH---cCCCeEEEECCC
Confidence 422 45555554322111 112333344443332 345667776543
No 197
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=46.00 E-value=41 Score=31.14 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKL 127 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~v 127 (436)
-.++..++.++++|.+.|-++.. .| .+.++.|..+..+|.++|+++
T Consensus 135 V~vetAiaml~dmG~~SiKffPM-~G-------------l~~leE~~avA~aca~~g~~l 180 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPM-GG-------------LKHLEEYAAVAKACAKHGFYL 180 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeec-CC-------------cccHHHHHHHHHHHHHcCCcc
Confidence 45889999999999999998643 11 234677788889999999974
No 198
>PRK09989 hypothetical protein; Provisional
Probab=45.73 E-value=40 Score=31.86 Aligned_cols=61 Identities=10% Similarity=0.123 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+.+++.++.++++|+..|+++... .+. ...+....+...+.|..+.+.|+++|+.+.+...
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g~---~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l 145 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAGV---VPA-GEDAERYRAVFIDNLRYAADRFAPHGKRILVEAL 145 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECccC---CCC-CCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 457788888899999999974321 000 0000011123567888999999999999987654
No 199
>PRK01060 endonuclease IV; Provisional
Probab=45.49 E-value=1.3e+02 Score=28.57 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKL 127 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~v 127 (436)
..+++.++.++++|++.|=++......| .+..++++. ++.+-+.++++||.+
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~p~~~-----~~~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGNPQQW-----KRKPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCC-----cCCCCCHHH---HHHHHHHHHHcCCCC
Confidence 3488999999999999999976422111 122344443 455667788999984
No 200
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=45.32 E-value=35 Score=33.65 Aligned_cols=94 Identities=13% Similarity=0.258 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCC-ChHHHHHHHHHHHHHHhccccccccccCCC
Q 013811 115 FVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFR-NPVVKGYYKNLIKTVLNRYNTFTGIHYKDD 193 (436)
Q Consensus 115 ~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~-~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~ 193 (436)
..++.|+++|++|+=++.-.|+ ++ ..|... +.. +++-...+.+-+-+|++. |+=|
T Consensus 46 ~widaAHrnGV~vLGTiife~~--~~----~~~~~~----------ll~~~~~g~~~~A~kLi~ia~~--------yGFD 101 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWG--GG----AEWCEE----------LLEKDEDGSFPYADKLIEIAKY--------YGFD 101 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--------HHHHHH----------HT---TTS--HHHHHHHHHHHH--------HT--
T ss_pred hhHHHHHhcCceEEEEEEecCC--ch----HHHHHH----------HHcCCcccccHHHHHHHHHHHH--------cCCC
Confidence 4789999999999888765443 22 223321 111 222233456667788877 7655
Q ss_pred CcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 194 PTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 194 p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
+|-|-=|-........+.+..|++++.+..++ .|+..|.
T Consensus 102 ----Gw~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 102 ----GWLINIETPLSGPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp ----EEEEEEEESSTTGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred ----ceEEEecccCCchhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 56655555543212357899999999999999 8877664
No 201
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=44.12 E-value=35 Score=32.95 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=12.8
Q ss_pred cCCcEEEEecCCCCC
Q 013811 313 LRKPILLAEFGKSRK 327 (436)
Q Consensus 313 ~~kPv~i~EfG~~~~ 327 (436)
..|||+++|+|++.-
T Consensus 205 ~sKpIwftE~Gcpav 219 (299)
T PF13547_consen 205 QSKPIWFTEYGCPAV 219 (299)
T ss_pred CCcceEEEecCCchh
Confidence 479999999999863
No 202
>PLN02561 triosephosphate isomerase
Probab=43.97 E-value=2.9e+02 Score=26.31 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=34.7
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
...|+++|++.+=+ .|++- +..|+|. =+.+..-+..|.++||.+|+++-.
T Consensus 81 ~~mL~d~G~~~vii-GHSER--------R~~f~Et-d~~v~~Kv~~al~~gl~pIvCvGE 130 (253)
T PLN02561 81 AEMLVNLGIPWVIL-GHSER--------RALLGES-NEFVGDKVAYALSQGLKVIACVGE 130 (253)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCccCCC-hHHHHHHHHHHHHCcCEEEEEcCC
Confidence 45788999999988 55542 2224443 234456677899999999999743
No 203
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=43.10 E-value=80 Score=33.31 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
+.++.+++..++.|+..+|++... |+ ++.+...++.+++.|..+...+
T Consensus 97 dvv~~fv~~a~~~Gidi~RIfd~l--------------nd--v~nl~~ai~~vk~ag~~~~~~i 144 (499)
T PRK12330 97 EVVDRFVEKSAENGMDVFRVFDAL--------------ND--PRNLEHAMKAVKKVGKHAQGTI 144 (499)
T ss_pred hHHHHHHHHHHHcCCCEEEEEecC--------------Ch--HHHHHHHHHHHHHhCCeEEEEE
Confidence 578899999999999999995431 11 4778889999999999885554
No 204
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=42.05 E-value=2.6e+02 Score=27.70 Aligned_cols=108 Identities=19% Similarity=0.324 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCC--EEEEecccCCCCCCChhhhhh-----HHhhcCC-CCCCCCCCCCChHHHHHHHHHHHHHHhcccc
Q 013811 113 LDFVIAEARKYGI--KLILSLANNYDSFGGKKQYVN-----WARSQGQ-FLTSDDDFFRNPVVKGYYKNLIKTVLNRYNT 184 (436)
Q Consensus 113 lD~~i~~a~~~Gi--~vil~l~~~w~~~gg~~~y~~-----W~~~~G~-~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~ 184 (436)
+..+++++++.|+ -|++.|.-.+..+. ...|.+ +....+. .+..-..||++|...+++.+.+++-++.
T Consensus 104 i~~~v~~l~~~gv~~iv~~pLyPqyS~sT-t~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~--- 179 (320)
T COG0276 104 IEEAVEELKKDGVERIVVLPLYPQYSSST-TGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAK--- 179 (320)
T ss_pred HHHHHHHHHHcCCCeEEEEECCccccccc-HHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHh---
Confidence 3478889999999 55555544332221 112221 1111121 2223468999999999999888887776
Q ss_pred ccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhcc
Q 013811 185 FTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSI 230 (436)
Q Consensus 185 ~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~ 230 (436)
+.-++.++.+.-=-=|....+ .++.+...+++.+..|++.
T Consensus 180 -----~~~~~~~llfSaHglP~~~~~-~GDpY~~q~~~t~~li~e~ 219 (320)
T COG0276 180 -----HPRDDDVLLFSAHGLPKRYID-EGDPYPQQCQETTRLIAEA 219 (320)
T ss_pred -----cCCCCeEEEEecCCCchhhhh-cCCchHHHHHHHHHHHHHH
Confidence 432344444443322322222 2567888889999888863
No 205
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=41.51 E-value=20 Score=24.82 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=13.2
Q ss_pred CcchhHH-HHHHHHHHHhhccccc
Q 013811 1 MRRLHLA-FAIFLAFFIHRQSFNV 23 (436)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~ 23 (436)
||++-.+ ++.|+..+.+.+|.+.
T Consensus 2 mKk~i~~i~~~l~~~~~l~~CnTv 25 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTACNTT 25 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4553333 4455555667788774
No 206
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=41.08 E-value=3.1e+02 Score=25.71 Aligned_cols=92 Identities=15% Similarity=0.145 Sum_probs=55.3
Q ss_pred hhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhcccccc
Q 013811 107 EQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFT 186 (436)
Q Consensus 107 ~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~t 186 (436)
+...+.++++++.|++.|...|.... |..+ .. ++.++..+.+.+.++.++..
T Consensus 81 ~~~~~~~~~~i~~a~~lga~~i~~~~------g~~~----------------~~-~~~~~~~~~~~~~l~~l~~~----- 132 (258)
T PRK09997 81 EEFRDGVAAAIRYARALGNKKINCLV------GKTP----------------AG-FSSEQIHATLVENLRYAANM----- 132 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECC------CCCC----------------CC-CCHHHHHHHHHHHHHHHHHH-----
Confidence 44567889999999999999765432 1100 00 22345566777788888776
Q ss_pred ccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCC
Q 013811 187 GIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNH 234 (436)
Q Consensus 187 g~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~ 234 (436)
.++..-.+++|..|-+..... ...-..++.+.|+++++..
T Consensus 133 ---a~~~Gv~l~lE~~n~~~~~~~-----~~~~~~~~~~ll~~v~~~~ 172 (258)
T PRK09997 133 ---LMKEDILLLIEPINHFDIPGF-----HLTGTRQALKLIDDVGCCN 172 (258)
T ss_pred ---HHHcCCEEEEEeCCCcCCCCC-----ccCCHHHHHHHHHHhCCCC
Confidence 566666788888776432110 0011244556677776544
No 207
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=40.42 E-value=78 Score=32.26 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
+.++..++...+.|++++|+|-. ++ | .+.|...+..++++|..+...+.
T Consensus 98 DvVe~Fv~ka~~nGidvfRiFDA-------lN------D---~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 98 DVVEKFVEKAAENGIDVFRIFDA-------LN------D---VRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred HHHHHHHHHHHhcCCcEEEechh-------cc------c---hhHHHHHHHHHHhcCceeEEEEE
Confidence 57888889999999999998532 11 1 35677899999999999877663
No 208
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=39.92 E-value=67 Score=31.37 Aligned_cols=156 Identities=14% Similarity=0.109 Sum_probs=85.6
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCC-ccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhh
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPL-QRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQY 144 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~l-q~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y 144 (436)
+.+.+.+.++.+++.|+.+==++. |.+|..- .-..-.+|++.|-....+++++++.|+++++.++-+-.. ..+.|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~l--D~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~--~~~~~ 97 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHL--DCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ--KSPLF 97 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEE--ecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC--CchhH
Confidence 346789999999999977644332 2223210 001234677778888999999999999999987633111 11122
Q ss_pred hhHHh------h-cCCCC--------CCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCC
Q 013811 145 VNWAR------S-QGQFL--------TSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTS 209 (436)
Q Consensus 145 ~~W~~------~-~G~~~--------~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~ 209 (436)
.+=.. . .|... ....| |++|++++.+.+.++.+.+- .+.+ .|.=+||+-...
T Consensus 98 ~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~~--Gid~----------~~~D~~e~~p~~ 164 (308)
T cd06593 98 KEAAEKGYLVKKPDGSVWQWDLWQPGMGIID-FTNPDACKWYKDKLKPLLDM--GVDC----------FKTDFGERIPTD 164 (308)
T ss_pred HHHHHCCeEEECCCCCeeeecccCCCccccc-CCCHHHHHHHHHHHHHHHHh--CCcE----------EecCCCCCCCcc
Confidence 21000 0 01100 00112 57899999999888877642 1111 233367753321
Q ss_pred CC-----ChH-----HHHHHHHHHHHHhhccCCC-CEEEe
Q 013811 210 DP-----SGR-----TIQAWITEMASYVKSIDRN-HLLEA 238 (436)
Q Consensus 210 ~~-----~~~-----~~~~w~~~~~~~Ir~~Dp~-~lV~v 238 (436)
.. .+. ....+.+.+.+.+++..++ ++++.
T Consensus 165 ~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~ 204 (308)
T cd06593 165 VVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVW 204 (308)
T ss_pred ccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 10 111 1233456667778777665 35443
No 209
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=39.80 E-value=98 Score=33.47 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEe
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILS 130 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~ 130 (436)
+.++.+++.+++.|+..+|++... ++ ++.+...++.|+++|+.+..+
T Consensus 97 dvv~~~v~~a~~~Gid~~rifd~l--------------nd--~~~~~~ai~~ak~~G~~~~~~ 143 (593)
T PRK14040 97 DVVERFVERAVKNGMDVFRVFDAM--------------ND--PRNLETALKAVRKVGAHAQGT 143 (593)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeeC--------------Cc--HHHHHHHHHHHHHcCCeEEEE
Confidence 467889999999999999996321 11 456777888888888875433
No 210
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=39.69 E-value=76 Score=33.00 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
..++++++.+.+.|+..+|++.... + ...+...++.|+++|+.+.+.+
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~ln--------------d--~~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALN--------------D--VRNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecC--------------c--HHHHHHHHHHHHHcCCeEEEEE
Confidence 4678899999999999999965311 1 1347789999999999987665
No 211
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=39.44 E-value=75 Score=32.46 Aligned_cols=89 Identities=12% Similarity=0.216 Sum_probs=62.9
Q ss_pred HHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEE
Q 013811 118 AEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIM 197 (436)
Q Consensus 118 ~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~ 197 (436)
..|++||++|+=++...|.. |+. . -..|..+++..+.+.+.+.++++. ++=+
T Consensus 118 n~AHrHGV~vlGTFItEw~e-g~~-~--------------c~~~La~~es~~~~~e~L~~l~~~--------fgFd---- 169 (526)
T KOG2331|consen 118 NTAHRHGVKVLGTFITEWDE-GKA-T--------------CKEFLATEESVEMTVERLVELARF--------FGFD---- 169 (526)
T ss_pred chhhhcCceeeeeEEEEecc-chh-H--------------HHHHHccchhHHHHHHHHHHHHHH--------hCCc----
Confidence 58999999999998877753 221 1 134555666678888888888887 6655
Q ss_pred EEEe--ecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEE
Q 013811 198 AWEL--MNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLE 237 (436)
Q Consensus 198 ~weL--~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~ 237 (436)
+|-+ .|-..... -+.+..++..+.+..++.-|+-+|.
T Consensus 170 GWLiNiEn~i~~~~---i~~l~~F~~~Lt~~~~~~~p~~~Vi 208 (526)
T KOG2331|consen 170 GWLINIENKIDLAK---IPNLIQFVSHLTKVLHSSVPGGLVI 208 (526)
T ss_pred eEEEEeeeccChhh---CccHHHHHHHHHHHHhhcCCCceEE
Confidence 4544 44333321 2368899999999999999998885
No 212
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=39.42 E-value=85 Score=32.69 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCC-------CCccCCCCCChhh---hhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYR-------PLQRSPGSYNEQM---FKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~-------~lq~~pg~~~~~~---l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
..+.+.|+.|+..-+|++-.++..+-..| .++ ..|.|++.. -+..-.+|+-|+-+||+|++.+.
T Consensus 198 ~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~-~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD 271 (542)
T KOG2499|consen 198 KVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELH-RKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFD 271 (542)
T ss_pred HHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhh-hcCCCCcceeecHHHHHHHHHHHHhccceeeeccc
Confidence 57999999999999999998664322121 111 335555421 34556899999999999999874
No 213
>PRK10318 hypothetical protein; Provisional
Probab=39.36 E-value=13 Score=30.96 Aligned_cols=15 Identities=27% Similarity=0.693 Sum_probs=12.2
Q ss_pred CCEEeeCCeEEECCe
Q 013811 31 GFIRTRGSHFLLNGN 45 (436)
Q Consensus 31 ~fv~v~g~~f~~nGk 45 (436)
++|.-++-.|+.||.
T Consensus 34 ~~~~~s~c~FiRNG~ 48 (121)
T PRK10318 34 GLAQKKDCTFVRNGD 48 (121)
T ss_pred HHHhcCCCEEEECCC
Confidence 567778888999996
No 214
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=39.22 E-value=63 Score=30.96 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=37.3
Q ss_pred HHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 71 STAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
.++++.+.+.|+..||+... ...++.+..+++.|+++|+.|.+.+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~----------------~~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFH----------------KHEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecc----------------cccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46788888999999998321 224778889999999999999988753
No 215
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=39.03 E-value=84 Score=25.99 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKL 127 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~v 127 (436)
+.+...++.+++..-+..++....|. ..-++.+-.+++.|++.|+.-
T Consensus 76 ~~L~~~l~~~~~~~~~~~~v~i~aD~-------------~~~y~~vv~vl~~l~~~g~~~ 122 (130)
T PF02472_consen 76 EELEARLKELKQKNPDPVRVLIRADK-------------DAPYQDVVDVLDALREAGFTK 122 (130)
T ss_dssp CCHHHHHHHHCCC-TTS--EEEEE-T-------------TS-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhhccCCCcceEEEEeCC-------------CCCHHHHHHHHHHHHHcCCCE
Confidence 35666666665544333222222332 223677788999999998863
No 216
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=38.93 E-value=3.1e+02 Score=26.63 Aligned_cols=66 Identities=12% Similarity=0.363 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC-------CCCCChHHHHHHHHHHHHHhhccCC
Q 013811 160 DFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC-------TSDPSGRTIQAWITEMASYVKSIDR 232 (436)
Q Consensus 160 ~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~-------~~~~~~~~~~~w~~~~~~~Ir~~Dp 232 (436)
.|| +|+.++..+.+++++... .+-| |+ .++.-.-.. ........+..|+.++++++|+..|
T Consensus 118 kYW-~~eWkdii~~~l~rL~d~--GfdG--------vy-LD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~ 185 (300)
T COG2342 118 KYW-EPEWKDIIRSYLDRLIDQ--GFDG--------VY-LDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANP 185 (300)
T ss_pred ecc-CHHHHHHHHHHHHHHHHc--cCce--------EE-EeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCC
Confidence 455 478888888888888875 1222 22 222222100 0011245788999999999999999
Q ss_pred CCEEEe
Q 013811 233 NHLLEA 238 (436)
Q Consensus 233 ~~lV~v 238 (436)
. ++.+
T Consensus 186 ~-~~Vi 190 (300)
T COG2342 186 L-FRVI 190 (300)
T ss_pred c-EEEE
Confidence 8 4443
No 217
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=38.69 E-value=1.3e+02 Score=29.51 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCC--CCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPG--SYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg--~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
+.+.+++.++.+++.|.+.|.++.-.....+. ..++ .++ .+.+..++++|+++|+.+.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~--~~~~~~~~~---~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG--DPPPDTQFS---EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC--CCCcccCcC---HHHHHHHHHHHHHcCCEEEEEe
Confidence 35778899999999999999996521100000 0111 234 3556789999999999887654
No 218
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=38.54 E-value=43 Score=32.11 Aligned_cols=59 Identities=17% Similarity=0.035 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCEEEEccc-cCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 72 TAFHEAASHGLTVARTWAF-SDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 72 ~~l~~l~~~G~N~vRi~~~-~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
++++.+.+.|+..||++.. ++. ..+..-+.=-++.++.+..++..|+++|++|.+++.+
T Consensus 75 ~di~~a~~~g~~~i~i~~~~S~~---~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 75 DDARIAVETGVDGVDLVFGTSPF---LREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHcCcCEEEEEEecCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5788888999999999542 110 0111111112567888999999999999999888743
No 219
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=37.78 E-value=26 Score=33.22 Aligned_cols=50 Identities=12% Similarity=0.103 Sum_probs=33.4
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
...|+++|++.+=+ .|++- +-.|+|+ -+.+..-+..|.++||.+|+++-.
T Consensus 77 ~~mL~d~G~~~vii-GHSER--------R~~f~Et-d~~i~~Kv~~al~~gl~pIvCvGE 126 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-GHSER--------RQYFGET-DEIINKKVKAALENGLTPIVCVGE 126 (244)
T ss_dssp HHHHHHTTESEEEE-SCHHH--------HHHST-B-HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHhhCCEEEe-ccccc--------cCccccc-cHHHHHHHHHHHHCCCEEEEEecc
Confidence 45789999999988 45431 1112222 345667788999999999999854
No 220
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=37.33 E-value=4.4e+02 Score=26.40 Aligned_cols=171 Identities=13% Similarity=0.180 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhccccccccccCCCC--cEEEEEeecCCCCCCC----CChHHHHHHHHHHHHHhhcc-CCCCEE-Ee
Q 013811 167 VKGYYKNLIKTVLNRYNTFTGIHYKDDP--TIMAWELMNEPRCTSD----PSGRTIQAWITEMASYVKSI-DRNHLL-EA 238 (436)
Q Consensus 167 ~~~~~~~~v~~iv~r~n~~tg~~yk~~p--~I~~weL~NEp~~~~~----~~~~~~~~w~~~~~~~Ir~~-Dp~~lV-~v 238 (436)
....|.+.+..|...+ ..|+ +| .++-|-..=|+..... .+.+++.+....+..++++. -+.++. .-
T Consensus 156 l~~~Y~~~~ski~D~~-----~~~~-s~~~vtiy~r~~mE~n~~~FwWg~~d~~~yk~lw~~~~dy~~~~r~l~~lk~~y 229 (355)
T COG4124 156 LSGNYDAMMSKIGDAL-----AAYK-SNQVVTIYWRPEMEMNSGWFWWGFWDPNQYKQLWIRLHDYLRKSRGLPWLKFMY 229 (355)
T ss_pred hhhhHHHHHHHHHHHH-----HHhc-CCCceEEEechhhccCCCeeeeccCCHHHHHHHHHHHHHHHhhccCCCeeEEEE
Confidence 4556666666666552 1144 34 5677988888886532 25677888888999998875 123332 21
Q ss_pred -CCCcccCCCCCccccCCCCCcccchhhhhcCCCCcceEEeecCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHhcCCcE
Q 013811 239 -GLEGFYGQSTPQRKRVNPNLDIGTDFVANNLIPGIDFATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPI 317 (436)
Q Consensus 239 -G~~g~~~~~~~~~~~~np~~~~g~df~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv 317 (436)
+..++ .....++|+ ..++|+++.-.|.+.-....... ...-+.+.+.---..++. ++||+
T Consensus 230 spn~~~-----~~~~~yYPG------------d~YVDiVGL~~ysd~~~n~~~~~-~~~tyaelt~~gy~~~~~-~nKPf 290 (355)
T COG4124 230 SPNGGF-----KGLEAYYPG------------DNYVDIVGLDVYSDDPYNQGDTG-RDKTYAELTGPGYNRVAG-FNKPF 290 (355)
T ss_pred cCCCCc-----ccchhcCCC------------CceeeeeeeeccccCcccccccc-ccccHHHHhcCcchhhhh-cCCce
Confidence 11110 111234443 35678888888865321100000 000011111000012233 79999
Q ss_pred EEEecCCCCCCC---CC--ChHHHHHHHHHHHHHHHHHhhcCCCccceeecccccC
Q 013811 318 LLAEFGKSRKDP---GY--STYQRDVMFNTVYYKIYSSAKRGGAAAGGLFWQLLTE 368 (436)
Q Consensus 318 ~i~EfG~~~~~~---g~--~~~~r~~~~~~~~~~i~~~~~~~~~~~G~~~W~~~~~ 368 (436)
.+.|.|....+. .+ ..+.+...+..+-++|+.. ..-..+|.+...
T Consensus 291 ~faElGp~~~~DYV~~~n~~~~~~~~~~~~~SaaI~kn------~~~a~~~~~~~g 340 (355)
T COG4124 291 GFAELGPEGGGDYVDAWNADVQIKPADFPKWSAAIYKN------YSEAYYWIIDGG 340 (355)
T ss_pred eeecccccCCCcccccccccceecccccHHHHHHHhcc------CcceecccccCC
Confidence 999999876531 01 1233444455555555543 223445655543
No 221
>PRK10658 putative alpha-glucosidase; Provisional
Probab=37.32 E-value=1.6e+02 Score=32.34 Aligned_cols=108 Identities=16% Similarity=0.259 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCC-CccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhh
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRP-LQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYV 145 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~-lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 145 (436)
.+.+.+.++.+++.|+.+==++ + |..|-. .+-..-.+|++.|-....++++.++.|+++++.+.-+-.. ..+.|.
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~-l-D~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~--~s~~f~ 357 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFH-F-DCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ--KSPLFK 357 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEE-E-chhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC--CchHHH
Confidence 3567788899999998743332 1 212210 0001234677777778899999999999999886532211 111222
Q ss_pred hHHhhc--------CCCC-----C---CCCCCCCChHHHHHHHHHHHHHHh
Q 013811 146 NWARSQ--------GQFL-----T---SDDDFFRNPVVKGYYKNLIKTVLN 180 (436)
Q Consensus 146 ~W~~~~--------G~~~-----~---~~~~f~~~~~~~~~~~~~v~~iv~ 180 (436)
+ +.+. |... + ...+ |+||++++.|.+.++.++.
T Consensus 358 e-~~~~gy~vk~~~G~~~~~~~W~g~~~~~D-ftnp~ar~W~~~~~~~l~d 406 (665)
T PRK10658 358 E-GKEKGYLLKRPDGSVWQWDKWQPGMAIVD-FTNPDACKWYADKLKGLLD 406 (665)
T ss_pred H-HHHCCeEEECCCCCEeeeeecCCCceeec-CCCHHHHHHHHHHHHHHHh
Confidence 1 0111 1100 0 0123 5789999999999998775
No 222
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=37.08 E-value=75 Score=30.98 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCC---CCC---CccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGG---YRP---LQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~---~~~---lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
++..+++.|+.+|+.|+|++=+=.-.|-+ |+. +....+..+ -+-.+..+|..|++.|||+|-...
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~--~f~Di~~~iKkaKe~giY~IARiV 145 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVN--KFKDIEPVIKKAKENGIYAIARIV 145 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccc--cccccHHHHHHHHhcCeEEEEEEE
Confidence 34788999999999999999873322211 211 111111112 266678999999999999987654
No 223
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=36.80 E-value=1.4e+02 Score=27.77 Aligned_cols=64 Identities=11% Similarity=0.256 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
...++..++.+++.|+..+|++..... ...+..-+.-.++.++.+..++..|+++|+.+.+.+.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSD--LHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSH--HHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccH--HHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 356777788889999999999653210 0001111212356788889999999999999977764
No 224
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=36.75 E-value=43 Score=31.89 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 71 STAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.++++.+.+.|+..||+...... . .++..-+.-.++.++.+..+++.|+++|+.|.+.+.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~-~-~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSD-I-HLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 45678888999999999543110 0 011111112356788899999999999999876653
No 225
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=35.57 E-value=39 Score=23.67 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=14.3
Q ss_pred HHHHHHhhccCCCCEEEeC
Q 013811 221 TEMASYVKSIDRNHLLEAG 239 (436)
Q Consensus 221 ~~~~~~Ir~~Dp~~lV~vG 239 (436)
.++.+.|+++||+..|++.
T Consensus 30 ~~l~~~I~~~Dp~AFi~v~ 48 (55)
T PF10035_consen 30 PKLKKIIKEIDPKAFISVS 48 (55)
T ss_dssp HHHHHHHHCC-TT-EEEE-
T ss_pred HHHHHHHHHhCCCEEEEEE
Confidence 6778999999999999874
No 226
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=35.43 E-value=42 Score=33.84 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHCCCCEEEEccccCCC------CCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEe
Q 013811 69 KVSTAFHEAASHGLTVARTWAFSDGG------YRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILS 130 (436)
Q Consensus 69 ~~~~~l~~l~~~G~N~vRi~~~~d~~------~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~ 130 (436)
+.+...+.++.-+++.|=.=-.++.. ...-.|.+| |.+..++.|..++..+.++||+||++
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~~g-Y~~~~~~~L~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPTKG-YAPDFVRDLRPLLPAAAEKGIKVITN 77 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHHHHHHHhCCCCEEEe
Confidence 44555666666777776551111100 001123445 99999999999999999999999885
No 227
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=35.06 E-value=1.2e+02 Score=28.89 Aligned_cols=68 Identities=10% Similarity=0.013 Sum_probs=37.7
Q ss_pred CcchhHHHH--HHHHHHHhhcccccccccCCCCC-EEee--CCeEEECCeEEEEEeecccccccccCCcchhhhHHHHHH
Q 013811 1 MRRLHLAFA--IFLAFFIHRQSFNVLHVEAGDGF-IRTR--GSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFH 75 (436)
Q Consensus 1 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f-v~v~--g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~ 75 (436)
|+++-++++ +||.+|++.+|++. -....++ .+|. -+.|.+.+.|-+++=.-+ ...+
T Consensus 1 ~~~~~~~~i~~lll~lllva~C~~s--~~~~~~~~~tVkde~Gt~tv~k~PKRVVVLE~-----------------SFaD 61 (310)
T COG4594 1 MHMKKTAIILTLLLLLLLVAACSSS--DNNQKSKAHTVKDELGTFTVPKTPKRVVVLEL-----------------SFAD 61 (310)
T ss_pred CCchhhHHHHHHHHHHHHHHHhcCc--CcccccceeeeeccCCceecCCCCceEEEEEe-----------------cHHH
Confidence 455555555 44444556667663 2222222 3444 467888777766655443 1245
Q ss_pred HHHHCCCCEEEE
Q 013811 76 EAASHGLTVART 87 (436)
Q Consensus 76 ~l~~~G~N~vRi 87 (436)
.++++|+.=|=+
T Consensus 62 aLaal~v~PVGI 73 (310)
T COG4594 62 ALAALGVTPVGI 73 (310)
T ss_pred HHHHcCCeeeee
Confidence 777888876665
No 228
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=35.04 E-value=57 Score=34.11 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=33.7
Q ss_pred CcchhHHHHHHHHHHHhhcccccccccCCCC--CE-----EeeCCeEEECCeEEE-EEeeccccccc
Q 013811 1 MRRLHLAFAIFLAFFIHRQSFNVLHVEAGDG--FI-----RTRGSHFLLNGNLYF-ANGFNAYWLMY 59 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--fv-----~v~g~~f~~nGkp~~-~~G~N~~~~~~ 59 (436)
|+..+++|++++.+.+++.+.-++ .+...+ -| +|+|..+...||++. |.|+-+..++.
T Consensus 1 m~~~~~~~~l~~~~t~llv~~~~~-~~~~~~~~vv~t~~G~vRG~~~t~~g~~V~aFlGIPfAePPv 66 (601)
T KOG4389|consen 1 MHPKSLLFPLFLLLTLLLVDSVHA-EGPEDDDLVVQTKLGTVRGTELTFPGKPVSAFLGIPFAEPPV 66 (601)
T ss_pred CCcchHHHHHHHHHHHHHhhhhcc-cCCcccceEEeccCCcccceEEecCCceEEEEecCccCCCCC
Confidence 667677777666665555444442 222111 12 445677887777765 88998755443
No 229
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=34.91 E-value=1.2e+02 Score=28.11 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=36.1
Q ss_pred HHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCC
Q 013811 73 AFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYD 136 (436)
Q Consensus 73 ~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~ 136 (436)
..+.+.+.|.+.+=+-...+ ..-+..++..|+++|+.+.++|.+.|+
T Consensus 72 e~~ma~~aGAd~~tV~g~A~-----------------~~TI~~~i~~A~~~~~~v~iDl~~~~~ 118 (217)
T COG0269 72 EARMAFEAGADWVTVLGAAD-----------------DATIKKAIKVAKEYGKEVQIDLIGVWD 118 (217)
T ss_pred HHHHHHHcCCCEEEEEecCC-----------------HHHHHHHHHHHHHcCCeEEEEeecCCC
Confidence 34556689999988844322 345678999999999999999998764
No 230
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=34.42 E-value=54 Score=31.85 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=41.4
Q ss_pred HHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 71 STAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.++++.+.+.|+..|+++..... . ..+.+-+.--++.++.+..+++.|+++|+.+..++.
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s~-~-~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASE-A-FSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 46778888999999999653210 0 011111222357788999999999999999987664
No 231
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=33.86 E-value=2e+02 Score=28.27 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=44.6
Q ss_pred cCCCCcEEEEEeecCCCCCCC----CC---hHHHHHHHHHHHHHhhcc-CCCCEEEeCC-CcccCCCCCccccCCCCCcc
Q 013811 190 YKDDPTIMAWELMNEPRCTSD----PS---GRTIQAWITEMASYVKSI-DRNHLLEAGL-EGFYGQSTPQRKRVNPNLDI 260 (436)
Q Consensus 190 yk~~p~I~~weL~NEp~~~~~----~~---~~~~~~w~~~~~~~Ir~~-Dp~~lV~vG~-~g~~~~~~~~~~~~np~~~~ 260 (436)
+++...-+.|=...|.+.... .. ++.+.+..+.|.++++.. .-+.||-+=+ .+... ....++|
T Consensus 146 l~~~~vPVl~Rp~HE~nG~WfwWg~~~~~~~~~y~~lwr~~~~~l~~~~g~~Nliwvw~~~~~~~----~~~~yYP---- 217 (311)
T PF02156_consen 146 LKDAGVPVLFRPFHEMNGGWFWWGAKGHCTPEQYKALWRHMVDYLRNVKGLHNLIWVWSPNGSRD----DAAEYYP---- 217 (311)
T ss_dssp HHCTTS-EEEEESTSTTSSSSTTSTTSTCHHHHHHHHHHHHHHHHHTTST-TSEEEEE-EBTTSS----CTCTT------
T ss_pred hhcCCCeEEEeehhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHHhccCCceEEEEecCCCCCC----CccccCC----
Confidence 555433344889999986431 12 678899999999999864 3355665411 11100 0112333
Q ss_pred cchhhhhcCCCCcceEEeecCCC
Q 013811 261 GTDFVANNLIPGIDFATVHSYPD 283 (436)
Q Consensus 261 g~df~~~~~~~~iD~~s~H~Y~~ 283 (436)
| ...+|++++-.|..
T Consensus 218 G--------D~yVDivG~D~Y~~ 232 (311)
T PF02156_consen 218 G--------DDYVDIVGVDVYND 232 (311)
T ss_dssp ---------TTT-SEEEEEEEES
T ss_pred C--------CCeEEEEEEeCCCC
Confidence 2 36799999999986
No 232
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=33.85 E-value=2.7e+02 Score=26.82 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=41.9
Q ss_pred hhHHHHHHHHH-HCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAA-SHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~-~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
+.++...+.++ +.|++.--+ .|+|...|...-..|..|-..|++.=++=+..+++|-+ ++.+
T Consensus 42 ~ile~~~k~~~~k~Gi~l~i~-~FtDY~~PN~AL~~gdiDaN~FQH~pyL~~~~k~~~~~-Lv~v 104 (268)
T COG1464 42 EILEVVVKPALKKKGLDLKIV-EFTDYVQPNEALADGDIDANAFQHKPYLDQFNKEHGGK-LVAV 104 (268)
T ss_pred HHHHHHHHHHHHhcCceEEEE-EecCCcchhHHHhcCCccchhhhchHHHHHHHHHcCCC-EEEE
Confidence 44554565555 569986655 67764222222256889999999998888999998888 4444
No 233
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=33.45 E-value=2.9e+02 Score=30.81 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc--CCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR--SPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~--~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
...+++..+.+.++|+..==+|. |..| +. ....+|+..+..+..+++..+++|+++|+.+.
T Consensus 310 ls~~~dvv~~~~~agiPld~~~~--DiDy---Md~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliid 372 (805)
T KOG1065|consen 310 LSVVRDVVENYRAAGIPLDVIVI--DIDY---MDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIID 372 (805)
T ss_pred HHHHHHHHHHHHHcCCCcceeee--ehhh---hhcccceeeccccCcchHHHHHHHHhCCCeEEEEeC
Confidence 35678888899999988544443 2222 21 23346777777788999999999999999986
No 234
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=33.45 E-value=97 Score=30.88 Aligned_cols=47 Identities=21% Similarity=0.161 Sum_probs=36.2
Q ss_pred HHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 71 STAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
.++++.+.+.|+..||+..+.. + .+.+...++.|++.|+.+.+.+..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~--------------e--~~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCT--------------E--ADVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecc--------------h--HHHHHHHHHHHHHCCCeEEEEEEe
Confidence 3678999999999999854311 1 234678999999999999988753
No 235
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=33.38 E-value=91 Score=34.17 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=46.2
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEcccc---CCCCCCCccCC--CCCChhhhhhHHHHHHHHHHcCCEEEEecccCC
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFS---DGGYRPLQRSP--GSYNEQMFKGLDFVIAEARKYGIKLILSLANNY 135 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~---d~~~~~lq~~p--g~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w 135 (436)
+.+..++.|+.|++.|.++|-+=-+. .++ ..+.+.. =.||......+..++...+++|+...+-+...|
T Consensus 70 spe~Fe~QL~~Lk~nGY~~VSL~el~~~~~g~-~~LP~KaV~LTFDDGy~sny~~AlPILKkyg~pATfFvVg~w 143 (672)
T PRK14581 70 RSSALNEQFVWLRDNGYHVVSVDQILAARNGG-PTLPDKAVLLTFDDGYSSFYRRVYPLLKAYKWSAVLAPVGTW 143 (672)
T ss_pred CHHHHHHHHHHHHHCcCEEecHHHHHHHHhcC-CCCCCCeEEEEEEcCCcchHHHHHHHHHHcCCCEEEEEechh
Confidence 34789999999999999998872111 111 0111110 036666666788999999999999987665444
No 236
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=32.87 E-value=1.1e+02 Score=28.85 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
+..++..+++...+|...|-+.+..- +.......+-....+.|.+..+++.++||+++|...|.
T Consensus 84 r~~v~~a~~ya~aLg~~~vh~mag~~----p~~~~~~~~~~t~venLr~aAd~l~~~gi~~liEplN~ 147 (260)
T COG3622 84 RLGVALAIEYATALGCKQVHCLAGIP----PEGVDTEAMWATFVENLRYAADLLAAEGIRLLIEPLNL 147 (260)
T ss_pred HhHHHHHHHHHHHhCCCceeeeecCC----CCCccHHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCC
Confidence 56788999999999999766633210 00001111223467788999999999999999998776
No 237
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=32.66 E-value=54 Score=23.11 Aligned_cols=24 Identities=25% Similarity=0.139 Sum_probs=16.8
Q ss_pred CcchhHHHHHHHHHHHhhcccccc
Q 013811 1 MRRLHLAFAIFLAFFIHRQSFNVL 24 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (436)
||+|.+.-.+||+-|-.++-+.+.
T Consensus 1 MRTL~LLaAlLLlAlqaQAepl~~ 24 (52)
T PF00879_consen 1 MRTLALLAALLLLALQAQAEPLQE 24 (52)
T ss_pred CcHHHHHHHHHHHHHHHhcccccc
Confidence 899988777666666666655553
No 238
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=32.46 E-value=1.9e+02 Score=24.65 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=26.4
Q ss_pred CeEEEEEeecc---cccccccCCcchhhhHHHHHH-HHHHCCCCEEEEcc
Q 013811 44 GNLYFANGFNA---YWLMYVASDPSQRSKVSTAFH-EAASHGLTVARTWA 89 (436)
Q Consensus 44 Gkp~~~~G~N~---~~~~~~~~~~~~~~~~~~~l~-~l~~~G~N~vRi~~ 89 (436)
|.||.+.|.=. +.... ...|.+....+.+++ .++++|.|.|=+.-
T Consensus 60 ~~~~~~LG~V~GesCq~~~-~~~p~s~~~Ar~~~r~kAa~~gaN~Vvl~~ 108 (133)
T PRK10781 60 GKPFRDLGEVSGESCQASN-QDSPPSIPTARKRMQINASKMKANAVLLHS 108 (133)
T ss_pred CCCCceeeeEEccccccCC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 78888888632 11111 112334455666664 46789999988743
No 239
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=32.46 E-value=97 Score=27.76 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHhhcccccccccCCCCCEEeeCCeEEE--CCeEEEEEe
Q 013811 3 RLHLAFAIFLAFFIHRQSFNVLHVEAGDGFIRTRGSHFLL--NGNLYFANG 51 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~v~g~~f~~--nGkp~~~~G 51 (436)
+|++-|++++.||.++. .+.+........|.++..++.. ++....|.|
T Consensus 3 ~~~~~~~~~~~ll~~~~-~a~A~~~d~~~pI~I~AD~~~~~~~~~~~~~tG 52 (180)
T PRK10894 3 KLSLNLLLASSLLAASI-PAFALTGDTDQPIHIDSDQQSLDMQGNVVTFTG 52 (180)
T ss_pred chHHHHHHHHHHHHHHH-HHhhcccccCCCEEEEeCceEeeccCCEEEEEe
Confidence 34444444444443332 2221223445578888888774 244555565
No 240
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=32.25 E-value=96 Score=31.50 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHc--CCEEEEeccc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKY--GIKLILSLAN 133 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~--Gi~vil~l~~ 133 (436)
+..++.++.++++|+.+|-+|....+.....+......-+...+.|+.+.+.|+++ ||++.|...+
T Consensus 115 ~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p 182 (382)
T TIGR02631 115 RKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPKP 182 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 44677889999999999998764222100000000001123456677788888886 5888887543
No 241
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=31.99 E-value=1.1e+02 Score=33.59 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHCCCCEEEE-cccc--CC---CCCCCccCCCCCChh--hhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 68 SKVSTAFHEAASHGLTVART-WAFS--DG---GYRPLQRSPGSYNEQ--MFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi-~~~~--d~---~~~~lq~~pg~~~~~--~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
.+.+..+++++++|+..+=+ ++|. .| +|.-+ .|.+.||+ ..+.|.+++++++++||-+|+++.-+
T Consensus 19 ~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVv--D~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPN 91 (889)
T COG3280 19 ADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVV--DPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPN 91 (889)
T ss_pred HHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCC--CccccChhhcChHHHHHHHHHHHhcCCceEEEeccc
Confidence 57889999999999998766 2221 00 12111 11223442 45678899999999999999998643
No 242
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=31.96 E-value=1.1e+02 Score=30.36 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 71 STAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.++++.+.+.|+..||+..+.. + .+.....++.|++.|+.+...+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~--------------e--~d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCT--------------E--ADVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccc--------------h--HHHHHHHHHHHHHcCCeEEEEEE
Confidence 4678999999999999844311 1 23467899999999999988774
No 243
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=31.95 E-value=2e+02 Score=27.72 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=43.4
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
+.+.+...-+.+|+.|++.+|--+|- | ..+|-.|.--..+.|+.+-..++++|+-++-.+.+
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRGgafK----P--RTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~ 118 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRGGAFK----P--RTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMD 118 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccCCcCC----C--CCCcccccccCHHHHHHHHHHHHHcCCeeEEEecC
Confidence 34778888889999999999974441 1 11332233333467778888999999999877654
No 244
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=31.88 E-value=27 Score=24.01 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHhhccccc
Q 013811 4 LHLAFAIFLAFFIHRQSFNV 23 (436)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (436)
.++.|+|+|.+++++.|-.-
T Consensus 5 KsllLlfflG~ISlSlCeeE 24 (46)
T PF03032_consen 5 KSLLLLFFLGTISLSLCEEE 24 (46)
T ss_pred HHHHHHHHHHHcccchHHHh
Confidence 57888888888888888764
No 245
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=31.45 E-value=3.9e+02 Score=27.65 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
.++...-+.+++.|+|-+=+--.+ . -....-..+.-.+..+..+-+.-+.+||++.|+.
T Consensus 183 qR~kDYAR~laSiGINg~v~NNVN-v----k~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsi 241 (684)
T COG3661 183 QRMKDYARALASIGINGTVLNNVN-V----KKAESYLITAPFLAKAAKLADIFRPYGIKVYLSI 241 (684)
T ss_pred HHHHHHHHHHhhcCcceEEecccc-c----chhhhheechHhHHHHHHHHHHhhhccceEEEEe
Confidence 567788888999999988762111 0 0001111345568888899999999999999987
No 246
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=31.14 E-value=1.1e+02 Score=29.00 Aligned_cols=46 Identities=26% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 71 STAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.++++.+.+.|+..+|+..... + ...+..+++.|+++|+.+.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s--------------~--~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCT--------------E--ADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechh--------------h--HHHHHHHHHHHHHCCCeEEEEEE
Confidence 4778888999999999854311 1 23567899999999999988874
No 247
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.10 E-value=32 Score=27.52 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=2.8
Q ss_pred HHHHhhc
Q 013811 13 AFFIHRQ 19 (436)
Q Consensus 13 ~~~~~~~ 19 (436)
+||++++
T Consensus 15 ~lLlisS 21 (95)
T PF07172_consen 15 ALLLISS 21 (95)
T ss_pred HHHHHHh
Confidence 3344443
No 248
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=30.94 E-value=1.5e+02 Score=28.58 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCC-CC-CChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSP-GS-YNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~p-g~-~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
+.+..++.++.++++|+..+=+ |.+|......+ .. .....-..|.++++-|++.|+.|+|-.+..
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~ 96 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE 96 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC
T ss_pred CHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 4588999999999999999887 33453211000 00 011112457899999999999999887643
No 249
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=30.63 E-value=61 Score=32.66 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 70 VSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
..++++.+.+.|+..||++..... . .++..-+.-.++.++.+..++..|+++|+.|.+++.+
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd-~-~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSP-I-HLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 357788899999999999653210 0 0111111123567888899999999999999887643
No 250
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.17 E-value=5.6e+02 Score=25.44 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccc-----------cCCCCCC-CccCCC-----CCCh-hhhhhHHHHHHHHHHcCCEEE
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAF-----------SDGGYRP-LQRSPG-----SYNE-QMFKGLDFVIAEARKYGIKLI 128 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~-----------~d~~~~~-lq~~pg-----~~~~-~~l~~lD~~i~~a~~~Gi~vi 128 (436)
.+.+++.++.+++.|+.+==+++- .|..|-. -...+. .|++ +.|...+.+|+.+++.|++++
T Consensus 23 ~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv~ 102 (340)
T cd06597 23 QAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKVL 102 (340)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEEE
Confidence 467999999999999875544321 1111100 000111 2332 345568899999999999998
Q ss_pred Eeccc
Q 013811 129 LSLAN 133 (436)
Q Consensus 129 l~l~~ 133 (436)
+.++-
T Consensus 103 l~v~P 107 (340)
T cd06597 103 LWQIP 107 (340)
T ss_pred EEecC
Confidence 86543
No 251
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=29.87 E-value=5.2e+02 Score=25.26 Aligned_cols=101 Identities=15% Similarity=0.259 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHH-cCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhccccccccc
Q 013811 111 KGLDFVIAEARK-YGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIH 189 (436)
Q Consensus 111 ~~lD~~i~~a~~-~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~ 189 (436)
..+..+....++ .++++++.+.. |.... .| ...-.+++.++.|.+-+..++++
T Consensus 70 ~~~~~~~~lk~~~p~lkvl~siGG-~~~s~---~f--------------~~~~~~~~~r~~Fi~siv~~l~~-------- 123 (322)
T cd06548 70 GNFGQLRKLKQKNPHLKILLSIGG-WTWSG---GF--------------SDAAATEASRAKFADSAVDFIRK-------- 123 (322)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEeC-CCCCC---Cc--------------hhHhCCHHHHHHHHHHHHHHHHh--------
Confidence 445555554444 46999999843 32210 01 12235788889898888888888
Q ss_pred cCCCCcEEEEEeecCCCCC-------CCCChHHHHHHHHHHHHHhhcc----CCCCEEEeCC
Q 013811 190 YKDDPTIMAWELMNEPRCT-------SDPSGRTIQAWITEMASYVKSI----DRNHLLEAGL 240 (436)
Q Consensus 190 yk~~p~I~~weL~NEp~~~-------~~~~~~~~~~w~~~~~~~Ir~~----Dp~~lV~vG~ 240 (436)
|.=+---+-|| .|... ...+.+.+..+++++.+++++. .++.++++..
T Consensus 124 ~~fDGidiDwE---~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av 182 (322)
T cd06548 124 YGFDGIDIDWE---YPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKYLLTIAA 182 (322)
T ss_pred cCCCeEEECCc---CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEEc
Confidence 54443334455 23221 0113467888899999888875 3456676643
No 252
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=29.59 E-value=1.3e+02 Score=31.47 Aligned_cols=49 Identities=27% Similarity=0.339 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEe
Q 013811 70 VSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILS 130 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~ 130 (436)
-.+.|+.|-+.|+|++|+ -|++|.+ ++.-..++.+=+.+++.|-.|-|-
T Consensus 19 s~e~l~~li~aG~nV~Rl-NfSHG~~-----------e~h~~~i~~vR~~~~~~~~~vaIl 67 (477)
T COG0469 19 SEEMLEKLIEAGMNVVRL-NFSHGDH-----------EEHKKRIDNVREAAEKLGRPVAIL 67 (477)
T ss_pred CHHHHHHHHHccCcEEEE-ecCCCCh-----------HHHHHHHHHHHHHHHHhCCceEEE
Confidence 447788999999999999 4666532 344566777777777777766443
No 253
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=29.22 E-value=5.3e+02 Score=24.91 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=41.5
Q ss_pred CCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhccCCCCEEEe
Q 013811 161 FFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKSIDRNHLLEA 238 (436)
Q Consensus 161 f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~v 238 (436)
...++..++.|.+-+-.++++ |+=+--.+-||-. .. .+.+.+..+++++.+.+++. +.++++
T Consensus 82 ~l~~~~~R~~fi~~iv~~~~~--------~~~dGidiD~E~~---~~---~d~~~~~~fl~eL~~~l~~~--~~~lsv 143 (298)
T cd06549 82 LLADPSARAKFIANIAAYLER--------NQADGIVLDFEEL---PA---DDLPKYVAFLSELRRRLPAQ--GKQLTV 143 (298)
T ss_pred HhcCHHHHHHHHHHHHHHHHH--------hCCCCEEEecCCC---Ch---hHHHHHHHHHHHHHHHhhhc--CcEEEE
Confidence 456889999898888888877 5544334445522 11 13567889999999999875 344554
No 254
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=29.19 E-value=66 Score=31.13 Aligned_cols=60 Identities=20% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHHHHHHCCCCEEEEcccc-CCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 71 STAFHEAASHGLTVARTWAFS-DGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~-d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
+++++.+.+.|++.|++.... +. ..+..-+.-.++.++.+..++..|+++|+.|.+.+.+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~---h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLK---HCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHH---HHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 457889999999999996521 10 0111111223678999999999999999999988754
No 255
>PRK10426 alpha-glucosidase; Provisional
Probab=29.02 E-value=7.9e+02 Score=26.84 Aligned_cols=153 Identities=15% Similarity=0.181 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCcc-C-------CCCCChhhhhhHHHHHHHHHHcCCEEEEecccCCCCC
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQR-S-------PGSYNEQMFKGLDFVIAEARKYGIKLILSLANNYDSF 138 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~-~-------pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~ 138 (436)
.+.+.+.++.+++.|+.+==+|. | .|..... . .-.+|++.+-..+.+|++.++.|+++++.++-+...
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~l--d-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~- 295 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWA--Q-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS- 295 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEE--e-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC-
Confidence 35688999999999987665554 2 1321100 0 114578888889999999999999999987644221
Q ss_pred CChhhhhhHHhhcCCCCC---------------CCCCCCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEE-EEee
Q 013811 139 GGKKQYVNWARSQGQFLT---------------SDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMA-WELM 202 (436)
Q Consensus 139 gg~~~y~~W~~~~G~~~~---------------~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~-weL~ 202 (436)
+.+.|.+= .+.|.-+. ..---|+||++++.|.+.+++.+.. + .|-+ |.=+
T Consensus 296 -~~~~y~e~-~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~--------~----Gvdg~w~D~ 361 (635)
T PRK10426 296 -DGDLCEEA-AEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIG--------L----GCSGWMADF 361 (635)
T ss_pred -CCHHHHHH-HHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhh--------c----CCCEEeeeC
Confidence 22334321 11111000 0011267899999998887654332 1 1333 4558
Q ss_pred cCCCCCCC-----CChHH-----HHHHHHHHHHHhhccCC-CCEEE
Q 013811 203 NEPRCTSD-----PSGRT-----IQAWITEMASYVKSIDR-NHLLE 237 (436)
Q Consensus 203 NEp~~~~~-----~~~~~-----~~~w~~~~~~~Ir~~Dp-~~lV~ 237 (436)
||+-.... .+... ...|.+...+.+++..+ .+++.
T Consensus 362 ~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ 407 (635)
T PRK10426 362 GEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEILF 407 (635)
T ss_pred CCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 88543211 11221 22345566677777766 24443
No 256
>PRK05434 phosphoglyceromutase; Provisional
Probab=29.01 E-value=1.8e+02 Score=30.78 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
..+...++.+++.|++-|++++|.||..- -....+..++.+.+.+++.|.--|-++.
T Consensus 128 ~hl~~l~~~a~~~g~~~v~vH~~~DGRD~--------~p~s~~~~i~~l~~~~~~~~~~~iasv~ 184 (507)
T PRK05434 128 DHLFALLELAKEEGVKKVYVHAFLDGRDT--------PPKSALGYLEELEAKLAELGVGRIASVS 184 (507)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecCCCCC--------CchhHHHHHHHHHHHHHHhCCeeEEEEe
Confidence 56788899999999999999999987431 1245678888888888888886666664
No 257
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=28.95 E-value=1.6e+02 Score=34.65 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=41.6
Q ss_pred EEEeecccccccccCCcchhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEE
Q 013811 48 FANGFNAYWLMYVASDPSQRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKL 127 (436)
Q Consensus 48 ~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~v 127 (436)
.++|.|.- .+. +.....++...+.+++.|++++|++-.- | .++.|...++++++.|..+
T Consensus 610 l~Rg~n~v--gy~---~ypd~vv~~f~~~~~~~GidifrifD~l--------------N--~~~n~~~~~~~~~~~g~~~ 668 (1143)
T TIGR01235 610 LLRGANGV--GYT---NYPDNVVKYFVKQAAQGGIDIFRVFDSL--------------N--WVENMRVGMDAVAEAGKVV 668 (1143)
T ss_pred eecccccc--Ccc---CCCHHHHHHHHHHHHHcCCCEEEECccC--------------c--CHHHHHHHHHHHHHcCCEE
Confidence 36788852 221 1123577888888999999999995321 1 1556667777777777777
Q ss_pred EEecc
Q 013811 128 ILSLA 132 (436)
Q Consensus 128 il~l~ 132 (436)
..++.
T Consensus 669 ~~~i~ 673 (1143)
T TIGR01235 669 EAAIC 673 (1143)
T ss_pred EEEEE
Confidence 65553
No 258
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=28.25 E-value=68 Score=32.28 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 71 STAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.++++.+.+.|+..||++..... . .++..-+.=.++.++.+..+++.|+++|+.|.+++.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd-~-~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSD-L-QIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCH-H-HHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 56788889999999999653210 0 011111111356788889999999999999887654
No 259
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=28.01 E-value=1.4e+02 Score=32.07 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEc--cccCCCCCCCccCCC----CC-----ChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 66 QRSKVSTAFHEAASHGLTVARTW--AFSDGGYRPLQRSPG----SY-----NEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~--~~~d~~~~~lq~~pg----~~-----~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
+.+..++.|+.|+++.||.+-++ ..... .++-...+ .| .+-....+...|++|+++||+++..-
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~--~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Yn 190 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHH--KPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYN 190 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTT--B-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccC--CcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhH
Confidence 35789999999999999999983 22110 01111111 11 12346678899999999999999874
No 260
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.54 E-value=1.6e+02 Score=24.20 Aligned_cols=42 Identities=33% Similarity=0.542 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEE
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLI 128 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vi 128 (436)
.+.+.+.++.+.++|+. ++|.++ |..+ +++++.|+++||+++
T Consensus 65 ~~~~~~~v~~~~~~g~~--~v~~~~-----------g~~~-------~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVK--AVWLQP-----------GAES-------EELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHHT-S--EEEE-T-----------TS---------HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHcCCC--EEEEEc-----------chHH-------HHHHHHHHHcCCEEE
Confidence 47788999999999988 444432 2223 478899999999976
No 261
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.41 E-value=5.3e+02 Score=24.27 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCC----hhhhhhHHHHHHHHHHcCCEEEEe
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYN----EQMFKGLDFVIAEARKYGIKLILS 130 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~----~~~l~~lD~~i~~a~~~Gi~vil~ 130 (436)
..+.+.-+.+++.|+.+.=+.......++ .+..+ ++.++.+.++++.|++.|...|..
T Consensus 52 ~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~-----~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 52 EERLSLVKAIYETGVRIPSMCLSGHRRFP-----FGSRDPATRERALEIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHHHcCCCceEEecccccCcC-----CCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45666677788899886654211000011 11123 346888999999999999998763
No 262
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.25 E-value=77 Score=29.99 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCC---hhhhhhHHHHHHHHHHcCCEEEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYN---EQMFKGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~---~~~l~~lD~~i~~a~~~Gi~vil 129 (436)
+.+.+.++...++|+..|=+++|+-..|.+ .+.+.+ .-....++..++.+.++||+|-+
T Consensus 39 ~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R---~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~ 100 (241)
T PRK14842 39 NAIDRLMDASLEYGLKNISLYAFSTENWKR---PITEIRSIFGLLVEFIETRLDTIHARGIRIHH 100 (241)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 678899999999999999999998655532 111110 01223445556677889999854
No 263
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=27.14 E-value=1e+02 Score=30.73 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=41.1
Q ss_pred HHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 71 STAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.-..+.++++|.+.|=+.++.+.+. +...+...++.+.++.++|+++||-+++.+.
T Consensus 109 ~~sve~a~~~GAdAVk~lv~~~~d~------~~~~~~~~~~~l~rv~~ec~~~giPlllE~l 164 (340)
T PRK12858 109 NWSVRRIKEAGADAVKLLLYYRPDE------DDAINDRKHAFVERVGAECRANDIPFFLEPL 164 (340)
T ss_pred cccHHHHHHcCCCEEEEEEEeCCCc------chHHHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 3346779999999999977632210 1112457788899999999999999999753
No 264
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=26.98 E-value=3.7e+02 Score=25.25 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEE
Q 013811 69 KVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 69 ~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil 129 (436)
-+...|+.++++|++.|-+|......+ .+..+++ ..++.+-+.++++||.+.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~-----~~~~~~~---~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSW-----KGVRLSE---ETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCC-----CCCCCCH---HHHHHHHHHHHHcCCCEEE
Confidence 366889999999999999976422111 0112333 3456677788899998644
No 265
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=26.98 E-value=1.2e+02 Score=29.06 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHhhccCCCCEEEeC
Q 013811 213 GRTIQAWITEMASYVKSIDRNHLLEAG 239 (436)
Q Consensus 213 ~~~~~~w~~~~~~~Ir~~Dp~~lV~vG 239 (436)
-+...+.++++.++.++++|+.+|...
T Consensus 194 l~~a~~~~~~i~~aa~~v~~dii~l~h 220 (268)
T PF09370_consen 194 LEEAAERIQEIFDAARAVNPDIIVLCH 220 (268)
T ss_dssp HHHHHHHHHHHHHHHHCC-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 356677788999999999999988764
No 266
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=26.81 E-value=6e+02 Score=24.72 Aligned_cols=67 Identities=9% Similarity=0.190 Sum_probs=41.3
Q ss_pred CCCChHHHHHHHHHHHHHHhccccccccccCCCCcEEE-EEeecCCCCCC-CCChHHHHHHHHHHHHHhhccCCCCEEEe
Q 013811 161 FFRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMA-WELMNEPRCTS-DPSGRTIQAWITEMASYVKSIDRNHLLEA 238 (436)
Q Consensus 161 f~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~-weL~NEp~~~~-~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~v 238 (436)
...++..++.|.+-+..++++ |.=+---+- || .|.... ..+.+.+..+++++.+.+++.+..-.|++
T Consensus 86 ~~~~~~~R~~fi~s~~~~~~~--------~~~DGidiD~we---~p~~~~~~~d~~~~~~~l~el~~~l~~~~~~l~~~v 154 (318)
T cd02876 86 LLNDEQEREKLIKLLVTTAKK--------NHFDGIVLEVWS---QLAAYGVPDKRKELIQLVIHLGETLHSANLKLILVI 154 (318)
T ss_pred HHcCHHHHHHHHHHHHHHHHH--------cCCCcEEEechh---hhcccCCHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 346889999999888888887 543322121 43 232211 11346788899999999987654334443
No 267
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=26.70 E-value=1.6e+02 Score=31.71 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
+.++.+++.+.+.|+..+|++... ++ .+.+...++.|+++|+.+..++
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~l--------------nd--~~n~~~~i~~ak~~G~~v~~~i 138 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDAL--------------ND--PRNLQAAIQAAKKHGAHAQGTI 138 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEec--------------Cc--HHHHHHHHHHHHHcCCEEEEEE
Confidence 468889999999999999996431 11 2567788899999999888765
No 268
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=25.75 E-value=2.6e+02 Score=24.56 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHHCCCCEE-EEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 66 QRSKVSTAFHEAASHGLTVA-RTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~v-Ri~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
|.+.++...+.+++.|+..- |+ +..+ .. =++|..+...|+++|++|||.-
T Consensus 14 D~~~mk~Aa~~L~~fgi~ye~~V-vSAH-RT--------------Pe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 14 DWDTMKKAAEILEEFGVPYEVRV-VSAH-RT--------------PEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEE-Eecc-CC--------------HHHHHHHHHHHHHCCCeEEEec
Confidence 55678888999999999864 44 2221 11 1467788999999999999974
No 269
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=25.70 E-value=1.6e+02 Score=31.87 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
..++.+++.+++.|+..+|++... ++ +..+...++.|+++|+.+..++
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~l--------------nd--~~n~~~~i~~ak~~G~~v~~~i 143 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDAL--------------ND--VRNMEVAIKAAKKAGAHVQGTI 143 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEec--------------Ch--HHHHHHHHHHHHHcCCEEEEEE
Confidence 568889999999999999996431 11 3667888999999999988666
No 270
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.69 E-value=83 Score=29.63 Aligned_cols=59 Identities=8% Similarity=0.201 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCC---hhhhhhHHHHHHHHHHcCCEEEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYN---EQMFKGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~---~~~l~~lD~~i~~a~~~Gi~vil 129 (436)
+.+.+.++...++|+..|=+++|+-..|.+ .+.+.+ .-....++..++.+.++||+|-+
T Consensus 34 ~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R---~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~ 95 (233)
T PRK14841 34 EVLHNTVKWSLELGIKYLTAFSFSTENWKR---PKEEVEFLMDLFVQMIDREMELLRRERVRVRI 95 (233)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 678899999999999999999998655532 110000 01122344556667789998754
No 271
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=25.57 E-value=1.1e+02 Score=30.19 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=42.3
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
.+.++++|.+.+-+.+.-+.+ .+-..|+.....+.++.++|++.+|-.+|.+..+
T Consensus 111 ~~rike~GadavK~Llyy~pD------~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY 165 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYDVD------EPDEINEQKKAYIERIGSECVAEDIPFFLEILTY 165 (324)
T ss_pred HHHHHHhCCCeEEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeec
Confidence 467899999999996653321 1223556778889999999999999999998753
No 272
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.49 E-value=90 Score=31.61 Aligned_cols=60 Identities=8% Similarity=0.174 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 71 STAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.++++.+.+.|+..||++..... . .++..-+.--++.++.+..+++.|+++|+.|.+++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd-~-h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSD-I-HIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 56788888999999998543210 0 011111222367889999999999999999988753
No 273
>PRK09810 entericidin A; Provisional
Probab=25.47 E-value=49 Score=22.12 Aligned_cols=13 Identities=15% Similarity=0.020 Sum_probs=8.5
Q ss_pred HHHHHHhhccccc
Q 013811 11 FLAFFIHRQSFNV 23 (436)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (436)
+++++++.+|.+.
T Consensus 10 ~~~~~~L~aCNTv 22 (41)
T PRK09810 10 LLASTLLTGCNTA 22 (41)
T ss_pred HHHHHHHhhhhhc
Confidence 4455567788875
No 274
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.45 E-value=90 Score=31.29 Aligned_cols=61 Identities=15% Similarity=0.038 Sum_probs=41.5
Q ss_pred HHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 70 VSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
..++++.+.+.|+..|.++..... . -.+.+-+.-.++.++.+..+++.|+++|++|...+.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd-~-h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASE-S-FSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 457788888899999888642110 0 011111222367899999999999999999976663
No 275
>COG1934 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.38 E-value=1.4e+02 Score=26.68 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=15.4
Q ss_pred CCCEEeeCCeEEEC--CeEEEEEe
Q 013811 30 DGFIRTRGSHFLLN--GNLYFANG 51 (436)
Q Consensus 30 ~~fv~v~g~~f~~n--Gkp~~~~G 51 (436)
.-.|++++..+.++ .....|.|
T Consensus 30 ~qPi~i~ad~~el~~~~~~a~ftG 53 (173)
T COG1934 30 DQPITIEADQQELDDKNGVATFTG 53 (173)
T ss_pred cCCEEEEccceeeeccCCEEEEEc
Confidence 44699999999874 33555665
No 276
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=25.12 E-value=2.8e+02 Score=26.94 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=47.0
Q ss_pred eEEEEEeecccccccccCCcchhhhHHHHHHHHHH----CCCCEEEEccccCCCCCCCccCCCCCChhh-hhhHHHHHHH
Q 013811 45 NLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAAS----HGLTVARTWAFSDGGYRPLQRSPGSYNEQM-FKGLDFVIAE 119 (436)
Q Consensus 45 kp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~----~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~-l~~lD~~i~~ 119 (436)
..+.+.|-+.- ++++.+.+.-+.+|+ +|++.+|=-+|.- . | ..+|..|.--. -+.|+.+-+.
T Consensus 16 ~~~lIAGPC~i---------Es~e~~~~~A~~lk~~~~~~g~~~i~kgsfkK-A-p--RTSp~sFrG~G~eeGL~iL~~v 82 (290)
T PLN03033 16 PFFLLAGPNVI---------ESEEHILRMAKHIKDISTKLGLPLVFKSSFDK-A-N--RTSSKSFRGPGMAEGLKILEKV 82 (290)
T ss_pred CeEEEecCChh---------cCHHHHHHHHHHHHHHHHhCCCcEEEEeeccC-C-C--CCCCCCCCCCCHHHHHHHHHHH
Confidence 34466676641 123455555555665 5999999755520 0 1 22454454333 3566667778
Q ss_pred HHHcCCEEEEecccC
Q 013811 120 ARKYGIKLILSLANN 134 (436)
Q Consensus 120 a~~~Gi~vil~l~~~ 134 (436)
.++.|+.|+-++|+.
T Consensus 83 k~~~glpvvTeV~~~ 97 (290)
T PLN03033 83 KVAYDLPIVTDVHES 97 (290)
T ss_pred HHHHCCceEEeeCCH
Confidence 899999999999864
No 277
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=24.83 E-value=55 Score=30.74 Aligned_cols=50 Identities=14% Similarity=0.255 Sum_probs=36.7
Q ss_pred CcchhHHHHHHHHHHHhhcccccccccCCCCCEEeeCCeEEECCeEEEEEeecccccccccCCcchhhhHHHHHHHHHHC
Q 013811 1 MRRLHLAFAIFLAFFIHRQSFNVLHVEAGDGFIRTRGSHFLLNGNLYFANGFNAYWLMYVASDPSQRSKVSTAFHEAASH 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~l~~~ 80 (436)
||+++.++.+|++++++..|-.. .+.|.. ..+.-+.+..+..+
T Consensus 1 ~k~~~~~l~~l~l~l~L~gCk~~------------------------Ly~gL~-------------e~eANemlAlL~~~ 43 (246)
T COG4669 1 MKSLRKYLFLLLLILLLTGCKVD------------------------LYTGLS-------------EKEANEMLALLMSH 43 (246)
T ss_pred CchHHHHHHHHHHHHHHhcchHH------------------------HHcCCC-------------HhHHHHHHHHHHHc
Confidence 88999988888888888877643 111111 14566889999999
Q ss_pred CCCEEEE
Q 013811 81 GLTVART 87 (436)
Q Consensus 81 G~N~vRi 87 (436)
|+|+-+.
T Consensus 44 gI~A~K~ 50 (246)
T COG4669 44 GINAEKK 50 (246)
T ss_pred CCcceee
Confidence 9999997
No 278
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=24.80 E-value=1.6e+02 Score=28.24 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 75 HEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 75 ~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
..+|+.|.+.+-+.++.+.+ .| ..|+.-+..+.++..+|+..+|-.+|.+..+
T Consensus 118 ~riK~~G~~avK~Lvy~~~D------~~-e~neqk~a~ierigsec~aedi~f~lE~lty 170 (306)
T COG3684 118 KRIKEDGGDAVKFLVYYRSD------ED-EINEQKLAYIERIGSECHAEDLPFFLEPLTY 170 (306)
T ss_pred HHHHHhcccceEEEEEEcCC------ch-HHhHHHHHHHHHHHHHhhhcCCceeEeeeec
Confidence 57899999999997763321 22 4678889999999999999999999988654
No 279
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=24.73 E-value=6.4e+02 Score=24.37 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=37.6
Q ss_pred CCChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChHHHHHHHHHHHHHhhc
Q 013811 162 FRNPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASYVKS 229 (436)
Q Consensus 162 ~~~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~ 229 (436)
-.++..++.|.+-+..++++ |.=+---+-||- |... .+.+.+..+++++.+++++
T Consensus 87 ~~~~~~R~~fi~siv~~l~~--------~~fDGidiDWE~---P~~~--~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 87 ASDPTARKAFINSSIKVARK--------YGFDGLDLDWEF---PSSQ--VEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred hCCHHHHHHHHHHHHHHHHH--------hCCCceeecccC---CCCh--hHHHHHHHHHHHHHHHHHH
Confidence 35788899998888888887 544433444663 3211 1356788899999888874
No 280
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.67 E-value=2.1e+02 Score=25.77 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 73 AFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 73 ~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
.++.+.++|.+.|=++.... -..+.++++.|+++|+++++.+.+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-----------------~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-----------------DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-----------------HHHHHHHHHHHHHcCCEEEEEecC
Confidence 57888999999887754310 123568999999999999998754
No 281
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=24.52 E-value=2.5e+02 Score=29.71 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
.+.+...++.+++.|++-|++++|.||..- -....+..|+.+.+.+++.|..-|-++.
T Consensus 123 ~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~--------~p~s~~~~~~~l~~~~~~~~~~~iasv~ 180 (501)
T TIGR01307 123 IDHLIALIELAAERGIEKVVLHAFTDGRDT--------APKSAESYLEQLQAFLKEIGNGRIATIS 180 (501)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecCCCCC--------CchhHHHHHHHHHHHHHHhCCEEEEEEe
Confidence 356888899999999999999999987431 1245577788888888887876666664
No 282
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=24.29 E-value=2e+02 Score=26.52 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=34.3
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
.+.++++|++.+=+ .|++- + |.|+- +..-+..|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii-GHSER--------R--f~Etd---i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-NHSER--------R--MKLAD---IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-CcccC--------C--CCccH---HHHHHHHHHHCCCEEEEEE
Confidence 45789999999988 55542 1 55543 6788889999999999997
No 283
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=24.10 E-value=3.1e+02 Score=26.63 Aligned_cols=101 Identities=22% Similarity=0.392 Sum_probs=56.9
Q ss_pred hhhhHHHHHHHHHHcCCEEEEecccCCCCCCChhhhhhHHhhcCCCCCCCCCCCCChHHHHHHHHHHHHHHhcccccccc
Q 013811 109 MFKGLDFVIAEARKYGIKLILSLANNYDSFGGKKQYVNWARSQGQFLTSDDDFFRNPVVKGYYKNLIKTVLNRYNTFTGI 188 (436)
Q Consensus 109 ~l~~lD~~i~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~v~~iv~r~n~~tg~ 188 (436)
.+..+..+. ++..|++|+|++.. |... .. .|. ....++..++.|.+-+..++++
T Consensus 60 ~~~~~~~~~--~~~~~~kvllsigg-~~~~--~~---~~~-----------~~~~~~~~r~~f~~~i~~~l~~------- 113 (343)
T PF00704_consen 60 GFKNLKELK--AKNPGVKVLLSIGG-WGMS--SD---GFS-----------QLLSNPAKRQNFINNIVSFLKK------- 113 (343)
T ss_dssp HHHHHHHHH--HHHTT-EEEEEEEE-TTSS--HH---HHH-----------HHHHSHHHHHHHHHHHHHHHHH-------
T ss_pred chhHHHHHH--hhccCceEEEEecc-cccc--cc---ccc-----------cccccHHHHHHHHHhhhhhhcc-------
Confidence 344444333 55669999999843 2111 00 111 1123677788888888888888
Q ss_pred ccCCCCcEEEEEee-cCCCCCCCCChHHHHHHHHHHHHHhhccCC---CCEEEeC
Q 013811 189 HYKDDPTIMAWELM-NEPRCTSDPSGRTIQAWITEMASYVKSIDR---NHLLEAG 239 (436)
Q Consensus 189 ~yk~~p~I~~weL~-NEp~~~~~~~~~~~~~w~~~~~~~Ir~~Dp---~~lV~vG 239 (436)
|+=+---+-||-. +++. ....+.+..+++++.+.+++... +.+|++.
T Consensus 114 -y~~DGidiD~e~~~~~~~---~~~~~~~~~~l~~L~~~l~~~~~~~~~~~ls~a 164 (343)
T PF00704_consen 114 -YGFDGIDIDWEYPSSSGD---PQDKDNYTAFLKELRKALKRANRSGKGYILSVA 164 (343)
T ss_dssp -HT-SEEEEEESSTTSTSS---TTHHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred -cCcceeeeeeeecccccc---chhhhhhhhhhhhhhhhhcccccccceeEEeec
Confidence 6544322223321 1111 12357889999999988887543 6677765
No 284
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=24.05 E-value=2.8e+02 Score=30.34 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=31.3
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHH----HHHHHcCCEEEEecc
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVI----AEARKYGIKLILSLA 132 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i----~~a~~~Gi~vil~l~ 132 (436)
.+.++++|++.+=+ .|++- +..|+| -|.+| ..|.++||.+|+++-
T Consensus 474 a~mLkd~G~~~vii-GHSER--------R~~f~E-----td~~V~~K~~~al~~GL~pIvCVG 522 (645)
T PRK13962 474 GPMLAEIGVEYVII-GHSER--------RQYFGE-----TDELVNKKVLAALKAGLTPILCVG 522 (645)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCCcCc-----chHHHHHHHHHHHHCCCEEEEEcC
Confidence 44788899999888 55542 122333 24455 789999999999974
No 285
>PRK15261 fimbrial protein SteA; Provisional
Probab=24.01 E-value=70 Score=29.14 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=23.2
Q ss_pred CcchhHHHHHHHHHHHhhcccccccccCCCCCEEeeC
Q 013811 1 MRRLHLAFAIFLAFFIHRQSFNVLHVEAGDGFIRTRG 37 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~v~g 37 (436)
||.-|+|++++.++++++.+..+.++.+..|-|+-.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~GtI~F~G 37 (195)
T PRK15261 1 MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLG 37 (195)
T ss_pred CchhhHHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 7888999998888888776544323333344344333
No 286
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=23.95 E-value=5.1e+02 Score=28.76 Aligned_cols=74 Identities=20% Similarity=0.378 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCC----------------CCChh-hh-------hhHHHHHHHHH
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPG----------------SYNEQ-MF-------KGLDFVIAEAR 121 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg----------------~~~~~-~l-------~~lD~~i~~a~ 121 (436)
+.+.+.+.++.|++.|++ +|..+..| +|+.+...+. .+.+. -| ..|..+++.++
T Consensus 217 t~~~I~~~l~~l~~~g~p-~~~vIIDD-GwQs~~~d~~~~~~~~~~~q~~~rL~~f~en~KF~~~~~p~~Glk~~V~~iK 294 (750)
T PLN02684 217 TQEGVEAGLKSLAAGGTP-PKFVIIDD-GWQSVGGDPTVEAGDEKKEQPLLRLTGIKENEKFKKKDDPNVGIKNIVNIAK 294 (750)
T ss_pred CHHHHHHHHHHHHhCCCC-ceEEEEec-ccccccccccccccccccchhhhhhccCccccccccccCCCccHHHHHHHHH
Confidence 347899999999999987 45534444 4755432110 01111 11 37788899886
Q ss_pred -HcCCEEEEecccCCCCCCCh
Q 013811 122 -KYGIKLILSLANNYDSFGGK 141 (436)
Q Consensus 122 -~~Gi~vil~l~~~w~~~gg~ 141 (436)
++||+-|-..|.-....||.
T Consensus 295 ~~~~vk~V~VWHAL~GYWGGv 315 (750)
T PLN02684 295 EKHGLKYVYVWHAITGYWGGV 315 (750)
T ss_pred hhcCCcEEEEEeeeccccccc
Confidence 88998766655432233453
No 287
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.83 E-value=1e+02 Score=29.20 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhh----hhHHHHHHHHHHcCCEEEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMF----KGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l----~~lD~~i~~a~~~Gi~vil 129 (436)
..+.+.++.+.++|+..|=+++|+-..|.+ .+-+. ...+ ..|+..++...++||+|-+
T Consensus 40 ~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R---~~~EV-~~Lm~L~~~~l~~~~~~~~~~~irvr~ 101 (239)
T PRK14839 40 EAIRRVVEAAPDLGIGTLTLYAFSSDNWRR---PAAEV-GGLMRLLRAYLRNETERLARNGVRLTV 101 (239)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhcCC---CHHHH-HHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 578899999999999999999997554532 11100 0112 2344556677888998744
No 288
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.48 E-value=96 Score=29.54 Aligned_cols=62 Identities=10% Similarity=0.115 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil 129 (436)
+.+.+.+....++|+..|=+++|+-..|.+-+.+-...-.-....++..++.+.++|+++-+
T Consensus 51 ~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~~~~~~~~~~iri~~ 112 (249)
T PRK14831 51 DALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRF 112 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 67889999999999999999999754443110000000000112334455677889998754
No 289
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=23.33 E-value=1.1e+02 Score=25.28 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=12.4
Q ss_pred CCCEEeeCCeEEECCeEE
Q 013811 30 DGFIRTRGSHFLLNGNLY 47 (436)
Q Consensus 30 ~~fv~v~g~~f~~nGkp~ 47 (436)
.|-|++...++...|..+
T Consensus 27 ~g~i~v~~~~~~~~gd~L 44 (115)
T PF12984_consen 27 TGQIKVTNVSVEKQGDSL 44 (115)
T ss_pred CCcEEEEeeEEEEECCEE
Confidence 456888888887766543
No 290
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=23.27 E-value=1.2e+02 Score=26.47 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=15.3
Q ss_pred CcchhHHHHHHHHHHHhhc
Q 013811 1 MRRLHLAFAIFLAFFIHRQ 19 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (436)
|.+..+.+++|++||.+.+
T Consensus 1 m~ms~~~~v~l~alls~a~ 19 (158)
T KOG4063|consen 1 MMMSFLKTVILLALLSLAA 19 (158)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 7788888888888887765
No 291
>KOG4115 consensus Dynein-associated protein Roadblock [Cell cycle control, cell division, chromosome partitioning; Cell motility]
Probab=23.21 E-value=3e+02 Score=22.06 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=37.1
Q ss_pred HHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC-----C----hHHHHHHHHHHHHHhhccCCCCEE
Q 013811 173 NLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRCTSDP-----S----GRTIQAWITEMASYVKSIDRNHLL 236 (436)
Q Consensus 173 ~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~~~~~-----~----~~~~~~w~~~~~~~Ir~~Dp~~lV 236 (436)
+.+++++.| +.+.|.|.++-+.|--...... . ..-+..+...+.+.+|.+||..=+
T Consensus 3 ~~vEe~~~R--------~qs~~gV~giiv~d~~GvpikTt~d~~~t~~ya~~l~~L~~kars~VrdlDpsn~L 67 (97)
T KOG4115|consen 3 AEVEETLKR--------LQSYKGVTGIIVVDNAGVPIKTTLDNTTTQQYAALLHPLVEKARSVVRDLDPSNDL 67 (97)
T ss_pred HHHHHHHHH--------HhccCCceeEEEECCCCcEeEeccCchHHHHHHHHHHHHHHHHHHHHHccCCcCce
Confidence 467788888 8888888888887655433211 1 123455566667889999996533
No 292
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=23.06 E-value=2.1e+02 Score=29.94 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
+.++..++.+.+.|+..+|++... ++ ++.+...++.|+++|+.+...+
T Consensus 95 Dvv~~fv~~A~~~Gvd~irif~~l--------------nd--~~n~~~~i~~ak~~G~~v~~~i 142 (467)
T PRK14041 95 DVVELFVKKVAEYGLDIIRIFDAL--------------ND--IRNLEKSIEVAKKHGAHVQGAI 142 (467)
T ss_pred hhhHHHHHHHHHCCcCEEEEEEeC--------------CH--HHHHHHHHHHHHHCCCEEEEEE
Confidence 457777899999999999996431 12 5677889999999999988665
No 293
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.67 E-value=2.1e+02 Score=26.91 Aligned_cols=50 Identities=10% Similarity=0.043 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 69 KVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 69 ~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
..++.++.+++.|++.|=++... + +..+.++.+++.++++||++++.++.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp-------------~--e~~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLL-------------I--DYPDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCC-------------C--CcHHHHHHHHHHHHHcCCCEEEEECC
Confidence 45566778888888877763210 1 11345778999999999999998753
No 294
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=22.66 E-value=1.2e+02 Score=29.16 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCCEEEEcccc-CCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 72 TAFHEAASHGLTVARTWAFS-DGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 72 ~~l~~l~~~G~N~vRi~~~~-d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
..++.+.+.|++.||+.... +. ..+...+.=.++.++.+..+++.|+++|+.|.++..
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~---~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 140 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDL---HVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAE 140 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHH---HHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEE
Confidence 56888999999999985321 10 011122222356788999999999999999987643
No 295
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=22.41 E-value=3.1e+02 Score=27.53 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=46.2
Q ss_pred CcchhhhHHHHHHHHHHCCCCEEEEccccC---------------------CCC-------------CCCccCCCCCChh
Q 013811 63 DPSQRSKVSTAFHEAASHGLTVARTWAFSD---------------------GGY-------------RPLQRSPGSYNEQ 108 (436)
Q Consensus 63 ~~~~~~~~~~~l~~l~~~G~N~vRi~~~~d---------------------~~~-------------~~lq~~pg~~~~~ 108 (436)
+..|-+...+.+..+++.|+..||+-+ .+ ..+ ..+..+||.+..
T Consensus 37 ~T~Dv~atv~Qi~~L~~aGceiVRvav-~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~- 114 (360)
T PRK00366 37 DTADVEATVAQIKRLARAGCEIVRVAV-PDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPGNIGK- 114 (360)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEcc-CCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCc-
Confidence 334556677788889999999999932 21 111 123347777732
Q ss_pred hhhhHHHHHHHHHHcCCEEEEec
Q 013811 109 MFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 109 ~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
.-+++..+++.|+++|+-+=|-.
T Consensus 115 ~~~~v~~vv~~ak~~~ipIRIGv 137 (360)
T PRK00366 115 RDERVREVVEAAKDYGIPIRIGV 137 (360)
T ss_pred hHHHHHHHHHHHHHCCCCEEEec
Confidence 23678999999999999887765
No 296
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.30 E-value=1.1e+02 Score=28.73 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhh----hhHHHHHHHHHHcCCEEEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMF----KGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l----~~lD~~i~~a~~~Gi~vil 129 (436)
+.+++.++...++|+..|=+++|+-..|.+ .+-+.+ ..+ ..|...+....++||+|-+
T Consensus 37 ~~~~~i~~~c~~~GI~~lT~YaFS~EN~~R---p~~EV~-~Lm~L~~~~l~~~~~~~~~~~irvr~ 98 (230)
T PRK14837 37 KRAKEIVKHSLKLGIKYLSLYVFSTENWNR---TDSEIE-HLMFLIADYLSSEFNFYKKNNIKIIV 98 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCC---CHHHHH-HHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 678899999999999999999997555532 110000 111 2233445567788998854
No 297
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=22.28 E-value=1.5e+02 Score=29.33 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=42.2
Q ss_pred HHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 74 FHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 74 l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
.+.+|++|.+.+-+.+.-+.+ .+-..|......+.++.++|++.||-.+|.+..+
T Consensus 112 ~~rike~GadavK~Llyy~pD------~~~ein~~k~a~vervg~ec~a~dipf~lE~ltY 166 (325)
T TIGR01232 112 AKRLKEQGANAVKFLLYYDVD------DAEEINIQKKAYIERIGSECVAEDIPFFLEVLTY 166 (325)
T ss_pred HHHHHHhCCCeEEEEEEeCCC------CChHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 567899999999996653221 1122556678889999999999999999998764
No 298
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=22.14 E-value=1.5e+02 Score=29.38 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=42.7
Q ss_pred HHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEecccC
Q 013811 73 AFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 73 ~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
..+.++++|.+.+-+.+.-+.+ .+-..|......+.++.++|++.+|-.+|.+..+
T Consensus 112 s~~rike~GadavK~Llyy~pD------~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Y 167 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYDVD------GDEEINDQKQAYIERIGSECTAEDIPFFLELLTY 167 (329)
T ss_pred hHHHHHHhCCCeEEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 4567899999999996653221 1122456678889999999999999999998754
No 299
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.14 E-value=1.1e+02 Score=29.12 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCC---hhhhhhHHHHHHHHHHcCCEEEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYN---EQMFKGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~---~~~l~~lD~~i~~a~~~Gi~vil 129 (436)
+.+.+.++...++|+..|=+++|+-..|.+ .+-+.+ .-.-..++..++...++||+|-+
T Consensus 53 ~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R---~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~ 114 (250)
T PRK14840 53 KSLPQIVDTALHLGIEVLTLFAFSTENFSR---SKEEVAELFSLFNSQLDSQLPYLHENEIRLRC 114 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 678899999999999999999997554532 111011 01123445567778889999754
No 300
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.97 E-value=1.4e+02 Score=27.99 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 71 STAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
.++++.+++.|+..||+...... . ..+..-+.=.+..++.+...++.|+++|+.+.+.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~-~-~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE-T-HSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 67899999999999998543110 0 0000001112346788889999999999999998743
No 301
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=21.96 E-value=7.8e+02 Score=24.34 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC-----CCCCChHHHHHHHHHHHHHhhccCCCCEEEe
Q 013811 164 NPVVKGYYKNLIKTVLNRYNTFTGIHYKDDPTIMAWELMNEPRC-----TSDPSGRTIQAWITEMASYVKSIDRNHLLEA 238 (436)
Q Consensus 164 ~~~~~~~~~~~v~~iv~r~n~~tg~~yk~~p~I~~weL~NEp~~-----~~~~~~~~~~~w~~~~~~~Ir~~Dp~~lV~v 238 (436)
+++.++.|.+-+..++++ |.=+---+-||--+.+.. ....+.+.+..+++++.+++++ +.++++
T Consensus 88 ~~~~R~~Fi~si~~~~~~--------~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~---~~~ls~ 156 (345)
T cd02878 88 KPANRDTFANNVVNFVNK--------YNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS---GKSLSI 156 (345)
T ss_pred CHHHHHHHHHHHHHHHHH--------cCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc---CcEEEE
Confidence 688899998888888887 554433445774333221 0111346788888888887764 556665
Q ss_pred C
Q 013811 239 G 239 (436)
Q Consensus 239 G 239 (436)
.
T Consensus 157 a 157 (345)
T cd02878 157 A 157 (345)
T ss_pred E
Confidence 4
No 302
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=21.90 E-value=1.2e+02 Score=28.52 Aligned_cols=58 Identities=17% Similarity=0.356 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhh----hhHHHHHHHHHHcCCEEEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMF----KGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l----~~lD~~i~~a~~~Gi~vil 129 (436)
+.+++.++...++|+..|=+++|+-..|.+ .+.+. ...+ ..|+..++...++||+|-+
T Consensus 30 ~~~~~v~~~c~~~GI~~lT~yaFStEN~~R---p~~EV-~~Lm~L~~~~l~~~~~~~~~~~irvr~ 91 (226)
T TIGR00055 30 KSLRRILRWCANLGVECLTLYAFSTENWKR---PKEEV-DFLMELFEKKLDREVKELHRYNVRIRI 91 (226)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCc---CHHHH-HHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 678899999999999999999997655532 11000 0112 2334445567789998854
No 303
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=21.71 E-value=3e+02 Score=27.46 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=45.8
Q ss_pred CcchhhhHHHHHHHHHHCCCCEEEEcccc--------------------CCCC-------------CCCccCCCCCChhh
Q 013811 63 DPSQRSKVSTAFHEAASHGLTVARTWAFS--------------------DGGY-------------RPLQRSPGSYNEQM 109 (436)
Q Consensus 63 ~~~~~~~~~~~l~~l~~~G~N~vRi~~~~--------------------d~~~-------------~~lq~~pg~~~~~~ 109 (436)
+..|-+...+.+..+++.|+..||+-+-. |..+ ..+..+||.+..
T Consensus 29 ~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~-- 106 (346)
T TIGR00612 29 DTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGF-- 106 (346)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCC--
Confidence 33455667778888999999999993211 1111 112346776654
Q ss_pred hhhHHHHHHHHHHcCCEEEEec
Q 013811 110 FKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 110 l~~lD~~i~~a~~~Gi~vil~l 131 (436)
-+++..+++.|+++|+-+=|-.
T Consensus 107 ~e~v~~vv~~ak~~~ipIRIGV 128 (346)
T TIGR00612 107 RERVRDVVEKARDHGKAMRIGV 128 (346)
T ss_pred HHHHHHHHHHHHHCCCCEEEec
Confidence 4678899999999999887765
No 304
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=21.63 E-value=1.9e+02 Score=29.41 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhh---------hhhHHHHHHHHHHcCCE-EEEecc
Q 013811 70 VSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQM---------FKGLDFVIAEARKYGIK-LILSLA 132 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~---------l~~lD~~i~~a~~~Gi~-vil~l~ 132 (436)
-++.|+.|++.|+|-|=+ -.+. ++++. .+.....++.+++.|+. +-++|.
T Consensus 114 t~e~l~~l~~~Gvnrisl--GvQS-----------~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI 173 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSL--GVQA-----------FQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLI 173 (400)
T ss_pred CHHHHHHHHHCCCCEEEE--Eccc-----------CCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEee
Confidence 357789999999994444 2111 22322 23445678899999998 667774
No 305
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.56 E-value=1.3e+02 Score=28.94 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCCEEEEcccc-CCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEeccc
Q 013811 71 STAFHEAASHGLTVARTWAFS-DGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSLAN 133 (436)
Q Consensus 71 ~~~l~~l~~~G~N~vRi~~~~-d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l~~ 133 (436)
.++++.+.+.|+..|+++... +. ..+.+-+.-.++.++.+...+..|+++|+.+.+++..
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~---~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~ 136 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASET---FSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVST 136 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHH---HHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 467889999999999996532 21 0111112122577888899999999999999888753
No 306
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.52 E-value=1.2e+02 Score=28.43 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhh----hhHHHHHHHHHHcCCEEEE
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMF----KGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l----~~lD~~i~~a~~~Gi~vil 129 (436)
+.+.+.++.+.++|+..|=+++|+-..|.+- +-+. ...+ ..|+..+....++|++|-+
T Consensus 24 ~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~---~~Ev-~~Lm~l~~~~l~~~~~~~~~~~i~vr~ 85 (229)
T PRK10240 24 KSVRRAVSFAANNGIEALTLYAFSSENWNRP---AQEV-SALMELFVWALDSEVKSLHRHNVRLRI 85 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeehhhcCcC---HHHH-HHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 5788999999999999999999986555321 0000 0111 2233445557788888754
No 307
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=20.90 E-value=7.7e+02 Score=23.90 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=39.1
Q ss_pred hhHHHHHHHHH----HCCCCEEEEccccCCCCCCCccCCCCCChhh-hhhHHHHHHHHHHcCCEEEEecccC
Q 013811 68 SKVSTAFHEAA----SHGLTVARTWAFSDGGYRPLQRSPGSYNEQM-FKGLDFVIAEARKYGIKLILSLANN 134 (436)
Q Consensus 68 ~~~~~~l~~l~----~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~-l~~lD~~i~~a~~~Gi~vil~l~~~ 134 (436)
+.+.+.-+.+| ++|++.+|--.|. . +=..+|..|.--. -+.|+.+-+..+++||.|+-++|+.
T Consensus 30 e~~~~iA~~lk~i~~~~g~~~~fK~sf~-K---apRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~~~ 97 (281)
T PRK12457 30 DFTLDVCGEYVEVTRKLGIPFVFKASFD-K---ANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVHEV 97 (281)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEeeeccC-C---CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeCCH
Confidence 34444444443 6999998874442 1 0122454454333 3567777788899999999999865
No 308
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=20.87 E-value=1.9e+02 Score=20.70 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=5.6
Q ss_pred ECCeEEEEEe
Q 013811 42 LNGNLYFANG 51 (436)
Q Consensus 42 ~nGkp~~~~G 51 (436)
++|....+.|
T Consensus 31 ItGeSv~I~g 40 (59)
T PF02495_consen 31 ITGESVTISG 40 (59)
T ss_pred EeCcEEEEEC
Confidence 4455555565
No 309
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=20.61 E-value=1.3e+02 Score=28.18 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCC---hhhhhhHHHHHHHHHHcCCEEEE
Q 013811 67 RSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYN---EQMFKGLDFVIAEARKYGIKLIL 129 (436)
Q Consensus 67 ~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~---~~~l~~lD~~i~~a~~~Gi~vil 129 (436)
.+.+.+.++...++|+..|=+++|+-..|.+ .+.+.+ .-.-..++..++.+.++|++|-+
T Consensus 30 ~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R---~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~ 92 (221)
T cd00475 30 AEKLRDILRWCLELGVKEVTLYAFSTENWKR---PKEEVDFLMELFRDVLRRILKELEKLGVRIRI 92 (221)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhhCc---CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 3678899999999999999999997555532 111100 01223445566667788998854
No 310
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=20.46 E-value=5.4e+02 Score=21.94 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEE
Q 013811 66 QRSKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLI 128 (436)
Q Consensus 66 ~~~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vi 128 (436)
+.+.+...|..+.+.+-|- |+....|.. ..++.+-.+++.+++.|+.=+
T Consensus 80 ~~~~l~~~l~~~~~~~~~~-~v~i~aD~~-------------v~y~~vv~vm~~l~~aG~~~v 128 (137)
T COG0848 80 SLEELEAALAALAKGKKNP-RVVIRADKN-------------VKYGTVVKVMDLLKEAGFKKV 128 (137)
T ss_pred cHHHHHHHHHHHhcCCCCc-eEEEEeCCC-------------CCHHHHHHHHHHHHHcCCceE
Confidence 3467888888888766664 443333431 125567788999999998743
No 311
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=20.41 E-value=1.2e+03 Score=26.65 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.9
Q ss_pred hhhhhHHHHHHHHHHcCCEEEEecc
Q 013811 108 QMFKGLDFVIAEARKYGIKLILSLA 132 (436)
Q Consensus 108 ~~l~~lD~~i~~a~~~Gi~vil~l~ 132 (436)
..++.|..+|++|+++||+||-.++
T Consensus 805 ~~~~~l~~~i~~~~~~~~~~ig~~~ 829 (912)
T TIGR02171 805 ENMNSLKAFIDETAKKGVKVIGTIF 829 (912)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 4588999999999999999988765
No 312
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.41 E-value=1.4e+02 Score=29.94 Aligned_cols=58 Identities=7% Similarity=-0.020 Sum_probs=33.3
Q ss_pred HHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCC-CChhhhhhHHHHHHHHHHcCCE-EEEecc
Q 013811 70 VSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGS-YNEQMFKGLDFVIAEARKYGIK-LILSLA 132 (436)
Q Consensus 70 ~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~-~~~~~l~~lD~~i~~a~~~Gi~-vil~l~ 132 (436)
-++.++.|++.|+|.|=+ -.+...+.+...-|. ++ .+.+...++.++++|+. +-++|.
T Consensus 102 t~e~l~~lk~~G~nrisi--GvQS~~d~vL~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI 161 (353)
T PRK05904 102 TQSQINLLKKNKVNRISL--GVQSMNNNILKQLNRTHT---IQDSKEAINLLHKNGIYNISCDFL 161 (353)
T ss_pred CHHHHHHHHHcCCCEEEE--ecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 357889999999995544 212110001000011 22 33455788899999986 667764
No 313
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=20.11 E-value=1.6e+02 Score=22.88 Aligned_cols=11 Identities=55% Similarity=0.603 Sum_probs=9.1
Q ss_pred CcchhHHHHHH
Q 013811 1 MRRLHLAFAIF 11 (436)
Q Consensus 1 ~~~~~~~~~~~ 11 (436)
||+|.++.+.+
T Consensus 1 MR~~~~aa~a~ 11 (82)
T PF12071_consen 1 MRRLLLAALAL 11 (82)
T ss_pred ChhHHHHHHHH
Confidence 89998888766
No 314
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=20.09 E-value=2.4e+02 Score=26.37 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHCCCCEEEEccccCCCCCCCccCCCCCChhhhhhHHHHHHHHHHcCCEEEEec
Q 013811 68 SKVSTAFHEAASHGLTVARTWAFSDGGYRPLQRSPGSYNEQMFKGLDFVIAEARKYGIKLILSL 131 (436)
Q Consensus 68 ~~~~~~l~~l~~~G~N~vRi~~~~d~~~~~lq~~pg~~~~~~l~~lD~~i~~a~~~Gi~vil~l 131 (436)
..++..|+.++++|+++|-| ++|.- +=.....-++|+.|.+.|..|.-.+
T Consensus 90 ~kvdeyl~e~~~lGfe~iEI---S~G~i-----------~m~~eek~~lIe~a~d~Gf~vlsEv 139 (258)
T COG1809 90 DKVDEYLNEAKELGFEAIEI---SNGTI-----------PMSTEEKCRLIERAVDEGFMVLSEV 139 (258)
T ss_pred ccHHHHHHHHHHcCccEEEe---cCCee-----------ecchHHHHHHHHHHHhcccEEehhh
Confidence 46788888899999998887 44311 1113455688999999999986544
Done!