BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013813
(436 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus
musculus GN=Dus1l PE=2 SV=1
Length = 475
Score = 288 bits (737), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 139/299 (46%), Positives = 195/299 (65%), Gaps = 19/299 (6%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--T 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus1l PE=2 SV=1
Length = 438
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 194/299 (64%), Gaps = 19/299 (6%)
Query: 97 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--T 153
W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG YGAFL + L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo
sapiens GN=DUS1L PE=1 SV=1
Length = 473
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 193/299 (64%), Gaps = 19/299 (6%)
Query: 97 WTKLGR-PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AT 153
W++ R + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 213
C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L+
Sbjct: 70 CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129
Query: 214 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 273
+ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAV 249
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 392
W +L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 250 W----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus1 PE=3 SV=1
Length = 399
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 137/305 (44%), Positives = 194/305 (63%), Gaps = 18/305 (5%)
Query: 97 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAT--C 154
+ K+GRPK I+APMVD SELP+R+L RR GA+ Y+PM HSR+F ESE YRN+ F+T
Sbjct: 12 YNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTI 71
Query: 155 KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 214
E+RPL +QFC NDPEI+L AA+ PYCD VD+NLGCPQ IA++G YG+FL +N L++
Sbjct: 72 PEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131
Query: 215 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
S++ KL L++PV+ KIR+FP+ Q T+ YAKM+ AG S+LAVHGR R++K AD
Sbjct: 132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIAD 191
Query: 275 WNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332
W I+ ++ L + ANGN+ H +D+ +C++ TG +GVLSAE L NP +F
Sbjct: 192 WEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLP---- 247
Query: 333 EWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV-----PWRMIRSHVHKLLGEWFRIQPG 387
S ++ +D D+ EYL + ++ + I+ H+ KL+ I
Sbjct: 248 ---PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIHTD 302
Query: 388 VREDL 392
+R L
Sbjct: 303 IRSKL 307
>sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1
SV=1
Length = 423
Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 193/313 (61%), Gaps = 19/313 (6%)
Query: 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAT---CK 155
K+GRP IVAPMVD SEL +R+L RRYGA AYTPMLH+++F S+KYR + +++
Sbjct: 25 KIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSS 84
Query: 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 215
DRPL VQFCANDPE LL AA+ VE CD VD+NLGCPQ IA++G+YG+FLM+ L+ +
Sbjct: 85 VDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHN 144
Query: 216 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 275
L+ L NL VPV+ KIR+F + + ++ YAKM+ DAG L VHGR R++K K A+W
Sbjct: 145 LINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANW 204
Query: 276 NAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
IK +++ L ANGN+ + ED+ +C+E G + V+SAE L NP +F +T
Sbjct: 205 ETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQTK- 263
Query: 334 WIVGSEEISKDGNLDQADLLV-EYLKL---CEKYPVPWRMIRSHVHKLLGEWFRIQPGVR 389
+K+ + D ++ EY ++ C++ ++SH K+L + +R
Sbjct: 264 --------NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIR 315
Query: 390 EDLNAQN-RLTFE 401
L N + T+E
Sbjct: 316 STLATMNAKATWE 328
>sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo
sapiens GN=DUS4L PE=2 SV=2
Length = 317
Score = 178 bits (452), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 141/232 (60%), Gaps = 6/232 (2%)
Query: 101 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPL 160
G+ + APMV S+L FR L R+Y + YTPM+ + F +S K R+ EF T + D PL
Sbjct: 25 GQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPL 84
Query: 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 220
VQF AND +L +AAR V PY + +DIN GCPQR A YGA L++ LV+ +V+++
Sbjct: 85 IVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQV 144
Query: 221 ALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
+ P VS KIR+ +L+ T+ + E G S + VHGRT +E+ +++
Sbjct: 145 RNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQP---VHYDS 201
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
IK +K + IPV+ANG++R +++ + TG +GV+ A LL NPA+FAG+
Sbjct: 202 IKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGY 253
>sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus
musculus GN=Dus4l PE=2 SV=1
Length = 324
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 137/232 (59%), Gaps = 6/232 (2%)
Query: 101 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPL 160
G+ + APMV S+L FR L R+Y + YTPM+ + F S K R+ EF T + D PL
Sbjct: 25 GQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPL 84
Query: 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 220
VQF AND +L +AA V PY + +DIN GCPQR A YGA L++ LV +V ++
Sbjct: 85 IVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQV 144
Query: 221 ALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
+ P VS KIR+ +L TI + E G S + VHGRT +E+ ++A
Sbjct: 145 RNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQP---VHYDA 201
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
IK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG+
Sbjct: 202 IKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
>sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2
OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2
Length = 284
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 158/304 (51%), Gaps = 26/304 (8%)
Query: 110 MVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDP 169
MV S+L FR L R Y + +TPM++++ F ESEK R+ E + C+ D PL VQF +DP
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDP 60
Query: 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-- 227
+L AA V VD+N GCP+ R +G+ L+ L+ +V + + P
Sbjct: 61 FVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 228 -VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 286
VS KIR+ +++ T+ + E AG + L VHGRT ++ D A++ VK+++
Sbjct: 121 SVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEP---IDIQALRIVKDSVS 177
Query: 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGN 346
+P++ANG + E+ E+TG +G+++A LL+NPALFAG
Sbjct: 178 VPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTP------------- 224
Query: 347 LDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN-RLTFE-FLY 404
+D + +++L +Y + W + H+ +L F Q R N N RL + FL
Sbjct: 225 ---SDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQ--RRVFNELNGRLAIDHFLN 279
Query: 405 NLVD 408
NL+D
Sbjct: 280 NLLD 283
>sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus4 PE=3 SV=1
Length = 326
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 133/235 (56%), Gaps = 5/235 (2%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
RP I APMV S+LPFR L R Y + YTPM+ ++ F K R +F+T D L
Sbjct: 19 RPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHP-KGRYFDFSTNDADASLI 77
Query: 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE--K 219
+QF +DP IL AA+ V PY D + IN GCPQ A + G+ L+D V LV K
Sbjct: 78 LQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVK 137
Query: 220 LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279
L + KIR+ +L T +++E +G ++ VHGRTR +D F + +AI+
Sbjct: 138 STLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTR--QDRSSFPVNLDAIR 195
Query: 280 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 334
V+ ++IPV+ANG+V+ + + + T +G++SA LLENPALFAG+ W
Sbjct: 196 EVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPW 250
>sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1
SV=1
Length = 367
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 130/239 (54%), Gaps = 7/239 (2%)
Query: 101 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPL 160
GRP I PMV S+LPFR LCR Y + Y+PM+ +R + +E R + +T ED PL
Sbjct: 37 GRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPL 96
Query: 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE-- 218
VQ N+ LL V PYCD + IN GCP + R G L+ N L+ S+V
Sbjct: 97 IVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYNSDLLCSMVHAV 156
Query: 219 KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
K + + KIR+ L +T++ + L DAG + +HGRTR + + A+ +AI
Sbjct: 157 KDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQP--ANLDAI 214
Query: 279 KAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 334
K + + +PV+ANG+ + D+++ + TG GV++ LL NPALFAG+ T W
Sbjct: 215 KYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYTTCPW 273
>sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens
GN=DUS2L PE=1 SV=1
Length = 493
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 130/254 (51%), Gaps = 23/254 (9%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCK----EDRP 159
KLI+APMV LP R+L YGA+ Y L + ++ NE +T +DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 160 LF-----------VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
+F Q +D E L AR VE +D+N+GCP++ + +G GA L+
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 132
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
+ ++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREER-- 190
Query: 269 KKFRADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCEGVLSAESLLENPA 324
+ IKA+ + L IPV+ANG +++ D++ + T V+ A + + NP+
Sbjct: 191 PQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPS 250
Query: 325 LF--AGFRTAEWIV 336
+F G R E ++
Sbjct: 251 IFLKEGLRPLEEVM 264
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 5/226 (2%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQ 163
+LI+APM ++ PFR LCRR GA + M+ S + + + ED P VQ
Sbjct: 14 RLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEPRSVQ 73
Query: 164 FCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
DP +L AA+R VE +DIN+GCP + G+ L+ + LV +++ +
Sbjct: 74 IAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSALLRDEALVAEILDAVVR 133
Query: 223 NLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
++VPV+ KIR + ++ + AK+ E AG LAVHGRTR D A++ I A
Sbjct: 134 AVDVPVTLKIRTGWDRDNRNGVTVAKLAEQAGIQALAVHGRTR--ADLYTGEAEYETIAA 191
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+K A+ IPV ANG++ E +K +E+TG + +L + P +F
Sbjct: 192 IKQAVSIPVFANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPWIF 237
>sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus
GN=Dus2l PE=1 SV=1
Length = 493
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 129/254 (50%), Gaps = 23/254 (9%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCK----EDRP 159
KLI+APMV LP R+L YGA+ Y L + ++ NE +T +DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 72
Query: 160 LF-----------VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD 208
+F Q +D E L AR VE +D+N+GCP+ + +G GA L+
Sbjct: 73 VFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268
+ ++ ++ L + PV+CKIR+ P+L+DT+ K +E G S +AVHGR RDE+
Sbjct: 133 DPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDER-- 190
Query: 269 KKFRADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCEGVLSAESLLENPA 324
+ I+A+ L IPV+ANG +++ D++ + T V+ A + + NP+
Sbjct: 191 PQHPVSCEVIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPS 250
Query: 325 LFA--GFRTAEWIV 336
+F G R E ++
Sbjct: 251 IFLKDGLRPLEEVM 264
>sp|O67533|DUS_AQUAE Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus (strain
VF5) GN=dus PE=3 SV=1
Length = 316
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 140/264 (53%), Gaps = 14/264 (5%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
+ ++I+APM + FR LCRR GA+ YT ++ + + + T +E+RP+
Sbjct: 5 KGEVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLRNGIPMKLAYFT-EEERPIH 63
Query: 162 VQFCANDPEILLNA----ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
+Q ++PE + A A+ ++P D++DIN GC R +++ PL+ +V
Sbjct: 64 IQVFGSNPEEIAQASVVIAKELKP--DFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVV 121
Query: 218 EKLALNL---NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274
++ L +PVS KIR+ + + + L+ AG SL+A+H RT K G +A
Sbjct: 122 KETVEALKPYGIPVSAKIRLGFEKDEVERIVEELQKAGVSLIAIHART--AKQGFSGKAL 179
Query: 275 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 334
W+ IK K +P++ +G+V+ D+++ EET C+GV+ + L NP +F F+
Sbjct: 180 WHRIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKEKRD 239
Query: 335 I-VGSEEISKDGNLDQADLLVEYL 357
I VG +E D L++ ++ EY+
Sbjct: 240 IEVGLKE-RMDFILEELSMMTEYM 262
>sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusB PE=3 SV=1
Length = 332
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 140/280 (50%), Gaps = 14/280 (5%)
Query: 103 PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHS--RIFTESEKYRNEEFATCKEDRPL 160
PK+I+APM ++ PFR+LC+R GA A + M S R + + + A E P+
Sbjct: 10 PKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKSLHRMDHA--GEPDPI 67
Query: 161 FVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219
VQ +P+ L AAR V+ +DIN+GCP + G+ LM + LV ++
Sbjct: 68 SVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSALMRDEELVARILTA 127
Query: 220 LALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
+ +NVPV+ KIR + ++ A++ +D G + LAVHGRTRD+ A++
Sbjct: 128 VVQAVNVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTRDQH--YTGSAEYAT 185
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 337
I +K AL+IPV+ANG++ + + L ETG + V+ + P +F A ++
Sbjct: 186 IAQIKAALQIPVVANGDIDSPQKAAQVLRETGADAVMIGRAAQGRPWIFG--EVAHFLAT 243
Query: 338 SEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHV 374
E + D L+ +L+ + P R+ R H+
Sbjct: 244 GEVLPPPSLAFVRDTLLGHLEALHAFYGQPQGVRIARKHL 283
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 170/331 (51%), Gaps = 26/331 (7%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR---IFTESEKYRNEEFATCKEDR 158
+ ++ +APM ++ PFR +C YGA ++ M+ + TE K R A +E
Sbjct: 9 KNRIFLAPMAGITDQPFRRICTHYGAGLTFSEMMSTNPQVWHTEKSKLR---LAHHQEAG 65
Query: 159 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ DP+ + AA+ VE + +DIN+GCP + R G+ L+ LVK ++
Sbjct: 66 INAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSALLQYPDLVKQIL 125
Query: 218 EKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRAD 274
K+ ++ VPV+ KIR + ++ ++ AK+ E G L +HGRTR +G+ A+
Sbjct: 126 NKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTRSCMFEGE---AE 182
Query: 275 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 334
++ IKAVK L IP++ANG++ E + L+ T + ++ L NP L FR E
Sbjct: 183 YDNIKAVKEQLSIPIIANGDITSAEKAKYVLDYTNADAIMIGRGSLGNPWL---FRVMES 239
Query: 335 IVGSEEISKDGNLDQ-ADLLVEYLK-LCEKYPVP--WRMIRSHVHKLLGEWFRIQPGVRE 390
++ + I + +L++ ++++++++ L + Y V R+ R HV L + + P R+
Sbjct: 240 LIEKDSIVLEPSLNEKCNVILQHIQELHQFYGVEKGCRIARKHVAWYL-QGIQPNPVFRQ 298
Query: 391 DLNA-----QNRLTFEFLYNLVDRLRELGVR 416
NA + + E +NL+ +E VR
Sbjct: 299 AFNAITDPKEQLIALEGFFNLILMDKEKNVR 329
>sp|Q8EJR8|DUSB_SHEON tRNA-dihydrouridine synthase B OS=Shewanella oneidensis (strain
MR-1) GN=dusB PE=3 SV=1
Length = 322
Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 5/228 (2%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
+ +LIVAPM ++ FR LC RYGA A + ML S + E+
Sbjct: 9 KNQLIVAPMAGVTDQAFRNLCLRYGAALAVSEMLSSNPEVWDTDKSRQRMTHSGEEGIRS 68
Query: 162 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 220
VQ DPE++ AA+ VE +DIN+GCP + + G+ LM N PLVK +++ +
Sbjct: 69 VQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKDILQAV 128
Query: 221 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
++VPV+ KIR P ++ ++ A++ ED G + LAVHGRTR + K A+++ I
Sbjct: 129 VAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTR--QCMYKGNAEYDTI 186
Query: 279 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
KA+K + IPV+ANG++ E + L+ TG + ++ P +F
Sbjct: 187 KAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIF 234
>sp|Q4UNJ4|DUS_RICFE Probable tRNA-dihydrouridine synthase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dus PE=3 SV=1
Length = 325
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 132/256 (51%), Gaps = 8/256 (3%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED-RPLFVQ 163
+I+APM D ++L FR L +R+GA + M+ SR + ++ A +D VQ
Sbjct: 13 VILAPMSDITDLEFRKLVKRFGAGLVVSEMIASRAMVVKSRQSMQKCAIVHDDPTSACVQ 72
Query: 164 FCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
+P ++ AA+ E +D+N GCP + G G+ LM + L + E
Sbjct: 73 LAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIFEATVK 132
Query: 223 NLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
+ +P++ K+R+ N ++ AK+ E +G ++ VHGRTR + ADW+ I++
Sbjct: 133 AVKIPITVKMRMGWDDNTKNAPDLAKIAESSGVQMVTVHGRTRCQF--YSGNADWDFIRS 190
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEE 340
VK A++IPV+ANG++ + ++ L+++G +G++ P L + + A ++ EE
Sbjct: 191 VKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLVS--QIAHYLKTGEE 248
Query: 341 ISKDGNLDQADLLVEY 356
+Q D++ E+
Sbjct: 249 KPAPSIAEQLDIVTEH 264
>sp|Q55724|DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus1 PE=3 SV=1
Length = 355
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 136/256 (53%), Gaps = 23/256 (8%)
Query: 94 WAHWTKLG----RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNE 149
WA ++G +++ +P+ ++L FR L RRY +A ML++ + + +E +
Sbjct: 29 WAKPLQIGSLTLHSRVLQSPLSGVTDLVFRRLVRRYAPQA----MLYTEMVSATEIHHLR 84
Query: 150 EFATCKE----DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCP-QRIARRGNYG 203
E + P+ +Q P+ + AA++ V VDIN+GCP +I ++G G
Sbjct: 85 TLPQVMEIDPRENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGG-G 143
Query: 204 AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGR 261
+ L+ + +++V+ + ++VPV+ K R+ + +++A+ L+DAG +L +HGR
Sbjct: 144 SSLLRQPAVAEAIVKTVVAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGR 203
Query: 262 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321
TR + G RA W I VK AL IPV+ANG++ +E CLEETG +GV+ + L
Sbjct: 204 TRAQ--GYNGRARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLG 261
Query: 322 NPALFAG----FRTAE 333
P L F+T E
Sbjct: 262 YPFLVGEIEHFFKTGE 277
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 9/230 (3%)
Query: 103 PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHS--RIFTESEKYRNEEFATCKEDRPL 160
PK+I+APM ++ PFR+LC+R GA A + M S R + + + A E P+
Sbjct: 10 PKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKSLHRMDHA--GEPDPI 67
Query: 161 FVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219
VQ +P+ L AAR V+ +DIN+GCP + G+ LM + LV ++
Sbjct: 68 SVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSALMRDEDLVARILSA 127
Query: 220 LALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
+ ++VPV+ KIR + ++ A++ +D G + LAVHGRTRD+ A++
Sbjct: 128 VVRAVDVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTRDQH--YTGTAEYAT 185
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
I +K AL+IPV+ANG++ + + L +TG + V+ + P +F
Sbjct: 186 IAQIKAALQIPVIANGDIDSPQKAAQVLRDTGVDAVMIGRAAQGRPWIFG 235
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 143/286 (50%), Gaps = 21/286 (7%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR--IFTESEKYRNEEFATCKEDRP 159
R ++++APM +++PFR L R+GA T M+ SR + +E + + A RP
Sbjct: 4 RNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF---RP 60
Query: 160 LFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 218
VQ + + AA+ + D +DIN+GCP + G G+ LM + L+E
Sbjct: 61 HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIE 120
Query: 219 KLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 276
+++PV+ K+R+ N + A+ E +G L+ +HGRTR + + RADW+
Sbjct: 121 ATVKAVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQF--YEGRADWD 178
Query: 277 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIV 336
AI+AV+ + +P++ANG+V D Q+ L +G + V+ P AG +
Sbjct: 179 AIRAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRP-WHAGV-----LA 232
Query: 337 GSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWF 382
G+ E ++ D AD+ VE+ ++ + IR H K LG W+
Sbjct: 233 GAAEPRRE---DIADIAVEHYRMMLDFYGEAVAIR-HARKHLG-WY 273
>sp|Q92JQ6|DUS_RICCN Probable tRNA-dihydrouridine synthase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dus PE=3 SV=2
Length = 331
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 134/263 (50%), Gaps = 8/263 (3%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED-RPLFVQ 163
+I+APM ++L FR L +R+GA + M+ SR + ++ A ++D VQ
Sbjct: 13 IILAPMSGVTDLEFRRLVKRFGAGLVVSEMVASRAMIVESRQSLKKSAIMRDDATSACVQ 72
Query: 164 FCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
+P ++ AA+ E +D+N GCP + G G+ LM + L + E
Sbjct: 73 LAGCEPNVIAEAAKMNEGMGAKIIDLNFGCPAKKVVGGYSGSALMKDEQLAAKIFEATVE 132
Query: 223 NLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
+ +PV+ K+R+ N ++ AK+ E +G ++ VHGRTR + ADW+ I++
Sbjct: 133 AVKLPVTVKMRMGWDDNTKNAPTLAKIAESSGVQMITVHGRTRCQF--YSGNADWDFIRS 190
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEE 340
VK +++IPV+ANG++ + ++ L+++G +G++ P L + + ++ EE
Sbjct: 191 VKESVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLIS--QIDHYLKTGEE 248
Query: 341 ISKDGNLDQADLLVEYLKLCEKY 363
S +Q D++ E+ + Y
Sbjct: 249 KSAPSIAEQLDIVTEHYEAILDY 271
>sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2
Length = 322
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 5/225 (2%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
LIVAPM ++ PFR LC RYGA A + M+ + + E VQ
Sbjct: 12 LIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWKTSKSKQRMVHEGESGIRSVQI 71
Query: 165 CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223
+DP+++ +AA+ VE +DIN+GCP + + G+ L+ +++ +++ +
Sbjct: 72 AGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLQYPTIIEEILKAVVNA 131
Query: 224 LNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 281
++VPV+ K R + ++ ++ AK+ ED G LA+HGRT+ K A++++IKAV
Sbjct: 132 VDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQALALHGRTKACM--YKGEAEYDSIKAV 189
Query: 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
K A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 190 KEAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRPAQGRPWIF 234
>sp|Q88DK5|DUSB_PSEPK tRNA-dihydrouridine synthase B OS=Pseudomonas putida (strain
KT2440) GN=dusB PE=3 SV=1
Length = 337
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 150/306 (49%), Gaps = 17/306 (5%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
R LI+APM ++ PFR LC+R GA + M+ S + + + + + P
Sbjct: 12 RNNLILAPMAGVTDQPFRTLCQRLGAGMVVSEMVSSDMSLWNSRKSSLRRIHEGDPEPRS 71
Query: 162 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 220
VQ D +++ AA+ VE +DIN+GCP + G+ L+ + LV ++ +
Sbjct: 72 VQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEALVSEILHAV 131
Query: 221 ALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
++VPV+ KIR + ++ + AK+ E AG LAVHGRTR D A+++ I
Sbjct: 132 VSAVDVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRTR--ADLYTGEAEYDTI 189
Query: 279 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS 338
A+K A+ IPV ANG++ E + LE TG +G+L + P + FR E + +
Sbjct: 190 GAIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWI---FREIEHYLRT 246
Query: 339 EEISKDGNLDQAD-LLVEYLKLCEKY---PVPWRMIRSHVHKLL-----GEWFRIQPGVR 389
E LD+ + +L+E+L + + R+ R HV L G+ FR +
Sbjct: 247 GEHLPAPQLDEVERILLEHLAALHAFYGDVMGVRIARKHVGWYLATRPGGKEFRARFNAL 306
Query: 390 EDLNAQ 395
ED AQ
Sbjct: 307 EDTQAQ 312
>sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1
Length = 330
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 161/327 (49%), Gaps = 36/327 (11%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR---IFTESEKYRNEEFATCKEDR 158
R ++++APM ++ PFR LC YGA ++ M+ + TE K R ED
Sbjct: 9 RNRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLR----LAHSEDL 64
Query: 159 PL-FVQFCANDP-EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 216
L VQ +DP E+ AA VE +DIN+GCP + R G+ L+ LV+ +
Sbjct: 65 GLNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDLVEKI 124
Query: 217 VEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRA 273
+ ++ +NVPV+ KIR + ++ ++ K+ E G L VHGRTR +G+ A
Sbjct: 125 LREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEGE---A 181
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
+++ IKAVK A+ IPV+ANG++ + L TG + ++ + L NP L F+ E
Sbjct: 182 EYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWL---FQAVE 238
Query: 334 WIVGSEEISKDGNLDQ--ADLLVEYLKLCEKY--PVPWRMIRSHVHKLLGEWF--RIQPG 387
++ IS+ +L + +L +L + Y +R+ R HV W+ IQP
Sbjct: 239 NLIEHNSISQMPSLKEKCGQILRHIQELHQFYGEQKGYRIARKHV-----AWYLQGIQPD 293
Query: 388 --VREDLNA-----QNRLTFEFLYNLV 407
++ NA + + E +NL+
Sbjct: 294 SVFKQTFNAISDPKEQLIVLEDFFNLI 320
>sp|Q9ZED2|DUS_RICPR Probable tRNA-dihydrouridine synthase OS=Rickettsia prowazekii
(strain Madrid E) GN=dus PE=3 SV=2
Length = 327
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 119/227 (52%), Gaps = 6/227 (2%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED-RPLFVQ 163
+I+APM D ++L FR L +R+GA + M+ SR + ++ A +D VQ
Sbjct: 13 VILAPMSDVTDLEFRKLVKRFGAGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSACVQ 72
Query: 164 FCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
+P+++ AA+ E +D+N GCP + G G+ LM + L + E
Sbjct: 73 LAGCEPDVIAEAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIFEATVK 132
Query: 223 NLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
+ +PV+ K+R+ N ++ AK+ ++G ++ VHGRTR + A+W+ I+
Sbjct: 133 AVKIPVTVKMRIGWDDNTRNAPTLAKIAANSGVQMVTVHGRTRCQF--YSGNANWDFIRT 190
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
VK A++IPV+ANG++ + ++ L+ +G +G++ + P L +
Sbjct: 191 VKEAVKIPVIANGDITNFAKAKEALQRSGADGIMVGRGVYGKPWLIS 237
>sp|O52539|DUSB_ERWCA tRNA-dihydrouridine synthase B OS=Erwinia carotovora GN=dusB PE=3
SV=2
Length = 321
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 156/323 (48%), Gaps = 33/323 (10%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE--FATCKEDRPLF 161
+LI APM S+ PFR LC GA + ML S E +R+++ D P
Sbjct: 11 RLIAAPMAGISDRPFRALCHAMGAGMTVSEMLSS----NPEVWRSDKSRLRMVHSDEPGI 66
Query: 162 --VQFCANDPEILLNAARRV--EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ DP+ + AARR+ + +DIN+GCP + R G+ L+ LVK ++
Sbjct: 67 RAVQIAGCDPD-EMAAARRINADSGAQIIDINMGCPAKKVNRKMAGSALLQYPDLVKQIL 125
Query: 218 EKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR--A 273
+ ++VPV+ KIR P ++ ++ AK+ ED G L +HGRTR F A
Sbjct: 126 STVVKAVDVPVTLKIRTGWAPEHRNCVEIAKLAEDCGIQALTIHGRTR----ACLFNGFA 181
Query: 274 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333
++++I+AVK A+ IP++ANG++ + L+ TG + ++ + P +F +
Sbjct: 182 EYDSIRAVKQAVSIPIIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIFREIQ--H 239
Query: 334 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVP---WRMIRSHVHKLLGEWFRIQPGVRE 390
++ E ++ ++ LL+E+++ + P +R+ R HV L E
Sbjct: 240 YLDTGELLAPLPLVEVKRLLIEHIRELHDFYGPGKGFRIARKHVSWYLQE---------H 290
Query: 391 DLNAQNRLTFEFLYNLVDRLREL 413
N Q R TF + + ++L L
Sbjct: 291 APNDQFRRTFNAIEDASEQLEAL 313
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 140/278 (50%), Gaps = 14/278 (5%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCK-EDRPLFVQ 163
+I+APM ++LPFR L ++ G + M+ S+ E + C+ E P+ VQ
Sbjct: 14 VILAPMSGVTDLPFRRLVKQSGCGLVVSEMVASQAMIR-ENRQTLRMVECEPEQFPMAVQ 72
Query: 164 FCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
+P+++ AA+ E +DIN GCP + G+ G+ LM + L ++E A
Sbjct: 73 LAGCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVVNGHAGSSLMRDEALAARILEATAK 132
Query: 223 NLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-KDGKKFRADWNAIK 279
+ +PV+ K+R + + + A++ E+ G L+ VHGRTR++ +G ADW+ I+
Sbjct: 133 AVTIPVTLKMRKGWDDSSLNAPRLARIAEECGIKLVTVHGRTREQFYNGT---ADWSFIR 189
Query: 280 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSE 339
+VK A+ IPV+ NG++ + V + L E+G +GV+ P A + +I E
Sbjct: 190 SVKEAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGAYGRPWFPA--QVMHYIRTGE 247
Query: 340 EISKDGNLDQADLLVE-YLKLCEKYPV--PWRMIRSHV 374
+ +Q D L+E Y + Y V R+ R H+
Sbjct: 248 RLPDPPLHEQLDTLLEHYDAMLTHYGVEGGLRVARKHI 285
>sp|P0A2R6|DUSB_SALTY tRNA-dihydrouridine synthase B OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusB PE=3 SV=1
Length = 321
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 11/231 (4%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKEDRPL 160
R +LI APM ++ PFR LC GA + M+ S ES+K R D P
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR---LRMVHVDEPG 65
Query: 161 F--VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ +DP + +AAR VE +DIN+GCP + R G+ L+ LVKS++
Sbjct: 66 IRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSIL 125
Query: 218 EKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 275
+ ++VPV+ KIR P ++ ++ A++ ED G L +HGRTR + A++
Sbjct: 126 IGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE--AEY 183
Query: 276 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
++I+AVK + IP++ANG++ + + L+ TG + ++ + P +F
Sbjct: 184 DSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P0A2R7|DUSB_SALTI tRNA-dihydrouridine synthase B OS=Salmonella typhi GN=dusB PE=3
SV=1
Length = 321
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 11/231 (4%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKEDRPL 160
R +LI APM ++ PFR LC GA + M+ S ES+K R D P
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR---LRMVHVDEPG 65
Query: 161 F--VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ +DP + +AAR VE +DIN+GCP + R G+ L+ LVKS++
Sbjct: 66 IRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSIL 125
Query: 218 EKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 275
+ ++VPV+ KIR P ++ ++ A++ ED G L +HGRTR + A++
Sbjct: 126 IGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE--AEY 183
Query: 276 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
++I+AVK + IP++ANG++ + + L+ TG + ++ + P +F
Sbjct: 184 DSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q8ZAX7|DUSB_YERPE tRNA-dihydrouridine synthase B OS=Yersinia pestis GN=dusB PE=3 SV=1
Length = 321
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE--FATCKEDRPLF- 161
LI APM ++ PFR LC GA A + ML S E +R ++ D P
Sbjct: 12 LIAAPMAGITDRPFRALCHGMGAGMAVSEMLSS----NPEVWRTDKSRLRMVHVDEPGIR 67
Query: 162 -VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219
VQ NDP+ + AAR V +DIN+GCP + R G+ L+ + LVK ++
Sbjct: 68 NVQIAGNDPDEMAAAARINVASGAQIIDINMGCPAKKVNRKLAGSALLQHPDLVKQILSA 127
Query: 220 LALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
+ ++VPV+ KIR P ++ I+ A++ E+ G L +HGRTR + A++++
Sbjct: 128 VVNAVDVPVTLKIRTGWSPEHRNCIEIAQLAENCGIQALTIHGRTRSCLFNGE--AEYDS 185
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 186 IRAVKQTVSIPVIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q87VS1|DUSB_PSESM tRNA-dihydrouridine synthase B OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusB PE=3 SV=1
Length = 337
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 14/300 (4%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
LI+APM ++ PFR LCR+ GA + M+ S + + + + P VQ
Sbjct: 15 LILAPMAGVTDQPFRQLCRQLGAGLVVSEMVTSDMSLWNSRKSRLRMIHAGDPEPRSVQI 74
Query: 165 CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223
D +++ +AAR VE +DIN+GCP + G+ L+ + LV +++ +
Sbjct: 75 AGGDAQMMADAARANVELGAQIIDINMGCPAKKVCNKAAGSALLKDEQLVNDILQAVVAA 134
Query: 224 LNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 281
++VPV+ KIR + ++ + AK+ E AG LAVHGRTR D A+++ I +
Sbjct: 135 VDVPVTLKIRTGWDRDNRNGLTVAKIAEQAGIQALAVHGRTR--ADLYTGEAEYDTIAMI 192
Query: 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEI 341
K A+ IPV ANG++ E + L+ TG +G+L + P +F +++ + +
Sbjct: 193 KQAVSIPVFANGDIDSPEKARHVLQATGADGLLIGRAAQGRPWIFR--EIEHYLLTGKTL 250
Query: 342 SKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRL 398
+ + +L+E+L + + R+ R HV G + PG RE NRL
Sbjct: 251 PALQSSEVERILLEHLAALHVFYGDVMGVRIARKHV----GWYLATLPGAREFRALFNRL 306
>sp|Q68XZ3|DUS_RICTY Probable tRNA-dihydrouridine synthase OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=dus PE=3 SV=1
Length = 327
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 133/256 (51%), Gaps = 8/256 (3%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED-RPLFVQ 163
+I+APM + ++L FR L +R+GA + M+ SR + ++ A +D VQ
Sbjct: 13 VILAPMSNITDLEFRKLVKRFGAGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSACVQ 72
Query: 164 FCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
+P+++ +AA+ E +D+N GCP + G G+ LM + L + E
Sbjct: 73 LAGCEPDVIADAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDERLATKIFEATVK 132
Query: 223 NLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
+ +PV+ K+R+ N ++ A + +G ++ VHGRTR + A+W+ I+
Sbjct: 133 AVKIPVTVKMRMGWDDNTKNAPTLAVIAASSGVQMVTVHGRTRCQF--YSGNANWDFIRV 190
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEE 340
VK A++IPV+ANG++ + ++ L+++G +G++ + P L + + A ++ +E
Sbjct: 191 VKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGVYGKPWLIS--QIAYYLKTGKE 248
Query: 341 ISKDGNLDQADLLVEY 356
+Q D+++++
Sbjct: 249 KPAPSIAEQLDIIIKH 264
>sp|Q8CWL2|DUSB_VIBVU tRNA-dihydrouridine synthase B OS=Vibrio vulnificus (strain CMCP6)
GN=dusB PE=3 SV=2
Length = 322
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 5/228 (2%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
+ KLIVAPM ++ PFR LC RYGA A + M+ S + E
Sbjct: 9 KNKLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPQLWKTSKSKQRMVHEGESGIRS 68
Query: 162 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 220
VQ +DP+++ +AA+ VE +DIN+GCP + + G+ L+ +++ +++ +
Sbjct: 69 VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLKYPDIIEQILKAV 128
Query: 221 ALNLNVPVSCKIRVFPNLQDT--IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
++VPV+ K R + ++ I AK+ ED G LA+HGRT+ K A++++I
Sbjct: 129 VDAVDVPVTLKTRTGWDTENKNCIHIAKLAEDCGIQALALHGRTKACM--YKGEAEYDSI 186
Query: 279 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
KAVK A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 187 KAVKQAVSIPVIANGDIDSPEKAKYVLEYTGADALMIGRPAQGRPWIF 234
>sp|Q1RH84|DUS_RICBR Probable tRNA-dihydrouridine synthase OS=Rickettsia bellii (strain
RML369-C) GN=dus PE=3 SV=1
Length = 326
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 130/263 (49%), Gaps = 8/263 (3%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKED-RPLFVQ 163
+I+APM ++L FR L +R+GA + M+ SR + ++ + ++D VQ
Sbjct: 13 IILAPMSGVTDLEFRRLVKRFGAGLVVSEMIASRAMIVESRQSLQKCSIMQDDATSACVQ 72
Query: 164 FCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 222
+P ++ AA+ E +D+N GCP + G G+ LM + L + E
Sbjct: 73 LAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDEGLAAKIFEAAVK 132
Query: 223 NLNVPVSCKIRVFPNLQ--DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
+ +PV+ K+R+ + Q + AK+ E +G ++ VHGRTR + ADW IK
Sbjct: 133 AVKIPVTVKMRMGWDDQTKNAPTLAKIAERSGIQMVTVHGRTRCQF--YSGNADWEFIKN 190
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEE 340
VK A++IPV+ANG++ + ++ LE++ +GV+ P L + + ++ EE
Sbjct: 191 VKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGAYGKPWLIS--QIDHYLKTGEE 248
Query: 341 ISKDGNLDQADLLVEYLKLCEKY 363
Q D+++E+ + Y
Sbjct: 249 KPAPSIESQLDIVLEHYQAIVDY 271
>sp|P0ABT5|DUSB_ECOLI tRNA-dihydrouridine synthase B OS=Escherichia coli (strain K12)
GN=dusB PE=3 SV=1
Length = 321
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 13/232 (5%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKEDRPL 160
R +LI APM ++ PFR LC GA + M+ S ES+K R D P
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR---LRMVHIDEPG 65
Query: 161 F--VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ +DP+ + +AAR VE +DIN+GCP + R G+ L+ +VKS++
Sbjct: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125
Query: 218 EKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRAD 274
++ ++VPV+ KIR P ++ + A++ ED G L +HGRTR +G+ A+
Sbjct: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE---AE 182
Query: 275 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+++I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P0ABT6|DUSB_ECOL6 tRNA-dihydrouridine synthase B OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusB PE=3 SV=1
Length = 321
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 13/232 (5%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKEDRPL 160
R +LI APM ++ PFR LC GA + M+ S ES+K R D P
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR---LRMVHIDEPG 65
Query: 161 F--VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ +DP+ + +AAR VE +DIN+GCP + R G+ L+ +VKS++
Sbjct: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125
Query: 218 EKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRAD 274
++ ++VPV+ KIR P ++ + A++ ED G L +HGRTR +G+ A+
Sbjct: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE---AE 182
Query: 275 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+++I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P0ABT7|DUSB_ECO57 tRNA-dihydrouridine synthase B OS=Escherichia coli O157:H7 GN=dusB
PE=3 SV=1
Length = 321
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 13/232 (5%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKEDRPL 160
R +LI APM ++ PFR LC GA + M+ S ES+K R D P
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR---LRMVHIDEPG 65
Query: 161 F--VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ +DP+ + +AAR VE +DIN+GCP + R G+ L+ +VKS++
Sbjct: 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125
Query: 218 EKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRAD 274
++ ++VPV+ KIR P ++ + A++ ED G L +HGRTR +G+ A+
Sbjct: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE---AE 182
Query: 275 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+++I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 13/230 (5%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR---IFTESEKYRNEEFATCKEDRPL 160
++ +APM ++ PFR LC + GA ++ M+ + TE + R A +
Sbjct: 11 RIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMSTNPDVWHTEKSRLRLAHHAEIGINA-- 68
Query: 161 FVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219
VQ ++P + AA+ Y +DIN+GCP + + G+ L+ LV +++
Sbjct: 69 -VQIAGSEPTEIAEAAKINVAYGAQIIDINMGCPAKKVNKKMAGSALLREPQLVARILDA 127
Query: 220 LALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWN 276
+ ++VPV+ KIR ++ ++ AK+ E AG S L +HGRTRD +G+ A++
Sbjct: 128 VVNAVDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIHGRTRDCLFNGQ---AEYE 184
Query: 277 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+IKAVK A+ +P++ANG++ + + L+ TG + V+ P LF
Sbjct: 185 SIKAVKQAVFMPIIANGDITSPQKAKDVLDYTGADAVMIGRGSFGRPWLF 234
>sp|Q83PZ5|DUSB_SHIFL tRNA-dihydrouridine synthase B OS=Shigella flexneri GN=dusB PE=3
SV=1
Length = 321
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 13/232 (5%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKEDRPL 160
R +LI APM ++ PFR LC GA + M+ S ES+K R D P
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR---LRMVHIDEPG 65
Query: 161 F--VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ + P+ + +AAR VE +DIN+GCP + R G+ L+ +VKS++
Sbjct: 66 IRTVQIAGSAPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSIL 125
Query: 218 EKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRAD 274
++ ++VPV+ KIR P ++ + A++ ED G L +HGRTR +G+ A+
Sbjct: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE---AE 182
Query: 275 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+++I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 183 YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 150/311 (48%), Gaps = 32/311 (10%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLF 161
+ ++++APM FR+ + +GA M+ + + + ++PL
Sbjct: 10 KNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGMLYIDEREKPLS 69
Query: 162 VQFCANDPEILLNAARRVE--PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219
+Q E L+ AA+ V+ D +DIN+GCP + + GA + + + +V
Sbjct: 70 LQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIYEMVSA 129
Query: 220 LALNLNVPVSCKIRVFPNLQD--TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 277
+ +N PV+ K+R+ + +K A+ +E AG +A+HGRTR + + A+W+
Sbjct: 130 VVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQM--YEGTANWDI 187
Query: 278 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 337
IK VK ++ IPV+ NG+V+ +D ++ L+ETG +GV+ + L NP + +RT +++
Sbjct: 188 IKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMI--YRTVQYL-- 243
Query: 338 SEEISKDGNLDQADLLVEYLKLCEKY----------PVPWRMIRSHVHKLLGEWFRIQPG 387
+ G L + + E + +C+ + V R +R H W+ G
Sbjct: 244 -----ETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKH-----AAWYL--KG 291
Query: 388 VREDLNAQNRL 398
V+ + N +N +
Sbjct: 292 VKGNANVRNEI 302
>sp|O52536|DUSB_KLEPN tRNA-dihydrouridine synthase B OS=Klebsiella pneumoniae GN=dusB
PE=3 SV=1
Length = 321
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 117/233 (50%), Gaps = 15/233 (6%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSR-IFTESEKYRNEEFATCKEDRPL 160
R +LI APM ++ PFR LC GA + M+ S ES+K R D P
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSR---LRMVHVDEPG 65
Query: 161 F--VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 217
VQ + P+ + AAR VE +DIN+GCP + R G+ L+ VKS++
Sbjct: 66 IRTVQIAGSVPKEMAAAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDQVKSIL 125
Query: 218 EKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD- 274
+ ++VPV+ KIR P ++ ++ A++ E+ G L +HGRTR F D
Sbjct: 126 TAVVKAVDVPVTLKIRTGWEPEHRNCVEIAQLAEECGIQALTIHGRTR----ACLFNGDA 181
Query: 275 -WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
+++I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q9KV66|DUSB_VIBCH tRNA-dihydrouridine synthase B OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=dusB PE=3
SV=2
Length = 322
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 5/225 (2%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
LIVAPM ++ PFR LC RYGA A + M+ E VQ
Sbjct: 12 LIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMVHEGESGIRSVQI 71
Query: 165 CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223
+DP+++ AA+ VE +DIN+GCP + + G+ L+ +++ +++ +
Sbjct: 72 AGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAVVNA 131
Query: 224 LNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 281
+NVPV+ K R + ++ + A++ ED G LA+HGRTR K A++++IKAV
Sbjct: 132 VNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACM--YKGEAEYDSIKAV 189
Query: 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
K A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 190 KAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIF 234
>sp|Q96G46|DUS3L_HUMAN tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens
GN=DUS3L PE=1 SV=2
Length = 650
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 123/252 (48%), Gaps = 23/252 (9%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDR--- 158
R KL +AP+ LPFR +C+R+GA+ M + T + + E+A K +
Sbjct: 304 RGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMA---VCTNLLQGQMSEWALLKRHQCED 360
Query: 159 PLFVQFCANDPEILLNAA----RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 214
VQ P+ + A R VE D+VDIN+GCP + + G LM+ +
Sbjct: 361 IFGVQLEGAFPDTMTKCAELLSRTVE--VDFVDINVGCPIDLVYKKGGGCALMNRSTKFQ 418
Query: 215 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM----LEDAGCSLLAVHGRTRDEKDGKK 270
+V + L+VP++ KIR +Q+ + A L D G +L+ +HGR+R+++ K
Sbjct: 419 QIVRGMNQVLDVPLTVKIRT--GVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKL 476
Query: 271 FRADWNAI-KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329
ADW I + V+ A +P+ NG++ ED + + +TG G++ A L P LF
Sbjct: 477 --ADWQYIEECVQAASPMPLFGNGDILSFEDANRAM-QTGVTGIMIARGALLKPWLFTEI 533
Query: 330 RTA-EWIVGSEE 340
+ W + S E
Sbjct: 534 KEQRHWDISSSE 545
>sp|O52532|DUSB_SERMA tRNA-dihydrouridine synthase B OS=Serratia marcescens GN=dusB PE=3
SV=2
Length = 334
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 17/231 (7%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEE--FATCKEDRPLF- 161
LI APM ++ PFR LC GA A + ML S E +R ++ D P
Sbjct: 12 LIAAPMAGITDRPFRTLCHAMGAGMAVSEMLSS----NPEVWRTDKSRLRMVHSDEPGIR 67
Query: 162 -VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219
VQ DP+ + AAR V +DIN+GCP + R G+ L+ LVK ++
Sbjct: 68 SVQIAGCDPDDMAAAARINVASGAQLIDINMGCPAKKVNRKLAGSALLQYPDLVKRILHA 127
Query: 220 LALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD--W 275
+ ++VPV+ KIR P ++ ++ A++ ED G L +HGRTR F D +
Sbjct: 128 VVDAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR----ACLFNGDAEY 183
Query: 276 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
++I+AVK ++ IP++ANG++ + L+ TG + ++ + P +F
Sbjct: 184 DSIRAVKQSVSIPIIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q28BT8|DUS3L_XENTR tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus
tropicalis GN=dus3l PE=2 SV=2
Length = 639
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 19/250 (7%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRP-- 159
R KL +AP+ LPFR LC+R+GA+ M + + E+A K
Sbjct: 293 RNKLYLAPLTTCGNLPFRRLCKRFGADITCGEMAMCTNLLQGQP---SEWALLKRHHSED 349
Query: 160 -LFVQFCANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 216
VQ P+ + A + D+VDIN+GCP + + G LM+ + +
Sbjct: 350 IFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFEQI 409
Query: 217 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKM----LEDAGCSLLAVHGRTRDEKDGKKFR 272
V+ + L+VP++ KIR +Q+ I A L D G SL+ +HGR+R+++ K
Sbjct: 410 VKGMNSVLDVPLTVKIRT--GVQEKINIAHKLIPNLRDWGVSLVTLHGRSREQRYTK--L 465
Query: 273 ADWNAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331
ADW I + A +P+ NG++ ED + L +TG G++ A L P LF +
Sbjct: 466 ADWEYIAQCADIASPLPLFGNGDIISYEDANRAL-QTGVSGIMLARGALLKPWLFTEIKE 524
Query: 332 A-EWIVGSEE 340
W + S E
Sbjct: 525 QRHWDISSTE 534
>sp|O52533|DUSB_PROVU tRNA-dihydrouridine synthase B OS=Proteus vulgaris GN=dusB PE=3
SV=2
Length = 323
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 5/225 (2%)
Query: 105 LIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQF 164
LI APM ++ PFR LC GA + ML S E VQ
Sbjct: 12 LIAAPMAGVTDRPFRSLCYDMGAGMTVSEMLSSNPQVWQTDKSRLRMVHSDELGIRSVQI 71
Query: 165 CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223
+DP + AA+ + +DIN+GCP + + G+ L+ + LV ++ +
Sbjct: 72 AGSDPVDMAAAAKINADSGAQIIDINMGCPAKKVNKKLAGSALLRHPDLVAEILSAVVNA 131
Query: 224 LNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 281
++VPV+ KIR P+ ++ ++ AK+ E G L +HGRTR+ K A++++I+ V
Sbjct: 132 VDVPVTLKIRTGWSPDERNCVEIAKLAERCGIQALTIHGRTRECL--FKGEAEYDSIRTV 189
Query: 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326
K + IP++ANG++ + L+ TG + ++ + P +F
Sbjct: 190 KQNVSIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis
GN=dus3l PE=2 SV=1
Length = 640
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 119/250 (47%), Gaps = 19/250 (7%)
Query: 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRP-- 159
R KL +AP+ LPFR +C+R GA+ M + T + + E+A K
Sbjct: 294 RNKLYLAPLTTCGNLPFRRICKRLGADITCGEMA---MCTNLLQGQPSEWALLKRHHSED 350
Query: 160 -LFVQFCANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 216
VQ P+ + A + D+VDIN+GCP + + G LM+ + +
Sbjct: 351 IFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFEQI 410
Query: 217 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKM----LEDAGCSLLAVHGRTRDEKDGKKFR 272
V+ + L+VP++ KIR +Q+ + A L D G SL+ +HGR+R+++ K
Sbjct: 411 VKGMNSVLDVPLTVKIRT--GVQEKVNIAHKLIPNLRDWGVSLVTLHGRSREQRYTK--L 466
Query: 273 ADWNAI-KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331
A+W I + K A +P+ NG++ ED + L +TG GV+ A L P LF +
Sbjct: 467 ANWEYIDQCAKIASPVPLFGNGDIISYEDANRAL-QTGVAGVMLARGALFKPWLFTEIKE 525
Query: 332 A-EWIVGSEE 340
W + S E
Sbjct: 526 QRHWDISSTE 535
>sp|P44606|DUSC_HAEIN tRNA-dihydrouridine synthase C OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusC PE=3 SV=1
Length = 310
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 147 RNEEFATCKEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAF 205
+N+ F + P+ VQ P+ L NA R ++ +D+N GCP + N GA
Sbjct: 54 KNQGFTS--SGTPVRVQLLGQHPKCLAENAIRAIDLGSHGIDLNCGCPSKTVNGSNGGAA 111
Query: 206 LMDNLPLVKSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRT 262
L+ L+ + L A+ PVS K+R+ + ++ + A +E G + + VHGRT
Sbjct: 112 LLKQPELIYRATQALRRAVPSEFPVSVKVRLGWDDISQAFEIADAVEQGGATEITVHGRT 171
Query: 263 RDEKDGKKFRAD---WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319
+ DG +RAD W I V+ L IPV+ANG + H +D Q CL +TGC+ ++
Sbjct: 172 K--ADG--YRADRINWKKISEVRERLSIPVIANGEIWHWQDGQDCLSQTGCQDLMVGRGA 227
Query: 320 LENPAL 325
L P L
Sbjct: 228 LNIPNL 233
>sp|Q8XYX1|DUSC_RALSO tRNA-dihydrouridine synthase C OS=Ralstonia solanacearum (strain
GMI1000) GN=dusC PE=3 SV=1
Length = 326
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 12/190 (6%)
Query: 142 ESEKYRNEEFATCKEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRG 200
E+ + RN + P+ +Q +DPE L NAA+ +D+N GCP ++ R
Sbjct: 50 ETPEIRNGGYTA--SGTPMVIQLLGSDPEWLARNAAQAATVSPHGIDLNFGCPAKVVNRH 107
Query: 201 NYGAFLMDNLPLVKSLVEKL--ALNLNVPVSCKIRVFPNLQDT---IKYAKMLEDAGCSL 255
GA L+ L+ +V + A+ + V+ K+R+ + DT I A L + G +
Sbjct: 108 GGGAMLLATPELLHRIVSTVRAAVPARIAVTAKMRL--GVSDTSLAIACATALAEGGAAS 165
Query: 256 LAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315
L VH RTRD G + A W+ I + +A+R+PV+ANG V ++D +C +GC+ V+
Sbjct: 166 LVVHARTRDH--GYRPPAHWDWIARIADAVRVPVVANGEVWTVDDWARCRAVSGCDDVMI 223
Query: 316 AESLLENPAL 325
+ +P L
Sbjct: 224 GRGAVSDPFL 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,269,671
Number of Sequences: 539616
Number of extensions: 7313285
Number of successful extensions: 24700
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 465
Number of HSP's that attempted gapping in prelim test: 23925
Number of HSP's gapped (non-prelim): 910
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)