Your job contains 1 sequence.
>013813
MNFKPITMIPLRVTSLYPPLPTVKPTMAQTRTRTLHSDPSQDSDDLLCSDSNNHDNQQEQ
PEHEEPSSLPETASSSLPSPRGYLSGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRM
LCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE
PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQD
TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED
VQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC
EKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLY
KKDADDAEILADDLAS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013813
(436 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2155528 - symbol:AT5G67220 species:3702 "Arabi... 1556 9.6e-160 1
ZFIN|ZDB-GENE-030131-1435 - symbol:dus1l "dihydrouridine ... 729 4.1e-72 1
FB|FBgn0031238 - symbol:CG3645 species:7227 "Drosophila m... 728 5.3e-72 1
UNIPROTKB|E2R9L8 - symbol:DUS1L "Uncharacterized protein"... 721 2.9e-71 1
UNIPROTKB|J9NYR0 - symbol:DUS1L "Uncharacterized protein"... 721 2.9e-71 1
RGD|708389 - symbol:Pp3111 "PP3111 protein" species:10116... 721 2.9e-71 1
MGI|MGI:1915980 - symbol:Dus1l "dihydrouridine synthase 1... 718 6.1e-71 1
DICTYBASE|DDB_G0278803 - symbol:dus1l "tRNA-dihydrouridin... 717 7.7e-71 1
UNIPROTKB|J3QLE4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 716 9.9e-71 1
UNIPROTKB|Q6P1R4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 716 9.9e-71 1
UNIPROTKB|E1BWI8 - symbol:DUS1L "Uncharacterized protein"... 705 1.4e-69 1
UNIPROTKB|E1C6D2 - symbol:DUS1L "Uncharacterized protein"... 705 1.4e-69 1
UNIPROTKB|G3N340 - symbol:DUS1L "Uncharacterized protein"... 700 4.9e-69 1
POMBASE|SPBC36B7.04 - symbol:SPBC36B7.04 "tRNA dihydrouri... 667 1.6e-67 2
UNIPROTKB|J3QQZ0 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 640 1.1e-62 1
UNIPROTKB|E1BH75 - symbol:DUS1L "Uncharacterized protein"... 633 6.2e-62 1
SGD|S000004545 - symbol:DUS1 "Dihydrouridine synthase" sp... 631 1.0e-61 1
CGD|CAL0004455 - symbol:orf19.1404 species:5476 "Candida ... 624 5.5e-61 1
WB|WBGene00009452 - symbol:F36A2.2 species:6239 "Caenorha... 603 9.3e-59 1
UNIPROTKB|G4MUR1 - symbol:MGG_08825 "tRNA-dihydrouridine ... 455 2.6e-57 2
ASPGD|ASPL0000054271 - symbol:AN0956 species:162425 "Emer... 468 1.3e-55 2
ZFIN|ZDB-GENE-040801-233 - symbol:dus4l "dihydrouridine s... 472 7.1e-45 1
DICTYBASE|DDB_G0291360 - symbol:dus4l "tRNA-dihydrouridin... 455 4.5e-43 1
UNIPROTKB|J3QKP9 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 454 5.7e-43 1
UNIPROTKB|F1NHN2 - symbol:DUS4L "tRNA-dihydrouridine synt... 445 5.2e-42 1
UNIPROTKB|E2RRJ8 - symbol:DUS4L "Uncharacterized protein"... 443 8.4e-42 1
UNIPROTKB|O95620 - symbol:DUS4L "tRNA-dihydrouridine(20a/... 440 1.7e-41 1
MGI|MGI:1919166 - symbol:Dus4l "dihydrouridine synthase 4... 430 2.0e-40 1
RGD|1311445 - symbol:Dus4l "dihydrouridine synthase 4-lik... 429 2.6e-40 1
UNIPROTKB|D4A0T1 - symbol:Dus4l "Protein Dus4l" species:1... 429 2.6e-40 1
WB|WBGene00016674 - symbol:C45G9.2 species:6239 "Caenorha... 405 8.9e-38 1
FB|FBgn0032750 - symbol:CG10495 species:7227 "Drosophila ... 403 1.5e-37 1
SGD|S000004397 - symbol:DUS4 "Dihydrouridine synthase" sp... 403 1.5e-37 1
POMBASE|SPCC777.15 - symbol:SPCC777.15 "tRNA dihydrouridi... 399 3.9e-37 1
CGD|CAL0003746 - symbol:orf19.966 species:5476 "Candida a... 393 1.7e-36 1
UNIPROTKB|A6QPA8 - symbol:DUS4L "DUS4L protein" species:9... 387 7.2e-36 1
UNIPROTKB|I3LP14 - symbol:DUS4L "Uncharacterized protein"... 384 1.5e-35 1
UNIPROTKB|H0YGW8 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 369 5.8e-34 1
UNIPROTKB|J3QQL9 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 360 5.2e-33 1
UNIPROTKB|Q8EJR8 - symbol:dusB "tRNA-dihydrouridine synth... 341 5.4e-31 1
TIGR_CMR|SO_0394 - symbol:SO_0394 "conserved hypothetical... 341 5.4e-31 1
UNIPROTKB|Q3A9L8 - symbol:CHY_2369 "tRNA-dihydrouridine s... 333 3.8e-30 1
TIGR_CMR|CHY_2369 - symbol:CHY_2369 "putative TIM-barrel ... 333 3.8e-30 1
TIGR_CMR|GSU_1005 - symbol:GSU_1005 "dihydrouridine synth... 328 1.3e-29 1
ZFIN|ZDB-GENE-100922-233 - symbol:dus2l "dihydrouridine s... 330 1.3e-29 1
MGI|MGI:1913619 - symbol:Dus2l "dihydrouridine synthase 2... 320 1.6e-28 1
RGD|1305612 - symbol:Dus2l "dihydrouridine synthase 2-lik... 319 2.1e-28 1
UNIPROTKB|Q9NX74 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 318 2.7e-28 1
UNIPROTKB|Q0VC60 - symbol:DUS2L "Uncharacterized protein"... 314 7.9e-28 1
UNIPROTKB|I3LES5 - symbol:DUS2L "Uncharacterized protein"... 310 2.2e-27 1
TAIR|locus:2114713 - symbol:AT3G49640 species:3702 "Arabi... 305 3.5e-27 1
UNIPROTKB|E2RKU2 - symbol:DUS2L "Uncharacterized protein"... 307 4.9e-27 1
UNIPROTKB|Q81VW4 - symbol:BA_0075 "tRNA-dihydrouridine sy... 299 1.5e-26 1
UNIPROTKB|Q87VS1 - symbol:dusB "tRNA-dihydrouridine synth... 299 1.5e-26 1
TIGR_CMR|BA_0075 - symbol:BA_0075 "TIM-barrel protein, pu... 299 1.5e-26 1
TIGR_CMR|NSE_0373 - symbol:NSE_0373 "putative tRNA-dihydr... 296 3.2e-26 1
UNIPROTKB|E1C4F6 - symbol:DUS2L "Uncharacterized protein"... 296 8.7e-26 1
TIGR_CMR|APH_0575 - symbol:APH_0575 "putative tRNA-dihydr... 288 2.2e-25 1
TIGR_CMR|CJE_0118 - symbol:CJE_0118 "tRNA-dihydrouridine ... 286 3.6e-25 1
UNIPROTKB|P0ABT5 - symbol:dusB "tRNA-dihydrouridine synth... 282 9.7e-25 1
UNIPROTKB|Q9KV66 - symbol:dusB "tRNA-dihydrouridine synth... 282 9.7e-25 1
TIGR_CMR|VC_0291 - symbol:VC_0291 "NifR3/Smm1 family prot... 282 9.7e-25 1
UNIPROTKB|Q607L4 - symbol:MCA1745 "tRNA-dihydrouridine sy... 281 1.2e-24 1
TIGR_CMR|SPO_2089 - symbol:SPO_2089 "tRNA-dihydrouridine ... 274 6.8e-24 1
UNIPROTKB|Q489F6 - symbol:CPS_0550 "tRNA-dihydrouridine s... 272 1.1e-23 1
TIGR_CMR|CPS_0550 - symbol:CPS_0550 "NifR3/Smm1 family pr... 272 1.1e-23 1
TIGR_CMR|ECH_0758 - symbol:ECH_0758 "putative tRNA-dihydr... 265 6.1e-23 1
FB|FBgn0030554 - symbol:CG1434 species:7227 "Drosophila m... 276 1.4e-22 1
WB|WBGene00013201 - symbol:Y54E5A.6 species:6239 "Caenorh... 268 1.4e-21 1
UNIPROTKB|J3QLD5 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 253 1.5e-21 1
DICTYBASE|DDB_G0283877 - symbol:dus2l "tRNA-dihydrouridin... 256 3.4e-20 1
UNIPROTKB|Q884C6 - symbol:dusC "tRNA-dihydrouridine synth... 239 6.5e-20 1
UNIPROTKB|E1BGZ1 - symbol:DUS3L "Uncharacterized protein"... 259 8.0e-20 1
UNIPROTKB|Q487W0 - symbol:CPS_0906 "tRNA-dihydrouridine s... 236 1.4e-19 1
TIGR_CMR|CPS_0906 - symbol:CPS_0906 "NifR3/Smm1 family pr... 236 1.4e-19 1
UNIPROTKB|Q96G46 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 256 1.9e-19 1
UNIPROTKB|F1SBU5 - symbol:LOC100513458 "Uncharacterized p... 249 1.4e-18 1
ZFIN|ZDB-GENE-040426-1260 - symbol:dus3l "dihydrouridine ... 248 1.8e-18 1
UNIPROTKB|E7EUN9 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 208 2.5e-18 2
UNIPROTKB|F8WEL2 - symbol:DUS4L "tRNA-dihydrouridine(20a/... 224 3.3e-18 1
UNIPROTKB|F1PS34 - symbol:LOC100856098 "Uncharacterized p... 244 5.3e-18 1
CGD|CAL0003882 - symbol:SMM1 species:5476 "Candida albica... 186 5.4e-18 2
UNIPROTKB|F1NGP4 - symbol:DUS3L "Uncharacterized protein"... 243 6.6e-18 1
UNIPROTKB|Q8EFG7 - symbol:dusC "tRNA-dihydrouridine synth... 227 1.1e-17 1
TIGR_CMR|SO_2006 - symbol:SO_2006 "NifR3/Smm1 family prot... 227 1.1e-17 1
MGI|MGI:2147092 - symbol:Dus3l "dihydrouridine synthase 3... 239 2.0e-17 1
DICTYBASE|DDB_G0292686 - symbol:dus3l "tRNA-dihydrouridin... 239 2.2e-17 1
RGD|1563228 - symbol:Dus3l "dihydrouridine synthase 3-lik... 235 6.0e-17 1
FB|FBgn0032819 - symbol:CG10463 species:7227 "Drosophila ... 233 9.1e-17 1
UNIPROTKB|O53835 - symbol:dus "Probable tRNA-dihydrouridi... 227 1.2e-16 1
UNIPROTKB|P33371 - symbol:dusC "tRNA-dihydrouridine synth... 218 3.0e-16 1
UNIPROTKB|Q83D40 - symbol:CBU_0904 "tRNA-dihydrouridine s... 213 3.7e-15 1
TIGR_CMR|CBU_0904 - symbol:CBU_0904 "TIM-barrel protein, ... 213 3.7e-15 1
POMBASE|SPBC1709.06 - symbol:dus2 "tRNA dihydrouridine sy... 186 4.3e-15 2
UNIPROTKB|Q607T6 - symbol:MCA1669 "tRNA-dihydrouridine sy... 204 4.8e-14 1
DICTYBASE|DDB_G0277081 - symbol:DDB_G0277081 "tRNA-dihydr... 202 1.1e-13 1
UNIPROTKB|Q9KT00 - symbol:dusC "tRNA-dihydrouridine synth... 195 3.4e-13 1
TIGR_CMR|VC_1105 - symbol:VC_1105 "conserved hypothetical... 195 3.4e-13 1
UNIPROTKB|Q9KUX9 - symbol:dusA "tRNA-dihydrouridine synth... 194 4.8e-13 1
TIGR_CMR|VC_0379 - symbol:VC_0379 "TIM-barrel protein, yj... 194 4.8e-13 1
WARNING: Descriptions of 26 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2155528 [details] [associations]
symbol:AT5G67220 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:CP002688 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AB020742
HOGENOM:HOG000203649 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 UniGene:At.66656 UniGene:At.9615 EMBL:AY049299
EMBL:AY102157 IPI:IPI00528780 RefSeq:NP_201523.1
ProteinModelPortal:Q9FH91 SMR:Q9FH91 STRING:Q9FH91 PRIDE:Q9FH91
EnsemblPlants:AT5G67220.1 GeneID:836857 KEGG:ath:AT5G67220
TAIR:At5g67220 InParanoid:Q9FH91 OMA:VERAWAH PhylomeDB:Q9FH91
ProtClustDB:CLSN2686916 Genevestigator:Q9FH91 Uniprot:Q9FH91
Length = 423
Score = 1556 (552.8 bits), Expect = 9.6e-160, P = 9.6e-160
Identities = 292/352 (82%), Positives = 317/352 (90%)
Query: 72 TASSSLPSPRGYLSGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAY 131
TA +SL SP LS + R ERAWAHW KLGRPK IVAPMVDNSELPFR+LC++YGA+AAY
Sbjct: 57 TAPASLGSPSRVLSIDTRVERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAY 116
Query: 132 TPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLG 191
TPMLHSRIFTE+EKYRN+EF TCKEDRPLFVQFCANDP+ LL AA+RVEPYCDYVDINLG
Sbjct: 117 TPMLHSRIFTETEKYRNQEFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLG 176
Query: 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 251
CPQRIARRGNYGAFLMDNLPLVKSLVEKLA NLNVPVSCKIR+FPNL+DT+KYAKMLEDA
Sbjct: 177 CPQRIARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDA 236
Query: 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311
GCSLLAVHGRTRDEKDGKKFRADW+AIK VKNA+RIPVLANGNVR +EDV C++ETG E
Sbjct: 237 GCSLLAVHGRTRDEKDGKKFRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVE 296
Query: 312 GVLSAESLLENPALFAGFRTAEWIVGSEEIS-KDGNLDQADLLVEYLKLCEKYPVPWRMI 370
GVLSAE+LLENPA FAGFRTAEW +EE DG LDQ DL+VEYLKLCEK+PVPWRMI
Sbjct: 297 GVLSAETLLENPAAFAGFRTAEWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMI 356
Query: 371 RSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKK 422
RSHVHK+LGEWFRI P VRE LNAQN LTFEFLY LVD+LRELG R+PLYKK
Sbjct: 357 RSHVHKMLGEWFRIHPQVREQLNAQNILTFEFLYGLVDQLRELGGRVPLYKK 408
>ZFIN|ZDB-GENE-030131-1435 [details] [associations]
symbol:dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
ZFIN:ZDB-GENE-030131-1435 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:BX897685 IPI:IPI00481340
ProteinModelPortal:F1QQD1 Ensembl:ENSDART00000127028
ArrayExpress:F1QQD1 Bgee:F1QQD1 Uniprot:F1QQD1
Length = 511
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 149/326 (45%), Positives = 201/326 (61%)
Query: 76 SLPSPRGYLSGEARAERAWAHWTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM 134
SL P+ +G + W + L + +VAPMVD SEL +R+L RR+GAE YTPM
Sbjct: 22 SLAVPQA-TAGSMTKPLGFEFWRRTLKGARFVVAPMVDQSELAWRLLSRRHGAELCYTPM 80
Query: 135 LHSRIFTESEKYRNEEFAT--CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGC 192
LH+++F YR E + +EDRPL QFCANDPE+ + AA + YCD +D+NLGC
Sbjct: 81 LHAQVFVRDANYRRENLYSEVNQEDRPLITQFCANDPEVFIQAALLAQDYCDAIDLNLGC 140
Query: 193 PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 252
PQ IA+RG+YG FL D L++ +++ L+VP++CKIRVFP ++ T+KYAKMLE AG
Sbjct: 141 PQMIAKRGHYGVFLQDEWDLLEKMIKLANEKLSVPITCKIRVFPEIEKTVKYAKMLEKAG 200
Query: 253 CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312
C LL VHGRT+D+K A W IKAV+ A+ IPV ANGN++H+ DV C+EETG +G
Sbjct: 201 CQLLTVHGRTKDQKGALTGIASWKHIKAVREAVNIPVFANGNIQHLSDVHHCMEETGVQG 260
Query: 313 VLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY-PVPWRMIR 371
V+SAE L NPALF G W ++ EYL + EK+ P +R
Sbjct: 261 VMSAEGNLHNPALFEGRSPPVW----------------EMAEEYLDIVEKHSPCSLSFVR 304
Query: 372 SHVHKLLGEWFRIQPGVREDL-NAQN 396
+H+ KL +I +REDL A+N
Sbjct: 305 AHIFKLWHHTLQIHQDLREDLAKAKN 330
>FB|FBgn0031238 [details] [associations]
symbol:CG3645 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
KO:K05542 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AY051946 EMBL:BT124833
RefSeq:NP_608507.1 RefSeq:NP_722619.1 UniGene:Dm.4432 SMR:Q9VPM1
IntAct:Q9VPM1 MINT:MINT-325917 STRING:Q9VPM1
EnsemblMetazoa:FBtr0078140 EnsemblMetazoa:FBtr0078141 GeneID:33190
KEGG:dme:Dmel_CG3645 UCSC:CG3645-RA FlyBase:FBgn0031238
InParanoid:Q9VPM1 OrthoDB:EOG41VHJ8 GenomeRNAi:33190 NextBio:782335
Uniprot:Q9VPM1
Length = 505
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 146/303 (48%), Positives = 193/303 (63%)
Query: 98 TKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED 157
+ LG P+ +VAPMVD SEL +RMLCRRYGAE Y+PM H+ +F KYR + TC ED
Sbjct: 23 SSLGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPED 82
Query: 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
RPL +QFC ND + +L+AA + +CD VDINLGCPQ IA+RG+YG+FL D L+ +V
Sbjct: 83 RPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV 142
Query: 218 EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
L L VPV+CKIR+F +L+ TI+YAKMLE AGC LL VHGRTR++K A+WN
Sbjct: 143 STLHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNY 202
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 337
IK V+ ++IP+LANGN+ ++DV +CL ETG +GV+SAE L NPA+F G W
Sbjct: 203 IKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGVSPPVW--- 259
Query: 338 SEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG--VREDLNAQ 395
+ EYL+L + +P P IR H+ KL I+ +R+ L
Sbjct: 260 -------------QMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELRQYLATA 306
Query: 396 NRL 398
N+L
Sbjct: 307 NQL 309
>UNIPROTKB|E2R9L8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 CTD:64118 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 RefSeq:XP_848227.1 ProteinModelPortal:E2R9L8
Ensembl:ENSCAFT00000009615 GeneID:475927 KEGG:cfa:475927
NextBio:20851671 Uniprot:E2R9L8
Length = 475
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 140/299 (46%), Positives = 194/299 (64%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>UNIPROTKB|J9NYR0 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 Ensembl:ENSCAFT00000045880 Uniprot:J9NYR0
Length = 584
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 140/299 (46%), Positives = 194/299 (64%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>RGD|708389 [details] [associations]
symbol:Pp3111 "PP3111 protein" species:10116 "Rattus norvegicus"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 RGD:708389 Gene3D:3.20.20.70
GO:GO:0050660 HOVERGEN:HBG061241 KO:K05542 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:AF508021 EMBL:AY327509
EMBL:AY327510 IPI:IPI00203718 RefSeq:NP_742015.1 UniGene:Rn.179335
ProteinModelPortal:Q8K582 PRIDE:Q8K582 GeneID:246185
KEGG:rno:246185 CTD:246185 NextBio:623466 Genevestigator:Q8K582
Uniprot:Q8K582
Length = 438
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 141/299 (47%), Positives = 195/299 (65%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--T 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W + AD EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W-------------ELAD---EYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>MGI|MGI:1915980 [details] [associations]
symbol:Dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
MGI:MGI:1915980 Gene3D:3.20.20.70 GO:GO:0050660 CTD:64118
eggNOG:COG0042 HOVERGEN:HBG061241 KO:K05542 OrthoDB:EOG4SN1NJ
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AK004041
EMBL:AK088243 EMBL:BC019480 IPI:IPI00224714 RefSeq:NP_081100.2
UniGene:Mm.180622 ProteinModelPortal:Q8C2P3 SMR:Q8C2P3
STRING:Q8C2P3 PRIDE:Q8C2P3 Ensembl:ENSMUST00000167023 GeneID:68730
KEGG:mmu:68730 UCSC:uc007mur.1 GeneTree:ENSGT00550000075089
InParanoid:Q8C2P3 NextBio:327790 Bgee:Q8C2P3 CleanEx:MM_DUS1L
Genevestigator:Q8C2P3 GermOnline:ENSMUSG00000025155 Uniprot:Q8C2P3
Length = 475
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 139/299 (46%), Positives = 195/299 (65%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--T 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>DICTYBASE|DDB_G0278803 [details] [associations]
symbol:dus1l "tRNA-dihydrouridine synthase 1-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0278803 GO:GO:0005634 Gene3D:3.20.20.70
GenomeReviews:CM000152_GR GO:GO:0050660 EMBL:AAFI02000024
eggNOG:COG0042 KO:K05542 GO:GO:0017150 PANTHER:PTHR11082
RefSeq:XP_641974.1 ProteinModelPortal:Q54XQ6 STRING:Q54XQ6
EnsemblProtists:DDB0238071 GeneID:8621706 KEGG:ddi:DDB_G0278803
OMA:QIARRGN Uniprot:Q54XQ6
Length = 435
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 135/295 (45%), Positives = 196/295 (66%)
Query: 100 LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRP 159
L PK VAPMVD++ L FRMLCR+YGA+ YTPM HS+ F + YR + ++TC EDRP
Sbjct: 49 LKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDYWSTCPEDRP 108
Query: 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219
L VQFC N+PE ++ AA+ +E +CD +D+NLGCPQ+IARRGNYG+FL+D ++ +V++
Sbjct: 109 LVVQFCGNEPEWVVKAAKYIEDHCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQE 168
Query: 220 LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279
L ++ VP+ CKIR+ PNL DTIK A L++AGC LL +HGRT+++K A+W AI+
Sbjct: 169 LHKHIKVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKGHNSGIANWKAIR 228
Query: 280 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSE 339
++ L IPV+ANG+V ED+ +CLEETG +GV+SAE +L NP+ F+G + +
Sbjct: 229 TIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSFFSGLKVPIY----- 283
Query: 340 EISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNA 394
++++ EY+ E Y + RSH+ K+L E + +RE + A
Sbjct: 284 QVAR-----------EYIDFTEIYKTSIHVTRSHIFKMLKEKLDVYSDLRETMGA 327
>UNIPROTKB|J3QLE4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000582529 Uniprot:J3QLE4
Length = 309
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 140/299 (46%), Positives = 193/299 (64%)
Query: 97 WTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ R + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>UNIPROTKB|Q6P1R4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 EMBL:BC017081
EMBL:BC062566 EMBL:BC064918 IPI:IPI00335251 RefSeq:NP_071439.3
UniGene:Hs.514599 UniGene:Hs.741994 ProteinModelPortal:Q6P1R4
SMR:Q6P1R4 STRING:Q6P1R4 DMDM:74749069 PaxDb:Q6P1R4 PRIDE:Q6P1R4
DNASU:64118 Ensembl:ENST00000306796 Ensembl:ENST00000354321
GeneID:64118 KEGG:hsa:64118 UCSC:uc002kdq.3 CTD:64118
GeneCards:GC17M080015 H-InvDB:HIX0039074 HGNC:HGNC:30086
HPA:HPA023384 neXtProt:NX_Q6P1R4 PharmGKB:PA142671936
eggNOG:COG0042 HOGENOM:HOG000203649 HOVERGEN:HBG061241
InParanoid:Q6P1R4 KO:K05542 OMA:WEMAEEY OrthoDB:EOG4SN1NJ
GenomeRNAi:64118 NextBio:65992 ArrayExpress:Q6P1R4 Bgee:Q6P1R4
CleanEx:HS_DUS1L Genevestigator:Q6P1R4 GermOnline:ENSG00000169718
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 Uniprot:Q6P1R4
Length = 473
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 140/299 (46%), Positives = 193/299 (64%)
Query: 97 WTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ R + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>UNIPROTKB|E1BWI8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AADN02029975
IPI:IPI00820914 ProteinModelPortal:E1BWI8
Ensembl:ENSGALT00000038896 NextBio:20820685 Uniprot:E1BWI8
Length = 486
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 139/304 (45%), Positives = 192/304 (63%)
Query: 92 RAWAHWTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE 150
R A W + R +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 5 RGEAFWRETLRGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYRREN 64
Query: 151 F--ATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL +
Sbjct: 65 LYGEACPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQE 124
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
L++ ++ L+VP++CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K
Sbjct: 125 EWDLLQRMILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 269 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328
A W I+AV+ A+ IPV ANGN++ + DV++C+ +TG GV+SAE L NPALF G
Sbjct: 185 LAGVASWEHIQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEG 244
Query: 329 FRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGV 388
W ++ EYL++ +KYP P +R+H+ KL ++ +
Sbjct: 245 RNPLVW----------------EMAEEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQL 288
Query: 389 REDL 392
RE+L
Sbjct: 289 REEL 292
>UNIPROTKB|E1C6D2 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AADN02029975 IPI:IPI00599742
ProteinModelPortal:E1C6D2 Ensembl:ENSGALT00000004402 Uniprot:E1C6D2
Length = 478
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 139/304 (45%), Positives = 192/304 (63%)
Query: 92 RAWAHWTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE 150
R A W + R +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 5 RGEAFWRETLRGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYRREN 64
Query: 151 F--ATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL +
Sbjct: 65 LYGEACPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQE 124
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
L++ ++ L+VP++CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K
Sbjct: 125 EWDLLQRMILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGP 184
Query: 269 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328
A W I+AV+ A+ IPV ANGN++ + DV++C+ +TG GV+SAE L NPALF G
Sbjct: 185 LAGVASWEHIQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEG 244
Query: 329 FRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGV 388
W ++ EYL++ +KYP P +R+H+ KL ++ +
Sbjct: 245 RNPLVW----------------EMAEEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQL 288
Query: 389 REDL 392
RE+L
Sbjct: 289 REEL 292
>UNIPROTKB|G3N340 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
Ensembl:ENSBTAT00000063588 Uniprot:G3N340
Length = 475
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 137/299 (45%), Positives = 191/299 (63%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--T 153
W++ LG + +VAPMVD SEL +R+L RR+GA YTPMLH+++F YR E
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ + + + PV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMRTWGHMVVGCPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVTIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>POMBASE|SPBC36B7.04 [details] [associations]
symbol:SPBC36B7.04 "tRNA dihydrouridine synthase Dus1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006400 "tRNA modification" evidence=ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISO]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PomBase:SPBC36B7.04 GO:GO:0005739
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:NP_595986.1
ProteinModelPortal:Q9HGN6 STRING:Q9HGN6 EnsemblFungi:SPBC36B7.04.1
GeneID:2541048 KEGG:spo:SPBC36B7.04 OMA:RCQPYFR OrthoDB:EOG480N5B
NextBio:20802162 Uniprot:Q9HGN6
Length = 399
Score = 667 (239.9 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 140/305 (45%), Positives = 195/305 (63%)
Query: 97 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAT--C 154
+ K+GRPK I+APMVD SELP+R+L RR GA+ Y+PM HSR+F ESE YRN+ F+T
Sbjct: 12 YNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTI 71
Query: 155 KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 214
E+RPL +QFC NDPEI+L AA+ PYCD VD+NLGCPQ IA++G YG+FL +N L++
Sbjct: 72 PEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131
Query: 215 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
S++ KL L++PV+ KIR+FP+ Q T+ YAKM+ AG S+LAVHGR R++K AD
Sbjct: 132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIAD 191
Query: 275 WNAIKAV-KNALRIPVL-ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332
W I+ + KN VL ANGN+ H +D+ +C++ TG +GVLSAE L NP +F
Sbjct: 192 WEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLP---- 247
Query: 333 EWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVP-----WRMIRSHVHKLLGEWFRIQPG 387
S ++ +D D+ EYL + ++ + I+ H+ KL+ I
Sbjct: 248 ---PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIHTD 302
Query: 388 VREDL 392
+R L
Sbjct: 303 IRSKL 307
Score = 37 (18.1 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 381 WFRIQPGVR 389
W+R+QP +R
Sbjct: 360 WWRVQPYIR 368
>UNIPROTKB|J3QQZ0 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578907 Uniprot:J3QQZ0
Length = 301
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 117/223 (52%), Positives = 159/223 (71%)
Query: 97 WTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ R + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SA
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSA 232
>UNIPROTKB|E1BH75 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
IPI:IPI00906369 Ensembl:ENSBTAT00000057257 OMA:RMSILAW
Uniprot:E1BH75
Length = 270
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 116/231 (50%), Positives = 160/231 (69%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--T 153
W++ LG + +VAPMVD SEL +R+L RR+GA YTPMLH+++F YR E
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ + + PV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMSILAWTTSSXPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SA + +PA
Sbjct: 190 SWEHIKAVRKAVTIPVFANGNIQCLRDVERCIQDTGVQGVMSAGEAVPSPA 240
>SGD|S000004545 [details] [associations]
symbol:DUS1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IMP;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 SGD:S000004545
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006946
EMBL:Z46373 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 PANTHER:PTHR11082 GeneTree:ENSGT00550000075089
OMA:RCQPYFR OrthoDB:EOG480N5B PIR:S48817 RefSeq:NP_013631.1
ProteinModelPortal:P53759 SMR:P53759 IntAct:P53759
MINT:MINT-4083769 STRING:P53759 PaxDb:P53759 PeptideAtlas:P53759
EnsemblFungi:YML080W GeneID:854895 KEGG:sce:YML080W CYGD:YML080w
BioCyc:MetaCyc:MONOMER-16676 NextBio:977861 Genevestigator:P53759
GermOnline:YML080W Uniprot:P53759
Length = 423
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 135/313 (43%), Positives = 194/313 (61%)
Query: 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATC---K 155
K+GRP IVAPMVD SEL +R+L RRYGA AYTPMLH+++F S+KYR + +++
Sbjct: 25 KIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSS 84
Query: 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 215
DRPL VQFCANDPE LL AA+ VE CD VD+NLGCPQ IA++G+YG+FLM+ L+ +
Sbjct: 85 VDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHN 144
Query: 216 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 275
L+ L NL VPV+ KIR+F + + ++ YAKM+ DAG L VHGR R++K K A+W
Sbjct: 145 LINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANW 204
Query: 276 NAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
IK +++ L ANGN+ + ED+ +C+E G + V+SAE L NP +F
Sbjct: 205 ETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFN------ 258
Query: 334 WIVGSEEISKDGNLDQADLLV-EYLKL---CEKYPVPWRMIRSHVHKLLGEWFRIQPGVR 389
VG + +K+ + D ++ EY ++ C++ ++SH K+L + +R
Sbjct: 259 --VGQTK-NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIR 315
Query: 390 EDLNAQN-RLTFE 401
L N + T+E
Sbjct: 316 STLATMNAKATWE 328
>CGD|CAL0004455 [details] [associations]
symbol:orf19.1404 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0004455 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_714575.1
RefSeq:XP_714669.1 ProteinModelPortal:Q59YC2 STRING:Q59YC2
GeneID:3643687 GeneID:3643817 KEGG:cal:CaO19.1404
KEGG:cal:CaO19.8982 Uniprot:Q59YC2
Length = 467
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 133/311 (42%), Positives = 191/311 (61%)
Query: 97 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKE 156
+ +G+PK IVAPMVD SEL +R+L RRYGA+ YTPM H+++F EKYRN + T +
Sbjct: 52 YNAIGQPKTIVAPMVDQSELAWRILSRRYGAQLCYTPMFHAKLFATQEKYRNSMWTTNLD 111
Query: 157 -----DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP 211
DRPL VQFCANDP+ LL AA+ +E CD +D+NLGCPQ IAR+G YGAFLMD+
Sbjct: 112 GNKDLDRPLVVQFCANDPDYLLQAAKLIENECDAIDLNLGCPQGIARKGKYGAFLMDDWD 171
Query: 212 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 271
LV L++ L NL++PV+ KIR++ + + ++KYAKM+ DAG + VHGRTR+ K
Sbjct: 172 LVYKLIKNLHDNLSIPVTAKIRIYDDYEKSLKYAKMVLDAGAQFITVHGRTREMKGQATG 231
Query: 272 RADWNAIKAVKNAL-RIPVL-ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
A+W +K +++ L + V +NGN+ + D+Q+C ET C+ V+SAE L NP +F
Sbjct: 232 LANWKILKYLRDNLPQDQVFFSNGNILYPSDIQRCQSETACDAVMSAEGNLYNPGVF--- 288
Query: 330 RTAEWIVGSEEISKDGNLDQAD-LLVEYLKLC-EKYP--VPWRMIRSHVHKLLGEWFRIQ 385
W + +KD + D +L EY ++ E Y ++SH KLL + +
Sbjct: 289 ----WTLDD---NKDKQFPRVDKILREYFEIVKENYDSLASRHAMKSHFFKLLHAFLEVH 341
Query: 386 PGVREDLNAQN 396
+R + N
Sbjct: 342 KELRPIIGKAN 352
>WB|WBGene00009452 [details] [associations]
symbol:F36A2.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:Z81077 PIR:T21830
RefSeq:NP_492379.1 UniGene:Cel.26704 ProteinModelPortal:Q9XVN8
SMR:Q9XVN8 STRING:Q9XVN8 PaxDb:Q9XVN8 EnsemblMetazoa:F36A2.2
GeneID:185334 KEGG:cel:CELE_F36A2.2 UCSC:F36A2.2 CTD:185334
WormBase:F36A2.2 InParanoid:Q9XVN8 OMA:YLFASQP NextBio:927896
Uniprot:Q9XVN8
Length = 527
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 121/289 (41%), Positives = 172/289 (59%)
Query: 92 RAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF 151
R W + R ++APMVD SEL FRM R+YGA+ +TPM+H+ +F YR
Sbjct: 62 RFWKETLENQRITKVLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSL 121
Query: 152 ATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP 211
A K DRPL VQFCAN + L A R VE CD VD+NLGCPQ +A+RG YG++L D +
Sbjct: 122 ALVKADRPLVVQFCANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVD 181
Query: 212 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 271
L+ +V + +P+SCKIRV + Q T++YAK L DAG ++L VHGRTRD K +
Sbjct: 182 LICEMVSAVRDYCRLPISCKIRVRDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGAETG 241
Query: 272 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF--A 327
ADW+ I+ V A+ R+PV+ANGN++ DV++C++ TG ++SAE LL NP +F A
Sbjct: 242 LADWSRIRDVVEAVGSRVPVMANGNIQFPGDVERCMQATGAVAIMSAEGLLYNPLIFDDA 301
Query: 328 GFRTAEWIVGSE--EISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHV 374
W + +E E +K N + + ++C + + +R V
Sbjct: 302 NAHVDTWKIAAEYLEYAKKFNAGTSAIRAHVFRICHHSLLEYEDLRMRV 350
>UNIPROTKB|G4MUR1 [details] [associations]
symbol:MGG_08825 "tRNA-dihydrouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CM001232 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_003713841.1
ProteinModelPortal:G4MUR1 EnsemblFungi:MGG_08825T0 GeneID:2679811
KEGG:mgr:MGG_08825 Uniprot:G4MUR1
Length = 614
Score = 455 (165.2 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 87/173 (50%), Positives = 119/173 (68%)
Query: 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 216
DRPLFVQFCANDP LL AA+ V PYCD VD+NLGCPQ IAR+G+YGAFL ++ L+ L
Sbjct: 117 DRPLFVQFCANDPSALLEAAKHVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDQELIHKL 176
Query: 217 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 276
+ +L L++PV+ KIR+ + T+ YA+ + DAG S+L VHGR R++K ADW+
Sbjct: 177 IRQLHDGLSIPVTAKIRILDTPEATLAYARNVLDAGASILTVHGRRREQKGHLTGVADWS 236
Query: 277 AIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
AI+ ++ L + ANGN+ D+++CLE TG + V+SAE L +P LFA
Sbjct: 237 AIRHLRENLPPETVIFANGNILQRGDLERCLEATGADAVMSAEGNLSDPTLFA 289
Score = 152 (58.6 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 35/93 (37%), Positives = 50/93 (53%)
Query: 73 ASSSLPSP--RGYLSGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEA- 129
A++S+P G SG A + +G PK +VAPMVD SE +RML R + E+
Sbjct: 6 AATSMPGSDTNGVTSGVKPKLHGRAFYESIGSPKFVVAPMVDQSEFAWRMLTRSFMPESQ 65
Query: 130 -----AYTPMLHSRIFTESEKYRNEEFATCKED 157
YTPM H+R+F E+ YR+ F ++D
Sbjct: 66 RSTVLGYTPMFHARLFGENPSYRDSHFQAIRKD 98
>ASPGD|ASPL0000054271 [details] [associations]
symbol:AN0956 species:162425 "Emericella nidulans"
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 EMBL:BN001308
GO:GO:0050660 EMBL:AACD01000014 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
OrthoDB:EOG480N5B RefSeq:XP_658560.1 ProteinModelPortal:Q5BES4
STRING:Q5BES4 EnsemblFungi:CADANIAT00001695 GeneID:2876733
KEGG:ani:AN0956.2 OMA:GHNTGLA Uniprot:Q5BES4
Length = 563
Score = 468 (169.8 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 88/173 (50%), Positives = 123/173 (71%)
Query: 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 216
DRPLFVQFCANDP+ NAAR V PYCD VD+NLGCPQ IARRG+YGAFL ++ L+ L
Sbjct: 122 DRPLFVQFCANDPDDFFNAARHVAPYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKL 181
Query: 217 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 276
+ KL + L VPV+ K R+ + + T++YAKM+ AG S++ +HGRTR++K ADW+
Sbjct: 182 INKLHMELEVPVTAKFRIQESKEKTLEYAKMILSAGASIITLHGRTREQKGHNTGLADWS 241
Query: 277 AIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
I+ +++ L + ANGN + +D+ +CLE TG +GV+SAE L +P++FA
Sbjct: 242 YIRYLRDNLPPDTVIFANGNNLNHDDLARCLEATGADGVMSAEGNLSDPSIFA 294
Score = 123 (48.4 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGA--EA----AYTPMLHSRIFTESEKYRN 148
A + +G PK IVAPMVD SE +RML R + E+ AY+PM H+R+F E YR
Sbjct: 34 AFYESIGSPKYIVAPMVDRSEFAWRMLTRSFMTPEESKSVLAYSPMYHARLFEEHAGYRA 93
Query: 149 EEF 151
+ F
Sbjct: 94 KAF 96
>ZFIN|ZDB-GENE-040801-233 [details] [associations]
symbol:dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
ZFIN:ZDB-GENE-040801-233 Gene3D:3.20.20.70 GO:GO:0050660
HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
CTD:11062 HOVERGEN:HBG053313 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:BX072538 IPI:IPI00487005
RefSeq:NP_001003490.2 UniGene:Dr.89736 Ensembl:ENSDART00000130623
GeneID:445096 KEGG:dre:445096 InParanoid:Q5RIX6 NextBio:20831860
Uniprot:Q5RIX6
Length = 307
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 100/231 (43%), Positives = 143/231 (61%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
+P + APMV S+L FR L R+Y + +TPM+ + F S K R+ EF T K DRPL
Sbjct: 15 KPVRVCAPMVRYSKLAFRTLVRKYDCDVCFTPMIIAADFMRSAKARDSEFTTNKNDRPLI 74
Query: 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 221
VQF A D + L +AA V P+ D VD+N GCPQR A YGA L++ LVK +V +
Sbjct: 75 VQFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDMVRHVR 134
Query: 222 LNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
++ P VS KIR+ +++ T+ + +E AG S + VHGRT E+ ++ I
Sbjct: 135 NQIDNPNYAVSIKIRIHKDVRQTVDLCQKVEAAGVSYITVHGRTAIERHQP---VHYDTI 191
Query: 279 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
K +K++L IPV+ANG+++ M+DV+ E TG +GV+SA LL NPA+F+GF
Sbjct: 192 KTIKDSLSIPVIANGDIKSMQDVEAVCELTGVDGVMSARGLLSNPAMFSGF 242
>DICTYBASE|DDB_G0291360 [details] [associations]
symbol:dus4l "tRNA-dihydrouridine synthase 4-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 dictyBase:DDB_G0291360
GO:GO:0005739 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY RefSeq:XP_635163.1
ProteinModelPortal:Q54ES7 STRING:Q54ES7 EnsemblProtists:DDB0238074
GeneID:8628109 KEGG:ddi:DDB_G0291360 ProtClustDB:CLSZ2429554
Uniprot:Q54ES7
Length = 344
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 97/224 (43%), Positives = 138/224 (61%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
I APMV S LPFRML +++G + YTPM+ + F SE R+ +F K D PL VQF
Sbjct: 58 IQAPMVRFSRLPFRMLVKKWGCDITYTPMIMAAEFNRSEAARDSDFTINKLDEPLIVQFG 117
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225
N+ E L++AA +V+ YC +DIN GCPQR + +GA L+ + + +V+++ +
Sbjct: 118 VNNAEELVSAAEKVKDYCQGIDINCGCPQRWVMKEGFGANLLLHPERIYDMVKQINNRVP 177
Query: 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 285
+P+S KIRV +L+DTI+ AK E G S + VHGRT K D++AIK VK+ +
Sbjct: 178 IPISIKIRVQSDLKDTIELAKRAERIGVSWITVHGRTSAMKSSHP--VDYDAIKLVKDNV 235
Query: 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
+PV ANG+V + + E+TG GV+SA LL NPALF G+
Sbjct: 236 TLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQGY 279
>UNIPROTKB|J3QKP9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578176 Uniprot:J3QKP9
Length = 247
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 101/247 (40%), Positives = 149/247 (60%)
Query: 97 WTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCK 155
W++ R + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKEN----- 64
Query: 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 215
L+ + C D +++ +P +V L +A+ +Y + NL +
Sbjct: 65 ----LYCEVCPEDRPLIVQFCAN-DPEV-FVQAAL-----LAQ--DYCDAIDLNLGCPQM 111
Query: 216 LVEKLAL---NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 272
+ +++ L L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K
Sbjct: 112 IAKRVLLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGA 171
Query: 273 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332
A W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A
Sbjct: 172 ASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPA 231
Query: 333 EWIVGSE 339
W + E
Sbjct: 232 VWELAEE 238
>UNIPROTKB|F1NHN2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine synthase" species:9031
"Gallus gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 OMA:AGPMVRY GeneTree:ENSGT00550000074907
EMBL:AC147596 IPI:IPI00813011 Ensembl:ENSGALT00000039460
Uniprot:F1NHN2
Length = 307
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 96/234 (41%), Positives = 139/234 (59%)
Query: 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDR 158
+ G I APMV S+L FR L RRYG + YTPM+ + F S K R+ EF T + D
Sbjct: 11 RAGHVVKICAPMVRYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTTNRGDN 70
Query: 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 218
PL VQF A + ++L +AA V P+ D VD+N GCPQR A YGA L++ LV+ +V
Sbjct: 71 PLIVQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKPELVRDMVR 130
Query: 219 KLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 275
+ ++ P VS KIR+ +L+ T+ K E G S + VHGR +E+ +
Sbjct: 131 HVRNQIDNPRFSVSIKIRIHEDLKKTVDLCKKAEATGVSWITVHGRNIEERHQP---VHY 187
Query: 276 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
+AIK +K ++ IPV+ANG+++ ++D + TG +GV+ A LL NPA+FAG+
Sbjct: 188 DAIKVIKESIHIPVVANGDIKTLKDAENVHHLTGADGVMVARGLLANPAMFAGY 241
>UNIPROTKB|E2RRJ8 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AAEX03011212 RefSeq:XP_540383.2
Ensembl:ENSCAFT00000006298 GeneID:483264 KEGG:cfa:483264
Uniprot:E2RRJ8
Length = 317
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 97/227 (42%), Positives = 137/227 (60%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
+ APMV S+L FR L R+YG + YTPM+ + F S K R+ EF T + D PL VQF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYGCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225
AND +L +AAR V PY + +DIN GCPQR A YGA L++ LV+ +V+++ +
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 226 VP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282
P VS KIR+ +L TI + E G S + VHGRT +E+ + AIK +K
Sbjct: 150 NPRFSVSIKIRIHDDLTRTIDLCRKAEATGVSWITVHGRTVEERHQP---VHYEAIKIIK 206
Query: 283 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
+ IPV+ANG++R +++ + TG +GV+ A LL NPA+FAG+
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWHITGTDGVMVARGLLANPAMFAGY 253
>UNIPROTKB|O95620 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CH471070 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:U62767 EMBL:AK297195
EMBL:BC111774 IPI:IPI00021410 IPI:IPI00783809 RefSeq:NP_001257348.1
RefSeq:NP_853559.1 UniGene:Hs.97627 ProteinModelPortal:O95620
SMR:O95620 STRING:O95620 PaxDb:O95620 PRIDE:O95620
Ensembl:ENST00000265720 Ensembl:ENST00000402620 GeneID:11062
KEGG:hsa:11062 UCSC:uc003veh.3 CTD:11062 GeneCards:GC07P107203
HGNC:HGNC:21517 HPA:HPA044301 neXtProt:NX_O95620
PharmGKB:PA142671939 HOVERGEN:HBG053313 InParanoid:O95620 KO:K05545
OMA:AGPMVRY OrthoDB:EOG4ZCT4T PhylomeDB:O95620 GenomeRNAi:11062
NextBio:42037 ArrayExpress:O95620 Bgee:O95620 CleanEx:HS_DUS4L
Genevestigator:O95620 GermOnline:ENSG00000105865 Uniprot:O95620
Length = 317
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 94/227 (41%), Positives = 139/227 (61%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
+ APMV S+L FR L R+Y + YTPM+ + F +S K R+ EF T + D PL VQF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225
AND +L +AAR V PY + +DIN GCPQR A YGA L++ LV+ +V+++ +
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 226 VP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282
P VS KIR+ +L+ T+ + E G S + VHGRT +E+ +++IK +K
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQP---VHYDSIKIIK 206
Query: 283 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
+ IPV+ANG++R +++ + TG +GV+ A LL NPA+FAG+
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGY 253
>MGI|MGI:1919166 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 MGI:MGI:1919166 Gene3D:3.20.20.70
GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313
KO:K05545 OrthoDB:EOG4ZCT4T EMBL:AK010138 EMBL:BC109351
IPI:IPI00109359 RefSeq:NP_082278.1 UniGene:Mm.62979
ProteinModelPortal:Q32M08 SMR:Q32M08 STRING:Q32M08 PRIDE:Q32M08
Ensembl:ENSMUST00000020977 GeneID:71916 KEGG:mmu:71916
UCSC:uc007nhr.1 GeneTree:ENSGT00550000074907 InParanoid:Q32M08
NextBio:334944 Bgee:Q32M08 CleanEx:MM_DUS4L Genevestigator:Q32M08
GermOnline:ENSMUSG00000020648 Uniprot:Q32M08
Length = 324
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 94/227 (41%), Positives = 135/227 (59%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
+ APMV S+L FR L R+Y + YTPM+ + F S K R+ EF T + D PL VQF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225
AND +L +AA V PY + +DIN GCPQR A YGA L++ LV +V ++ +
Sbjct: 90 ANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRVE 149
Query: 226 VP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282
P VS KIR+ +L TI + E G S + VHGRT +E+ ++AIK +K
Sbjct: 150 SPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQP---VHYDAIKMIK 206
Query: 283 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
+ IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG+
Sbjct: 207 ENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
>RGD|1311445 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 RGD:1311445 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
IPI:IPI00914747 ProteinModelPortal:D4A3L7
Ensembl:ENSRNOT00000011068 UCSC:RGD:1311445 ArrayExpress:D4A3L7
Uniprot:D4A3L7
Length = 324
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 94/227 (41%), Positives = 135/227 (59%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
+ APMV S+L FR L R+Y + YTPM+ + F S K R+ EF T + D PL VQF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFA 89
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225
AND +L +AA V PY +DIN GCPQR A YGA L++ LV +V ++ +
Sbjct: 90 ANDARLLSDAALIVCPYASGIDINCGCPQRWAMADGYGACLINKPELVLDMVRQVRNRVE 149
Query: 226 VP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282
P VS KIR+ +L TI + +E G S + VHGRT +E+ ++AIK +K
Sbjct: 150 NPRFSVSIKIRIHDDLARTIDLCRKVEATGVSWITVHGRTVEERHQP---VHYDAIKMIK 206
Query: 283 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
+ IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG+
Sbjct: 207 ENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
>UNIPROTKB|D4A0T1 [details] [associations]
symbol:Dus4l "Protein Dus4l" species:10116 "Rattus
norvegicus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
RGD:1311445 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CH473947
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 IPI:IPI00951041
RefSeq:NP_001129275.1 UniGene:Rn.41975 Ensembl:ENSRNOT00000068419
GeneID:366593 KEGG:rno:366593 NextBio:689691 Uniprot:D4A0T1
Length = 321
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 94/227 (41%), Positives = 135/227 (59%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
+ APMV S+L FR L R+Y + YTPM+ + F S K R+ EF T + D PL VQF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFA 89
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225
AND +L +AA V PY +DIN GCPQR A YGA L++ LV +V ++ +
Sbjct: 90 ANDARLLSDAALIVCPYASGIDINCGCPQRWAMADGYGACLINKPELVLDMVRQVRNRVE 149
Query: 226 VP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282
P VS KIR+ +L TI + +E G S + VHGRT +E+ ++AIK +K
Sbjct: 150 NPRFSVSIKIRIHDDLARTIDLCRKVEATGVSWITVHGRTVEERHQP---VHYDAIKMIK 206
Query: 283 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
+ IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG+
Sbjct: 207 ENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
>WB|WBGene00016674 [details] [associations]
symbol:C45G9.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:FO080873 PIR:A88449
RefSeq:NP_498078.2 ProteinModelPortal:Q09504 SMR:Q09504
STRING:Q09504 EnsemblMetazoa:C45G9.2 GeneID:183479
KEGG:cel:CELE_C45G9.2 UCSC:C45G9.2 CTD:183479 WormBase:C45G9.2
InParanoid:Q09504 NextBio:921288 Uniprot:Q09504
Length = 284
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 98/303 (32%), Positives = 158/303 (52%)
Query: 110 MVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDP 169
MV S+L FR L R Y + +TPM++++ F ESEK R+ E + C+ D PL VQF +DP
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDP 60
Query: 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-- 227
+L AA V VD+N GCP+ R +G+ L+ L+ +V + + P
Sbjct: 61 FVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 228 -VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 286
VS KIR+ +++ T+ + E AG + L VHGRT ++ D A++ VK+++
Sbjct: 121 SVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEP---IDIQALRIVKDSVS 177
Query: 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGN 346
+P++ANG + E+ E+TG +G+++A LL+NPALFAG
Sbjct: 178 VPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTP------------- 224
Query: 347 LDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG-VREDLNAQNRLTFEFLYN 405
+D + +++L +Y + W + H+ +L F Q V +LN + + FL N
Sbjct: 225 ---SDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQRRVFNELNGRLAID-HFLNN 280
Query: 406 LVD 408
L+D
Sbjct: 281 LLD 283
>FB|FBgn0032750 [details] [associations]
symbol:CG10495 species:7227 "Drosophila melanogaster"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AY069347 RefSeq:NP_609939.1
UniGene:Dm.465 SMR:Q9VJ06 STRING:Q9VJ06 EnsemblMetazoa:FBtr0081150
GeneID:35179 KEGG:dme:Dmel_CG10495 UCSC:CG10495-RA
FlyBase:FBgn0032750 InParanoid:Q9VJ06 OrthoDB:EOG4X3FH5
GenomeRNAi:35179 NextBio:792243 Uniprot:Q9VJ06
Length = 396
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 92/226 (40%), Positives = 129/226 (57%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
+ APMV S+L FR L R G + A+TPM+ S SEK R EF+T +D+PL QF
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFA 85
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL- 224
A DP + +A+ + PY D +D+N GCPQ A YG ++ LV +V+++ L
Sbjct: 86 AKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLP 145
Query: 225 -NVPVSCKIRVF---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
+ VS K+R+ +LQ TI A+ LE AG + L +HGRT +K K D A+
Sbjct: 146 GDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQKHSKD-TLDIPAMSQ 204
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
V+ +L+IP++ NGNV D E+TG GV++A LL NPALF
Sbjct: 205 VRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPALF 250
>SGD|S000004397 [details] [associations]
symbol:DUS4 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=ISS;IMP] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000004397 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006945
EMBL:U19729 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 OrthoDB:EOG4PZNGJ EMBL:AY558586
PIR:S55961 RefSeq:NP_013509.1 ProteinModelPortal:Q06063 SMR:Q06063
IntAct:Q06063 STRING:Q06063 PaxDb:Q06063 EnsemblFungi:YLR405W
GeneID:851121 KEGG:sce:YLR405W CYGD:YLR405w
BioCyc:MetaCyc:MONOMER-16679 NextBio:967845 Genevestigator:Q06063
GermOnline:YLR405W Uniprot:Q06063
Length = 367
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 90/239 (37%), Positives = 131/239 (54%)
Query: 101 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPL 160
GRP I PMV S+LPFR LCR Y + Y+PM+ +R + +E R + +T ED PL
Sbjct: 37 GRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPL 96
Query: 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE-- 218
VQ N+ LL V PYCD + IN GCP + R G L+ N L+ S+V
Sbjct: 97 IVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYNSDLLCSMVHAV 156
Query: 219 KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
K + + KIR+ L +T++ + L DAG + +HGRTR + + A+ +AI
Sbjct: 157 KDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQP--ANLDAI 214
Query: 279 K-AVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 334
K ++N +PV+ANG+ + D+++ + TG GV++ LL NPALFAG+ T W
Sbjct: 215 KYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYTTCPW 273
>POMBASE|SPCC777.15 [details] [associations]
symbol:SPCC777.15 "tRNA dihydrouridine synthase Dus4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISO] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
PomBase:SPCC777.15 GO:GO:0005739 EMBL:CU329672
GenomeReviews:CU329672_GR Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 PANTHER:PTHR11082
KO:K05545 OMA:AGPMVRY PIR:T11721 RefSeq:NP_588262.1
ProteinModelPortal:O74553 STRING:O74553 EnsemblFungi:SPCC777.15.1
GeneID:2538996 KEGG:spo:SPCC777.15 OrthoDB:EOG4PZNGJ
NextBio:20800171 Uniprot:O74553
Length = 326
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 93/235 (39%), Positives = 133/235 (56%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
RP I APMV S+LPFR L R Y + YTPM+ ++ F K R +F+T D L
Sbjct: 19 RPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHP-KGRYFDFSTNDADASLI 77
Query: 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE--K 219
+QF +DP IL AA+ V PY D + IN GCPQ A + G+ L+D V LV K
Sbjct: 78 LQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVK 137
Query: 220 LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279
L + KIR+ +L T +++E +G ++ VHGRTR +D F + +AI+
Sbjct: 138 STLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTR--QDRSSFPVNLDAIR 195
Query: 280 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 334
V+ ++IPV+ANG+V+ + + + T +G++SA LLENPALFAG+ W
Sbjct: 196 EVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPW 250
>CGD|CAL0003746 [details] [associations]
symbol:orf19.966 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
CGD:CAL0003746 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 RefSeq:XP_716804.1
RefSeq:XP_716864.1 ProteinModelPortal:Q5A4Y0 STRING:Q5A4Y0
GeneID:3641524 GeneID:3641580 KEGG:cal:CaO19.8581
KEGG:cal:CaO19.966 Uniprot:Q5A4Y0
Length = 339
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 95/281 (33%), Positives = 146/281 (51%)
Query: 101 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPL 160
GRP I PMV S+LPFR LCR Y + YTPM+ +R F +E R+ +F T D+ +
Sbjct: 24 GRPAYIAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDKCV 83
Query: 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE-- 218
VQ N+ + + + P+ D + IN GCP + R GA LM + LV L++
Sbjct: 84 IVQVGVNNVDDFMKFIEMIHPFVDGIGINCGCPIKEQVREGIGAALMSDPDLVAELIKTA 143
Query: 219 KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
K ++ + KIR+ ++ TI + + +AG L VHGRT++ + D AI
Sbjct: 144 KDKYGDSICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVHGRTKNTRSSVPVNLD--AI 201
Query: 279 KAVK-NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 337
K ++ N IPV+ANG+ + D QK ++ TG +GV+SA +L NPALF G W
Sbjct: 202 KIIRENVTTIPVIANGDCFTLTDFQKIVDYTGVDGVMSARGVLANPALFTGLDKTPW--S 259
Query: 338 SEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLL 378
+ E+ +L L Y +P+++ + H+ KL+
Sbjct: 260 AVEM--------------FLHLVTAYGLPYKLAQYHLAKLM 286
>UNIPROTKB|A6QPA8 [details] [associations]
symbol:DUS4L "DUS4L protein" species:9913 "Bos taurus"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 EMBL:DAAA02010587
EMBL:BC149229 IPI:IPI00866854 RefSeq:NP_001095407.1
UniGene:Bt.13512 STRING:A6QPA8 Ensembl:ENSBTAT00000029128
GeneID:511017 KEGG:bta:511017 InParanoid:A6QPA8 OMA:YLENEHK
NextBio:20869728 Uniprot:A6QPA8
Length = 238
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 85/210 (40%), Positives = 124/210 (59%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
I APMV S+L FR L R+Y + YTPM+ + F S K R+ EF T + D PL VQF
Sbjct: 30 ICAPMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQFA 89
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225
AND +L +AAR V PY + +DIN GCPQR A YGA L++ LV+ +V+++ +
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 226 VP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282
P VS KIR+ +L T+ + E G S + VHGRT +E+ + AIK +K
Sbjct: 150 NPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERHQP---VHYEAIKIIK 206
Query: 283 NALRIPVLANGNVRHMEDVQKCLEETGCEG 312
++ IP++ANG++R +++ + TG +G
Sbjct: 207 ESMSIPIVANGDIRSLKEAENVWHTTGTDG 236
>UNIPROTKB|I3LP14 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000074907 OMA:YLENEHK EMBL:FP565643
Ensembl:ENSSSCT00000023658 Uniprot:I3LP14
Length = 237
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 85/209 (40%), Positives = 123/209 (58%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
+ APMV S+L FR L R+Y + YTPM+ + F S K R+ EF T + D PL VQF
Sbjct: 32 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFA 91
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225
AND +L +AAR V PY + +DIN GCPQR A YGA L++ LVK +V+++ +
Sbjct: 92 ANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKPELVKDMVKQVRNQVE 151
Query: 226 VP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282
P VS KIR+ +L T+ + E G S + VHGRT +E+ + AIK +K
Sbjct: 152 NPRFSVSIKIRIHSDLTRTVDLCRKAEATGVSWITVHGRTVEERHQP---VHYEAIKIIK 208
Query: 283 NALRIPVLANGNVRHMEDVQKCLEETGCE 311
++ IPV+ANG++R +++ + TG +
Sbjct: 209 ESMSIPVIANGDIRSLKEAENVWHMTGTD 237
>UNIPROTKB|H0YGW8 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000538833 Uniprot:H0YGW8
Length = 298
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 75/169 (44%), Positives = 106/169 (62%)
Query: 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 283
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 8 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRK 67
Query: 284 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 343
A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 68 AVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 118
Query: 344 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 119 -------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 160
>UNIPROTKB|J3QQL9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 HGNC:HGNC:30086
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Ensembl:ENST00000577907 Uniprot:J3QQL9
Length = 152
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 73/154 (47%), Positives = 99/154 (64%)
Query: 97 WTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ R + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQ AA + YCD +D+NLGCPQ IA+RG+YGAFL D L+
Sbjct: 70 CPEDRPLIVQ-----------AALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 118
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 247
+ ++ L+VPV+CKIRVFP + T++YA+M
Sbjct: 119 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQM 152
>UNIPROTKB|Q8EJR8 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 100/311 (32%), Positives = 165/311 (53%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFT-ESEKYRNEEFATCKEDRPLFV 162
+LIVAPM ++ FR LC RYGA A + ML S +++K R + E+ V
Sbjct: 11 QLIVAPMAGVTDQAFRNLCLRYGAALAVSEMLSSNPEVWDTDKSR-QRMTHSGEEGIRSV 69
Query: 163 QFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 221
Q DPE++ AA+ VE +DIN+GCP + + G+ LM N PLVK +++ +
Sbjct: 70 QIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKDILQAVV 129
Query: 222 LNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279
++VPV+ KIR P ++ ++ A++ ED G + LAVHGRTR K A+++ IK
Sbjct: 130 AAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQCM--YKGNAEYDTIK 187
Query: 280 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSE 339
A+K + IPV+ANG++ E + L+ TG + ++ P +F + ++
Sbjct: 188 AIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIFREIQ--HYLETGN 245
Query: 340 EISKDGNLDQADLLVEYL-KLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRL 398
+++ +Q +++E+L KL + Y ++ IR K +G W+ Q R+ N+L
Sbjct: 246 KLAPIEVAEQRQVMLEHLTKLYDLYG-EYKGIR-FARKHIG-WYLDQEDQRQFRADFNQL 302
Query: 399 -TFEFLYNLVD 408
T Y+LV+
Sbjct: 303 ETAAEQYSLVE 313
>TIGR_CMR|SO_0394 [details] [associations]
symbol:SO_0394 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 100/311 (32%), Positives = 165/311 (53%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFT-ESEKYRNEEFATCKEDRPLFV 162
+LIVAPM ++ FR LC RYGA A + ML S +++K R + E+ V
Sbjct: 11 QLIVAPMAGVTDQAFRNLCLRYGAALAVSEMLSSNPEVWDTDKSR-QRMTHSGEEGIRSV 69
Query: 163 QFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 221
Q DPE++ AA+ VE +DIN+GCP + + G+ LM N PLVK +++ +
Sbjct: 70 QIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKDILQAVV 129
Query: 222 LNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279
++VPV+ KIR P ++ ++ A++ ED G + LAVHGRTR K A+++ IK
Sbjct: 130 AAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQCM--YKGNAEYDTIK 187
Query: 280 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSE 339
A+K + IPV+ANG++ E + L+ TG + ++ P +F + ++
Sbjct: 188 AIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIFREIQ--HYLETGN 245
Query: 340 EISKDGNLDQADLLVEYL-KLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRL 398
+++ +Q +++E+L KL + Y ++ IR K +G W+ Q R+ N+L
Sbjct: 246 KLAPIEVAEQRQVMLEHLTKLYDLYG-EYKGIR-FARKHIG-WYLDQEDQRQFRADFNQL 302
Query: 399 -TFEFLYNLVD 408
T Y+LV+
Sbjct: 303 ETAAEQYSLVE 313
>UNIPROTKB|Q3A9L8 [details] [associations]
symbol:CHY_2369 "tRNA-dihydrouridine synthase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 96/303 (31%), Positives = 157/303 (51%)
Query: 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDR 158
KL P +IVAPM ++ FR++C+ +GA T M++ + E
Sbjct: 9 KLKNP-VIVAPMAGVTDKAFRLICQSFGAGLTVTEMINDLALLHGNSKTRQMIDLQGEAM 67
Query: 159 PLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQ-RIARRGNYGAFLMDNLPLVKSL 216
P+ VQ + PE + AAR VE +DIN+GCP +I + G GA LM L + +
Sbjct: 68 PVAVQIFGSSPEKMAEAARIVEEAGASMIDINMGCPAPKIVKNGE-GAALMLKPELAEKI 126
Query: 217 VEKLALNLNVPVSCKIRV-FP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDE-KDGKKFRA 273
V + ++VPVS KIR F N + I++A+ +E AG L+ VHGRTR++ GK A
Sbjct: 127 VMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGADLITVHGRTREQFYSGK---A 183
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
DW I+ VK A+++ V NG+V + ++ LE TG + V+ +++ NP L +
Sbjct: 184 DWEIIRRVKQAVKVKVAGNGDVDSPQKAKEMLELTGVDFVMIGRAVMGNPWLIQ--QIVF 241
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG---VRE 390
++ E + K ++A++ + + + K+ + +R + K G +F+ PG +RE
Sbjct: 242 YLERGEILPKPSPQEKAEVALRHFEYLLKFKGEYIAVRE-MRKHGGWYFKGLPGASRLRE 300
Query: 391 DLN 393
LN
Sbjct: 301 ILN 303
>TIGR_CMR|CHY_2369 [details] [associations]
symbol:CHY_2369 "putative TIM-barrel protein, NifR3
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 96/303 (31%), Positives = 157/303 (51%)
Query: 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDR 158
KL P +IVAPM ++ FR++C+ +GA T M++ + E
Sbjct: 9 KLKNP-VIVAPMAGVTDKAFRLICQSFGAGLTVTEMINDLALLHGNSKTRQMIDLQGEAM 67
Query: 159 PLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQ-RIARRGNYGAFLMDNLPLVKSL 216
P+ VQ + PE + AAR VE +DIN+GCP +I + G GA LM L + +
Sbjct: 68 PVAVQIFGSSPEKMAEAARIVEEAGASMIDINMGCPAPKIVKNGE-GAALMLKPELAEKI 126
Query: 217 VEKLALNLNVPVSCKIRV-FP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDE-KDGKKFRA 273
V + ++VPVS KIR F N + I++A+ +E AG L+ VHGRTR++ GK A
Sbjct: 127 VMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGADLITVHGRTREQFYSGK---A 183
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
DW I+ VK A+++ V NG+V + ++ LE TG + V+ +++ NP L +
Sbjct: 184 DWEIIRRVKQAVKVKVAGNGDVDSPQKAKEMLELTGVDFVMIGRAVMGNPWLIQ--QIVF 241
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG---VRE 390
++ E + K ++A++ + + + K+ + +R + K G +F+ PG +RE
Sbjct: 242 YLERGEILPKPSPQEKAEVALRHFEYLLKFKGEYIAVRE-MRKHGGWYFKGLPGASRLRE 300
Query: 391 DLN 393
LN
Sbjct: 301 ILN 303
>TIGR_CMR|GSU_1005 [details] [associations]
symbol:GSU_1005 "dihydrouridine synthase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI HOGENOM:HOG000217853 RefSeq:NP_952059.1
ProteinModelPortal:Q74EF7 GeneID:2685628 KEGG:gsu:GSU1005
PATRIC:22024782 ProtClustDB:CLSK828131
BioCyc:GSUL243231:GH27-991-MONOMER Uniprot:Q74EF7
Length = 325
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 78/231 (33%), Positives = 126/231 (54%)
Query: 100 LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRP 159
LG LI+APM + LPFR+L R GA +T M+ K E + DRP
Sbjct: 12 LGN-NLILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRP 70
Query: 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLPLVKSLVE 218
L +Q +DP+++ A V+ Y D +DIN+GCP +++ G G+ LM V+++V
Sbjct: 71 LGIQLFGDDPDVMGRVAATVDGYGDLIDINMGCPVKKVVGTGA-GSALMREPDKVRAIVR 129
Query: 219 KLALNLNVPVSCKIRVFPNLQDT--IKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADW 275
+ +P++ KIR + +D I+ A++ E+ GC+ + +H R+R + +G ADW
Sbjct: 130 AVRRATRLPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLHPRSRAQMFEGT---ADW 186
Query: 276 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+ +K A+ IPV+ +G++ DV L+ TGC+GV+ A L NP +F
Sbjct: 187 TKLAELKQAVAIPVIGSGDLFSAADVAAMLDRTGCDGVMIARGALGNPWIF 237
>ZFIN|ZDB-GENE-100922-233 [details] [associations]
symbol:dus2l "dihydrouridine synthase 2-like, SMM1
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
ZFIN:ZDB-GENE-100922-233 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543
GeneTree:ENSGT00550000075019 EMBL:CU855766 EMBL:CU855937
IPI:IPI00902127 RefSeq:XP_001342694.3 Ensembl:ENSDART00000110221
Ensembl:ENSDART00000139002 GeneID:100003049 KEGG:dre:100003049
NextBio:20785702 Uniprot:E7F220
Length = 504
Score = 330 (121.2 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 79/244 (32%), Positives = 126/244 (51%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE----------- 150
R K I+APMV LP R+L YGA+ Y L + E+ N+
Sbjct: 16 RQKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMAQCERVENDVLQTIDFVAPDE 75
Query: 151 ---FATC-KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFL 206
F TC KE + Q DPE L A+ VE VD+N+GCP+ + +G G+ L
Sbjct: 76 RVMFRTCSKESGRVVFQMGTADPERALAVAKLVENDVAAVDVNMGCPKEYSTKGGMGSAL 135
Query: 207 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 266
+ + +++++ L ++ PV+CKIR+ ++DT+ K +E G + +AVHGR +DE+
Sbjct: 136 LSDPEKIEAILTTLVKGISKPVTCKIRILSTIEDTVNLVKRIEKTGVAAIAVHGRMKDER 195
Query: 267 DGKKFRADWNAIKAVKNALRIPVLANGN----VRHMEDVQKCLEETGCEGVLSAESLLEN 322
D+ I+AV ++ +PV+ANG V+ ED++ E TG V+ A + + N
Sbjct: 196 PRHPVHCDY--IQAVAQSVSVPVIANGGSSDIVKEFEDIETFRESTGASSVMLARAAMWN 253
Query: 323 PALF 326
P++F
Sbjct: 254 PSVF 257
>MGI|MGI:1913619 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like (SMM1, S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 MGI:MGI:1913619 GO:GO:0005783
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580 HOVERGEN:HBG079551
KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W EMBL:AK009391 EMBL:BC058431
IPI:IPI00110119 RefSeq:NP_079794.1 UniGene:Mm.287500 PDB:1WHN
PDBsum:1WHN ProteinModelPortal:Q9D7B1 SMR:Q9D7B1 STRING:Q9D7B1
PhosphoSite:Q9D7B1 PaxDb:Q9D7B1 PRIDE:Q9D7B1
Ensembl:ENSMUST00000034375 GeneID:66369 KEGG:mmu:66369
GeneTree:ENSGT00550000075019 InParanoid:Q9D7B1
EvolutionaryTrace:Q9D7B1 NextBio:321469 Bgee:Q9D7B1
Genevestigator:Q9D7B1 GermOnline:ENSMUSG00000031901 Uniprot:Q9D7B1
Length = 493
Score = 320 (117.7 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 82/254 (32%), Positives = 129/254 (50%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE------------- 150
KLI+APMV LP R+L YGA+ Y L + ++ NE
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 72
Query: 151 -FATCKEDRPLFV-QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
F TC+ ++ V Q +D E L AR VE +D+N+GCP+ + +G GA L+
Sbjct: 73 VFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
+ ++ ++ L + PV+CKIR+ P+L+DT+ K +E G S +AVHGR RDE+
Sbjct: 133 DPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDERPQ 192
Query: 269 KKFRADWNAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPA 324
+ I+A+ L IPV+ANG H++ D++ + T V+ A + + NP+
Sbjct: 193 HPVSCE--VIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPS 250
Query: 325 LFA--GFRTAEWIV 336
+F G R E ++
Sbjct: 251 IFLKDGLRPLEEVM 264
>RGD|1305612 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 RGD:1305612
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 EMBL:CH473972 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:BC158728 IPI:IPI00363521
RefSeq:NP_001099651.1 UniGene:Rn.18304 SMR:B0BN89 STRING:B0BN89
Ensembl:ENSRNOT00000026827 GeneID:291978 KEGG:rno:291978
UCSC:RGD:1305612 NextBio:633545 Genevestigator:B0BN89
Uniprot:B0BN89
Length = 493
Score = 319 (117.4 bits), Expect = 2.1e-28, P = 2.1e-28
Identities = 82/254 (32%), Positives = 128/254 (50%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE------------- 150
KLI+APMV LP R+L YGA+ Y L + + NE
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCRRVVNEVLSTVDFVAPDDRV 72
Query: 151 -FATCKEDRPLFV-QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
F TC+ ++ V Q +D E L AR VE +D+N+GCP+ + +G GA L+
Sbjct: 73 VFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
+ ++ ++ L + PV+CKIR+ P+L+DT+ K +E G S +AVHGR RDE+
Sbjct: 133 DPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDERPQ 192
Query: 269 KKFRADWNAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPA 324
+ I+A+ L IPV+ANG H++ D++ + T V+ A + + NP+
Sbjct: 193 HPVSCE--VIRAIAETLSIPVIANGGSHDHIQQHLDIEDFRQATAASSVMVARAAMWNPS 250
Query: 325 LFA--GFRTAEWIV 336
+F G R E ++
Sbjct: 251 IFLKDGLRPLEEVM 264
>UNIPROTKB|Q9NX74 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005783
GO:GO:0005739 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:CH471092 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AB101210
EMBL:AK000406 EMBL:AK290578 EMBL:BC006527 IPI:IPI00015804
RefSeq:NP_001258691.1 RefSeq:NP_060273.1 UniGene:Hs.534460
ProteinModelPortal:Q9NX74 SMR:Q9NX74 IntAct:Q9NX74 STRING:Q9NX74
PhosphoSite:Q9NX74 DMDM:73620832 PaxDb:Q9NX74 PRIDE:Q9NX74
DNASU:54920 Ensembl:ENST00000358896 Ensembl:ENST00000565263
GeneID:54920 KEGG:hsa:54920 UCSC:uc002evi.3 CTD:54920
GeneCards:GC16P068058 HGNC:HGNC:26014 HPA:HPA042560 HPA:HPA043528
MIM:609707 neXtProt:NX_Q9NX74 PharmGKB:PA142671937
HOGENOM:HOG000195580 HOVERGEN:HBG079551 InParanoid:Q9NX74 KO:K05543
OMA:YHNKLIL OrthoDB:EOG4MW85W PhylomeDB:Q9NX74 GenomeRNAi:54920
NextBio:57992 ArrayExpress:Q9NX74 Bgee:Q9NX74 CleanEx:HS_DUS2L
Genevestigator:Q9NX74 Uniprot:Q9NX74
Length = 493
Score = 318 (117.0 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 80/254 (31%), Positives = 129/254 (50%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE------------- 150
KLI+APMV LP R+L YGA+ Y L + ++ NE
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 151 -FATC-KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
F TC +E + Q +D E L AR VE +D+N+GCP++ + +G GA L+
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 132
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
+ ++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 269 KKFRADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCEGVLSAESLLENPA 324
+ IKA+ + L IPV+ANG +++ D++ + T V+ A + + NP+
Sbjct: 193 HPVSCE--VIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPS 250
Query: 325 LFA--GFRTAEWIV 336
+F G R E ++
Sbjct: 251 IFLKEGLRPLEEVM 264
>UNIPROTKB|Q0VC60 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:DAAA02046690 EMBL:BC120342
IPI:IPI00715355 RefSeq:NP_001068887.1 UniGene:Bt.15762 SMR:Q0VC60
STRING:Q0VC60 Ensembl:ENSBTAT00000019500 GeneID:509795
KEGG:bta:509795 InParanoid:Q0VC60 NextBio:20869132 Uniprot:Q0VC60
Length = 493
Score = 314 (115.6 bits), Expect = 7.9e-28, P = 7.9e-28
Identities = 79/242 (32%), Positives = 123/242 (50%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE------------- 150
KLI+APMV LP R+L YGA+ Y L + ++ NE
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELVDLKMLQCKRVVNEALSTVDFVAPDDRV 72
Query: 151 -FATCKEDRPLFV-QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
F TC+ ++ V Q +D E L AR VE +D+N+GCP+ + +G GA L+
Sbjct: 73 VFRTCEREQSKVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
+ ++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 269 KKFRADWNAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPA 324
+ AIKA+ L IPV+ANG H++ D++ T V+ A + + NP+
Sbjct: 193 HPVSCE--AIKAIAETLSIPVIANGGSHDHIQGYLDIEDFRRATAASSVMVARAAMWNPS 250
Query: 325 LF 326
+F
Sbjct: 251 IF 252
>UNIPROTKB|I3LES5 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:FP565347 RefSeq:XP_003355825.1
Ensembl:ENSSSCT00000028203 GeneID:100621573 KEGG:ssc:100621573
Uniprot:I3LES5
Length = 493
Score = 310 (114.2 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 78/242 (32%), Positives = 124/242 (51%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE------------- 150
KLI+APMV LP R+L YGA+ Y L + ++ NE
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTVDFVAPDDRV 72
Query: 151 -FATCKEDRPLFV-QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
F TC+ ++ V Q +D E L A+ VE +D+N+GCP+ + +G GA L+
Sbjct: 73 VFRTCEREQSRVVFQMGTSDAERALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
+ ++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRLLPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 269 KKFRADWNAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPA 324
+ AIKA+ L IPV+ANG H++ D++ + T V+ A + + NP+
Sbjct: 193 HPVSCE--AIKAIAETLSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWNPS 250
Query: 325 LF 326
+F
Sbjct: 251 VF 252
>TAIR|locus:2114713 [details] [associations]
symbol:AT3G49640 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006808 "regulation of nitrogen
utilization" evidence=ISS] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
EMBL:CP002686 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05543 OMA:KEMIMHY
IPI:IPI00548775 RefSeq:NP_190533.3 UniGene:At.74022
ProteinModelPortal:F4IY04 SMR:F4IY04 PRIDE:F4IY04
EnsemblPlants:AT3G49640.1 GeneID:824126 KEGG:ath:AT3G49640
Uniprot:F4IY04
Length = 329
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 84/247 (34%), Positives = 123/247 (49%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPML--HSRIFTES------------EKYR-N 148
KL++APMV L FRML YGA+ Y + H + E EK N
Sbjct: 6 KLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVEKGTDN 65
Query: 149 EEFATCKEDRPLFV-QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM 207
F+TC E++ V Q +D L A+ V +DIN+GCP+ + +G GA L+
Sbjct: 66 VVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGMGAALL 125
Query: 208 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 267
L+ ++ L NL+VPV+CKIR+ + DT++ A+ +E G LAVHGR D
Sbjct: 126 SKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGRKI--AD 183
Query: 268 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
+ A W+ I V AL IPV+ANG+V +D + TG V+ A + N ++F+
Sbjct: 184 RPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNASIFS 243
Query: 328 GFRTAEW 334
+ W
Sbjct: 244 PKGKSHW 250
>UNIPROTKB|E2RKU2 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AAEX03004122 RefSeq:XP_546866.3
ProteinModelPortal:E2RKU2 Ensembl:ENSCAFT00000032371 GeneID:489746
KEGG:cfa:489746 NextBio:20862882 Uniprot:E2RKU2
Length = 493
Score = 307 (113.1 bits), Expect = 4.9e-27, P = 4.9e-27
Identities = 78/254 (30%), Positives = 129/254 (50%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE------------- 150
KLI+APMV LP R+L YGA+ Y L + ++ NE
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDERV 72
Query: 151 -FATCKEDRPLFV-QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
F TC+ ++ V Q +D + L A+ VE +D+N+GCP+ + +G GA L+
Sbjct: 73 VFRTCEREQSRVVFQMGTSDADRALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
+ ++ ++ L + PV+CKIR+ P+L+DT+ K +E G + + VHGR R+E+
Sbjct: 133 DPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAVTVHGRKREERPQ 192
Query: 269 KKFRADWNAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPA 324
+ AIKA+ + IPV+ANG H++ D++ + T V+ A + + NP+
Sbjct: 193 HPVSCE--AIKAIAETVSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWNPS 250
Query: 325 LFA--GFRTAEWIV 336
+F G R E ++
Sbjct: 251 IFLKEGLRPLEEVM 264
>UNIPROTKB|Q81VW4 [details] [associations]
symbol:BA_0075 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
HOGENOM:HOG000217853 RefSeq:NP_842644.2 ProteinModelPortal:Q81VW4
IntAct:Q81VW4 DNASU:1087319 EnsemblBacteria:EBBACT00000009344
GeneID:1087319 KEGG:ban:BA_0075 PATRIC:18777630
ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 93/313 (29%), Positives = 165/313 (52%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
+++APM FR+ + +GA M+ + + K + + ++PL +Q
Sbjct: 20 VVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREKPLSLQI 79
Query: 165 CANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGA-FLMDNLPLVKSLVEKLA 221
+ E L++AA+ V+ Y D +DIN+GCP + + GA +L+D + + +V +
Sbjct: 80 FGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYE-MVAAVV 138
Query: 222 LNLNVPVSCKIRVFPNLQD---TIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNA 277
+ PV+ K+R+ + +D I+ AK +E AG ++AVHGRTR + +GK ADW+
Sbjct: 139 DAVEKPVTVKMRIGWD-EDHIFAIENAKAVERAGGQVVAVHGRTRVQMYEGK---ADWDI 194
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 337
IK VK A+ IPV+ NG+V +D ++ L+E G +GV+ + L +P + +RT +++
Sbjct: 195 IKQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMI--YRTVKYLET 252
Query: 338 SEEISKDGNLDQADLLVEYL-KLCE--KYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNA 394
E + + ++ D+ + +L +L + V R +R H L + R VR +NA
Sbjct: 253 GELMPEPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYL-KGIRGNANVRNGINA 311
Query: 395 QNRLTFEFLYNLV 407
N T E L N++
Sbjct: 312 CN--TREDLANVL 322
>UNIPROTKB|Q87VS1 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:NP_794598.1 ProteinModelPortal:Q87VS1
GeneID:1186547 KEGG:pst:PSPTO_4864 PATRIC:20001236
ProtClustDB:CLSK868944 BioCyc:PSYR223283:GJIX-4930-MONOMER
Uniprot:Q87VS1
Length = 337
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 89/302 (29%), Positives = 149/302 (49%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
LI+APM ++ PFR LCR+ GA + M+ S + + + + P VQ
Sbjct: 15 LILAPMAGVTDQPFRQLCRQLGAGLVVSEMVTSDMSLWNSRKSRLRMIHAGDPEPRSVQI 74
Query: 165 CANDPEILLNAAR-RVEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
D +++ +AAR VE +DIN+GCP +++ + A L D LV +++ +
Sbjct: 75 AGGDAQMMADAARANVELGAQIIDINMGCPAKKVCNKAAGSALLKDE-QLVNDILQAVVA 133
Query: 223 NLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTR-DEKDGKKFRADWNAIK 279
++VPV+ KIR + ++ + AK+ E AG LAVHGRTR D G+ A+++ I
Sbjct: 134 AVDVPVTLKIRTGWDRDNRNGLTVAKIAEQAGIQALAVHGRTRADLYTGE---AEYDTIA 190
Query: 280 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSE 339
+K A+ IPV ANG++ E + L+ TG +G+L + P +F +++ +
Sbjct: 191 MIKQAVSIPVFANGDIDSPEKARHVLQATGADGLLIGRAAQGRPWIFREIE--HYLLTGK 248
Query: 340 EISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN 396
+ + + +L+E+L + + R+ R HV G + PG RE N
Sbjct: 249 TLPALQSSEVERILLEHLAALHVFYGDVMGVRIARKHV----GWYLATLPGAREFRALFN 304
Query: 397 RL 398
RL
Sbjct: 305 RL 306
>TIGR_CMR|BA_0075 [details] [associations]
symbol:BA_0075 "TIM-barrel protein, putative, NifR3 family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 HOGENOM:HOG000217853 RefSeq:NP_842644.2
ProteinModelPortal:Q81VW4 IntAct:Q81VW4 DNASU:1087319
EnsemblBacteria:EBBACT00000009344 GeneID:1087319 KEGG:ban:BA_0075
PATRIC:18777630 ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 93/313 (29%), Positives = 165/313 (52%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
+++APM FR+ + +GA M+ + + K + + ++PL +Q
Sbjct: 20 VVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREKPLSLQI 79
Query: 165 CANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGA-FLMDNLPLVKSLVEKLA 221
+ E L++AA+ V+ Y D +DIN+GCP + + GA +L+D + + +V +
Sbjct: 80 FGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNKIYE-MVAAVV 138
Query: 222 LNLNVPVSCKIRVFPNLQD---TIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNA 277
+ PV+ K+R+ + +D I+ AK +E AG ++AVHGRTR + +GK ADW+
Sbjct: 139 DAVEKPVTVKMRIGWD-EDHIFAIENAKAVERAGGQVVAVHGRTRVQMYEGK---ADWDI 194
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 337
IK VK A+ IPV+ NG+V +D ++ L+E G +GV+ + L +P + +RT +++
Sbjct: 195 IKQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGDPWMI--YRTVKYLET 252
Query: 338 SEEISKDGNLDQADLLVEYL-KLCE--KYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNA 394
E + + ++ D+ + +L +L + V R +R H L + R VR +NA
Sbjct: 253 GELMPEPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYL-KGIRGNANVRNGINA 311
Query: 395 QNRLTFEFLYNLV 407
N T E L N++
Sbjct: 312 CN--TREDLANVL 322
>TIGR_CMR|NSE_0373 [details] [associations]
symbol:NSE_0373 "putative tRNA-dihydrouridine synthase"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_506262.1
ProteinModelPortal:Q2GE34 STRING:Q2GE34 GeneID:3932261
KEGG:nse:NSE_0373 PATRIC:22680819 OMA:ECAKEHL
ProtClustDB:CLSK2527833 BioCyc:NSEN222891:GHFU-398-MONOMER
Uniprot:Q2GE34
Length = 331
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 65/222 (29%), Positives = 118/222 (53%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
+I+APM +++P+R L + +GA + M+ SR K ++ + + +Q
Sbjct: 14 VILAPMSGVTDMPYRDLVKSFGAGLVVSEMIASRAMILKTKDTMKKVSLSPREDITAIQL 73
Query: 165 CANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223
+P+++ AA+ E +DIN GCP + G G++LM + ++E
Sbjct: 74 AGFEPDVMAEAAKINEDMGAKIIDINFGCPVKKVVNGYAGSYLMKDECHAAKILEATVKA 133
Query: 224 LNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 281
+ +PV+ K+R N ++ K AK+ ED G ++ +HGRTR + K ++DW I+ V
Sbjct: 134 VKIPVTLKMRTGWDENHRNAPKLAKIAEDLGIKMITIHGRTRAQM--YKGKSDWQFIRTV 191
Query: 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323
KN ++IPV+ANG+++ ED ++ L E+G +G++ P
Sbjct: 192 KNTVKIPVIANGDIKTYEDAERALVESGADGIMIGRGAYGKP 233
>UNIPROTKB|E1C4F6 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AADN02038196 IPI:IPI00588517
ProteinModelPortal:E1C4F6 Ensembl:ENSGALT00000005388 Uniprot:E1C4F6
Length = 493
Score = 296 (109.3 bits), Expect = 8.7e-26, P = 8.7e-26
Identities = 76/245 (31%), Positives = 126/245 (51%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNE--E--------- 150
R K I+APMV LP R+L YGA+ Y L + ++ NE E
Sbjct: 10 RGKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMMQCKRVVNEILETVDFVAPNE 69
Query: 151 ---FATCKEDRPLFV-QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFL 206
F TC+ +R + Q + D L A+ VE +DIN+GCP+ + +G GA L
Sbjct: 70 RVVFRTCERERHRVIFQMGSADAGRALAVAKLVESDVAGIDINMGCPKEYSTKGGMGAAL 129
Query: 207 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 266
+ + ++S++ L + PV+CKIR+ P+++DT+ K +E G + +AVHGR +K
Sbjct: 130 LSDPDKIESILTTLVKGICKPVTCKIRILPSVEDTVDLVKRIEKTGIAAIAVHGRLERKK 189
Query: 267 DGK-KFRADWNAIKAVKNALRIPVLANGN----VRHMEDVQKCLEETGCEGVLSAESLLE 321
+ + + + IKA+ A+ IPV+ANG ++ D++ + T V+ A + +
Sbjct: 190 EERPQHPVHCDVIKAISEAVSIPVIANGGSHDFIKEYGDIETFQKATAASSVMIARAAMW 249
Query: 322 NPALF 326
NP++F
Sbjct: 250 NPSIF 254
>TIGR_CMR|APH_0575 [details] [associations]
symbol:APH_0575 "putative tRNA-dihydrouridine synthase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_505166.1 ProteinModelPortal:Q2GKD5 STRING:Q2GKD5
GeneID:3930783 KEGG:aph:APH_0575 PATRIC:20949816
ProtClustDB:CLSK2766800 BioCyc:APHA212042:GHPM-599-MONOMER
Uniprot:Q2GKD5
Length = 315
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 84/311 (27%), Positives = 148/311 (47%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
+I+APM ++LPFR R+ GA + M+ SR + ++ C VQ
Sbjct: 10 VILAPMSGVTDLPFRTTVRKLGAGLLISEMVASRAMILKTRQSMQKSEVCPNTS---VQL 66
Query: 165 CANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223
PEI+ AA+ E +D+N GCP + G G+ LM + + ++E +
Sbjct: 67 AGCTPEIMAEAAKINEDLGAKSIDLNFGCPAKKVVDGYAGSALMKDEVIATKIMESVVKA 126
Query: 224 LNVPVSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
+ VPV+ K+R+ NL + AK+ ED G ++ +HGRTR + ADW +K
Sbjct: 127 VKVPVTVKMRMGWDTTNL-NAPTLAKVAEDVGIQMITIHGRTRSQMFSGS--ADWKFVKR 183
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEE 340
VK ++IPV+ NG++R ++D+ L E+G +GV+ P L + ++ SE
Sbjct: 184 VKECVKIPVIVNGDIRTLDDIVVALNESGADGVMIGRGAYGKPWLIK--QALSFMKNSEI 241
Query: 341 ISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVH----KLLG-EWFRIQPGVRED- 391
+ + ++ +++++ Y + +++R H+ G +FR Q D
Sbjct: 242 LPEPTKSEKLAIILDHYDYALDYYGKDLGVKILRKHLSWYSSSYSGASYFRAQVNTMSDP 301
Query: 392 LNAQNRLTFEF 402
+ + +LT EF
Sbjct: 302 VEVREKLT-EF 311
>TIGR_CMR|CJE_0118 [details] [associations]
symbol:CJE_0118 "tRNA-dihydrouridine synthase B"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 Gene3D:1.10.1200.80 OMA:ECAKEHL
RefSeq:YP_178142.1 ProteinModelPortal:Q5HX43 STRING:Q5HX43
GeneID:3230881 KEGG:cjr:CJE0118 PATRIC:20041943
ProtClustDB:CLSK872423 BioCyc:CJEJ195099:GJC0-122-MONOMER
Uniprot:Q5HX43
Length = 308
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 74/258 (28%), Positives = 137/258 (53%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFT-ESEKYRNEEFATCKEDRPLFVQ 163
L +APM S+LPFR + +++GA+ + M+ S ES K + + + P VQ
Sbjct: 9 LFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHM-LERAELENPYIVQ 67
Query: 164 FCANDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 221
D E+L A + + + D +D N GCP + G+ L++NL L K+LV +
Sbjct: 68 IAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFKNLVGVIK 127
Query: 222 LNLNVPV-SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
N + S K R+ N + K AK+ E G +++HGRTR + K AD+ +I +
Sbjct: 128 ENNKKSLTSVKFRLGFNEKYPEKMAKICESLGVDFISIHGRTRKQLYSGK--ADYGSIAS 185
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEE 340
K +++IPV+ANG++ + ++ ++ + T C+G++ + + NP +F ++ + + E+
Sbjct: 186 AKASVKIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVGNPWIFYEIKSGKSV--DEK 242
Query: 341 ISKDGNLDQADLLVEYLK 358
+ K+ L D ++++ K
Sbjct: 243 LKKEIILTHFDEMIKHYK 260
>UNIPROTKB|P0ABT5 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 EMBL:X62399 EMBL:M95784 EMBL:S67010 EMBL:J03816
EMBL:J03245 PIR:B47043 RefSeq:NP_417726.1 RefSeq:YP_491442.1
ProteinModelPortal:P0ABT5 SMR:P0ABT5 DIP:DIP-48240N IntAct:P0ABT5
EnsemblBacteria:EBESCT00000004917 EnsemblBacteria:EBESCT00000016888
GeneID:12932871 GeneID:947707 KEGG:ecj:Y75_p3178 KEGG:eco:b3260
PATRIC:32121950 EchoBASE:EB1287 EcoGene:EG11311
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR ProtClustDB:PRK10415
BioCyc:EcoCyc:EG11311-MONOMER BioCyc:ECOL316407:JW3228-MONOMER
BioCyc:MetaCyc:EG11311-MONOMER Genevestigator:P0ABT5
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 Uniprot:P0ABT5
Length = 321
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 94/321 (29%), Positives = 158/321 (49%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFT-ESEKYRNEEFATCKEDRPL 160
R +LI APM ++ PFR LC GA + M+ S ES+K R E
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLR-MVHIDEPGIR 67
Query: 161 FVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219
VQ +DP+ + +AAR VE +DIN+GCP + R G+ L+ +VKS++ +
Sbjct: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127
Query: 220 LALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWN 276
+ ++VPV+ KIR P ++ + A++ ED G L +HGRTR +G+ A+++
Sbjct: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE---AEYD 184
Query: 277 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIV 336
+I+AVK + IPV+ANG++ + L+ TG + ++ + P +F R + +
Sbjct: 185 SIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF---REIQHYL 241
Query: 337 GSEEISKDGNLDQAD-LLVEYLKLCEKYPVP---WRMIRSHVHKLLGEWFRIQPGVREDL 392
+ E+ L + LL +++ + P +R+ R HV W+ +Q D
Sbjct: 242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHV-----SWY-LQEHAPND- 294
Query: 393 NAQNRLTFEFLYNLVDRLREL 413
Q R TF + + ++L L
Sbjct: 295 --QFRRTFNAIEDASEQLEAL 313
>UNIPROTKB|Q9KV66 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05540 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:B82341
RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66 DNASU:2615014
GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 74/226 (32%), Positives = 121/226 (53%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKEDRPLFVQ 163
LIVAPM ++ PFR LC RYGA A + M+ ++ K +N E VQ
Sbjct: 12 LIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVHE-GESGIRSVQ 70
Query: 164 FCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
+DP+++ AA+ VE +DIN+GCP + + G+ L+ +++ +++ +
Sbjct: 71 IAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAVVN 130
Query: 223 NLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
+NVPV+ K R + ++ + A++ ED G LA+HGRTR K A++++IKA
Sbjct: 131 AVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACM--YKGEAEYDSIKA 188
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
VK A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 189 VKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIF 234
>TIGR_CMR|VC_0291 [details] [associations]
symbol:VC_0291 "NifR3/Smm1 family protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
PIR:B82341 RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66
DNASU:2615014 GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 74/226 (32%), Positives = 121/226 (53%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKEDRPLFVQ 163
LIVAPM ++ PFR LC RYGA A + M+ ++ K +N E VQ
Sbjct: 12 LIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVHE-GESGIRSVQ 70
Query: 164 FCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
+DP+++ AA+ VE +DIN+GCP + + G+ L+ +++ +++ +
Sbjct: 71 IAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAVVN 130
Query: 223 NLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
+NVPV+ K R + ++ + A++ ED G LA+HGRTR K A++++IKA
Sbjct: 131 AVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACM--YKGEAEYDSIKA 188
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
VK A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 189 VKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIF 234
>UNIPROTKB|Q607L4 [details] [associations]
symbol:MCA1745 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_114184.1 ProteinModelPortal:Q607L4 GeneID:3104455
KEGG:mca:MCA1745 PATRIC:22607332 Uniprot:Q607L4
Length = 327
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 78/231 (33%), Positives = 120/231 (51%)
Query: 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLH-SRIFTESEKYRNEEFATCKED 157
+L P +I+APM ++LPFR LCR++GA A + M+ S + K R + E
Sbjct: 7 RLSSP-VILAPMAGVTDLPFRRLCRQFGAGLAVSEMISASPALQATRKSRLRQDHR-GEP 64
Query: 158 RPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 216
P+ VQ DP + AARR V+ D +DIN+GCP + G+ L+ + LV ++
Sbjct: 65 GPISVQIVGADPREMAEAARRTVDLGADIIDINMGCPAKKVCNVAAGSALLRDEKLVANI 124
Query: 217 VEKLALNLNVPVSCKIRV-FPNL-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
+E + + VPV+ KIR + + ++ + K+ E AG L VHGRTR G A+
Sbjct: 125 LEAVVQAVPVPVTLKIRTGWDSASRNAVSIGKIAESAGIRALTVHGRTR--ACGFAGAAE 182
Query: 275 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
++ I VK A+ IPV+ANG++ + L TG + V+ P L
Sbjct: 183 YSTITEVKKAIGIPVIANGDIDSPGKAEAVLRSTGADAVMIGRGAWGRPWL 233
>TIGR_CMR|SPO_2089 [details] [associations]
symbol:SPO_2089 "tRNA-dihydrouridine synthase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI RefSeq:YP_167319.1 ProteinModelPortal:Q5LRN6
GeneID:3193240 KEGG:sil:SPO2089 PATRIC:23377519
ProtClustDB:CLSK2767269 Uniprot:Q5LRN6
Length = 327
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 77/278 (27%), Positives = 134/278 (48%)
Query: 103 PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFV 162
P +I+APM ++ PFR L +GA + M+ S+ +++ E + V
Sbjct: 12 PPVILAPMAGITDRPFRDLVMEFGAGMVVSEMVASQEMVQAKPGVRERAELSADVENTAV 71
Query: 163 QFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 221
Q D + AAR+V + +DIN+GCP + G G+ L+ L+E +
Sbjct: 72 QLAGRDTHWIAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHALRLIEAVV 131
Query: 222 LNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279
++VPV+ K R+ L + A+ +AG ++ +HGRTR + K RADW AI
Sbjct: 132 AAVDVPVTLKTRLGWDDTLMNAPDVARRAAEAGVRMVTIHGRTRCQF--YKGRADWAAIA 189
Query: 280 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSE 339
AV+ A+ +P++ANG++ ++ L+ +G +GV+ P L A A + +
Sbjct: 190 AVREAVDVPLIANGDITCAHTARQALDRSGADGVMVGRGAQGRPWLLAQIAHALYGTPAP 249
Query: 340 EISKDGNLDQADLLVE-YLKLCEKY--PVPWRMIRSHV 374
E+ + L AD++ Y + + Y + R+ R H+
Sbjct: 250 EVPQGAEL--ADMVARHYQAMLDFYGRELGLRVARKHL 285
>UNIPROTKB|Q489F6 [details] [associations]
symbol:CPS_0550 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_267308.1 ProteinModelPortal:Q489F6
STRING:Q489F6 GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 73/231 (31%), Positives = 128/231 (55%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHS--RIF-TESEKYR--NEEFATCKEDR 158
++++APM ++ PFR LC + GA A + ML S +++ TE K R + + A +
Sbjct: 11 QVMLAPMAGITDQPFRQLCCQLGAGLAVSEMLSSNPKVWNTEKSKLRMLHGDAAGIRS-- 68
Query: 159 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ + P+ L AA+ + +DIN+GCP + + G+ L+ V+ +V
Sbjct: 69 ---VQIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIV 125
Query: 218 EKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 275
+ + +++PV+ KIR + ++ I+ AK+ E++G + LAVHGRTR+ D K A++
Sbjct: 126 QSVVNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTRN--DFYKGNAEY 183
Query: 276 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+ IKA+K A+ IPV+ANG++ E + L+ TG + ++ P +F
Sbjct: 184 DTIKAIKLAISIPVVANGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIF 234
>TIGR_CMR|CPS_0550 [details] [associations]
symbol:CPS_0550 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:YP_267308.1 ProteinModelPortal:Q489F6 STRING:Q489F6
GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 73/231 (31%), Positives = 128/231 (55%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHS--RIF-TESEKYR--NEEFATCKEDR 158
++++APM ++ PFR LC + GA A + ML S +++ TE K R + + A +
Sbjct: 11 QVMLAPMAGITDQPFRQLCCQLGAGLAVSEMLSSNPKVWNTEKSKLRMLHGDAAGIRS-- 68
Query: 159 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ + P+ L AA+ + +DIN+GCP + + G+ L+ V+ +V
Sbjct: 69 ---VQIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIV 125
Query: 218 EKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 275
+ + +++PV+ KIR + ++ I+ AK+ E++G + LAVHGRTR+ D K A++
Sbjct: 126 QSVVNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTRN--DFYKGNAEY 183
Query: 276 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+ IKA+K A+ IPV+ANG++ E + L+ TG + ++ P +F
Sbjct: 184 DTIKAIKLAISIPVVANGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIF 234
>TIGR_CMR|ECH_0758 [details] [associations]
symbol:ECH_0758 "putative tRNA-dihydrouridine synthase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_507556.1
ProteinModelPortal:Q2GG77 STRING:Q2GG77 GeneID:3927061
KEGG:ech:ECH_0758 PATRIC:20576950 ProtClustDB:CLSK749467
BioCyc:ECHA205920:GJNR-761-MONOMER Uniprot:Q2GG77
Length = 317
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 65/223 (29%), Positives = 112/223 (50%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
+I+APM ++ PFR L + GA + M+ SR K + + VQ
Sbjct: 12 VILAPMSGVTDFPFRYLVKSLGAGLLVSEMIASRAMIIQTK---QSLQKSQIQINTAVQL 68
Query: 165 CANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223
DP I+ +AA+ E +DIN GCP + G+ LM + ++E +
Sbjct: 69 AGCDPTIMADAAKLNEDMGAQIIDINFGCPVKKVVNSYAGSALMKDETTAAKILESVVKA 128
Query: 224 LNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKA 280
+ +PV+ K+R N ++ K AK+ E+ G ++ +HGRTR + GK ADW I+
Sbjct: 129 VKIPVTLKMRTGWDNNNLNSPKLAKIAEETGIKMITIHGRTRTQMFTGK---ADWKFIRN 185
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323
+K ++IPV+ NG+++++ D++ LEE+ +G++ P
Sbjct: 186 IKKCVKIPVIVNGDIKNLNDIKTSLEESQADGIMIGRGAYGKP 228
>FB|FBgn0030554 [details] [associations]
symbol:CG1434 species:7227 "Drosophila melanogaster"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISS]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE014298 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05543 GeneTree:ENSGT00550000075019 OMA:KEMIMHY
FlyBase:FBgn0030554 EMBL:BT031195 RefSeq:NP_572950.2 UniGene:Dm.163
SMR:Q9VY45 STRING:Q9VY45 EnsemblMetazoa:FBtr0073903 GeneID:32377
KEGG:dme:Dmel_CG1434 UCSC:CG1434-RA InParanoid:Q9VY45
GenomeRNAi:32377 NextBio:778177 Uniprot:Q9VY45
Length = 473
Score = 276 (102.2 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 82/281 (29%), Positives = 135/281 (48%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE----------- 150
R KLI+APMV LP R+L GA+ YT L +S + N
Sbjct: 23 RNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLIKSIRRPNPALGTVDFVDPSD 82
Query: 151 ----FATC-KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAF 205
F TC +E L +Q +D L + ++ +DIN+GCP+ + +G GA
Sbjct: 83 GTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGMGAA 142
Query: 206 LMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 265
L+ + ++ L L++PV+CKIR+ P+++ TI + L G + + +H RTRDE
Sbjct: 143 LLADPDKAAHILRTLCSGLDIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHARTRDE 202
Query: 266 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHM---EDVQKCLEETGCEGVLSAESLLEN 322
+ + A ++AV A+ IP++ANG ++M +D++K E G + V+ A + N
Sbjct: 203 RP--QHPAHPEVLRAVAQAVDIPIIANGGSKNMHCYDDLRKFQMECGADSVMVARAAQIN 260
Query: 323 PALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY 363
++F +G L +L+ +YL+LC Y
Sbjct: 261 VSIFR---------------PEGLLPMDELIEKYLRLCVDY 286
>WB|WBGene00013201 [details] [associations]
symbol:Y54E5A.6 species:6239 "Caenorhabditis elegans"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
EMBL:AL032643 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OMA:TMTKYVV PIR:T27160
RefSeq:NP_493554.1 UniGene:Cel.16372 ProteinModelPortal:Q9XWJ9
SMR:Q9XWJ9 PaxDb:Q9XWJ9 EnsemblMetazoa:Y54E5A.6 GeneID:173331
KEGG:cel:CELE_Y54E5A.6 UCSC:Y54E5A.6 CTD:173331 WormBase:Y54E5A.6
InParanoid:Q9XWJ9 NextBio:879203 Uniprot:Q9XWJ9
Length = 436
Score = 268 (99.4 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 85/298 (28%), Positives = 134/298 (44%)
Query: 100 LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATC----- 154
L R K I+APMV P R+LC +YGA+ YT + + E+ + NE T
Sbjct: 4 LYRNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDYRNG 63
Query: 155 ---------KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAF 205
+E +Q N E A+ V +D+N+GCP+ + GA
Sbjct: 64 DDIILRLAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSIHCGMGAA 123
Query: 206 LMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 265
L+ + ++ L VPV+CKIRV + +DT+K + +E S L VHGR RDE
Sbjct: 124 LLTQTEKIVDILTSLKSAAKVPVTCKIRVLDDPEDTLKLVQEIEKCRVSALGVHGRRRDE 183
Query: 266 KDGKKFRADWNAIKAVKNALR-IPVLANG---NVRHMEDVQKCLEETGCEGVLSAESLLE 321
+ K R D I+ V A++ IPV++NG + D +K T + A L
Sbjct: 184 RQPDKCRID--EIRDVAQAVQSIPVISNGLSDEIEQYSDFEKYQLLTETSSTMIARKALS 241
Query: 322 NPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLG 379
P++F ++G LD+ + + +L+L +Y + M + V ++LG
Sbjct: 242 TPSIFR---------------REGCLDKYEDIRNFLELACQYDESYTMTKYVVQRILG 284
>UNIPROTKB|J3QLD5 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AC130462 EMBL:AC040162 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000562246 Uniprot:J3QLD5
Length = 208
Score = 253 (94.1 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 64/197 (32%), Positives = 99/197 (50%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE------------- 150
KLI+APMV LP R+L YGA+ Y L + ++ NE
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 151 -FATC-KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
F TC +E + Q +D E L AR VE +D+N+GCP++ + +G GA L+
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 132
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
+ ++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 269 KKFRADWNAIKAVKNAL 285
+ IKA+ + L
Sbjct: 193 HPVSCE--VIKAIADTL 207
>DICTYBASE|DDB_G0283877 [details] [associations]
symbol:dus2l "tRNA-dihydrouridine synthase 2-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA;ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0283877 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000153_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000057 eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082
KO:K05543 RefSeq:XP_638879.1 ProteinModelPortal:Q54QJ2
EnsemblProtists:DDB0238070 GeneID:8624277 KEGG:ddi:DDB_G0283877
OMA:TMTKYVV ProtClustDB:CLSZ2430328 Uniprot:Q54QJ2
Length = 402
Score = 256 (95.2 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 67/241 (27%), Positives = 123/241 (51%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCK---EDRPL 160
K I+APMV P R+L YG + AY+ L +S + NE+ T +D+ L
Sbjct: 33 KKIMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLKTIDFIAKDQTL 92
Query: 161 FVQFCANDPEILLN--------AARRVEPYCDYV---DINLGCPQRIARRGNYGAFLMDN 209
+ D +L A + C+ + DIN+GCP+ + +G G+ L+
Sbjct: 93 CYRTSEKDVRNVLQLGTASSMTALEAAKVVCNDICALDINMGCPKFFSVQGGMGSALLSK 152
Query: 210 LPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
+K ++ L NLN +P++CKIR+ Q+TI +++E G S + VH R E+
Sbjct: 153 PETIKDILTTLKRNLNGIPITCKIRLLSTDQETIDLLRIIESTGVSAIGVHCRMIPERP- 211
Query: 269 KKFRADWNAIKAV-KNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+ A W+ ++ + NA +P++ANG++ D++K ++T + ++ A +++N ++F
Sbjct: 212 -RDPAHWDRLENILSNASFSVPIIANGDIFEHADIEKIKKQTKVDSIMIARGVVKNVSIF 270
Query: 327 A 327
+
Sbjct: 271 S 271
>UNIPROTKB|Q884C6 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016853
GenomeReviews:AE016853_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
RefSeq:NP_791991.1 ProteinModelPortal:Q884C6 GeneID:1183820
KEGG:pst:PSPTO_2169 PATRIC:19995624 OMA:EWIARIQ
ProtClustDB:CLSK867771 BioCyc:PSYR223283:GJIX-2214-MONOMER
Uniprot:Q884C6
Length = 317
Score = 239 (89.2 bits), Expect = 6.5e-20, P = 6.5e-20
Identities = 59/187 (31%), Positives = 96/187 (51%)
Query: 145 KYRNEEFATCKEDR--PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGN 201
KY +E K D PL +Q +DP L NAA E +D+N GCP + R
Sbjct: 48 KYASEFHNGAKTDAGTPLRLQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSR 107
Query: 202 YGAFLMDNLPLVKSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAV 258
GA L+ L+ ++V ++ A+ ++PV+ K+R+ + N + A+ L D G + + V
Sbjct: 108 GGAILLKEPELLHTIVSQVRRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVV 167
Query: 259 HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318
H RT+ DG K A W I ++ +++PV+ANG + +ED ++C E G ++
Sbjct: 168 HARTK--VDGYKPPAHWEWIARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRG 225
Query: 319 LLENPAL 325
L+ P L
Sbjct: 226 LVARPDL 232
>UNIPROTKB|E1BGZ1 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 EMBL:DAAA02019576
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
OMA:MSEWALL GeneTree:ENSGT00550000075134 IPI:IPI00715519
RefSeq:NP_001193247.1 UniGene:Bt.15641 ProteinModelPortal:E1BGZ1
Ensembl:ENSBTAT00000015715 GeneID:508812 KEGG:bta:508812
NextBio:20868690 Uniprot:E1BGZ1
Length = 650
Score = 259 (96.2 bits), Expect = 8.0e-20, P = 8.0e-20
Identities = 78/250 (31%), Positives = 123/250 (49%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED--RPLF 161
KL +AP+ LPFR +C+R+GA+ M + T + + E+A K +F
Sbjct: 306 KLYLAPLTTCGNLPFRRICKRFGADVTCGEMA---VCTNLLQGQTSEWALLKRHPCEDIF 362
Query: 162 -VQFCANDPEILLNAA----RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 216
VQ P+ + A R +E D+VDIN+GCP + + G LM+ L + +
Sbjct: 363 GVQLEGAFPDTMTKCAELLNRTIE--VDFVDINVGCPIDLVFKKGGGCALMNRLAKFQQI 420
Query: 217 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKKFR 272
V + L+VP++ K+R +Q+ + A L D G +L+ +HGR+R+++ K
Sbjct: 421 VRGMNQVLDVPLTVKLRT--GVQERVNLAHRLLPDLRDWGAALVTLHGRSREQRYTKL-- 476
Query: 273 ADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331
ADW I+ A R +P+ NG+V ED + L+ TG GV+ A L P LF +
Sbjct: 477 ADWQYIEQCVAAARPMPLFGNGDVLSYEDANRALQ-TGVAGVMIARGALLKPWLFTEIKE 535
Query: 332 AE-WIVGSEE 340
W + S E
Sbjct: 536 QRHWDISSSE 545
>UNIPROTKB|Q487W0 [details] [associations]
symbol:CPS_0906 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:YP_267655.1 ProteinModelPortal:Q487W0
STRING:Q487W0 DNASU:3523360 GeneID:3523360 KEGG:cps:CPS_0906
PATRIC:21465097 BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 236 (88.1 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 66/201 (32%), Positives = 106/201 (52%)
Query: 134 MLHSRIFTE--SEKYRNEEFATC-KEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDIN 189
+L R+F E + + +C K P+ VQ PE + NAA+ +E +D+N
Sbjct: 40 VLPDRVFHRYCPELIDADVYGSCTKAGTPVRVQLLGQYPEYMAENAAKVIELGSSGIDLN 99
Query: 190 LGCPQRIARRGNYGAFLM---DNL-PLVKSLVEKLALNLNVPVSCKIRV-FPNLQDTIKY 244
GCP + + G+ L+ +NL ++K++ E A+ + VS KIR+ + + I+
Sbjct: 100 FGCPSKTVNKSRGGSILLKDPENLYQIIKAVKE--AVPSDTIVSAKIRLGYEDKTLAIEN 157
Query: 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 304
+ +E AG + L +H RT+ E G K A W+ I VKNA+ IPV+ANG + ++ED KC
Sbjct: 158 GQAVEAAGANELTIHARTKLE--GYKPPAHWHWIAKVKNAINIPVIANGEIWNLEDAIKC 215
Query: 305 LEETGCEGVLSAESLLENPAL 325
E +GC ++ L P L
Sbjct: 216 REISGCTDLMVGRGALTIPNL 236
>TIGR_CMR|CPS_0906 [details] [associations]
symbol:CPS_0906 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI RefSeq:YP_267655.1
ProteinModelPortal:Q487W0 STRING:Q487W0 DNASU:3523360
GeneID:3523360 KEGG:cps:CPS_0906 PATRIC:21465097
BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 236 (88.1 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 66/201 (32%), Positives = 106/201 (52%)
Query: 134 MLHSRIFTE--SEKYRNEEFATC-KEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDIN 189
+L R+F E + + +C K P+ VQ PE + NAA+ +E +D+N
Sbjct: 40 VLPDRVFHRYCPELIDADVYGSCTKAGTPVRVQLLGQYPEYMAENAAKVIELGSSGIDLN 99
Query: 190 LGCPQRIARRGNYGAFLM---DNL-PLVKSLVEKLALNLNVPVSCKIRV-FPNLQDTIKY 244
GCP + + G+ L+ +NL ++K++ E A+ + VS KIR+ + + I+
Sbjct: 100 FGCPSKTVNKSRGGSILLKDPENLYQIIKAVKE--AVPSDTIVSAKIRLGYEDKTLAIEN 157
Query: 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 304
+ +E AG + L +H RT+ E G K A W+ I VKNA+ IPV+ANG + ++ED KC
Sbjct: 158 GQAVEAAGANELTIHARTKLE--GYKPPAHWHWIAKVKNAINIPVIANGEIWNLEDAIKC 215
Query: 305 LEETGCEGVLSAESLLENPAL 325
E +GC ++ L P L
Sbjct: 216 REISGCTDLMVGRGALTIPNL 236
>UNIPROTKB|Q96G46 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:AC011499 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
EMBL:AK023958 EMBL:BC004549 EMBL:BC008362 EMBL:BC009973
EMBL:AL365411 IPI:IPI00186125 IPI:IPI00640947 IPI:IPI00784107
RefSeq:NP_001155091.1 RefSeq:NP_064560.2 UniGene:Hs.284297
ProteinModelPortal:Q96G46 SMR:Q96G46 IntAct:Q96G46 STRING:Q96G46
PhosphoSite:Q96G46 DMDM:110808212 PaxDb:Q96G46 PRIDE:Q96G46
DNASU:56931 Ensembl:ENST00000309061 Ensembl:ENST00000320699
GeneID:56931 KEGG:hsa:56931 UCSC:uc002mdc.3 UCSC:uc002mdd.3
CTD:56931 GeneCards:GC19M005737 HGNC:HGNC:26920 HPA:HPA041854
HPA:HPA041944 neXtProt:NX_Q96G46 PharmGKB:PA142671938
HOGENOM:HOG000240610 HOVERGEN:HBG062413 InParanoid:Q96G46
OMA:MSEWALL OrthoDB:EOG4K6G43 GenomeRNAi:56931 NextBio:62471
ArrayExpress:Q96G46 Bgee:Q96G46 CleanEx:HS_DUS3L
Genevestigator:Q96G46 GermOnline:ENSG00000141994 Uniprot:Q96G46
Length = 650
Score = 256 (95.2 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 77/252 (30%), Positives = 125/252 (49%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDR--P 159
R KL +AP+ LPFR +C+R+GA+ M + T + + E+A K +
Sbjct: 304 RGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMA---VCTNLLQGQMSEWALLKRHQCED 360
Query: 160 LF-VQFCANDPEILLNAA----RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 214
+F VQ P+ + A R VE D+VDIN+GCP + + G LM+ +
Sbjct: 361 IFGVQLEGAFPDTMTKCAELLSRTVE--VDFVDINVGCPIDLVYKKGGGCALMNRSTKFQ 418
Query: 215 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKK 270
+V + L+VP++ KIR +Q+ + A L D G +L+ +HGR+R+++ K
Sbjct: 419 QIVRGMNQVLDVPLTVKIRT--GVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKL 476
Query: 271 FRADWNAIK-AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
ADW I+ V+ A +P+ NG++ ED + ++ TG G++ A L P LF
Sbjct: 477 --ADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEI 533
Query: 330 RTAE-WIVGSEE 340
+ W + S E
Sbjct: 534 KEQRHWDISSSE 545
>UNIPROTKB|F1SBU5 [details] [associations]
symbol:LOC100513458 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:CU928983 EMBL:FP089464
RefSeq:XP_003123132.1 RefSeq:XP_003123140.1 UniGene:Ssc.48250
UniGene:Ssc.82799 Ensembl:ENSSSCT00000014768
Ensembl:ENSSSCT00000014775 GeneID:100512091 GeneID:100513458
KEGG:ssc:100512091 KEGG:ssc:100513458 Uniprot:F1SBU5
Length = 652
Score = 249 (92.7 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 75/250 (30%), Positives = 122/250 (48%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED--RPLF 161
KL +AP+ LPFR +C+R+GA+ M + T + + E+A K +F
Sbjct: 308 KLYLAPLTTCGNLPFRRICKRFGADVTCGEMA---VCTNLLQGQTSEWALLKRHPCEDVF 364
Query: 162 -VQFCANDPEILLNAA----RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 216
VQ P+ + A R +E D+VDIN+GCP + + G LM+ + +
Sbjct: 365 GVQLEGAFPDTMTKCAELLNRTIE--VDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQI 422
Query: 217 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKKFR 272
V + L+VP++ KIR +Q+ + A L D G +L+ +HGR+R+++ K
Sbjct: 423 VRGMNQVLDVPLTVKIRT--GVQERVNLAHRLLPELRDWGAALVTLHGRSREQRYTKL-- 478
Query: 273 ADWNAIK-AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331
ADW I+ V A +P+ NG++ ED + ++ TG G++ A L P LF +
Sbjct: 479 ADWQYIEQCVTAASPMPLFGNGDILSYEDANRAMK-TGVAGIMIARGALLKPWLFTEIKE 537
Query: 332 AE-WIVGSEE 340
W + S E
Sbjct: 538 QRHWDISSSE 547
>ZFIN|ZDB-GENE-040426-1260 [details] [associations]
symbol:dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
ZFIN:ZDB-GENE-040426-1260 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOGENOM:HOG000240610
HOVERGEN:HBG062413 EMBL:BC058066 IPI:IPI00486931 RefSeq:NP_956968.1
UniGene:Dr.81366 ProteinModelPortal:Q6PEH0 STRING:Q6PEH0
GeneID:393647 KEGG:dre:393647 InParanoid:Q6PEH0 NextBio:20814655
ArrayExpress:Q6PEH0 Uniprot:Q6PEH0
Length = 660
Score = 248 (92.4 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 76/248 (30%), Positives = 116/248 (46%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKE--DRP 159
R KL +AP+ LPFR +C+R+GA+ M + T + + E+A K
Sbjct: 314 RDKLYLAPLTTCGNLPFRRVCKRFGADITCGEMA---MCTNLLQGQASEWALLKRHASED 370
Query: 160 LF-VQFCANDPEILLNAARRVEPYCD--YVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 216
LF VQ P+ + A + D +VDIN GCP + + G LM + +
Sbjct: 371 LFGVQLEGCFPDTMTRCAELLNQNIDVDFVDINSGCPIDLVYKKGGGCGLMTRTSKFEQI 430
Query: 217 VEKLALNLNVPVSCKIR--VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
V + L+VP++ KIR V N K ++ G SL+ +HGR+R+++ K AD
Sbjct: 431 VRGMNSVLDVPLTVKIRTGVQQNSNIAHKLIPEMKKWGVSLITLHGRSREQRYTKL--AD 488
Query: 275 WNAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W+ I A +P+ NG++ ED K ETG G++ A L P LF + +
Sbjct: 489 WDYINTCAQLAAPVPLFGNGDILSYEDAMKA-RETGVSGIMVARGALIKPWLFTEIKESR 547
Query: 334 -WIVGSEE 340
W + S E
Sbjct: 548 HWDISSTE 555
>UNIPROTKB|E7EUN9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 Pfam:PF00035 Pfam:PF01207 SMART:SM00358
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 GeneID:54920
HGNC:HGNC:26014 IPI:IPI00909876 RefSeq:NP_001258692.1
ProteinModelPortal:E7EUN9 SMR:E7EUN9 Ensembl:ENST00000432752
UCSC:uc010vkk.2 ArrayExpress:E7EUN9 Bgee:E7EUN9 Uniprot:E7EUN9
Length = 458
Score = 208 (78.3 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 45/147 (30%), Positives = 80/147 (54%)
Query: 196 IARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255
+ + G GA L+ + ++ ++ L PV+CKIR+ P+L+DT+ K +E G +
Sbjct: 85 VFQMGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAA 144
Query: 256 LAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCE 311
+AVHGR R+E+ + IKA+ + L IPV+ANG +++ D++ + T
Sbjct: 145 IAVHGRKREERPQHPVSCE--VIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAAS 202
Query: 312 GVLSAESLLENPALFA--GFRTAEWIV 336
V+ A + + NP++F G R E ++
Sbjct: 203 SVMVARAAMWNPSIFLKEGLRPLEEVM 229
Score = 79 (32.9 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAT----CKEDRP 159
KLI+APMV LP R+L YGA+ Y L + ++ NE +T +DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 160 LF 161
+F
Sbjct: 73 VF 74
>UNIPROTKB|F8WEL2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC004839 EMBL:AC002381 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HGNC:HGNC:21517 IPI:IPI00925668
ProteinModelPortal:F8WEL2 SMR:F8WEL2 Ensembl:ENST00000443233
ArrayExpress:F8WEL2 Bgee:F8WEL2 Uniprot:F8WEL2
Length = 119
Score = 224 (83.9 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 46/90 (51%), Positives = 59/90 (65%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
+ APMV S+L FR L R+Y + YTPM+ + F +S K R+ EF T + D PL VQF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 166 ANDPEILLNAARRVEPYCDYVDINLGCPQR 195
AND +L +AAR V PY + +DIN GCPQR
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQR 119
>UNIPROTKB|F1PS34 [details] [associations]
symbol:LOC100856098 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270 GO:GO:0003676
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AAEX03012510
RefSeq:XP_003639789.1 Ensembl:ENSCAFT00000029778 GeneID:100856098
KEGG:cfa:100856098 Uniprot:F1PS34
Length = 645
Score = 244 (91.0 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 74/250 (29%), Positives = 122/250 (48%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED--RPLF 161
KL +AP+ LPFR +C+R+GA+ M + T + + E+A + +F
Sbjct: 301 KLYLAPLTTCGNLPFRRICKRFGADVTCGEMA---VCTNLLQGQTSEWALLRRHPCEDVF 357
Query: 162 -VQFCANDPEILLNAA----RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 216
VQ P+ + A R +E D+VDIN+GCP + + G LM+ + +
Sbjct: 358 GVQLEGAFPDTMTKCAELLNRTIE--VDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQI 415
Query: 217 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKKFR 272
V + L+VP++ KIR +Q+ + A L + G +L+ +HGR+R+++ K
Sbjct: 416 VRGMNQVLDVPLTVKIRT--GVQERVNLAHRLLPELREWGAALVTLHGRSREQRYTKL-- 471
Query: 273 ADWNAIK-AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331
ADW I+ V A +P+ NG++ ED + ++ TG GV+ A L P LF +
Sbjct: 472 ADWQYIEQCVTAASPMPLFGNGDILSYEDANRAMQ-TGVAGVMIARGALLKPWLFTEIKE 530
Query: 332 AE-WIVGSEE 340
W + S E
Sbjct: 531 QRHWDISSSE 540
>CGD|CAL0003882 [details] [associations]
symbol:SMM1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0003882 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05543 RefSeq:XP_714536.1 RefSeq:XP_714632.1
ProteinModelPortal:Q59YG4 STRING:Q59YG4 GeneID:3643710
GeneID:3643778 KEGG:cal:CaO19.1362 KEGG:cal:CaO19.8942
Uniprot:Q59YG4
Length = 433
Score = 186 (70.5 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 55/183 (30%), Positives = 98/183 (53%)
Query: 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNL-PLVKS 215
L +Q ++DP++ ++AAR+V D +D+N GCP+ + GA L+ D L ++ +
Sbjct: 84 LILQLGSSDPQLAVDAARKVIDDVDGIDLNCGCPKNFSTHSGMGAELLKTPDKLCSILIN 143
Query: 216 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD- 274
LVEK+ + +SCKIR+F N + + + G S L +H RT ++ R D
Sbjct: 144 LVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGISNLTIHCRTPIMRN----RQDP 199
Query: 275 -WNAIKAVKNALR---IPVLANGNVRHMEDV---QKCLEETGCEGVLS---AESLLENPA 324
WN + + ++ + ++ NGN++++ D+ Q L + G G LS AE+ NP+
Sbjct: 200 VWNFLPKLIPIIQTAGVNLVINGNMQNVADLKNLQSALNDNG-GGKLSIMIAEAAEANPS 258
Query: 325 LFA 327
+F+
Sbjct: 259 VFS 261
Score = 100 (40.3 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAT 153
KL +APMV + ELP R+L RYG + +TP L + +S + N+E T
Sbjct: 7 KLCLAPMVRSGELPIRLLSLRYGCDLLWTPELVDKKILQSTRIINQELNT 56
>UNIPROTKB|F1NGP4 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AADN02072212 IPI:IPI00581852
Ensembl:ENSGALT00000002780 Uniprot:F1NGP4
Length = 630
Score = 243 (90.6 bits), Expect = 6.6e-18, P = 6.6e-18
Identities = 70/246 (28%), Positives = 119/246 (48%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRP--LF 161
KL +AP+ LPFR +C+R+GA+ M + T + ++ E+A K +F
Sbjct: 286 KLYLAPLTTCGNLPFRRICKRFGADVTCGEMA---VCTNLLQGQSSEWALLKRHHTEDIF 342
Query: 162 -VQFCANDPEILLNAARRVEPYCD--YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 218
VQ P+ + A + D +VDIN+GCP + + G LM + +V
Sbjct: 343 GVQLEGAFPDTMTKCAELLNQTIDVDFVDINVGCPIDLVYKKGGGCALMTRSNKFEQIVR 402
Query: 219 KLALNLNVPVSCKIR--VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 276
+ L+VP++ KIR V + K + + G S++ +HGR+R+++ + ADW+
Sbjct: 403 GMNSVLDVPLTVKIRTGVQEKMNVAHKIIPKIREWGASMVTLHGRSREQRYTRV--ADWD 460
Query: 277 AI-KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE-W 334
I + K A +P+ NG++ ED + ++ TG G++ A L P LF + W
Sbjct: 461 YIAECAKIASPMPLFGNGDILSYEDANQAMQ-TGVSGIMIARGALIKPWLFTEIKEQRHW 519
Query: 335 IVGSEE 340
+ S E
Sbjct: 520 DISSSE 525
>UNIPROTKB|Q8EFG7 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 227 (85.0 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 55/177 (31%), Positives = 92/177 (51%)
Query: 159 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
P+ VQ +P + NA R +E VD N GCP ++ R N GA L+ + +V
Sbjct: 64 PVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDIV 123
Query: 218 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
+ A+ PV+ KIR+ + + ++ A + +AG + LA+H R++ DG K A
Sbjct: 124 RAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSK--VDGYKPPAY 181
Query: 275 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331
W I V+ L IPV+ANG + + +D ++C++ TGC+ ++ + P L +T
Sbjct: 182 WEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIKT 238
>TIGR_CMR|SO_2006 [details] [associations]
symbol:SO_2006 "NifR3/Smm1 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 227 (85.0 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 55/177 (31%), Positives = 92/177 (51%)
Query: 159 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
P+ VQ +P + NA R +E VD N GCP ++ R N GA L+ + +V
Sbjct: 64 PVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDIV 123
Query: 218 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
+ A+ PV+ KIR+ + + ++ A + +AG + LA+H R++ DG K A
Sbjct: 124 RAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSK--VDGYKPPAY 181
Query: 275 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331
W I V+ L IPV+ANG + + +D ++C++ TGC+ ++ + P L +T
Sbjct: 182 WEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIKT 238
>MGI|MGI:2147092 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
MGI:MGI:2147092 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
HOGENOM:HOG000240610 HOVERGEN:HBG062413 OrthoDB:EOG4K6G43
EMBL:AY040840 EMBL:AK157702 EMBL:BC052481 IPI:IPI00129184
IPI:IPI00776080 RefSeq:NP_659107.2 UniGene:Mm.293973
ProteinModelPortal:Q91XI1 SMR:Q91XI1 STRING:Q91XI1
PhosphoSite:Q91XI1 PaxDb:Q91XI1 PRIDE:Q91XI1
Ensembl:ENSMUST00000007747 GeneID:224907 KEGG:mmu:224907
UCSC:uc008ddd.2 GeneTree:ENSGT00550000075134 InParanoid:Q91XI1
NextBio:377458 Bgee:Q91XI1 CleanEx:MM_DUS3L Genevestigator:Q91XI1
GermOnline:ENSMUSG00000007603 Uniprot:Q91XI1
Length = 637
Score = 239 (89.2 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 72/248 (29%), Positives = 119/248 (47%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED--RPLF 161
KL +AP+ LPFR +C+R+GA+ M + T + + E+A K +F
Sbjct: 293 KLYLAPLTTCGNLPFRRICKRFGADVTCGEMA---VCTNLLQGQMSEWALLKRHPCEDIF 349
Query: 162 -VQFCANDPEILLNAARRVEPYCD--YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 218
VQ P+ + A + D +VDIN+GCP + + G LM+ + +V
Sbjct: 350 GVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVR 409
Query: 219 KLALNLNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKKFRAD 274
+ L+VP++ K+R +Q+ + A L D G +L+ +HGR+R+++ + AD
Sbjct: 410 GVNGVLDVPLTVKMRT--GVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRL--AD 465
Query: 275 WNAIK-AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W I+ K A +P+ NG++ ED C +TG G++ A L P LF +
Sbjct: 466 WPYIEQCAKVASPMPLFGNGDILSFEDAN-CAMQTGVAGIMVARGALLKPWLFTEIKEQR 524
Query: 334 -WIVGSEE 340
W + S E
Sbjct: 525 HWDISSSE 532
>DICTYBASE|DDB_G0292686 [details] [associations]
symbol:dus3l "tRNA-dihydrouridine synthase 3-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
SMART:SM00356 dictyBase:DDB_G0292686 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:XP_629571.1
ProteinModelPortal:Q54CU9 STRING:Q54CU9 EnsemblProtists:DDB0238072
GeneID:8628832 KEGG:ddi:DDB_G0292686 KO:K05544 OMA:WGASAIT
ProtClustDB:CLSZ2495295 Uniprot:Q54CU9
Length = 671
Score = 239 (89.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 68/248 (27%), Positives = 119/248 (47%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCK----EDRP 159
+LI+AP+ LPFR +C+R GA+ M + E K E A K ED+
Sbjct: 325 QLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTK---SELALLKRHPCEDK- 380
Query: 160 LFVQFCANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ C + + + A +E D+VDIN GCP + GA LM+ V+ L+
Sbjct: 381 FGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPKKVEQLL 440
Query: 218 EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG----CSLLAVHGRTRDEKDGKKFRA 273
++ +L+ P + KIR+ + +D K++ G C++ +HGR+R ++ + A
Sbjct: 441 RGISSSLSCPTTIKIRIGKS-EDAPTAHKLIPSLGEWGACAV-TLHGRSRAQRYSRL--A 496
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA- 332
+W+ +K IP++ NG++ + +DV + + ++ A L P +F +
Sbjct: 497 NWDYVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGALIKPWIFTEIKEKR 556
Query: 333 EWIVGSEE 340
EW + + E
Sbjct: 557 EWDISASE 564
>RGD|1563228 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
RGD:1563228 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOVERGEN:HBG062413
EMBL:BC105780 IPI:IPI00373725 RefSeq:NP_001030095.1
UniGene:Rn.42187 ProteinModelPortal:Q3KRC5 PhosphoSite:Q3KRC5
PRIDE:Q3KRC5 GeneID:301122 KEGG:rno:301122 NextBio:648195
Genevestigator:Q3KRC5 Uniprot:Q3KRC5
Length = 640
Score = 235 (87.8 bits), Expect = 6.0e-17, P = 6.0e-17
Identities = 71/248 (28%), Positives = 121/248 (48%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED--RPLF 161
KL +AP+ LPFR +C+R+GA+ M + T + + E+A K +F
Sbjct: 296 KLYLAPLTTCGNLPFRRICKRFGADVTCGEMA---MCTNLLQGQMSEWALLKRHPCEDIF 352
Query: 162 -VQFCANDPEILLNAARRVEPYCD--YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 218
VQ P+ + A + D +VDIN+GCP + + G LM+ + +V
Sbjct: 353 GVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVR 412
Query: 219 KLALNLNVPVSCKIRVFPNLQDTIKYA-KMLEDA---GCSLLAVHGRTRDEKDGKKFRAD 274
+ L+VP++ K+R +Q+ + A ++L + G +L+ +HGR+R+++ + AD
Sbjct: 413 GMNEVLDVPLTVKMRT--GVQERVSLAHRLLPELRNWGVALVTLHGRSREQRYTRL--AD 468
Query: 275 WNAIK-AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W I+ K A +P+ NG++ ED C +TG G++ A L P LF +
Sbjct: 469 WPYIEQCAKVASPMPLFGNGDILSFEDAN-CAMQTGVAGIMVARGALLKPWLFTEIKEQR 527
Query: 334 -WIVGSEE 340
W + S E
Sbjct: 528 HWDISSSE 535
>FB|FBgn0032819 [details] [associations]
symbol:CG10463 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270
GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 EMBL:AY119278 ProteinModelPortal:Q8MRT5
SMR:Q8MRT5 STRING:Q8MRT5 PaxDb:Q8MRT5 PRIDE:Q8MRT5
FlyBase:FBgn0032819 InParanoid:Q8MRT5 OrthoDB:EOG49CNPV
ArrayExpress:Q8MRT5 Bgee:Q8MRT5 Uniprot:Q8MRT5
Length = 604
Score = 233 (87.1 bits), Expect = 9.1e-17, P = 9.1e-17
Identities = 71/275 (25%), Positives = 133/275 (48%)
Query: 72 TASSSLPSPRGYLSGEARAERAWAHWTKLG-RPKLIVAPMVDNSELPFRMLCRRYGAEAA 130
T S S P+ G ++ R H + R KL+++P+ LPFR +C+ +GA+
Sbjct: 225 TDSKSKPTATGCAIDDSAIGRDADHKPAVDFREKLVLSPLTTLGNLPFRRICKEFGADIT 284
Query: 131 YTPMLHSRIFTESEKYRNEEFATCK--EDRPLF-VQFCANDPEILLNAARRVEPYC--DY 185
M ++ K +E+A K + +F VQ C N+P +L AA+ + D+
Sbjct: 285 CGEMACAQPLL---KGMGQEWALTKRHQSEDVFGVQLCGNNPNMLNQAAQVIHETAQVDF 341
Query: 186 VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA-LNLNVPVSCKIR--VFPNLQDTI 242
+D+N+GCP + + G+ LM +++ V A L+ +P + K+R ++ +
Sbjct: 342 IDLNIGCPIDLIYQQGGGSALMRRTNILELTVRSCAALSDRLPFTVKMRTGIYADKSVAH 401
Query: 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK-AVKNALRIPVLANGNVRHMED- 300
+ ++E+ G S + +HGR+R+++ K A+W I+ A R+PV+ NG++ ED
Sbjct: 402 ELLPLVEEWGASAVTLHGRSREQRYTK--HANWAYIEECAAKAKRMPVIGNGDILSYEDY 459
Query: 301 VQKCLEETGCEGVLSAESLLENPALFAGFRTAE-W 334
+++ V+ L P +F + + W
Sbjct: 460 MERRTLAPHVSSVMIGRGALIKPWIFQEIKEKQAW 494
>UNIPROTKB|O53835 [details] [associations]
symbol:dus "Probable tRNA-dihydrouridine synthase"
species:1773 "Mycobacterium tuberculosis" [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IDA] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0050660 GO:GO:0019217 EMBL:BX842574
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:G70810
RefSeq:NP_215338.1 RefSeq:NP_335273.1 RefSeq:YP_006514173.1
ProteinModelPortal:O53835 SMR:O53835
EnsemblBacteria:EBMYCT00000002102 EnsemblBacteria:EBMYCT00000070313
GeneID:13318720 GeneID:885380 GeneID:926148 KEGG:mtc:MT0845
KEGG:mtu:Rv0823c KEGG:mtv:RVBD_0823c PATRIC:18123594
TubercuList:Rv0823c HOGENOM:HOG000217856 OMA:PIARKHI
ProtClustDB:CLSK871859 Uniprot:O53835
Length = 389
Score = 227 (85.0 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 92/331 (27%), Positives = 146/331 (44%)
Query: 99 KLGRPKLIVAPMVDNSELPFRMLCR-----RYGAEAA-YT-PMLHSRIFTESEKYRNEEF 151
+L P +++APM + + FR LCR + G + Y M+ +R E
Sbjct: 19 ELASP-VVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMT 77
Query: 152 ATCKEDRPLFVQFCANDPEILLNAARRV--EPYCDYVDINLGCP-QRIARRGNYGAFLMD 208
++ P +Q DP+ AAR + E D++D+N GCP ++ +RG GA L
Sbjct: 78 TFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGG-GAALPF 136
Query: 209 NLPLVKSLVE---KLALNLNVPVSCKIRV-FPNLQDT-IKYAKMLEDAGCSLLAVHGRTR 263
L +V + ++PV+ K R+ + T + ++ E G + +A+H RT
Sbjct: 137 KRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHARTA 196
Query: 264 DEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322
++ ADW I +K +R IPVL NG++ D + TGC+GV+ L
Sbjct: 197 AQRYSGT--ADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGR 254
Query: 323 PALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKLLG 379
P LFA A GS + + AD++ + L + R IR H+ L
Sbjct: 255 PWLFAELSAA--FTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYL- 311
Query: 380 EWFRIQPGVREDLNAQNRLTFEFLYNLVDRL 410
F +R L A + TF+ L L+DRL
Sbjct: 312 HGFPAGSALRRAL-AMVK-TFDELDCLLDRL 340
>UNIPROTKB|P33371 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U00007
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 PIR:C64982
RefSeq:NP_416645.1 RefSeq:YP_490379.1 ProteinModelPortal:P33371
SMR:P33371 DIP:DIP-12808N IntAct:P33371 PRIDE:P33371
EnsemblBacteria:EBESCT00000002162 EnsemblBacteria:EBESCT00000017846
GeneID:12931463 GeneID:945458 KEGG:ecj:Y75_p2102 KEGG:eco:b2140
PATRIC:32119623 EchoBASE:EB1957 EcoGene:EG12022
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI ProtClustDB:PRK10550
BioCyc:EcoCyc:EG12022-MONOMER BioCyc:ECOL316407:JW2128-MONOMER
BioCyc:MetaCyc:EG12022-MONOMER Genevestigator:P33371 Uniprot:P33371
Length = 315
Score = 218 (81.8 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 55/168 (32%), Positives = 88/168 (52%)
Query: 162 VQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 220
VQ P+ L NAAR VE VD+N GCP + GA L+ + L+ + +
Sbjct: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126
Query: 221 --ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
A+ ++PVS K+R+ + + + + A ++ AG + L VHGRT+ E+ + DW A
Sbjct: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRAEHIDWQA 185
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
I ++ L IPV+ANG + + Q+C+ +GC+ V+ L P L
Sbjct: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233
>UNIPROTKB|Q83D40 [details] [associations]
symbol:CBU_0904 "tRNA-dihydrouridine synthase"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 213 (80.0 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 77/305 (25%), Positives = 138/305 (45%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLFV 162
++ +APM+ ++ FRM R+ YT M+ + + +++R +++ E+ PL +
Sbjct: 30 RISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSP--EEHPLAL 87
Query: 163 QFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 221
Q +DP+ L AR E D +++N+GCP G +GA L+ LV V ++
Sbjct: 88 QVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMS 147
Query: 222 LNLNVPVSCKIRVFPNLQDTIK----YAKMLEDAGCSLLAVHGRTRDEK--DGKKFRA-- 273
+N+PVS K R + QD+ + + K + +AGC + +H R K + R
Sbjct: 148 AEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVP 207
Query: 274 --DWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330
+ + +K + ++ NG ++ +E + L E +GV+ NP A F
Sbjct: 208 PLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREV--DGVMIGREAYANPLFCAAFD 265
Query: 331 TAEWIVGSEEIS--KDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKLLGEWFRIQ 385
V S ++ K L +L+ YL K VP + H++ L F+ Q
Sbjct: 266 DLSKPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGVPLYAMTRHLNGL----FQGQ 321
Query: 386 PGVRE 390
PG ++
Sbjct: 322 PGAKK 326
>TIGR_CMR|CBU_0904 [details] [associations]
symbol:CBU_0904 "TIM-barrel protein, yjbN family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 213 (80.0 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 77/305 (25%), Positives = 138/305 (45%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLFV 162
++ +APM+ ++ FRM R+ YT M+ + + +++R +++ E+ PL +
Sbjct: 30 RISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSP--EEHPLAL 87
Query: 163 QFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 221
Q +DP+ L AR E D +++N+GCP G +GA L+ LV V ++
Sbjct: 88 QVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMS 147
Query: 222 LNLNVPVSCKIRVFPNLQDTIK----YAKMLEDAGCSLLAVHGRTRDEK--DGKKFRA-- 273
+N+PVS K R + QD+ + + K + +AGC + +H R K + R
Sbjct: 148 AEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVP 207
Query: 274 --DWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330
+ + +K + ++ NG ++ +E + L E +GV+ NP A F
Sbjct: 208 PLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREV--DGVMIGREAYANPLFCAAFD 265
Query: 331 TAEWIVGSEEIS--KDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKLLGEWFRIQ 385
V S ++ K L +L+ YL K VP + H++ L F+ Q
Sbjct: 266 DLSKPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGVPLYAMTRHLNGL----FQGQ 321
Query: 386 PGVRE 390
PG ++
Sbjct: 322 PGAKK 326
>POMBASE|SPBC1709.06 [details] [associations]
symbol:dus2 "tRNA dihydrouridine synthase Dus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=ISO] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PomBase:SPBC1709.06 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CU329671 GenomeReviews:CU329671_GR
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05543 PIR:T39634
RefSeq:NP_595439.1 ProteinModelPortal:O74731 STRING:O74731
EnsemblFungi:SPBC1709.06.1 GeneID:2540200 KEGG:spo:SPBC1709.06
OMA:LVERICD OrthoDB:EOG4PG98M NextBio:20801332 Uniprot:O74731
Length = 479
Score = 186 (70.5 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 49/178 (27%), Positives = 86/178 (48%)
Query: 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN----LP 211
E L Q + PE+ + AA+ V +D+N GCP+ + GA L+ N +
Sbjct: 80 EANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVHAGMGAGLLKNQDRLVS 139
Query: 212 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 271
++ +LV ++ + +SCKIR+ +DT+K + + D G + VH RT ++ +
Sbjct: 140 ILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRAITVHCRTTPMRNTEP- 198
Query: 272 RADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
AD + + + R + +L NG+V D +E+ G +GVL A + N + F
Sbjct: 199 -ADRSYLSEIVGVCRNKDVSILVNGDVLSYNDGLDVIEKYGVDGVLIARAAERNVSCF 255
Score = 74 (31.1 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTP 133
K+ +APMV ELP R+L RYGA + P
Sbjct: 9 KVCLAPMVRIGELPMRLLALRYGANLVWGP 38
>UNIPROTKB|Q607T6 [details] [associations]
symbol:MCA1669 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:YP_114112.1
ProteinModelPortal:Q607T6 GeneID:3102115 KEGG:mca:MCA1669
PATRIC:22607174 Uniprot:Q607T6
Length = 360
Score = 204 (76.9 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 61/239 (25%), Positives = 113/239 (47%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPL 160
R +L VAPM+D ++ R R YT M+ + ++ R F + PL
Sbjct: 27 RHRLSVAPMMDWTDRHCRFFLRLISRHTLLYTEMVTTAAILHGDRERLLGFHPA--EHPL 84
Query: 161 FVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219
+Q +DPE L A+ E D V++N+GCP + G +GA LM V V
Sbjct: 85 AIQLGGSDPEALAECAKIAEFRGFDEVNLNVGCPSPRVQTGRFGACLMAEPERVADCVRA 144
Query: 220 LALNLNVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTR-----DEKDGKK 270
+ ++VPV+ K R+ + +D + + ++ +AGC VH R K+ ++
Sbjct: 145 MCEAVSVPVTVKTRIGIDDRDSYEDLLHFVTIVAEAGCRTFIVHARKAWLQGLSPKENRQ 204
Query: 271 FRA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
++ ++ +K+ L + ++ NG ++ +++ ++ L + C+GV+ + NP L A
Sbjct: 205 TPPLRYDVVRRLKSELPELAIVLNGGIQTLDEAERHL--SWCDGVMIGRAAYHNPYLLA 261
>DICTYBASE|DDB_G0277081 [details] [associations]
symbol:DDB_G0277081 "tRNA-dihydrouridine synthase A"
species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
dictyBase:DDB_G0277081 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000019 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 RefSeq:XP_642936.1 ProteinModelPortal:Q86L21
EnsemblProtists:DDB0217898 GeneID:8620805 KEGG:ddi:DDB_G0277081
InParanoid:Q86L21 OMA:PIVAQFF Uniprot:Q86L21
Length = 392
Score = 202 (76.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 71/248 (28%), Positives = 117/248 (47%)
Query: 97 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKY-RNEEFATCK 155
W KL +P +APM D +++ FR L A P + F ++ RN E K
Sbjct: 5 WNKLSKPIFSLAPMADVTDISFRFLL----ANCMGKPNVIFNEFVSADGLARNREALIDK 60
Query: 156 -----EDRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR--IARRGNYGAFLM 207
+++P+ QF N PE +A+ E D VDIN+GCP R ++ + GA L+
Sbjct: 61 LGYSTQEKPIVAQFFGNKPEYFYESAKIANELGYDGVDINMGCPSRKVLSPKQASGAALI 120
Query: 208 DNLPLVKSLVE--KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 265
N L K +V+ K ALN PVS K R+ + + ++ ++ ++ + L +H RT+
Sbjct: 121 TNPSLAKEIVKITKEALNFEKPVSVKTRIGFDKIEIDEWIPLILESEPACLTLHLRTK-- 178
Query: 266 KDGKKFRADW-----NAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAES 318
K+ A W + + ++N + L NG+V E + + G +GV+ +
Sbjct: 179 KELSLVPAHWEHQVLDRVVELRNQISPNTLLVGNGDVETYEQGIDYINQFGIDGVMIGRA 238
Query: 319 LLENPALF 326
+ NP LF
Sbjct: 239 VYGNPWLF 246
>UNIPROTKB|Q9KT00 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05541 OMA:FYHVARI PIR:D82241 RefSeq:NP_230750.1
ProteinModelPortal:Q9KT00 DNASU:2614375 GeneID:2614375
KEGG:vch:VC1105 PATRIC:20081304 ProtClustDB:CLSK874217
Uniprot:Q9KT00
Length = 323
Score = 195 (73.7 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 51/172 (29%), Positives = 84/172 (48%)
Query: 159 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
P+ VQ DP + NA R E +D+N GCP ++ + GA L+ + L+ +V
Sbjct: 64 PVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQVV 123
Query: 218 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-KKFRA 273
+ A+ ++PVS KIR+ + + +D + + A L VH RT+ G K
Sbjct: 124 KACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTK--AGGYKASEI 181
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
W+ I ++ IP++ANG V + D Q C++ TG + ++ L P L
Sbjct: 182 KWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNL 233
>TIGR_CMR|VC_1105 [details] [associations]
symbol:VC_1105 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05541 OMA:FYHVARI
PIR:D82241 RefSeq:NP_230750.1 ProteinModelPortal:Q9KT00
DNASU:2614375 GeneID:2614375 KEGG:vch:VC1105 PATRIC:20081304
ProtClustDB:CLSK874217 Uniprot:Q9KT00
Length = 323
Score = 195 (73.7 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 51/172 (29%), Positives = 84/172 (48%)
Query: 159 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
P+ VQ DP + NA R E +D+N GCP ++ + GA L+ + L+ +V
Sbjct: 64 PVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQVV 123
Query: 218 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-KKFRA 273
+ A+ ++PVS KIR+ + + +D + + A L VH RT+ G K
Sbjct: 124 KACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTK--AGGYKASEI 181
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
W+ I ++ IP++ANG V + D Q C++ TG + ++ L P L
Sbjct: 182 KWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNL 233
>UNIPROTKB|Q9KUX9 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 194 (73.4 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 73/301 (24%), Positives = 134/301 (44%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLFV 162
+L VAPM+D ++ R R A+ YT M+ + R + A +E+ P+ +
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHG---RGDFLAYNQEEHPVAL 62
Query: 163 QFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 221
QF ++P+ L + A+ E D +++N+GCP + G +GA LM LV V +
Sbjct: 63 QFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMR 122
Query: 222 LNLNVPVSCKIRVFPNLQDTIKY-----AKMLEDAGCSLLAVHGRTR-----DEKDGKKF 271
+++PV+ K R+ + QD+ ++ A + E GC +H R K+ ++
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 272 RA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
D+ +K + + NG V+ +E+ + L+ +GV+ +NP L A
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHL--DGVMIGREAYQNPYLLA-- 238
Query: 330 RTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVR 389
+ I G E K ++ ++ E + E+ + +LG F+ PG R
Sbjct: 239 EVDQQIFGLETPVKK----RSQVIHEMMPYIERELSQGTHLGHMTRHMLG-LFQNMPGAR 293
Query: 390 E 390
+
Sbjct: 294 Q 294
>TIGR_CMR|VC_0379 [details] [associations]
symbol:VC_0379 "TIM-barrel protein, yjbN family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 194 (73.4 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 73/301 (24%), Positives = 134/301 (44%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLFV 162
+L VAPM+D ++ R R A+ YT M+ + R + A +E+ P+ +
Sbjct: 6 RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHG---RGDFLAYNQEEHPVAL 62
Query: 163 QFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 221
QF ++P+ L + A+ E D +++N+GCP + G +GA LM LV V +
Sbjct: 63 QFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMR 122
Query: 222 LNLNVPVSCKIRVFPNLQDTIKY-----AKMLEDAGCSLLAVHGRTR-----DEKDGKKF 271
+++PV+ K R+ + QD+ ++ A + E GC +H R K+ ++
Sbjct: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
Query: 272 RA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
D+ +K + + NG V+ +E+ + L+ +GV+ +NP L A
Sbjct: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHL--DGVMIGREAYQNPYLLA-- 238
Query: 330 RTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVR 389
+ I G E K ++ ++ E + E+ + +LG F+ PG R
Sbjct: 239 EVDQQIFGLETPVKK----RSQVIHEMMPYIERELSQGTHLGHMTRHMLG-LFQNMPGAR 293
Query: 390 E 390
+
Sbjct: 294 Q 294
>SGD|S000005298 [details] [associations]
symbol:SMM1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IMP;IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA;IGI] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000005298 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BK006947 EMBL:Z71631 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OrthoDB:EOG4PG98M EMBL:X91816
EMBL:Z71630 PIR:S63345 RefSeq:NP_014412.1 ProteinModelPortal:P53720
DIP:DIP-4102N MINT:MINT-551094 STRING:P53720 PaxDb:P53720
PeptideAtlas:P53720 EnsemblFungi:YNR015W GeneID:855749
KEGG:sce:YNR015W CYGD:YNR015w OMA:VEESMFY
BioCyc:MetaCyc:MONOMER-16677 NextBio:980160 Genevestigator:P53720
GermOnline:YNR015W Uniprot:P53720
Length = 384
Score = 160 (61.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 52/180 (28%), Positives = 86/180 (47%)
Query: 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNLPL 212
E L Q + P + AA +V +DIN GCP+ + G+ L+ D L L
Sbjct: 81 ESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSIHSGMGSALLRTPDTLCL 140
Query: 213 V-KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 271
+ K LV+ + + P+S KIR+ QDT++ K L G + L VH R + ++ ++
Sbjct: 141 ILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGITNLTVHCRKTEMRNREQP 200
Query: 272 RADWNA-IKAVKNALRIPVLANGNVR---HMEDVQ-KCLEETGCEGVLSAESLLENPALF 326
D+ A I + A + ++ NG +R H D+Q + T G++ AE +P +F
Sbjct: 201 ITDYIAEIYEICQANNVSLIVNGAIRDRSHFHDLQANHWKNTNIGGMI-AECAERDPTVF 259
Score = 76 (31.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQ 163
KL++APMV ELP R++ +GA+ ++P + + + + N T P VQ
Sbjct: 7 KLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVVPSKVQ 66
Query: 164 FCANDPEILL 173
PE L+
Sbjct: 67 ---TRPETLV 73
>UNIPROTKB|P32695 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U00006 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 RefSeq:NP_418473.2 RefSeq:YP_492192.1
ProteinModelPortal:P32695 SMR:P32695 PRIDE:P32695
EnsemblBacteria:EBESCT00000004365 EnsemblBacteria:EBESCT00000018223
GeneID:12930614 GeneID:948558 KEGG:ecj:Y75_p3936 KEGG:eco:b4049
PATRIC:32123637 EchoBASE:EB1876 EcoGene:EG11932
HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815
BioCyc:EcoCyc:EG11932-MONOMER BioCyc:ECOL316407:JW5950-MONOMER
BioCyc:MetaCyc:EG11932-MONOMER Genevestigator:P32695
TIGRFAMs:TIGR00742 Uniprot:P32695
Length = 330
Score = 185 (70.2 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 64/268 (23%), Positives = 118/268 (44%)
Query: 91 ERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNE 149
E+ HW+ GR VAPM+D ++ R R YT M+ + + +
Sbjct: 3 EKTDVHWS--GR--FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGD 55
Query: 150 EFATCKEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMD 208
A +E+ P+ +Q +DP L A+ E D +++N+GCP + G +GA LM
Sbjct: 56 YLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMG 115
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA----KMLEDAG-CSLLAVHGRTR 263
N LV V+ + +++PV+ K R+ + QD+ ++ + G C + +H R
Sbjct: 116 NAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175
Query: 264 -----DEKDGKKFRA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316
K+ ++ D+ + +K + + NG ++ +E+ + L+ +GV+
Sbjct: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVG 233
Query: 317 ESLLENPALFAGFRTAEWIVGSEEISKD 344
+NP + A I GS + D
Sbjct: 234 REAYQNPGILAAVDRE--IFGSSDTDAD 259
>UNIPROTKB|I3L4Y9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 GO:GO:0005739
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000575677 Bgee:I3L4Y9 Uniprot:I3L4Y9
Length = 158
Score = 167 (63.8 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 46/146 (31%), Positives = 70/146 (47%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE------------- 150
KLI+APMV LP R+L YGA+ Y L + ++ NE
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 151 -FATC-KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
F TC +E + Q +D E L AR VE +D+N+GCP++ + +G GA L+
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 132
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRV 234
+ ++ ++ L PV+CKIR+
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRI 158
>UNIPROTKB|Q8EAJ0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004653 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 183 (69.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 61/236 (25%), Positives = 107/236 (45%)
Query: 107 VAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
+APM+D ++ +R R A A YT M+ + R + +E+ PL +Q
Sbjct: 18 IAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHG---RGDYLTYNQEEHPLALQLG 74
Query: 166 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL 224
++P L A+ E D V++N+GCP + G +GA LM LV V+ + +
Sbjct: 75 GSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVV 134
Query: 225 NVPVSCKIRVFPNLQDTIKYAKMLEDA----GCSLLAVHGRTR-----DEKDGKKFRA-D 274
++PV+ K R+ + QD+ ++ D GC +H R K+ ++ D
Sbjct: 135 DIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLD 194
Query: 275 WNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
++ + +K AL I + NG + +E Q L+ +GV+ +NP + A
Sbjct: 195 YDRVYQLKRDYPALNISI--NGGITSLEQAQTHLQHL--DGVMVGREAYQNPYMLA 246
>TIGR_CMR|SO_3912 [details] [associations]
symbol:SO_3912 "TIM-barrel protein, yjbN family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 183 (69.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 61/236 (25%), Positives = 107/236 (45%)
Query: 107 VAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
+APM+D ++ +R R A A YT M+ + R + +E+ PL +Q
Sbjct: 18 IAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHG---RGDYLTYNQEEHPLALQLG 74
Query: 166 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL 224
++P L A+ E D V++N+GCP + G +GA LM LV V+ + +
Sbjct: 75 GSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVV 134
Query: 225 NVPVSCKIRVFPNLQDTIKYAKMLEDA----GCSLLAVHGRTR-----DEKDGKKFRA-D 274
++PV+ K R+ + QD+ ++ D GC +H R K+ ++ D
Sbjct: 135 DIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLD 194
Query: 275 WNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
++ + +K AL I + NG + +E Q L+ +GV+ +NP + A
Sbjct: 195 YDRVYQLKRDYPALNISI--NGGITSLEQAQTHLQHL--DGVMVGREAYQNPYMLA 246
>ASPGD|ASPL0000038251 [details] [associations]
symbol:AN2967 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BN001306 EMBL:AACD01000051 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000195580
KO:K05543 OrthoDB:EOG4PG98M RefSeq:XP_660571.1
ProteinModelPortal:Q5B913 STRING:Q5B913
EnsemblFungi:CADANIAT00010113 GeneID:2873785 KEGG:ani:AN2967.2
OMA:KEMIMHY Uniprot:Q5B913
Length = 437
Score = 148 (57.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 56/225 (24%), Positives = 101/225 (44%)
Query: 142 ESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGN 201
ES YR + +E L Q +PE+ + A + V + +D+N GCP+ + G
Sbjct: 87 ESVIYRLDP---AREKGKLIFQMGTANPELAVQAGKLVAADVNGIDVNSGCPKPFSTSGG 143
Query: 202 YGAFLM---DNL-PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257
GA L+ D L ++++LV+++ + +S KIR+ + T L G + L
Sbjct: 144 MGAALLRTPDKLVSILEALVKEVGEPYQIGISVKIRLLETPELTESLVSRLVRTGITGLT 203
Query: 258 VHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316
+H RT + ++ R I + + + + NG+V ++ ++E G +G + A
Sbjct: 204 IHCRTTPMRPRERAIRDQLRMIVSTCHNAGVACIMNGDVTSRDEALALMQEYGADGAMIA 263
Query: 317 ESLLENPALFAGFRTAEWIVGSEEISKDGNLDQ-ADLLVEYLKLC 360
+ N + F SE DG L +++ EY+KLC
Sbjct: 264 TAAEANSSCFR----------SEA---DGGLAPWREVVHEYVKLC 295
Score = 82 (33.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTP 133
R K+++APMV + ELP R+L +YGA+ + P
Sbjct: 18 RGKVVLAPMVRSGELPSRLLALKYGADLCWGP 49
>UNIPROTKB|Q0C5H0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISS] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000158 GenomeReviews:CP000158_GR eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_759023.1 ProteinModelPortal:Q0C5H0 STRING:Q0C5H0
GeneID:4288047 KEGG:hne:HNE_0293 PATRIC:32213376
BioCyc:HNEP228405:GI69-337-MONOMER Uniprot:Q0C5H0
Length = 328
Score = 179 (68.1 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 60/233 (25%), Positives = 105/233 (45%)
Query: 107 VAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC 165
VAPM+D ++ R R A +T M+ + ++ R F+ + PL +Q
Sbjct: 11 VAPMMDWTDRHCRAFHRTLTKRALLWTEMVTADAVIHGDRQRLIGFSDV--EHPLVLQLG 68
Query: 166 ANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL 224
++P L AAR E Y D V++N GCP + G +GA LM LV V + +
Sbjct: 69 GSEPGKLAEAARIAEGYGYDEVNLNCGCPSERVQSGAFGACLMAEPDLVADCVAAMRAAV 128
Query: 225 NVPVSCKIRV----FPNLQDTIKYAKMLEDAGCSLLAVHGRTR-----DEKDGKKFRA-D 274
++PV+ K R+ P + + + + AGCS+ VH R K+ ++ D
Sbjct: 129 SIPVTVKNRIAIDDLPARETLFTFIEKVSVAGCSVFTVHARKAWLKGLSPKENREVPPLD 188
Query: 275 WNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGC-EGVLSAESLLENPAL 325
+ + +K A + ++ NG + + +C + G +GV+ + + P L
Sbjct: 189 YGLVAELKTARPDLTIILNGGIA---TIDQCRDHIGVFDGVMLGRAAYQTPGL 238
>UNIPROTKB|Q48A03 [details] [associations]
symbol:CPS_0353 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 172 (65.6 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 66/268 (24%), Positives = 122/268 (45%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNE-EFATCKE-DRPLF 161
KL VAPM+D ++ R Y +T +L++ + T R + ++ + + + PL
Sbjct: 19 KLSVAPMLDWTDKHSRYF---YRLMTQHT-VLYTEMVTTGAILRGKGDYLSYNDAEHPLV 74
Query: 162 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 220
+Q +D + + A+ E Y D V+IN+GCP + G +GA LM LV V ++
Sbjct: 75 LQLGGSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQM 134
Query: 221 ALNLNVPVSCKIRVFPNLQDTIKYAK-MLED---AGCSLLAVHGRTR-----DEKDGKKF 271
N+PV+ K R+ + D+ ++ +E+ A C +H R K +
Sbjct: 135 QSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPKQNRDV 194
Query: 272 RA-DWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
D++ + +KN + + V NG ++ + + L+ +GV+ + +P + A
Sbjct: 195 PPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQHI--DGVMIGREIYNSPYMLADA 252
Query: 330 RTAEWIVGSEEISKDGNLDQADLLVEYL 357
I S+ I K + DL+V Y+
Sbjct: 253 DNE--IYQSDTI-KLSRSEVIDLMVPYI 277
>TIGR_CMR|CPS_0353 [details] [associations]
symbol:CPS_0353 "TIM-barrel protein, yjbN family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 172 (65.6 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 66/268 (24%), Positives = 122/268 (45%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNE-EFATCKE-DRPLF 161
KL VAPM+D ++ R Y +T +L++ + T R + ++ + + + PL
Sbjct: 19 KLSVAPMLDWTDKHSRYF---YRLMTQHT-VLYTEMVTTGAILRGKGDYLSYNDAEHPLV 74
Query: 162 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 220
+Q +D + + A+ E Y D V+IN+GCP + G +GA LM LV V ++
Sbjct: 75 LQLGGSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQM 134
Query: 221 ALNLNVPVSCKIRVFPNLQDTIKYAK-MLED---AGCSLLAVHGRTR-----DEKDGKKF 271
N+PV+ K R+ + D+ ++ +E+ A C +H R K +
Sbjct: 135 QSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPKQNRDV 194
Query: 272 RA-DWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
D++ + +KN + + V NG ++ + + L+ +GV+ + +P + A
Sbjct: 195 PPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQHI--DGVMIGREIYNSPYMLADA 252
Query: 330 RTAEWIVGSEEISKDGNLDQADLLVEYL 357
I S+ I K + DL+V Y+
Sbjct: 253 DNE--IYQSDTI-KLSRSEVIDLMVPYI 277
>TIGR_CMR|SPO_2374 [details] [associations]
symbol:SPO_2374 "tRNA-dihydrouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_167596.1 ProteinModelPortal:Q5LQV9 GeneID:3194172
KEGG:sil:SPO2374 PATRIC:23378123 Uniprot:Q5LQV9
Length = 344
Score = 172 (65.6 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 60/236 (25%), Positives = 107/236 (45%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLFV 162
++ APM+D ++ R L R + YT M+ + E++ E+ P+ +
Sbjct: 12 RMSCAPMMDWTDRHCRYLHRLLSRQTLLYTEMVTAPALVRGGALHLLEYSV--EEHPVAL 69
Query: 163 QFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL- 220
Q +DPE L AAR E D +++N GCP + G +GA LM + LV V +
Sbjct: 70 QLGGSDPEELAQAARLGAEAGYDEINLNCGCPSDRVQSGTFGAVLMKHPGLVADCVTAMR 129
Query: 221 -ALNLNVPVSCKIRVFPNLQDTI--KYAKMLEDAGCSLLAVHGRTR-----DEKDGKKFR 272
A+++ V V C+I V +T+ ++ + + AGC + +H R K+ +
Sbjct: 130 EAVDVEVTVKCRIGVDDQDPETVLPEFLEQIAGAGCQRVIIHARKAWLQGLSPKENRDIP 189
Query: 273 A-DWNAIKAVKNALRIP---VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324
D++ + +K R P + NG + + + L+ G +GV+ + PA
Sbjct: 190 PLDYDLVHRMK--ARFPGMHISINGGIDTLAAARAHLD-AGLDGVMIGRAAYHQPA 242
>UNIPROTKB|Q81ZD5 [details] [associations]
symbol:BAS0319 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 59/241 (24%), Positives = 108/241 (44%)
Query: 97 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEE--FAT 153
W L RP ++APM D +++ FR + G + +T +S + E ++
Sbjct: 6 WRDLPRPFFVLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSDSYCHPEGMKSVRGRLIF 65
Query: 154 CKEDRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLP 211
++++P+ ++PE + E +DIN+GCP +A RG G+ L+
Sbjct: 66 TEDEQPMVAHIWGDNPEYFRQMSIGMAELGFKGIDINMGCPVPNVASRGK-GSGLILRPD 124
Query: 212 LVKSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 270
+ L++ +PVS K R+ F L + + + + L++H RTR+E +
Sbjct: 125 VAAELIQAAKAG-GLPVSVKTRLGFKELSEWEDWLTHIFKQDIANLSIHLRTREEMS--Q 181
Query: 271 FRADWNAIKAVKNAL-RI-P---VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
A W I +K RI P + NG++ + + E+ G +GV+ + +NP
Sbjct: 182 VDAHWELIPEIKKLRDRIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFKNPFA 241
Query: 326 F 326
F
Sbjct: 242 F 242
>TIGR_CMR|BA_0334 [details] [associations]
symbol:BA_0334 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 59/241 (24%), Positives = 108/241 (44%)
Query: 97 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEE--FAT 153
W L RP ++APM D +++ FR + G + +T +S + E ++
Sbjct: 6 WRDLPRPFFVLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSDSYCHPEGMKSVRGRLIF 65
Query: 154 CKEDRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLP 211
++++P+ ++PE + E +DIN+GCP +A RG G+ L+
Sbjct: 66 TEDEQPMVAHIWGDNPEYFRQMSIGMAELGFKGIDINMGCPVPNVASRGK-GSGLILRPD 124
Query: 212 LVKSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 270
+ L++ +PVS K R+ F L + + + + L++H RTR+E +
Sbjct: 125 VAAELIQAAKAG-GLPVSVKTRLGFKELSEWEDWLTHIFKQDIANLSIHLRTREEMS--Q 181
Query: 271 FRADWNAIKAVKNAL-RI-P---VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
A W I +K RI P + NG++ + + E+ G +GV+ + +NP
Sbjct: 182 VDAHWELIPEIKKLRDRIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFKNPFA 241
Query: 326 F 326
F
Sbjct: 242 F 242
>UNIPROTKB|Q884G7 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_791948.1 ProteinModelPortal:Q884G7 GeneID:1183773
KEGG:pst:PSPTO_2126 PATRIC:19995530
BioCyc:PSYR223283:GJIX-2167-MONOMER Uniprot:Q884G7
Length = 336
Score = 159 (61.0 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 66/251 (26%), Positives = 111/251 (44%)
Query: 96 HWTKLGRPKLI-VAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFAT 153
H T+ G + VAPM+D ++ R R ++A YT M+ + ++ E F
Sbjct: 10 HSTRPGLSRRFSVAPMMDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDR---ERFLR 66
Query: 154 CKE-DRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLP 211
E + PL +Q + L AR E D V++N+GCP + GA LM +
Sbjct: 67 HDETEHPLALQLGGSTAAGLAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQ 126
Query: 212 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE------DAGCSLLAVHGRT--- 262
LV V+ + + +PV+ K R+ N +D+ YA++ + DAGC VH R
Sbjct: 127 LVADCVKAMRDAVGIPVTVKHRIGINGRDS--YAELCDFVGTVHDAGCQSFTVHARIAIL 184
Query: 263 -----RDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316
++ +D R D + +K + ++ NG ++ +E + L+ +GV+
Sbjct: 185 EGLSPKENRDIPPLRYD--VVAQLKTDFPELEIVLNGGIKTLEQCSEHLQTF--DGVMLG 240
Query: 317 ESLLENPALFA 327
NP L A
Sbjct: 241 REAYHNPYLLA 251
>TAIR|locus:2087408 [details] [associations]
symbol:AT3G63510 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016556 "mRNA modification" evidence=RCA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.20.20.70
GO:GO:0050660 UniGene:At.43820 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 EMBL:BT000879
IPI:IPI00546722 RefSeq:NP_567149.2 ProteinModelPortal:Q8H128
SMR:Q8H128 EnsemblPlants:AT3G63510.1 GeneID:825526
KEGG:ath:AT3G63510 TAIR:At3g63510 InParanoid:Q8H128 OMA:SPTRHFI
PhylomeDB:Q8H128 ProtClustDB:CLSN2686569 ArrayExpress:Q8H128
Genevestigator:Q8H128 Uniprot:Q8H128
Length = 419
Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 68/265 (25%), Positives = 111/265 (41%)
Query: 103 PKLIVAPMVDNSELPFRMLCRRYGAEA-AYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
P VAPM+D ++ +R L R A YT M+ + + + A + P+
Sbjct: 52 PSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIV 111
Query: 162 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQ-RIARRGNYGAFLMDNLPLVKSLVEK 219
+Q ++ E L AA+ + Y D +++N GCP ++A G +G LM LV +
Sbjct: 112 LQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSA 171
Query: 220 LALNLNVPVSCKIRV-------FPNLQDTIKYAKMLEDAGCSLLAVHGRTR-----DEKD 267
+A N NVPV+ K R+ + L D I L + VH R D
Sbjct: 172 IAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFI--VHSRKALLGGISPAD 229
Query: 268 GKKFRA-DWNAIKA-VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
++ + A V++ + NG + + V L+E G GV+ + NP
Sbjct: 230 NRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKE-GAHGVMVGRAAYNNPWQ 288
Query: 326 FAG-FRTAEWIVGSEEISKDGNLDQ 349
G TA + V S +++ L+Q
Sbjct: 289 TLGQVDTAVYGVPSSGLTRRQVLEQ 313
>GENEDB_PFALCIPARUM|PFI0920c [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 157 (60.3 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 46/166 (27%), Positives = 77/166 (46%)
Query: 103 PKLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
P + VAPM++ + FR + R A +T M+ + E + P+
Sbjct: 198 PFIQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIV 257
Query: 162 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQ-RIARRGNYGAFLMDNLPLVKSLVEK 219
Q D + AA VE D ++IN+GCP ++A +G +GA LM N V+++V +
Sbjct: 258 CQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYE 317
Query: 220 LALNLNVPVSCKIRVFPNLQDTIKYAKM----LEDAGCSLLAVHGR 261
+ + +PV+ KIR + D+ + K + GC+ VH R
Sbjct: 318 IKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHAR 363
>UNIPROTKB|Q8I2W5 [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 157 (60.3 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 46/166 (27%), Positives = 77/166 (46%)
Query: 103 PKLIVAPMVDNSELPFRMLCRRYGAEAA-YTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
P + VAPM++ + FR + R A +T M+ + E + P+
Sbjct: 198 PFIQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIV 257
Query: 162 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQ-RIARRGNYGAFLMDNLPLVKSLVEK 219
Q D + AA VE D ++IN+GCP ++A +G +GA LM N V+++V +
Sbjct: 258 CQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYE 317
Query: 220 LALNLNVPVSCKIRVFPNLQDTIKYAKM----LEDAGCSLLAVHGR 261
+ + +PV+ KIR + D+ + K + GC+ VH R
Sbjct: 318 IKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHAR 363
>SGD|S000004393 [details] [associations]
symbol:DUS3 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS;IMP] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002943 "tRNA dihydrouridine synthesis" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 SGD:S000004393 GO:GO:0005634 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:BK006945 EMBL:U19729 EMBL:Z18944 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 KO:K05544 HOGENOM:HOG000240610
GeneTree:ENSGT00550000075134 OrthoDB:EOG4M950K OMA:PWIFEEV
PIR:S55957 RefSeq:NP_013505.4 RefSeq:NP_013508.3
ProteinModelPortal:Q06053 SMR:Q06053 DIP:DIP-4469N MINT:MINT-473573
STRING:Q06053 PaxDb:Q06053 PeptideAtlas:Q06053 EnsemblFungi:YLR401C
GeneID:851117 GeneID:851120 KEGG:sce:YLR401C KEGG:sce:YLR404W
BioCyc:MetaCyc:MONOMER-16678 NextBio:967836 Genevestigator:Q06053
GermOnline:YLR401C Uniprot:Q06053
Length = 668
Score = 148 (57.2 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 52/196 (26%), Positives = 93/196 (47%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCK---EDRPL 160
K IV+P+ LP+R L R+ GA+ Y+ M + + N E+A K + P
Sbjct: 294 KKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGT---NSEWALPKAHTSEFPG 350
Query: 161 F-VQF-CANDPEILLNAARRVEPYCDYVDINL--GCPQRIARRGNYGAFLMDN-LPLVKS 215
F VQ C+ + A + +INL GCP + R G+ L+DN +++
Sbjct: 351 FGVQVACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLLYRQGSGSALLDNPARMIRC 410
Query: 216 LVEKLALNLNVPVSCKIRV-----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 270
L ++ ++P++ KIR P + +K +++ + + + +HGR+R ++ K
Sbjct: 411 LNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVK--RLVNETDVAAITLHGRSRQQRYTKS 468
Query: 271 FRADWNAIKAVKNALR 286
ADW+ + V + LR
Sbjct: 469 --ADWDYVSQVADTLR 482
Score = 51 (23.0 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 286 RIPVLANGNVRHMEDVQKCLE-ETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKD 344
RI + NG+V + ED + L + V+ A L P +F + +++ + D
Sbjct: 503 RIQFVGNGDVNNFEDWYRYLNGNENIDSVMVARGALIKPWIFEEVESQQYLDKTSTERLD 562
Query: 345 GNLDQADLLVEY 356
D A +E+
Sbjct: 563 ILRDYAQFSMEH 574
>UNIPROTKB|A4RLF4 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 GO:GO:0005634
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:CM001232 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
OrthoDB:EOG4M950K RefSeq:XP_003714097.1 ProteinModelPortal:A4RLF4
STRING:A4RLF4 EnsemblFungi:MGG_01205T0 GeneID:2679761
KEGG:mgr:MGG_01205 Uniprot:A4RLF4
Length = 739
Score = 114 (45.2 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 181 PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL-ALNLNVPVSCKIRV----- 234
P+ +D+N GCP + + G+ L++ ++ ++ + A++ VP++CK+R+
Sbjct: 431 PHLRLIDLNCGCPIDMIYKAGAGSALLEQHNKIERIIRGMNAVSGEVPITCKLRIGVKEN 490
Query: 235 FP----NLQDTI----KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
P N++ + + L GC+ + +HGRTR ++ K ADW I
Sbjct: 491 HPLAKKNIERAVFGSPDFRNQLGAPGCAAITLHGRTRQQRYKKP--ADWGYI 540
Score = 82 (33.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 27/95 (28%), Positives = 44/95 (46%)
Query: 101 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCK----E 156
GR ++AP+ LPFR LC GA+ Y+ M ++ + ++ E+A K E
Sbjct: 322 GRETPVLAPLTTQGNLPFRRLCVDLGAQGTYSEMAMAKPIVQGQQ---SEWALMKAHESE 378
Query: 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLG 191
RP + PE L + + V+ Y + D+ G
Sbjct: 379 TRPPTLS-----PETLASNSPIVKVYDNSRDLRFG 408
Score = 43 (20.2 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 290 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWI 335
L NG+ D K ++E+ + V+ L P +F +++
Sbjct: 578 LGNGDCYSHADYYKAIDESHVDTVMIGRGALIKPWVFEEIAAGQYL 623
>CGD|CAL0005565 [details] [associations]
symbol:orf19.1565 species:5476 "Candida albicans" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 150 (57.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 57/206 (27%), Positives = 97/206 (47%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCK---EDRPLF- 161
IV+P+ LP+R L + GA+ Y+ M S + N E+A K + P F
Sbjct: 248 IVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQGH---NPEWALPKAHVSEYPGFG 304
Query: 162 VQFCANDPEILLNAARRVEPYCDYV---DINLGCPQRIARRGNYGAFLMDN-LPLVKSLV 217
VQ ++ AA + +V ++N GCP + + G+ L+D L++ L
Sbjct: 305 VQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQGSALLDQPSKLLRILS 364
Query: 218 EKLALNLNVPVSCKIRV-FPNLQDTIK--YAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
A + ++PV+ KIR ++T +++LE+ + + +HGR+R ++ K+ AD
Sbjct: 365 GMNASSGDIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITLHGRSRQQRYSKE--AD 422
Query: 275 WNAIKAVKNALRIPVLANGNVRHMED 300
WN I V V+ N N + ED
Sbjct: 423 WNYIAEVGT-----VVKNWNEQQKED 443
>UNIPROTKB|Q5ALL3 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:237561 "Candida albicans SC5314" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 150 (57.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 57/206 (27%), Positives = 97/206 (47%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCK---EDRPLF- 161
IV+P+ LP+R L + GA+ Y+ M S + N E+A K + P F
Sbjct: 248 IVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQGH---NPEWALPKAHVSEYPGFG 304
Query: 162 VQFCANDPEILLNAARRVEPYCDYV---DINLGCPQRIARRGNYGAFLMDN-LPLVKSLV 217
VQ ++ AA + +V ++N GCP + + G+ L+D L++ L
Sbjct: 305 VQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQGSALLDQPSKLLRILS 364
Query: 218 EKLALNLNVPVSCKIRV-FPNLQDTIK--YAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
A + ++PV+ KIR ++T +++LE+ + + +HGR+R ++ K+ AD
Sbjct: 365 GMNASSGDIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITLHGRSRQQRYSKE--AD 422
Query: 275 WNAIKAVKNALRIPVLANGNVRHMED 300
WN I V V+ N N + ED
Sbjct: 423 WNYIAEVGT-----VVKNWNEQQKED 443
>UNIPROTKB|K7EQU9 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AC011499 PANTHER:PTHR11082 HGNC:HGNC:26920
Ensembl:ENST00000591560 Uniprot:K7EQU9
Length = 171
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 46/156 (29%), Positives = 74/156 (47%)
Query: 116 LPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDR--PLF-VQFCANDPEIL 172
LPFR +C+R+GA+ M + T + + E+A K + +F VQ P+ +
Sbjct: 4 LPFRRICKRFGADVTCGEMA---VCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTM 60
Query: 173 LNAA----RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPV 228
A R VE D+VDIN+GCP + + G LM+ + +V + L+VP+
Sbjct: 61 TKCAELLSRTVE--VDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPL 118
Query: 229 SCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHG 260
+ KIR +Q+ + A L D G +L+ G
Sbjct: 119 TVKIRT--GVQERVNLAHRLLPELRDWGVALVTEMG 152
>WB|WBGene00021377 [details] [associations]
symbol:Y37E11B.5 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
HOGENOM:HOG000240610 OMA:MSEWALL GeneTree:ENSGT00550000075134
EMBL:FO080119 PIR:T33894 RefSeq:NP_500379.1
ProteinModelPortal:Q9TYN2 SMR:Q9TYN2 STRING:Q9TYN2 PaxDb:Q9TYN2
EnsemblMetazoa:Y37E11B.5.1 EnsemblMetazoa:Y37E11B.5.2 GeneID:177120
KEGG:cel:CELE_Y37E11B.5 UCSC:Y37E11B.5 CTD:177120
WormBase:Y37E11B.5 InParanoid:Q9TYN2 NextBio:895428 Uniprot:Q9TYN2
Length = 554
Score = 145 (56.1 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 62/254 (24%), Positives = 115/254 (45%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPM-LHSRIFT-ESEKYRNEEFATCKEDRPLF 161
K +AP+ LPFR +C YGA+ M L + I + + +Y + C++ +F
Sbjct: 205 KKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKRHPCEK---IF 261
Query: 162 -VQFCANDPEILLNAARRV-EPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 218
VQ + + A++ V E + D++DIN+GCP + + G L P + L E
Sbjct: 262 GVQLAGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCALPSR-P--QKLFE 318
Query: 219 KLALNLNV-----PVSCKIR--VFPNLQDTIKYAKMLEDAGC---SLLAVHGRTRDEKDG 268
LA +V P++ KIR + + +Y + ++ L+ H R+++++
Sbjct: 319 VLAATKSVLGGCCPLTVKIRTGMKEGVLKAPEYVEHMKKHSWHTPDLITFHPRSKEQRYT 378
Query: 269 KKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
+ A+W+ V+ A + +P+ G++ ED + LE+ G++ L P +F
Sbjct: 379 RL--ANWDFTFPVQEATKPVPLWVCGDILSWEDYYERLEQYPVNGIMIGRGALIKPWIFT 436
Query: 328 GF-RTAEWIVGSEE 340
W + S E
Sbjct: 437 EIDERRTWDISSTE 450
>UNIPROTKB|I3L4H0 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462
EMBL:AC040162 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HGNC:HGNC:26014 Ensembl:ENST00000570709 Uniprot:I3L4H0
Length = 124
Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE------------- 150
KLI+APMV LP R+L YGA+ Y L + ++ NE
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 151 -FATC-KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRG 200
F TC +E + Q +D E L AR VE +D+N+GCP++ + +G
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKG 124
>TAIR|locus:2152758 [details] [associations]
symbol:AT5G47970 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0009524 EMBL:AB017064
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000259834 KO:K05539 EMBL:AB024025
ProtClustDB:CLSN2686569 EMBL:AY072094 EMBL:AY096579 IPI:IPI00520234
RefSeq:NP_001078731.1 RefSeq:NP_199608.1 UniGene:At.66758
ProteinModelPortal:Q9FI41 SMR:Q9FI41 EnsemblPlants:AT5G47970.1
EnsemblPlants:AT5G47970.2 GeneID:834848 KEGG:ath:AT5G47970
TAIR:At5g47970 InParanoid:Q9FI41 OMA:KATRLAN PhylomeDB:Q9FI41
ArrayExpress:Q9FI41 Genevestigator:Q9FI41 Uniprot:Q9FI41
Length = 387
Score = 138 (53.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 39/135 (28%), Positives = 61/135 (45%)
Query: 103 PKLIVAPMVDNSELPFRMLCRRYGAEA-AYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
P +APM+ ++ +R L R A YT ML + E + A + P+
Sbjct: 10 PLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFSPDQHPIV 69
Query: 162 VQFCANDPEILLNAARRVEPYC-DYVDINLGCPQ-RIARRGNYGAFLMDNLPLVKSLVEK 219
+Q + E L A R Y D ++ N GCP +++ RG +GA LM + V +
Sbjct: 70 LQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKFVGEAMSV 129
Query: 220 LALNLNVPVSCKIRV 234
+A N N V+ K R+
Sbjct: 130 IAANTNAAVTVKCRI 144
>POMBASE|SPAC16.04 [details] [associations]
symbol:dus3 "tRNA dihydrouridine synthase Dus3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=ISO] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 PomBase:SPAC16.04 GO:GO:0005634 GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05544
HOGENOM:HOG000240610 OrthoDB:EOG4M950K PIR:T37732
RefSeq:NP_594572.1 ProteinModelPortal:Q9UTH9 STRING:Q9UTH9
EnsemblFungi:SPAC16.04.1 GeneID:2541573 KEGG:spo:SPAC16.04
OMA:PWIFEEV NextBio:20802667 Uniprot:Q9UTH9
Length = 617
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 51/203 (25%), Positives = 91/203 (44%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYR-------NEEFATC 154
R + I+AP+ PFR LC GA+ Y+ M + + N E
Sbjct: 238 RDRKILAPLTTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYEREMM 297
Query: 155 KEDRP--LFVQFCANDPEILLNAARRVEPYCD---YVDINLGCPQRIARRGNYGAFLMDN 209
+ R L VQ A+ + CD ++D+N GCP + R G+ L++N
Sbjct: 298 RGGRRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFRQGAGSSLLEN 357
Query: 210 LP--LVKSLVEKLALNLNVPVSCKIRVFPNLQD--TIK--YAKMLEDAGCSLLAVHGRTR 263
P L+++L A++ +PV+ K+R+ N D +K ++ + S +HGR+R
Sbjct: 358 -PGRLLRNLQGMDAVSGQIPVTVKLRM-GNKDDHPVVKNLIGRIFNETNTSAATLHGRSR 415
Query: 264 DEKDGKKFRADWNAIKAVKNALR 286
++ K A+W+ I + + ++
Sbjct: 416 QQRYSKN--ANWDYIGEIASKVK 436
>UNIPROTKB|F2Z2E4 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC004839 EMBL:AC002381 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HGNC:HGNC:21517 IPI:IPI00924597 SMR:F2Z2E4
Ensembl:ENST00000422290 Ensembl:ENST00000431839
Ensembl:ENST00000436411 Uniprot:F2Z2E4
Length = 90
Score = 107 (42.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 106 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAT 153
+ APMV S+L FR L R+Y + YTPM+ + F +S K R+ EF T
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTT 77
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 436 386 0.00092 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 126
No. of states in DFA: 615 (65 KB)
Total size of DFA: 262 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.78u 0.07s 30.85t Elapsed: 00:00:03
Total cpu time: 30.80u 0.07s 30.87t Elapsed: 00:00:03
Start: Mon May 20 15:08:52 2013 End: Mon May 20 15:08:55 2013
WARNINGS ISSUED: 1