Query 013813
Match_columns 436
No_of_seqs 361 out of 2598
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2335 tRNA-dihydrouridine sy 100.0 5.9E-68 1.3E-72 524.8 28.8 311 94-420 10-327 (358)
2 COG0042 tRNA-dihydrouridine sy 100.0 3.1E-64 6.8E-69 505.7 31.3 305 99-412 7-319 (323)
3 PRK10550 tRNA-dihydrouridine s 100.0 5.1E-61 1.1E-65 480.5 32.6 294 104-410 2-310 (312)
4 PRK10415 tRNA-dihydrouridine s 100.0 5.5E-61 1.2E-65 482.6 32.6 303 102-412 9-318 (321)
5 PF01207 Dus: Dihydrouridine s 100.0 2.5E-62 5.4E-67 490.0 18.8 298 106-411 1-306 (309)
6 TIGR00742 yjbN tRNA dihydrouri 100.0 1.9E-60 4.1E-65 477.4 31.4 300 103-411 1-313 (318)
7 TIGR00737 nifR3_yhdG putative 100.0 5E-57 1.1E-61 453.6 32.5 304 102-412 7-316 (319)
8 PRK11815 tRNA-dihydrouridine s 100.0 3.9E-57 8.4E-62 456.8 30.9 290 99-396 7-309 (333)
9 cd02801 DUS_like_FMN Dihydrour 100.0 1.9E-48 4.2E-53 372.3 23.7 226 104-331 1-228 (231)
10 KOG2333 Uncharacterized conser 100.0 4.9E-48 1.1E-52 390.7 25.1 308 102-435 264-585 (614)
11 cd02911 arch_FMN Archeal FMN-b 100.0 2.5E-42 5.3E-47 332.8 19.3 211 104-330 1-232 (233)
12 TIGR00736 nifR3_rel_arch TIM-b 100.0 1.7E-35 3.7E-40 283.8 21.9 203 110-322 1-226 (231)
13 KOG2334 tRNA-dihydrouridine sy 100.0 5E-35 1.1E-39 293.2 20.8 261 102-379 10-290 (477)
14 TIGR01037 pyrD_sub1_fam dihydr 100.0 1.2E-34 2.6E-39 288.7 22.1 222 102-331 11-278 (300)
15 cd02940 DHPD_FMN Dihydropyrimi 100.0 3.9E-32 8.5E-37 271.0 15.2 262 46-330 1-296 (299)
16 cd04740 DHOD_1B_like Dihydroor 100.0 1.4E-30 3.1E-35 258.9 22.1 223 102-331 10-275 (296)
17 PRK08318 dihydropyrimidine deh 100.0 3.8E-31 8.1E-36 275.3 13.9 263 44-331 1-298 (420)
18 cd04734 OYE_like_3_FMN Old yel 100.0 1.2E-28 2.6E-33 250.3 21.8 232 102-333 13-332 (343)
19 PRK07259 dihydroorotate dehydr 100.0 7.8E-29 1.7E-33 247.2 18.1 169 156-331 90-278 (301)
20 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 3.2E-28 6.9E-33 241.0 21.8 169 156-330 97-287 (289)
21 PRK13523 NADPH dehydrogenase N 100.0 4.3E-28 9.3E-33 245.6 20.1 230 102-332 15-321 (337)
22 cd04733 OYE_like_2_FMN Old yel 100.0 3.5E-27 7.5E-32 239.1 20.9 230 102-331 14-337 (338)
23 cd04741 DHOD_1A_like Dihydroor 100.0 1.9E-27 4.2E-32 236.7 17.3 250 66-331 6-288 (294)
24 PLN02495 oxidoreductase, actin 99.9 1.3E-27 2.8E-32 244.7 15.5 266 41-330 5-314 (385)
25 cd02803 OYE_like_FMN_family Ol 99.9 7.7E-27 1.7E-31 234.8 18.8 229 102-330 12-325 (327)
26 cd04738 DHOD_2_like Dihydrooro 99.9 4.4E-27 9.5E-32 237.5 16.3 169 156-331 127-325 (327)
27 cd04735 OYE_like_4_FMN Old yel 99.9 3E-26 6.5E-31 233.6 19.6 230 102-332 14-329 (353)
28 cd02931 ER_like_FMN Enoate red 99.9 6.4E-26 1.4E-30 233.4 22.0 231 102-332 13-351 (382)
29 cd02932 OYE_YqiM_FMN Old yello 99.9 8.5E-26 1.8E-30 228.8 21.2 229 102-330 13-334 (336)
30 cd02933 OYE_like_FMN Old yello 99.9 1.2E-25 2.6E-30 227.9 22.0 225 102-332 14-330 (338)
31 PRK05286 dihydroorotate dehydr 99.9 1.4E-25 3.1E-30 228.0 20.2 169 156-331 136-334 (344)
32 cd02930 DCR_FMN 2,4-dienoyl-Co 99.9 2.1E-25 4.6E-30 227.4 19.0 231 102-332 13-322 (353)
33 cd04747 OYE_like_5_FMN Old yel 99.9 3.2E-25 6.9E-30 226.2 19.6 228 102-332 13-344 (361)
34 cd04739 DHOD_like Dihydroorota 99.9 2E-25 4.2E-30 225.3 14.2 256 46-330 1-281 (325)
35 cd02929 TMADH_HD_FMN Trimethyl 99.9 1.5E-24 3.1E-29 222.5 20.3 164 169-333 149-336 (370)
36 PRK08255 salicylyl-CoA 5-hydro 99.9 4.6E-24 9.9E-29 237.2 21.0 228 102-329 411-731 (765)
37 PRK07565 dihydroorotate dehydr 99.9 1.4E-24 3.1E-29 219.8 14.6 252 46-330 2-283 (334)
38 COG1902 NemA NADH:flavin oxido 99.9 1.7E-22 3.8E-27 205.9 21.4 231 102-332 18-334 (363)
39 PRK10605 N-ethylmaleimide redu 99.9 1.1E-21 2.5E-26 200.6 21.1 226 102-332 15-337 (362)
40 cd02809 alpha_hydroxyacid_oxid 99.9 1.2E-21 2.6E-26 195.6 19.9 187 102-320 64-260 (299)
41 PF00724 Oxidored_FMN: NADH:fl 99.9 4.6E-22 1E-26 202.0 16.2 231 102-332 14-337 (341)
42 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 7.1E-22 1.5E-26 201.5 13.8 174 102-321 44-221 (369)
43 PRK02506 dihydroorotate dehydr 99.9 1E-21 2.2E-26 197.0 13.5 257 46-330 1-285 (310)
44 COG0167 PyrD Dihydroorotate de 99.9 1.2E-21 2.7E-26 194.8 13.5 168 156-331 95-286 (310)
45 TIGR01036 pyrD_sub2 dihydrooro 99.9 1.8E-20 3.8E-25 190.0 20.0 169 155-330 132-332 (335)
46 PLN02411 12-oxophytodienoate r 99.8 2.3E-19 4.9E-24 185.4 20.5 230 102-332 24-358 (391)
47 PF01180 DHO_dh: Dihydroorotat 99.8 1.5E-20 3.2E-25 187.3 6.6 169 157-331 96-289 (295)
48 PLN02826 dihydroorotate dehydr 99.8 3.8E-18 8.3E-23 176.6 18.2 166 158-330 187-385 (409)
49 TIGR02151 IPP_isom_2 isopenten 99.8 8.7E-18 1.9E-22 170.3 20.1 207 102-322 53-289 (333)
50 PRK05437 isopentenyl pyrophosp 99.8 2.9E-17 6.3E-22 167.6 21.5 206 102-321 60-295 (352)
51 cd02811 IDI-2_FMN Isopentenyl- 99.7 7.3E-16 1.6E-20 155.8 20.9 207 102-321 52-289 (326)
52 cd04730 NPD_like 2-Nitropropan 99.7 9.4E-16 2E-20 147.2 18.0 190 102-325 2-194 (236)
53 PRK08649 inosine 5-monophospha 99.7 1.5E-16 3.3E-21 162.8 13.0 169 102-319 47-218 (368)
54 cd04722 TIM_phosphate_binding 99.6 1.1E-14 2.3E-19 133.2 18.4 193 105-317 1-200 (200)
55 PRK14024 phosphoribosyl isomer 99.6 1.8E-15 4E-20 146.8 13.7 150 161-329 77-235 (241)
56 PRK04180 pyridoxal biosynthesi 99.6 1.5E-15 3.3E-20 148.5 11.9 140 173-324 27-242 (293)
57 TIGR03151 enACPred_II putative 99.6 1.2E-14 2.6E-19 145.8 18.7 192 98-325 6-199 (307)
58 PRK01033 imidazole glycerol ph 99.6 9.9E-15 2.2E-19 143.0 14.2 143 162-323 77-233 (258)
59 cd00381 IMPDH IMPDH: The catal 99.6 1.2E-13 2.6E-18 139.6 19.1 193 102-325 34-235 (325)
60 cd04731 HisF The cyclase subun 99.5 8E-14 1.7E-18 135.0 14.0 151 157-327 71-234 (243)
61 TIGR03572 WbuZ glycosyl amidat 99.5 9.9E-14 2.1E-18 133.4 14.1 142 157-319 74-230 (232)
62 PRK00748 1-(5-phosphoribosyl)- 99.5 1.7E-13 3.7E-18 131.5 13.4 143 162-322 77-226 (233)
63 cd04732 HisA HisA. Phosphorib 99.5 2.6E-13 5.7E-18 130.2 13.3 147 160-326 74-229 (234)
64 PRK05458 guanosine 5'-monophos 99.5 1.2E-11 2.5E-16 124.8 22.3 189 102-321 37-235 (326)
65 TIGR00007 phosphoribosylformim 99.4 1.9E-12 4.1E-17 124.2 15.7 142 161-322 74-224 (230)
66 PRK13585 1-(5-phosphoribosyl)- 99.4 1.6E-12 3.4E-17 125.6 14.7 152 160-330 77-236 (241)
67 KOG1799 Dihydropyrimidine dehy 99.4 1.3E-13 2.8E-18 136.4 5.1 244 66-323 110-392 (471)
68 PRK02083 imidazole glycerol ph 99.4 2.8E-12 6E-17 125.2 13.8 141 162-322 77-233 (253)
69 TIGR02708 L_lactate_ox L-lacta 99.4 2.3E-11 5E-16 124.4 19.6 200 102-321 80-317 (367)
70 TIGR00735 hisF imidazoleglycer 99.4 7.8E-12 1.7E-16 122.3 13.7 141 162-322 77-235 (254)
71 cd04737 LOX_like_FMN L-Lactate 99.4 1.3E-11 2.9E-16 125.8 15.7 202 102-323 72-312 (351)
72 KOG1436 Dihydroorotate dehydro 99.4 3.4E-11 7.5E-16 118.3 17.4 229 95-331 87-376 (398)
73 cd02922 FCB2_FMN Flavocytochro 99.3 8.1E-11 1.8E-15 119.9 18.7 206 102-324 64-308 (344)
74 PF03060 NMO: Nitronate monoox 99.3 1.1E-10 2.4E-15 118.5 18.4 196 96-324 4-227 (330)
75 KOG0134 NADH:flavin oxidoreduc 99.2 7.6E-11 1.6E-15 120.2 12.6 164 169-332 173-364 (400)
76 TIGR01306 GMP_reduct_2 guanosi 99.2 1.3E-09 2.8E-14 109.8 20.4 190 102-321 34-232 (321)
77 COG0106 HisA Phosphoribosylfor 99.2 2.4E-10 5.2E-15 109.8 13.9 152 157-328 73-233 (241)
78 PRK06843 inosine 5-monophospha 99.2 1.4E-09 3.1E-14 112.5 18.9 135 166-323 149-292 (404)
79 cd04736 MDH_FMN Mandelate dehy 99.1 1.8E-09 4E-14 110.3 18.0 198 103-321 65-323 (361)
80 PRK02083 imidazole glycerol ph 99.1 2.2E-10 4.8E-15 111.8 9.2 90 239-332 30-119 (253)
81 cd04743 NPD_PKS 2-Nitropropane 99.1 3.3E-09 7.1E-14 106.7 17.2 188 102-325 2-211 (320)
82 cd04731 HisF The cyclase subun 99.1 3.1E-10 6.7E-15 110.0 9.1 90 238-331 26-115 (243)
83 PLN02535 glycolate oxidase 99.1 1.4E-09 3E-14 111.3 14.2 204 102-324 72-315 (364)
84 cd03332 LMO_FMN L-Lactate 2-mo 99.1 5.2E-09 1.1E-13 107.9 17.1 202 102-321 85-342 (383)
85 PLN02979 glycolate oxidase 99.0 1.9E-08 4.1E-13 102.5 18.6 201 102-321 69-312 (366)
86 PRK11197 lldD L-lactate dehydr 99.0 1.5E-08 3.2E-13 104.4 17.9 201 102-321 70-334 (381)
87 PLN02446 (5-phosphoribosyl)-5- 99.0 8.3E-09 1.8E-13 101.0 14.9 150 158-326 82-250 (262)
88 PF01070 FMN_dh: FMN-dependent 99.0 1.1E-08 2.4E-13 104.8 16.3 199 102-321 58-314 (356)
89 PF00977 His_biosynth: Histidi 99.0 3.3E-09 7.2E-14 102.3 11.5 145 158-322 72-226 (229)
90 PLN02493 probable peroxisomal 99.0 1.7E-08 3.6E-13 103.5 17.1 201 102-321 70-313 (367)
91 PRK13125 trpA tryptophan synth 99.0 1.2E-08 2.6E-13 99.3 15.3 148 167-321 15-219 (244)
92 cd04742 NPD_FabD 2-Nitropropan 99.0 3.3E-08 7.2E-13 102.7 18.2 214 96-324 6-256 (418)
93 TIGR01919 hisA-trpF 1-(5-phosp 99.0 1E-08 2.2E-13 100.0 13.5 151 158-328 73-237 (243)
94 TIGR00735 hisF imidazoleglycer 98.9 2.6E-09 5.6E-14 104.5 9.2 89 239-331 30-118 (254)
95 cd04729 NanE N-acetylmannosami 98.9 1.4E-08 2.9E-13 97.1 13.8 127 174-324 84-214 (219)
96 cd03319 L-Ala-DL-Glu_epimerase 98.9 3.5E-08 7.6E-13 99.2 17.2 136 155-316 121-258 (316)
97 PRK13587 1-(5-phosphoribosyl)- 98.9 1.8E-08 3.9E-13 97.6 14.2 141 160-321 77-226 (234)
98 cd02808 GltS_FMN Glutamate syn 98.9 3.6E-08 7.8E-13 102.4 17.0 113 208-324 196-322 (392)
99 PRK14114 1-(5-phosphoribosyl)- 98.9 1.7E-08 3.6E-13 98.2 13.7 145 161-326 75-233 (241)
100 cd04732 HisA HisA. Phosphorib 98.9 5.7E-09 1.2E-13 100.1 9.6 89 239-331 29-117 (234)
101 PRK01130 N-acetylmannosamine-6 98.9 3E-08 6.4E-13 94.8 13.7 122 176-321 82-207 (221)
102 cd04723 HisA_HisF Phosphoribos 98.9 4E-08 8.7E-13 95.0 14.6 142 160-323 79-225 (233)
103 TIGR00343 pyridoxal 5'-phospha 98.9 1.2E-07 2.5E-12 93.3 17.8 134 177-322 24-234 (287)
104 PF00478 IMPDH: IMP dehydrogen 98.9 3.1E-08 6.6E-13 100.9 14.0 198 102-321 37-245 (352)
105 PF04131 NanE: Putative N-acet 98.9 2.3E-08 5E-13 93.0 11.4 129 171-327 53-183 (192)
106 cd04727 pdxS PdxS is a subunit 98.8 8.8E-08 1.9E-12 94.1 15.9 183 111-323 13-232 (283)
107 cd00945 Aldolase_Class_I Class 98.8 3.2E-07 6.9E-12 84.7 18.6 143 157-316 48-201 (201)
108 COG0107 HisF Imidazoleglycerol 98.8 4.2E-08 9E-13 93.4 11.2 134 166-316 80-229 (256)
109 TIGR02814 pfaD_fam PfaD family 98.8 2.8E-07 6E-12 96.5 18.2 207 96-324 11-261 (444)
110 cd00331 IGPS Indole-3-glycerol 98.8 4.8E-07 1.1E-11 86.2 18.2 139 157-327 72-212 (217)
111 COG2070 Dioxygenases related t 98.8 1.1E-07 2.4E-12 96.8 14.2 190 102-324 14-221 (336)
112 PRK13586 1-(5-phosphoribosyl)- 98.8 1.4E-07 3.1E-12 91.3 13.9 140 162-322 76-224 (232)
113 TIGR01305 GMP_reduct_1 guanosi 98.7 7.2E-07 1.6E-11 89.9 18.8 189 103-318 46-243 (343)
114 PLN02617 imidazole glycerol ph 98.7 3.4E-07 7.4E-12 98.4 16.4 149 160-316 315-512 (538)
115 TIGR00734 hisAF_rel hisA/hisF 98.7 4.9E-07 1.1E-11 86.9 15.6 132 162-322 80-219 (221)
116 PTZ00314 inosine-5'-monophosph 98.7 4.2E-07 9.1E-12 97.1 16.1 143 158-322 228-379 (495)
117 COG0107 HisF Imidazoleglycerol 98.7 4.9E-08 1.1E-12 92.9 7.7 90 237-330 28-117 (256)
118 PRK05096 guanosine 5'-monophos 98.7 1.2E-06 2.6E-11 88.3 17.6 191 103-323 47-249 (346)
119 TIGR02129 hisA_euk phosphoribo 98.7 4.7E-07 1E-11 88.4 14.4 143 159-321 76-237 (253)
120 PLN02274 inosine-5'-monophosph 98.7 6.3E-07 1.4E-11 95.9 16.6 136 165-322 243-386 (505)
121 TIGR03572 WbuZ glycosyl amidat 98.7 9.5E-08 2.1E-12 92.0 9.2 89 239-331 30-118 (232)
122 cd04728 ThiG Thiazole synthase 98.6 1E-06 2.2E-11 85.2 15.1 141 160-321 65-209 (248)
123 TIGR00262 trpA tryptophan synt 98.6 6.2E-07 1.3E-11 88.1 13.9 159 159-320 11-231 (256)
124 TIGR01302 IMP_dehydrog inosine 98.6 1.4E-06 3E-11 92.2 16.8 141 164-326 218-366 (450)
125 PLN02591 tryptophan synthase 98.6 1.5E-06 3.2E-11 85.1 14.4 152 167-321 13-223 (250)
126 PRK00748 1-(5-phosphoribosyl)- 98.5 3.1E-07 6.7E-12 88.2 9.2 89 239-331 30-118 (233)
127 PRK00208 thiG thiazole synthas 98.5 2.7E-06 5.8E-11 82.4 15.4 142 159-321 64-209 (250)
128 COG0214 SNZ1 Pyridoxine biosyn 98.5 8.8E-07 1.9E-11 84.4 11.6 133 177-321 34-242 (296)
129 CHL00200 trpA tryptophan synth 98.5 1.5E-06 3.3E-11 85.6 13.7 162 157-321 14-236 (263)
130 cd04724 Tryptophan_synthase_al 98.5 1.8E-06 4E-11 84.0 13.9 148 167-321 11-220 (242)
131 COG1304 idi Isopentenyl diphos 98.5 9.3E-07 2E-11 90.6 11.7 105 208-321 201-307 (360)
132 KOG0538 Glycolate oxidase [Ene 98.5 2.6E-06 5.6E-11 84.2 13.5 101 212-321 210-312 (363)
133 PRK00507 deoxyribose-phosphate 98.5 3.6E-06 7.7E-11 81.0 14.3 125 174-318 79-210 (221)
134 PRK13585 1-(5-phosphoribosyl)- 98.5 6E-07 1.3E-11 86.8 9.0 90 239-332 32-121 (241)
135 cd03315 MLE_like Muconate lact 98.5 8.5E-06 1.8E-10 80.0 17.0 133 158-316 75-210 (265)
136 TIGR01163 rpe ribulose-phospha 98.4 4.1E-06 8.8E-11 78.8 13.2 147 161-327 2-204 (210)
137 PRK13111 trpA tryptophan synth 98.4 5.9E-06 1.3E-10 81.3 14.4 159 159-321 13-233 (258)
138 PRK14024 phosphoribosyl isomer 98.4 1E-06 2.2E-11 85.7 8.9 88 239-331 32-119 (241)
139 PRK07695 transcriptional regul 98.4 6.8E-06 1.5E-10 77.5 14.2 79 244-324 107-185 (201)
140 PRK01033 imidazole glycerol ph 98.4 1.5E-06 3.2E-11 85.4 10.0 89 239-331 30-118 (258)
141 cd03316 MR_like Mandelate race 98.4 7.3E-06 1.6E-10 83.7 15.3 141 156-316 125-270 (357)
142 PRK07107 inosine 5-monophospha 98.4 5.6E-06 1.2E-10 88.6 14.7 133 170-322 242-387 (502)
143 TIGR01949 AroFGH_arch predicte 98.4 1.9E-05 4.2E-10 77.4 17.4 147 156-327 69-238 (258)
144 KOG1606 Stationary phase-induc 98.4 7.1E-07 1.5E-11 83.8 6.7 126 192-329 51-251 (296)
145 TIGR01769 GGGP geranylgeranylg 98.4 1.6E-05 3.4E-10 75.6 16.0 72 239-316 134-205 (205)
146 COG3010 NanE Putative N-acetyl 98.4 4E-06 8.7E-11 78.7 11.5 77 245-326 140-218 (229)
147 PRK00278 trpC indole-3-glycero 98.4 4.1E-05 8.9E-10 75.4 19.1 140 156-327 110-251 (260)
148 TIGR01303 IMP_DH_rel_1 IMP deh 98.3 4.6E-06 1E-10 88.7 13.1 141 158-321 213-362 (475)
149 PRK04128 1-(5-phosphoribosyl)- 98.3 1.4E-06 3E-11 84.2 8.3 86 240-331 31-116 (228)
150 PRK07226 fructose-bisphosphate 98.3 1E-05 2.2E-10 79.8 14.6 145 157-326 73-241 (267)
151 PRK13587 1-(5-phosphoribosyl)- 98.3 1.6E-06 3.4E-11 84.1 8.7 89 239-331 31-120 (234)
152 PRK05567 inosine 5'-monophosph 98.3 1.1E-05 2.3E-10 86.3 15.7 139 160-321 218-365 (486)
153 PRK04128 1-(5-phosphoribosyl)- 98.3 5E-06 1.1E-10 80.3 12.0 130 162-322 76-217 (228)
154 PF01645 Glu_synthase: Conserv 98.3 4.3E-06 9.3E-11 85.9 10.9 112 207-322 184-309 (368)
155 TIGR01304 IMP_DH_rel_2 IMP deh 98.3 9.9E-06 2.1E-10 83.5 13.2 138 169-324 141-292 (369)
156 TIGR00007 phosphoribosylformim 98.3 3.3E-06 7.2E-11 81.0 9.2 89 239-331 28-116 (230)
157 PRK07807 inosine 5-monophospha 98.3 1E-05 2.2E-10 86.2 13.5 145 158-324 215-367 (479)
158 TIGR00126 deoC deoxyribose-pho 98.3 1.6E-05 3.5E-10 75.9 13.4 129 170-316 71-204 (211)
159 PRK08649 inosine 5-monophospha 98.3 1.6E-05 3.5E-10 81.9 14.3 136 172-325 143-294 (368)
160 cd00958 DhnA Class I fructose- 98.2 5.4E-05 1.2E-09 72.9 16.9 128 175-326 82-224 (235)
161 cd00429 RPE Ribulose-5-phospha 98.2 2.3E-05 5.1E-10 73.5 13.7 152 160-328 2-206 (211)
162 TIGR03128 RuMP_HxlA 3-hexulose 98.2 0.00012 2.7E-09 68.9 18.0 142 157-324 52-194 (206)
163 PF00977 His_biosynth: Histidi 98.2 2E-06 4.3E-11 83.0 5.7 89 239-331 29-117 (229)
164 PRK14114 1-(5-phosphoribosyl)- 98.2 4.9E-06 1.1E-10 81.1 8.4 87 239-330 30-116 (241)
165 PF03437 BtpA: BtpA family; I 98.2 4.3E-05 9.4E-10 74.9 14.8 154 157-327 80-238 (254)
166 COG0274 DeoC Deoxyribose-phosp 98.2 3.1E-05 6.7E-10 74.0 12.7 132 166-314 72-210 (228)
167 PLN02334 ribulose-phosphate 3- 98.1 5.5E-05 1.2E-09 72.9 13.9 143 156-326 64-212 (229)
168 PF00290 Trp_syntA: Tryptophan 98.1 2.2E-05 4.8E-10 77.2 11.2 160 158-321 10-231 (259)
169 cd02812 PcrB_like PcrB_like pr 98.1 1.4E-05 3.1E-10 76.6 9.0 85 236-329 132-217 (219)
170 TIGR02129 hisA_euk phosphoribo 98.1 1.1E-05 2.3E-10 79.0 8.3 81 240-331 38-123 (253)
171 PLN02617 imidazole glycerol ph 98.1 1E-05 2.2E-10 87.2 8.7 85 238-323 266-361 (538)
172 PRK08883 ribulose-phosphate 3- 98.1 6.6E-05 1.4E-09 72.2 13.4 144 160-324 2-203 (220)
173 PRK05283 deoxyribose-phosphate 98.1 5.6E-05 1.2E-09 74.1 13.0 122 170-307 84-216 (257)
174 PLN02446 (5-phosphoribosyl)-5- 98.1 1.1E-05 2.5E-10 79.1 8.0 84 239-331 43-130 (262)
175 cd00959 DeoC 2-deoxyribose-5-p 98.1 8.9E-05 1.9E-09 70.2 13.7 123 173-313 73-200 (203)
176 COG0106 HisA Phosphoribosylfor 98.0 1.5E-05 3.3E-10 77.0 8.0 89 239-331 31-119 (241)
177 COG0159 TrpA Tryptophan syntha 98.0 0.00016 3.4E-09 71.1 15.0 161 158-321 17-238 (265)
178 PRK05581 ribulose-phosphate 3- 98.0 9E-05 1.9E-09 70.3 13.1 151 160-327 6-209 (220)
179 PRK13586 1-(5-phosphoribosyl)- 98.0 2.2E-05 4.8E-10 76.1 8.6 88 239-331 30-117 (232)
180 cd00405 PRAI Phosphoribosylant 98.0 0.0008 1.7E-08 63.5 18.8 183 112-325 5-190 (203)
181 cd04726 KGPDC_HPS 3-Keto-L-gul 98.0 0.00038 8.2E-09 65.2 16.5 142 156-324 52-194 (202)
182 TIGR01919 hisA-trpF 1-(5-phosp 98.0 3.3E-05 7.2E-10 75.4 9.5 88 239-331 31-118 (243)
183 PRK07028 bifunctional hexulose 98.0 0.00046 9.9E-09 72.7 18.7 134 163-324 65-198 (430)
184 cd04723 HisA_HisF Phosphoribos 98.0 2.7E-05 5.9E-10 75.4 8.5 87 239-331 35-121 (233)
185 TIGR00259 thylakoid_BtpA membr 98.0 0.00017 3.7E-09 70.9 14.1 150 157-324 79-234 (257)
186 PF01791 DeoC: DeoC/LacD famil 97.9 3.1E-05 6.6E-10 74.9 8.6 134 172-321 79-235 (236)
187 PF04481 DUF561: Protein of un 97.9 0.00019 4.1E-09 68.2 13.2 149 156-319 60-217 (242)
188 PF05690 ThiG: Thiazole biosyn 97.9 0.00049 1.1E-08 66.3 14.9 147 156-322 61-210 (247)
189 cd00564 TMP_TenI Thiamine mono 97.8 0.00011 2.4E-09 67.6 10.1 80 245-326 108-188 (196)
190 CHL00162 thiG thiamin biosynth 97.8 0.00057 1.2E-08 66.5 15.2 141 160-321 73-223 (267)
191 TIGR01768 GGGP-family geranylg 97.8 9.8E-05 2.1E-09 71.1 9.3 85 239-329 135-221 (223)
192 PTZ00170 D-ribulose-5-phosphat 97.8 0.0006 1.3E-08 65.9 14.6 144 160-324 9-209 (228)
193 COG0434 SgcQ Predicted TIM-bar 97.8 0.0017 3.6E-08 62.6 16.9 191 115-320 34-236 (263)
194 PRK13307 bifunctional formalde 97.8 0.0031 6.7E-08 65.6 20.1 141 156-324 225-366 (391)
195 cd00377 ICL_PEPM Members of th 97.8 0.0018 3.9E-08 63.2 17.5 193 110-320 13-230 (243)
196 PF00218 IGPS: Indole-3-glycer 97.7 0.00033 7E-09 68.8 11.4 57 272-329 193-251 (254)
197 PRK00043 thiE thiamine-phospha 97.7 0.00022 4.8E-09 67.1 9.8 78 245-324 117-196 (212)
198 TIGR00734 hisAF_rel hisA/hisF 97.7 0.00014 3E-09 70.0 8.1 86 239-330 36-122 (221)
199 PRK13957 indole-3-glycerol-pho 97.7 0.00092 2E-08 65.4 13.5 56 272-329 186-243 (247)
200 PRK07565 dihydroorotate dehydr 97.7 0.00058 1.3E-08 69.5 12.7 106 210-316 86-197 (334)
201 PRK09140 2-dehydro-3-deoxy-6-p 97.6 0.003 6.5E-08 60.2 16.4 149 157-323 9-186 (206)
202 KOG2334 tRNA-dihydrouridine sy 97.6 1.8E-05 4E-10 81.2 0.7 135 185-328 289-423 (477)
203 PRK04169 geranylgeranylglycery 97.6 0.00047 1E-08 66.8 10.2 81 238-324 139-221 (232)
204 TIGR00693 thiE thiamine-phosph 97.6 0.0028 6.1E-08 59.1 15.1 77 246-324 110-188 (196)
205 cd00452 KDPG_aldolase KDPG and 97.5 0.0017 3.7E-08 60.7 13.1 143 158-320 4-175 (190)
206 PRK06806 fructose-bisphosphate 97.5 0.0026 5.7E-08 63.4 14.8 81 240-322 154-236 (281)
207 COG2022 ThiG Uncharacterized e 97.5 0.0033 7.2E-08 60.4 14.1 134 166-320 79-215 (262)
208 TIGR01859 fruc_bis_ald_ fructo 97.5 0.0039 8.5E-08 62.2 15.2 79 240-320 154-234 (282)
209 PRK02615 thiamine-phosphate py 97.4 0.00073 1.6E-08 69.2 9.8 78 245-324 253-330 (347)
210 COG0352 ThiE Thiamine monophos 97.4 0.00076 1.6E-08 64.5 8.8 84 243-328 115-198 (211)
211 PRK06512 thiamine-phosphate py 97.4 0.002 4.3E-08 62.1 11.8 77 246-325 125-201 (221)
212 PRK08005 epimerase; Validated 97.4 0.0066 1.4E-07 58.1 14.8 148 160-324 3-199 (210)
213 PRK08745 ribulose-phosphate 3- 97.3 0.0081 1.8E-07 58.0 14.8 144 160-324 6-207 (223)
214 COG1646 Predicted phosphate-bi 97.3 0.0076 1.6E-07 58.1 14.3 56 271-329 178-233 (240)
215 PRK04302 triosephosphate isome 97.3 0.011 2.4E-07 56.7 15.7 126 180-327 83-213 (223)
216 PTZ00314 inosine-5'-monophosph 97.3 0.0091 2E-07 64.2 16.5 69 240-316 241-310 (495)
217 PRK11750 gltB glutamate syntha 97.3 0.0014 3E-08 77.1 10.7 112 209-325 979-1105(1485)
218 PRK13802 bifunctional indole-3 97.3 0.0058 1.3E-07 67.9 15.1 144 168-329 71-253 (695)
219 cd03329 MR_like_4 Mandelate ra 97.2 0.0082 1.8E-07 61.9 15.2 124 168-315 143-270 (368)
220 COG0036 Rpe Pentose-5-phosphat 97.2 0.006 1.3E-07 58.5 13.0 147 158-325 4-206 (220)
221 cd03321 mandelate_racemase Man 97.2 0.0052 1.1E-07 63.0 13.5 135 157-316 130-267 (355)
222 PLN02460 indole-3-glycerol-pho 97.1 0.0099 2.1E-07 60.6 14.2 136 179-330 149-331 (338)
223 cd06556 ICL_KPHMT Members of t 97.1 0.026 5.6E-07 55.1 16.6 163 110-316 16-209 (240)
224 PRK06801 hypothetical protein; 97.1 0.017 3.7E-07 57.8 15.6 77 243-321 160-238 (286)
225 PF02581 TMP-TENI: Thiamine mo 97.1 0.0015 3.3E-08 60.5 7.6 73 245-319 108-180 (180)
226 PRK11840 bifunctional sulfur c 97.1 0.016 3.6E-07 58.6 14.7 137 167-323 147-285 (326)
227 COG0134 TrpC Indole-3-glycerol 97.0 0.0056 1.2E-07 60.0 10.9 112 217-329 99-249 (254)
228 PF00834 Ribul_P_3_epim: Ribul 97.0 0.0042 9E-08 59.0 9.6 142 160-322 2-200 (201)
229 PRK06552 keto-hydroxyglutarate 96.9 0.019 4.2E-07 55.0 13.4 146 157-320 12-187 (213)
230 PLN02274 inosine-5'-monophosph 96.9 0.03 6.5E-07 60.4 16.1 71 239-316 247-317 (505)
231 PRK06852 aldolase; Validated 96.9 0.081 1.8E-06 53.4 18.1 106 212-324 155-273 (304)
232 cd04739 DHOD_like Dihydroorota 96.9 0.015 3.3E-07 59.1 13.0 105 211-316 85-195 (325)
233 PRK09722 allulose-6-phosphate 96.8 0.029 6.2E-07 54.4 14.0 145 160-321 5-203 (229)
234 cd00408 DHDPS-like Dihydrodipi 96.8 0.02 4.4E-07 56.5 13.3 134 168-315 16-158 (281)
235 PRK07455 keto-hydroxyglutarate 96.8 0.041 8.9E-07 51.6 14.5 146 157-321 11-185 (187)
236 PRK08999 hypothetical protein; 96.8 0.0055 1.2E-07 61.5 9.1 73 245-319 239-311 (312)
237 PRK09427 bifunctional indole-3 96.8 0.024 5.2E-07 60.2 14.3 57 272-330 194-252 (454)
238 PRK13397 3-deoxy-7-phosphohept 96.8 0.02 4.4E-07 56.1 12.6 187 102-316 15-219 (250)
239 TIGR01361 DAHP_synth_Bsub phos 96.8 0.021 4.5E-07 56.4 12.8 110 202-317 114-230 (260)
240 PRK07315 fructose-bisphosphate 96.7 0.053 1.1E-06 54.5 15.4 71 245-321 159-237 (293)
241 PRK03512 thiamine-phosphate py 96.7 0.011 2.5E-07 56.4 10.2 81 245-327 115-197 (211)
242 PLN02424 ketopantoate hydroxym 96.7 0.19 4E-06 51.2 19.1 161 97-293 30-224 (332)
243 cd03325 D-galactonate_dehydrat 96.7 0.038 8.3E-07 56.6 14.7 143 157-316 112-257 (352)
244 cd03324 rTSbeta_L-fuconate_deh 96.7 0.043 9.4E-07 57.7 15.3 124 166-315 194-323 (415)
245 cd00331 IGPS Indole-3-glycerol 96.7 0.0065 1.4E-07 57.8 8.4 77 238-321 30-106 (217)
246 KOG0623 Glutamine amidotransfe 96.7 0.0041 8.8E-08 62.7 6.9 72 240-314 442-513 (541)
247 TIGR02320 PEP_mutase phosphoen 96.7 0.063 1.4E-06 53.7 15.4 151 156-320 77-244 (285)
248 PRK07709 fructose-bisphosphate 96.7 0.09 1.9E-06 52.6 16.3 161 157-319 42-236 (285)
249 COG0069 GltB Glutamate synthas 96.6 0.0086 1.9E-07 63.5 9.4 109 209-322 286-409 (485)
250 PRK00311 panB 3-methyl-2-oxobu 96.6 0.083 1.8E-06 52.3 15.7 150 110-293 19-203 (264)
251 PF01884 PcrB: PcrB family; I 96.6 0.0018 3.9E-08 62.7 3.9 69 250-324 151-219 (230)
252 cd00381 IMPDH IMPDH: The catal 96.6 0.015 3.3E-07 59.2 10.9 94 210-316 69-163 (325)
253 cd03328 MR_like_3 Mandelate ra 96.6 0.044 9.6E-07 56.2 14.2 122 168-315 138-264 (352)
254 TIGR02317 prpB methylisocitrat 96.6 0.058 1.3E-06 54.0 14.4 208 96-320 5-233 (285)
255 PRK05437 isopentenyl pyrophosp 96.6 0.021 4.6E-07 58.7 11.6 111 204-316 99-217 (352)
256 KOG2550 IMP dehydrogenase/GMP 96.6 0.022 4.8E-07 58.9 11.5 121 174-317 255-384 (503)
257 PRK12595 bifunctional 3-deoxy- 96.6 0.028 6E-07 58.1 12.4 115 202-325 207-329 (360)
258 PRK14017 galactonate dehydrata 96.6 0.058 1.3E-06 55.9 14.9 142 158-316 114-258 (382)
259 PRK07259 dihydroorotate dehydr 96.6 0.12 2.5E-06 51.8 16.7 167 102-315 12-188 (301)
260 COG4948 L-alanine-DL-glutamate 96.6 0.047 1E-06 56.3 14.2 123 168-315 143-268 (372)
261 PRK13813 orotidine 5'-phosphat 96.5 0.044 9.6E-07 52.0 12.9 149 158-325 4-201 (215)
262 PRK01222 N-(5'-phosphoribosyl) 96.5 0.38 8.2E-06 46.0 19.1 180 111-323 8-190 (210)
263 cd03326 MR_like_1 Mandelate ra 96.5 0.073 1.6E-06 55.4 15.3 124 167-315 159-289 (385)
264 TIGR01182 eda Entner-Doudoroff 96.5 0.053 1.2E-06 51.7 13.0 150 157-324 7-184 (204)
265 cd02809 alpha_hydroxyacid_oxid 96.5 0.031 6.6E-07 56.1 11.9 85 226-316 116-200 (299)
266 cd04727 pdxS PdxS is a subunit 96.5 0.042 9E-07 54.6 12.4 115 177-314 22-137 (283)
267 cd03320 OSBS o-Succinylbenzoat 96.5 0.077 1.7E-06 52.1 14.5 130 159-315 74-205 (263)
268 PF09370 TIM-br_sig_trns: TIM- 96.5 0.015 3.2E-07 57.2 9.1 150 156-318 80-248 (268)
269 cd03322 rpsA The starvation se 96.5 0.079 1.7E-06 54.6 15.0 126 158-316 116-244 (361)
270 PRK13398 3-deoxy-7-phosphohept 96.4 0.033 7E-07 55.2 11.3 110 202-318 116-233 (266)
271 TIGR02151 IPP_isom_2 isopenten 96.4 0.036 7.8E-07 56.6 11.8 111 204-316 92-210 (333)
272 PF01680 SOR_SNZ: SOR/SNZ fami 96.3 0.025 5.4E-07 52.4 9.3 109 182-313 34-142 (208)
273 cd06557 KPHMT-like Ketopantoat 96.3 0.12 2.6E-06 50.9 14.8 152 110-294 16-201 (254)
274 cd03327 MR_like_2 Mandelate ra 96.3 0.094 2E-06 53.5 14.6 140 158-316 109-252 (341)
275 PRK09250 fructose-bisphosphate 96.3 0.42 9.2E-06 49.0 18.9 156 156-324 124-326 (348)
276 PRK05567 inosine 5'-monophosph 96.3 0.079 1.7E-06 56.9 14.6 69 240-316 228-297 (486)
277 PRK11320 prpB 2-methylisocitra 96.3 0.11 2.3E-06 52.2 14.6 205 96-320 9-238 (292)
278 PRK08227 autoinducer 2 aldolas 96.3 0.065 1.4E-06 53.0 12.8 143 156-324 73-234 (264)
279 PLN02898 HMP-P kinase/thiamin- 96.3 0.017 3.7E-07 62.1 9.5 79 245-325 403-484 (502)
280 TIGR02534 mucon_cyclo muconate 96.3 0.16 3.4E-06 52.3 16.2 133 158-315 131-267 (368)
281 PRK15072 bifunctional D-altron 96.3 0.12 2.5E-06 54.2 15.1 142 164-315 123-286 (404)
282 COG0329 DapA Dihydrodipicolina 96.3 0.091 2E-06 52.9 13.8 132 168-313 23-163 (299)
283 TIGR00222 panB 3-methyl-2-oxob 96.2 0.19 4.1E-06 49.7 15.5 151 110-293 19-202 (263)
284 PRK12290 thiE thiamine-phospha 96.2 0.023 5E-07 59.7 9.6 78 245-324 313-400 (437)
285 PF04476 DUF556: Protein of un 96.2 0.18 4E-06 48.8 15.0 159 171-364 9-180 (235)
286 PF00478 IMPDH: IMP dehydrogen 96.2 0.017 3.6E-07 59.4 8.1 99 211-318 73-179 (352)
287 PRK08091 ribulose-phosphate 3- 96.2 0.27 5.8E-06 47.7 16.0 138 157-324 68-215 (228)
288 cd03318 MLE Muconate Lactonizi 96.2 0.2 4.4E-06 51.5 16.2 133 158-315 132-268 (365)
289 PRK07998 gatY putative fructos 96.2 0.14 3.1E-06 51.1 14.5 110 208-320 112-233 (283)
290 PLN02535 glycolate oxidase 96.2 0.052 1.1E-06 56.1 11.7 43 272-316 209-251 (364)
291 TIGR02319 CPEP_Pphonmut carbox 96.2 0.17 3.6E-06 50.9 15.0 208 96-320 8-237 (294)
292 cd00377 ICL_PEPM Members of th 96.1 0.066 1.4E-06 52.3 11.7 137 177-316 23-180 (243)
293 PF13714 PEP_mutase: Phosphoen 96.1 0.061 1.3E-06 52.4 11.3 144 156-320 68-223 (238)
294 PRK08673 3-deoxy-7-phosphohept 96.1 0.062 1.3E-06 55.0 11.8 109 202-317 182-298 (335)
295 cd00952 CHBPH_aldolase Trans-o 96.1 0.11 2.3E-06 52.5 13.5 125 168-306 27-161 (309)
296 cd03332 LMO_FMN L-Lactate 2-mo 96.1 0.055 1.2E-06 56.3 11.5 43 272-316 239-281 (383)
297 cd00945 Aldolase_Class_I Class 96.1 0.14 3E-06 47.0 13.2 129 168-318 11-151 (201)
298 PRK14057 epimerase; Provisiona 96.1 0.16 3.4E-06 50.1 14.0 146 156-324 18-229 (254)
299 TIGR00167 cbbA ketose-bisphosp 96.1 0.29 6.2E-06 49.1 16.0 161 157-319 42-239 (288)
300 COG0269 SgbH 3-hexulose-6-phos 96.0 0.024 5.2E-07 54.2 7.7 143 156-324 55-200 (217)
301 cd00950 DHDPS Dihydrodipicolin 96.0 0.1 2.2E-06 51.7 12.6 133 168-314 19-160 (284)
302 TIGR03249 KdgD 5-dehydro-4-deo 96.0 0.14 3E-06 51.3 13.7 133 168-315 24-163 (296)
303 PRK13396 3-deoxy-7-phosphohept 96.0 0.069 1.5E-06 54.9 11.5 107 203-316 191-306 (352)
304 PRK02227 hypothetical protein; 96.0 0.28 6.1E-06 47.7 15.0 159 171-364 9-180 (238)
305 PRK03620 5-dehydro-4-deoxygluc 96.0 0.16 3.5E-06 51.1 13.9 123 168-305 26-154 (303)
306 TIGR01305 GMP_reduct_1 guanosi 95.9 0.054 1.2E-06 55.1 10.3 94 210-316 80-178 (343)
307 PRK00230 orotidine 5'-phosphat 95.9 0.11 2.3E-06 50.3 12.1 82 159-261 4-89 (230)
308 PRK05835 fructose-bisphosphate 95.9 0.46 1E-05 48.1 16.7 148 156-304 40-222 (307)
309 PRK00278 trpC indole-3-glycero 95.9 0.12 2.5E-06 51.0 12.2 128 158-316 50-187 (260)
310 PRK05718 keto-hydroxyglutarate 95.8 0.12 2.6E-06 49.5 11.8 150 157-325 14-191 (212)
311 cd00951 KDGDH 5-dehydro-4-deox 95.8 0.2 4.4E-06 49.9 13.9 124 168-306 19-148 (289)
312 cd04737 LOX_like_FMN L-Lactate 95.8 0.08 1.7E-06 54.5 11.2 42 272-315 207-248 (351)
313 COG2876 AroA 3-deoxy-D-arabino 95.8 0.087 1.9E-06 51.8 10.8 135 154-316 106-249 (286)
314 PF00701 DHDPS: Dihydrodipicol 95.8 0.75 1.6E-05 45.7 17.9 187 113-330 19-218 (289)
315 TIGR02708 L_lactate_ox L-lacta 95.8 0.086 1.9E-06 54.6 11.4 43 272-316 214-256 (367)
316 cd02811 IDI-2_FMN Isopentenyl- 95.8 0.088 1.9E-06 53.6 11.4 109 206-316 93-209 (326)
317 TIGR01306 GMP_reduct_2 guanosi 95.8 0.076 1.6E-06 54.0 10.7 94 209-316 67-165 (321)
318 PLN02979 glycolate oxidase 95.8 0.1 2.2E-06 53.8 11.7 43 272-316 209-251 (366)
319 COG1830 FbaB DhnA-type fructos 95.8 0.19 4.1E-06 49.6 13.0 142 157-324 77-245 (265)
320 cd03323 D-glucarate_dehydratas 95.8 0.21 4.6E-06 52.2 14.4 119 168-314 168-289 (395)
321 cd02922 FCB2_FMN Flavocytochro 95.8 0.12 2.7E-06 53.0 12.3 89 226-316 118-241 (344)
322 PRK09517 multifunctional thiam 95.8 0.032 6.9E-07 63.0 8.7 74 251-326 127-204 (755)
323 cd04740 DHOD_1B_like Dihydroor 95.8 0.12 2.6E-06 51.5 11.9 97 218-315 82-185 (296)
324 PRK05848 nicotinate-nucleotide 95.8 0.082 1.8E-06 52.6 10.6 91 213-324 168-265 (273)
325 PRK08185 hypothetical protein; 95.7 0.37 8E-06 48.3 15.2 76 240-319 150-231 (283)
326 PRK02714 O-succinylbenzoate sy 95.7 0.49 1.1E-05 48.0 16.4 131 158-315 110-246 (320)
327 PRK03170 dihydrodipicolinate s 95.7 0.18 3.9E-06 50.2 13.1 133 168-314 20-161 (292)
328 PRK07114 keto-hydroxyglutarate 95.7 0.49 1.1E-05 45.8 15.3 151 157-324 14-196 (222)
329 TIGR01927 menC_gamma/gm+ o-suc 95.6 0.37 8E-06 48.6 15.0 129 159-315 102-235 (307)
330 PLN02493 probable peroxisomal 95.6 0.12 2.7E-06 53.4 11.5 43 272-316 210-252 (367)
331 PLN02495 oxidoreductase, actin 95.6 0.1 2.3E-06 54.3 11.0 103 217-320 104-218 (385)
332 TIGR00674 dapA dihydrodipicoli 95.6 0.2 4.4E-06 49.8 12.7 126 168-307 17-151 (285)
333 cd04736 MDH_FMN Mandelate dehy 95.5 0.14 3E-06 53.0 11.4 43 272-316 222-264 (361)
334 PRK06015 keto-hydroxyglutarate 95.5 0.71 1.5E-05 44.0 15.4 146 157-320 3-176 (201)
335 PRK13957 indole-3-glycerol-pho 95.4 0.081 1.8E-06 51.9 9.0 76 239-321 61-136 (247)
336 TIGR01928 menC_lowGC/arch o-su 95.4 0.46 1E-05 48.2 14.8 130 157-315 121-252 (324)
337 PRK05458 guanosine 5'-monophos 95.3 0.11 2.3E-06 53.1 10.0 97 209-316 70-168 (326)
338 PRK04147 N-acetylneuraminate l 95.3 0.38 8.2E-06 48.1 13.8 132 168-313 22-163 (293)
339 COG1411 Uncharacterized protei 95.3 0.079 1.7E-06 50.1 8.1 82 236-321 134-215 (229)
340 PRK12858 tagatose 1,6-diphosph 95.3 0.26 5.7E-06 50.6 12.7 136 177-324 114-284 (340)
341 TIGR02313 HpaI-NOT-DapA 2,4-di 95.3 0.35 7.6E-06 48.4 13.3 136 168-317 19-165 (294)
342 cd00954 NAL N-Acetylneuraminic 95.3 0.41 8.9E-06 47.7 13.8 125 168-306 19-154 (288)
343 PRK05096 guanosine 5'-monophos 95.3 0.12 2.6E-06 52.7 9.9 95 210-318 81-181 (346)
344 PRK08610 fructose-bisphosphate 95.3 0.61 1.3E-05 46.8 14.8 110 208-319 115-236 (286)
345 PRK12457 2-dehydro-3-deoxyphos 95.2 0.29 6.2E-06 48.7 12.2 135 155-316 85-237 (281)
346 cd04729 NanE N-acetylmannosami 95.2 0.42 9.1E-06 45.5 13.2 120 168-316 25-150 (219)
347 TIGR00683 nanA N-acetylneurami 95.2 0.4 8.8E-06 47.9 13.5 125 168-306 19-154 (290)
348 PRK07428 nicotinate-nucleotide 95.2 0.17 3.7E-06 50.8 10.7 92 213-325 182-280 (288)
349 PRK08072 nicotinate-nucleotide 95.2 0.17 3.6E-06 50.6 10.6 62 245-320 201-264 (277)
350 cd02810 DHOD_DHPD_FMN Dihydroo 95.2 0.36 7.7E-06 47.8 13.0 177 102-316 9-196 (289)
351 COG4981 Enoyl reductase domain 95.2 0.46 1E-05 51.0 14.1 215 76-324 10-261 (717)
352 cd03317 NAAAR N-acylamino acid 95.1 0.7 1.5E-05 47.2 15.4 129 158-315 126-257 (354)
353 PF04131 NanE: Putative N-acet 95.1 0.15 3.3E-06 47.9 9.5 110 173-314 2-117 (192)
354 TIGR01362 KDO8P_synth 3-deoxy- 95.1 0.23 5E-06 48.8 11.0 132 156-316 72-221 (258)
355 COG0135 TrpF Phosphoribosylant 95.1 1.7 3.7E-05 41.6 16.8 179 112-323 8-190 (208)
356 TIGR00078 nadC nicotinate-nucl 95.1 0.19 4.2E-06 49.8 10.7 83 214-317 165-251 (265)
357 PF01081 Aldolase: KDPG and KH 95.0 0.1 2.3E-06 49.4 8.1 90 227-330 9-98 (196)
358 TIGR01182 eda Entner-Doudoroff 95.0 0.13 2.7E-06 49.1 8.7 90 227-330 9-98 (204)
359 TIGR01858 tag_bisphos_ald clas 95.0 0.77 1.7E-05 45.9 14.6 110 208-319 110-233 (282)
360 PRK02901 O-succinylbenzoate sy 94.9 1.2 2.6E-05 45.5 16.2 132 159-316 80-214 (327)
361 PRK06843 inosine 5-monophospha 94.9 0.3 6.6E-06 51.2 11.9 70 239-316 152-222 (404)
362 PRK06015 keto-hydroxyglutarate 94.9 0.2 4.3E-06 47.7 9.7 90 227-330 5-94 (201)
363 cd08210 RLP_RrRLP Ribulose bis 94.9 0.77 1.7E-05 47.6 14.8 142 155-316 123-284 (364)
364 PF01081 Aldolase: KDPG and KH 94.8 0.23 5E-06 47.1 10.0 130 158-322 8-182 (196)
365 TIGR01302 IMP_dehydrog inosine 94.8 0.087 1.9E-06 56.0 8.0 69 240-316 224-293 (450)
366 PRK05718 keto-hydroxyglutarate 94.8 0.33 7.1E-06 46.6 11.1 99 215-330 7-105 (212)
367 PRK05198 2-dehydro-3-deoxyphos 94.8 0.41 8.9E-06 47.2 11.8 133 155-316 79-229 (264)
368 PRK11197 lldD L-lactate dehydr 94.8 0.31 6.7E-06 50.8 11.6 43 272-316 231-273 (381)
369 TIGR03247 glucar-dehydr glucar 94.7 0.78 1.7E-05 48.7 14.7 121 168-314 180-307 (441)
370 TIGR02320 PEP_mutase phosphoen 94.7 0.25 5.5E-06 49.4 10.4 52 209-260 62-113 (285)
371 PF01070 FMN_dh: FMN-dependent 94.7 0.14 2.9E-06 53.0 8.7 89 226-316 110-253 (356)
372 cd06557 KPHMT-like Ketopantoat 94.6 0.46 1E-05 46.8 11.9 126 176-315 25-177 (254)
373 TIGR01303 IMP_DH_rel_1 IMP deh 94.6 0.1 2.2E-06 56.0 7.8 68 239-317 224-295 (475)
374 PRK12738 kbaY tagatose-bisphos 94.6 1.2 2.6E-05 44.7 14.9 110 208-319 112-235 (286)
375 cd01568 QPRTase_NadC Quinolina 94.6 0.33 7.1E-06 48.2 10.8 89 215-324 169-263 (269)
376 PRK12737 gatY tagatose-bisphos 94.6 1.2 2.6E-05 44.6 14.8 110 208-319 112-235 (284)
377 PLN02363 phosphoribosylanthran 94.5 1 2.2E-05 44.5 14.0 52 272-324 185-236 (256)
378 PRK13958 N-(5'-phosphoribosyl) 94.5 4.6 9.9E-05 38.5 18.2 174 112-319 7-185 (207)
379 PRK09195 gatY tagatose-bisphos 94.4 1.4 3.1E-05 44.1 14.9 111 208-320 112-236 (284)
380 PRK01130 N-acetylmannosamine-6 94.4 0.82 1.8E-05 43.6 12.9 120 168-316 21-146 (221)
381 PRK05742 nicotinate-nucleotide 94.4 0.36 7.8E-06 48.2 10.6 61 245-319 202-264 (277)
382 PLN02334 ribulose-phosphate 3- 94.3 1.5 3.3E-05 42.1 14.7 136 158-316 8-146 (229)
383 KOG2550 IMP dehydrogenase/GMP 94.3 0.61 1.3E-05 48.6 12.3 68 243-318 254-322 (503)
384 COG0800 Eda 2-keto-3-deoxy-6-p 94.3 0.42 9.2E-06 45.7 10.4 69 236-314 22-90 (211)
385 cd00953 KDG_aldolase KDG (2-ke 94.3 1.2 2.6E-05 44.2 14.1 133 167-315 17-157 (279)
386 cd01572 QPRTase Quinolinate ph 94.2 0.17 3.7E-06 50.2 8.0 61 245-319 195-257 (268)
387 TIGR01037 pyrD_sub1_fam dihydr 94.2 1.2 2.6E-05 44.4 14.0 106 210-316 75-189 (300)
388 cd00956 Transaldolase_FSA Tran 94.1 0.55 1.2E-05 44.9 10.8 138 157-330 51-193 (211)
389 KOG4175 Tryptophan synthase al 94.1 0.91 2E-05 43.2 11.8 44 276-321 196-240 (268)
390 PF00701 DHDPS: Dihydrodipicol 94.1 0.49 1.1E-05 47.0 10.9 126 168-307 20-154 (289)
391 TIGR03128 RuMP_HxlA 3-hexulose 94.0 1 2.3E-05 42.1 12.6 129 160-316 2-133 (206)
392 PLN02417 dihydrodipicolinate s 94.0 0.87 1.9E-05 45.2 12.6 123 168-306 20-151 (280)
393 cd00951 KDGDH 5-dehydro-4-deox 94.0 7.2 0.00016 38.9 20.1 189 113-330 18-217 (289)
394 PRK11320 prpB 2-methylisocitra 94.0 0.75 1.6E-05 46.3 12.0 147 177-330 31-198 (292)
395 PRK09140 2-dehydro-3-deoxy-6-p 94.0 0.39 8.4E-06 45.8 9.5 87 227-327 11-98 (206)
396 cd00408 DHDPS-like Dihydrodipi 94.0 5.3 0.00012 39.3 18.0 148 154-330 63-214 (281)
397 PRK06552 keto-hydroxyglutarate 94.0 0.59 1.3E-05 44.8 10.8 90 227-330 14-106 (213)
398 PF03932 CutC: CutC family; I 93.8 0.68 1.5E-05 44.1 10.7 125 167-313 66-196 (201)
399 cd00452 KDPG_aldolase KDPG and 93.8 0.31 6.7E-06 45.5 8.4 89 227-329 5-93 (190)
400 COG2513 PrpB PEP phosphonomuta 93.8 1.3 2.9E-05 44.2 13.0 200 95-319 9-237 (289)
401 PRK12857 fructose-1,6-bisphosp 93.7 2.3 5E-05 42.6 15.0 110 208-319 112-235 (284)
402 PRK00311 panB 3-methyl-2-oxobu 93.7 0.88 1.9E-05 45.1 11.8 126 176-315 28-180 (264)
403 TIGR02317 prpB methylisocitrat 93.7 0.94 2E-05 45.4 12.1 148 177-330 27-193 (285)
404 cd00947 TBP_aldolase_IIB Tagat 93.7 2.5 5.5E-05 42.2 15.1 110 208-319 107-229 (276)
405 PRK07107 inosine 5-monophospha 93.7 0.22 4.7E-06 53.8 8.1 73 239-318 241-314 (502)
406 cd06556 ICL_KPHMT Members of t 93.7 1 2.3E-05 44.0 12.1 151 158-330 12-187 (240)
407 TIGR01521 FruBisAldo_II_B fruc 93.7 1.7 3.6E-05 44.8 14.0 78 241-319 173-278 (347)
408 TIGR00284 dihydropteroate synt 93.7 0.77 1.7E-05 49.5 12.1 48 172-232 168-215 (499)
409 PRK13399 fructose-1,6-bisphosp 93.6 1.6 3.5E-05 44.9 13.8 77 241-318 175-279 (347)
410 PRK07114 keto-hydroxyglutarate 93.6 0.82 1.8E-05 44.2 11.0 90 227-330 16-109 (222)
411 cd04726 KGPDC_HPS 3-Keto-L-gul 93.6 1.6 3.5E-05 40.5 12.9 129 160-316 3-133 (202)
412 PRK13306 ulaD 3-keto-L-gulonat 93.5 1.8 3.8E-05 41.6 13.3 144 156-324 55-199 (216)
413 TIGR02321 Pphn_pyruv_hyd phosp 93.5 3.2 7E-05 41.7 15.5 205 96-319 7-238 (290)
414 PRK07084 fructose-bisphosphate 93.5 2.6 5.7E-05 42.9 14.9 100 209-309 124-240 (321)
415 PRK07535 methyltetrahydrofolat 93.2 1.5 3.2E-05 43.4 12.6 54 167-232 22-76 (261)
416 COG2513 PrpB PEP phosphonomuta 93.1 1.9 4.1E-05 43.1 13.0 145 176-331 31-199 (289)
417 PRK09196 fructose-1,6-bisphosp 93.1 2 4.3E-05 44.2 13.5 79 240-319 174-280 (347)
418 COG5016 Pyruvate/oxaloacetate 93.1 5.3 0.00011 41.9 16.4 132 162-314 87-229 (472)
419 TIGR01740 pyrF orotidine 5'-ph 93.1 1.4 2.9E-05 42.0 11.7 77 168-261 9-85 (213)
420 cd00308 enolase_like Enolase-s 93.1 1 2.2E-05 43.1 10.9 92 214-315 81-174 (229)
421 cd01573 modD_like ModD; Quinol 93.0 0.52 1.1E-05 46.9 9.0 62 245-317 196-259 (272)
422 PF04309 G3P_antiterm: Glycero 93.0 0.092 2E-06 48.9 3.4 72 237-320 102-173 (175)
423 TIGR02319 CPEP_Pphonmut carbox 93.0 1.3 2.8E-05 44.6 11.8 121 209-331 61-198 (294)
424 TIGR03151 enACPred_II putative 92.9 1.1 2.3E-05 45.4 11.3 90 209-315 46-135 (307)
425 PF03932 CutC: CutC family; I 92.9 2.6 5.5E-05 40.2 13.1 134 161-316 2-147 (201)
426 PF00697 PRAI: N-(5'phosphorib 92.9 1.1 2.4E-05 42.1 10.7 175 112-325 5-185 (197)
427 PLN03033 2-dehydro-3-deoxyphos 92.9 0.67 1.4E-05 46.2 9.3 108 156-291 86-194 (290)
428 PRK15440 L-rhamnonate dehydrat 92.7 0.88 1.9E-05 47.6 10.7 116 180-315 170-290 (394)
429 PF01487 DHquinase_I: Type I 3 92.7 0.97 2.1E-05 43.2 10.2 135 161-316 1-150 (224)
430 cd00423 Pterin_binding Pterin 92.6 1.1 2.3E-05 44.0 10.6 78 168-256 22-100 (258)
431 PRK07455 keto-hydroxyglutarate 92.6 0.98 2.1E-05 42.3 9.8 88 216-317 5-92 (187)
432 cd08205 RuBisCO_IV_RLP Ribulos 92.5 3.2 7E-05 43.0 14.3 142 155-316 127-288 (367)
433 PF00809 Pterin_bind: Pterin b 92.4 0.47 1E-05 45.2 7.5 57 173-233 23-80 (210)
434 PRK08318 dihydropyrimidine deh 92.2 1.4 3.1E-05 46.2 11.6 98 218-315 91-199 (420)
435 TIGR01502 B_methylAsp_ase meth 92.2 5.1 0.00011 42.2 15.5 146 155-315 162-326 (408)
436 PF00793 DAHP_synth_1: DAHP sy 92.2 0.92 2E-05 45.1 9.5 110 202-317 113-235 (270)
437 cd00405 PRAI Phosphoribosylant 92.1 2.4 5.3E-05 39.8 12.0 123 162-315 1-126 (203)
438 cd04730 NPD_like 2-Nitropropan 92.1 2.2 4.8E-05 40.7 11.9 92 209-315 37-128 (236)
439 PRK01222 N-(5'-phosphoribosyl) 92.1 3.2 7E-05 39.6 12.8 127 161-317 4-132 (210)
440 PRK05105 O-succinylbenzoate sy 92.0 5.1 0.00011 40.6 14.9 120 164-313 111-234 (322)
441 PRK14042 pyruvate carboxylase 91.9 24 0.00051 39.2 20.9 129 110-259 87-229 (596)
442 PRK03170 dihydrodipicolinate s 91.8 13 0.00028 37.0 17.4 195 106-330 9-218 (292)
443 PF02548 Pantoate_transf: Keto 91.8 2 4.4E-05 42.5 11.2 179 96-322 10-222 (261)
444 TIGR02321 Pphn_pyruv_hyd phosp 91.7 2.1 4.5E-05 43.0 11.5 150 176-331 28-200 (290)
445 PRK13803 bifunctional phosphor 91.7 8.5 0.00019 42.7 17.3 49 272-323 147-197 (610)
446 TIGR02313 HpaI-NOT-DapA 2,4-di 91.7 0.68 1.5E-05 46.4 8.0 87 237-324 19-110 (294)
447 PRK04452 acetyl-CoA decarbonyl 91.7 1.7 3.7E-05 44.2 10.9 113 180-310 87-201 (319)
448 TIGR03569 NeuB_NnaB N-acetylne 91.6 2.5 5.5E-05 43.2 12.2 108 190-311 108-218 (329)
449 KOG0538 Glycolate oxidase [Ene 91.6 0.58 1.3E-05 47.1 7.2 43 272-316 209-251 (363)
450 PRK05286 dihydroorotate dehydr 91.5 2.7 5.9E-05 43.1 12.4 106 213-319 124-248 (344)
451 KOG4201 Anthranilate synthase 91.5 0.75 1.6E-05 44.1 7.5 73 246-324 200-274 (289)
452 cd08207 RLP_NonPhot Ribulose b 91.5 3.7 8E-05 43.2 13.4 140 155-317 140-302 (406)
453 COG0413 PanB Ketopantoate hydr 91.4 2.3 5.1E-05 41.9 11.0 162 95-293 8-203 (268)
454 PRK07807 inosine 5-monophospha 91.4 0.63 1.4E-05 50.0 7.9 69 240-316 227-296 (479)
455 PLN02424 ketopantoate hydroxym 91.4 3.9 8.5E-05 41.8 13.0 117 156-290 33-155 (332)
456 TIGR00674 dapA dihydrodipicoli 91.4 16 0.00035 36.2 18.7 193 106-329 6-214 (285)
457 cd02940 DHPD_FMN Dihydropyrimi 91.4 2.2 4.8E-05 42.8 11.4 99 218-316 91-200 (299)
458 cd08210 RLP_RrRLP Ribulose bis 91.3 13 0.00028 38.6 17.1 199 96-324 117-351 (364)
459 cd00950 DHDPS Dihydrodipicolin 91.2 16 0.00035 36.0 18.4 192 106-329 8-216 (284)
460 PRK11572 copper homeostasis pr 91.2 4 8.7E-05 40.1 12.5 131 162-314 4-146 (248)
461 COG1954 GlpP Glycerol-3-phosph 91.1 0.98 2.1E-05 41.8 7.7 62 242-315 111-172 (181)
462 COG1891 Uncharacterized protei 91.1 5.6 0.00012 37.2 12.6 158 172-365 10-181 (235)
463 TIGR03586 PseI pseudaminic aci 91.1 3.3 7.2E-05 42.3 12.4 83 203-293 117-200 (327)
464 TIGR03326 rubisco_III ribulose 91.1 5.7 0.00012 41.9 14.4 141 155-318 141-307 (412)
465 PF01116 F_bP_aldolase: Fructo 90.9 1.4 3E-05 44.2 9.3 80 240-320 156-239 (287)
466 cd04743 NPD_PKS 2-Nitropropane 90.7 2.7 5.9E-05 42.8 11.3 90 209-314 38-128 (320)
467 cd00739 DHPS DHPS subgroup of 90.6 2 4.4E-05 42.3 10.1 75 168-256 22-100 (257)
468 PRK08091 ribulose-phosphate 3- 90.6 8.3 0.00018 37.5 14.0 134 157-325 12-153 (228)
469 PRK05265 pyridoxine 5'-phospha 90.5 4.3 9.2E-05 39.6 11.9 109 203-322 105-219 (239)
470 PF13714 PEP_mutase: Phosphoen 90.4 2.8 6.1E-05 40.9 10.8 82 176-261 22-107 (238)
471 PRK08385 nicotinate-nucleotide 90.4 1.5 3.1E-05 43.9 8.9 90 213-320 169-263 (278)
472 COG0329 DapA Dihydrodipicolina 90.3 1.1 2.3E-05 45.2 8.0 88 236-324 22-114 (299)
473 cd08209 RLP_DK-MTP-1-P-enolase 90.2 5.7 0.00012 41.6 13.4 142 155-318 121-287 (391)
474 PRK15452 putative protease; Pr 90.2 10 0.00022 40.4 15.6 129 166-319 10-144 (443)
475 cd08213 RuBisCO_large_III Ribu 90.1 5.8 0.00012 41.9 13.4 141 155-318 128-294 (412)
476 cd00003 PNPsynthase Pyridoxine 90.0 5.7 0.00012 38.6 12.3 110 203-322 102-217 (234)
477 PLN02417 dihydrodipicolinate s 89.9 1.3 2.7E-05 44.1 8.1 88 236-324 19-111 (280)
478 PRK13397 3-deoxy-7-phosphohept 89.7 1.1 2.5E-05 44.0 7.3 90 237-330 27-119 (250)
479 KOG3111 D-ribulose-5-phosphate 89.5 3.2 6.9E-05 39.3 9.7 43 278-322 160-203 (224)
480 TIGR03249 KdgD 5-dehydro-4-deo 89.5 24 0.00052 35.2 20.5 196 105-330 12-222 (296)
481 cd04722 TIM_phosphate_binding 89.5 1.4 3E-05 39.6 7.4 80 239-320 12-95 (200)
482 PRK09549 mtnW 2,3-diketo-5-met 89.3 8.2 0.00018 40.7 13.8 141 155-317 131-296 (407)
483 TIGR00559 pdxJ pyridoxine 5'-p 89.3 6.2 0.00013 38.5 11.9 112 203-322 102-218 (237)
484 TIGR00222 panB 3-methyl-2-oxob 89.3 5.2 0.00011 39.7 11.7 141 156-315 13-179 (263)
485 PRK04147 N-acetylneuraminate l 89.0 1.7 3.6E-05 43.4 8.2 87 237-324 22-114 (293)
486 cd00952 CHBPH_aldolase Trans-o 89.0 1.5 3.3E-05 44.2 7.9 87 237-324 27-118 (309)
487 TIGR01036 pyrD_sub2 dihydrooro 89.0 5 0.00011 41.1 11.7 159 158-319 57-247 (335)
488 PRK03620 5-dehydro-4-deoxygluc 88.9 27 0.00059 35.0 19.1 195 106-330 15-224 (303)
489 PRK11613 folP dihydropteroate 88.8 1.7 3.8E-05 43.5 8.0 75 168-256 36-114 (282)
490 COG0800 Eda 2-keto-3-deoxy-6-p 88.8 4.9 0.00011 38.5 10.7 119 157-314 12-131 (211)
491 PF01729 QRPTase_C: Quinolinat 88.7 2.1 4.5E-05 39.6 8.0 94 213-324 66-163 (169)
492 cd08205 RuBisCO_IV_RLP Ribulos 88.7 27 0.00058 36.3 17.0 201 96-324 121-355 (367)
493 cd00311 TIM Triosephosphate is 88.7 0.44 9.5E-06 46.6 3.7 41 286-328 199-239 (242)
494 PRK15129 L-Ala-D/L-Glu epimera 88.7 20 0.00043 36.3 15.8 126 158-315 119-246 (321)
495 TIGR00259 thylakoid_BtpA membr 88.6 23 0.00051 35.0 15.7 135 166-316 20-178 (257)
496 PRK02412 aroD 3-dehydroquinate 88.6 19 0.00041 35.3 15.1 90 159-259 17-116 (253)
497 PRK14567 triosephosphate isome 88.6 0.64 1.4E-05 45.8 4.7 42 286-329 202-243 (253)
498 PRK09282 pyruvate carboxylase 88.4 23 0.00049 39.3 17.1 236 165-426 90-343 (592)
499 COG0159 TrpA Tryptophan syntha 88.4 2.3 5E-05 42.2 8.5 104 213-316 4-129 (265)
500 cd00502 DHQase_I Type I 3-dehy 88.1 24 0.00053 33.6 15.3 134 160-316 2-150 (225)
No 1
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-68 Score=524.78 Aligned_cols=311 Identities=52% Similarity=0.814 Sum_probs=283.6
Q ss_pred HHHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHH
Q 013813 94 WAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILL 173 (436)
Q Consensus 94 ~~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~ 173 (436)
+-||++.+.+.-++|||+++|+++||+|||+||++++|||||.++.|.++++++...|++++.|+|||||++|+||+.+.
T Consensus 10 ~~f~~~~~~~~ri~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll 89 (358)
T KOG2335|consen 10 AIFWSKQGRPKRIVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLL 89 (358)
T ss_pred HhhhhhcCCcccccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHH
Confidence 56999999887799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
+||++++++||+||||||||++.+++|+||++||.+|+++.++|++++..++.||+||||++.+.++++++|++++++|+
T Consensus 90 ~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~ 169 (358)
T KOG2335|consen 90 KAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGV 169 (358)
T ss_pred HHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh--hh
Q 013813 254 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG--FR 330 (436)
Q Consensus 254 d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~--i~ 330 (436)
+.|+|||||+.++....+++||+.|+.|++.+. +|||+||||.+.+|+.++++.||+||||+|||+|.|||+|.. ..
T Consensus 170 ~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~~~~~ 249 (358)
T KOG2335|consen 170 SLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLTAGYG 249 (358)
T ss_pred cEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhccCCCC
Confidence 999999999998876678999999999999987 999999999999999999999999999999999999999954 22
Q ss_pred hhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhhhcCCHHHHHHHHhcc-hhcHHHHHH-H
Q 013813 331 TAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVP--WRMIRSHVHKLLGEWFRIQPGVREDLNAQN-RLTFEFLYN-L 406 (436)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~--~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~-~~~~~~~~~-~ 406 (436)
. ...+++.+|++++.+++.. +..+|.|+++|++.++..++.+|..++..+ ..++.++.. +
T Consensus 250 ~----------------~~~~~~~~~l~~~~e~~g~~~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~ 313 (358)
T KOG2335|consen 250 P----------------TPWGCVEEYLDIAREFGGLSSFSLIRHHLFKMLRPLLSIHQDLRRDLAALNSCESVIDFLEEL 313 (358)
T ss_pred C----------------CHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhHHHHHHHH
Confidence 1 1246899999999988744 899999999999999999999999998776 234555554 5
Q ss_pred HHHHHHhcCCCCCC
Q 013813 407 VDRLRELGVRIPLY 420 (436)
Q Consensus 407 l~~~~~~~~~~~~~ 420 (436)
+..+++.+.+.|-.
T Consensus 314 ~~~v~~~~~d~~~~ 327 (358)
T KOG2335|consen 314 VLMVRKRVEDGFGR 327 (358)
T ss_pred HHHHHhhhcccccc
Confidence 55666777665544
No 2
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-64 Score=505.70 Aligned_cols=305 Identities=33% Similarity=0.507 Sum_probs=272.7
Q ss_pred HhCCCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHH
Q 013813 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAAR 177 (436)
Q Consensus 99 ~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~ 177 (436)
...+++++||||+|+||.+||++|+++|+ +++|||||+++.+.+..+.....+...+.+.|++|||+|++|+.+++||+
T Consensus 7 ~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~eaA~ 86 (323)
T COG0042 7 IELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEAAK 86 (323)
T ss_pred ccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHHHHH
Confidence 34578999999999999999999999999 99999999999988776655555555577999999999999999999999
Q ss_pred HHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCCChhh--HHHHHHHHHHcCc
Q 013813 178 RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQD--TIKYAKMLEDAGC 253 (436)
Q Consensus 178 ~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~~d--~~~~ak~le~aG~ 253 (436)
++++ |+|+||||||||++++.++++||+||++|+++.+||++++++++ +|||||||+|++..+ ..++++.++++|+
T Consensus 87 ~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~ 166 (323)
T COG0042 87 IAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGA 166 (323)
T ss_pred HHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCC
Confidence 8866 78999999999999999999999999999999999999999995 999999999998776 7889999999999
Q ss_pred cEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 254 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 254 d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
+.|+|||||+.+. +.+++||+.|+++++.++ +|||+||||.|++|++++|+.+||||||||||++.|||+|.++
T Consensus 167 ~~ltVHgRtr~~~--y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i--- 241 (323)
T COG0042 167 DALTVHGRTRAQG--YLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI--- 241 (323)
T ss_pred CEEEEecccHHhc--CCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH---
Confidence 9999999999975 445799999999999998 9999999999999999999999999999999999999999988
Q ss_pred hhccCCcccCCCCHHHHHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHHH
Q 013813 333 EWIVGSEEISKDGNLDQADLLVEYLKLCEKYP--VPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRL 410 (436)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~--~~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~~ 410 (436)
++..+++... ++..+..+++.+|++...++. ..+..+|+|+.||+.. +.+...+|+.+++.. ++.++..+++.+
T Consensus 242 ~~~~~g~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~h~~~~~~~-~~~a~~~r~~~~~~~--~~~~~~~~l~~~ 317 (323)
T COG0042 242 DYLETGELLP-PTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKG-LPGARELRRALNKAE--DGAEVRRALEAV 317 (323)
T ss_pred HHhhcCCCCC-CCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CccHHHHHHHHhccC--cHHHHHHHHHHH
Confidence 5555666543 778899999999999766554 5688999999998886 578889999988886 788888888776
Q ss_pred HH
Q 013813 411 RE 412 (436)
Q Consensus 411 ~~ 412 (436)
..
T Consensus 318 ~~ 319 (323)
T COG0042 318 FE 319 (323)
T ss_pred Hh
Confidence 54
No 3
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=5.1e-61 Score=480.53 Aligned_cols=294 Identities=23% Similarity=0.328 Sum_probs=254.2
Q ss_pred cEEEccCCCCCcHHHHHHHHHhC-CCeEEeCcccchhhccChhhh---hhhhh---ccCCCCCEEEEecCCCHHHHHHHH
Q 013813 104 KLIVAPMVDNSELPFRMLCRRYG-AEAAYTPMLHSRIFTESEKYR---NEEFA---TCKEDRPLFVQFCANDPEILLNAA 176 (436)
Q Consensus 104 ~i~lAPM~gvtd~~fR~l~~~~G-a~l~~Temisa~~l~~~~~~~---~~~~~---~~~~e~plivQL~g~d~e~~~~AA 176 (436)
+++||||+|+||.+||++|+++| ++++|||||+++.+..+.+.. ...+. ..+.++|+++||+|++|+.|++||
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 68999999999999999999999 799999999987665543322 11222 456789999999999999999999
Q ss_pred HHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCCh-hhHHHHHHHHHHcC
Q 013813 177 RRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL-QDTIKYAKMLEDAG 252 (436)
Q Consensus 177 ~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~-~d~~~~ak~le~aG 252 (436)
+.+++ |+|+||||||||++.+.+.++|++|+++|+++.+|++++++.+ ++||+||+|+|++. ++..++++.++++|
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~G 161 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAG 161 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcC
Confidence 87764 8999999999999988888899999999999999999999988 49999999999753 46789999999999
Q ss_pred ccEEEeccCcccccCCCCCc-cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 253 CSLLAVHGRTRDEKDGKKFR-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 253 ~d~I~VHgRt~~~~~~~~g~-ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
++.|+||+||..+ +++++ ++|+.++++++.+++|||+||||.|++|++++++.+|||+||||||+++|||||++++.
T Consensus 162 vd~i~Vh~Rt~~~--~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~ 239 (312)
T PRK10550 162 ATELVVHGRTKED--GYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKY 239 (312)
T ss_pred CCEEEECCCCCcc--CCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhc
Confidence 9999999999875 45566 49999999999999999999999999999999999999999999999999999998864
Q ss_pred hhhccCCcccCCCCHHHHHHHHHHHHHHHHhCC-C--hhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHH
Q 013813 332 AEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP-V--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVD 408 (436)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~--~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~ 408 (436)
++ ..++..++++++.+|+++..++. . .+..||+|+.||+.. +++..++|+.+++++ +.+++.++++
T Consensus 240 ------g~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~i~~~~--~~~e~~~~~~ 308 (312)
T PRK10550 240 ------NE--PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLGYLRKE-YDEATELFQEIRALN--NSPDIARAIQ 308 (312)
T ss_pred ------CC--CCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhc-CCcHHHHHHHHHcCC--CHHHHHHHHH
Confidence 22 23567788889999998755443 2 266799999998885 688889999999997 8899998887
Q ss_pred HH
Q 013813 409 RL 410 (436)
Q Consensus 409 ~~ 410 (436)
++
T Consensus 309 ~~ 310 (312)
T PRK10550 309 AI 310 (312)
T ss_pred hh
Confidence 64
No 4
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=5.5e-61 Score=482.57 Aligned_cols=303 Identities=28% Similarity=0.400 Sum_probs=263.9
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhcc-ChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTE-SEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~-~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
+++++||||+|+||++||.+|+++|++++||||++++.+.. +.+.... +...+++.|+++||+|++|+++++||+.++
T Consensus 9 ~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~-~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~ 87 (321)
T PRK10415 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLR-MVHIDEPGIRTVQIAGSDPKEMADAARINV 87 (321)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHH-hccCccCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999986543 3333322 334466789999999999999999998765
Q ss_pred -CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChh--hHHHHHHHHHHcCccEEE
Q 013813 181 -PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ--DTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 181 -~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~--d~~~~ak~le~aG~d~I~ 257 (436)
.|+|+||||||||++.+.+.++|++|+++|+++.+|++++++.+++||+||+|.|++.+ +..++++.++++|+++|+
T Consensus 88 ~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~ 167 (321)
T PRK10415 88 ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALT 167 (321)
T ss_pred HCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEE
Confidence 58999999999999988888899999999999999999999999999999999998643 678999999999999999
Q ss_pred eccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhhhccC
Q 013813 258 VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 337 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~~~~~ 337 (436)
||+|++.+. +.|.++|+.++++++.+++|||+||||.|++|++++++.+|||+||||||++.|||+|.+++. ++..
T Consensus 168 vh~rt~~~~--~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~--~~~~ 243 (321)
T PRK10415 168 IHGRTRACL--FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH--YLDT 243 (321)
T ss_pred EecCccccc--cCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHH--HHhC
Confidence 999998764 455789999999999999999999999999999999998999999999999999999999863 4444
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHh-CCC--hhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHHHHH
Q 013813 338 SEEISKDGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 412 (436)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~yl~~~~~-~~~--~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~~~~ 412 (436)
|+....++..++.+++.+|++.+.+ |+. .+..+|||+.||+.+ +++..++|+.+++++ +++++.++++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~ 318 (321)
T PRK10415 244 GELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAPNDQFRRTFNAIE--DASEQLEALEAYFE 318 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhc-CCchHHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 5554456778889999999986544 443 367899999998885 688899999999998 99999999998763
No 5
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=2.5e-62 Score=490.04 Aligned_cols=298 Identities=36% Similarity=0.570 Sum_probs=228.7
Q ss_pred EEccCCCCCcHHHHHHHHHhCCC-eEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CC
Q 013813 106 IVAPMVDNSELPFRMLCRRYGAE-AAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP-YC 183 (436)
Q Consensus 106 ~lAPM~gvtd~~fR~l~~~~Ga~-l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~ 183 (436)
+||||+|+||.+||.+|+++|++ ++|||||+++.+....+.....+...+.++|+++||+|+||+.+++||+++++ |+
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 58999999999999999999997 99999999998887766666667888888999999999999999999999988 89
Q ss_pred cEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC--hhhHHHHHHHHHHcCccEEEeccC
Q 013813 184 DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 184 D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgR 261 (436)
|+||||||||++.+.++++|++||++|+++.+||+++++.+++||+||||+|++ .+++.++++.++++|+++|+||+|
T Consensus 81 ~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS
T ss_pred cEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecC
Confidence 999999999999999999999999999999999999999999999999999987 678999999999999999999999
Q ss_pred cccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhhhccCCccc
Q 013813 262 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEI 341 (436)
Q Consensus 262 t~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~~~~~~~~~ 341 (436)
|..+. +.+++||+.++++++.+++|||+||||+|++|+.++++.|||||||||||++.|||+|.+.....+ +...
T Consensus 161 t~~q~--~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~---~~~~ 235 (309)
T PF01207_consen 161 TRKQR--YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKE---GEPE 235 (309)
T ss_dssp -TTCC--CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHH---HTT-
T ss_pred chhhc--CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhcc---CCCC
Confidence 99875 445999999999999999999999999999999999999999999999999999999995322222 1222
Q ss_pred CCCCHHHHHHHHHHHHHHHHh-C--CChhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHH-HHH
Q 013813 342 SKDGNLDQADLLVEYLKLCEK-Y--PVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVD-RLR 411 (436)
Q Consensus 342 ~~~~~~~~~~~~~~yl~~~~~-~--~~~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~-~~~ 411 (436)
..++..++.+++.+|+++..+ + ...+..+|+|+.||+.. +.+...+|+.++++. +.+++.+.|+ ++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~-~~~~~~~r~~l~~~~--~~~e~~~~l~~~~~ 306 (309)
T PF01207_consen 236 PFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYFKG-FPGARKFRRELNKCK--TLEEFLELLEEAFL 306 (309)
T ss_dssp -S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCTTT-STTHHHHHHHHCCH---SHHHHHHHH-----
T ss_pred CCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcc-CCcHHHHHHHHHhhC--CHHHHhhhhccccc
Confidence 223356788899999986544 3 23477889998887775 667778999999987 8899988888 444
No 6
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1.9e-60 Score=477.42 Aligned_cols=300 Identities=21% Similarity=0.336 Sum_probs=252.2
Q ss_pred CcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 103 PKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 103 ~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
++++||||+|+||++||.+|+++|+ +++||||++++.+..+.+. ..+..++.++|+++||+|++|+.+++||+.+++
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~ 78 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAEK 78 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998 8999999999988765444 246777899999999999999999999998865
Q ss_pred -CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh----hhHHHHHHHHHHcCccEE
Q 013813 182 -YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL----QDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 182 -g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~----~d~~~~ak~le~aG~d~I 256 (436)
|+|+||||||||++++.+++||++|+++|+++.+|++++++++++||+||+|+|++. +++.++++.++++|++.|
T Consensus 79 ~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~i 158 (318)
T TIGR00742 79 RGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNF 158 (318)
T ss_pred CCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEE
Confidence 899999999999999999999999999999999999999999999999999998753 467889999999999999
Q ss_pred EeccCcc-cccCC-----CCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 257 AVHGRTR-DEKDG-----KKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 257 ~VHgRt~-~~~~~-----~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
+|||||+ .+.+. ..++++|+.++++++.+ ++|||+||||.|++|+.+++. |||+||||||++.|||+|.++
T Consensus 159 tvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~ 236 (318)
T TIGR00742 159 IVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANV 236 (318)
T ss_pred EEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHH
Confidence 9999997 22211 12245999999999987 899999999999999999995 899999999999999999998
Q ss_pred hhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHH
Q 013813 330 RTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDR 409 (436)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~ 409 (436)
+.. +.++ ....++..++.+.+++|++....+...+..+|||+.||+.+ +++..++|+.+++..... ....++||.
T Consensus 237 ~~~--l~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~g-~~~~~~~r~~~~~~~~~~-~~~~~~~~~ 311 (318)
T TIGR00742 237 DRE--IFNE-TDEILTRKEIVEQMLPYIEEYLSQGLSLNHITRHLLGLFQG-KPGAKQWRRYLSENAPKA-GAGIEVLET 311 (318)
T ss_pred HHH--hcCC-CCCCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHcc-CCCHHHHHHHHHhcccCC-CCcHHHHHH
Confidence 753 3333 22345667778888888875544455688999999998885 688889999998864221 134455555
Q ss_pred HH
Q 013813 410 LR 411 (436)
Q Consensus 410 ~~ 411 (436)
..
T Consensus 312 ~~ 313 (318)
T TIGR00742 312 AL 313 (318)
T ss_pred HH
Confidence 43
No 7
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=5e-57 Score=453.55 Aligned_cols=304 Identities=29% Similarity=0.508 Sum_probs=264.9
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
++|+++|||+|+||.+||.+|+++|++++|||||+++.+....+.....+..++.++|+++||+|++++++++||+.+++
T Consensus 7 ~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~ 86 (319)
T TIGR00737 7 KSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAKINEE 86 (319)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999998766554444556677889999999999999999999998865
Q ss_pred -CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh--hhHHHHHHHHHHcCccEEEe
Q 013813 182 -YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 182 -g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~--~d~~~~ak~le~aG~d~I~V 258 (436)
|+|+||||+|||+..+.+.++|+.++++|+++.+|++++++.+++||+||+|+|++. .+..++++.++++|+++|+|
T Consensus 87 ~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~v 166 (319)
T TIGR00737 87 LGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL 166 (319)
T ss_pred CCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEE
Confidence 899999999999877777777888999999999999999999999999999998753 35689999999999999999
Q ss_pred ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhhhccCC
Q 013813 259 HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS 338 (436)
Q Consensus 259 HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~~~~~~ 338 (436)
|+|+..+ +++++++|+.++++++.+++||++||||.|++|+.++++.+|||+||+|||++.|||+|.+++. ++..+
T Consensus 167 h~r~~~~--~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~--~~~~~ 242 (319)
T TIGR00737 167 HGRTRAQ--GYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQ--YLTTG 242 (319)
T ss_pred Ecccccc--cCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHH--HHhCC
Confidence 9998764 4556789999999999999999999999999999999988899999999999999999999863 34334
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHh-CCC--hhHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHHHHHH
Q 013813 339 EEISKDGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 412 (436)
Q Consensus 339 ~~~~~~~~~~~~~~~~~yl~~~~~-~~~--~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~~~~~ 412 (436)
.....++..++++++.+|++++.+ |+. .+..+|+|+.+|+.. +++...+|+.+++++ +++++.++++++.+
T Consensus 243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 243 KYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLKG-FPGNAALRQTLNHAS--SFQEVKQLLDDFFE 316 (319)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhc-CCcHHHHHHHHHcCC--CHHHHHHHHHHHHh
Confidence 433345677888999999987544 543 378899999998864 688899999999998 89999999988754
No 8
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=3.9e-57 Score=456.77 Aligned_cols=290 Identities=22% Similarity=0.354 Sum_probs=248.3
Q ss_pred HhCCCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHH
Q 013813 99 KLGRPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAAR 177 (436)
Q Consensus 99 ~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~ 177 (436)
+.++++++||||+|+||++||.+|+++|+ +++||||++++.+..+. ....+..++.++|+++||+|++|+.+++||+
T Consensus 7 ~~~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~ 84 (333)
T PRK11815 7 KLPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAEAAK 84 (333)
T ss_pred cCCCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHHHHH
Confidence 35678999999999999999999999997 89999999999887654 2334566788999999999999999999999
Q ss_pred HHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC----hhhHHHHHHHHHHcC
Q 013813 178 RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN----LQDTIKYAKMLEDAG 252 (436)
Q Consensus 178 ~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~----~~d~~~~ak~le~aG 252 (436)
++++ |+|+||||||||++++++++||++|+++|+++.+|++++++++++||+||+|++++ .++..++++.++++|
T Consensus 85 ~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG 164 (333)
T PRK11815 85 LAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAG 164 (333)
T ss_pred HHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhC
Confidence 8865 89999999999999999999999999999999999999999999999999999864 246789999999999
Q ss_pred ccEEEeccCccc-ccCC-----CCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 253 CSLLAVHGRTRD-EKDG-----KKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 253 ~d~I~VHgRt~~-~~~~-----~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+++|+||+|+.. +.+. ...+++|+.++++++.+ ++|||+||||.|++|+.++++ +||+||||||++.|||+
T Consensus 165 ~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~ 242 (333)
T PRK11815 165 CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYL 242 (333)
T ss_pred CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHH
Confidence 999999999862 2111 11357999999999985 899999999999999999997 69999999999999999
Q ss_pred chhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhcCCHHHHHHHHhcc
Q 013813 326 FAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN 396 (436)
Q Consensus 326 f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~ 396 (436)
|.+++...+ ++....++..++++.+.+|++....++..+..+|||+.||+++ +++..++|+.+++..
T Consensus 243 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~~~~~~ 309 (333)
T PRK11815 243 LAEVDRELF---GEPAPPLSRSEVLEAMLPYIERHLAQGGRLNHITRHMLGLFQG-LPGARAWRRYLSENA 309 (333)
T ss_pred HHHHHHHhc---CCCCCCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHcC-CCCHHHHHHHHHhhc
Confidence 999875433 3322235667777888888875544565688999999998885 688899999998774
No 9
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=1.9e-48 Score=372.27 Aligned_cols=226 Identities=42% Similarity=0.727 Sum_probs=208.0
Q ss_pred cEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-C
Q 013813 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP-Y 182 (436)
Q Consensus 104 ~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g 182 (436)
++++|||+++||++||++|+++|++++||||++++.+....+.....+..++.+.|+++||+|+++++|+++|+.+++ |
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG 80 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELG 80 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999998876655545556677889999999999999999999988866 9
Q ss_pred CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChh-hHHHHHHHHHHcCccEEEeccC
Q 013813 183 CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 183 ~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~-d~~~~ak~le~aG~d~I~VHgR 261 (436)
+|+||||+|||+.++++++||+.++++++++.++++++++.+++||+||+|.+++.+ ++.++++.+++.|+++|+||+|
T Consensus 81 ~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 81 ADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred CCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCC
Confidence 999999999999999999999999999999999999999999999999999998765 8899999999999999999999
Q ss_pred cccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 262 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 262 t~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
+..+. +.++.+|+.++++++.+++||++||||.+++|+.++++.+|||+||+||+++.||++|++++.
T Consensus 161 ~~~~~--~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~ 228 (231)
T cd02801 161 TREQR--YSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKE 228 (231)
T ss_pred CHHHc--CCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhh
Confidence 87652 334679999999999999999999999999999999998899999999999999999998764
No 10
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=4.9e-48 Score=390.73 Aligned_cols=308 Identities=21% Similarity=0.383 Sum_probs=255.8
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
+.+++|||+..|+++|||+||+.+|||++|.||..+-.|..........++.+..+.-+.|||+|+.|+.+.+||+++.+
T Consensus 264 r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~kaaq~i~e 343 (614)
T KOG2333|consen 264 RDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAKAAQVIAE 343 (614)
T ss_pred ccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHHHHHHHHh
Confidence 46899999999999999999999999999999998877765544444556777788889999999999999999998855
Q ss_pred --CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCCCh--hhHHHHHHHHH-HcCccE
Q 013813 182 --YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNL--QDTIKYAKMLE-DAGCSL 255 (436)
Q Consensus 182 --g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~--~d~~~~ak~le-~aG~d~ 255 (436)
-+|+||||||||...+.+.|.|++||++|..+.++|+++...++ +|++||||.|... .-+.+++..+. +-|+++
T Consensus 344 ~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~sa 423 (614)
T KOG2333|consen 344 TCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASA 423 (614)
T ss_pred hcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcce
Confidence 47999999999999888878899999999999999999987774 6999999998543 23456666665 899999
Q ss_pred EEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcC-cceeeeehHHhhCCccchhhhhh
Q 013813 256 LAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETG-CEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 256 I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tG-aDgVmIGRgal~nP~lf~~i~~~ 332 (436)
||+|||.++|+|.. .+||++|.++.+.+ .+|+|+||+|.|++|..+.+..++ +|+||||||+|-.||||.+|+..
T Consensus 424 vTlHGRSRqQRYTK--~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeq 501 (614)
T KOG2333|consen 424 VTLHGRSRQQRYTK--SANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQ 501 (614)
T ss_pred EEecCchhhhhhhc--ccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhh
Confidence 99999999987665 89999999999876 389999999999999888887765 99999999999999999999875
Q ss_pred hhccCCcccCCCCHHHHHHHHHHHHHHHHhC-CCh---hHHHHHHHHHHHHhhhcCCHHHHHHHHhcchhcHHHHHHHHH
Q 013813 333 EWIVGSEEISKDGNLDQADLLVEYLKLCEKY-PVP---WRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVD 408 (436)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~-~~~---~~~~R~hl~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~l~ 408 (436)
.+.. .+..+|+++++.|.+|..+| |.. +...|+++..++.++.+..| ..+++
T Consensus 502 q~wD-------~sSteRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lSF~~RYiP-----------------v~l~e 557 (614)
T KOG2333|consen 502 QHWD-------ISSTERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLSFFHRYIP-----------------VGLLE 557 (614)
T ss_pred hcCC-------ccchHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHHHHHHhhch-----------------HHHhh
Confidence 4322 45678999999999987554 422 56778887665554333222 23455
Q ss_pred HH-HHhcCCCCCCCCCcchhhhhhhccC
Q 013813 409 RL-RELGVRIPLYKKDADDAEILADDLA 435 (436)
Q Consensus 409 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (436)
.+ .+++.|+|+|.+++++|||++|.-|
T Consensus 558 ~lpqriN~RPp~y~gRdelETLm~S~ka 585 (614)
T KOG2333|consen 558 VLPQRINDRPPLYTGRDELETLMSSQKA 585 (614)
T ss_pred cCchhhccCCccccchhHHHHHHhcccc
Confidence 55 4889999999999999999998654
No 11
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=2.5e-42 Score=332.80 Aligned_cols=211 Identities=21% Similarity=0.246 Sum_probs=178.3
Q ss_pred cEEEccCCCCCcHHHHH-HHHHhCCCeE--------------------EeCcccchhhccChhhhhhhhhccCCCCCEEE
Q 013813 104 KLIVAPMVDNSELPFRM-LCRRYGAEAA--------------------YTPMLHSRIFTESEKYRNEEFATCKEDRPLFV 162 (436)
Q Consensus 104 ~i~lAPM~gvtd~~fR~-l~~~~Ga~l~--------------------~Temisa~~l~~~~~~~~~~~~~~~~e~pliv 162 (436)
|++||||+|+||.+||. +|..+|+..+ ++||+++..+....+... .++ ..+.|+++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~-~~~--~~~~p~~v 77 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIK-ALK--DSNVLVGV 77 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHH-Hhh--ccCCeEEE
Confidence 68999999999999999 7777877554 566665553221111111 122 34679999
Q ss_pred EecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHH
Q 013813 163 QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 163 QL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~ 242 (436)
||+|++++.+.++|+.++.++|+||||||||+..+.+.++|++|+++|+++.++++++++ .++||+||+|++++ .+..
T Consensus 78 qi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~-~~~~ 155 (233)
T cd02911 78 NVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD-VDDE 155 (233)
T ss_pred EecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-cCHH
Confidence 999999999999999998888999999999999888888999999999999999999997 59999999999988 8889
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++++.++++|+|.|+++.+.. + ..+||+.|++++ +++|||+||||.|++|+.++++ +|||+|||||+ .|
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~----g--~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~-~GaD~VmiGR~--~~ 224 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDP----G--NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS-YGADMVSVARA--SL 224 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCC----C--CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHH-cCCCEEEEcCC--CC
Confidence 999999999999876654422 1 268999999987 7899999999999999999998 59999999999 99
Q ss_pred Cccchhhh
Q 013813 323 PALFAGFR 330 (436)
Q Consensus 323 P~lf~~i~ 330 (436)
||+|++++
T Consensus 225 p~~~~~~~ 232 (233)
T cd02911 225 PENIEWLV 232 (233)
T ss_pred chHHHHhh
Confidence 99998764
No 12
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=100.00 E-value=1.7e-35 Score=283.82 Aligned_cols=203 Identities=22% Similarity=0.252 Sum_probs=167.7
Q ss_pred CCCCCcHHHHHHHHHhC--CCeEEeCcccch--------h--------hccCh----hhhhhhhhccCCCCCEEEEecCC
Q 013813 110 MVDNSELPFRMLCRRYG--AEAAYTPMLHSR--------I--------FTESE----KYRNEEFATCKEDRPLFVQFCAN 167 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~G--a~l~~Temisa~--------~--------l~~~~----~~~~~~~~~~~~e~plivQL~g~ 167 (436)
|+|.||..| |+++. +++++-.-++.. . |..+. .....++....+..|+++|+.++
T Consensus 1 mag~~d~~~---~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~~~~~vivnv~~~ 77 (231)
T TIGR00736 1 MAGITDAEF---CRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAESRALVSVNVRFV 77 (231)
T ss_pred CCCcchHHH---HHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHhhcCCEEEEEecC
Confidence 889999977 55553 566665544321 1 11111 11112223334567999999999
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHH
Q 013813 168 DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 247 (436)
Q Consensus 168 d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~ 247 (436)
+++++.++++.+++++|+||||||||++.+.+.++|++|+++|+++.++++++++ .++||+||+|++++..+..++++.
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~ 156 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALN 156 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999994 589999999998876788999999
Q ss_pred HHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 248 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 248 le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++++|+|+|+||.++.. .+.++|+.|+++++.++ +|||+||||+|++|+.++++ +|||+||||||++.+
T Consensus 157 l~~aGad~i~Vd~~~~g-----~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYPG-----KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFVSVARAILKG 226 (231)
T ss_pred HHHcCCCEEEEeeCCCC-----CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeEEEcHhhccC
Confidence 99999999999976532 12389999999999985 99999999999999999998 699999999999976
No 13
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-35 Score=293.17 Aligned_cols=261 Identities=32% Similarity=0.567 Sum_probs=219.9
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhh---------------hhhhccC-CCCCEEEEec
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRN---------------EEFATCK-EDRPLFVQFC 165 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~---------------~~~~~~~-~e~plivQL~ 165 (436)
+++++||||+.++++|.|.|+-+||++++|||-|.+..|..+....+ ..|.+++ +...+++|++
T Consensus 10 ~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rlilQ~g 89 (477)
T KOG2334|consen 10 RNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRLILQIG 89 (477)
T ss_pred cCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeEEEEec
Confidence 67999999999999999999999999999999988765433211111 1233443 3457999999
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 245 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~a 245 (436)
.++++-..++|+++.....+||+|||||..+...+|+|++|+.+|+.+..|+..+.+...+||++|||+.++.++++++.
T Consensus 90 T~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv 169 (477)
T KOG2334|consen 90 TASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLV 169 (477)
T ss_pred CCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHH
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCC---HHHHHHHHHhcCcceeeeehHHhh
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRH---MEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s---~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+.+.+.|+..|+||+||.+++... ++.-++++.+.+.+. +|||.|||+.+ ..|+....+.+|+++|||+|++..
T Consensus 170 ~ri~~tgi~ai~vh~rt~d~r~~~--~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~ 247 (477)
T KOG2334|consen 170 KRICATGIAAITVHCRTRDERNQE--PATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES 247 (477)
T ss_pred HHHHhcCCceEEEEeeccccCCCC--CCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence 999999999999999999976544 677888999999886 99999999999 788888888899999999999999
Q ss_pred CCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q 013813 322 NPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLG 379 (436)
Q Consensus 322 nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~R~hl~~~l~ 379 (436)
||.+|..-. ..+..+.+++|+.++.+|...+...+.-+..++.
T Consensus 248 n~SiF~~eG---------------~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~ 290 (477)
T KOG2334|consen 248 NPSIFREEG---------------CLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILR 290 (477)
T ss_pred CCceeeecC---------------CchHHHHHHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 999997421 2334567888998887765444334444444333
No 14
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=1.2e-34 Score=288.70 Aligned_cols=222 Identities=23% Similarity=0.305 Sum_probs=181.8
Q ss_pred CCcEEEcc-CCCCCcHHHHHHHHHhCCCeEEe---------------------CcccchhhccC-hhhhhhhhh--ccCC
Q 013813 102 RPKLIVAP-MVDNSELPFRMLCRRYGAEAAYT---------------------PMLHSRIFTES-EKYRNEEFA--TCKE 156 (436)
Q Consensus 102 ~~~i~lAP-M~gvtd~~fR~l~~~~Ga~l~~T---------------------emisa~~l~~~-~~~~~~~~~--~~~~ 156 (436)
++|+++|| |.+.++..||.+++. |+++++| +|+++..+.+. .......+. ..+.
T Consensus 11 ~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~ 89 (300)
T TIGR01037 11 KNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEF 89 (300)
T ss_pred CCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccC
Confidence 67999999 579999999998875 9999999 66666665442 211111121 2233
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC---CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEP---YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~---g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
+.|+++||+|++++++.++|+.+++ ++|+||||+|||+.+ ++|+.++++++++.+|++++++.+++||+||++
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~ 165 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKTDVPVFAKLS 165 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 5699999999999999999998873 489999999999964 489999999999999999999999999999987
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCccc--------------ccCCCCCccC----HHHHHHHHhhCCCcEEEccCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------EKDGKKFRAD----WNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~--------------~~~~~~g~ad----~~~i~~ik~~~~iPVianGGI 295 (436)
. +.++..++++.++++|+|+|+||+++.. ...+++|++. ++.++++++.+++|||+||||
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI 243 (300)
T TIGR01037 166 P--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGI 243 (300)
T ss_pred C--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCC
Confidence 5 4567889999999999999999865421 0112344444 478899999999999999999
Q ss_pred CCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 296 RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
.|++|+.++++ .|||+||+||+++.|||+|.++..
T Consensus 244 ~s~~da~~~l~-~GAd~V~igr~~l~~p~~~~~i~~ 278 (300)
T TIGR01037 244 TSFEDALEFLM-AGASAVQVGTAVYYRGFAFKKIIE 278 (300)
T ss_pred CCHHHHHHHHH-cCCCceeecHHHhcCchHHHHHHH
Confidence 99999999998 599999999999999999987753
No 15
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.98 E-value=3.9e-32 Score=270.97 Aligned_cols=262 Identities=19% Similarity=0.215 Sum_probs=196.4
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHHHH--HHhCCCcEEEccCCCCCcH-HHHHHH
Q 013813 46 LLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWAHW--TKLGRPKLIVAPMVDNSEL-PFRMLC 122 (436)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lg~~~i~lAPM~gvtd~-~fR~l~ 122 (436)
||..++.| ..=.||..++|.+.+......++.+..++++. +++... +|-.+.-.+ -||.-.
T Consensus 1 ~l~~~~~G------------l~l~nPi~~aag~~~~~~~~~~~~~~~G~Gavv~kti~~~----~~~~gn~~pr~~~~~~ 64 (299)
T cd02940 1 DLSVTFCG------------IKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLD----KDIVTNVSPRIARLRT 64 (299)
T ss_pred CCceEECC------------EEcCCCCEeCCcCCCCCHHHHHHHHHhCCCEEEeccccCc----CCCCCCCCCeEEEeCC
Confidence 45667777 67789999998776655555655555555532 443322 122221111 111000
Q ss_pred H-HhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHHHHHHHcC-CCcEEEEecCCCchhhhc
Q 013813 123 R-RYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLNAARRVEP-YCDYVDINLGCPQRIARR 199 (436)
Q Consensus 123 ~-~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~ 199 (436)
- ..-.++.++||+++..+....+.... +.....+.|+++|++|+ +++++.++|+.+++ |+|+||||+|||+....+
T Consensus 65 ~~~n~~g~~n~e~~s~~~~~~~~~~~~~-~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~ 143 (299)
T cd02940 65 SGRGQIGFNNIELISEKPLEYWLKEIRE-LKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPER 143 (299)
T ss_pred CchhcccccCCccccccCHHHHHHHHHH-HHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCC
Confidence 0 02236789999998876543332222 22212378999999998 99999999998875 899999999999984444
Q ss_pred CcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec--------------------
Q 013813 200 GNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH-------------------- 259 (436)
Q Consensus 200 ~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH-------------------- 259 (436)
++|+.++++|+.+.+|++++++.+++||+||+|. +..+..++++.++++|+|+|+++
T Consensus 144 -~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~ 220 (299)
T cd02940 144 -GMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGV 220 (299)
T ss_pred -CCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccc
Confidence 5899999999999999999999999999999886 44578899999999999999854
Q ss_pred -cCcccccCCCCCccC----HHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 260 -GRTRDEKDGKKFRAD----WNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 260 -gRt~~~~~~~~g~ad----~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
+|+.. .+++|++. |+.|.++++.+ ++|||+||||.|.+|+.+++. +|||+|||||+++. +|.++.++.
T Consensus 221 ~~~~~~--gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i~ 296 (299)
T cd02940 221 EGKTTY--GGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDMC 296 (299)
T ss_pred cCCCCc--CcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHH-cCCChheEceeecccCCcHHHHHh
Confidence 34332 35667766 89999999999 899999999999999999998 69999999999877 999998775
No 16
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.97 E-value=1.4e-30 Score=258.87 Aligned_cols=223 Identities=19% Similarity=0.233 Sum_probs=177.4
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhh----------------------hhhhh--ccCCC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYR----------------------NEEFA--TCKED 157 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~----------------------~~~~~--~~~~e 157 (436)
++|+++|-=..-++..||.++...|++.++|++|+.+....+...+ ...+. ....+
T Consensus 10 ~nP~~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~ 89 (296)
T cd04740 10 KNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFG 89 (296)
T ss_pred CCCCEECCCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCC
Confidence 6788888322228889999998777999999999865432221110 00111 12357
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
.|+++||+|+++++++++|+.+++ |+|+||||++||+.+ +.|+.++++++++.++++++++.+++||+||++.
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-- 163 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-- 163 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC--
Confidence 899999999999999999998866 799999999999963 2378889999999999999999999999999765
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCccc---------c-----cCCCCCcc----CHHHHHHHHhhCCCcEEEccCCCCH
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRD---------E-----KDGKKFRA----DWNAIKAVKNALRIPVLANGNVRHM 298 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~---------~-----~~~~~g~a----d~~~i~~ik~~~~iPVianGGI~s~ 298 (436)
+.++..++++.++++|+|+|++++++.. . ..+++|++ .|+.++++++.+++|||++|||.++
T Consensus 164 ~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 164 NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 4457889999999999999998644321 0 01233333 5688999999999999999999999
Q ss_pred HHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 299 EDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
+|+.++++. |||+||+||+++.||++|.++..
T Consensus 244 ~da~~~l~~-GAd~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 244 EDALEFLMA-GASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred HHHHHHHHc-CCCEEEEchhhhcChHHHHHHHH
Confidence 999999985 99999999999999999998763
No 17
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.97 E-value=3.8e-31 Score=275.34 Aligned_cols=263 Identities=18% Similarity=0.231 Sum_probs=200.8
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHHH--HHHhCCCcEEEccCCCCC-cHHHHH
Q 013813 44 DDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWAH--WTKLGRPKLIVAPMVDNS-ELPFRM 120 (436)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lg~~~i~lAPM~gvt-d~~fR~ 120 (436)
|+||.+++.| ..=.||..++|.|.+++.....+.++.+|++ .+++. .+..... -.-||.
T Consensus 1 m~~L~~~~~G------------l~l~nPv~~aag~~~~~~~~~~~~~~~g~Gavv~kti~------~~~gn~~~pr~~~~ 62 (420)
T PRK08318 1 MADLSITFCG------------IKSPNPFWLASAPPTNKYYNVARAFEAGWGGVVWKTLG------PPIVNVSSPRFGAL 62 (420)
T ss_pred CCCceEEECC------------EecCCCcEeCCcCCCCCHHHHHHHHHhCCCEEEEeecC------CCCCCCCCCeEEEe
Confidence 6789999999 8999999999999988887777777766663 24443 1111211 111111
Q ss_pred HHH-HhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHHHHHHHcC-CCcEEEEecCCCchhh
Q 013813 121 LCR-RYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLNAARRVEP-YCDYVDINLGCPQRIA 197 (436)
Q Consensus 121 l~~-~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~ 197 (436)
-.. ..-.++.++||+++..+....+.... +.....+.|+++||+|+ ++++++++++.+++ |+|+||||+|||++..
T Consensus 63 ~~~~~~~~g~~n~~~~s~~~~~~~~~~~~~-~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~ 141 (420)
T PRK08318 63 VKEDRRFIGFNNIELITDRPLEVNLREIRR-VKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMS 141 (420)
T ss_pred cCCCcccccccCcccccccCHHHHHHHHHH-HHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcc
Confidence 000 01125778899987766443322222 22122358999999999 99999999998865 7999999999999543
Q ss_pred hcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-------------------
Q 013813 198 RRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV------------------- 258 (436)
Q Consensus 198 ~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V------------------- 258 (436)
.+ ++|+.++++++.+.+|++++++.+++||+||+|. +..+..++++.++++|+|+|++
T Consensus 142 ~~-~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p 218 (420)
T PRK08318 142 ER-GMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP--NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMP 218 (420)
T ss_pred cc-CCcccccCCHHHHHHHHHHHHhccCCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCc
Confidence 34 5799999999999999999999999999999885 4456789999999999999984
Q ss_pred --ccCcccccCCCCCcc----CHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchh
Q 013813 259 --HGRTRDEKDGKKFRA----DWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAG 328 (436)
Q Consensus 259 --HgRt~~~~~~~~g~a----d~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~ 328 (436)
|+|+.. .+++|++ .|+.|+++++.+ ++|||++|||.|.+|+.+++. .|||+||||||++. +|.++.+
T Consensus 219 ~~~~~~~~--gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~ 295 (420)
T PRK08318 219 IVNGKSSH--GGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVED 295 (420)
T ss_pred eecCCCCc--ccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHH
Confidence 333322 3456666 599999999987 899999999999999999998 59999999999888 8999887
Q ss_pred hhh
Q 013813 329 FRT 331 (436)
Q Consensus 329 i~~ 331 (436)
+..
T Consensus 296 I~~ 298 (420)
T PRK08318 296 MIS 298 (420)
T ss_pred HHH
Confidence 764
No 18
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.96 E-value=1.2e-28 Score=250.35 Aligned_cols=232 Identities=18% Similarity=0.197 Sum_probs=183.9
Q ss_pred CCcEEEccCC-------CCCcHHHHHHHHHh--CCCeEEeCcccchh----h-----ccChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMV-------DNSELPFRMLCRRY--GAEAAYTPMLHSRI----F-----TESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~-------gvtd~~fR~l~~~~--Ga~l~~Temisa~~----l-----~~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||. .+|+..++.+.++. |+++++||.+.... . ..+... +...-..+..+.+
T Consensus 13 kNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~ 92 (343)
T cd04734 13 RNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAV 92 (343)
T ss_pred cCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhcCCe
Confidence 7899999995 34777777777655 68999999876431 1 011111 1111234567888
Q ss_pred EEEEecCC-----------------C---------------------HHHHHHHHHHH-cCCCcEEEEec--C-------
Q 013813 160 LFVQFCAN-----------------D---------------------PEILLNAARRV-EPYCDYVDINL--G------- 191 (436)
Q Consensus 160 livQL~g~-----------------d---------------------~e~~~~AA~~v-~~g~D~IdLN~--G------- 191 (436)
+++||+-. + .++|++||+++ +.|||+||||+ |
T Consensus 93 ~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFl 172 (343)
T cd04734 93 IMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFL 172 (343)
T ss_pred EEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhh
Confidence 99998621 0 37889999776 56999999999 5
Q ss_pred CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC--------ChhhHHHHHHHHHHcC-ccEEEeccCc
Q 013813 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP--------NLQDTIKYAKMLEDAG-CSLLAVHGRT 262 (436)
Q Consensus 192 CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~--------~~~d~~~~ak~le~aG-~d~I~VHgRt 262 (436)
||..|.|+|+||++|.++.+++.+|+++|++.++.++.||+|++. +.++++++++.++++| +|+|+||++.
T Consensus 173 sp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~ 252 (343)
T cd04734 173 SPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGS 252 (343)
T ss_pred CCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 788999999999999999999999999999999988889998863 4568899999999998 8999997554
Q ss_pred cccc---------CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhhh
Q 013813 263 RDEK---------DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 333 (436)
Q Consensus 263 ~~~~---------~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~~ 333 (436)
.... ..+....+|+.++.+++.+++||++||||.++++++++++.++||+||+||+++.||||++++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g~ 332 (343)
T cd04734 253 YYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREGR 332 (343)
T ss_pred CCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcCC
Confidence 3221 0112234689999999999999999999999999999999988999999999999999999987654
No 19
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.96 E-value=7.8e-29 Score=247.16 Aligned_cols=169 Identities=21% Similarity=0.324 Sum_probs=144.7
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-C-CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~-g-~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
.+.|+++||+|+++++|+++|+.+++ | +|+||||++||+.. ++ |..+.++++++.++++++++.+++||+||++
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~---~g-g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK---HG-GMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC---CC-ccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 37899999999999999999998876 6 99999999999841 22 7788999999999999999999999999987
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccc--------------cCCCCC----ccCHHHHHHHHhhCCCcEEEccCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKF----RADWNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~--------------~~~~~g----~ad~~~i~~ik~~~~iPVianGGI 295 (436)
. +.++..++++.++++|+|+|++++++... ..+.++ +..+++++++++.+++|||++|||
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI 243 (301)
T PRK07259 166 P--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGI 243 (301)
T ss_pred C--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCC
Confidence 5 44688899999999999999986543211 011222 246899999999999999999999
Q ss_pred CCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhh
Q 013813 296 RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
.|++|+.+++.. |||+||+||+++.+|++|.++..
T Consensus 244 ~~~~da~~~l~a-GAd~V~igr~ll~~P~~~~~i~~ 278 (301)
T PRK07259 244 SSAEDAIEFIMA-GASAVQVGTANFYDPYAFPKIIE 278 (301)
T ss_pred CCHHHHHHHHHc-CCCceeEcHHHhcCcHHHHHHHH
Confidence 999999999985 99999999999999999998764
No 20
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.96 E-value=3.2e-28 Score=241.00 Aligned_cols=169 Identities=22% Similarity=0.356 Sum_probs=147.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
.+.|+++||+|++++++.++++.+++ |+|+||||++||+... |..++++++.+.++++++++.+++||+||++.
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 57999999999999999999988866 7999999999999532 44588999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCccccc--------------CCCCCc----cCHHHHHHHHhhC--CCcEEEccC
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------DGKKFR----ADWNAIKAVKNAL--RIPVLANGN 294 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~--------------~~~~g~----ad~~~i~~ik~~~--~iPVianGG 294 (436)
+.+.++..++++.++++|+|+|++|+++.... .+.+|. ..+++++++++.+ ++|||++||
T Consensus 172 ~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GG 251 (289)
T cd02810 172 YFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGG 251 (289)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 88888999999999999999999998764211 111222 2578899999988 899999999
Q ss_pred CCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhh
Q 013813 295 VRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 330 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~ 330 (436)
|.|++|+.+++.. |||+||+||+++.| |++|.++.
T Consensus 252 I~~~~da~~~l~~-GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 252 IDSGEDVLEMLMA-GASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred CCCHHHHHHHHHc-CccHheEcHHHHhcCccHHHHHh
Confidence 9999999999985 99999999999999 99999875
No 21
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.96 E-value=4.3e-28 Score=245.56 Aligned_cols=230 Identities=14% Similarity=0.145 Sum_probs=183.4
Q ss_pred CCcEEEccCCC---------CCcHHHHHHHHHh--CCCeEEeCcccch--hh-------ccChhh----hhhhhhccCCC
Q 013813 102 RPKLIVAPMVD---------NSELPFRMLCRRY--GAEAAYTPMLHSR--IF-------TESEKY----RNEEFATCKED 157 (436)
Q Consensus 102 ~~~i~lAPM~g---------vtd~~fR~l~~~~--Ga~l~~Temisa~--~l-------~~~~~~----~~~~~~~~~~e 157 (436)
+|+|++|||.. .|+..++.+.++. |+++++||.+... .. ..+... ++..-..+..+
T Consensus 15 kNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~G 94 (337)
T PRK13523 15 KNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHG 94 (337)
T ss_pred ecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhcC
Confidence 68999999953 2445566555544 6899999966432 11 011111 11112345678
Q ss_pred CCEEEEecCC-----------------------C------------HHHHHHHHHHHc-CCCcEEEEecC---------C
Q 013813 158 RPLFVQFCAN-----------------------D------------PEILLNAARRVE-PYCDYVDINLG---------C 192 (436)
Q Consensus 158 ~plivQL~g~-----------------------d------------~e~~~~AA~~v~-~g~D~IdLN~G---------C 192 (436)
..+++||... . .++|++||+++. +|||+||||+| |
T Consensus 95 ~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlS 174 (337)
T PRK13523 95 AKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLS 174 (337)
T ss_pred CEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcC
Confidence 8899998431 0 378889997764 59999999998 8
Q ss_pred CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------CCChhhHHHHHHHHHHcCccEEEeccCccccc
Q 013813 193 PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 266 (436)
Q Consensus 193 P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~ 266 (436)
|..|.|+|.||++|.++.+++.+|+++|+++++.||+||++. |.+.++..++++.+++.|+|+|+||+++....
T Consensus 175 p~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~ 254 (337)
T PRK13523 175 PLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPA 254 (337)
T ss_pred CccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC
Confidence 999999999999999999999999999999999999999997 45678899999999999999999999874321
Q ss_pred --CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 267 --DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 267 --~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
..++ ..+|++.+++++.+++||+++|+|.++++++++++.++||+|++||+++.||+|+.++...
T Consensus 255 ~~~~~~-~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~ 321 (337)
T PRK13523 255 RIDVYP-GYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKE 321 (337)
T ss_pred CCCCCc-cccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHH
Confidence 1122 3478999999999999999999999999999999998899999999999999999998753
No 22
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.95 E-value=3.5e-27 Score=239.15 Aligned_cols=230 Identities=19% Similarity=0.208 Sum_probs=180.6
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh--CCCeEEeCcccchh----hc---c-----Chhh----hhhhhhccC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY--GAEAAYTPMLHSRI----FT---E-----SEKY----RNEEFATCK 155 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~--Ga~l~~Temisa~~----l~---~-----~~~~----~~~~~~~~~ 155 (436)
+|+|++|||.. .|+.....+.++. |+++++||.+.... .. . +... ++..-..+.
T Consensus 14 kNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~ 93 (338)
T cd04733 14 PNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAFREWAAAAKA 93 (338)
T ss_pred cccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHHHHHHHHHHHHh
Confidence 68999999953 3566666666655 68999999754321 11 0 1111 111112345
Q ss_pred CCCCEEEEecCC-----------------------------------------CHHHHHHHHHHHc-CCCcEEEEecCC-
Q 013813 156 EDRPLFVQFCAN-----------------------------------------DPEILLNAARRVE-PYCDYVDINLGC- 192 (436)
Q Consensus 156 ~e~plivQL~g~-----------------------------------------d~e~~~~AA~~v~-~g~D~IdLN~GC- 192 (436)
.+..+++||+.. ..++|++||+++. .|||+||||+||
T Consensus 94 ~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~g 173 (338)
T cd04733 94 NGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHG 173 (338)
T ss_pred cCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhh
Confidence 667777886530 1478899998765 599999999996
Q ss_pred --------CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec------cCCChhhHHHHHHHHHHcCccEE
Q 013813 193 --------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR------VFPNLQDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 193 --------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR------lg~~~~d~~~~ak~le~aG~d~I 256 (436)
|..|.|+|.||++|+++++++.++|++|++++ ++||.||++ .|++.++++++++.|++.|+|+|
T Consensus 174 yLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~i 253 (338)
T cd04733 174 YLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLV 253 (338)
T ss_pred hHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999998 489999997 46788899999999999999999
Q ss_pred EeccCcccccCCC---------CCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 257 AVHGRTRDEKDGK---------KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 257 ~VHgRt~~~~~~~---------~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
.||+++..+.... .....++..++||+.+++||+++|+|.++++++++++.++||+|++||+++.||+|+.
T Consensus 254 ev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~ 333 (338)
T cd04733 254 ELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPN 333 (338)
T ss_pred EecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHH
Confidence 9999976432210 0112368888999999999999999999999999999988999999999999999999
Q ss_pred hhhh
Q 013813 328 GFRT 331 (436)
Q Consensus 328 ~i~~ 331 (436)
+++.
T Consensus 334 k~~~ 337 (338)
T cd04733 334 KLLA 337 (338)
T ss_pred HHhc
Confidence 8763
No 23
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.95 E-value=1.9e-27 Score=236.75 Aligned_cols=250 Identities=14% Similarity=0.117 Sum_probs=174.5
Q ss_pred CCCCCccccCCCCCCCCCCchhHhHHHHHHHH--HHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccC
Q 013813 66 PSSLPETASSSLPSPRGYLSGEARAERAWAHW--TKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTES 143 (436)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~ 143 (436)
..-.||..++|.+.+......++.++.+|++. +++... |-.+.-.+ | +.+. ..+++...-++...+...
T Consensus 6 l~l~nPi~~Asg~~~~~~e~~~~~~~~G~Gavv~ktit~~-----~~~gn~~p--r-~~~~-~~~~~N~~G~~n~g~~~~ 76 (294)
T cd04741 6 LTISPPLMNAAGPWCTTLEDLLELAASSTGAVTTRSSTLA-----GRPGNPEP--R-YYAF-PLGSINSLGLPNLGLDYY 76 (294)
T ss_pred eeCCCCCEECCCCCCCCHHHHHHHHHcCCcEEEeCcccCC-----CCCCCCCC--c-EEec-CccccccccCCCcCHHHH
Confidence 67789999998887766666666677777744 554432 22222211 1 1111 222222222222222111
Q ss_pred hhhhhhhhh-ccCCCCCEEEEecCCCHHHHHHHHHHHcC----CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHH
Q 013813 144 EKYRNEEFA-TCKEDRPLFVQFCANDPEILLNAARRVEP----YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 218 (436)
Q Consensus 144 ~~~~~~~~~-~~~~e~plivQL~g~d~e~~~~AA~~v~~----g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~ 218 (436)
......... ....+.|+++||+|+ ++++.++++.+++ ++|+||||++||+.. + +..+..+++.+.+|++
T Consensus 77 ~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~---~--~~~~~~~~~~~~~i~~ 150 (294)
T cd04741 77 LEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP---G--KPPPAYDFDATLEYLT 150 (294)
T ss_pred HHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC---C--cccccCCHHHHHHHHH
Confidence 111111001 113578999999999 9999999987754 689999999999952 1 2357789999999999
Q ss_pred HHhcccCccEEEEeccCCChhhHHHHHHHHHHc--CccEEEe----------cc-Ccc-----cc-cCCCCCc----cCH
Q 013813 219 KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA--GCSLLAV----------HG-RTR-----DE-KDGKKFR----ADW 275 (436)
Q Consensus 219 av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~a--G~d~I~V----------Hg-Rt~-----~~-~~~~~g~----ad~ 275 (436)
++++.+++||+||+|.+++..+..++++.+.++ |+++|++ |. |+. .+ ..+.+|+ ..+
T Consensus 151 ~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al 230 (294)
T cd04741 151 AVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLAL 230 (294)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHH
Confidence 999999999999999988877888899999888 9999995 43 221 11 1122332 245
Q ss_pred HHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhhh
Q 013813 276 NAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 331 (436)
Q Consensus 276 ~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~~ 331 (436)
+.|+++++.+ ++|||++|||.|.+|+.+++. .|||+|||||+++. +||+|.++..
T Consensus 231 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~~ 288 (294)
T cd04741 231 GNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARIEK 288 (294)
T ss_pred HHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHHHH
Confidence 6678888888 499999999999999999998 59999999999995 9999998753
No 24
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.95 E-value=1.3e-27 Score=244.75 Aligned_cols=266 Identities=17% Similarity=0.211 Sum_probs=200.7
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHH--HHHHhCCCcEEEccCCCCCcHHH
Q 013813 41 QDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWA--HWTKLGRPKLIVAPMVDNSELPF 118 (436)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lg~~~i~lAPM~gvtd~~f 118 (436)
...|+||..++.| .+.+||+|++|.|.+....+.++.++++|+ .||+++..+ ++....+.
T Consensus 5 ~~~~~dLst~~~G------------l~l~NP~i~ASgp~t~~~e~~~~~~~~g~GAVV~KTi~~~~---~~~~n~~p--- 66 (385)
T PLN02495 5 AASEPDLSVTVNG------------LKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDA---SKVINVTP--- 66 (385)
T ss_pred ccCCCcceEEECC------------EEcCCCcEeCCccCCCCHHHHHHHHhcCCeEEEeccccCCc---cccCCCCC---
Confidence 3459999999999 999999999999999999999999999999 889887432 12222221
Q ss_pred HHHHHH-------h---CCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHHHHHHHHcC-CCcEE
Q 013813 119 RMLCRR-------Y---GAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILLNAARRVEP-YCDYV 186 (436)
Q Consensus 119 R~l~~~-------~---Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~~AA~~v~~-g~D~I 186 (436)
| ++.- + -.++...|.++.+.+......... ++...+++|+|++|+| .+++++.+.++.+++ |+|+|
T Consensus 67 r-~~~~~~g~~~~~~~n~iGl~N~~~~s~~g~~~~l~~i~~-~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~i 144 (385)
T PLN02495 67 R-YARLRAGANGSAKGRVIGWQNIELISDRPFETMLAEFKQ-LKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDAL 144 (385)
T ss_pred e-EEecCcccccccccccccccCcccccccCHHHHHHHHHH-HHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEE
Confidence 1 1111 1 114455556655544332222211 2222347899999977 899999999998876 79999
Q ss_pred EEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc--
Q 013813 187 DINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-- 264 (436)
Q Consensus 187 dLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~-- 264 (436)
|||++||+....++ +|..+.++|+.+.+|++++++.+.+||.||+ +++..+..++++.+.++|+|+|++..++..
T Consensus 145 ELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL--sPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~ 221 (385)
T PLN02495 145 EINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAKATVPVWAKM--TPNITDITQPARVALKSGCEGVAAINTIMSVM 221 (385)
T ss_pred EEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHhhcCceEEEe--CCChhhHHHHHHHHHHhCCCEEEEecccCccc
Confidence 99999999765555 5899999999999999999999999999995 456677889999999999999988654431
Q ss_pred -----c------------cCCCCCc----cCHHHHHHHHhhC------CCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 265 -----E------------KDGKKFR----ADWNAIKAVKNAL------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 265 -----~------------~~~~~g~----ad~~~i~~ik~~~------~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
. ..+.+|+ ..+..+.++++.+ ++||++.|||.|.+|+.+++.. ||+.|++|+
T Consensus 222 ~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~a-GAs~VQv~T 300 (385)
T PLN02495 222 GINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILL-GADTVQVCT 300 (385)
T ss_pred ccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHh-CCCceeEee
Confidence 0 1112222 2334455566654 4999999999999999999997 999999999
Q ss_pred HHhhC-Cccchhhh
Q 013813 318 SLLEN-PALFAGFR 330 (436)
Q Consensus 318 gal~n-P~lf~~i~ 330 (436)
+++.+ |.++.++.
T Consensus 301 a~~~~Gp~vi~~i~ 314 (385)
T PLN02495 301 GVMMHGYPLVKNLC 314 (385)
T ss_pred eeeecCcHHHHHHH
Confidence 99888 99988764
No 25
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.95 E-value=7.7e-27 Score=234.83 Aligned_cols=229 Identities=24% Similarity=0.311 Sum_probs=181.1
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh--CCCeEEeCcccchh----h-----ccChh----hhhhhhhccCCCC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY--GAEAAYTPMLHSRI----F-----TESEK----YRNEEFATCKEDR 158 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~--Ga~l~~Temisa~~----l-----~~~~~----~~~~~~~~~~~e~ 158 (436)
+|++++|||.. .|+..++.+.++. |+++++||.+.... . ..++. .+...-..+..+.
T Consensus 12 ~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~ 91 (327)
T cd02803 12 KNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGA 91 (327)
T ss_pred ccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhCCC
Confidence 78999999963 4666677776655 68999999765321 1 01111 1111112345566
Q ss_pred CEEEEecCCC--------------------------------------HHHHHHHHHHH-cCCCcEEEEecC--------
Q 013813 159 PLFVQFCAND--------------------------------------PEILLNAARRV-EPYCDYVDINLG-------- 191 (436)
Q Consensus 159 plivQL~g~d--------------------------------------~e~~~~AA~~v-~~g~D~IdLN~G-------- 191 (436)
.+++||+... .++|++||+++ +.|||+||||++
T Consensus 92 ~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qF 171 (327)
T cd02803 92 KIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQF 171 (327)
T ss_pred HhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHh
Confidence 6777765210 37888999776 459999999987
Q ss_pred -CCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccC------CChhhHHHHHHHHHHcCccEEEeccCc
Q 013813 192 -CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHGRT 262 (436)
Q Consensus 192 -CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg------~~~~d~~~~ak~le~aG~d~I~VHgRt 262 (436)
||..|.+++.||+++.++.+++.++++++++.+ ++||.||++.. ++.+++.++++.+++.|+|+|+|++++
T Consensus 172 lsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 172 LSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred cCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 898899999999999999999999999999998 68999999863 456788999999999999999999987
Q ss_pred ccccCC------CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 263 RDEKDG------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 263 ~~~~~~------~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
..+... .....+++.++.+++.+++||+++|||.|+++++++++.++||+|++||+++.||+|+.+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 252 YESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred CcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHh
Confidence 653221 11245788899999999999999999999999999999889999999999999999999875
No 26
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.95 E-value=4.4e-27 Score=237.48 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=145.9
Q ss_pred CCCCEEEEecCCC-------HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC---
Q 013813 156 EDRPLFVQFCAND-------PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--- 225 (436)
Q Consensus 156 ~e~plivQL~g~d-------~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--- 225 (436)
.+.|+++||+|++ .+++++.++.+..++|+||||++||+.. |...+++++.+.++++++++.++
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~~~~~~~~ 200 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVKEERNKLG 200 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------ccccccCHHHHHHHHHHHHHHHhhcc
Confidence 4789999999997 7889999988877899999999999852 34448999999999999999886
Q ss_pred --ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccccc-----------CCCCCc----cCHHHHHHHHhhC--C
Q 013813 226 --VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNAL--R 286 (436)
Q Consensus 226 --iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~-----------~~~~g~----ad~~~i~~ik~~~--~ 286 (436)
+||+||++.+.+.++..++++.++++|+|+|++|+++.... .+++|+ ..|+.++.+++.+ +
T Consensus 201 ~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ 280 (327)
T cd04738 201 KKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGK 280 (327)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCC
Confidence 99999999877777889999999999999999999875321 234444 3488999999998 7
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhhh
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFRT 331 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~~ 331 (436)
+||+++|||.|++|+.+++. .|||+|||||+++.+ |++|.++..
T Consensus 281 ipIi~~GGI~t~~da~e~l~-aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 281 IPIIGVGGISSGEDAYEKIR-AGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred CcEEEECCCCCHHHHHHHHH-cCCCHHhccHHHHhhCcHHHHHHHh
Confidence 99999999999999999998 599999999999775 999998753
No 27
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.94 E-value=3e-26 Score=233.65 Aligned_cols=230 Identities=20% Similarity=0.287 Sum_probs=176.6
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh-CCCeEEeCcccchh----hc-----cChh----hhhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY-GAEAAYTPMLHSRI----FT-----ESEK----YRNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~-Ga~l~~Temisa~~----l~-----~~~~----~~~~~~~~~~~e~p 159 (436)
+|+|++|||.. +|+..+..+.++. |+++++||.+.... .. .+.. .+...-..+..+..
T Consensus 14 kNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~ 93 (353)
T cd04735 14 KNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAIKSKGAK 93 (353)
T ss_pred eCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHHHHHHHHHHhCCCe
Confidence 68999999952 4666666666554 68899999765421 10 0111 11121234567788
Q ss_pred EEEEecCCC----------------------------------------HHHHHHHHHHHc-CCCcEEEEecC-------
Q 013813 160 LFVQFCAND----------------------------------------PEILLNAARRVE-PYCDYVDINLG------- 191 (436)
Q Consensus 160 livQL~g~d----------------------------------------~e~~~~AA~~v~-~g~D~IdLN~G------- 191 (436)
+++||+-.. .++|++||++++ .|||+||||++
T Consensus 94 i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~q 173 (353)
T cd04735 94 AILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQ 173 (353)
T ss_pred EEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHH
Confidence 888884210 368889997765 59999999974
Q ss_pred --CCchhhhcCcccccccCChHHHHHHHHHHhcccC----ccEEEEeccCC--------ChhhHHHHHHHHHHcCccEEE
Q 013813 192 --CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN----VPVSCKIRVFP--------NLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 192 --CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~----iPVsVKiRlg~--------~~~d~~~~ak~le~aG~d~I~ 257 (436)
||..|.|+|.||+++.++.+++.||+++|+++++ .++.|++|++. +.++.+++++.++++|+|+|+
T Consensus 174 Flsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~ 253 (353)
T cd04735 174 FFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLH 253 (353)
T ss_pred hcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999999999999999987 66777777743 457889999999999999999
Q ss_pred eccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 258 VHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
||++.............+..++.+++.+ ++||+++|||.|+++++++++. |||+|++||+++.||+++.+++.+
T Consensus 254 Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~gR~liadPdl~~k~~~G 329 (353)
T cd04735 254 ISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALET-GADLVAIGRGLLVDPDWVEKIKEG 329 (353)
T ss_pred eccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc-CCChHHHhHHHHhCccHHHHHHcC
Confidence 9986543221111123567777788776 8999999999999999999998 899999999999999999998754
No 28
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.94 E-value=6.4e-26 Score=233.42 Aligned_cols=231 Identities=22% Similarity=0.249 Sum_probs=179.1
Q ss_pred CCcEEEccCCC--C-------CcHHHHHHHHHh--CCCeEEeCcccchh----h--------ccC-hh----hhhhhhhc
Q 013813 102 RPKLIVAPMVD--N-------SELPFRMLCRRY--GAEAAYTPMLHSRI----F--------TES-EK----YRNEEFAT 153 (436)
Q Consensus 102 ~~~i~lAPM~g--v-------td~~fR~l~~~~--Ga~l~~Temisa~~----l--------~~~-~~----~~~~~~~~ 153 (436)
+|++++|||.. . |+.....+.++. |+++++||...... . ..+ +. .++..-..
T Consensus 13 kNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~dav 92 (382)
T cd02931 13 KNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTERV 92 (382)
T ss_pred eCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHHHHHHHH
Confidence 68999999952 2 445555554444 78999999754321 0 001 11 11111234
Q ss_pred cCCCCCEEEEecCC----------------------------C-------------HHHHHHHHHHHc-CCCcEEEEec-
Q 013813 154 CKEDRPLFVQFCAN----------------------------D-------------PEILLNAARRVE-PYCDYVDINL- 190 (436)
Q Consensus 154 ~~~e~plivQL~g~----------------------------d-------------~e~~~~AA~~v~-~g~D~IdLN~- 190 (436)
+..+.++++||+.. . .++|++||++++ +|||+||||+
T Consensus 93 h~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~a 172 (382)
T cd02931 93 HAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAV 172 (382)
T ss_pred HHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 56788999999521 0 367889998774 5999999998
Q ss_pred --CC-------CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc--------------------CCChh
Q 013813 191 --GC-------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV--------------------FPNLQ 239 (436)
Q Consensus 191 --GC-------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl--------------------g~~~~ 239 (436)
|| |..|.|+|.||++|+++.+++.+|+++|++++ ++||++|++. |.+.+
T Consensus 173 h~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e 252 (382)
T cd02931 173 HEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLE 252 (382)
T ss_pred ccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHH
Confidence 76 88999999999999999999999999999998 5799999984 33567
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccC-C----CCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKD-G----KKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~-~----~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+.+++++.++++|+|+|+||+++..... . +.. ...++.++.+++.+++||+++|+|.++++++++++.++||+|
T Consensus 253 ~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V 332 (382)
T cd02931 253 EGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMI 332 (382)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 8899999999999999999998754311 0 101 123678899999999999999999999999999999889999
Q ss_pred eeehHHhhCCccchhhhhh
Q 013813 314 LSAESLLENPALFAGFRTA 332 (436)
Q Consensus 314 mIGRgal~nP~lf~~i~~~ 332 (436)
++||+++.||+|+++++.+
T Consensus 333 ~~gR~~ladP~l~~k~~~g 351 (382)
T cd02931 333 SLGRPLLADPDVVNKIRRG 351 (382)
T ss_pred eechHhHhCccHHHHHHcC
Confidence 9999999999999998764
No 29
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.94 E-value=8.5e-26 Score=228.81 Aligned_cols=229 Identities=19% Similarity=0.227 Sum_probs=176.5
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHHh--CCCeEEeCcccchhh---------ccChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRRY--GAEAAYTPMLHSRIF---------TESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~~--Ga~l~~Temisa~~l---------~~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.. .|+..+..+.++. |+++++||.+....- ..+... ++..-..+..+..
T Consensus 13 ~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~ 92 (336)
T cd02932 13 KNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQGAK 92 (336)
T ss_pred eccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhcCCc
Confidence 68999999953 3555565555544 789999997643210 011111 1111124556778
Q ss_pred EEEEecCC---------------------------------------------------CHHHHHHHHHHH-cCCCcEEE
Q 013813 160 LFVQFCAN---------------------------------------------------DPEILLNAARRV-EPYCDYVD 187 (436)
Q Consensus 160 livQL~g~---------------------------------------------------d~e~~~~AA~~v-~~g~D~Id 187 (436)
+++||+.. -.++|++||+++ +.|||+||
T Consensus 93 ~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVe 172 (336)
T cd02932 93 IGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAVEAGFDVIE 172 (336)
T ss_pred EEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 88886310 036888899765 56999999
Q ss_pred EecCC---------CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc------CCChhhHHHHHHHHHH
Q 013813 188 INLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLED 250 (436)
Q Consensus 188 LN~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl------g~~~~d~~~~ak~le~ 250 (436)
||+|| |..|.++++||++|+++++++.+|+++|++.+ ++||.||++. +++.+++.++++.+++
T Consensus 173 i~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~ 252 (336)
T cd02932 173 IHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKE 252 (336)
T ss_pred EccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHH
Confidence 99986 88999999999999999999999999999999 6899999983 5677889999999999
Q ss_pred cCccEEEeccCcc--cccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 251 AGCSLLAVHGRTR--DEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 251 aG~d~I~VHgRt~--~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
.|+|+|.||.... .+........+++.++++++.+++||+++|+|.++++++++++.+.||+||+||+++.||+|+.+
T Consensus 253 ~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 253 LGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLH 332 (336)
T ss_pred cCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence 9999999985432 22111111235688899999999999999999999999999998779999999999999999987
Q ss_pred hh
Q 013813 329 FR 330 (436)
Q Consensus 329 i~ 330 (436)
+.
T Consensus 333 ~~ 334 (336)
T cd02932 333 AA 334 (336)
T ss_pred Hh
Confidence 64
No 30
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.94 E-value=1.2e-25 Score=227.91 Aligned_cols=225 Identities=16% Similarity=0.213 Sum_probs=177.9
Q ss_pred CCcEEEccCCC--------CCcHHHHHHHHHh-CCCeEEeCcccchhh---------ccChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD--------NSELPFRMLCRRY-GAEAAYTPMLHSRIF---------TESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd~~fR~l~~~~-Ga~l~~Temisa~~l---------~~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.. +|+..++.+.++. | ++++||.+..... ..+.+. +...-..+..+.+
T Consensus 14 kNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~vh~~ga~ 92 (338)
T cd02933 14 KNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAKGGK 92 (338)
T ss_pred cCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCe
Confidence 78999999952 2556666555544 5 8899997754211 011111 1111134566778
Q ss_pred EEEEecC-----------------------------------C--C------------HHHHHHHHHHHc-CCCcEEEEe
Q 013813 160 LFVQFCA-----------------------------------N--D------------PEILLNAARRVE-PYCDYVDIN 189 (436)
Q Consensus 160 livQL~g-----------------------------------~--d------------~e~~~~AA~~v~-~g~D~IdLN 189 (436)
+++||.. . . .++|++||+++. .|||+||||
T Consensus 93 ~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih 172 (338)
T cd02933 93 IFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARNAIEAGFDGVEIH 172 (338)
T ss_pred EEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 8888732 0 0 367889998765 599999999
Q ss_pred cCC---------CchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccC---------CChhhHHHHHHHHHH
Q 013813 190 LGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVF---------PNLQDTIKYAKMLED 250 (436)
Q Consensus 190 ~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg---------~~~~d~~~~ak~le~ 250 (436)
+|| |..|.+.|.||++|.++.+++.+|+++|++.++. +|+||++.. .+.++..++++.+++
T Consensus 173 ~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~ 252 (338)
T cd02933 173 GANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNK 252 (338)
T ss_pred cccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHH
Confidence 998 9999999999999999999999999999999865 899999752 255788899999999
Q ss_pred cCccEEEe-ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 251 AGCSLLAV-HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 251 aG~d~I~V-HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
.|+|+|.| ||++..+. ...+|++++.+++.+++||+++|+|. ++++++++++++||+|++||+++.||||+.++
T Consensus 253 ~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~ 327 (338)
T cd02933 253 RGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANPDLVERL 327 (338)
T ss_pred cCCcEEEEecCCCCCcc----cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHH
Confidence 99999999 67654432 35789999999999999999999997 99999999998899999999999999999998
Q ss_pred hhh
Q 013813 330 RTA 332 (436)
Q Consensus 330 ~~~ 332 (436)
+.+
T Consensus 328 ~~g 330 (338)
T cd02933 328 KNG 330 (338)
T ss_pred hcC
Confidence 764
No 31
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.94 E-value=1.4e-25 Score=227.97 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=146.4
Q ss_pred CCCCEEEEecCC-------CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC---
Q 013813 156 EDRPLFVQFCAN-------DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--- 225 (436)
Q Consensus 156 ~e~plivQL~g~-------d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--- 225 (436)
.+.|++++|+|+ ..+++++.++.+++++|+||||++||+.. |....++++.+.+|+++|++.++
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr~~~~~~~ 209 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP------GLRDLQYGEALDELLAALKEAQAELH 209 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHhccc
Confidence 468999999987 57899999998888899999999999853 33348899999999999999987
Q ss_pred --ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc-----------cCCCCCc----cCHHHHHHHHhhC--C
Q 013813 226 --VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFR----ADWNAIKAVKNAL--R 286 (436)
Q Consensus 226 --iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-----------~~~~~g~----ad~~~i~~ik~~~--~ 286 (436)
+||+||++.+.+.++..++++.++++|+|+|++|+++.+. ..+++|+ ..|+.++++++.+ +
T Consensus 210 ~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ 289 (344)
T PRK05286 210 GYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGR 289 (344)
T ss_pred cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999987777789999999999999999999987432 1233443 3788999999998 8
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhhh
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 331 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~~ 331 (436)
+|||++|||.|.+|+.+++. .|||+|||||+++. +|++|.++..
T Consensus 290 ipIig~GGI~s~eda~e~l~-aGAd~V~v~~~~~~~gP~~~~~i~~ 334 (344)
T PRK05286 290 LPIIGVGGIDSAEDAYEKIR-AGASLVQIYSGLIYEGPGLVKEIVR 334 (344)
T ss_pred CCEEEECCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCchHHHHHHH
Confidence 99999999999999999998 59999999999976 5999998753
No 32
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.93 E-value=2.1e-25 Score=227.42 Aligned_cols=231 Identities=19% Similarity=0.180 Sum_probs=176.4
Q ss_pred CCcEEEccCC-C------CCcHHHHHHHHHh--CCCeEEeCcccchh----h-----ccChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMV-D------NSELPFRMLCRRY--GAEAAYTPMLHSRI----F-----TESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~-g------vtd~~fR~l~~~~--Ga~l~~Temisa~~----l-----~~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||. + .|+..++.+.++. |+++++||.+.... . ..++.. +...-..+..+.+
T Consensus 13 kNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~ 92 (353)
T cd02930 13 RNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGK 92 (353)
T ss_pred ccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 7899999996 2 3667777766655 68999999754321 1 011111 1111234567888
Q ss_pred EEEEecCC----------------------------------CHHHHHHHHHHH-cCCCcEEEEecC---------CCch
Q 013813 160 LFVQFCAN----------------------------------DPEILLNAARRV-EPYCDYVDINLG---------CPQR 195 (436)
Q Consensus 160 livQL~g~----------------------------------d~e~~~~AA~~v-~~g~D~IdLN~G---------CP~~ 195 (436)
+++||+.. -.++|++||+++ ++|||+||||.+ ||..
T Consensus 93 ~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~ 172 (353)
T cd02930 93 IALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRT 172 (353)
T ss_pred EEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCcc
Confidence 99998321 147888999775 569999999864 9999
Q ss_pred hhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC--------CChhhHHHHHHHHHHcCccEEEeccCccccc-
Q 013813 196 IARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK- 266 (436)
Q Consensus 196 ~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg--------~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~- 266 (436)
|.++|.||++|.++.+++.+|+++|++.++.++.|++|++ ++.++++++++.|+++|+|+|+|.....+..
T Consensus 173 N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~ 252 (353)
T cd02930 173 NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARV 252 (353)
T ss_pred CCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC
Confidence 9999999999999999999999999999977766666664 3567889999999999999999953221110
Q ss_pred ---CCCCCc-cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 267 ---DGKKFR-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 267 ---~~~~g~-ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
....+. ...+..+++++.+++||+++|+|.++++++++++.++||+||+||+++.||||+++++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~g 322 (353)
T cd02930 253 PTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAAG 322 (353)
T ss_pred ccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHhC
Confidence 011112 234567899999999999999999999999999998899999999999999999998754
No 33
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.93 E-value=3.2e-25 Score=226.22 Aligned_cols=228 Identities=16% Similarity=0.168 Sum_probs=177.9
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHHh--CCCeEEeCcccch-h--h--cc-----Chhh----hhhhhhccCCCC
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRRY--GAEAAYTPMLHSR-I--F--TE-----SEKY----RNEEFATCKEDR 158 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~~--Ga~l~~Temisa~-~--l--~~-----~~~~----~~~~~~~~~~e~ 158 (436)
+|+|+++||.. +|+..+..+.++. |+++++||.+... . . .. .... ++..-..+..+.
T Consensus 13 kNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~d~vh~~Ga 92 (361)
T cd04747 13 PNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDEVHAAGG 92 (361)
T ss_pred eCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHHHHHHhcCC
Confidence 78999999963 4777777766655 6789999976542 1 0 00 1111 111112456678
Q ss_pred CEEEEecCCC----------------------------------------HHHHHHHHHHHc-CCCcEEEEecCC-----
Q 013813 159 PLFVQFCAND----------------------------------------PEILLNAARRVE-PYCDYVDINLGC----- 192 (436)
Q Consensus 159 plivQL~g~d----------------------------------------~e~~~~AA~~v~-~g~D~IdLN~GC----- 192 (436)
.+++||+... .++|++||++++ +|||+||||++|
T Consensus 93 ~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~ 172 (361)
T cd04747 93 KIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLID 172 (361)
T ss_pred EEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHH
Confidence 8999983210 258899998764 599999999999
Q ss_pred ----CchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc----------CCChhhHHHHHHHHHHcCccEE
Q 013813 193 ----PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV----------FPNLQDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 193 ----P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl----------g~~~~d~~~~ak~le~aG~d~I 256 (436)
|..|.|+|+||++|.++.+++.+|+++|++++ +.||.||++. |.+.++..++++.+++.|+|+|
T Consensus 173 qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i 252 (361)
T cd04747 173 QFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIF 252 (361)
T ss_pred HhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999998 4899999984 2345677889999999999998
Q ss_pred EeccCcc-cccCCCCCccCHHHHHHHHhhCCCcEEEccCC------------------CCHHHHHHHHHhcCcceeeeeh
Q 013813 257 AVHGRTR-DEKDGKKFRADWNAIKAVKNALRIPVLANGNV------------------RHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 257 ~VHgRt~-~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI------------------~s~eda~~~l~~tGaDgVmIGR 317 (436)
.|..+.. .+. +. ..++.+.+.+|+.+++||+++|+| .|+++++++++.++||+|++||
T Consensus 253 ~vs~g~~~~~~--~~-~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR 329 (361)
T cd04747 253 HCSTRRFWEPE--FE-GSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGR 329 (361)
T ss_pred EecCCCccCCC--cC-ccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhH
Confidence 8866532 221 22 236788888999999999999999 6999999999998899999999
Q ss_pred HHhhCCccchhhhhh
Q 013813 318 SLLENPALFAGFRTA 332 (436)
Q Consensus 318 gal~nP~lf~~i~~~ 332 (436)
+++.||||+.+++.+
T Consensus 330 ~~iadP~~~~k~~~g 344 (361)
T cd04747 330 ALLSDPAWVAKVREG 344 (361)
T ss_pred HHHhCcHHHHHHHcC
Confidence 999999999998754
No 34
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.93 E-value=2e-25 Score=225.29 Aligned_cols=256 Identities=17% Similarity=0.144 Sum_probs=178.7
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHH--HHHHhCCCcEEEccCCCCCcHHHHHHHH
Q 013813 46 LLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWA--HWTKLGRPKLIVAPMVDNSELPFRMLCR 123 (436)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lg~~~i~lAPM~gvtd~~fR~l~~ 123 (436)
||..++.| .+-+||.+++|.+.+......++...++|+ .++++...++ |..|.-.+ |.+..
T Consensus 1 dL~v~~~G------------l~l~nPv~~ASg~~~~~~e~~~~~~~~G~Gavv~ktit~~~~---~~~gn~~p--r~~~~ 63 (325)
T cd04739 1 DLSTTYLG------------LSLKNPLVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQI---EREAQELD--RFLTY 63 (325)
T ss_pred CceEEECC------------EecCCCCEeCCcCCCCCHHHHHHHHHCCCcEEEecccchhhh---hhcCCCCC--ceEee
Confidence 46677888 899999999999998777777766666677 3344432210 01111110 11100
Q ss_pred --HhCCCeEEeCcccchhhccC--hhhhhh--hhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchh
Q 013813 124 --RYGAEAAYTPMLHSRIFTES--EKYRNE--EFATCKEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRI 196 (436)
Q Consensus 124 --~~Ga~l~~Temisa~~l~~~--~~~~~~--~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~ 196 (436)
.+.- ...|+++-.+.+. +.+... ... ...+.|+++||+|++++++.++++.++. |+|+||||++||..
T Consensus 64 ~~~~~~---~~~~in~~g~~n~g~~~~~~~i~~~~-~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~- 138 (325)
T cd04739 64 GSSFAE---ALSYFPEYGRYNLGPEEYLELIRRAK-RAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPT- 138 (325)
T ss_pred cccCcC---cccccccccccCcCHHHHHHHHHHHH-hccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-
Confidence 1100 0112333333221 111111 011 1236899999999999999999998865 89999999999642
Q ss_pred hhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccccc----------
Q 013813 197 ARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------- 266 (436)
Q Consensus 197 ~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~---------- 266 (436)
..+.+|+.+ ++.+.++++++++.+++||+||++.. ..+..++++.++++|+|+|++|+|+....
T Consensus 139 -~~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p~--~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~ 212 (325)
T cd04739 139 -DPDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSPF--FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVP 212 (325)
T ss_pred -CCCcccchH---HHHHHHHHHHHHhccCCCEEEEcCCC--ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceec
Confidence 234466544 57899999999999999999998764 45788999999999999999999873221
Q ss_pred -CCCCCc----cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 267 -DGKKFR----ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 267 -~~~~g~----ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
.+.+|+ ..|++++++++.+++|||++|||.|.+|+.+++. .|||+|||||+++. +|.++.++.
T Consensus 213 ~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~ 281 (325)
T cd04739 213 NLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLL-AGADVVMTTSALLRHGPDYIGTLL 281 (325)
T ss_pred CCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHH-cCCCeeEEehhhhhcCchHHHHHH
Confidence 112222 2467888999888999999999999999999998 59999999999988 599887664
No 35
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.93 E-value=1.5e-24 Score=222.54 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHc-CCCcEEEEecCC---------CchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC---
Q 013813 169 PEILLNAARRVE-PYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--- 235 (436)
Q Consensus 169 ~e~~~~AA~~v~-~g~D~IdLN~GC---------P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg--- 235 (436)
.++|++||+++. +|||+||||+|| |..|.|.|.||++|.++.+++.||+++|+++++.++.|++|++
T Consensus 149 i~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~ 228 (370)
T cd02929 149 RRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDE 228 (370)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHH
Confidence 368899997764 599999999998 9999999999999999999999999999999987777777764
Q ss_pred -------CChhhHHHHHHHHHHcCccEEEeccCcccc----cCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHH
Q 013813 236 -------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE----KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 236 -------~~~~d~~~~ak~le~aG~d~I~VHgRt~~~----~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~ 304 (436)
.+.++++++++.+++. +|+|.|+...... .........|++++.+|+.+++||+++|+|.++++++++
T Consensus 229 ~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~ 307 (370)
T cd02929 229 LIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEV 307 (370)
T ss_pred hcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 2356778899999876 7999887653211 011122356888899999999999999999999999999
Q ss_pred HHhcCcceeeeehHHhhCCccchhhhhhh
Q 013813 305 LEETGCEGVLSAESLLENPALFAGFRTAE 333 (436)
Q Consensus 305 l~~tGaDgVmIGRgal~nP~lf~~i~~~~ 333 (436)
++.++||+|++||+++.||||+.+++.+.
T Consensus 308 l~~g~~D~V~~gR~~ladP~l~~k~~~g~ 336 (370)
T cd02929 308 VKSGILDLIGAARPSIADPFLPKKIREGR 336 (370)
T ss_pred HHcCCCCeeeechHhhhCchHHHHHHcCC
Confidence 99988999999999999999999988653
No 36
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.92 E-value=4.6e-24 Score=237.23 Aligned_cols=228 Identities=18% Similarity=0.229 Sum_probs=173.1
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHHh--CCCeEEeCcccchhh---------ccChhh----hhhhhhccCC-CC
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRRY--GAEAAYTPMLHSRIF---------TESEKY----RNEEFATCKE-DR 158 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~~--Ga~l~~Temisa~~l---------~~~~~~----~~~~~~~~~~-e~ 158 (436)
+|+|+++||.. .|+.....+.++. |+++++||.+....- ..+... +...-..+.. +.
T Consensus 411 ~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~ 490 (765)
T PRK08255 411 KNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFVHANSDA 490 (765)
T ss_pred CCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHHHhcCCc
Confidence 78999999954 3555555554444 789999998654211 011111 1111123455 47
Q ss_pred CEEEEecC----------------------------C---------------------CHHHHHHHHHHH-cCCCcEEEE
Q 013813 159 PLFVQFCA----------------------------N---------------------DPEILLNAARRV-EPYCDYVDI 188 (436)
Q Consensus 159 plivQL~g----------------------------~---------------------d~e~~~~AA~~v-~~g~D~IdL 188 (436)
.+++||+- + -.++|++||+++ +.|||+|||
T Consensus 491 ~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgvei 570 (765)
T PRK08255 491 KIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAEAGFDWLEL 570 (765)
T ss_pred eEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 88889721 0 036888999765 569999999
Q ss_pred ecC---------CCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc------CCChhhHHHHHHHHHHc
Q 013813 189 NLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 189 N~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl------g~~~~d~~~~ak~le~a 251 (436)
|+| ||..|.++|+||++|.++.+++.+|+++|++.+ ++||+|||+. |++.++++++++.++++
T Consensus 571 h~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~ 650 (765)
T PRK08255 571 HCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAA 650 (765)
T ss_pred ecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhc
Confidence 999 999999999999999999999999999999987 4899999996 34567889999999999
Q ss_pred CccEEEecc-CcccccCC-CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc-chh
Q 013813 252 GCSLLAVHG-RTRDEKDG-KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL-FAG 328 (436)
Q Consensus 252 G~d~I~VHg-Rt~~~~~~-~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l-f~~ 328 (436)
|+|+|+||+ ++...... +.......+.+++|+.+++||+++|+|.++++++++++.++||+||+||+++.||+| +..
T Consensus 651 g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~ 730 (765)
T PRK08255 651 GADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHE 730 (765)
T ss_pred CCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHH
Confidence 999999994 44321111 111234566788999999999999999999999999999899999999999999955 444
Q ss_pred h
Q 013813 329 F 329 (436)
Q Consensus 329 i 329 (436)
+
T Consensus 731 ~ 731 (765)
T PRK08255 731 A 731 (765)
T ss_pred H
Confidence 3
No 37
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.92 E-value=1.4e-24 Score=219.80 Aligned_cols=252 Identities=15% Similarity=0.112 Sum_probs=177.4
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHHH--HHHhCCCcEEEccCCCCCcHHHH----
Q 013813 46 LLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWAH--WTKLGRPKLIVAPMVDNSELPFR---- 119 (436)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lg~~~i~lAPM~gvtd~~fR---- 119 (436)
||..++.| .+=+||++.+|.+.+......++..+++|+. .+++.. .|-.+....-||
T Consensus 2 ~l~~~~~G------------l~l~nPv~~asg~~~~~~~~~~~~~~~g~Gavv~kti~~-----~~~~~~~~~~~~~~~~ 64 (334)
T PRK07565 2 DLSTTYLG------------LTLRNPLVASASPLSESVDNVKRLEDAGAGAVVLKSLFE-----EQIRHEAAELDRHLTH 64 (334)
T ss_pred CceEEECC------------EecCCCCEecCcCCCCCHHHHHHHHHCCCeEEEEeeCCH-----HHhhcccccccccccc
Confidence 56777888 8889999999999886666666666677773 344432 222222222122
Q ss_pred ---HHHHHhCCCeEEeCcccchhhccCh--hhhhh--hhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecC
Q 013813 120 ---MLCRRYGAEAAYTPMLHSRIFTESE--KYRNE--EFATCKEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLG 191 (436)
Q Consensus 120 ---~l~~~~Ga~l~~Temisa~~l~~~~--~~~~~--~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~G 191 (436)
++.... .|+++..+.+.. ..... .+. ...+.|+++||+|.+++++.++++.++. |+|+||||++
T Consensus 65 ~~~~~~~~~-------~~~n~~gl~n~g~d~~~~~i~~~~-~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~s 136 (334)
T PRK07565 65 GTESFAEAL-------DYFPEPAKFYVGPEEYLELIRRAK-EAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIY 136 (334)
T ss_pred CCCcchhhh-------hhhhhhhccCcCHHHHHHHHHHHH-HhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 112211 134333332211 11111 111 1235899999999999999999988765 8999999999
Q ss_pred CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccccc-----
Q 013813 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----- 266 (436)
Q Consensus 192 CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~----- 266 (436)
||... .+..|.. .++.+.++++++++.+++||+||++.+ ..+..++++.++++|+|+|++|+|+....
T Consensus 137 cpp~~--~~~~g~~---~~~~~~eil~~v~~~~~iPV~vKl~p~--~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~ 209 (334)
T PRK07565 137 YLPTD--PDISGAE---VEQRYLDILRAVKSAVSIPVAVKLSPY--FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLET 209 (334)
T ss_pred CCCCC--CCCcccc---HHHHHHHHHHHHHhccCCcEEEEeCCC--chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhh
Confidence 97642 2333433 346688999999999999999998764 35678899999999999999999864321
Q ss_pred ------CCCCCc----cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhh
Q 013813 267 ------DGKKFR----ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 330 (436)
Q Consensus 267 ------~~~~g~----ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~ 330 (436)
.+.+|+ ..|+.+.++++.+++|||++|||.|.+|+.+++. .|||+|||||+++.+ |.++.++.
T Consensus 210 ~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~-aGA~~V~v~t~~~~~g~~~~~~i~ 283 (334)
T PRK07565 210 LEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLL-AGADVVMIASALLRHGPDYIGTIL 283 (334)
T ss_pred cccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHH-cCCCceeeehHHhhhCcHHHHHHH
Confidence 112232 2367788899889999999999999999999998 699999999999985 88777654
No 38
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.90 E-value=1.7e-22 Score=205.85 Aligned_cols=231 Identities=22% Similarity=0.292 Sum_probs=178.9
Q ss_pred CCcEEEccCCCC--------CcHHHHHHHHHh--CCCeEEeCcccchh----hcc-----Chh----hhhhhhhccCCCC
Q 013813 102 RPKLIVAPMVDN--------SELPFRMLCRRY--GAEAAYTPMLHSRI----FTE-----SEK----YRNEEFATCKEDR 158 (436)
Q Consensus 102 ~~~i~lAPM~gv--------td~~fR~l~~~~--Ga~l~~Temisa~~----l~~-----~~~----~~~~~~~~~~~e~ 158 (436)
+|++++|||... |+...+.+.++. |++++.||...... ... +.. .++..-..+..+.
T Consensus 18 ~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~avH~~G~ 97 (363)
T COG1902 18 KNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEAVHAHGA 97 (363)
T ss_pred ccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHHHHHhcCC
Confidence 789999999863 557777777665 58999999654321 101 111 1112123567788
Q ss_pred CEEEEecCCC----------------------------------------HHHHHHHHHHH-cCCCcEEEEec-------
Q 013813 159 PLFVQFCAND----------------------------------------PEILLNAARRV-EPYCDYVDINL------- 190 (436)
Q Consensus 159 plivQL~g~d----------------------------------------~e~~~~AA~~v-~~g~D~IdLN~------- 190 (436)
++++||+... .++|++||+++ ++|||+||||.
T Consensus 98 ~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~ 177 (363)
T COG1902 98 KIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLS 177 (363)
T ss_pred eEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHH
Confidence 9999997433 27899999876 56999999994
Q ss_pred --CCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEecc-------CCChhhHHHHHHHHHHcC-ccEEEe
Q 013813 191 --GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV-------FPNLQDTIKYAKMLEDAG-CSLLAV 258 (436)
Q Consensus 191 --GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRl-------g~~~~d~~~~ak~le~aG-~d~I~V 258 (436)
-+|..|.|+|.||+++.++.+++.||+++|+++++ .||.+++.. |++.++..++++.|++.| +|+|++
T Consensus 178 qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~v 257 (363)
T COG1902 178 QFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHV 257 (363)
T ss_pred HhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEe
Confidence 49999999999999999999999999999999995 478888765 345668899999999999 799998
Q ss_pred ccCccc--ccCCCC-CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 259 HGRTRD--EKDGKK-FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 259 HgRt~~--~~~~~~-g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
.+.... +..... ..+.......++..+++|||++|+|.+++.++++++.++||.|.+||+++.||+|..+++.+
T Consensus 258 s~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g 334 (363)
T COG1902 258 SEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEG 334 (363)
T ss_pred ecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcC
Confidence 765442 111111 12344666778888899999999999999999999986699999999999999999998864
No 39
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.89 E-value=1.1e-21 Score=200.56 Aligned_cols=226 Identities=15% Similarity=0.163 Sum_probs=172.6
Q ss_pred CCcEEEccCCC---------CCcHHHHHHHHHhCCCeEEeCcccchh----hc-----cChhh----hhhhhhccCCCCC
Q 013813 102 RPKLIVAPMVD---------NSELPFRMLCRRYGAEAAYTPMLHSRI----FT-----ESEKY----RNEEFATCKEDRP 159 (436)
Q Consensus 102 ~~~i~lAPM~g---------vtd~~fR~l~~~~Ga~l~~Temisa~~----l~-----~~~~~----~~~~~~~~~~e~p 159 (436)
+|+|++|||.. .|+..++.+.++.|+++++||.+.... .. .+.+. +...-..+..+.+
T Consensus 15 kNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~vH~~Ga~ 94 (362)
T PRK10605 15 PNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEGGH 94 (362)
T ss_pred ccccEECCcCcCccCCCCCCCCHHHHHHHHHHhCCCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHHHHhCCCE
Confidence 78999999974 155677777777799999999876421 10 11111 1111134556777
Q ss_pred EEEEecCC------------------------------------------C------------HHHHHHHHHHHc-CCCc
Q 013813 160 LFVQFCAN------------------------------------------D------------PEILLNAARRVE-PYCD 184 (436)
Q Consensus 160 livQL~g~------------------------------------------d------------~e~~~~AA~~v~-~g~D 184 (436)
+++||+.. . .++|++||+++. +|||
T Consensus 95 i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfD 174 (362)
T PRK10605 95 IAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFRQAIANAREAGFD 174 (362)
T ss_pred EEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88887321 0 367889997764 6999
Q ss_pred EEEEecC---------CCchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEecc---------CCChhh-HHHH
Q 013813 185 YVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRV---------FPNLQD-TIKY 244 (436)
Q Consensus 185 ~IdLN~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRl---------g~~~~d-~~~~ 244 (436)
+||||++ +|..|.|+|.||+++.++.+++.|||++|++.++- .|.+|+.. |.+.++ .+++
T Consensus 175 GVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~ 254 (362)
T PRK10605 175 LVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYL 254 (362)
T ss_pred EEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHH
Confidence 9999964 89999999999999999999999999999999852 47777642 235566 7999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.|++.|+|+|.|........ ......+.++||+.+++||+++|++ |++.++++++.+.||.|++||+++.||+
T Consensus 255 ~~~L~~~giD~i~vs~~~~~~~----~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd 329 (362)
T PRK10605 255 IEQLGKRGIAYLHMSEPDWAGG----EPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPD 329 (362)
T ss_pred HHHHHHcCCCEEEeccccccCC----ccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCcc
Confidence 9999999999999976422111 1233456688999999999999997 8999999999877999999999999999
Q ss_pred cchhhhhh
Q 013813 325 LFAGFRTA 332 (436)
Q Consensus 325 lf~~i~~~ 332 (436)
|..+++.+
T Consensus 330 ~~~k~~~g 337 (362)
T PRK10605 330 LVARLQRK 337 (362)
T ss_pred HHHHHhcC
Confidence 99998753
No 40
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.88 E-value=1.2e-21 Score=195.60 Aligned_cols=187 Identities=24% Similarity=0.209 Sum_probs=147.6
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
+.|+++|||.+.+ +..|++.|.++|...++++|.+. ..+. +.. ..+.|+++||++. +++.+.+
T Consensus 64 ~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~-----~~~~----i~~-~~~~~~~~ql~~~~~~~~~~~ 133 (299)
T cd02809 64 AMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT-----SLEE----VAA-AAPGPRWFQLYVPRDREITED 133 (299)
T ss_pred CCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC-----CHHH----HHH-hcCCCeEEEEeecCCHHHHHH
Confidence 4699999998875 67999999999999988887632 1111 111 1237999999987 8999999
Q ss_pred HHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 175 AARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 175 AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
+++.+++ |+|+|+||++||+...+ ...++++++++.+++||++|... ..+.++.++++|+
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~pvivK~v~------s~~~a~~a~~~G~ 194 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGPLILKGIL------TPEDALRAVDAGA 194 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCCEEEeecC------CHHHHHHHHHCCC
Confidence 9877654 89999999999984222 23467888888888999999642 2355888999999
Q ss_pred cEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 254 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 254 d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
|+|+||++...+ ...+...|..+.++++.+ ++|||++|||++..|+.++|. .|||+||+||.++
T Consensus 195 d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~-lGAd~V~ig~~~l 260 (299)
T cd02809 195 DGIVVSNHGGRQ--LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA-LGADAVLIGRPFL 260 (299)
T ss_pred CEEEEcCCCCCC--CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHHH
Confidence 999997765433 234578899999999877 599999999999999999998 5999999999443
No 41
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.88 E-value=4.6e-22 Score=202.01 Aligned_cols=231 Identities=24% Similarity=0.308 Sum_probs=163.0
Q ss_pred CCcEEEccCCC--------CCc-HHHHHHHHHh--CCCeEEeCcccchhhc---------cChhh----hhhhhhccCCC
Q 013813 102 RPKLIVAPMVD--------NSE-LPFRMLCRRY--GAEAAYTPMLHSRIFT---------ESEKY----RNEEFATCKED 157 (436)
Q Consensus 102 ~~~i~lAPM~g--------vtd-~~fR~l~~~~--Ga~l~~Temisa~~l~---------~~~~~----~~~~~~~~~~e 157 (436)
+|+|++|||.. +++ ...+.+.++. |++++.||.+....-. .+... ++..-..+..+
T Consensus 14 kNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~G 93 (341)
T PF00724_consen 14 KNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAHG 93 (341)
T ss_dssp SSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhcC
Confidence 78999999974 233 4444454433 7899999987643211 11111 11111245567
Q ss_pred CCEEEEecCCC-------------------------------------------HHHHHHHHHHH-cCCCcEEEEecC--
Q 013813 158 RPLFVQFCAND-------------------------------------------PEILLNAARRV-EPYCDYVDINLG-- 191 (436)
Q Consensus 158 ~plivQL~g~d-------------------------------------------~e~~~~AA~~v-~~g~D~IdLN~G-- 191 (436)
..+++||+... .++|++||+++ ++|||+||||++
T Consensus 94 a~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGfDGVEIH~ahG 173 (341)
T PF00724_consen 94 AKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGFDGVEIHAAHG 173 (341)
T ss_dssp SEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEESTT
T ss_pred ccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhccCeEeecccch
Confidence 78888886311 37889999776 569999999965
Q ss_pred -------CCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCC------ChhhHHHHHHHHHHcCccEE
Q 013813 192 -------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFP------NLQDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 192 -------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~------~~~d~~~~ak~le~aG~d~I 256 (436)
+|..|.|+|.||+++.++.+++.|||++|++.+ +.||.+|+.... +.++..++++.+++.|+|.+
T Consensus 174 yLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~ 253 (341)
T PF00724_consen 174 YLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFL 253 (341)
T ss_dssp SHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTE
T ss_pred hhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhc
Confidence 899999999999999999999999999999998 477888876532 34677888999999999988
Q ss_pred EeccCcc----c--c--cCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 257 AVHGRTR----D--E--KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 257 ~VHgRt~----~--~--~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
.+..... . . ...............+++.+++||+++|+|.+++.++++++.+.||.|.+||+++.||+|..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k 333 (341)
T PF00724_consen 254 DVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNK 333 (341)
T ss_dssp EEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHH
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHH
Confidence 6532111 0 0 011111234577889999999999999999999999999999889999999999999999999
Q ss_pred hhhh
Q 013813 329 FRTA 332 (436)
Q Consensus 329 i~~~ 332 (436)
++.+
T Consensus 334 ~~~g 337 (341)
T PF00724_consen 334 AREG 337 (341)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 8864
No 42
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.87 E-value=7.1e-22 Score=201.54 Aligned_cols=174 Identities=18% Similarity=0.237 Sum_probs=144.7
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecC--CCHHHHHHHHHH
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCA--NDPEILLNAARR 178 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g--~d~e~~~~AA~~ 178 (436)
+.|+++|||+++||.+||.+|+++|+ ++ |+++.+.+.. +...|+.+||+| ++++. ++|++.
T Consensus 44 ~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~----------~~~~~~~~QI~g~~~~~~~-a~aa~~ 107 (369)
T TIGR01304 44 ELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRH----------EDPDPAIAKIAEAYEEGDQ-AAATRL 107 (369)
T ss_pred CCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcC----------CCHHHHHHHHhhcCCChHH-HHHHHH
Confidence 56999999999999999999999999 66 7766654321 223456699999 67777 888888
Q ss_pred HcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 179 VEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 179 v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
+++ +++. .+|+++.++++++++.. |+||+|+++ .+..++++.++++|+|.|+
T Consensus 108 ~~e~~~~~----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~--~~~~e~a~~l~eAGad~I~ 160 (369)
T TIGR01304 108 LQELHAAP----------------------LKPELLGERIAEVRDSG---VITAVRVSP--QNAREIAPIVVKAGADLLV 160 (369)
T ss_pred HHHcCCCc----------------------cChHHHHHHHHHHHhcc---eEEEEecCC--cCHHHHHHHHHHCCCCEEE
Confidence 865 5554 37999999999999873 999999954 5778999999999999999
Q ss_pred eccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 258 VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+|||+.++.+. ++..+|..+.++++..++|||+ |+|.|.+++.++++ +|||+||+|++.-.
T Consensus 161 ihgrt~~q~~~-sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~-aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 161 IQGTLVSAEHV-STSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMR-TGAAGVIVGPGGAN 221 (369)
T ss_pred Eeccchhhhcc-CCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHH-cCCCEEEECCCCCc
Confidence 99999887652 2356899899999989999998 99999999999998 69999999987743
No 43
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.87 E-value=1e-21 Score=197.04 Aligned_cols=257 Identities=14% Similarity=0.124 Sum_probs=168.4
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCchhHhHHHHHHHH--HHhCCCcEEEccCCCCCcHHHHHHHH
Q 013813 46 LLCSDSNNHDNQQEQPEHEEPSSLPETASSSLPSPRGYLSGEARAERAWAHW--TKLGRPKLIVAPMVDNSELPFRMLCR 123 (436)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lg~~~i~lAPM~gvtd~~fR~l~~ 123 (436)
||.+++.| ..=+||..++|.+.+......++-...+|++. +++... |-.|...+ ++++
T Consensus 1 dL~~~~~G------------l~l~NPv~~AsG~~~~~~e~~~~~~~~g~Gavv~ktit~~-----p~~gn~~p---r~~~ 60 (310)
T PRK02506 1 STSTQIAG------------FKFDNCLMNAAGVYCMTKEELEEVEASAAGAFVTKSATLE-----PRPGNPEP---RYAD 60 (310)
T ss_pred CCceEECC------------EECCCCCEeCCCCCCCCHHHHHHHHHcCCcEEEeCccCCC-----CCCCCCCC---eEEE
Confidence 45666777 77889999998887644445555445556643 443322 33333322 1121
Q ss_pred HhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-C-CcEEEEecCCCchhhhcCc
Q 013813 124 RYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGN 201 (436)
Q Consensus 124 ~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g-~D~IdLN~GCP~~~~~~~~ 201 (436)
....++.+.-++...+....+.... +.....+.|+|+||.|.+++++.+.|+.++. + +|+||||++||+.. +
T Consensus 61 -~~~~~~N~~Gl~n~g~~~~~~~i~~-~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~---~- 134 (310)
T PRK02506 61 -TPLGSINSMGLPNLGFDYYLDYVLE-LQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP---G- 134 (310)
T ss_pred -CcchhhccCCCCCcCHHHHHHHHHH-HHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC---C-
Confidence 1111222222222111111111111 1222236899999999999999999998875 5 89999999999842 1
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccC-------------ccc----
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR-------------TRD---- 264 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgR-------------t~~---- 264 (436)
|..+..+++.+.++++++++.+.+||.||+....+..+..+.+..+.+.|++.|+...+ ...
T Consensus 135 -~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~ 213 (310)
T PRK02506 135 -KPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKN 213 (310)
T ss_pred -ccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCC
Confidence 44556789999999999999999999999877554444444455555667777644321 110
Q ss_pred ccCCCCCc----cCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 265 EKDGKKFR----ADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 265 ~~~~~~g~----ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
...+.+|+ ..+..+.++++.+ ++|||++|||.|.+|+.+++.. ||++||+|++++. +|.+|.++.
T Consensus 214 ~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~a-GA~~Vqv~ta~~~~gp~~~~~i~ 285 (310)
T PRK02506 214 GFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILC-GASMVQVGTALHKEGPAVFERLT 285 (310)
T ss_pred CCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHc-CCCHHhhhHHHHHhChHHHHHHH
Confidence 01122333 3467778888877 6999999999999999999986 9999999999887 799998765
No 44
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.86 E-value=1.2e-21 Score=194.79 Aligned_cols=168 Identities=23% Similarity=0.327 Sum_probs=142.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-C-CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~-g-~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
.+.+++....+...+++.+.+..++. + +|+|+||++||+.. + |..|.++++.+.++++++++.+.+||.||+-
T Consensus 95 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~----g-~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~ 169 (310)
T COG0167 95 IGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP----G-GRALGQDPELLEKLLEAVKAATKVPVFVKLA 169 (310)
T ss_pred cCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC----C-hhhhccCHHHHHHHHHHHHhcccCceEEEeC
Confidence 45679999999999999999988865 5 79999999999942 2 7788889999999999999999999999954
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcc---------------cccCCCCCc----cCHHHHHHHHhhCC--CcEEEc
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTR---------------DEKDGKKFR----ADWNAIKAVKNALR--IPVLAN 292 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~---------------~~~~~~~g~----ad~~~i~~ik~~~~--iPVian 292 (436)
++.++..++|+.++++|+|+|++..-+. .+..+.+|+ ..+++|+++++.++ +|||+.
T Consensus 170 --P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGv 247 (310)
T COG0167 170 --PNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGV 247 (310)
T ss_pred --CCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEe
Confidence 4888999999999999999998865222 112334443 36788999999976 999999
Q ss_pred cCCCCHHHHHHHHHhcCcceeeeehHHhhC-Cccchhhhh
Q 013813 293 GNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFRT 331 (436)
Q Consensus 293 GGI~s~eda~~~l~~tGaDgVmIGRgal~n-P~lf~~i~~ 331 (436)
|||.|++||.+++.. ||+.|+||++++.+ |++|.++..
T Consensus 248 GGI~s~~DA~E~i~a-GA~~vQv~Tal~~~Gp~i~~~I~~ 286 (310)
T COG0167 248 GGIETGEDALEFILA-GASAVQVGTALIYKGPGIVKEIIK 286 (310)
T ss_pred cCcCcHHHHHHHHHc-CCchheeeeeeeeeCchHHHHHHH
Confidence 999999999999997 99999999999888 999987753
No 45
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.86 E-value=1.8e-20 Score=189.97 Aligned_cols=169 Identities=19% Similarity=0.266 Sum_probs=140.5
Q ss_pred CCCCCEEEEecCC-------CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--
Q 013813 155 KEDRPLFVQFCAN-------DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-- 225 (436)
Q Consensus 155 ~~e~plivQL~g~-------d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-- 225 (436)
..+.|++|+++++ ..+++++.++.+.+++|+||||++||+.. |...+++++.+.+++++|++.++
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~~~~~~ 205 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQEQDGL 205 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHhh
Confidence 4568999999888 57999999998888899999999999852 34456889999999999998876
Q ss_pred -----ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc-----------ccCCCCCc----cCHHHHHHHHhhC
Q 013813 226 -----VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-----------EKDGKKFR----ADWNAIKAVKNAL 285 (436)
Q Consensus 226 -----iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~-----------~~~~~~g~----ad~~~i~~ik~~~ 285 (436)
+||.||+....+.++..++++.++++|+|+|++..++.+ ...+.+|+ ..+..+..+++.+
T Consensus 206 ~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~ 285 (335)
T TIGR01036 206 RRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAEL 285 (335)
T ss_pred hhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHh
Confidence 999999776666568899999999999999998765431 12233443 2467788888877
Q ss_pred --CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 286 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 286 --~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
++|||+.|||.|.+|+.+++.. |||.|++|++++. +|.++.++.
T Consensus 286 ~~~ipiig~GGI~~~~da~e~l~a-GA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 286 QGRLPIIGVGGISSAQDALEKIRA-GASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHc-CCcHHHhhHHHHHhCchHHHHHH
Confidence 6999999999999999999996 9999999999977 599998875
No 46
>PLN02411 12-oxophytodienoate reductase
Probab=99.83 E-value=2.3e-19 Score=185.39 Aligned_cols=230 Identities=13% Similarity=0.143 Sum_probs=164.2
Q ss_pred CCcEEEccCCC-------CCcHHHHHHHHHh-CCCeEEeCcccchh----hcc-----Chhh----hhhhhhccCCCCCE
Q 013813 102 RPKLIVAPMVD-------NSELPFRMLCRRY-GAEAAYTPMLHSRI----FTE-----SEKY----RNEEFATCKEDRPL 160 (436)
Q Consensus 102 ~~~i~lAPM~g-------vtd~~fR~l~~~~-Ga~l~~Temisa~~----l~~-----~~~~----~~~~~~~~~~e~pl 160 (436)
+|+|++|||.. +|+.....+.++. |.++++||.+.... +.. +.+. ++..-..+..+..+
T Consensus 24 kNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avH~~G~~i 103 (391)
T PLN02411 24 SHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAVHAKGSII 103 (391)
T ss_pred cccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 78999999964 3666666666554 45999999865421 111 1111 11111344566677
Q ss_pred EEEecC----------------------------------------CC------------HHHHHHHHHHH-cCCCcEEE
Q 013813 161 FVQFCA----------------------------------------ND------------PEILLNAARRV-EPYCDYVD 187 (436)
Q Consensus 161 ivQL~g----------------------------------------~d------------~e~~~~AA~~v-~~g~D~Id 187 (436)
++||+. .. .++|++||+++ ++|||+||
T Consensus 104 ~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDGVE 183 (391)
T PLN02411 104 FCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQAALNAIRAGFDGIE 183 (391)
T ss_pred EEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 777631 01 36889999776 56999999
Q ss_pred EecC---------CCchhhhcCcccccccCChHHHHHHHHHHhcccCc-cEEEEeccCC---------ChhhHHHHHHHH
Q 013813 188 INLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVFP---------NLQDTIKYAKML 248 (436)
Q Consensus 188 LN~G---------CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i-PVsVKiRlg~---------~~~d~~~~ak~l 248 (436)
||++ +|..|.|+|.||+++.++.+++.||+++|+++++- .|.||+.... ..++..++++.+
T Consensus 184 IH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l 263 (391)
T PLN02411 184 IHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERL 263 (391)
T ss_pred EccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHH
Confidence 9964 89999999999999999999999999999999853 4677765311 124466778887
Q ss_pred HHc------CccEEEeccCccccc---CC-CCC-ccC-HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 249 EDA------GCSLLAVHGRTRDEK---DG-KKF-RAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 249 e~a------G~d~I~VHgRt~~~~---~~-~~g-~ad-~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++. |+|+|.|........ .. ..+ ... ..+.+.+|+.+++||+++|+| +.++++++++.+.||.|.+|
T Consensus 264 ~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~g 342 (391)
T PLN02411 264 NKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQGDADLVSYG 342 (391)
T ss_pred HHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcCCCCEEEEC
Confidence 763 599999975432110 00 001 111 245688999999999999999 57999999998679999999
Q ss_pred hHHhhCCccchhhhhh
Q 013813 317 ESLLENPALFAGFRTA 332 (436)
Q Consensus 317 Rgal~nP~lf~~i~~~ 332 (436)
|+++.||+|..+++.+
T Consensus 343 R~~iadPdl~~k~~~g 358 (391)
T PLN02411 343 RLFISNPDLVLRFKLN 358 (391)
T ss_pred HHHHhCccHHHHHhcC
Confidence 9999999999998764
No 47
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.81 E-value=1.5e-20 Score=187.26 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=132.9
Q ss_pred CCCEEEEecCCC---HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 157 DRPLFVQFCAND---PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d---~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
..|+++++.|.+ .+++.+.++.+++++|+||||++||+.. .+..+.++++...++++.+++..++||.||+.
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~ 170 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAVDIPVFVKLS 170 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhccCCCEEEEec
Confidence 679999999999 9999999998889999999999999853 34566778999999999999988999999976
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCccc----------c-----cCCCCCc----cCHHHHHHHHhhCC--CcEEEc
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD----------E-----KDGKKFR----ADWNAIKAVKNALR--IPVLAN 292 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~----------~-----~~~~~g~----ad~~~i~~ik~~~~--iPVian 292 (436)
...+.......+..+.+.|+++|++..++.. . ..+.+|+ ..+..++++++.++ +|||++
T Consensus 171 p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~ 250 (295)
T PF01180_consen 171 PNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGV 250 (295)
T ss_dssp STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred CCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEe
Confidence 6444444456677777999999985433210 1 1112333 35677889999887 999999
Q ss_pred cCCCCHHHHHHHHHhcCcceeeeehHH-hhCCccchhhhh
Q 013813 293 GNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 331 (436)
Q Consensus 293 GGI~s~eda~~~l~~tGaDgVmIGRga-l~nP~lf~~i~~ 331 (436)
|||.|++|+.+++.. ||+.|++++++ +.+|+++.++..
T Consensus 251 GGI~s~~da~e~l~a-GA~~Vqv~Sal~~~Gp~~~~~i~~ 289 (295)
T PF01180_consen 251 GGIHSGEDAIEFLMA-GASAVQVCSALIYRGPGVIRRINR 289 (295)
T ss_dssp SS--SHHHHHHHHHH-TESEEEESHHHHHHGTTHHHHHHH
T ss_pred CCcCCHHHHHHHHHh-CCCHheechhhhhcCcHHHHHHHH
Confidence 999999999999997 99999999999 779999998764
No 48
>PLN02826 dihydroorotate dehydrogenase
Probab=99.78 E-value=3.8e-18 Score=176.58 Aligned_cols=166 Identities=22% Similarity=0.245 Sum_probs=136.1
Q ss_pred CCEEEEecCC-----CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc---------
Q 013813 158 RPLFVQFCAN-----DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--------- 223 (436)
Q Consensus 158 ~plivQL~g~-----d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~--------- 223 (436)
.|++|+|+++ ..++|.+.++.+.+++|+|+||.+||+.. |-..+++++.+.++++++++.
T Consensus 187 ~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~ 260 (409)
T PLN02826 187 GILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP------GLRKLQGRKQLKDLLKKVLAARDEMQWGEE 260 (409)
T ss_pred ceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC------CcccccChHHHHHHHHHHHHHHHHhhhccc
Confidence 4899999888 58999999999988899999999999962 334467889999999988643
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc------------ccCCCCCcc----CHHHHHHHHhhC--
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------EKDGKKFRA----DWNAIKAVKNAL-- 285 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~------------~~~~~~g~a----d~~~i~~ik~~~-- 285 (436)
..+||.||+....+.++..++++.+.++|+|+|++...+.. +..+.+|++ .++.++++++.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 46899999766556668899999999999999999764421 122344443 467888898887
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh-CCccchhhh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 330 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~-nP~lf~~i~ 330 (436)
++|||+.|||.|.+|+.+++.. ||+.|+++++++. .|+++.++.
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~A-GAs~VQv~Ta~~~~Gp~~i~~I~ 385 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRA-GASLVQLYTAFAYEGPALIPRIK 385 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHh-CCCeeeecHHHHhcCHHHHHHHH
Confidence 7999999999999999999997 9999999999877 588887664
No 49
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.78 E-value=8.7e-18 Score=170.28 Aligned_cols=207 Identities=23% Similarity=0.278 Sum_probs=147.3
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhh--hhhhccCCCCCEEEEecCC-----C
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRN--EEFATCKEDRPLFVQFCAN-----D 168 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~--~~~~~~~~e~plivQL~g~-----d 168 (436)
+.|+++|||+|.+ +..+-..|+++|....+... +....+..... ..++....+.|++++|++. +
T Consensus 53 ~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~---~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~ 129 (333)
T TIGR02151 53 KAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQ---RAALKDPETADTFEVVREEAPNGPLIANIGAPQLVEGG 129 (333)
T ss_pred cCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCc---hhhccChhhHhHHHHHHHhCCCCcEEeecCchhhcccc
Confidence 6699999999999 55555589999987766542 11122222211 1233335789999988763 3
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHH
Q 013813 169 PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML 248 (436)
Q Consensus 169 ~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~l 248 (436)
++++.++++.+ ++|+++||++|++......++. +.+.+.+.++++++.+++||.||.. |. ....+.++.+
T Consensus 130 ~~~~~~~i~~i--~adal~i~ln~~q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPVivK~~-g~--g~~~~~a~~L 199 (333)
T TIGR02151 130 PEEAQEAIDMI--EADALAIHLNVLQELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIVKEV-GF--GISKEVAKLL 199 (333)
T ss_pred HHHHHHHHHHh--cCCCEEEcCcccccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEEEec-CC--CCCHHHHHHH
Confidence 45566666655 5789999999999766555443 2355778899999988999999964 32 2356889999
Q ss_pred HHcCccEEEeccCccccc---------CC--CCCccCH-----HHHHHHHh-hCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 249 EDAGCSLLAVHGRTRDEK---------DG--KKFRADW-----NAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~---------~~--~~g~ad~-----~~i~~ik~-~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+++|+|+|+|+|+..... .. .....+| +.+.++++ .+++|||++|||.+..|+.++|.. |||
T Consensus 200 ~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLal-GAd 278 (333)
T TIGR02151 200 ADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIAL-GAD 278 (333)
T ss_pred HHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHh-CCC
Confidence 999999999998743210 00 0112345 45666666 568999999999999999999996 899
Q ss_pred eeeeehHHhhC
Q 013813 312 GVLSAESLLEN 322 (436)
Q Consensus 312 gVmIGRgal~n 322 (436)
+|++||++|..
T Consensus 279 ~V~igr~~L~~ 289 (333)
T TIGR02151 279 AVGMARPFLKA 289 (333)
T ss_pred eehhhHHHHHH
Confidence 99999998853
No 50
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.77 E-value=2.9e-17 Score=167.60 Aligned_cols=206 Identities=19% Similarity=0.211 Sum_probs=148.1
Q ss_pred CCcEEEccCCCCCcHHHHH------HHHHhCCCeEEeCcccchhhccChhhhh--hhhhccCCCCCEEEEecCC-----C
Q 013813 102 RPKLIVAPMVDNSELPFRM------LCRRYGAEAAYTPMLHSRIFTESEKYRN--EEFATCKEDRPLFVQFCAN-----D 168 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~------l~~~~Ga~l~~Temisa~~l~~~~~~~~--~~~~~~~~e~plivQL~g~-----d 168 (436)
+.|+++|||+|.+...++. .|+++|....+..+- ....+..... ..++...++.|++++|++. +
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~---~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~ 136 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQR---AALKDPELADSFSVVRKVAPDGLLFANLGAVQLYGYG 136 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccH---hhccChhhHHHHHHHHHHCCCceEEeecCccccCCCC
Confidence 5699999999999855544 888888887777662 1112222111 1123334589999977664 4
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHH
Q 013813 169 PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML 248 (436)
Q Consensus 169 ~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~l 248 (436)
++.+.++++.+ ++|+++||++|++......++ .+.+.+.+.++++++.+++||.||..- . ..+.+.|+.+
T Consensus 137 ~~~~~~~~~~~--~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g-~--g~s~~~a~~l 206 (352)
T PRK05437 137 VEEAQRAVEMI--EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKEVG-F--GISKETAKRL 206 (352)
T ss_pred HHHHHHHHHhc--CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEeCC-C--CCcHHHHHHH
Confidence 57777777666 579999999999875554432 355667789999999999999999763 2 2335788999
Q ss_pred HHcCccEEEeccCcccc-------cC----CCCCccC-----HHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 249 EDAGCSLLAVHGRTRDE-------KD----GKKFRAD-----WNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~-------~~----~~~g~ad-----~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+++|+|+|+|+|+.... +. ......+ ...+.++++. .++|||++|||.+..|+.+++.. |||
T Consensus 207 ~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~-GAd 285 (352)
T PRK05437 207 ADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALAL-GAD 285 (352)
T ss_pred HHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHc-CCC
Confidence 99999999998864210 10 0001122 3467777777 58999999999999999999997 999
Q ss_pred eeeeehHHhh
Q 013813 312 GVLSAESLLE 321 (436)
Q Consensus 312 gVmIGRgal~ 321 (436)
+|++||++|.
T Consensus 286 ~v~ig~~~l~ 295 (352)
T PRK05437 286 AVGMAGPFLK 295 (352)
T ss_pred EEEEhHHHHH
Confidence 9999999986
No 51
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.71 E-value=7.3e-16 Score=155.85 Aligned_cols=207 Identities=23% Similarity=0.286 Sum_probs=141.9
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccCh-hhhhhhhhccCCCCCEEEEecCC-----CH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESE-KYRNEEFATCKEDRPLFVQFCAN-----DP 169 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~-~~~~~~~~~~~~e~plivQL~g~-----d~ 169 (436)
+.||++|||.|.+ +..+-..+++.|.....-.. ++ .+...+ ......++...++.|++++++.. ++
T Consensus 52 ~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~-~~-~~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~ 129 (326)
T cd02811 52 SAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQ-RA-ALEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGV 129 (326)
T ss_pred cCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCc-hh-hccChhhhhHHHHHHHhCCCceEEeecCccccCCCCH
Confidence 6799999999998 67777777777743322211 11 111100 01111223345678988888764 56
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE 249 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le 249 (436)
+.+.++++.+ ++|+++||++|++......++ .+.+.+.+.++.+++.+++||.||..-. ..+.+.++.++
T Consensus 130 ~~~~~~i~~~--~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vPVivK~~g~---g~s~~~a~~l~ 199 (326)
T cd02811 130 EEARRAVEMI--EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVPVIVKEVGF---GISRETAKRLA 199 (326)
T ss_pred HHHHHHHHhc--CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCCEEEEecCC---CCCHHHHHHHH
Confidence 7777776666 579999999998864444432 3455677888999998999999997432 23357789999
Q ss_pred HcCccEEEeccCcccc-------cCCC------CCccCH-----HHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 250 DAGCSLLAVHGRTRDE-------KDGK------KFRADW-----NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~-------~~~~------~g~ad~-----~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGa 310 (436)
++|+|+|+|+|+-... +... ....+| ..+.++++.+ ++|||++|||++..|+.+++.. ||
T Consensus 200 ~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~l-GA 278 (326)
T cd02811 200 DAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKALAL-GA 278 (326)
T ss_pred HcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHh-CC
Confidence 9999999998751100 0000 001233 4567777776 8999999999999999999997 89
Q ss_pred ceeeeehHHhh
Q 013813 311 EGVLSAESLLE 321 (436)
Q Consensus 311 DgVmIGRgal~ 321 (436)
|+|++||++|.
T Consensus 279 d~V~i~~~~L~ 289 (326)
T cd02811 279 DLVGMAGPFLK 289 (326)
T ss_pred CEEEEcHHHHH
Confidence 99999999874
No 52
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.69 E-value=9.4e-16 Score=147.19 Aligned_cols=190 Identities=20% Similarity=0.260 Sum_probs=135.1
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCH-HHHHHHHHH-
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDP-EILLNAARR- 178 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~-e~~~~AA~~- 178 (436)
+.|+++|||.|+|+..|+..+.++|+ +++.+++++...+.+..+..... .+.|+.++++.+++ +...+-++.
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~-----~~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRAL-----TDKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHh-----cCCCeEEeEecCCCCcCHHHHHHHH
Confidence 46899999999999999999999986 77778888765543322211111 14688899999874 233344433
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V 258 (436)
.+.|+|+|.||.+++. ++++.+++ .++++.+++. + .+.++.+.+.|+|+|.+
T Consensus 77 ~~~g~d~v~l~~~~~~--------------------~~~~~~~~-~~i~~i~~v~---~----~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 77 LEEGVPVVSFSFGPPA--------------------EVVERLKA-AGIKVIPTVT---S----VEEARKAEAAGADALVA 128 (236)
T ss_pred HhCCCCEEEEcCCCCH--------------------HHHHHHHH-cCCEEEEeCC---C----HHHHHHHHHcCCCEEEE
Confidence 4568999999876332 22333332 3678777742 1 24466677899999999
Q ss_pred ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 259 HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 259 HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+++.............++.++++++.+++||+++|||.+++++.++++. |+|+|++|++++..+..
T Consensus 129 ~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~-GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 129 QGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALAL-GADGVQMGTRFLATEES 194 (236)
T ss_pred eCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHc-CCcEEEEchhhhcCccc
Confidence 8874322111111245889999999889999999999999999999984 99999999999887754
No 53
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.69 E-value=1.5e-16 Score=162.82 Aligned_cols=169 Identities=17% Similarity=0.240 Sum_probs=131.2
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
+.|+++|||.++|+.+||..+.++|+ +++..+-+. .......++..||++.++ .++++.++
T Consensus 47 ~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~---------------~~~~~~e~l~~qi~~~~~---~~~~~~~~ 108 (368)
T PRK08649 47 EIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLW---------------TRYEDPEPILDEIASLGK---DEATRLMQ 108 (368)
T ss_pred cCcEeccCCcccCCHHHHHHHHhCCCceEEeecccc---------------ccCCCHHHHHHHHHhcCc---HHHHHHHH
Confidence 56999999999999999999999998 777744442 111223456667777766 34444444
Q ss_pred C-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 181 P-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 181 ~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
. +.+ | .+|+++.++++++++. + |+||+|+. ..+..++++.+.++|+|.|++|
T Consensus 109 ~~~~~--------P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~~--~~~~~e~a~~l~eaGvd~I~vh 161 (368)
T PRK08649 109 ELYAE--------P--------------IKPELITERIAEIRDA-G--VIVAVSLS--PQRAQELAPTVVEAGVDLFVIQ 161 (368)
T ss_pred HhhcC--------C--------------CCHHHHHHHHHHHHhC-e--EEEEEecC--CcCHHHHHHHHHHCCCCEEEEe
Confidence 3 222 2 4699999999999986 3 66677673 3567789999999999999999
Q ss_pred cCcccccCCCCCcc-CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 260 GRTRDEKDGKKFRA-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 260 gRt~~~~~~~~g~a-d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
+||.++.+.. .. +|..+.++++..++|||+ |+|.|.++++++++ .|||+||+|+|-
T Consensus 162 grt~~~~h~~--~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~-aGAD~V~VG~G~ 218 (368)
T PRK08649 162 GTVVSAEHVS--KEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMR-TGAAGVLVGIGP 218 (368)
T ss_pred ccchhhhccC--CcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHH-cCCCEEEECCCC
Confidence 9999876543 33 788888888888999999 99999999999998 699999999874
No 54
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.65 E-value=1.1e-14 Score=133.18 Aligned_cols=193 Identities=19% Similarity=0.187 Sum_probs=135.3
Q ss_pred EEEccCCCCC---cHHHHHHHHHhCCCeEEeCcccchhhccChhh-hhhhhhccCCCCCEEEEecCCCHHHHHHH-HHH-
Q 013813 105 LIVAPMVDNS---ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKY-RNEEFATCKEDRPLFVQFCANDPEILLNA-ARR- 178 (436)
Q Consensus 105 i~lAPM~gvt---d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~-~~~~~~~~~~e~plivQL~g~d~e~~~~A-A~~- 178 (436)
+++++|.+-. ...+.+.+.+.|++++.++............. ..........+.|+++|++.+++.+.... ++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 4678899875 33444455566888887777654432221111 00111223457899999999988776542 333
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
.+.|+|+|+||.+|+.. ++...++++++++.+ ++++.+|++........ .+.+.|+++|.
T Consensus 81 ~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-----~~~~~g~d~i~ 141 (200)
T cd04722 81 RAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAAA-----AAEEAGVDEVG 141 (200)
T ss_pred HHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-----hHHHcCCCEEE
Confidence 45699999999999864 788899999999887 89999998875432221 16789999999
Q ss_pred eccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 258 VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
++++...+............+..+++..++||+++|||.+++++.++++. |||+|++||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~-Gad~v~vgs 200 (200)
T cd04722 142 LGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALAL-GADGVIVGS 200 (200)
T ss_pred EcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHh-CCCEEEecC
Confidence 99887654322111111244566667789999999999999999999997 999999997
No 55
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.64 E-value=1.8e-15 Score=146.75 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=118.5
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccE---EEEeccC
Q 013813 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPV---SCKIRVF 235 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPV---sVKiRlg 235 (436)
-+|++|. ...+.++.+++..|++.+ ..|++++++|+++.++++.+.+.+ ++++ .+|++ |
T Consensus 77 pv~vgGG-irs~edv~~~l~~Ga~kv--------------viGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-G 140 (241)
T PRK14024 77 KVELSGG-IRDDESLEAALATGCARV--------------NIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-G 140 (241)
T ss_pred CEEEcCC-CCCHHHHHHHHHCCCCEE--------------EECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-C
Confidence 3676653 333445555566677643 257899999999999999987665 3455 56653 6
Q ss_pred CC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH--hcCcc
Q 013813 236 PN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE--ETGCE 311 (436)
Q Consensus 236 ~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~--~tGaD 311 (436)
|. ..+..++++.+++.|++.|++|+|++++++. | +||+.++++++.+++|||+||||.|.+|+.++++ .+|||
T Consensus 141 w~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~--G-~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~Gvd 217 (241)
T PRK14024 141 WTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLT--G-PNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVE 217 (241)
T ss_pred eeecCccHHHHHHHHHhcCCCEEEEEeecCCCCcc--C-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCcc
Confidence 53 3466899999999999999999999997643 3 5999999999999999999999999999999864 36999
Q ss_pred eeeeehHHhhCCccchhh
Q 013813 312 GVLSAESLLENPALFAGF 329 (436)
Q Consensus 312 gVmIGRgal~nP~lf~~i 329 (436)
|||+||+++.++--+.++
T Consensus 218 gV~igra~~~g~~~~~~~ 235 (241)
T PRK14024 218 GAIVGKALYAGAFTLPEA 235 (241)
T ss_pred EEEEeHHHHcCCCCHHHH
Confidence 999999999988655543
No 56
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.63 E-value=1.5e-15 Score=148.52 Aligned_cols=140 Identities=22% Similarity=0.322 Sum_probs=105.7
Q ss_pred HHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHc
Q 013813 173 LNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 173 ~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~a 251 (436)
.++|+++++ |++.|.+|.|||+..+.+| |.++|++|+.+. ++++.+++||+.|+|.|. ..-++.|+++
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-----~~Ea~~L~~~ 95 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH-----FVEAQILEAL 95 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-----HHHHHHHHHc
Confidence 456777766 8999999999999988777 999999999988 556667999999999863 2224445555
Q ss_pred CccEEEe---------------------------------------------c--------------------------c
Q 013813 252 GCSLLAV---------------------------------------------H--------------------------G 260 (436)
Q Consensus 252 G~d~I~V---------------------------------------------H--------------------------g 260 (436)
|+|.|.- + |
T Consensus 96 GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~g 175 (293)
T PRK04180 96 GVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTS 175 (293)
T ss_pred CCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 5555532 1 1
Q ss_pred CcccccCC--CCCccCHHHHHHHHhhCCCcEE--EccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 261 RTRDEKDG--KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 261 Rt~~~~~~--~~g~ad~~~i~~ik~~~~iPVi--anGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.|.+.... ....++|+.++++++..++||+ +.|||.|++++..+++. |||+|++|++++..+.
T Consensus 176 yt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~-GAdgVaVGSaI~ks~d 242 (293)
T PRK04180 176 MSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQL-GADGVFVGSGIFKSGD 242 (293)
T ss_pred CCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHh-CCCEEEEcHHhhcCCC
Confidence 11111000 1124689999999999999998 99999999999999985 9999999999985443
No 57
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.63 E-value=1.2e-14 Score=145.83 Aligned_cols=192 Identities=18% Similarity=0.179 Sum_probs=136.5
Q ss_pred HHhC-CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 98 TKLG-RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 98 ~~lg-~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
+.+| +.||++|||.++|+..|-..+.+.|+ +.+-....+...+...... ++. ..++|+.++++...+..-...
T Consensus 6 ~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~----~~~-~t~~pfgvn~~~~~~~~~~~~ 80 (307)
T TIGR03151 6 DLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRK----VKE-LTDKPFGVNIMLLSPFVDELV 80 (307)
T ss_pred HHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHH----HHH-hcCCCcEEeeecCCCCHHHHH
Confidence 4455 68999999999999999888888876 4333333332222211111 111 236899999987655432222
Q ss_pred HHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 176 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 176 A~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
...++.+++.|.+++|.|. ++++.+++. ++.|...+. ..+.++.++++|+|.
T Consensus 81 ~~~~~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v~-------s~~~a~~a~~~GaD~ 132 (307)
T TIGR03151 81 DLVIEEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVVA-------SVALAKRMEKAGADA 132 (307)
T ss_pred HHHHhCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEcC-------CHHHHHHHHHcCCCE
Confidence 2345678999998776552 355666554 677776642 245688899999999
Q ss_pred EEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 256 LAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 256 I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
|++||+...+..+ ...+|.++.++++.+++|||++|||.+.+++.+++. .|||+|++|+.++.-++-
T Consensus 133 Ivv~g~eagGh~g--~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~-~GA~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 133 VIAEGMESGGHIG--ELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFA-LGAEAVQMGTRFLCAKEC 199 (307)
T ss_pred EEEECcccCCCCC--CCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-cCCCEeecchHHhccccc
Confidence 9999996654322 134799999999999999999999999999999998 599999999998876654
No 58
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.60 E-value=9.9e-15 Score=143.02 Aligned_cols=143 Identities=20% Similarity=0.278 Sum_probs=117.7
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC------
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF------ 235 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg------ 235 (436)
+|+.| +...+.++.+++..|++.|.|| ++++.+|+++.++++.+.+. .+++++++|.+
T Consensus 77 v~~gG-Gi~s~~d~~~l~~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~ 140 (258)
T PRK01033 77 LCYGG-GIKTLEQAKKIFSLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFD 140 (258)
T ss_pred EEECC-CCCCHHHHHHHHHCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEE
Confidence 56655 6666667777777799999988 45678999999999988533 26778887765
Q ss_pred -----C---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 236 -----P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 236 -----~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
| ...+..++++.+++.|++.|++|++++++.+. | +||+.++++++.+++|||++|||.|.+|+.++++.
T Consensus 141 v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~--G-~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~ 217 (258)
T PRK01033 141 VYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMK--G-YDLELLKSFRNALKIPLIALGGAGSLDDIVEAILN 217 (258)
T ss_pred EEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcC--C-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 1 22357889999999999999999999987654 2 59999999999999999999999999999999976
Q ss_pred cCcceeeeehHHhhCC
Q 013813 308 TGCEGVLSAESLLENP 323 (436)
Q Consensus 308 tGaDgVmIGRgal~nP 323 (436)
+|||||++|+++...-
T Consensus 218 ~GvdgVivg~a~~~~~ 233 (258)
T PRK01033 218 LGADAAAAGSLFVFKG 233 (258)
T ss_pred CCCCEEEEcceeeeCc
Confidence 7999999999887653
No 59
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.57 E-value=1.2e-13 Score=139.63 Aligned_cols=193 Identities=22% Similarity=0.185 Sum_probs=137.5
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
+.||+.|||.++|+..|...+.+.|. +++..+|.. ..+. ..++.. .+...+.+..+.+++....+..+++
T Consensus 34 ~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~~-------~~i~~v-k~~l~v~~~~~~~~~~~~~~~~l~e 104 (325)
T cd00381 34 NIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQA-------EEVRKV-KGRLLVGAAVGTREDDKERAEALVE 104 (325)
T ss_pred CCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHHH-------HHHHHh-ccCceEEEecCCChhHHHHHHHHHh
Confidence 56999999999999999998888887 676666532 1111 111111 1345566777778888887778888
Q ss_pred CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 181 PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 181 ~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
.|+|.|+||+.. | +++.+.++++.+++... +||.+. + -.+.+.++.+.++|+|+|.|+
T Consensus 105 agv~~I~vd~~~----------G-----~~~~~~~~i~~ik~~~p~v~Vi~G-----~-v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 105 AGVDVIVIDSAH----------G-----HSVYVIEMIKFIKKKYPNVDVIAG-----N-VVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred cCCCEEEEECCC----------C-----CcHHHHHHHHHHHHHCCCceEEEC-----C-CCCHHHHHHHHhcCCCEEEEC
Confidence 999999999732 2 22567788888887653 555552 1 133456788889999999986
Q ss_pred cCccc---c-cCCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 260 GRTRD---E-KDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 260 gRt~~---~-~~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
..... . ...+.+.++|..+..+.+.. ++|||++|||.+..|+.+++.. |||+||+|+.+..-.+-
T Consensus 164 ~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~-GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 164 IGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAA-GADAVMLGSLLAGTDES 235 (325)
T ss_pred CCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHc-CCCEEEecchhcccccC
Confidence 33211 0 11223456788888777654 6999999999999999999985 99999999999876653
No 60
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.54 E-value=8e-14 Score=134.98 Aligned_cols=151 Identities=26% Similarity=0.322 Sum_probs=114.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccEEEEecc-
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIRV- 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPVsVKiRl- 234 (436)
+.|+++ .| .......+.+.++.|+|+|.+| +.++.+|+.+.++++.+.+ .+-+++.+|.|.
T Consensus 71 ~~pv~~--~G-GI~s~~d~~~~l~~G~~~v~ig--------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~ 133 (243)
T cd04731 71 FIPLTV--GG-GIRSLEDARRLLRAGADKVSIN--------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGD 133 (243)
T ss_pred CCCEEE--eC-CCCCHHHHHHHHHcCCceEEEC--------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCC
Confidence 356554 33 2233344444455689998877 4566789999999998853 455566555443
Q ss_pred ---------CC--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHH
Q 013813 235 ---------FP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 303 (436)
Q Consensus 235 ---------g~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~ 303 (436)
++ +..++.++++.+++.|+++|++|+++..+... .++|+.++++++.+++||+++|||++++|+.+
T Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~---g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~ 210 (243)
T cd04731 134 GGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKK---GYDLELIRAVSSAVNIPVIASGGAGKPEHFVE 210 (243)
T ss_pred CceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCC---CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHH
Confidence 32 24567889999999999999999998764322 46899999999999999999999999999999
Q ss_pred HHHhcCcceeeeehHHhhCCccch
Q 013813 304 CLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
+++.+|||+||+||+++..-.-+.
T Consensus 211 ~l~~~g~dgv~vg~al~~~~~~~~ 234 (243)
T cd04731 211 AFEEGGADAALAASIFHFGEYTIA 234 (243)
T ss_pred HHHhCCCCEEEEeHHHHcCCCCHH
Confidence 999889999999999887544333
No 61
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.53 E-value=9.9e-14 Score=133.44 Aligned_cols=142 Identities=24% Similarity=0.311 Sum_probs=113.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF- 235 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg- 235 (436)
+.|+ |+ |+++..+.++.++++.|++.|.+| +.++.+|+++.++++...+. .+++++++|.+
T Consensus 74 ~~pv--~~-~ggi~~~~d~~~~~~~G~~~vilg--------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~ 135 (232)
T TIGR03572 74 FMPL--TV-GGGIRSLEDAKKLLSLGADKVSIN--------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKKEL 135 (232)
T ss_pred CCCE--EE-ECCCCCHHHHHHHHHcCCCEEEEC--------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCC
Confidence 3555 44 556666666666667799999877 56788999999999887433 26778777663
Q ss_pred -----------C---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHH
Q 013813 236 -----------P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 301 (436)
Q Consensus 236 -----------~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda 301 (436)
| ...++.++++.+++.|++.|++|+++..+... .++|+.++++++.+++||+++|||++.+|+
T Consensus 136 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~---g~~~~~~~~i~~~~~ipvia~GGi~s~~di 212 (232)
T TIGR03572 136 DGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMK---GYDLELIKTVSDAVSIPVIALGGAGSLDDL 212 (232)
T ss_pred CCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcC---CCCHHHHHHHHhhCCCCEEEECCCCCHHHH
Confidence 1 13457899999999999999999988765432 368999999999999999999999999999
Q ss_pred HHHHHhcCcceeeeehHH
Q 013813 302 QKCLEETGCEGVLSAESL 319 (436)
Q Consensus 302 ~~~l~~tGaDgVmIGRga 319 (436)
.+++..+|||+|++|+++
T Consensus 213 ~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 213 VEVALEAGASAVAAASLF 230 (232)
T ss_pred HHHHHHcCCCEEEEehhh
Confidence 997777899999999986
No 62
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.51 E-value=1.7e-13 Score=131.47 Aligned_cols=143 Identities=23% Similarity=0.230 Sum_probs=110.7
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec----cCC-
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR----VFP- 236 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR----lg~- 236 (436)
+|+ |.....+.++.++++.|+|.|- .|++++.+++.+.++++.+.+.+-+++.+|.+ .++
T Consensus 77 v~~-~GGI~~~ed~~~~~~~Ga~~vi--------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~ 141 (233)
T PRK00748 77 VQV-GGGIRSLETVEALLDAGVSRVI--------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWL 141 (233)
T ss_pred EEE-cCCcCCHHHHHHHHHcCCCEEE--------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCe
Confidence 444 3344445555555666888763 46778889999999999886654444444321 133
Q ss_pred --ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 237 --NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 237 --~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+..+..++++.+++.|++.|++|+++++++.. | +||+.++++++.+++|||++|||.|.+|++++++.+||||||
T Consensus 142 ~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~--G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 142 ETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLS--G-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVI 218 (233)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcC--C-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEE
Confidence 23466889999999999999999999886543 3 799999999999999999999999999999999986699999
Q ss_pred eehHHhhC
Q 013813 315 SAESLLEN 322 (436)
Q Consensus 315 IGRgal~n 322 (436)
+||+++..
T Consensus 219 vg~a~~~~ 226 (233)
T PRK00748 219 VGRALYEG 226 (233)
T ss_pred EEHHHHcC
Confidence 99999875
No 63
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.49 E-value=2.6e-13 Score=130.20 Aligned_cols=147 Identities=22% Similarity=0.256 Sum_probs=113.2
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-----
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 234 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl----- 234 (436)
+-+|+.|. .....++.++++.|+|.|- .|+.++.+|+++.++.+.+.+. .+.+++++|.
T Consensus 74 ~pv~~~Gg-I~~~e~~~~~~~~Gad~vv--------------igs~~l~dp~~~~~i~~~~g~~-~i~~sid~~~~~~~~ 137 (234)
T cd04732 74 IPVQVGGG-IRSLEDIERLLDLGVSRVI--------------IGTAAVKNPELVKELLKEYGGE-RIVVGLDAKDGKVAT 137 (234)
T ss_pred CCEEEeCC-cCCHHHHHHHHHcCCCEEE--------------ECchHHhChHHHHHHHHHcCCc-eEEEEEEeeCCEEEE
Confidence 33666554 4445556666678899874 4567788999999999987541 2333333332
Q ss_pred -CC---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 235 -FP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 235 -g~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGa 310 (436)
++ ...+..++++.+++.|++.|++|++++.+.. . .++|+.++++++.+++||+++|||.+.+|+.++++. ||
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~--~-g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~-Ga 213 (234)
T cd04732 138 KGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTL--S-GPNFELYKELAAATGIPVIASGGVSSLDDIKALKEL-GV 213 (234)
T ss_pred CCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCcc--C-CCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHC-CC
Confidence 22 2346788999999999999999999887653 2 389999999999999999999999999999999985 99
Q ss_pred ceeeeehHHhhCCccc
Q 013813 311 EGVLSAESLLENPALF 326 (436)
Q Consensus 311 DgVmIGRgal~nP~lf 326 (436)
|+||+||+++.++--+
T Consensus 214 ~gv~vg~~~~~~~~~~ 229 (234)
T cd04732 214 AGVIVGKALYEGKITL 229 (234)
T ss_pred CEEEEeHHHHcCCCCH
Confidence 9999999999997543
No 64
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.45 E-value=1.2e-11 Score=124.78 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=133.5
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEec-CCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC-ANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~-g~d~e~~~~AA~~v~ 180 (436)
+.|++.+.|....+..+-.+++++|.-.+.--| . .+.+....+. .....+++.+. |.+++++.++.++++
T Consensus 37 ~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k~-~-------~e~~~~~~r~-~~~~~l~v~~~vg~~~~~~~~~~~Lv~ 107 (326)
T PRK05458 37 KLPVVPANMQTIIDEKIAEWLAENGYFYIMHRF-D-------PEARIPFIKD-MHEQGLIASISVGVKDDEYDFVDQLAA 107 (326)
T ss_pred cCcEEEecccchhHHHHHHHHHHcCCEEEEecC-C-------HHHHHHHHHh-ccccccEEEEEecCCHHHHHHHHHHHh
Confidence 459999999989999888899988653333222 1 1111111111 11223455554 346788899999999
Q ss_pred CCC--cEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 181 PYC--DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 181 ~g~--D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
+|+ |.|-|.+.-+ +-+.+.++++++++... +||.+| +.. +.+-++.+.++|+|.|.
T Consensus 108 ag~~~d~i~iD~a~g---------------h~~~~~e~I~~ir~~~p~~~vi~g-----~V~-t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 108 EGLTPEYITIDIAHG---------------HSDSVINMIQHIKKHLPETFVIAG-----NVG-TPEAVRELENAGADATK 166 (326)
T ss_pred cCCCCCEEEEECCCC---------------chHHHHHHHHHHHhhCCCCeEEEE-----ecC-CHHHHHHHHHcCcCEEE
Confidence 854 9999975322 24678888999998884 888887 111 34557888899999998
Q ss_pred ec---cCcccc-cCCCCCccCHHH--HHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 258 VH---GRTRDE-KDGKKFRADWNA--IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 258 VH---gRt~~~-~~~~~g~ad~~~--i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
|+ |+.+.+ .....+.++|.+ +..+++.+++|||++|||.++.|+.++|.. |||+||+|+.++.
T Consensus 167 vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~-GA~aV~vG~~~~~ 235 (326)
T PRK05458 167 VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GATMVMIGSLFAG 235 (326)
T ss_pred ECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHh-CCCEEEechhhcC
Confidence 86 333222 112234577775 888888889999999999999999999997 9999999988874
No 65
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.45 E-value=1.9e-12 Score=124.24 Aligned_cols=142 Identities=24% Similarity=0.257 Sum_probs=109.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------
Q 013813 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------ 234 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------ 234 (436)
-+|+.| ......++.++++.|+|.|= .|+.++++++.+.++++.+... .+.+++++|.
T Consensus 74 pi~~gg-GI~~~ed~~~~~~~Ga~~vv--------------lgs~~l~d~~~~~~~~~~~g~~-~i~~sid~~~~~v~~~ 137 (230)
T TIGR00007 74 PVQVGG-GIRSLEDVEKLLDLGVDRVI--------------IGTAAVENPDLVKELLKEYGPE-RIVVSLDARGGEVAVK 137 (230)
T ss_pred CEEEeC-CcCCHHHHHHHHHcCCCEEE--------------EChHHhhCHHHHHHHHHHhCCC-cEEEEEEEECCEEEEc
Confidence 355533 44444445555667888873 3566778899999999988522 2455566553
Q ss_pred CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 235 FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 235 g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
|+. ..+..++++.+++.|++.|++|.+++++... ..||+.++++++.+++||+++|||.+.+|++++++ +|||
T Consensus 138 g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~---g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~-~Gad 213 (230)
T TIGR00007 138 GWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLS---GPNFELTKELVKAVNVPVIASGGVSSIDDLIALKK-LGVY 213 (230)
T ss_pred CCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-CCCC
Confidence 232 2356789999999999999999999886543 47999999999999999999999999999999886 6999
Q ss_pred eeeeehHHhhC
Q 013813 312 GVLSAESLLEN 322 (436)
Q Consensus 312 gVmIGRgal~n 322 (436)
+||+|++++.+
T Consensus 214 gv~ig~a~~~~ 224 (230)
T TIGR00007 214 GVIVGKALYEG 224 (230)
T ss_pred EEEEeHHHHcC
Confidence 99999999887
No 66
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.44 E-value=1.6e-12 Score=125.61 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=114.1
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccEEEE---ec-c
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCK---IR-V 234 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPVsVK---iR-l 234 (436)
+-+|+ |.....+.++..+++.|+|.|-| |+.++++|+.+.++++.+.. .+-+.+.+| +. .
T Consensus 77 ~~l~v-~GGi~~~~~~~~~~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~ 141 (241)
T PRK13585 77 VPVQL-GGGIRSAEDAASLLDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIK 141 (241)
T ss_pred CcEEE-cCCcCCHHHHHHHHHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEEC
Confidence 44555 44444555555566789999865 56678899999999888732 221222222 11 1
Q ss_pred CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 235 FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 235 g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
|+. ..+..++++.+++.|++.|++|+++.++... ..+|+.++++++.+++||+++|||+|.+|+.++++ .||+
T Consensus 142 g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~---g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~-~Ga~ 217 (241)
T PRK13585 142 GWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLE---GVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKE-AGAA 217 (241)
T ss_pred CCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCC
Confidence 332 1267899999999999999999998764432 47999999999999999999999999999999655 6999
Q ss_pred eeeeehHHhhCCccchhhh
Q 013813 312 GVLSAESLLENPALFAGFR 330 (436)
Q Consensus 312 gVmIGRgal~nP~lf~~i~ 330 (436)
+|++|++++.+|..+.++.
T Consensus 218 gv~vgsa~~~~~~~~~~~~ 236 (241)
T PRK13585 218 GVVVGSALYKGKFTLEEAI 236 (241)
T ss_pred EEEEEHHHhcCCcCHHHHH
Confidence 9999999999999877654
No 67
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=99.42 E-value=1.3e-13 Score=136.45 Aligned_cols=244 Identities=14% Similarity=0.183 Sum_probs=167.6
Q ss_pred CCCCCccccCCCCCCCCCCchhHhHHHHHHHHHH----hCCCc-------EEEccCCCCCcHHHHHHHHHhCCCeEEeCc
Q 013813 66 PSSLPETASSSLPSPRGYLSGEARAERAWAHWTK----LGRPK-------LIVAPMVDNSELPFRMLCRRYGAEAAYTPM 134 (436)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----lg~~~-------i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem 134 (436)
.+-+|||-..|.|||.-..--+|+|+.+|+|... |.+++ +.-.|.-+.... ...+ -....|.
T Consensus 110 ~k~~npf~~~s~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t~~~~~~------p~~~-i~~niel 182 (471)
T KOG1799|consen 110 QKPANPFHQKSKPPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPTKRSCFI------PKRP-IPTNIEL 182 (471)
T ss_pred ccCCCccccCCCCCCccHHHHHhhhhcccchhheeeeecchhhheecccceeeccCCCCccc------cCCC-ccchhhh
Confidence 5788999999999999999999999999998732 22322 222222221110 0001 1456777
Q ss_pred ccchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHH
Q 013813 135 LHSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPL 212 (436)
Q Consensus 135 isa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~ 212 (436)
|+.+......... .+++...+.+-+|.+++. ++...+.+.+...+ +|.|..|+|+.||+..-.++ +|.++.+.|..
T Consensus 183 Isdr~~e~~L~~f-~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~erg-mgla~gq~p~v 260 (471)
T KOG1799|consen 183 ISDRKAEQYLGTF-GELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERG-MGLALGQCPIV 260 (471)
T ss_pred hccchHHHHHHHH-HHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCcccc-ccceeccChhh
Confidence 8776543322221 123322233334444333 55666777776665 48999999999999988777 89999999999
Q ss_pred HHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec---------------------cCcccccCCCCC
Q 013813 213 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH---------------------GRTRDEKDGKKF 271 (436)
Q Consensus 213 v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH---------------------gRt~~~~~~~~g 271 (436)
+.||..+|+..+.+|+.-| ..+++.+..+.++.....|+.+|+.. +|+.. .++++
T Consensus 261 ~~EvC~Wi~A~~~Ip~~~k--mTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~--GG~S~ 336 (471)
T KOG1799|consen 261 DCEVCGWINAKATIPMVSK--MTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTP--GGYSY 336 (471)
T ss_pred hHHHhhhhhhccccccccc--cCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCC--CCccc
Confidence 9999999999999999999 45577788888888888888887531 11111 11222
Q ss_pred ----ccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 272 ----RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 272 ----~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++.+..+..|++.. ..|+.+.|||.|.+|+.+++.. |+.-|+++.|.+..-
T Consensus 337 ~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~-Gs~~vQVCt~V~~~~ 392 (471)
T KOG1799|consen 337 KAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILL-GSNTVQVCTGVMMHG 392 (471)
T ss_pred cccchHHHHHHHHHHHHhhcCccccccCcccccchhhHhhc-CCcHhhhhhHHHhcC
Confidence 23344444455444 6899999999999999999986 999999999986644
No 68
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.41 E-value=2.8e-12 Score=125.18 Aligned_cols=141 Identities=19% Similarity=0.261 Sum_probs=109.7
Q ss_pred EEecC--CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHh-c----ccC-------cc
Q 013813 162 VQFCA--NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA-L----NLN-------VP 227 (436)
Q Consensus 162 vQL~g--~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~-~----~~~-------iP 227 (436)
+|+.| .+.+++.++ ++.|++.|-|+ +.++.+|+.+.++.+.+. + .++ .|
T Consensus 77 v~~~GGi~s~~~~~~~---l~~Ga~~Viig--------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~ 139 (253)
T PRK02083 77 LTVGGGIRSVEDARRL---LRAGADKVSIN--------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGR 139 (253)
T ss_pred EEeeCCCCCHHHHHHH---HHcCCCEEEEC--------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCC
Confidence 44444 345555444 44688998765 556788999999998863 1 222 46
Q ss_pred EEEEeccCCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHH
Q 013813 228 VSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 228 VsVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l 305 (436)
++||+|.+.. ..+..++++.+++.|++.|++|+..+.++.. .+||+.++++++.+++|||++|||.|.+|+.+++
T Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~---g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~ 216 (253)
T PRK02083 140 WEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKN---GYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAF 216 (253)
T ss_pred EEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCC---CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH
Confidence 7899998754 2366788999999999999998866543322 3689999999999999999999999999999999
Q ss_pred HhcCcceeeeehHHhhC
Q 013813 306 EETGCEGVLSAESLLEN 322 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~n 322 (436)
+.+|||+||+|++++..
T Consensus 217 ~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 217 TEGGADAALAASIFHFG 233 (253)
T ss_pred HhCCccEEeEhHHHHcC
Confidence 87899999999998765
No 69
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.39 E-value=2.3e-11 Score=124.40 Aligned_cols=200 Identities=20% Similarity=0.243 Sum_probs=133.2
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCC-HHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAND-PEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d-~e~~~~ 174 (436)
..|+++|||.... +...-+.|.+.|.-.+.+-+-+ ..+ +. +.....+.|+.+||.-.. .+...+
T Consensus 80 ~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss-~sl----Ee----v~~~~~~~~~wfQlY~~~dr~~~~~ 150 (367)
T TIGR02708 80 KSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYST-ADL----PE----ISEALNGTPHWFQFYMSKDDGINRD 150 (367)
T ss_pred ccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeeccccc-CCH----HH----HHhhcCCCceEEEEeccCCHHHHHH
Confidence 4588999988643 4555566666666555544321 111 11 111113468999999854 444466
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhh---cCcc-----------------ccccc-----CChHHHHHHHHHHhcccCcc
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IAR---RGNY-----------------GAFLM-----DNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~---~~~~-----------------Gs~Ll-----~~p~~v~eIv~av~~~~~iP 227 (436)
..++++ .|+.+|-|...+|.. +.. +.++ +.... .++.+--+-++++++.+++|
T Consensus 151 li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~P 230 (367)
T TIGR02708 151 IMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLP 230 (367)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCCC
Confidence 667765 499999998877752 111 0101 10000 01222225678888888999
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHH
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK 303 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~ 303 (436)
|+|| |.. ..+.|+.+.++|+++|.| ||+. +...++++|+.+.++++.+ ++|||++|||++..|+.+
T Consensus 231 vivK---Gv~---~~eda~~a~~~Gvd~I~VS~HGGr----q~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~K 300 (367)
T TIGR02708 231 VYVK---GPQ---CPEDADRALKAGASGIWVTNHGGR----QLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFK 300 (367)
T ss_pred EEEe---CCC---CHHHHHHHHHcCcCEEEECCcCcc----CCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHH
Confidence 9999 221 245688899999998855 6653 2234578899999999877 499999999999999999
Q ss_pred HHHhcCcceeeeehHHhh
Q 013813 304 CLEETGCEGVLSAESLLE 321 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal~ 321 (436)
+|. .|||+|||||.+|.
T Consensus 301 aLa-lGAd~V~igR~~l~ 317 (367)
T TIGR02708 301 ALA-SGADLVALGRPVIY 317 (367)
T ss_pred HHH-cCCCEEEEcHHHHH
Confidence 999 59999999998765
No 70
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.36 E-value=7.8e-12 Score=122.25 Aligned_cols=141 Identities=21% Similarity=0.250 Sum_probs=109.3
Q ss_pred EEecC--CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHh-ccc--Ccc-----E---
Q 013813 162 VQFCA--NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA-LNL--NVP-----V--- 228 (436)
Q Consensus 162 vQL~g--~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~-~~~--~iP-----V--- 228 (436)
+|+.| .+.+++.+ ++..|++.|-++ ..++.+|+++.++.+... +.+ .+. +
T Consensus 77 v~~~GGi~s~~d~~~---~~~~Ga~~vivg--------------t~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~ 139 (254)
T TIGR00735 77 LTVGGGIKSIEDVDK---LLRAGADKVSIN--------------TAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSY 139 (254)
T ss_pred EEEECCCCCHHHHHH---HHHcCCCEEEEC--------------hhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCC
Confidence 55544 34555444 445688887664 566788999999988773 222 222 1
Q ss_pred ---EEEeccCCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHH
Q 013813 229 ---SCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 303 (436)
Q Consensus 229 ---sVKiRlg~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~ 303 (436)
-||+|.+.. ..+..++++.++++|++.|++|++++++.. ..++|++++++++.+++||+++|||.+++|+.+
T Consensus 140 ~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~---~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~ 216 (254)
T TIGR00735 140 CWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTK---SGYDLELTKAVSEAVKIPVIASGGAGKPEHFYE 216 (254)
T ss_pred ccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCC---CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHH
Confidence 477777644 456789999999999999999999886532 358999999999999999999999999999999
Q ss_pred HHHhcCcceeeeehHHhhC
Q 013813 304 CLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal~n 322 (436)
+++.+|||+||+|++++..
T Consensus 217 ~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 217 AFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHcCCcceeeEhHHHhCC
Confidence 9998679999999998654
No 71
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.36 E-value=1.3e-11 Score=125.79 Aligned_cols=202 Identities=18% Similarity=0.223 Sum_probs=132.2
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
..|+++|||.... +.+.-+.|.+.|.-.+.+-+- ...+ +. +.....+.+..+|+... |.+...+
T Consensus 72 ~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s-~~s~----Ee----i~~~~~~~~~wfQlY~~~d~~~~~~ 142 (351)
T cd04737 72 KTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYS-NTSL----EE----IAKASNGGPKWFQLYMSKDDGFNRS 142 (351)
T ss_pred cchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCC-CCCH----HH----HHHhcCCCCeEEEEeecCCHHHHHH
Confidence 3578889987532 244444555555555443331 1111 11 11112245899999975 4555555
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhhcC---cc------------------ccccc-----CChHHHHHHHHHHhcccCc
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IARRG---NY------------------GAFLM-----DNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~~~---~~------------------Gs~Ll-----~~p~~v~eIv~av~~~~~i 226 (436)
..++++ .||..|-|...+|.. +..++ ++ |.... -++.+--+.++++++.+++
T Consensus 143 ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~ 222 (351)
T cd04737 143 LLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGL 222 (351)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHhCC
Confidence 556665 489999998877652 11111 00 00000 0122334667888888899
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~ 302 (436)
||.||- . ...+.++.+.++|+|+|+| ||+.. ...++..++.+.++++.+ ++|||++|||.+..|+.
T Consensus 223 PvivKg---v---~~~~dA~~a~~~G~d~I~vsnhGGr~----ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~ 292 (351)
T cd04737 223 PVIVKG---I---QSPEDADVAINAGADGIWVSNHGGRQ----LDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVF 292 (351)
T ss_pred cEEEec---C---CCHHHHHHHHHcCCCEEEEeCCCCcc----CCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHH
Confidence 999993 1 1235678899999999999 76532 123467789999999887 69999999999999999
Q ss_pred HHHHhcCcceeeeehHHhhCC
Q 013813 303 KCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRgal~nP 323 (436)
++|. .|||+|||||+++...
T Consensus 293 kaLa-lGA~~V~iGr~~l~~l 312 (351)
T cd04737 293 KALA-SGADAVAVGRPVLYGL 312 (351)
T ss_pred HHHH-cCCCEEEECHHHHHHH
Confidence 9999 5999999999887743
No 72
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.35 E-value=3.4e-11 Score=118.33 Aligned_cols=229 Identities=18% Similarity=0.171 Sum_probs=155.8
Q ss_pred HHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChh------------------------h----
Q 013813 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEK------------------------Y---- 146 (436)
Q Consensus 95 ~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~------------------------~---- 146 (436)
.||.+--+|||.+|--.+-+.-+.-.|.. .|.+++-+.-++...-..|.+ .
T Consensus 87 k~~g~~f~NPiglAAGfdk~~eaidgL~~-~gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~r 165 (398)
T KOG1436|consen 87 KVLGRKFSNPIGLAAGFDKNAEAIDGLAN-SGFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQR 165 (398)
T ss_pred HHhhhhccCchhhhhccCcchHHHHHHHh-CCCceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHHH
Confidence 38876678999999988877776666665 777777666554311000000 0
Q ss_pred -hh-hhhhccCCCCCEEEEecCCC-----HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHH
Q 013813 147 -RN-EEFATCKEDRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219 (436)
Q Consensus 147 -~~-~~~~~~~~e~plivQL~g~d-----~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~a 219 (436)
+. ......+...++.|.|+-+. ..++.+-.+...+.+|+..||..||+.. |-.-|+.-..+.+++.+
T Consensus 166 l~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtp------Glr~lq~k~~L~~ll~~ 239 (398)
T KOG1436|consen 166 LRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTP------GLRSLQKKSDLRKLLTK 239 (398)
T ss_pred HHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCc------chhhhhhHHHHHHHHHH
Confidence 00 11122233455788887664 3445555555556789999999999963 22223333334444443
Q ss_pred Hhc-------ccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc------------ccCCCCCc----cCHH
Q 013813 220 LAL-------NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------EKDGKKFR----ADWN 276 (436)
Q Consensus 220 v~~-------~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~------------~~~~~~g~----ad~~ 276 (436)
+.. ....||.+||-.....++..+++..+.+.++|.+++.+-|.+ +..+.+|+ ...+
T Consensus 240 v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~ 319 (398)
T KOG1436|consen 240 VVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTN 319 (398)
T ss_pred HHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHH
Confidence 322 124699999887766778889999999999999999765432 22333333 3567
Q ss_pred HHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH-hhCCccchhhhh
Q 013813 277 AIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 331 (436)
Q Consensus 277 ~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga-l~nP~lf~~i~~ 331 (436)
.++.+...+ +||||+.|||.|..||.+.++. ||..|++++++ +..|-+|.+++.
T Consensus 320 ~vR~mY~lt~g~IpiIG~GGV~SG~DA~Ekira-GASlvQlyTal~yeGp~i~~kIk~ 376 (398)
T KOG1436|consen 320 TVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRA-GASLVQLYTALVYEGPAIIEKIKR 376 (398)
T ss_pred HHHHHHHhccCCCceEeecCccccHhHHHHHhc-CchHHHHHHHHhhcCchhHHHHHH
Confidence 788888876 7999999999999999999996 99999999997 788999988864
No 73
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.32 E-value=8.1e-11 Score=119.88 Aligned_cols=206 Identities=17% Similarity=0.163 Sum_probs=133.3
Q ss_pred CCcEEEccCCCCC---c---HHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEec-CCCHHHHHH
Q 013813 102 RPKLIVAPMVDNS---E---LPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFC-ANDPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt---d---~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~-g~d~e~~~~ 174 (436)
+.|+++|||.... . ...-+.|.+.|...+.+-+-+. .+ +.. .....++.|+.+||. ..|.+...+
T Consensus 64 ~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~-s~----e~v---~~~~~~~~~~w~Qly~~~d~~~~~~ 135 (344)
T cd02922 64 SLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC-SL----EEI---VDARPPDQPLFFQLYVNKDRTKTEE 135 (344)
T ss_pred CCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccC-CH----HHH---HHhcCCCCcEEEEEeecCCHHHHHH
Confidence 4689999999433 2 2444455555655544333211 11 111 111133568999996 457777777
Q ss_pred HHHHHcC-CCcEEEEecCCCch-hhh---cCccc-------------------ccc---cCChHHHHHHHHHHhcccCcc
Q 013813 175 AARRVEP-YCDYVDINLGCPQR-IAR---RGNYG-------------------AFL---MDNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 175 AA~~v~~-g~D~IdLN~GCP~~-~~~---~~~~G-------------------s~L---l~~p~~v~eIv~av~~~~~iP 227 (436)
..++++. ||++|-|++..|.. +.. +.++- ... ..++....+.++++++.+++|
T Consensus 136 l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~P 215 (344)
T cd02922 136 LLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLP 215 (344)
T ss_pred HHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCc
Confidence 7777765 99999999988852 100 11110 000 113445567888999999999
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh---C--CCcEEEccCCCCHHHHH
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA---L--RIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~---~--~iPVianGGI~s~eda~ 302 (436)
|.|| +. ...+-++.+.++|+|+|+|.+.-..+... ...-+..+.++++. + ++|||+.|||.+..|+.
T Consensus 216 vivK---gv---~~~~dA~~a~~~G~d~I~vsnhgG~~~d~--~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~ 287 (344)
T cd02922 216 IVLK---GV---QTVEDAVLAAEYGVDGIVLSNHGGRQLDT--APAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVL 287 (344)
T ss_pred EEEE---cC---CCHHHHHHHHHcCCCEEEEECCCcccCCC--CCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHH
Confidence 9999 22 12456788999999999995432211111 12334556666552 2 59999999999999999
Q ss_pred HHHHhcCcceeeeehHHhhCCc
Q 013813 303 KCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++|.. |||+|+|||+++..+.
T Consensus 288 kalaL-GA~aV~iG~~~l~~l~ 308 (344)
T cd02922 288 KALCL-GAKAVGLGRPFLYALS 308 (344)
T ss_pred HHHHc-CCCEEEECHHHHHHHh
Confidence 99997 9999999999988664
No 74
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.30 E-value=1.1e-10 Score=118.45 Aligned_cols=196 Identities=20% Similarity=0.295 Sum_probs=119.4
Q ss_pred HHHHhC-CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHH
Q 013813 96 HWTKLG-RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILL 173 (436)
Q Consensus 96 ~~~~lg-~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~ 173 (436)
+++.|| +.||++|||.++|+..|-..+.+.|. +.+-+-..+.+.+.......+. + .++|+.|+++....+...
T Consensus 4 ~t~~lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~-~----t~~pfgvnl~~~~~~~~~ 78 (330)
T PF03060_consen 4 LTELLGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRA-L----TDKPFGVNLFLPPPDPAD 78 (330)
T ss_dssp HHHHHT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHH-H-----SS-EEEEEETTSTTHHH
T ss_pred HHHHhCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHh-h----ccccccccccccCcccch
Confidence 667788 88999999999999999888888876 4444333333333222111111 1 245999999876533322
Q ss_pred H----------H-HH-HHcC--------------CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCcc
Q 013813 174 N----------A-AR-RVEP--------------YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 174 ~----------A-A~-~v~~--------------g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iP 227 (436)
. . .. .++. +++.|-..+|.|.. ++++.+++ .++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~-------------------~~i~~l~~-~gi~ 138 (330)
T PF03060_consen 79 EEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPP-------------------EVIERLHA-AGIK 138 (330)
T ss_dssp H-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-H-------------------HHHHHHHH-TT-E
T ss_pred hhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchH-------------------HHHHHHHH-cCCc
Confidence 2 1 11 1222 34588888877742 23444443 3677
Q ss_pred EEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 228 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 228 VsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
|.+.+- ..+.|+.+.+.|+|.|++.|....+-.+.....-+.++..+++.+++|||+.|||.+.+++..+|..
T Consensus 139 v~~~v~-------s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~l 211 (330)
T PF03060_consen 139 VIPQVT-------SVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALAL 211 (330)
T ss_dssp EEEEES-------SHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHC
T ss_pred cccccC-------CHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHc
Confidence 777742 2445778899999999998876543222111123678889999999999999999999999999986
Q ss_pred cCcceeeeehHHhhCCc
Q 013813 308 TGCEGVLSAESLLENPA 324 (436)
Q Consensus 308 tGaDgVmIGRgal~nP~ 324 (436)
|||||++|+.++.-++
T Consensus 212 -GA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 212 -GADGVQMGTRFLATEE 227 (330)
T ss_dssp -T-SEEEESHHHHTSTT
T ss_pred -CCCEeecCCeEEeccc
Confidence 9999999999987766
No 75
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=99.23 E-value=7.6e-11 Score=120.15 Aligned_cols=164 Identities=17% Similarity=0.181 Sum_probs=124.2
Q ss_pred HHHHHHHHHHH-cCCCcEEEEec---------CCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEecc--
Q 013813 169 PEILLNAARRV-EPYCDYVDINL---------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV-- 234 (436)
Q Consensus 169 ~e~~~~AA~~v-~~g~D~IdLN~---------GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRl-- 234 (436)
.|-+..||+.+ +.|||+||||- -.|..|.|+|.||+++.++-+++.|++++|++.++ ....+-+..
T Consensus 173 ~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 173 VDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 56777778877 77999999993 48999999999999999999999999999999873 333333331
Q ss_pred ----CCChhhHHHHHHHHHHcCccEEEeccCcccc-------cCCC--CCccCHHHHHHHHhhCCCcEE-EccCCCCHHH
Q 013813 235 ----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KDGK--KFRADWNAIKAVKNALRIPVL-ANGNVRHMED 300 (436)
Q Consensus 235 ----g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-------~~~~--~g~ad~~~i~~ik~~~~iPVi-anGGI~s~ed 300 (436)
+++.++...++..++..|+|.+-+.|++... ++.- .-....++...++...+.+|+ ++||..+.+.
T Consensus 253 fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~ 332 (400)
T KOG0134|consen 253 FQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREA 332 (400)
T ss_pred hhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHH
Confidence 3566777888999999999965554443321 1110 001234556667767666665 6678999999
Q ss_pred HHHHHHhcCcceeeeehHHhhCCccchhhhhh
Q 013813 301 VQKCLEETGCEGVLSAESLLENPALFAGFRTA 332 (436)
Q Consensus 301 a~~~l~~tGaDgVmIGRgal~nP~lf~~i~~~ 332 (436)
+.++++....|+|..||.++.||+|..++..+
T Consensus 333 ~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~ 364 (400)
T KOG0134|consen 333 MVEAVKSGRTDLIGYGRPFLANPDLPKRLLNG 364 (400)
T ss_pred HHHHHhcCCceeEEecchhccCCchhHHHHhC
Confidence 99999998888999999999999999988643
No 76
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.21 E-value=1.3e-09 Score=109.78 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=132.4
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCC-CEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDR-PLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~-plivQL~g~d~e~~~~AA~~v~ 180 (436)
..||+.+.|..+.+..+-.+++++|.-.+.-+| +.... ..+ ++...+.. ++.+. .|..++++.++..+++
T Consensus 34 ~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~-~~E~~---~sf----vrk~k~~~L~v~~S-vG~t~e~~~r~~~lv~ 104 (321)
T TIGR01306 34 KLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF-DEESR---IPF----IKDMQERGLFASIS-VGVKACEYEFVTQLAE 104 (321)
T ss_pred cCcEEeeccchhhhHHHHHHHHHcCCEEEEecC-CHHHH---HHH----HHhccccccEEEEE-cCCCHHHHHHHHHHHh
Confidence 458999999999999998999998765554443 22211 111 22222222 23333 3667888999999999
Q ss_pred CC--CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe
Q 013813 181 PY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 181 ~g--~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V 258 (436)
+| .|.|-+-.. .| +-+.+.+.++++++....|+.++=.+ .+.+.|+.+.++|+|.|.|
T Consensus 105 a~~~~d~i~~D~a-------hg--------~s~~~~~~i~~i~~~~p~~~vi~GnV-----~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 105 EALTPEYITIDIA-------HG--------HSNSVINMIKHIKTHLPDSFVIAGNV-----GTPEAVRELENAGADATKV 164 (321)
T ss_pred cCCCCCEEEEeCc-------cC--------chHHHHHHHHHHHHhCCCCEEEEecC-----CCHHHHHHHHHcCcCEEEE
Confidence 87 688766531 11 34678889999998887775555222 2456788999999999999
Q ss_pred c---cCccccc-CCCCCccCH--HHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 259 H---GRTRDEK-DGKKFRADW--NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 259 H---gRt~~~~-~~~~g~ad~--~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+ |++...+ ....+..+| ..+.++++..++|||+.|||++..|+.++|.. |||+||+||.+-.
T Consensus 165 ~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~-GAd~Vmig~~~ag 232 (321)
T TIGR01306 165 GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GASMVMIGSLFAG 232 (321)
T ss_pred CCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHc-CCCEEeechhhcC
Confidence 7 5543111 111123345 47888888889999999999999999999997 9999999976643
No 77
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.20 E-value=2.4e-10 Score=109.80 Aligned_cols=152 Identities=24% Similarity=0.272 Sum_probs=119.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-- 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-- 234 (436)
..++-||++|.- -+...+..+++.|++.|-+ |+.-.++|+++.++++..... +-|.+-.|.
T Consensus 73 ~~~~~vQvGGGI-Rs~~~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~r--ivv~lD~r~g~ 135 (241)
T COG0106 73 ATDVPVQVGGGI-RSLEDVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDR--IVVALDARDGK 135 (241)
T ss_pred hCCCCEEeeCCc-CCHHHHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCc--EEEEEEccCCc
Confidence 346679998753 3345555667778776654 566689999999999998744 455555555
Q ss_pred ----CCCh---hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 235 ----FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 235 ----g~~~---~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
||.. -+..++++.+++.|+..|.+|..+++++.. .+|++.++++.+.+++||+++|||.|.+|++.+.+.
T Consensus 136 vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~---G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~ 212 (241)
T COG0106 136 VAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLS---GPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKEL 212 (241)
T ss_pred cccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccC---CCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhc
Confidence 3432 267899999999999999999999987654 479999999999999999999999999999987764
Q ss_pred cCcceeeeehHHhhCCccchh
Q 013813 308 TGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 308 tGaDgVmIGRgal~nP~lf~~ 328 (436)
.|+.||.+||++|..-.-+.+
T Consensus 213 ~G~~GvIvG~ALy~g~~~l~e 233 (241)
T COG0106 213 SGVEGVIVGRALYEGKFTLEE 233 (241)
T ss_pred CCCcEEEEehHHhcCCCCHHH
Confidence 389999999999987654443
No 78
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.17 E-value=1.4e-09 Score=112.48 Aligned_cols=135 Identities=21% Similarity=0.211 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
|..++.+.++..++++|+|.|=|-..- .+.+.+.++++.+++.+ +.+|.++ + -.+.+-
T Consensus 149 g~~~~~~~~v~~lv~aGvDvI~iD~a~---------------g~~~~~~~~v~~ik~~~p~~~vi~g-----~-V~T~e~ 207 (404)
T PRK06843 149 SIDIDTIERVEELVKAHVDILVIDSAH---------------GHSTRIIELVKKIKTKYPNLDLIAG-----N-IVTKEA 207 (404)
T ss_pred eCCHHHHHHHHHHHhcCCCEEEEECCC---------------CCChhHHHHHHHHHhhCCCCcEEEE-----e-cCCHHH
Confidence 556788888888899999998886432 12467888999999887 6888887 2 122345
Q ss_pred HHHHHHcCccEEEeccCcccc----c-CCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDE----K-DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~----~-~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.+.++|+|+|.+ |.+... + ....|.+++..+..+++ ..++|||+.|||++..|+.++|.. |||+||+|
T Consensus 208 a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALal-GA~aVmvG 285 (404)
T PRK06843 208 ALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAA-GADSVMIG 285 (404)
T ss_pred HHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEc
Confidence 77788899999986 432211 1 01123456665544444 458999999999999999999996 99999999
Q ss_pred hHHhhCC
Q 013813 317 ESLLENP 323 (436)
Q Consensus 317 Rgal~nP 323 (436)
+.+..-.
T Consensus 286 s~~agt~ 292 (404)
T PRK06843 286 NLFAGTK 292 (404)
T ss_pred ceeeeee
Confidence 9987643
No 79
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.14 E-value=1.8e-09 Score=110.32 Aligned_cols=198 Identities=18% Similarity=0.164 Sum_probs=131.7
Q ss_pred CcEEEccCCC------CCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHH
Q 013813 103 PKLIVAPMVD------NSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAA 176 (436)
Q Consensus 103 ~~i~lAPM~g------vtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA 176 (436)
.|+++||+.- -.+.+.-+.|.+.|...+.+-+-+.. + +.... ..+.|..+||.-.+.+......
T Consensus 65 ~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~s-i----Eeva~-----a~~~~~wfQLY~~~r~~~~~ll 134 (361)
T cd04736 65 APLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMS-I----EDVAR-----QADGDLWFQLYVVHRELAELLV 134 (361)
T ss_pred ccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCC-H----HHHHh-----hcCCCeEEEEEecCHHHHHHHH
Confidence 5778888754 23455556666677666555543221 1 11111 1235799999998855555555
Q ss_pred HHHc-CCCcEEEEecCCCch-hhh---cCccccc----------------------------c-----------------
Q 013813 177 RRVE-PYCDYVDINLGCPQR-IAR---RGNYGAF----------------------------L----------------- 206 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~GCP~~-~~~---~~~~Gs~----------------------------L----------------- 206 (436)
++++ .||.+|-|...+|.. +.. +.++-.- +
T Consensus 135 ~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (361)
T cd04736 135 KRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAAL 214 (361)
T ss_pred HHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHH
Confidence 6665 499999999877762 211 1111000 0
Q ss_pred ---cCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHH
Q 013813 207 ---MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAV 281 (436)
Q Consensus 207 ---l~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~i 281 (436)
.-++.+.-+.++++++.++.||.+| +.. ..+-++.+.++|+|+|.| ||.+.- .. .+...+.+.++
T Consensus 215 ~~~~~d~~~~w~~i~~ir~~~~~pviiK-----gV~-~~eda~~a~~~G~d~I~VSnhGGrql--d~--~~~~~~~L~ei 284 (361)
T cd04736 215 MSRQMDASFNWQDLRWLRDLWPHKLLVK-----GIV-TAEDAKRCIELGADGVILSNHGGRQL--DD--AIAPIEALAEI 284 (361)
T ss_pred HHhccCCcCCHHHHHHHHHhCCCCEEEe-----cCC-CHHHHHHHHHCCcCEEEECCCCcCCC--cC--CccHHHHHHHH
Confidence 0122233357888999999999999 222 233477788999999988 444322 22 24568889999
Q ss_pred HhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 282 k~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++.+++|||+.|||++..|+.++|.. |||+|||||+++.
T Consensus 285 ~~~~~~~vi~dGGIr~g~Dv~KALaL-GA~aV~iGr~~l~ 323 (361)
T cd04736 285 VAATYKPVLIDSGIRRGSDIVKALAL-GANAVLLGRATLY 323 (361)
T ss_pred HHHhCCeEEEeCCCCCHHHHHHHHHc-CCCEEEECHHHHH
Confidence 98889999999999999999999997 9999999998875
No 80
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.11 E-value=2.2e-10 Score=111.80 Aligned_cols=90 Identities=21% Similarity=0.357 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++++.+++.|++.|+||.+++.+... +.+|+.++++++.+++||+++|||+|.+|+++++. .||++|++|++
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~-~Ga~~Viigt~ 105 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR---DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLR-AGADKVSINSA 105 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC---cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 478899999999999999999999864332 68999999999999999999999999999999998 59999999999
Q ss_pred HhhCCccchhhhhh
Q 013813 319 LLENPALFAGFRTA 332 (436)
Q Consensus 319 al~nP~lf~~i~~~ 332 (436)
++.||++|.++...
T Consensus 106 ~l~~p~~~~ei~~~ 119 (253)
T PRK02083 106 AVANPELISEAADR 119 (253)
T ss_pred HhhCcHHHHHHHHH
Confidence 99999999988653
No 81
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.10 E-value=3.3e-09 Score=106.73 Aligned_cols=188 Identities=15% Similarity=0.143 Sum_probs=119.9
Q ss_pred CCcEEEccCCCCCc-HHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHH-HHHHHHH-
Q 013813 102 RPKLIVAPMVDNSE-LPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPE-ILLNAAR- 177 (436)
Q Consensus 102 ~~~i~lAPM~gvtd-~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e-~~~~AA~- 177 (436)
+.||+++||.++|+ ..|-..+.+.|+ +++-....+...+...... .+..-.++|+.|.|.+..++ .+.+..+
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~----~~~l~tdkPfGVnl~~~~~~~~~~~~l~v 77 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEE----TAELLGDKPWGVGILGFVDTELRAAQLAV 77 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHH----HHHhccCCCeEEEEeccCCCcchHHHHHH
Confidence 45899999999999 788887777775 3332233322222111111 11112478999999653221 1223333
Q ss_pred HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 178 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 178 ~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
+++.++..|-+.+|.|.. ++.++ ..++.|.+.+ .+...++.+++.|+|.|+
T Consensus 78 i~e~~v~~V~~~~G~P~~---------------------~~~lk-~~Gi~v~~~v-------~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 78 VRAIKPTFALIAGGRPDQ---------------------ARALE-AIGISTYLHV-------PSPGLLKQFLENGARKFI 128 (320)
T ss_pred HHhcCCcEEEEcCCChHH---------------------HHHHH-HCCCEEEEEe-------CCHHHHHHHHHcCCCEEE
Confidence 345688899888766631 13333 3377777663 224567889999999999
Q ss_pred eccCcccccCCCCCccCHHHHHHHHhh----------CCCcEEEccCCCCHHHHHHHHHhcCc--------ceeeeehHH
Q 013813 258 VHGRTRDEKDGKKFRADWNAIKAVKNA----------LRIPVLANGNVRHMEDVQKCLEETGC--------EGVLSAESL 319 (436)
Q Consensus 258 VHgRt~~~~~~~~g~ad~~~i~~ik~~----------~~iPVianGGI~s~eda~~~l~~tGa--------DgVmIGRga 319 (436)
+.|....+-.+. ...+.++..+.+. .++|||+.|||.+...+..++.. |+ +||.+|+.+
T Consensus 129 aqG~EAGGH~G~--~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaL-GA~~~~~Ga~~GV~mGTrF 205 (320)
T cd04743 129 FEGRECGGHVGP--RSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSAL-AAPLAERGAKVGVLMGTAY 205 (320)
T ss_pred EecCcCcCCCCC--CCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHc-CCcccccccccEEEEccHH
Confidence 998877543221 1112233333332 27999999999999999988876 77 899999999
Q ss_pred hhCCcc
Q 013813 320 LENPAL 325 (436)
Q Consensus 320 l~nP~l 325 (436)
+.-++.
T Consensus 206 l~t~Es 211 (320)
T cd04743 206 LFTEEA 211 (320)
T ss_pred hcchhh
Confidence 886665
No 82
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.09 E-value=3.1e-10 Score=109.96 Aligned_cols=90 Identities=22% Similarity=0.371 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
..++.++++.++++|++.|++|.++..... .+.+++.++++++.+++||+++|||+|.+|++++++. |||+|++|+
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~---~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~-G~~~v~ig~ 101 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEG---RETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRA-GADKVSINS 101 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCccccc---CcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc-CCceEEECc
Confidence 348889999999999999999999875422 3679999999999999999999999999999999985 999999999
Q ss_pred HHhhCCccchhhhh
Q 013813 318 SLLENPALFAGFRT 331 (436)
Q Consensus 318 gal~nP~lf~~i~~ 331 (436)
+++.||+++.++..
T Consensus 102 ~~~~~p~~~~~i~~ 115 (243)
T cd04731 102 AAVENPELIREIAK 115 (243)
T ss_pred hhhhChHHHHHHHH
Confidence 99999999988764
No 83
>PLN02535 glycolate oxidase
Probab=99.09 E-value=1.4e-09 Score=111.35 Aligned_cols=204 Identities=19% Similarity=0.172 Sum_probs=130.0
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
..|+++||+.... +.+.-+.|.+.|.-.+.+-+ +...+ +. +.. ..+.+..+||.-. |.+...+
T Consensus 72 ~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~-s~~sl----Ee----va~-~~~~~~wfQlY~~~dr~~~~~ 141 (364)
T PLN02535 72 SAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFM-ASCTV----EE----VAS-SCNAVRFLQLYVYKRRDIAAQ 141 (364)
T ss_pred cccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCc-ccCCH----HH----HHh-cCCCCeEEEEeccCCHHHHHH
Confidence 3589999987532 34444455555554444333 11111 11 111 1246899999984 4666666
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhhcC---cccc--------------------c----c--cCChHHHHHHHHHHhcc
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IARRG---NYGA--------------------F----L--MDNLPLVKSLVEKLALN 223 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~~~---~~Gs--------------------~----L--l~~p~~v~eIv~av~~~ 223 (436)
..++++ .||.+|-|...+|.. +..++ ++.. . + .-++.+--+-++++++.
T Consensus 142 ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~ 221 (364)
T PLN02535 142 LVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSI 221 (364)
T ss_pred HHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhc
Confidence 667775 499999998888772 11111 1100 0 0 00222223567888888
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHH
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDV 301 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda 301 (436)
.+.||.||- ... .+-++.+.++|+|+|.|.+.-.-+. ..++.....+.++++.+ ++|||+.|||.+..|+
T Consensus 222 ~~~PvivKg-----V~~-~~dA~~a~~~GvD~I~vsn~GGr~~--d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv 293 (364)
T PLN02535 222 TNLPILIKG-----VLT-REDAIKAVEVGVAGIIVSNHGARQL--DYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDV 293 (364)
T ss_pred cCCCEEEec-----CCC-HHHHHHHHhcCCCEEEEeCCCcCCC--CCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHH
Confidence 899999992 111 2337888899999999954322121 11244467788888765 6999999999999999
Q ss_pred HHHHHhcCcceeeeehHHhhCCc
Q 013813 302 QKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 302 ~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.++|.. |||+|+|||+++....
T Consensus 294 ~KALal-GA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 294 FKALAL-GAQAVLVGRPVIYGLA 315 (364)
T ss_pred HHHHHc-CCCEEEECHHHHhhhh
Confidence 999997 9999999999987554
No 84
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.06 E-value=5.2e-09 Score=107.88 Aligned_cols=202 Identities=21% Similarity=0.208 Sum_probs=129.4
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
..|+.+||+.... +...-+.|.+.|.-.+.+-+-+. .+ +. +.....+.+..+||.-. |.+...+
T Consensus 85 ~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~-sl----Ee----Ia~~~~~~~~wfQlY~~~dr~~~~~ 155 (383)
T cd03332 85 AAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSS-SI----ED----VAAAAGDAPRWFQLYWPKDDDLTES 155 (383)
T ss_pred cccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCC-CH----HH----HHhhcCCCCcEEEeeCCCCHHHHHH
Confidence 3588999998533 45555566666665555444321 11 11 11112346899999886 5666666
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhhc---Ccccccc--------c----------------------------------
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IARR---GNYGAFL--------M---------------------------------- 207 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~~---~~~Gs~L--------l---------------------------------- 207 (436)
..++++ .||.+|-|....|.. +..+ .++.... +
T Consensus 156 ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (383)
T cd03332 156 LLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVF 235 (383)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhc
Confidence 666665 499999998666552 1111 1110000 0
Q ss_pred CChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-- 285 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-- 285 (436)
-++.+--+-++++++.++.||.+| .... .+-|+.+.++|+|+|+|.+.-.-+. ..+.+..+.+.++++.+
T Consensus 236 ~~~~~tW~~i~~lr~~~~~pvivK-----gV~~-~~dA~~a~~~G~d~I~vsnhGGr~~--d~~~~t~~~L~ei~~~~~~ 307 (383)
T cd03332 236 SGPSLTWEDLAFLREWTDLPIVLK-----GILH-PDDARRAVEAGVDGVVVSNHGGRQV--DGSIAALDALPEIVEAVGD 307 (383)
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEe-----cCCC-HHHHHHHHHCCCCEEEEcCCCCcCC--CCCcCHHHHHHHHHHHhcC
Confidence 011122256777888889999999 1122 2446778899999999953222111 12345577888888876
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++||++.|||++..|+.++|.. |||+|++||.++.
T Consensus 308 ~~~vi~dGGIr~G~Dv~KALaL-GA~~v~iGr~~l~ 342 (383)
T cd03332 308 RLTVLFDSGVRTGADIMKALAL-GAKAVLIGRPYAY 342 (383)
T ss_pred CCeEEEeCCcCcHHHHHHHHHc-CCCEEEEcHHHHH
Confidence 5999999999999999999986 9999999999883
No 85
>PLN02979 glycolate oxidase
Probab=99.01 E-value=1.9e-08 Score=102.53 Aligned_cols=201 Identities=19% Similarity=0.206 Sum_probs=129.1
Q ss_pred CCcEEEccCCCC------CcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDN------SELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gv------td~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
..|+++||+... .+.+.-+.|.+.|.-.+.+-+- ...+ +. +... .+.+..+||.-. |.+...+
T Consensus 69 ~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~s-s~sl----Ee----Ia~a-~~~~~wfQLY~~~Dr~~~~~ 138 (366)
T PLN02979 69 SMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWA-TSSV----EE----VAST-GPGIRFFQLYVYKNRNVVEQ 138 (366)
T ss_pred CccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCc-CCCH----HH----HHhc-cCCCeEEEEeecCCHHHHHH
Confidence 458999998853 2345555666666655544422 1111 11 1111 235799999864 5555555
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhh---cCcccc-------cc----------------------cCChHHHHHHHHHH
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IAR---RGNYGA-------FL----------------------MDNLPLVKSLVEKL 220 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~---~~~~Gs-------~L----------------------l~~p~~v~eIv~av 220 (436)
-.++++ .|+.+|-|...+|.. +.. +.++.. .+ .-++.+-=+-++++
T Consensus 139 ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wl 218 (366)
T PLN02979 139 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 218 (366)
T ss_pred HHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 556665 499999998877773 111 111100 00 00112222557889
Q ss_pred hcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCH
Q 013813 221 ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHM 298 (436)
Q Consensus 221 ~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~ 298 (436)
++..++||.||-= .. .+-|+.+.++|+|+|+|.+.-..+. ...++..+.+.++++.+ ++||++.|||++.
T Consensus 219 r~~~~~PvivKgV-----~~-~~dA~~a~~~Gvd~I~VsnhGGrql--d~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G 290 (366)
T PLN02979 219 QTITKLPILVKGV-----LT-GEDARIAIQAGAAGIIVSNHGARQL--DYVPATISALEEVVKATQGRIPVFLDGGVRRG 290 (366)
T ss_pred HhccCCCEEeecC-----CC-HHHHHHHHhcCCCEEEECCCCcCCC--CCchhHHHHHHHHHHHhCCCCeEEEeCCcCcH
Confidence 9999999999931 22 3457788999999999965433222 12244567788887765 5999999999999
Q ss_pred HHHHHHHHhcCcceeeeehHHhh
Q 013813 299 EDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal~ 321 (436)
.|+.++|.. |||+|+|||.++.
T Consensus 291 ~Di~KALAL-GAdaV~iGrp~L~ 312 (366)
T PLN02979 291 TDVFKALAL-GASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHHc-CCCEEEEcHHHHH
Confidence 999999997 9999999998764
No 86
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.01 E-value=1.5e-08 Score=104.44 Aligned_cols=201 Identities=17% Similarity=0.198 Sum_probs=127.8
Q ss_pred CCcEEEccCCCC------CcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecC-CCHHHHHH
Q 013813 102 RPKLIVAPMVDN------SELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCA-NDPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gv------td~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g-~d~e~~~~ 174 (436)
..|+++||+... .+...-+.|.+.|...+.+.+-+. .+ +. +... .+.++.+||.- .|.+...+
T Consensus 70 ~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~-sl----Ee----ia~~-~~~~~wfQlY~~~Dr~~~~~ 139 (381)
T PRK11197 70 SMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVC-PI----EE----VAPA-IKRPMWFQLYVLRDRGFMRN 139 (381)
T ss_pred ccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcC-CH----HH----HHhc-cCCCeEEEEEecCCHHHHHH
Confidence 357888888742 456666677777776655553221 11 11 1111 24689999964 46666666
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhh---cCccccc------c---cCC-----------------------------hH
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IAR---RGNYGAF------L---MDN-----------------------------LP 211 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~---~~~~Gs~------L---l~~-----------------------------p~ 211 (436)
..++++ .||.+|-|...+|.. +.. +.++-.- + +.+ ..
T Consensus 140 li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~ 219 (381)
T PRK11197 140 ALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED 219 (381)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhH
Confidence 667775 499999999888862 111 1111100 0 000 00
Q ss_pred H---H---------HHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHH
Q 013813 212 L---V---------KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 212 ~---v---------~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~ 279 (436)
+ + =+-++++++.++.||.+| ... ..+-|+.+.++|+|+|.|.+.-..+... ...-.+.+.
T Consensus 220 ~~~~~~~~~~~~ltW~di~~lr~~~~~pvivK-----gV~-s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~--~~~t~~~L~ 291 (381)
T PRK11197 220 YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIK-----GIL-DPEDARDAVRFGADGIVVSNHGGRQLDG--VLSSARALP 291 (381)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHhCCCCEEEE-----ecC-CHHHHHHHHhCCCCEEEECCCCCCCCCC--cccHHHHHH
Confidence 0 0 022778888899999999 222 2334777889999999984322112111 133456777
Q ss_pred HHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 280 AVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 280 ~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++++.+ ++||++.|||++..|+.++|.. |||+|++||.++.
T Consensus 292 ~i~~a~~~~~~vi~dGGIr~g~Di~KALaL-GA~~V~iGr~~l~ 334 (381)
T PRK11197 292 AIADAVKGDITILADSGIRNGLDVVRMIAL-GADTVLLGRAFVY 334 (381)
T ss_pred HHHHHhcCCCeEEeeCCcCcHHHHHHHHHc-CcCceeEhHHHHH
Confidence 777665 6999999999999999999997 9999999998865
No 87
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.00 E-value=8.3e-09 Score=101.00 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=114.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCC----hHHHHHHHHHH-hcccCccEEEEe
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN----LPLVKSLVEKL-ALNLNVPVSCKI 232 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~----p~~v~eIv~av-~~~~~iPVsVKi 232 (436)
.++-||++|.=- . .++.++++.|++-|-|| +...++ |+++.++++.. .+.+-+-+.+|.
T Consensus 82 ~~~~vqvGGGIR-~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~ 145 (262)
T PLN02446 82 YPGGLQVGGGVN-S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK 145 (262)
T ss_pred CCCCEEEeCCcc-H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 347799999875 3 66667788899999887 344455 99999999998 333333333331
Q ss_pred cc--------CCC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHH
Q 013813 233 RV--------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 301 (436)
Q Consensus 233 Rl--------g~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda 301 (436)
.- ||. .-+..+++..+.+.|+..|.++...++++.. .+|++.++++++.+++|||++|||.|.+|+
T Consensus 146 ~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~---G~d~el~~~l~~~~~ipVIASGGv~sleDi 222 (262)
T PLN02446 146 KDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRL---GIDEELVALLGEHSPIPVTYAGGVRSLDDL 222 (262)
T ss_pred cCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCccc---CCCHHHHHHHHhhCCCCEEEECCCCCHHHH
Confidence 12 332 2367888889999999999999988886544 479999999999999999999999999999
Q ss_pred HHHHHhc-CcceeeeehHH--hhCCccc
Q 013813 302 QKCLEET-GCEGVLSAESL--LENPALF 326 (436)
Q Consensus 302 ~~~l~~t-GaDgVmIGRga--l~nP~lf 326 (436)
.++.+.+ |+.+|.+|+++ +.+---+
T Consensus 223 ~~L~~~g~g~~gvIvGkAl~~y~g~~~l 250 (262)
T PLN02446 223 ERVKVAGGGRVDVTVGSALDIFGGNLPY 250 (262)
T ss_pred HHHHHcCCCCEEEEEEeeHHHhCCCccH
Confidence 9988764 78999999999 5554333
No 88
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.99 E-value=1.1e-08 Score=104.80 Aligned_cols=199 Identities=23% Similarity=0.284 Sum_probs=125.4
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
+.||++|||.+.+ +...-+.|.+.|.-...+-+-+. .+ +... .. ...|..+||.-. +.+...+
T Consensus 58 s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~-~~----e~ia---~~--~~~~~~~Qly~~~d~~~~~~ 127 (356)
T PF01070_consen 58 SMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSA-SL----EEIA---AA--SGGPLWFQLYPPRDRELTRD 127 (356)
T ss_dssp SSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSS-CH----HHHH---HH--CTSEEEEEEEGBSSHHHHHH
T ss_pred CCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccC-CH----HHHH---hh--ccCCeEEEEEEecCHHHHHH
Confidence 5689999998643 34555566666765544333221 11 1111 11 127899999654 6777777
Q ss_pred HHHHHcC-CCcEEEEecCCCchhhh----cCcccc---------------------------------------ccc---
Q 013813 175 AARRVEP-YCDYVDINLGCPQRIAR----RGNYGA---------------------------------------FLM--- 207 (436)
Q Consensus 175 AA~~v~~-g~D~IdLN~GCP~~~~~----~~~~Gs---------------------------------------~Ll--- 207 (436)
..++++. |+++|-++..+|+...+ +.++.- .+.
T Consensus 128 ~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (356)
T PF01070_consen 128 LIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQ 207 (356)
T ss_dssp HHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCH
T ss_pred HHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHh
Confidence 7777764 99999998766552111 111100 000
Q ss_pred CChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe--ccCcccccCCCCCccCHHHHHHHHhhC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL 285 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~ 285 (436)
-++..--+-++++++.+++||.||== .+ .+-++.+.++|+++|.| ||.+.- . .+..-.+.+.++++.+
T Consensus 208 ~~~~~~w~~i~~~~~~~~~pvivKgv--~~----~~da~~~~~~G~~~i~vs~hGGr~~--d--~~~~~~~~L~~i~~~~ 277 (356)
T PF01070_consen 208 FDPSLTWDDIEWIRKQWKLPVIVKGV--LS----PEDAKRAVDAGVDGIDVSNHGGRQL--D--WGPPTIDALPEIRAAV 277 (356)
T ss_dssp B-TT-SHHHHHHHHHHCSSEEEEEEE---S----HHHHHHHHHTT-SEEEEESGTGTSS--T--TS-BHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhcccCCceEEEec--cc----HHHHHHHHhcCCCEEEecCCCcccC--c--cccccccccHHHHhhh
Confidence 02223334578888889999999932 12 23367788999999999 455432 1 2355577888888866
Q ss_pred --CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 286 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 286 --~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++||++.|||++..|+.+++.. ||++|.|||.++.
T Consensus 278 ~~~~~i~~dgGir~g~Dv~kalaL-GA~~v~igr~~l~ 314 (356)
T PF01070_consen 278 GDDIPIIADGGIRRGLDVAKALAL-GADAVGIGRPFLY 314 (356)
T ss_dssp TTSSEEEEESS--SHHHHHHHHHT-T-SEEEESHHHHH
T ss_pred cCCeeEEEeCCCCCHHHHHHHHHc-CCCeEEEccHHHH
Confidence 5999999999999999999997 9999999998764
No 89
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.99 E-value=3.3e-09 Score=102.31 Aligned_cols=145 Identities=26% Similarity=0.337 Sum_probs=108.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC--
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-- 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg-- 235 (436)
.++-+|+.|. ...+.++.++++.|++.|-|| +..+++|+++.++++..... .+-+++-+|-+
T Consensus 72 ~~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvig--------------t~~~~~~~~l~~~~~~~g~~-~ivvslD~~~g~~ 135 (229)
T PF00977_consen 72 TGIPIQVGGG-IRSIEDAERLLDAGADRVVIG--------------TEALEDPELLEELAERYGSQ-RIVVSLDARDGYK 135 (229)
T ss_dssp SSSEEEEESS-E-SHHHHHHHHHTT-SEEEES--------------HHHHHCCHHHHHHHHHHGGG-GEEEEEEEEETEE
T ss_pred CCccEEEeCc-cCcHHHHHHHHHhCCCEEEeC--------------hHHhhchhHHHHHHHHcCcc-cEEEEEEeeeceE
Confidence 3467888775 445666777788899877665 56778999999999988652 23333333333
Q ss_pred -----CC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 236 -----PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 236 -----~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
|. ..+..++++.+++.|+..|.++.-.++++.. .+|++.++.+++.+++|||++|||.+.+|+.++.+.
T Consensus 136 v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~---G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~ 212 (229)
T PF00977_consen 136 VATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQ---GPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKA 212 (229)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---S--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHT
T ss_pred EEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcC---CCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHC
Confidence 33 2468899999999999999999888876544 478999999999999999999999999999998864
Q ss_pred cCcceeeeehHHhhC
Q 013813 308 TGCEGVLSAESLLEN 322 (436)
Q Consensus 308 tGaDgVmIGRgal~n 322 (436)
|+++|++|++++..
T Consensus 213 -G~~gvivg~al~~g 226 (229)
T PF00977_consen 213 -GIDGVIVGSALHEG 226 (229)
T ss_dssp -TECEEEESHHHHTT
T ss_pred -CCcEEEEehHhhCC
Confidence 99999999999764
No 90
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.98 E-value=1.7e-08 Score=103.46 Aligned_cols=201 Identities=20% Similarity=0.220 Sum_probs=129.4
Q ss_pred CCcEEEccCCCCC------cHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHH
Q 013813 102 RPKLIVAPMVDNS------ELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLN 174 (436)
Q Consensus 102 ~~~i~lAPM~gvt------d~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~ 174 (436)
+.||++||+.... +...-+.|.+.|...+.+-+-+. .+ +. +... .+.|..+||.-. |.+...+
T Consensus 70 ~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~-sl----Ee----va~~-~~~~~wfQlY~~~Dr~~~~~ 139 (367)
T PLN02493 70 SMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATS-SV----EE----VAST-GPGIRFFQLYVYKNRNVVEQ 139 (367)
T ss_pred cccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccC-CH----HH----HHhc-CCCCcEEEEeecCCHHHHHH
Confidence 3589999987532 34555566666766555443221 11 11 1111 235799999965 4555555
Q ss_pred HHHHHc-CCCcEEEEecCCCch-hhh---cCcccc-------cc----------------------cCChHHHHHHHHHH
Q 013813 175 AARRVE-PYCDYVDINLGCPQR-IAR---RGNYGA-------FL----------------------MDNLPLVKSLVEKL 220 (436)
Q Consensus 175 AA~~v~-~g~D~IdLN~GCP~~-~~~---~~~~Gs-------~L----------------------l~~p~~v~eIv~av 220 (436)
..++++ .||.+|-|...+|.. +.. +.+|-. .+ .-++.+-=+-++++
T Consensus 140 li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wl 219 (367)
T PLN02493 140 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 219 (367)
T ss_pred HHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 556665 499999998877773 111 111100 00 00111112446888
Q ss_pred hcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCH
Q 013813 221 ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHM 298 (436)
Q Consensus 221 ~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~ 298 (436)
++..++||.||- ... .+-++.+.++|+|+|.|.+.-..+.. ..++-.+.+.++++.+ ++||++.|||++.
T Consensus 220 r~~~~~PiivKg-----V~~-~~dA~~a~~~Gvd~I~VsnhGGrqld--~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G 291 (367)
T PLN02493 220 QTITKLPILVKG-----VLT-GEDARIAIQAGAAGIIVSNHGARQLD--YVPATISALEEVVKATQGRIPVFLDGGVRRG 291 (367)
T ss_pred HhccCCCEEeec-----CCC-HHHHHHHHHcCCCEEEECCCCCCCCC--CchhHHHHHHHHHHHhCCCCeEEEeCCcCcH
Confidence 988999999992 222 34577889999999999554332222 2244567788887765 5999999999999
Q ss_pred HHHHHHHHhcCcceeeeehHHhh
Q 013813 299 EDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal~ 321 (436)
.|+.++|.. ||++|+|||.++.
T Consensus 292 ~Dv~KALAL-GA~aV~iGr~~l~ 313 (367)
T PLN02493 292 TDVFKALAL-GASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHHHc-CCCEEEEcHHHHH
Confidence 999999997 9999999998774
No 91
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.98 E-value=1.2e-08 Score=99.30 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHH-----HHHHHHhcccCccEE--EEeccCCChh
Q 013813 167 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK-----SLVEKLALNLNVPVS--CKIRVFPNLQ 239 (436)
Q Consensus 167 ~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~-----eIv~av~~~~~iPVs--VKiRlg~~~~ 239 (436)
.+.+++.++++.++.++|.||||+-||.... -|..+.+..+.+. ++++++++.+++|+. +|+.. -..
T Consensus 15 p~~~~~~~~~~~l~~~ad~iElgip~sdp~a----dG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~--~~~ 88 (244)
T PRK13125 15 PNVESFKEFIIGLVELVDILELGIPPKYPKY----DGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED--YVD 88 (244)
T ss_pred CCHHHHHHHHHHHHhhCCEEEECCCCCCCCC----CCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch--hhh
Confidence 4789999999877655999999999988632 2566666677766 899999988889974 56443 234
Q ss_pred hHHHHHHHHHHcCccEEEeccCcc---c---------------------c---------------------cCCCCC---
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTR---D---------------------E---------------------KDGKKF--- 271 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~---~---------------------~---------------------~~~~~g--- 271 (436)
+..++++.+.++|+++|++|.-.. + + ..+..|
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~ 168 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPL 168 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCc
Confidence 667788888889999998874210 0 0 000111
Q ss_pred ccC-HHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 272 RAD-WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 272 ~ad-~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
..+ .+.++++++.. +.||+.-|||++.+++.++++. |||+|.+|++++.
T Consensus 169 ~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~-gaD~vvvGSai~~ 219 (244)
T PRK13125 169 PVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSA-GADGVVVGTAFIE 219 (244)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHc-CCCEEEECHHHHH
Confidence 112 34677777776 5899999999999999998886 9999999999875
No 92
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.95 E-value=3.3e-08 Score=102.72 Aligned_cols=214 Identities=13% Similarity=0.087 Sum_probs=115.5
Q ss_pred HHHHhC-CCcEEEccCC-CCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCC--CHH
Q 013813 96 HWTKLG-RPKLIVAPMV-DNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCAN--DPE 170 (436)
Q Consensus 96 ~~~~lg-~~~i~lAPM~-gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~--d~e 170 (436)
|.+.+| +.||++|||+ |+|+..+=..+.+.|. +.+-+..++...+.......+..+ ..++|+.|+|+.+ +++
T Consensus 6 f~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~l---t~~~PfGVNL~~~~~~~~ 82 (418)
T cd04742 6 FKEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAAL---GNGEPYGVNLIHSPDEPE 82 (418)
T ss_pred HHHHhCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhc---cCCCCeEEeeecCCCCch
Confidence 455566 7799999999 7999987666666664 444444444433322211111111 1278999999964 333
Q ss_pred HHHHHHHH-HcCCCcEEEEec-CCCc-hhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe-cc-------CCChh
Q 013813 171 ILLNAARR-VEPYCDYVDINL-GCPQ-RIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI-RV-------FPNLQ 239 (436)
Q Consensus 171 ~~~~AA~~-v~~g~D~IdLN~-GCP~-~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi-Rl-------g~~~~ 239 (436)
...+..++ ++.++..|+... +-+. ..++-...|-..-.+- +-.....|..|+ |. ++-..
T Consensus 83 ~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g----------~~~~~~~ViakVsr~evAs~~f~ppp~ 152 (418)
T cd04742 83 LEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADG----------RVQIANRIIAKVSRPEVAEAFMSPAPE 152 (418)
T ss_pred hHHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccc----------cccccceEEEecCChhhhhhhcCCCCH
Confidence 33334444 456888877652 1111 0010000000000000 000012233332 11 11000
Q ss_pred h-----------HHHHHHHHHHcC-ccEEEeccCccccc-CCCCCccCHHHHHHHHhhC--------CCcEEEccCCCCH
Q 013813 240 D-----------TIKYAKMLEDAG-CSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL--------RIPVLANGNVRHM 298 (436)
Q Consensus 240 d-----------~~~~ak~le~aG-~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~~--------~iPVianGGI~s~ 298 (436)
+ +.+-|+.+++.| +|.|++. ....+- ...+...-+..+..+++.+ ++||++.|||.|+
T Consensus 153 ~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg 231 (418)
T cd04742 153 RILKKLLAEGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTP 231 (418)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCH
Confidence 0 234466777788 5999986 222211 1110011223344444444 6999999999999
Q ss_pred HHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 299 EDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
+++..++.. |||+|++|+.++.-++
T Consensus 232 ~~vaAA~al-GAd~V~~GT~flat~E 256 (418)
T cd04742 232 EAAAAAFAL-GADFIVTGSINQCTVE 256 (418)
T ss_pred HHHHHHHHc-CCcEEeeccHHHhCcc
Confidence 999999997 9999999999998776
No 93
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.95 E-value=1e-08 Score=99.95 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=113.7
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec-c--
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR-V-- 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR-l-- 234 (436)
.++-+|+.|.- ....++.++++.|+|-|-+| +...++|+++.++.+...+.+ -+++-.| -
T Consensus 73 ~~~~v~vgGGI-rs~e~~~~~l~~Ga~~vvig--------------T~a~~~p~~~~~~~~~~g~~i--vvslD~k~~g~ 135 (243)
T TIGR01919 73 LVVVEELSGGR-RDDSSLRAALTGGRARVNGG--------------TAALENPWWAAAVIRYGGDIV--AVGLDVLEDGE 135 (243)
T ss_pred CCCCEEEcCCC-CCHHHHHHHHHcCCCEEEEC--------------chhhCCHHHHHHHHHHccccE--EEEEEEecCCc
Confidence 34668887742 33444445667788887554 556789999999988875443 3444443 1
Q ss_pred -------CCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHH-
Q 013813 235 -------FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC- 304 (436)
Q Consensus 235 -------g~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~- 304 (436)
||. ..+..++++.+++.|+..|.++...++++.. .+|++.++++++.+++|||++|||.|.+|+.++
T Consensus 136 ~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~---G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~ 212 (243)
T TIGR01919 136 WHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSG---GPNELLLEVVAARTDAIVAASGGSSLLDDLRAIK 212 (243)
T ss_pred eEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCC---CcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHH
Confidence 232 2367889999999999999999988886644 479999999999999999999999999999987
Q ss_pred -HHhcCcceeeeehHHhhCCccchh
Q 013813 305 -LEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 305 -l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
+...|++||++|++++.+---+.+
T Consensus 213 ~l~~~Gv~gvivg~Al~~g~i~~~~ 237 (243)
T TIGR01919 213 YLDEGGVSVAIGGKLLYARFFTLEA 237 (243)
T ss_pred hhccCCeeEEEEhHHHHcCCCCHHH
Confidence 334599999999999887644443
No 94
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.95 E-value=2.6e-09 Score=104.49 Aligned_cols=89 Identities=20% Similarity=0.350 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.|+++...+... ....+++.++++++.+++||++.|||+|.+|+++++.. ||+.|++|++
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~-Ga~~vivgt~ 105 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRA-GADKVSINTA 105 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHc-CCCEEEEChh
Confidence 4788999999999999999999987643 22578999999999999999999999999999999985 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||+++.++..
T Consensus 106 ~~~~p~~~~~~~~ 118 (254)
T TIGR00735 106 AVKNPELIYELAD 118 (254)
T ss_pred HhhChHHHHHHHH
Confidence 9999999998764
No 95
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.94 E-value=1.4e-08 Score=97.11 Aligned_cols=127 Identities=19% Similarity=0.307 Sum_probs=93.0
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCCh--HHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHc
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNL--PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p--~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~a 251 (436)
++-..++.|+|.|-++..+ ..+| +.+.++++.+++..++++.+.+. + .+.+..+.+.
T Consensus 84 ~~~~a~~aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~---t----~~ea~~a~~~ 142 (219)
T cd04729 84 EVDALAAAGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIS---T----LEEALNAAKL 142 (219)
T ss_pred HHHHHHHcCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECC---C----HHHHHHHHHc
Confidence 4444566799999888532 1122 26778888777655688888642 2 2235777889
Q ss_pred CccEEEe--ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 252 GCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 252 G~d~I~V--HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|+|+|.+ ||++.... .....++++++.+++.+++||+++|||.+++++.++++. |||+|++|++++...+
T Consensus 143 G~d~i~~~~~g~t~~~~--~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~-GadgV~vGsal~~~~~ 214 (219)
T cd04729 143 GFDIIGTTLSGYTEETA--KTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALEL-GADAVVVGSAITRPEH 214 (219)
T ss_pred CCCEEEccCcccccccc--CCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHC-CCCEEEEchHHhChHh
Confidence 9999965 56554322 122467899999999999999999999999999999996 8999999999765444
No 96
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.94 E-value=3.5e-08 Score=99.22 Aligned_cols=136 Identities=12% Similarity=0.167 Sum_probs=112.8
Q ss_pred CCCCCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEe
Q 013813 155 KEDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 232 (436)
Q Consensus 155 ~~e~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKi 232 (436)
....|+..|+++.+++++.+.++ .++.||+.|.||+|. +++...++++++++.+ ++++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD~ 184 (316)
T cd03319 121 PRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVDA 184 (316)
T ss_pred CCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEeC
Confidence 35677888999999999887775 456699999999763 2345567778887766 48899999
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
+.+++.+++.++++.+++.|+.+| ++. .+ +.+|+.++++++.+++||++++.+.+.++++++++.+++|.
T Consensus 185 n~~~~~~~A~~~~~~l~~~~l~~i-------EeP--~~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~ 254 (316)
T cd03319 185 NQGWTPEEAVELLRELAELGVELI-------EQP--VP-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDG 254 (316)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEE-------ECC--CC-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCE
Confidence 999999999999999999999888 221 11 46899999999999999999999999999999999989999
Q ss_pred eeee
Q 013813 313 VLSA 316 (436)
Q Consensus 313 VmIG 316 (436)
|++-
T Consensus 255 v~~~ 258 (316)
T cd03319 255 INIK 258 (316)
T ss_pred EEEe
Confidence 9765
No 97
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.93 E-value=1.8e-08 Score=97.58 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=109.7
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC----
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---- 235 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg---- 235 (436)
+-+|++|. ...+.++.++++.|++.|-|| +...++|++++++.+...+. +-|++-.+-+
T Consensus 77 ~pi~vGGG-Irs~e~v~~~l~~Ga~kvvig--------------t~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~ 139 (234)
T PRK13587 77 KDIEVGGG-IRTKSQIMDYFAAGINYCIVG--------------TKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKV 139 (234)
T ss_pred CeEEEcCC-cCCHHHHHHHHHCCCCEEEEC--------------chHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEe
Confidence 34787664 344555666777888887554 56678999999999887543 3444444332
Q ss_pred --CC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 236 --PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 236 --~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGa 310 (436)
|. ..+..++++.+++.|+..|.+....++++.. .+|++.++++.+.+++||++.|||.|.+|+.++++ .|+
T Consensus 140 ~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~---G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~-~G~ 215 (234)
T PRK13587 140 NGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMS---GPNFELTGQLVKATTIPVIASGGIRHQQDIQRLAS-LNV 215 (234)
T ss_pred cCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCC---ccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCC
Confidence 32 2356889999999999999998887776543 47899999999999999999999999999999997 499
Q ss_pred ceeeeehHHhh
Q 013813 311 EGVLSAESLLE 321 (436)
Q Consensus 311 DgVmIGRgal~ 321 (436)
++|.+|++++.
T Consensus 216 ~~vivG~a~~~ 226 (234)
T PRK13587 216 HAAIIGKAAHQ 226 (234)
T ss_pred CEEEEhHHHHh
Confidence 99999999987
No 98
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.92 E-value=3.6e-08 Score=102.37 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHhcccC-ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC------CCCCccCHHHHHH
Q 013813 208 DNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIKA 280 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~------~~~g~ad~~~i~~ 280 (436)
.+++.+.++++++++..+ +||.+|+-.+. +..++++.++..|+|+|+|.|....... ...+.+-...+..
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~---~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH---GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC---CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 456778999999999987 99999965442 3446788888888999999765332100 0111222233444
Q ss_pred HHhhC-------CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 281 VKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 281 ik~~~-------~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
+.+.+ ++||++.|||.+..|+.++|.. |||+|.+||++|.--.
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaL-GAd~V~ig~~~l~al~ 322 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALAL-GADAVGIGTAALIALG 322 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHc-CCCeeeechHHHHhcc
Confidence 44432 6999999999999999999997 9999999999986543
No 99
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.92 E-value=1.7e-08 Score=98.24 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=109.4
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-----
Q 013813 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF----- 235 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg----- 235 (436)
-+|+.|. ...+.++-+.++.|+|-|-|| +...++|+++.++ ....+. +-+++-.|-|
T Consensus 75 ~v~vGGG-Irs~e~~~~~l~~Ga~rvvig--------------T~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~~~ 136 (241)
T PRK14114 75 HIQIGGG-IRSLDYAEKLRKLGYRRQIVS--------------SKVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVAFK 136 (241)
T ss_pred cEEEecC-CCCHHHHHHHHHCCCCEEEEC--------------chhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEeeC
Confidence 4688664 333445556667788887554 5567899999999 444332 4555555433
Q ss_pred -CC---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc---
Q 013813 236 -PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET--- 308 (436)
Q Consensus 236 -~~---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t--- 308 (436)
|. .-+..++++.+++.|+..|++....++++.. .+|++.++++++.+++|||++|||.|.+|+.++.+..
T Consensus 137 gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~---G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~ 213 (241)
T PRK14114 137 GWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQ---EHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRET 213 (241)
T ss_pred CCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCC---CcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhccccc
Confidence 21 2357899999999999999999888776543 4799999999999999999999999999999988742
Q ss_pred -C-cceeeeehHHhhCCccc
Q 013813 309 -G-CEGVLSAESLLENPALF 326 (436)
Q Consensus 309 -G-aDgVmIGRgal~nP~lf 326 (436)
| ++||.+|++++.+---+
T Consensus 214 ~g~v~gvivg~Al~~g~i~~ 233 (241)
T PRK14114 214 NGLLKGVIVGRAFLEGILTV 233 (241)
T ss_pred CCcEEEEEEehHHHCCCCCH
Confidence 4 99999999998765433
No 100
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.90 E-value=5.7e-09 Score=100.14 Aligned_cols=89 Identities=26% Similarity=0.421 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.|+|+..+.... ....++++++++++.+++||+++|||++.++++++++. |||.|++|++
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~---~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~-Gad~vvigs~ 104 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG---GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDL-GVSRVIIGTA 104 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc---CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHc-CCCEEEECch
Confidence 5788999999999999999998876421 12578999999999999999999999999999999985 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||+++.++..
T Consensus 105 ~l~dp~~~~~i~~ 117 (234)
T cd04732 105 AVKNPELVKELLK 117 (234)
T ss_pred HHhChHHHHHHHH
Confidence 9999999988765
No 101
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.88 E-value=3e-08 Score=94.83 Aligned_cols=122 Identities=18% Similarity=0.267 Sum_probs=87.6
Q ss_pred HHHHcCCCcEEEEecCCCchhhhcCcccccccCCh--HHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc
Q 013813 176 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNL--PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 176 A~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p--~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~ 253 (436)
-...+.|+|.|-+.. |. ...| +.+.++++.+++..++++.+.+. +.+ -++.+.+.|+
T Consensus 82 ~~a~~aGad~I~~d~--~~------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~---t~e----e~~~a~~~G~ 140 (221)
T PRK01130 82 DALAAAGADIIALDA--TL------------RPRPDGETLAELVKRIKEYPGQLLMADCS---TLE----EGLAAQKLGF 140 (221)
T ss_pred HHHHHcCCCEEEEeC--CC------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCC---CHH----HHHHHHHcCC
Confidence 344567999887753 11 1112 55677888877645778877632 222 3567889999
Q ss_pred cEEEec--cCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 254 SLLAVH--GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 254 d~I~VH--gRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
|+|.++ |.+.... .....+++.++++++.+++||++.|||.+++++.++++. |+|+|++|++++.
T Consensus 141 d~i~~~~~g~t~~~~--~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~-GadgV~iGsai~~ 207 (221)
T PRK01130 141 DFIGTTLSGYTEETK--KPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALEL-GAHAVVVGGAITR 207 (221)
T ss_pred CEEEcCCceeecCCC--CCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHC-CCCEEEEchHhcC
Confidence 999774 3332211 122457899999999999999999999999999999985 8999999998765
No 102
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.88 E-value=4e-08 Score=95.04 Aligned_cols=142 Identities=19% Similarity=0.148 Sum_probs=109.8
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC----
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---- 235 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg---- 235 (436)
+-+|++|. ...+.++.+++..|++.|-|| +...++ +++.++++...+. .+-+++-++-+
T Consensus 79 ~~v~vgGG-ir~~edv~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~ 141 (233)
T cd04723 79 LGLWVDGG-IRSLENAQEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLK 141 (233)
T ss_pred CCEEEecC-cCCHHHHHHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeecc
Confidence 44787763 344566666777888887665 445667 8999999988541 34455555444
Q ss_pred -CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 -PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 -~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
....+..++++.+++. ++.+++.......... ..|++.++++.+.+++||++.|||.|.+|++++++. |+++|.
T Consensus 142 ~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~---g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~-G~~~vi 216 (233)
T cd04723 142 PTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQ---GPDLELLERLAARADIPVIAAGGVRSVEDLELLKKL-GASGAL 216 (233)
T ss_pred ccCcCCHHHHHHHHHHh-CCeEEEEEcCccccCC---CcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHc-CCCEEE
Confidence 2345678899999999 9999998877765432 578999999999999999999999999999999986 999999
Q ss_pred eehHHhhCC
Q 013813 315 SAESLLENP 323 (436)
Q Consensus 315 IGRgal~nP 323 (436)
+|++++.+-
T Consensus 217 vGsal~~g~ 225 (233)
T cd04723 217 VASALHDGG 225 (233)
T ss_pred EehHHHcCC
Confidence 999998774
No 103
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.88 E-value=1.2e-07 Score=93.27 Aligned_cols=134 Identities=22% Similarity=0.331 Sum_probs=90.4
Q ss_pred HHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 177 RRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 177 ~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
+++++ |+-+|--=---|......| |-+=+++|+.+.+|.+ .+++||.-|+|.|. ..-++.|+++|+|.
T Consensus 24 ~iae~aga~avm~le~~p~d~r~~g--gv~R~~~p~~I~~I~~----~V~iPVig~~kigh-----~~Ea~~L~~~GvDi 92 (287)
T TIGR00343 24 KIAEEAGAVAVMALERVPADIRASG--GVARMSDPKMIKEIMD----AVSIPVMAKVRIGH-----FVEAQILEALGVDY 92 (287)
T ss_pred HHHHHcCceEEEeeccCchhhHhcC--CeeecCCHHHHHHHHH----hCCCCEEEEeeccH-----HHHHHHHHHcCCCE
Confidence 34433 5433322223566553333 7888999988776654 45899999999864 22355566666666
Q ss_pred EEec-----------------------------------------------cCccc------------------------
Q 013813 256 LAVH-----------------------------------------------GRTRD------------------------ 264 (436)
Q Consensus 256 I~VH-----------------------------------------------gRt~~------------------------ 264 (436)
|.-+ |.|.+
T Consensus 93 IDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~ 172 (287)
T TIGR00343 93 IDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEE 172 (287)
T ss_pred EEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccch
Confidence 6431 11111
Q ss_pred -cc--CCCCCccCHHHHHHHHhhCCCcEE--EccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 265 -EK--DGKKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 265 -~~--~~~~g~ad~~~i~~ik~~~~iPVi--anGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+. ......++++.++++++..++||+ +.|||.|++++..+++. |||+|++|+++...
T Consensus 173 ~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~mel-GAdGVaVGSaI~ks 234 (287)
T TIGR00343 173 EDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQL-GADGVFVGSGIFKS 234 (287)
T ss_pred hHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHc-CCCEEEEhHHhhcC
Confidence 00 000013688999999998899998 99999999999999985 99999999999853
No 104
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.87 E-value=3.1e-08 Score=100.90 Aligned_cols=198 Identities=21% Similarity=0.240 Sum_probs=120.3
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhh--ccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHH
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIF--TESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARR 178 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l--~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~ 178 (436)
+-|++-|||-.+|+..+-....+.|. +++.-+|...+.. ...-+............+-++.--.|..++++..+..+
T Consensus 37 ~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L 116 (352)
T PF00478_consen 37 KIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEAL 116 (352)
T ss_dssp SSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHH
T ss_pred cCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHH
Confidence 45999999999999988776566654 6666555422211 00001000001112233333333335555678888888
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCCChhhHHHHHHHHHHcCccEEE
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 257 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~ 257 (436)
+++|+|.|-|... .+ .-+.+.+.++.+++... +||.+. +. -+.+-++.|.++|+|.|-
T Consensus 117 ~~agvD~ivID~a-------~g--------~s~~~~~~ik~ik~~~~~~~viaG-----NV-~T~e~a~~L~~aGad~vk 175 (352)
T PF00478_consen 117 VEAGVDVIVIDSA-------HG--------HSEHVIDMIKKIKKKFPDVPVIAG-----NV-VTYEGAKDLIDAGADAVK 175 (352)
T ss_dssp HHTT-SEEEEE-S-------ST--------TSHHHHHHHHHHHHHSTTSEEEEE-----EE--SHHHHHHHHHTT-SEEE
T ss_pred HHcCCCEEEcccc-------Cc--------cHHHHHHHHHHHHHhCCCceEEec-----cc-CCHHHHHHHHHcCCCEEE
Confidence 8899999877621 11 24667788889988875 888877 22 224557778899999998
Q ss_pred ec---cCccccc-CCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 258 VH---GRTRDEK-DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 258 VH---gRt~~~~-~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
|- |..+..+ ..+-|.+.+..|.++++ ..++|||+-|||++.-|+.++|.. |||.||+|+-+-.
T Consensus 176 VGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~-GAd~VMlG~llAg 245 (352)
T PF00478_consen 176 VGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAA-GADAVMLGSLLAG 245 (352)
T ss_dssp ESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHT-T-SEEEESTTTTT
T ss_pred EeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeee-cccceeechhhcc
Confidence 83 1111100 11122345555655554 457999999999999999999986 9999999986643
No 105
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.85 E-value=2.3e-08 Score=92.96 Aligned_cols=129 Identities=19% Similarity=0.287 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED 250 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~ 250 (436)
.+.++-.+++.|+|.|-|.+- .-.+|+.+.++++.+++.. ..+..-|.. ++-+..+.+
T Consensus 53 T~~ev~~l~~aGadIIAlDaT--------------~R~Rp~~l~~li~~i~~~~-~l~MADist-------~ee~~~A~~ 110 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDAT--------------DRPRPETLEELIREIKEKY-QLVMADIST-------LEEAINAAE 110 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-S--------------SSS-SS-HHHHHHHHHHCT-SEEEEE-SS-------HHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEecC--------------CCCCCcCHHHHHHHHHHhC-cEEeeecCC-------HHHHHHHHH
Confidence 466677788899999988741 1235678999999999887 777777532 333667889
Q ss_pred cCccEE--EeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 251 AGCSLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 251 aG~d~I--~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
+|+|.| ++.|.|..... ..+||++++++++. ++|||+-|+|+|++++.++|+. ||++|.|| +++.+|++..
T Consensus 111 ~G~D~I~TTLsGYT~~t~~---~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~-GA~aVVVG-sAITrP~~It 183 (192)
T PF04131_consen 111 LGFDIIGTTLSGYTPYTKG---DGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALEL-GAHAVVVG-SAITRPQEIT 183 (192)
T ss_dssp TT-SEEE-TTTTSSTTSTT---SSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHT-T-SEEEE--HHHH-HHHHH
T ss_pred cCCCEEEcccccCCCCCCC---CCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhc-CCeEEEEC-cccCCHHHHH
Confidence 999999 56677765433 36799999999986 9999999999999999999996 99999999 4557777544
No 106
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.85 E-value=8.8e-08 Score=94.07 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=122.7
Q ss_pred CCCCcHHHHHHHHHhCCC-eEEeCcccchh-----hcc-ChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCC
Q 013813 111 VDNSELPFRMLCRRYGAE-AAYTPMLHSRI-----FTE-SEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYC 183 (436)
Q Consensus 111 ~gvtd~~fR~l~~~~Ga~-l~~Temisa~~-----l~~-~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~ 183 (436)
++|++..--+++.+.||- ...-|-+.+.. ..+ +........+. .-+.|++-=+ - ..-+.++-.+++.|+
T Consensus 13 ~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~-~V~iPVIGi~-K--~~~~~Ea~~L~eaGv 88 (283)
T cd04727 13 MDVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMD-AVSIPVMAKV-R--IGHFVEAQILEALGV 88 (283)
T ss_pred EEeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHH-hCCCCeEEee-e--hhHHHHHHHHHHcCC
Confidence 578888888899999984 45545444332 211 11111111221 2356765322 1 222777777778899
Q ss_pred cEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEE--EeccC
Q 013813 184 DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL--AVHGR 261 (436)
Q Consensus 184 D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I--~VHgR 261 (436)
|.|| |-. -.+| +.+++..++...+.|+.+.++. .+ -+....+.|+|.| ++.|.
T Consensus 89 DiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~st---le----Eal~a~~~Gad~I~TTl~gy 143 (283)
T cd04727 89 DMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGARN---LG----EALRRISEGAAMIRTKGEAG 143 (283)
T ss_pred CEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCCC---HH----HHHHHHHCCCCEEEecCCCC
Confidence 9996 211 1223 5778888888779999988664 22 3566778999999 45455
Q ss_pred ccc------------------------ccC--CCCCccCHHHHHHHHhhCCCcEE--EccCCCCHHHHHHHHHhcCccee
Q 013813 262 TRD------------------------EKD--GKKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 262 t~~------------------------~~~--~~~g~ad~~~i~~ik~~~~iPVi--anGGI~s~eda~~~l~~tGaDgV 313 (436)
|.. ... .....++|+.++++++..++||+ +.|||.+++++.++++. |||+|
T Consensus 144 T~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~-GAdgV 222 (283)
T cd04727 144 TGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQL-GADGV 222 (283)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHc-CCCEE
Confidence 553 100 11125799999999999999997 99999999999999985 99999
Q ss_pred eeehHHhhCC
Q 013813 314 LSAESLLENP 323 (436)
Q Consensus 314 mIGRgal~nP 323 (436)
++|++++.-+
T Consensus 223 aVGSAI~~a~ 232 (283)
T cd04727 223 FVGSGIFKSE 232 (283)
T ss_pred EEcHHhhcCC
Confidence 9999998644
No 107
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.84 E-value=3.2e-07 Score=84.72 Aligned_cols=143 Identities=18% Similarity=0.284 Sum_probs=108.9
Q ss_pred CCCEEEEecCCC----HHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEE
Q 013813 157 DRPLFVQFCAND----PEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVS 229 (436)
Q Consensus 157 e~plivQL~g~d----~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVs 229 (436)
..|+++++..++ .++..+.++.+ +.|+|+|.+.. |. +.....+.+.+.+.++++.+.+ ++|+.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~pv~ 117 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI--------GSLKEGDWEEVLEEIAAVVEAADGGLPLK 117 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH--------HHHhCCCHHHHHHHHHHHHHHhcCCceEE
Confidence 578999999988 77777777655 55999999852 22 1111115788888888888874 89999
Q ss_pred EEeccCC--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH
Q 013813 230 CKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 230 VKiRlg~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l 305 (436)
++...+. +.+...++++.+.+.|++.|..+..... +..+++.++.+++.. ++||+..||+.+++.+..++
T Consensus 118 iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~------~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~ 191 (201)
T cd00945 118 VILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG------GGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAI 191 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC------CCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHH
Confidence 9988654 3456667777788999999977643221 245788899998877 67999999999999999999
Q ss_pred HhcCcceeeee
Q 013813 306 EETGCEGVLSA 316 (436)
Q Consensus 306 ~~tGaDgVmIG 316 (436)
.. ||+|+++|
T Consensus 192 ~~-Ga~g~~~g 201 (201)
T cd00945 192 EA-GADGIGTS 201 (201)
T ss_pred Hh-ccceeecC
Confidence 87 99999876
No 108
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.80 E-value=4.2e-08 Score=93.36 Aligned_cols=134 Identities=21% Similarity=0.291 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc----------
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV---------- 234 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl---------- 234 (436)
|.....+..+-+++..|+|-|-|| ++-+.+|+++.++-+.....+ -+-+..|-+.
T Consensus 80 GGGI~s~eD~~~ll~aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~ 145 (256)
T COG0107 80 GGGIRSVEDARKLLRAGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVF 145 (256)
T ss_pred cCCcCCHHHHHHHHHcCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEE
Confidence 566666777778899999999999 334678999999988876654 2334444432
Q ss_pred ---CC--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 235 ---FP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 235 ---g~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tG 309 (436)
|. +--+++++++.+++.|+..|.+....+++... .+|+++++.+++.+++|||++||..++++..+.+..+.
T Consensus 146 ~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~---GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~ 222 (256)
T COG0107 146 THGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKA---GYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGK 222 (256)
T ss_pred ecCCCcCCCcCHHHHHHHHHHcCCceEEEeeeccccccc---CcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcC
Confidence 21 22478999999999999999998887775543 58999999999999999999999999999999999988
Q ss_pred cceeeee
Q 013813 310 CEGVLSA 316 (436)
Q Consensus 310 aDgVmIG 316 (436)
||++..+
T Consensus 223 adAaLAA 229 (256)
T COG0107 223 ADAALAA 229 (256)
T ss_pred ccHHHhh
Confidence 9988655
No 109
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.79 E-value=2.8e-07 Score=96.53 Aligned_cols=207 Identities=13% Similarity=0.095 Sum_probs=113.7
Q ss_pred HHHHhC-CCcEEEccCC-CCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCC-EEEEecCCCH--
Q 013813 96 HWTKLG-RPKLIVAPMV-DNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRP-LFVQFCANDP-- 169 (436)
Q Consensus 96 ~~~~lg-~~~i~lAPM~-gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~p-livQL~g~d~-- 169 (436)
|.+.+| +.||++|||+ |+|+..+=..+.+.|. +.+-+..++...+.......+... .+.| +.|+|+.+..
T Consensus 11 f~~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~----~~~p~fGVNL~~~~~~~ 86 (444)
T TIGR02814 11 FREDYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQAL----PGGPAYGVNLIHSPSDP 86 (444)
T ss_pred HHHHhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhc----CCCCceEEEecccCCCc
Confidence 555566 7799999999 7999987666666664 444444444333322211111111 2335 9999997642
Q ss_pred HHHHHHHHH-HcCCCcEEEEecC---CCchhh-hc-----Ccccc-----cc-c--CChHHHHH--------HHHHHhcc
Q 013813 170 EILLNAARR-VEPYCDYVDINLG---CPQRIA-RR-----GNYGA-----FL-M--DNLPLVKS--------LVEKLALN 223 (436)
Q Consensus 170 e~~~~AA~~-v~~g~D~IdLN~G---CP~~~~-~~-----~~~Gs-----~L-l--~~p~~v~e--------Iv~av~~~ 223 (436)
+.-.+..++ ++.++..|+...+ .|.-.. +. +..|. .+ . .+++.+.. +|+.+.+.
T Consensus 87 ~~e~~~v~l~l~~~V~~veasa~~~~~p~~v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~ 166 (444)
T TIGR02814 87 ALEWGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAE 166 (444)
T ss_pred ccHHHHHHHHHHcCCCEEEeccccCCCcchhhhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHc
Confidence 222233343 4567888877632 333111 11 00110 00 0 12222211 22222111
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcC-ccEEEeccCcccccCCCCCccCHHHHHHH---HhhC--------CCcEEE
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAV---KNAL--------RIPVLA 291 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG-~d~I~VHgRt~~~~~~~~g~ad~~~i~~i---k~~~--------~iPVia 291 (436)
++- +.+-|+.+++.| +|.|++. ....+-.+. ...+.++..| ++.+ ++||++
T Consensus 167 -G~i-------------t~eEA~~a~~~g~aD~Ivve-~EAGGHtg~--~~~~~Llp~i~~lrd~v~~~~~y~~~VpViA 229 (444)
T TIGR02814 167 -GRI-------------TREEAELARRVPVADDICVE-ADSGGHTDN--RPLVVLLPAIIRLRDTLMRRYGYRKPIRVGA 229 (444)
T ss_pred -CCC-------------CHHHHHHHHhCCCCcEEEEe-ccCCCCCCC--CcHHHHHHHHHHHHHHHhhcccCCCCceEEE
Confidence 000 223356677787 5888874 222111010 1223444444 4444 689999
Q ss_pred ccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 292 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 292 nGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.|||.|++++..+|.. |||+|++|+.++.-++
T Consensus 230 AGGI~t~~~vaAAlaL-GAdgV~~GT~flat~E 261 (444)
T TIGR02814 230 AGGIGTPEAAAAAFML-GADFIVTGSVNQCTVE 261 (444)
T ss_pred eCCCCCHHHHHHHHHc-CCcEEEeccHHHhCcc
Confidence 9999999999999987 9999999999988776
No 110
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.78 E-value=4.8e-07 Score=86.16 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=99.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
+.|++++=++.++. ++....+.|+|+|-|.. .. + .++.+.++++.... .++.+.+-+.
T Consensus 72 ~iPi~~~~~i~~~~---~v~~~~~~Gad~v~l~~-------------~~-~-~~~~~~~~~~~~~~-~g~~~~v~v~--- 129 (217)
T cd00331 72 SLPVLRKDFIIDPY---QIYEARAAGADAVLLIV-------------AA-L-DDEQLKELYELARE-LGMEVLVEVH--- 129 (217)
T ss_pred CCCEEECCeecCHH---HHHHHHHcCCCEEEEee-------------cc-C-CHHHHHHHHHHHHH-cCCeEEEEEC---
Confidence 57877654445554 33344567999988762 11 1 23677777776643 4555555543
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh--CCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~--~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+.++ ++.+.+.|++.+.+++++.... ..+++.+.++++. .++||++.|||.+++|+.++++. |+|+|+
T Consensus 130 ~~~e----~~~~~~~g~~~i~~t~~~~~~~-----~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~-Ga~gvi 199 (217)
T cd00331 130 DEEE----LERALALGAKIIGINNRDLKTF-----EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEA-GADAVL 199 (217)
T ss_pred CHHH----HHHHHHcCCCEEEEeCCCcccc-----CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHc-CCCEEE
Confidence 2233 5566789999999997764321 4667889999887 47999999999999999999986 999999
Q ss_pred eehHHhhCCccch
Q 013813 315 SAESLLENPALFA 327 (436)
Q Consensus 315 IGRgal~nP~lf~ 327 (436)
+|++++..++.-.
T Consensus 200 vGsai~~~~~p~~ 212 (217)
T cd00331 200 IGESLMRAPDPGA 212 (217)
T ss_pred ECHHHcCCCCHHH
Confidence 9999998776543
No 111
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.77 E-value=1.1e-07 Score=96.78 Aligned_cols=190 Identities=17% Similarity=0.225 Sum_probs=114.0
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCC-CeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCH-----------
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGA-EAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDP----------- 169 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga-~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~----------- 169 (436)
+.||+++||.++|+..+-..+.+.|. +..-.-.+....+.......+. ..++|..++.+++.+
T Consensus 14 ~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~i~~~~~-----~~~~p~~~~~f~~~~~~v~~~~l~~~ 88 (336)
T COG2070 14 KYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAEIRKIRA-----LTDKPFVANNFGSAPAPVNVNILVAR 88 (336)
T ss_pred cCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHHHHHHHH-----hcCCcchhcccccccccchhheeccc
Confidence 67999999999999988776666654 3111111111112111111111 234555555555332
Q ss_pred -HHHHHHHHH-HcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 170 -EILLNAARR-VEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 170 -e~~~~AA~~-v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
+.+.+.... ++. +.-.+-..+|= .| .+.++.++. .+..|.+++- +...++
T Consensus 89 ~~~~~~~~~~ii~~~~vpvv~~~~g~----------------~~---~~~i~~~~~-~g~~v~~~v~-------~~~~A~ 141 (336)
T COG2070 89 RNAAEAGVDAIIEGAGVPVVSTSFGA----------------PP---AEFVARLKA-AGIKVIHSVI-------TVREAL 141 (336)
T ss_pred ccchHHhhhhHHhcCCCCEEeccCCC----------------Cc---HHHHHHHHH-cCCeEEEEeC-------CHHHHH
Confidence 222222221 222 23333333221 11 233444443 4667777632 246788
Q ss_pred HHHHcCccEEEeccCcccccCCC--CCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 247 MLEDAGCSLLAVHGRTRDEKDGK--KFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 247 ~le~aG~d~I~VHgRt~~~~~~~--~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
.+++.|+|.|+++|-...+-.+. ....-..++.++++.++ ||||+.|||.+.+++..+|.. |||+|.+|+.++.-.
T Consensus 142 ~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlal-GA~gVq~GT~Fl~t~ 220 (336)
T COG2070 142 KAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALAL-GADGVQMGTRFLATK 220 (336)
T ss_pred HHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHh-ccHHHHhhhhhhccc
Confidence 99999999999987765432221 01223577899999999 999999999999999999997 999999999998766
Q ss_pred c
Q 013813 324 A 324 (436)
Q Consensus 324 ~ 324 (436)
+
T Consensus 221 E 221 (336)
T COG2070 221 E 221 (336)
T ss_pred c
Confidence 5
No 112
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.76 E-value=1.4e-07 Score=91.31 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=105.0
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec-c------
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR-V------ 234 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR-l------ 234 (436)
+|+.|. ...+.++.++++.|++-|-|| +...++|+++.++.+..... .+-+++-.| -
T Consensus 76 v~vGGG-Irs~e~~~~~l~~Ga~kvvig--------------t~a~~~p~~~~~~~~~~g~~-~ivvslD~~~~~~v~~~ 139 (232)
T PRK13586 76 IQVGGG-IRDIEKAKRLLSLDVNALVFS--------------TIVFTNFNLFHDIVREIGSN-RVLVSIDYDNTKRVLIR 139 (232)
T ss_pred EEEeCC-cCCHHHHHHHHHCCCCEEEEC--------------chhhCCHHHHHHHHHHhCCC-CEEEEEEcCCCCEEEcc
Confidence 788664 223344455666788887554 56778999999999888322 234444442 1
Q ss_pred CCC--hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 235 FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 235 g~~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
||. ..+..++++.+++.|+..|.++.-.++++.. .+|++.++.+++. ..|++++|||.+.+|+.++.+. |+++
T Consensus 140 gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~---G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~-G~~g 214 (232)
T PRK13586 140 GWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTK---GIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNV-GFDY 214 (232)
T ss_pred CCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCc---CcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHC-CCCE
Confidence 232 2256789999999999999999988886544 4799999999876 4569999999999999998864 9999
Q ss_pred eeeehHHhhC
Q 013813 313 VLSAESLLEN 322 (436)
Q Consensus 313 VmIGRgal~n 322 (436)
|.+|++++.+
T Consensus 215 vivg~Aly~g 224 (232)
T PRK13586 215 IIVGMAFYLG 224 (232)
T ss_pred EEEehhhhcC
Confidence 9999999854
No 113
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.74 E-value=7.2e-07 Score=89.87 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=122.3
Q ss_pred CcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-
Q 013813 103 PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP- 181 (436)
Q Consensus 103 ~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~- 181 (436)
-|++-|.|-.+++..+-....++|.=.+.=-+++.... ..+.+. .. .+....+.+. .|-.++++.++..++++
T Consensus 46 iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~e~~---~~~v~~-~~-~~~~~~~~vs-vG~~~~d~er~~~L~~a~ 119 (343)
T TIGR01305 46 VPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEW---KAFATN-SS-PDCLQNVAVS-SGSSDNDLEKMTSILEAV 119 (343)
T ss_pred CceEecCCCcccCHHHHHHHHHCCCeEEEeeCCCHHHH---HHHHHh-hc-ccccceEEEE-eccCHHHHHHHHHHHhcC
Confidence 48999999999999887766666653332222221111 111111 01 0122345564 46678889999988887
Q ss_pred -CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec-
Q 013813 182 -YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH- 259 (436)
Q Consensus 182 -g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH- 259 (436)
+.|.|-|... .| +-+.+.+.++++++...-+..+|=.+ . +.+-++.|.++|+|.|.|.
T Consensus 120 ~~~d~iviD~A-------hG--------hs~~~i~~ik~ir~~~p~~~viaGNV----~-T~e~a~~Li~aGAD~ikVgi 179 (343)
T TIGR01305 120 PQLKFICLDVA-------NG--------YSEHFVEFVKLVREAFPEHTIMAGNV----V-TGEMVEELILSGADIVKVGI 179 (343)
T ss_pred CCCCEEEEECC-------CC--------cHHHHHHHHHHHHhhCCCCeEEEecc----c-CHHHHHHHHHcCCCEEEEcc
Confidence 4898877732 11 34678899999999886566666222 1 2234667888999999874
Q ss_pred --cCccccc-CCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 260 --GRTRDEK-DGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 260 --gRt~~~~-~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
|..+..+ ....+.+.+..+.++++.. ++|||+-|||++..|+.++|.. |||+||+|.-
T Consensus 180 GpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~-GAd~VMlG~l 243 (343)
T TIGR01305 180 GPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGA-GADFVMLGGM 243 (343)
T ss_pred cCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHc-CCCEEEECHh
Confidence 1111111 1122235677777777654 6899999999999999999986 9999999933
No 114
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.71 E-value=3.4e-07 Score=98.44 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=109.8
Q ss_pred EEEEecCCC--HHH--------HHHHHHHHcCCCcEEEEecC---CCchhhhcCcccccccCChHHHHHHHHHHhcc-cC
Q 013813 160 LFVQFCAND--PEI--------LLNAARRVEPYCDYVDINLG---CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LN 225 (436)
Q Consensus 160 livQL~g~d--~e~--------~~~AA~~v~~g~D~IdLN~G---CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~ 225 (436)
+=+|++|.= .++ +..+.+++..|+|-|-||-. -|-. -|-+.-..+|+++.++.+...+. +-
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~-----~~~~~~~~~p~~i~~~~~~fg~q~iv 389 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEE-----YIASGVKTGKTSIEQISRVYGNQAVV 389 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhh-----hhccccccCHHHHHHHHHHcCCceEE
Confidence 447888753 323 46666788999999999942 1211 11222456799999999987544 21
Q ss_pred ccEE---------------------------------EEeccCC--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCC
Q 013813 226 VPVS---------------------------------CKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 270 (436)
Q Consensus 226 iPVs---------------------------------VKiRlg~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~ 270 (436)
+-|. |.+.-+. +.-+++++++.+++.|+..|.+....++++..
T Consensus 390 vsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~-- 467 (538)
T PLN02617 390 VSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGK-- 467 (538)
T ss_pred EEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccccccc--
Confidence 1111 2211211 23477899999999999999999888876543
Q ss_pred CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 271 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 271 g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+|+++++.+++.+++|||++||+.+++|+.++++.+|+|+++.|
T Consensus 468 -G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa 512 (538)
T PLN02617 468 -GFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAA 512 (538)
T ss_pred -CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEE
Confidence 489999999999999999999999999999999998899999988
No 115
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.70 E-value=4.9e-07 Score=86.89 Aligned_cols=132 Identities=16% Similarity=0.121 Sum_probs=93.4
Q ss_pred EEecCC--CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-----
Q 013813 162 VQFCAN--DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 234 (436)
Q Consensus 162 vQL~g~--d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl----- 234 (436)
+|++|. +.++..+....+ .+++-|-| |+..+++|+++.++.. -+++-.+-
T Consensus 80 v~vgGGirs~e~~~~~~~~l-~~a~rvvi--------------gT~a~~~p~~l~~~~~--------vvslD~~~g~v~~ 136 (221)
T TIGR00734 80 LIADCGVRSPEDLETLPFTL-EFASRVVV--------------ATETLDITELLRECYT--------VVSLDFKEKFLDA 136 (221)
T ss_pred EEEcCccCCHHHHHHHHhhh-ccceEEee--------------cChhhCCHHHHHHhhh--------EEEEEeECCcccc
Confidence 888774 455544443222 23666644 4566789998887751 23333221
Q ss_pred -CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 235 -FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 235 -g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+|. +...++.+.+...|+ .+.+..-.++++.. .+|++.++++++.+++||++.|||.|.+|+.++.+. |+|+|
T Consensus 137 ~g~~-~~~~~~~~~~~~~g~-~ii~tdI~~dGt~~---G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~-Ga~~v 210 (221)
T TIGR00734 137 SGLF-ESLEEVRDFLNSFDY-GLIVLDIHSVGTMK---GPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEM-GVSAV 210 (221)
T ss_pred cccc-ccHHHHHHHHHhcCC-EEEEEECCccccCC---CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHC-CCCEE
Confidence 332 356677778888998 77776666654322 479999999999999999999999999999997764 99999
Q ss_pred eeehHHhhC
Q 013813 314 LSAESLLEN 322 (436)
Q Consensus 314 mIGRgal~n 322 (436)
++|++++..
T Consensus 211 ivgsal~~g 219 (221)
T TIGR00734 211 LVATAVHKG 219 (221)
T ss_pred EEhHHhhCC
Confidence 999998754
No 116
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.68 E-value=4.2e-07 Score=97.10 Aligned_cols=143 Identities=24% Similarity=0.265 Sum_probs=97.7
Q ss_pred CCEEE-EecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFV-QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~pliv-QL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
..|.| =..|..++++..+..+++.|+|.|.|++. + | +...+.+.++++++.. +++|.++ -.
T Consensus 228 GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a--~-----G--------~s~~~~~~i~~ik~~~~~~~v~aG--~V 290 (495)
T PTZ00314 228 GQLLVGAAISTRPEDIERAAALIEAGVDVLVVDSS--Q-----G--------NSIYQIDMIKKLKSNYPHVDIIAG--NV 290 (495)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecC--C-----C--------CchHHHHHHHHHHhhCCCceEEEC--Cc
Confidence 34444 45566788888888888999999999963 1 1 2234567788888775 6777775 11
Q ss_pred CChhhHHHHHHHHHHcCccEEEec---cCccccc-CCCCCccCHHHHHHHH---hhCCCcEEEccCCCCHHHHHHHHHhc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVH---GRTRDEK-DGKKFRADWNAIKAVK---NALRIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VH---gRt~~~~-~~~~g~ad~~~i~~ik---~~~~iPVianGGI~s~eda~~~l~~t 308 (436)
.+ .+-++.+.++|+|+|.|- |.++... ....|.+.+..+..++ +..++|||+.|||.++.|+.+++..
T Consensus 291 ~t----~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~- 365 (495)
T PTZ00314 291 VT----ADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALAL- 365 (495)
T ss_pred CC----HHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHc-
Confidence 22 234667889999999762 2222111 1112234555554444 4458999999999999999999996
Q ss_pred CcceeeeehHHhhC
Q 013813 309 GCEGVLSAESLLEN 322 (436)
Q Consensus 309 GaDgVmIGRgal~n 322 (436)
|||+||+|+.+..-
T Consensus 366 GA~~Vm~G~~~a~~ 379 (495)
T PTZ00314 366 GADCVMLGSLLAGT 379 (495)
T ss_pred CCCEEEECchhccc
Confidence 99999999987553
No 117
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.68 E-value=4.9e-08 Score=92.89 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=80.2
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+++++|+...+.|+|.|++-..|+.... . ..+++.++++++.+.||+...|||+|.+|+.++|.. |||-|.|.
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~~g-r--~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~a-GADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASSEG-R--ETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRA-GADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEeccccccc-c--hhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHc-CCCeeeeC
Confidence 4568899999999999999999888876422 1 467899999999999999999999999999999996 99999999
Q ss_pred hHHhhCCccchhhh
Q 013813 317 ESLLENPALFAGFR 330 (436)
Q Consensus 317 Rgal~nP~lf~~i~ 330 (436)
++++.||.+..++.
T Consensus 104 saAv~~p~lI~~~a 117 (256)
T COG0107 104 SAAVKDPELITEAA 117 (256)
T ss_pred hhHhcChHHHHHHH
Confidence 99999999988765
No 118
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.66 E-value=1.2e-06 Score=88.32 Aligned_cols=191 Identities=15% Similarity=0.154 Sum_probs=124.1
Q ss_pred CcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc--
Q 013813 103 PKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE-- 180 (436)
Q Consensus 103 ~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~-- 180 (436)
-|++-|+|-.+++..+-....++|.-.+.=-+++.... ..+.+. .+. .....+.|.+ |-.++++.++.++++
T Consensus 47 iPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~~e~~---~~fv~~-~~~-~~~~~~~vav-G~~~~d~er~~~L~~~~ 120 (346)
T PRK05096 47 VPIIAANMDTVGTFEMAKALASFDILTAVHKHYSVEEW---AAFVNN-SSA-DVLKHVMVST-GTSDADFEKTKQILALS 120 (346)
T ss_pred CceEecCCCccccHHHHHHHHHCCCeEEEecCCCHHHH---HHHHHh-ccc-cccceEEEEe-cCCHHHHHHHHHHHhcC
Confidence 49999999999999777766666653322221211111 111100 110 1113455644 556788999998887
Q ss_pred CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 181 PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 181 ~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
+++|.|-|... .| +-+.+.++++.+++.. +++|.+. +.. +.+-++.|.++|+|.|-|-
T Consensus 121 ~g~D~iviD~A-------hG--------hs~~~i~~ik~ik~~~P~~~vIaG-----NV~-T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 121 PALNFICIDVA-------NG--------YSEHFVQFVAKAREAWPDKTICAG-----NVV-TGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCCCEEEEECC-------CC--------cHHHHHHHHHHHHHhCCCCcEEEe-----ccc-CHHHHHHHHHcCCCEEEEc
Confidence 48899888732 11 3477889999999876 5777665 222 2346778889999999762
Q ss_pred ---c---CcccccCCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 260 ---G---RTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 260 ---g---Rt~~~~~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
| -|+. ..+-|.+.+..|.++++ ..++|||+-|||.+.-|+.+.|.. |||.||+|+-+-..-
T Consensus 180 IGpGSiCtTr~--vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaa-GAd~VMlGsllAGt~ 249 (346)
T PRK05096 180 IGPGSVCTTRV--KTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGG-GADFVMLGGMLAGHE 249 (346)
T ss_pred ccCCccccCcc--ccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHc-CCCEEEeChhhcCcc
Confidence 1 2221 11223445666665554 458999999999999999999986 999999997664433
No 119
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.66 E-value=4.7e-07 Score=88.40 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=107.0
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCC----hHHHHHHHHHH-hcccCccEEEEe-
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN----LPLVKSLVEKL-ALNLNVPVSCKI- 232 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~----p~~v~eIv~av-~~~~~iPVsVKi- 232 (436)
.+-+|++|.=- . .++.+.++.|++.|-|| +.+.++ |+++.++.+.. .+.+-+-+.+|.
T Consensus 76 ~~~v~vGGGIr-~-e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~ 139 (253)
T TIGR02129 76 PGGLQVGGGIN-D-TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT 139 (253)
T ss_pred CCCEEEeCCcC-H-HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc
Confidence 36688888764 3 66667888999998886 334444 88999999988 344333333331
Q ss_pred -----cc---CCC---hhhHH-HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHH
Q 013813 233 -----RV---FPN---LQDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 300 (436)
Q Consensus 233 -----Rl---g~~---~~d~~-~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~ed 300 (436)
++ ||. .-+.. ++++.+++. +..|.++...++++.. .+|++.++++++.+++|||++|||.|.+|
T Consensus 140 ~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~---G~dlel~~~l~~~~~ipVIASGGv~s~eD 215 (253)
T TIGR02129 140 QDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCK---GIDEELVSKLGEWSPIPITYAGGAKSIDD 215 (253)
T ss_pred CCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCccc---cCCHHHHHHHHhhCCCCEEEECCCCCHHH
Confidence 11 332 22556 889999998 9999999998887654 47999999999999999999999999999
Q ss_pred HHHHHHh-cCcceeeeehHHhh
Q 013813 301 VQKCLEE-TGCEGVLSAESLLE 321 (436)
Q Consensus 301 a~~~l~~-tGaDgVmIGRgal~ 321 (436)
+.++.+. .|..++.+|++++.
T Consensus 216 i~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 216 LDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHhcCCCCcEEeeehHHH
Confidence 9987332 26777999999865
No 120
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.66 E-value=6.3e-07 Score=95.89 Aligned_cols=136 Identities=17% Similarity=0.181 Sum_probs=98.7
Q ss_pred cCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHH
Q 013813 165 CANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 165 ~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~ 243 (436)
.|-.++.+.++..++++|+|.|-|.+ ++ | +...+.+.++++++.. +.+|.++ +... .+
T Consensus 243 vg~~~~~~~r~~~l~~ag~d~i~iD~--~~-----g--------~~~~~~~~i~~ik~~~p~~~vi~g-----~v~t-~e 301 (505)
T PLN02274 243 IGTRESDKERLEHLVKAGVDVVVLDS--SQ-----G--------DSIYQLEMIKYIKKTYPELDVIGG-----NVVT-MY 301 (505)
T ss_pred EcCCccHHHHHHHHHHcCCCEEEEeC--CC-----C--------CcHHHHHHHHHHHHhCCCCcEEEe-----cCCC-HH
Confidence 56667888888899999999988865 32 1 2345668889998876 5788777 2222 33
Q ss_pred HHHHHHHcCccEEEec--cCc-cccc----CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 244 YAKMLEDAGCSLLAVH--GRT-RDEK----DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 244 ~ak~le~aG~d~I~VH--gRt-~~~~----~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
-++.+.++|+|.|.|. ... +... .+.+....+..+.++.+..++|||+-|||.+..|+.++|.. ||++||+|
T Consensus 302 ~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~-GA~~V~vG 380 (505)
T PLN02274 302 QAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTL-GASTVMMG 380 (505)
T ss_pred HHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEc
Confidence 4777889999999773 221 1110 11112235566788888889999999999999999999996 99999999
Q ss_pred hHHhhC
Q 013813 317 ESLLEN 322 (436)
Q Consensus 317 Rgal~n 322 (436)
+.+..-
T Consensus 381 s~~~~t 386 (505)
T PLN02274 381 SFLAGT 386 (505)
T ss_pred hhhccc
Confidence 887653
No 121
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.65 E-value=9.5e-08 Score=91.96 Aligned_cols=89 Identities=22% Similarity=0.344 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++++.+++.|++.|+++........ ...+++.++++++.+++||+++|||++.++++++++. |+++|++|++
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~---~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~-G~~~vilg~~ 105 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRG---REPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSL-GADKVSINTA 105 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccC---CCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHc-CCCEEEEChh
Confidence 47889999999999999999988775432 2578999999999999999999999999999998875 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 106 ~l~~~~~~~~~~~ 118 (232)
T TIGR03572 106 ALENPDLIEEAAR 118 (232)
T ss_pred HhcCHHHHHHHHH
Confidence 9999999888764
No 122
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.62 E-value=1e-06 Score=85.16 Aligned_cols=141 Identities=19% Similarity=0.246 Sum_probs=98.9
Q ss_pred EEEEecC-CCHHHHHHHHHHHcC--CCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 160 LFVQFCA-NDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 160 livQL~g-~d~e~~~~AA~~v~~--g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
+..+-.| .+.++....|++..+ +.|.|-|-. |.| -.|+.|+....+-.+.+.+. ++-|..= .
T Consensus 65 ~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~Llpd~~~tv~aa~~L~~~-Gf~vlpy--c- 130 (248)
T cd04728 65 LLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFTVLPY--C- 130 (248)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCc----------cccccCHHHHHHHHHHHHHC-CCEEEEE--e-
Confidence 3344333 578888888887755 457777763 222 24666666655555554322 2222211 1
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+-...++.++++|++.|-.+|..... ..|..+.++|+.+++..++|||+.|||.+++|+.++++. |||+|++
T Consensus 131 ---~dd~~~ar~l~~~G~~~vmPlg~pIGs---g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Amel-GAdgVlV 203 (248)
T cd04728 131 ---TDDPVLAKRLEDAGCAAVMPLGSPIGS---GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMEL-GADAVLL 203 (248)
T ss_pred ---CCCHHHHHHHHHcCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEE
Confidence 112456899999999999777766553 234567999999999889999999999999999999996 9999999
Q ss_pred ehHHhh
Q 013813 316 AESLLE 321 (436)
Q Consensus 316 GRgal~ 321 (436)
|.++..
T Consensus 204 ~SAIt~ 209 (248)
T cd04728 204 NTAIAK 209 (248)
T ss_pred ChHhcC
Confidence 999863
No 123
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.62 E-value=6.2e-07 Score=88.09 Aligned_cols=159 Identities=17% Similarity=0.209 Sum_probs=103.3
Q ss_pred CEEEEecCC--CHHHHHHHHHHH-cCCCcEEEEec--CCCc--hhhhcCccccccc--CChHHHHHHHHHHhcc-cCccE
Q 013813 159 PLFVQFCAN--DPEILLNAARRV-EPYCDYVDINL--GCPQ--RIARRGNYGAFLM--DNLPLVKSLVEKLALN-LNVPV 228 (436)
Q Consensus 159 plivQL~g~--d~e~~~~AA~~v-~~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~-~~iPV 228 (436)
.++.=|... +.+...++++.+ +.|+|.|||-+ .-|. +.+....+--+|. -+.+.+.++++++++. .++|+
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~pl 90 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPI 90 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 455555544 667788888654 66899999985 4454 1111111111121 2456788999999876 68886
Q ss_pred EEEeccCCCh---hhHHHHHHHHHHcCccEEEeccCc--------------------------c-----------c----
Q 013813 229 SCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRT--------------------------R-----------D---- 264 (436)
Q Consensus 229 sVKiRlg~~~---~d~~~~ak~le~aG~d~I~VHgRt--------------------------~-----------~---- 264 (436)
..= ...+. -...+|++.+.++|++.|++|.=. . .
T Consensus 91 v~m--~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy 168 (256)
T TIGR00262 91 GLL--TYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVY 168 (256)
T ss_pred EEE--EeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEE
Confidence 522 11111 123567777888888888774311 0 0
Q ss_pred --ccCCCCC------ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 265 --EKDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 265 --~~~~~~g------~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
...+.+| +...+.++++++.++.||+..|||+|++++.++++. |||+|++|++++
T Consensus 169 ~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~-GADgvVvGSaiv 231 (256)
T TIGR00262 169 LVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDA-GADGVIVGSAIV 231 (256)
T ss_pred EEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHc-CCCEEEECHHHH
Confidence 0011222 124678889999889999999999999999998886 999999999985
No 124
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.60 E-value=1.4e-06 Score=92.24 Aligned_cols=141 Identities=20% Similarity=0.168 Sum_probs=100.5
Q ss_pred ecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHH
Q 013813 164 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 164 L~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~ 242 (436)
-.+-.++.+.++..+++.|+|.|.|++.- | +-+.+.+.++++++.. ++||.++ -..+ .
T Consensus 218 av~~~~~~~~r~~~L~~aG~d~I~vd~a~----------g-----~~~~~~~~i~~i~~~~~~~~vi~G--~v~t----~ 276 (450)
T TIGR01302 218 AVGTREFDKERAEALVKAGVDVIVIDSSH----------G-----HSIYVIDSIKEIKKTYPDLDIIAG--NVAT----A 276 (450)
T ss_pred EecCchhHHHHHHHHHHhCCCEEEEECCC----------C-----cHhHHHHHHHHHHHhCCCCCEEEE--eCCC----H
Confidence 44556788888888899999999998532 1 2245778888888874 7999997 2222 2
Q ss_pred HHHHHHHHcCccEEEec--cC-ccccc-CCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 243 KYAKMLEDAGCSLLAVH--GR-TRDEK-DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VH--gR-t~~~~-~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+-++.+.++|+|+|.|. +. ++..+ ...-|.+.+..+.++++ ..++|||+.|||+++.|+.++|.. ||++||+
T Consensus 277 ~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~-GA~~V~~ 355 (450)
T TIGR01302 277 EQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAA-GADAVML 355 (450)
T ss_pred HHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEE
Confidence 34677788999999763 21 11111 11122345566666654 358999999999999999999997 9999999
Q ss_pred ehHHhhCCccc
Q 013813 316 AESLLENPALF 326 (436)
Q Consensus 316 GRgal~nP~lf 326 (436)
|+.+..-.+..
T Consensus 356 G~~~a~~~e~p 366 (450)
T TIGR01302 356 GSLLAGTTESP 366 (450)
T ss_pred CchhhcCCcCC
Confidence 98886665543
No 125
>PLN02591 tryptophan synthase
Probab=98.55 E-value=1.5e-06 Score=85.11 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHH-HcCCCcEEEEec--CCCc--hhhhcCccccccc--CChHHHHHHHHHHhcccCccEEEEeccCCCh-
Q 013813 167 NDPEILLNAARR-VEPYCDYVDINL--GCPQ--RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPVSCKIRVFPNL- 238 (436)
Q Consensus 167 ~d~e~~~~AA~~-v~~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~- 238 (436)
.|.+...+.++. ++.|+|.|||-+ .-|. +.+.....--+|. -+.+.+.++++++++..++|+.+= ...+.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm--~Y~N~i 90 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLF--TYYNPI 90 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE--ecccHH
Confidence 467888888875 466999999985 4455 1111111111222 245678889999987778886532 22221
Q ss_pred --hhHHHHHHHHHHcCccEEEec--------------------------cCccc-----------------ccCCCCC--
Q 013813 239 --QDTIKYAKMLEDAGCSLLAVH--------------------------GRTRD-----------------EKDGKKF-- 271 (436)
Q Consensus 239 --~d~~~~ak~le~aG~d~I~VH--------------------------gRt~~-----------------~~~~~~g-- 271 (436)
-...+|++.+.++|++++++. .-+.. ...+-+|
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~ 170 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR 170 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC
Confidence 133456666777777776661 11100 0011111
Q ss_pred ---ccCH-HHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 272 ---RADW-NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 272 ---~ad~-~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+.+. +.++.+|+..++||+..-||+++++++++++. |||||.+|+++++
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~-GADGvIVGSalVk 223 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGW-GADGVIVGSAMVK 223 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhc-CCCEEEECHHHHH
Confidence 2233 45888999889999999999999999998875 9999999999873
No 126
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.54 E-value=3.1e-07 Score=88.15 Aligned_cols=89 Identities=27% Similarity=0.419 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++++.+++.|++.+++........ + ...+++.++++++.+++||++.|||.+.+|++++++. |||+|++|++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~-g--~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~-Ga~~vilg~~ 105 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKA-G--KPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDA-GVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc-C--CcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHc-CCCEEEECch
Confidence 4788999999999999999987643211 1 1478999999999999999999999999999999986 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.+|.++.++..
T Consensus 106 ~l~~~~~l~ei~~ 118 (233)
T PRK00748 106 AVKNPELVKEACK 118 (233)
T ss_pred HHhCHHHHHHHHH
Confidence 9999998887654
No 127
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.54 E-value=2.7e-06 Score=82.41 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=97.5
Q ss_pred CEEEEecC-CCHHHHHHHHHHHcC--CCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 159 PLFVQFCA-NDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 159 plivQL~g-~d~e~~~~AA~~v~~--g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
.+..+-.| .+.++....|++..+ +.+.|-|-. |.|. .++.|+....+-.+.+.+. ++-|.-= .
T Consensus 64 ~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~----------~llpd~~~tv~aa~~L~~~-Gf~vlpy--c 130 (250)
T PRK00208 64 TLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDK----------TLLPDPIETLKAAEILVKE-GFVVLPY--C 130 (250)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCC----------CCCcCHHHHHHHHHHHHHC-CCEEEEE--e
Confidence 34444433 578888999988755 457777763 2222 3555555554444444221 2222211 1
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+-..+++.++++|++.|-.+|..... ..|..+.++++.+++..++|||+.|||.+++|+.++++. |||+|+
T Consensus 131 ----~~d~~~ak~l~~~G~~~vmPlg~pIGs---g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Amel-GAdgVl 202 (250)
T PRK00208 131 ----TDDPVLAKRLEEAGCAAVMPLGAPIGS---GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMEL-GADAVL 202 (250)
T ss_pred ----CCCHHHHHHHHHcCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEE
Confidence 122456899999999999776666552 234567899999999889999999999999999999996 999999
Q ss_pred eehHHhh
Q 013813 315 SAESLLE 321 (436)
Q Consensus 315 IGRgal~ 321 (436)
+|.|+..
T Consensus 203 V~SAItk 209 (250)
T PRK00208 203 LNTAIAV 209 (250)
T ss_pred EChHhhC
Confidence 9999864
No 128
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.53 E-value=8.8e-07 Score=84.38 Aligned_cols=133 Identities=26% Similarity=0.442 Sum_probs=90.1
Q ss_pred HHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 177 RRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 177 ~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
+++++ |+-+|--=---|..+...| |-+-|.||..+++|+.++ .+||..|.|+|.-.+ |+.|++.|+|+
T Consensus 34 ~IAE~aGAvAVMaLervPaDiR~aG--GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~~E-----A~iLealgVD~ 102 (296)
T COG0214 34 RIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIEEIMDAV----SIPVMAKVRIGHFVE-----AQILEALGVDM 102 (296)
T ss_pred HHHHhcCceeEeehhhCcHHHHhcc--CccccCCHHHHHHHHHhc----ccceeeeeecchhHH-----HHHHHHhCCCc
Confidence 34433 5433322223566654444 788999999999888764 699999999986422 77889999998
Q ss_pred EEe-----------c------------c------------------CcccccCC--------------------------
Q 013813 256 LAV-----------H------------G------------------RTRDEKDG-------------------------- 268 (436)
Q Consensus 256 I~V-----------H------------g------------------Rt~~~~~~-------------------------- 268 (436)
|.= | | ||+.+...
T Consensus 103 IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~ed 182 (296)
T COG0214 103 IDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTED 182 (296)
T ss_pred cccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHH
Confidence 842 1 0 22211100
Q ss_pred ------CCCccCHHHHHHHHhhCCCcE--EEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 269 ------KKFRADWNAIKAVKNALRIPV--LANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 269 ------~~g~ad~~~i~~ik~~~~iPV--ianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
....+-++++..+++.-.+|| ++.|||-|+.|+.-+++. |||||.+|+|+++
T Consensus 183 el~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~L-GadGVFVGSGIFK 242 (296)
T COG0214 183 ELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQL-GADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHh-CCCeEEecccccC
Confidence 000123566677777667887 699999999999999986 9999999999754
No 129
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.52 E-value=1.5e-06 Score=85.62 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=104.8
Q ss_pred CCCEEEEecCC--CHHHHHHHHHHH-cCCCcEEEEec--CCCc--hhhhcCcccccccC--ChHHHHHHHHHHhcccCcc
Q 013813 157 DRPLFVQFCAN--DPEILLNAARRV-EPYCDYVDINL--GCPQ--RIARRGNYGAFLMD--NLPLVKSLVEKLALNLNVP 227 (436)
Q Consensus 157 e~plivQL~g~--d~e~~~~AA~~v-~~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll~--~p~~v~eIv~av~~~~~iP 227 (436)
+..++.=|... +.+...+.++.+ +.|+|.|||-+ .-|. +.+....+--+|.+ +.+.+.++++++++..++|
T Consensus 14 ~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 14 QCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 33566666555 567788877654 66899999984 4555 11111111122222 4567888999998878888
Q ss_pred EEEEeccCCCh---hhHHHHHHHHHHcCccEEEeccCc--------------------------c-----------c---
Q 013813 228 VSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRT--------------------------R-----------D--- 264 (436)
Q Consensus 228 VsVKiRlg~~~---~d~~~~ak~le~aG~d~I~VHgRt--------------------------~-----------~--- 264 (436)
+.+= ...+. -...+|++.+.++|+|++++|.=. . .
T Consensus 94 ~vlm--~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFI 171 (263)
T CHL00200 94 IVIF--TYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCI 171 (263)
T ss_pred EEEE--ecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcE
Confidence 6432 22221 133567778888888888874310 0 0
Q ss_pred ---ccCCCCCc-----c-CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 265 ---EKDGKKFR-----A-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 265 ---~~~~~~g~-----a-d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
...+.+|. . --++++.+++.+++||...+||+++++++++.+. |||||.+|++++.
T Consensus 172 Y~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~-GADGvVVGSalv~ 236 (263)
T CHL00200 172 YLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGW-NINGIVIGSACVQ 236 (263)
T ss_pred EEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhc-CCCEEEECHHHHH
Confidence 00111121 1 1355778888889999999999999999998875 9999999999965
No 130
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.51 E-value=1.8e-06 Score=83.97 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCccccccc----------CChHHHHHHHHHHhcccCccEEE--Eec
Q 013813 167 NDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLM----------DNLPLVKSLVEKLALNLNVPVSC--KIR 233 (436)
Q Consensus 167 ~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll----------~~p~~v~eIv~av~~~~~iPVsV--KiR 233 (436)
.+.+.+.+.++.++. |+|.|||++ |...-.-+ |-.+. -+.+...++++.+++.+++|+.+ +..
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~D--G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n 86 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVAD--GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN 86 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 456788888877655 899999996 44221111 11111 12457788999999887888655 432
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEecc--------------------------Ccc--------c---c------cCCCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHG--------------------------RTR--------D---E------KDGKK 270 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHg--------------------------Rt~--------~---~------~~~~~ 270 (436)
.-.. ....+|++.+.++|+++|+++. -|. . . ..+..
T Consensus 87 ~~~~-~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~t 165 (242)
T cd04724 87 PILQ-YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVT 165 (242)
T ss_pred HHHH-hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCC
Confidence 2100 0124567777778888777721 000 0 0 01111
Q ss_pred C------ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 271 F------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 271 g------~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
| ....+.++++++..++||+..|||++.+++.++.+. ||+|.+|+++..
T Consensus 166 G~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~--ADgvVvGSaiv~ 220 (242)
T cd04724 166 GARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY--ADGVIVGSALVK 220 (242)
T ss_pred CCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc--CCEEEECHHHHH
Confidence 1 112467888888889999999999999999998874 999999988753
No 131
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.49 E-value=9.3e-07 Score=90.62 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=79.1
Q ss_pred CChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR- 286 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~- 286 (436)
.+|-.+.+.+..+++.+..|+.+| ......+ ++.+-..|+++|.+......+. ..+....+.+.++++.++
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~k-----GV~~~~D-~~~a~~tg~~~I~vsnhggrql--D~g~st~~~L~ei~~av~~ 272 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLK-----GILAPED-AAGAGGTGADGIEVSNHGGRQL--DWGISTADSLPEIVEAVGD 272 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHh-----CCCCHHH-HHhhccCCceEEEEEcCCCccc--cCCCChHHHHHHHHHHhCC
Confidence 567777777788887777888777 2233334 4556678999998843222222 223566788999999885
Q ss_pred -CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 287 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 287 -iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
++|++.|||++..|+.+++.. |||+|++||.+|.
T Consensus 273 ~~~vi~dGGiR~G~Dv~KAlAL-GA~~v~igrp~L~ 307 (360)
T COG1304 273 RIEVIADGGIRSGLDVAKALAL-GADAVGIGRPFLY 307 (360)
T ss_pred CeEEEecCCCCCHHHHHHHHHh-CCchhhhhHHHHH
Confidence 999999999999999999997 9999999998875
No 132
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=98.47 E-value=2.6e-06 Score=84.16 Aligned_cols=101 Identities=27% Similarity=0.318 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcE
Q 013813 212 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 289 (436)
Q Consensus 212 ~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPV 289 (436)
+-=+=++++++.++.|+.+|==+ +-+| |+.+.++|+++|+|...-.-|. ...++..+.+.++.+++ ++||
T Consensus 210 l~W~Di~wLr~~T~LPIvvKGil--t~eD----A~~Ave~G~~GIIVSNHGgRQl--D~vpAtI~~L~Evv~aV~~ri~V 281 (363)
T KOG0538|consen 210 LSWKDIKWLRSITKLPIVVKGVL--TGED----ARKAVEAGVAGIIVSNHGGRQL--DYVPATIEALPEVVKAVEGRIPV 281 (363)
T ss_pred CChhhhHHHHhcCcCCeEEEeec--ccHH----HHHHHHhCCceEEEeCCCcccc--CcccchHHHHHHHHHHhcCceEE
Confidence 33455788888899999999222 2233 5667789999999943222222 22378889999999988 6999
Q ss_pred EEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 290 LANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 290 ianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+.-|||++..|+.++|.. ||.+|.|||.++.
T Consensus 282 ~lDGGVR~G~DVlKALAL-GAk~VfiGRP~v~ 312 (363)
T KOG0538|consen 282 FLDGGVRRGTDVLKALAL-GAKGVFIGRPIVW 312 (363)
T ss_pred EEecCcccchHHHHHHhc-ccceEEecCchhe
Confidence 999999999999999986 9999999996654
No 133
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.46 E-value=3.6e-06 Score=81.01 Aligned_cols=125 Identities=17% Similarity=0.257 Sum_probs=91.1
Q ss_pred HHHHHHcCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe---ccCCChhhHHHHHHHH
Q 013813 174 NAARRVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI---RVFPNLQDTIKYAKML 248 (436)
Q Consensus 174 ~AA~~v~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi---Rlg~~~~d~~~~ak~l 248 (436)
++.+.+++|+|.||+ |.|++ .-.+.+.+.+-+.++++.+ .|+.+|+ -...+.++....++.+
T Consensus 79 e~~~Ai~~GA~EiD~Vin~~~~------------~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~ 145 (221)
T PRK00507 79 EAKDAIANGADEIDMVINIGAL------------KSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIA 145 (221)
T ss_pred HHHHHHHcCCceEeeeccHHHh------------cCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHH
Confidence 444567789999886 44443 3345778888888887765 4677887 2234556778889999
Q ss_pred HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 249 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++|+|+|-..-... .+.+..+.++.+++.+ +++|.++|||+|.+++.++++. ||+.+...++
T Consensus 146 ~~agadfIKTsTG~~------~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~a-GA~riGtS~~ 210 (221)
T PRK00507 146 KEAGADFVKTSTGFS------TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEA-GATRLGTSAG 210 (221)
T ss_pred HHhCCCEEEcCCCCC------CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHc-CcceEccCcH
Confidence 999999774421111 2246778888888876 4999999999999999999997 9998766544
No 134
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.46 E-value=6e-07 Score=86.76 Aligned_cols=90 Identities=27% Similarity=0.400 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+..++++.+.+.|++.|++-...... .+ ...+++.++++.+..++|++.+|||+|.++++.+++. |||+|++|+.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~-~~--~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~-Ga~~v~iGs~ 107 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAF-EG--ERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDL-GVDRVILGTA 107 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhh-cC--CcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHc-CCCEEEEChH
Confidence 467889999999999998664333211 11 1467899999999999999999999999999999985 9999999999
Q ss_pred HhhCCccchhhhhh
Q 013813 319 LLENPALFAGFRTA 332 (436)
Q Consensus 319 al~nP~lf~~i~~~ 332 (436)
++.+|+++.++...
T Consensus 108 ~~~~~~~~~~i~~~ 121 (241)
T PRK13585 108 AVENPEIVRELSEE 121 (241)
T ss_pred HhhChHHHHHHHHH
Confidence 99999999887643
No 135
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.45 E-value=8.5e-06 Score=79.97 Aligned_cols=133 Identities=15% Similarity=0.141 Sum_probs=105.3
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+...+...+++++.+.++ .++.|+..+.+++| .+++.-.++++++++.+ ++.+.+..+-
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDan~ 138 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDANR 138 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 34555566667888777765 45679999999875 12456667888888876 4678888777
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.++++++++.+++.|+++|.- . .. ..|++..+++++.+++||.+.+.+.+.+++.++++...+|.|+
T Consensus 139 ~~~~~~a~~~~~~l~~~~i~~iEe-------P--~~-~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ 208 (265)
T cd03315 139 GWTPKQAIRALRALEDLGLDYVEQ-------P--LP-ADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVN 208 (265)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEC-------C--CC-cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEE
Confidence 899999999999999999988832 1 11 3478889999999999999999999999999999987899987
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 209 ~k 210 (265)
T cd03315 209 IK 210 (265)
T ss_pred Ee
Confidence 64
No 136
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.42 E-value=4.1e-06 Score=78.80 Aligned_cols=147 Identities=16% Similarity=0.258 Sum_probs=94.9
Q ss_pred EEEecCCCHHHHHHHHHHHcC-CCcEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccE--EEEeccCC
Q 013813 161 FVQFCANDPEILLNAARRVEP-YCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPV--SCKIRVFP 236 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~-g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPV--sVKiRlg~ 236 (436)
.++|...|++.+.+.++.+.+ |+|.|++- +.+|.- ++...-.++++++++..+.|+ -++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~------------~~~~~~~~~v~~i~~~~~~~v~v~lm~~--- 66 (210)
T TIGR01163 2 APSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFV------------PNLTFGPPVLEALRKYTDLPIDVHLMVE--- 66 (210)
T ss_pred cchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC------------CCcccCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 467888899999999987755 89999997 333331 111233455666665555664 34433
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCccc---------------------c-----c-----------------CCCCC-c
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRD---------------------E-----K-----------------DGKKF-R 272 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~---------------------~-----~-----------------~~~~g-~ 272 (436)
+..++++.+.++|+|+|++|+...+ . . .+.+| .
T Consensus 67 ---~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~ 143 (210)
T TIGR01163 67 ---NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQK 143 (210)
T ss_pred ---CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCccc
Confidence 2345677777888888888764210 0 0 01111 2
Q ss_pred cCHHH---HHHHHhhC-----CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 273 ADWNA---IKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 273 ad~~~---i~~ik~~~-----~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
.+|.. ++++++.+ ++||++.|||+ .+.+.++++ +|+|+|.+|++++..++.-.
T Consensus 144 ~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~-~gad~iivgsai~~~~d~~~ 204 (210)
T TIGR01163 144 FIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAE-AGADILVAGSAIFGADDYKE 204 (210)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHH-cCCCEEEEChHHhCCCCHHH
Confidence 23433 44444433 37999999996 799999886 59999999999988776443
No 137
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.40 E-value=5.9e-06 Score=81.30 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=99.0
Q ss_pred CEEEEecCC--CHHHHHHHHHHH-cCCCcEEEEec--CCCc--hhhhcCcccccccC--ChHHHHHHHHHHh-cccCccE
Q 013813 159 PLFVQFCAN--DPEILLNAARRV-EPYCDYVDINL--GCPQ--RIARRGNYGAFLMD--NLPLVKSLVEKLA-LNLNVPV 228 (436)
Q Consensus 159 plivQL~g~--d~e~~~~AA~~v-~~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll~--~p~~v~eIv~av~-~~~~iPV 228 (436)
.++.=+... +.+...++++.+ +.|+|.|||-+ .-|. +.+....+--+|.+ +.+.+.+++++++ +..++|+
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~ 92 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPI 92 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 456555544 667888888654 56899999985 4454 11111111122222 4567788888988 5567887
Q ss_pred EEEeccCCCh---hhHHHHHHHHHHcCccEEEec--------------------------cCccc---------------
Q 013813 229 SCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVH--------------------------GRTRD--------------- 264 (436)
Q Consensus 229 sVKiRlg~~~---~d~~~~ak~le~aG~d~I~VH--------------------------gRt~~--------------- 264 (436)
.+= ...+. -...+|++.+.++|+++++|. .-+..
T Consensus 93 vlm--~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY 170 (258)
T PRK13111 93 VLM--TYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVY 170 (258)
T ss_pred EEE--ecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 533 21111 123456666666666666651 11100
Q ss_pred --ccCCCCC-----ccC-HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 265 --EKDGKKF-----RAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 265 --~~~~~~g-----~ad-~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
...+.+| +.+ .+.++.+++..++||+..+||++.+++.++++ +||||.+|++++.
T Consensus 171 ~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~--~ADGviVGSaiv~ 233 (258)
T PRK13111 171 YVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA--VADGVIVGSALVK 233 (258)
T ss_pred EEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH--hCCEEEEcHHHHH
Confidence 0011111 122 35889999988999999999999999999886 4999999999873
No 138
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.40 E-value=1e-06 Score=85.68 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+.+.|++.|++-.-.... + ...+.+.++++.+.+++||.+.|||+|.+|+++++.. ||+.|.+|.+
T Consensus 32 ~dp~~~a~~~~~~g~~~l~ivDLd~~~--g--~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~-Ga~kvviGs~ 106 (241)
T PRK14024 32 GSPLDAALAWQRDGAEWIHLVDLDAAF--G--RGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALAT-GCARVNIGTA 106 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeccccC--C--CCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHC-CCCEEEECch
Confidence 378899999999999999987655432 2 2467899999999999999999999999999999986 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 107 ~l~~p~l~~~i~~ 119 (241)
T PRK14024 107 ALENPEWCARVIA 119 (241)
T ss_pred HhCCHHHHHHHHH
Confidence 9999999988764
No 139
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.40 E-value=6.8e-06 Score=77.48 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=60.0
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
.++.+++.|+|+|.++...............|+.++++++.+++||++.||| +++++.++++ .|+|+|++|++++..+
T Consensus 107 ~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~-~Ga~gvav~s~i~~~~ 184 (201)
T PRK07695 107 EAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLA-AGVSGIAVMSGIFSSA 184 (201)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEHHHhcCC
Confidence 3667888999999764322221111112357899999999899999999999 8999999998 5999999999998643
Q ss_pred c
Q 013813 324 A 324 (436)
Q Consensus 324 ~ 324 (436)
.
T Consensus 185 ~ 185 (201)
T PRK07695 185 N 185 (201)
T ss_pred C
Confidence 3
No 140
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.40 E-value=1.5e-06 Score=85.43 Aligned_cols=89 Identities=18% Similarity=0.332 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+.+.|++.|++..-.+..... ..+++.++++.+.+++||++.|||++.+|+++++.. |+++|.+|++
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~---~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~-G~~~vvigs~ 105 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGS---EPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSL-GVEKVSINTA 105 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCC---cccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHC-CCCEEEEChH
Confidence 488899999999999999997665553222 468999999999999999999999999999999975 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.+|.++.++..
T Consensus 106 ~~~~~~~~~~~~~ 118 (258)
T PRK01033 106 ALEDPDLITEAAE 118 (258)
T ss_pred HhcCHHHHHHHHH
Confidence 9999999888754
No 141
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.39 E-value=7.3e-06 Score=83.69 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=111.5
Q ss_pred CCCCEEEEecCC--CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEE
Q 013813 156 EDRPLFVQFCAN--DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSC 230 (436)
Q Consensus 156 ~e~plivQL~g~--d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsV 230 (436)
...|+...+.+. +++++.++++. .+.||+.|.|.+|.... +.++++...++++++++.+ ++++.+
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~----------~~~~~~~d~~~v~~ir~~~g~~~~l~v 194 (357)
T cd03316 125 DRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDS----------GGEDLREDLARVRAVREAVGPDVDLMV 194 (357)
T ss_pred CceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCc----------chHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 345566666555 58999888865 46799999999874321 1166788889999999887 578888
Q ss_pred EeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGa 310 (436)
...-+++.++++++++.+++.|+.+|- +.. . ..+++..+.+++.+++||++.+.+.+++++.++++...+
T Consensus 195 DaN~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~--~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~ 264 (357)
T cd03316 195 DANGRWDLAEAIRLARALEEYDLFWFE-------EPV-P--PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV 264 (357)
T ss_pred ECCCCCCHHHHHHHHHHhCccCCCeEc-------CCC-C--ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCC
Confidence 887789999999999999999887763 111 1 236888999999999999999999999999999998789
Q ss_pred ceeeee
Q 013813 311 EGVLSA 316 (436)
Q Consensus 311 DgVmIG 316 (436)
|.|.+-
T Consensus 265 d~v~~k 270 (357)
T cd03316 265 DIIQPD 270 (357)
T ss_pred CEEecC
Confidence 988754
No 142
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.38 E-value=5.6e-06 Score=88.61 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE 249 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le 249 (436)
+.+..+..+++.|+|.|+|. +.+. ..+.+.+.++++++..+.++.|+ .|. .. +.+-++.+.
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd--~a~g-------------~~~~~~~~i~~ir~~~~~~~~V~--aGn-V~-t~e~a~~li 302 (502)
T PRK07107 242 DYAERVPALVEAGADVLCID--SSEG-------------YSEWQKRTLDWIREKYGDSVKVG--AGN-VV-DREGFRYLA 302 (502)
T ss_pred hHHHHHHHHHHhCCCeEeec--Cccc-------------ccHHHHHHHHHHHHhCCCCceEE--ecc-cc-CHHHHHHHH
Confidence 45666667888899999986 2221 13455788888888776556666 321 11 123356677
Q ss_pred HcCccEEEe--ccCcc-ccc-CCCCCccCHHHHHHHHhhC-------C--CcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 250 DAGCSLLAV--HGRTR-DEK-DGKKFRADWNAIKAVKNAL-------R--IPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 250 ~aG~d~I~V--HgRt~-~~~-~~~~g~ad~~~i~~ik~~~-------~--iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++|+|+|.| |+... ..+ ....|.+.+..+.++++.. + +|||+-|||++..|+.++|.. |||+||+|
T Consensus 303 ~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~-GA~~vm~G 381 (502)
T PRK07107 303 EAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAM-GADFIMLG 381 (502)
T ss_pred HcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHc-CCCeeeeC
Confidence 899999987 33311 111 1223455677777776643 3 899999999999999999986 99999999
Q ss_pred hHHhhC
Q 013813 317 ESLLEN 322 (436)
Q Consensus 317 Rgal~n 322 (436)
|.+-+-
T Consensus 382 ~~~ag~ 387 (502)
T PRK07107 382 RYFARF 387 (502)
T ss_pred hhhhcc
Confidence 987553
No 143
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.38 E-value=1.9e-05 Score=77.45 Aligned_cols=147 Identities=14% Similarity=0.238 Sum_probs=93.8
Q ss_pred CCCCEEEEecCCCHH-------HH-HHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc---cc
Q 013813 156 EDRPLFVQFCANDPE-------IL-LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NL 224 (436)
Q Consensus 156 ~e~plivQL~g~d~e-------~~-~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~---~~ 224 (436)
.+.++++.+.+..+. .+ ..+.+.++.|+|+|++-.- .|+ ..+.+.+ +.++++++ ..
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~ 135 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDW 135 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence 356678877433221 22 3344567789999888631 121 1122333 34444443 34
Q ss_pred CccEEEEec-----cCC-ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC--
Q 013813 225 NVPVSCKIR-----VFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-- 296 (436)
Q Consensus 225 ~iPVsVKiR-----lg~-~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~-- 296 (436)
++|+.|..- ++. +.+.....++.+.+.|+|+|-+. + ..+.+.++++.+...+||++.|||+
T Consensus 136 g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~---------~--~~~~~~l~~~~~~~~iPVva~GGi~~~ 204 (258)
T TIGR01949 136 GVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP---------Y--TGDIDSFRDVVKGCPAPVVVAGGPKTN 204 (258)
T ss_pred CCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc---------C--CCCHHHHHHHHHhCCCcEEEecCCCCC
Confidence 788887432 222 22333444678889999999763 1 1357889999888899999999999
Q ss_pred CHHHHHHHH----HhcCcceeeeehHHhhCCccch
Q 013813 297 HMEDVQKCL----EETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 297 s~eda~~~l----~~tGaDgVmIGRgal~nP~lf~ 327 (436)
|.+++.+.+ + .|++|+.+||+++..++...
T Consensus 205 ~~~~~~~~i~~~~~-aGa~Gia~g~~i~~~~dp~~ 238 (258)
T TIGR01949 205 SDREFLQMIKDAME-AGAAGVAVGRNIFQHDDPVG 238 (258)
T ss_pred CHHHHHHHHHHHHH-cCCcEEehhhHhhcCCCHHH
Confidence 666665554 5 59999999999998776443
No 144
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=98.37 E-value=7.1e-07 Score=83.82 Aligned_cols=126 Identities=26% Similarity=0.464 Sum_probs=85.9
Q ss_pred CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-------------
Q 013813 192 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV------------- 258 (436)
Q Consensus 192 CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V------------- 258 (436)
-|......| |-+-|.||..+++|- +++.+||..|.|+|.-.+ |+++++.|+|+|.=
T Consensus 51 vPadiR~~G--gV~RMsDP~mIKei~----~aVsiPVMAk~RiGHFVE-----AQIlE~l~vDYiDESEvlt~AD~~hhI 119 (296)
T KOG1606|consen 51 VPADIRAQG--GVARMSDPRMIKEIK----NAVSIPVMAKVRIGHFVE-----AQILEALGVDYIDESEVLTPADWDHHI 119 (296)
T ss_pred CCHhHHhcC--CeeecCCHHHHHHHH----HhccchhhhhhhhhhhhH-----HHHHHHhccCccchhhhcccccccchh
Confidence 465544444 788899998877664 556899999999975322 67788888888731
Q ss_pred --cc--------------------------CcccccCC--------------------------------CCCccCHHHH
Q 013813 259 --HG--------------------------RTRDEKDG--------------------------------KKFRADWNAI 278 (436)
Q Consensus 259 --Hg--------------------------Rt~~~~~~--------------------------------~~g~ad~~~i 278 (436)
|. ||..+... ....+-++++
T Consensus 120 ~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv 199 (296)
T KOG1606|consen 120 EKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLV 199 (296)
T ss_pred hhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHH
Confidence 00 11111000 0001234555
Q ss_pred HHHHhhCCCcE--EEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 279 KAVKNALRIPV--LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 279 ~~ik~~~~iPV--ianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
++.++.-.+|| ++.|||.|+.|+.-+++. |||||.+|.|.+..++=++..
T Consensus 200 ~~t~q~GrlPVV~FAaGGvaTPADAALmMQL-GCdGVFVGSgiFks~dP~k~a 251 (296)
T KOG1606|consen 200 KQTKQLGRLPVVNFAAGGVATPADAALMMQL-GCDGVFVGSGIFKSGDPVKRA 251 (296)
T ss_pred HHHHHcCCCceEEecccCcCChhHHHHHHHc-CCCeEEeccccccCCCHHHHH
Confidence 66666657888 599999999999998886 999999999988777766544
No 145
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.37 E-value=1.6e-05 Score=75.65 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++...++..++..|++.|.+..-.. ...+.+.++++++++.+++|++..|||+|.++++++++. |||+|.+|
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sG-----a~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~-GAD~VVVG 205 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSG-----ASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLA-GADAIVTG 205 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCC-----CCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHc-CCCEEEeC
Confidence 3445555666666666665532211 111456899999999999999999999999999999886 89999987
No 146
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=4e-06 Score=78.72 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=61.6
Q ss_pred HHHHHHcCccEE--EeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 245 AKMLEDAGCSLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 245 ak~le~aG~d~I--~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+..+.++|+|.| |++|.|.... .....|+.+++++.+ .+++||+-|.+.|+++++++++. ||++|.+| +++..
T Consensus 140 ~l~a~~~G~D~IGTTLsGYT~~~~--~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~-Ga~aVvVG-sAITR 214 (229)
T COG3010 140 GLNAHKLGFDIIGTTLSGYTGYTE--KPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEI-GADAVVVG-SAITR 214 (229)
T ss_pred HHHHHHcCCcEEecccccccCCCC--CCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHh-CCeEEEEC-cccCC
Confidence 444678899988 7778776432 222579999999988 79999999999999999999996 99999999 55566
Q ss_pred Cccc
Q 013813 323 PALF 326 (436)
Q Consensus 323 P~lf 326 (436)
|.-.
T Consensus 215 p~~I 218 (229)
T COG3010 215 PEEI 218 (229)
T ss_pred HHHH
Confidence 6533
No 147
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.36 E-value=4.1e-05 Score=75.40 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=102.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
-+.|++..=|-.++- ++....+.|+|+|=|... . + +++.+.++++..++ .++-+.|-+.
T Consensus 110 v~iPvl~kdfi~~~~---qi~~a~~~GAD~VlLi~~-------------~-l-~~~~l~~li~~a~~-lGl~~lvevh-- 168 (260)
T PRK00278 110 VSLPVLRKDFIIDPY---QIYEARAAGADAILLIVA-------------A-L-DDEQLKELLDYAHS-LGLDVLVEVH-- 168 (260)
T ss_pred cCCCEEeeeecCCHH---HHHHHHHcCCCEEEEEec-------------c-C-CHHHHHHHHHHHHH-cCCeEEEEeC--
Confidence 357888765655655 333445679999988732 2 2 35678888888765 4777666643
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+.++ ++.+.++|++.|.+|+|.... . ..|++.+.++.+.. .+++|+.|||.+++++.++++. |+|+|
T Consensus 169 -~~~E----~~~A~~~gadiIgin~rdl~~---~--~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~-Gad~v 237 (260)
T PRK00278 169 -DEEE----LERALKLGAPLIGINNRNLKT---F--EVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKA-GADAV 237 (260)
T ss_pred -CHHH----HHHHHHcCCCEEEECCCCccc---c--cCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHc-CCCEE
Confidence 2222 244668899999999887542 2 45678888888765 3699999999999999999986 99999
Q ss_pred eeehHHhhCCccch
Q 013813 314 LSAESLLENPALFA 327 (436)
Q Consensus 314 mIGRgal~nP~lf~ 327 (436)
.||++++..+..-.
T Consensus 238 lVGsaI~~~~dp~~ 251 (260)
T PRK00278 238 LVGESLMRADDPGA 251 (260)
T ss_pred EECHHHcCCCCHHH
Confidence 99999998877544
No 148
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.35 E-value=4.6e-06 Score=88.65 Aligned_cols=141 Identities=18% Similarity=0.127 Sum_probs=97.8
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~ 236 (436)
+..+-.+.+-..+....+..+++.|+|.|-|-... .+++.+.++++++++.. ++||.+. -..
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~---------------g~~~~~~~~i~~i~~~~~~~~vi~g--~~~ 275 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAH---------------GHQVKMISAIKAVRALDLGVPIVAG--NVV 275 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCC---------------CCcHHHHHHHHHHHHHCCCCeEEEe--ccC
Confidence 44566666666677777778888899988776432 24578999999999875 7899884 112
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCccc--cc--CCCCCc----cCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRD--EK--DGKKFR----ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~--~~--~~~~g~----ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~t 308 (436)
+ .+-++.|.++|+|.|.|-++... .. ...-|. +.++..+.+++ .++|||+.|||+++.|+.++|..
T Consensus 276 t----~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~-~~~~viadGgi~~~~di~kala~- 349 (475)
T TIGR01303 276 S----AEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK-LGGHVWADGGVRHPRDVALALAA- 349 (475)
T ss_pred C----HHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHHc-
Confidence 2 34467788999999987433211 00 111112 23443333343 38999999999999999999996
Q ss_pred CcceeeeehHHhh
Q 013813 309 GCEGVLSAESLLE 321 (436)
Q Consensus 309 GaDgVmIGRgal~ 321 (436)
|||+||+|+-+-+
T Consensus 350 GA~~vm~g~~~ag 362 (475)
T TIGR01303 350 GASNVMVGSWFAG 362 (475)
T ss_pred CCCEEeechhhcc
Confidence 9999999977643
No 149
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.34 E-value=1.4e-06 Score=84.24 Aligned_cols=86 Identities=16% Similarity=0.284 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.++++.+.+. ++.|++-.+.... .+. +.+++.++++.+.+++||++.|||+|.+|++++++. |+++|.+|+++
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~-~g~--~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~-G~~~vivGtaa 105 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAF-EGK--PKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEI-GVENVIIGTKA 105 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchh-cCC--cchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHC-CCCEEEECchh
Confidence 788899999998 9999886554321 111 468999999999999999999999999999999986 99999999999
Q ss_pred hhCCccchhhhh
Q 013813 320 LENPALFAGFRT 331 (436)
Q Consensus 320 l~nP~lf~~i~~ 331 (436)
+ ||.+++++..
T Consensus 106 ~-~~~~l~~~~~ 116 (228)
T PRK04128 106 F-DLEFLEKVTS 116 (228)
T ss_pred c-CHHHHHHHHH
Confidence 9 9999987753
No 150
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.34 E-value=1e-05 Score=79.85 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=92.0
Q ss_pred CCCEEEEecCC--------CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc---ccC
Q 013813 157 DRPLFVQFCAN--------DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NLN 225 (436)
Q Consensus 157 e~plivQL~g~--------d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~---~~~ 225 (436)
+.++++.+.+. ....+.++.+.++.|+|+|++-+- +|+.. .+.+.+.++++++ ..+
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~----------~g~~~---~~~~~~~~~~v~~~~~~~g 139 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVN----------VGSET---EAEMLEDLGEVAEECEEWG 139 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEe----------cCChh---HHHHHHHHHHHHHHHHHcC
Confidence 45566665521 122233344567789999888631 11110 1223333333333 347
Q ss_pred ccEEEEec-------cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC--
Q 013813 226 VPVSCKIR-------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-- 296 (436)
Q Consensus 226 iPVsVKiR-------lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~-- 296 (436)
+|+.|=.. .+.+.+.....++.+.+.|+|+|-.. +. .+.+.++++.+..++||++.|||+
T Consensus 140 ~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---------~~--~~~~~l~~~~~~~~ipV~a~GGi~~~ 208 (267)
T PRK07226 140 MPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN---------YT--GDPESFREVVEGCPVPVVIAGGPKTD 208 (267)
T ss_pred CcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC---------CC--CCHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 88777321 11223344555788889999999443 21 256788888887789999999999
Q ss_pred CHHHHHHHH----HhcCcceeeeehHHhhCCccc
Q 013813 297 HMEDVQKCL----EETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 297 s~eda~~~l----~~tGaDgVmIGRgal~nP~lf 326 (436)
+.+++.+++ + .||+|+.+||.++..++.-
T Consensus 209 ~~~~~l~~v~~~~~-aGA~Gis~gr~i~~~~~p~ 241 (267)
T PRK07226 209 TDREFLEMVRDAME-AGAAGVAVGRNVFQHEDPE 241 (267)
T ss_pred CHHHHHHHHHHHHH-cCCcEEehhhhhhcCCCHH
Confidence 889888886 5 4999999999999877643
No 151
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.34 E-value=1.6e-06 Score=84.12 Aligned_cols=89 Identities=6% Similarity=0.129 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHH-cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 239 QDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~-aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
.++.+.|+.+.+ .|++.|+|-.-..... + ...+++.|+++.+.+++||.+.|||+|.+|+++++.. ||+-|.+|+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~-~--~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~-Ga~kvvigt 106 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKA-Q--HAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAA-GINYCIVGT 106 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECccccc-C--CcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHC-CCCEEEECc
Confidence 367789999998 7999999876544321 1 1568899999999999999999999999999999986 999999999
Q ss_pred HHhhCCccchhhhh
Q 013813 318 SLLENPALFAGFRT 331 (436)
Q Consensus 318 gal~nP~lf~~i~~ 331 (436)
.++.||.+++++..
T Consensus 107 ~a~~~~~~l~~~~~ 120 (234)
T PRK13587 107 KGIQDTDWLKEMAH 120 (234)
T ss_pred hHhcCHHHHHHHHH
Confidence 99999999998764
No 152
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.34 E-value=1.1e-05 Score=86.28 Aligned_cols=139 Identities=20% Similarity=0.193 Sum_probs=95.7
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~ 238 (436)
++-...+-+++.+..+..+++.|+|.|=++. ++ | +...+.+.++.+++.. ++||.++ -..+.
T Consensus 218 ~V~aai~~~~~~~e~a~~L~~agvdvivvD~--a~--------g-----~~~~vl~~i~~i~~~~p~~~vi~g--~v~t~ 280 (486)
T PRK05567 218 RVGAAVGVGADNEERAEALVEAGVDVLVVDT--AH--------G-----HSEGVLDRVREIKAKYPDVQIIAG--NVATA 280 (486)
T ss_pred EEEeecccCcchHHHHHHHHHhCCCEEEEEC--CC--------C-----cchhHHHHHHHHHhhCCCCCEEEe--ccCCH
Confidence 4445556566666666677788999875542 11 1 1244677788888877 8999997 22232
Q ss_pred hhHHHHHHHHHHcCccEEEeccCccc----cc-CCCCCccCHHHHHHHHhh---CCCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRD----EK-DGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~----~~-~~~~g~ad~~~i~~ik~~---~~iPVianGGI~s~eda~~~l~~tGa 310 (436)
+-++.+.++|+|+|.|-. +.. .+ ...-|.+++..+.++++. .++|||+.|||.++.|+.++|.. ||
T Consensus 281 ----e~a~~l~~aGad~i~vg~-g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~-GA 354 (486)
T PRK05567 281 ----EAARALIEAGADAVKVGI-GPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAA-GA 354 (486)
T ss_pred ----HHHHHHHHcCCCEEEECC-CCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHh-CC
Confidence 346667789999997632 111 00 112234677888777764 47999999999999999999996 99
Q ss_pred ceeeeehHHhh
Q 013813 311 EGVLSAESLLE 321 (436)
Q Consensus 311 DgVmIGRgal~ 321 (436)
|+||+|+.+-.
T Consensus 355 ~~v~~G~~~a~ 365 (486)
T PRK05567 355 SAVMLGSMLAG 365 (486)
T ss_pred CEEEECccccc
Confidence 99999977644
No 153
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.34 E-value=5e-06 Score=80.32 Aligned_cols=130 Identities=19% Similarity=0.175 Sum_probs=92.6
Q ss_pred EEecC--CCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC----
Q 013813 162 VQFCA--NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---- 235 (436)
Q Consensus 162 vQL~g--~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg---- 235 (436)
+|+.| ++.+++.+ +++.|++.+-++ ++.. +|+++.++.+...+ +-+++-.|-|
T Consensus 76 v~~gGGIrs~edv~~---l~~~G~~~vivG--------------taa~-~~~~l~~~~~~~g~---ivvslD~~~g~v~~ 134 (228)
T PRK04128 76 VQVGGGLRTYESIKD---AYEIGVENVIIG--------------TKAF-DLEFLEKVTSEFEG---ITVSLDVKGGRIAV 134 (228)
T ss_pred EEEcCCCCCHHHHHH---HHHCCCCEEEEC--------------chhc-CHHHHHHHHHHcCC---EEEEEEccCCeEec
Confidence 55544 45555554 445688887654 4455 79999999887732 4555555443
Q ss_pred --C---ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 236 --P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 236 --~---~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tG 309 (436)
| ...+..++++.+++. +..|.++...++++..+ +| .+.+. .++|||++|||.+.+|+.++.+ .|
T Consensus 135 ~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G---~d-----~l~~~~~~~pviasGGv~~~~Dl~~l~~-~g 204 (228)
T PRK04128 135 KGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTG---IE-----EIERFWGDEEFIYAGGVSSAEDVKKLAE-IG 204 (228)
T ss_pred CCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccC---HH-----HHHHhcCCCCEEEECCCCCHHHHHHHHH-CC
Confidence 2 123457888888888 99999998888765432 33 22222 5899999999999999999887 49
Q ss_pred cceeeeehHHhhC
Q 013813 310 CEGVLSAESLLEN 322 (436)
Q Consensus 310 aDgVmIGRgal~n 322 (436)
++||.+|++++..
T Consensus 205 ~~gvivg~al~~g 217 (228)
T PRK04128 205 FSGVIIGKALYEG 217 (228)
T ss_pred CCEEEEEhhhhcC
Confidence 9999999998765
No 154
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.29 E-value=4.3e-06 Score=85.88 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=70.7
Q ss_pred cCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC------CCCCccCHHHHH
Q 013813 207 MDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIK 279 (436)
Q Consensus 207 l~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~------~~~g~ad~~~i~ 279 (436)
..+++-+.+.|+.+|+.. ++||+||+-.+...++. +..+.++|+|+|+|.|.....-. ..-|-+-...+.
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~---~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~ 260 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDI---AAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALA 260 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHH---HHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHH---HHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHH
Confidence 346788999999999988 89999998776654433 33377899999999876542100 000111112233
Q ss_pred HHHhhC-------CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 280 AVKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 280 ~ik~~~-------~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++.+.+ .+.+++.||+.|..|+.+++.. |||+|.+||++|--
T Consensus 261 ~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaL-GAD~v~igt~~liA 309 (368)
T PF01645_consen 261 RAHQALVKNGLRDRVSLIASGGLRTGDDVAKALAL-GADAVYIGTAALIA 309 (368)
T ss_dssp HHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHC-T-SEEE-SHHHHHH
T ss_pred HHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhc-CCCeeEecchhhhh
Confidence 333321 4899999999999999999986 99999999998754
No 155
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.28 E-value=9.9e-06 Score=83.46 Aligned_cols=138 Identities=19% Similarity=0.141 Sum_probs=82.6
Q ss_pred HHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHH
Q 013813 169 PEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 247 (436)
Q Consensus 169 ~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~ 247 (436)
+....+.++. +++|+|.|-++.- .+...|.+. -.+|..+.++++. .++||.++- -.+.+ .++.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgr-----t~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G~--V~t~e----~A~~ 204 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGT-----LVSAEHVST-SGEPLNLKEFIGE----LDVPVIAGG--VNDYT----TALH 204 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEecc-----chhhhccCC-CCCHHHHHHHHHH----CCCCEEEeC--CCCHH----HHHH
Confidence 3344455544 4669999999831 122222111 1256666555554 478998731 12222 3455
Q ss_pred HHHcCccEEEeccCccccc---CCCCCccCHHHHHHHHh-------hC---CCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 248 LEDAGCSLLAVHGRTRDEK---DGKKFRADWNAIKAVKN-------AL---RIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 248 le~aG~d~I~VHgRt~~~~---~~~~g~ad~~~i~~ik~-------~~---~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+.++|+|.|.+ |+..... ....+......+..+++ .. .+|||+.|||.+..|+.++|.. |||+||
T Consensus 205 ~~~aGaDgV~~-G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAl-GAdaV~ 282 (369)
T TIGR01304 205 LMRTGAAGVIV-GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIAC-GADAVV 282 (369)
T ss_pred HHHcCCCEEEE-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHc-CCCEee
Confidence 55699999873 3222111 01111233344444432 12 3999999999999999999986 999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+|+.++.--+
T Consensus 283 iGt~~a~a~E 292 (369)
T TIGR01304 283 LGSPLARAAE 292 (369)
T ss_pred eHHHHHhhhc
Confidence 9999977554
No 156
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.28 E-value=3.3e-06 Score=81.00 Aligned_cols=89 Identities=26% Similarity=0.401 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.++|........ ....+++.++++.+.+++||...|||.+.+|++++++. |||.|++|..
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~---g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~-Ga~~vvlgs~ 103 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKE---GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDL-GVDRVIIGTA 103 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc---CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHc-CCCEEEEChH
Confidence 4788999999999999999965543311 12468899999999999999999999999999999985 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 104 ~l~d~~~~~~~~~ 116 (230)
T TIGR00007 104 AVENPDLVKELLK 116 (230)
T ss_pred HhhCHHHHHHHHH
Confidence 9999998887654
No 157
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.27 E-value=1e-05 Score=86.22 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=101.7
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~ 236 (436)
+..+-.+.|-..+....+..+++.|+|.|-|... + + .-..+.++++.+++.. +++|.+.
T Consensus 215 ~l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a--~-----~--------~~~~~~~~i~~ik~~~p~~~v~ag----- 274 (479)
T PRK07807 215 RLRVAAAVGINGDVAAKARALLEAGVDVLVVDTA--H-----G--------HQEKMLEALRAVRALDPGVPIVAG----- 274 (479)
T ss_pred ccchHhhhccChhHHHHHHHHHHhCCCEEEEecc--C-----C--------ccHHHHHHHHHHHHHCCCCeEEee-----
Confidence 3344445555556666666777889998766531 1 1 1366888999999876 6788774
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCc---ccc-cCCCCCccCHHHHHHHHh---hCCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRT---RDE-KDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt---~~~-~~~~~g~ad~~~i~~ik~---~~~iPVianGGI~s~eda~~~l~~tG 309 (436)
+. .+.+-++.+.++|+|.|-|--.+ +.. .+..-+.+++..+.++++ ..++|||+-|||.++.|+.++|.. |
T Consensus 275 nv-~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~-g 352 (479)
T PRK07807 275 NV-VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAA-G 352 (479)
T ss_pred cc-CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHc-C
Confidence 22 23445777888999999762111 111 122233578888888887 458999999999999999999996 9
Q ss_pred cceeeeehHHhhCCc
Q 013813 310 CEGVLSAESLLENPA 324 (436)
Q Consensus 310 aDgVmIGRgal~nP~ 324 (436)
||+||+|+.+..-.+
T Consensus 353 a~~v~~g~~~ag~~E 367 (479)
T PRK07807 353 ASNVMIGSWFAGTYE 367 (479)
T ss_pred CCeeeccHhhccCcc
Confidence 999999998876554
No 158
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.26 E-value=1.6e-05 Score=75.91 Aligned_cols=129 Identities=22% Similarity=0.227 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC-CChhhHHHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKM 247 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg-~~~~d~~~~ak~ 247 (436)
....++...++.|+|.||+-+ ++|.....+.+.+.+-++++++.+ ++|+.|=+-.+ .+.++....++.
T Consensus 71 ~K~~E~~~Av~~GAdEiDvv~----------n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~i 140 (211)
T TIGR00126 71 VKLYETKEAIKYGADEVDMVI----------NIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEI 140 (211)
T ss_pred HHHHHHHHHHHcCCCEEEeec----------chHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHH
Confidence 345555567788999999975 256656667888888888888776 56655533333 344566778889
Q ss_pred HHHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 248 LEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 248 le~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+.++|+|+|-.. |-. ++.+..+.++.+++.+ +++|-+.|||+|.+++.++++. |++-+...
T Consensus 141 a~eaGADfvKTsTGf~-------~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~a-Ga~riGts 204 (211)
T TIGR00126 141 CIDAGADFVKTSTGFG-------AGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEA-GASRIGAS 204 (211)
T ss_pred HHHhCCCEEEeCCCCC-------CCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-hhHHhCcc
Confidence 999999999443 221 1245566666666655 6999999999999999999987 88866443
No 159
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.26 E-value=1.6e-05 Score=81.93 Aligned_cols=136 Identities=20% Similarity=0.119 Sum_probs=82.7
Q ss_pred HHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH
Q 013813 172 LLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED 250 (436)
Q Consensus 172 ~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~ 250 (436)
..+-+ .+++.|+|.|-++..-. ...|+..- .++..+.++++. .++||.++- -.+ .+.++.+.+
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~-----~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG~--V~t----~e~A~~l~~ 206 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVV-----SAEHVSKE-GEPLNLKEFIYE----LDVPVIVGG--CVT----YTTALHLMR 206 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccch-----hhhccCCc-CCHHHHHHHHHH----CCCCEEEeC--CCC----HHHHHHHHH
Confidence 33444 34577999999985311 11122111 145555555444 478998741 112 234566667
Q ss_pred cCccEEEeccCccc----cc-CCCCCccCHHHHHHHHhh-------C---CCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 251 AGCSLLAVHGRTRD----EK-DGKKFRADWNAIKAVKNA-------L---RIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 251 aG~d~I~VHgRt~~----~~-~~~~g~ad~~~i~~ik~~-------~---~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+|||.|.+ |+... .. ....+.+.+..+.++++. . ++|||+.|||.+..|+.++|.. |||+||+
T Consensus 207 aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlal-GAd~Vm~ 284 (368)
T PRK08649 207 TGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIAC-GADAVML 284 (368)
T ss_pred cCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHc-CCCeecc
Confidence 99999977 44321 00 011112334444444321 1 5999999999999999999986 9999999
Q ss_pred ehHHhhCCcc
Q 013813 316 AESLLENPAL 325 (436)
Q Consensus 316 GRgal~nP~l 325 (436)
|+.+..-.+-
T Consensus 285 Gs~fa~t~Es 294 (368)
T PRK08649 285 GSPLARAAEA 294 (368)
T ss_pred cchhcccccC
Confidence 9999775553
No 160
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.25 E-value=5.4e-05 Score=72.94 Aligned_cols=128 Identities=16% Similarity=0.233 Sum_probs=83.0
Q ss_pred HHHHHcCCCcEE--EEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-C------CChhhHHHHH
Q 013813 175 AARRVEPYCDYV--DINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-F------PNLQDTIKYA 245 (436)
Q Consensus 175 AA~~v~~g~D~I--dLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-g------~~~~d~~~~a 245 (436)
+.+.++.|+|+| .+|.|--. -....+.+.++.+..+ ..++|+.+-... | .+.++....+
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~~~-----------~~~~~~~i~~v~~~~~-~~g~~~iie~~~~g~~~~~~~~~~~i~~~~ 149 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGSEE-----------EREMLEELARVAAEAH-KYGLPLIAWMYPRGPAVKNEKDPDLIAYAA 149 (235)
T ss_pred HHHHHHCCCCEEEEEEecCCch-----------HHHHHHHHHHHHHHHH-HcCCCEEEEEeccCCcccCccCHHHHHHHH
Confidence 345567799998 45543100 0011123333433332 358888886543 1 1123333347
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCC--CCHHH----HHHHHHhcCcceeeeehHH
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV--RHMED----VQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI--~s~ed----a~~~l~~tGaDgVmIGRga 319 (436)
+.+.+.|+|+|-+.. ..+++.++++++...+||++.||+ .|.++ +.++++ .|++||.+||.+
T Consensus 150 ~~a~~~GaD~Ik~~~-----------~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~i 217 (235)
T cd00958 150 RIGAELGADIVKTKY-----------TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAME-AGAAGVAVGRNI 217 (235)
T ss_pred HHHHHHCCCEEEecC-----------CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHH-cCCcEEEechhh
Confidence 778899999997731 125788999999889999999987 66766 666676 499999999999
Q ss_pred hhCCccc
Q 013813 320 LENPALF 326 (436)
Q Consensus 320 l~nP~lf 326 (436)
+..++..
T Consensus 218 ~~~~dp~ 224 (235)
T cd00958 218 FQRPDPV 224 (235)
T ss_pred hcCCCHH
Confidence 9887643
No 161
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.23 E-value=2.3e-05 Score=73.51 Aligned_cols=152 Identities=18% Similarity=0.324 Sum_probs=91.2
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~ 238 (436)
+.+.|..-|...+.++++.+. .|++.|.+.+. + |.... +..+-.++++.+++.++.++.|.+-.
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~--------d--~~~~~-~~~~~~~~~~~i~~~~~~~~~v~l~~---- 66 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVM--------D--GHFVP-NLTFGPPVVKALRKHTDLPLDVHLMV---- 66 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecc--------c--CCCCC-ccccCHHHHHHHHhhCCCcEEEEeee----
Confidence 567888999999999997665 58999998521 0 11000 11111234455554434444333222
Q ss_pred hhHHHHHHHHHHcCccEEEeccCccc--------------------------c----------------c-CCCCC-ccC
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------E----------------K-DGKKF-RAD 274 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~--------------------------~----------------~-~~~~g-~ad 274 (436)
.+..++++.+.++|+|+++||+...+ + . .+.++ ..+
T Consensus 67 ~d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~ 146 (211)
T cd00429 67 ENPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFI 146 (211)
T ss_pred CCHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccC
Confidence 12234566666777777777653210 0 0 01111 123
Q ss_pred H---HHHHHHHhhC-----CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 275 W---NAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 275 ~---~~i~~ik~~~-----~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
| +.++++++.. ++||++.|||+. +++.++++. |+|+|.+|++++..+.....
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~-gad~iivgsai~~~~~~~~~ 206 (211)
T cd00429 147 PEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEA-GADVLVAGSALFGSDDYAEA 206 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHc-CCCEEEECHHHhCCCCHHHH
Confidence 3 3444555544 489999999995 999998875 99999999999987775443
No 162
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.20 E-value=0.00012 Score=68.87 Aligned_cols=142 Identities=16% Similarity=0.286 Sum_probs=94.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
+..+++-+--.|+..+ ++-+.++.|+|.|-+|+-+|. ..+.++++.+++ .++++.+-+-
T Consensus 52 ~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~~~~~----------------~~~~~~i~~~~~-~g~~~~~~~~--- 110 (206)
T TIGR03128 52 DRKVLADLKTMDAGEY-EAEQAFAAGADIVTVLGVADD----------------ATIKGAVKAAKK-HGKEVQVDLI--- 110 (206)
T ss_pred CCEEEEEEeeccchHH-HHHHHHHcCCCEEEEeccCCH----------------HHHHHHHHHHHH-cCCEEEEEec---
Confidence 4556666544466643 233446779999999965431 345667777665 4788887631
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+..+..+.++.+.+.|+|++.++..+..+... +..++.++++++... .+|...||| +.+.+.++++. |+|+|.+
T Consensus 111 ~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~---~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~-Ga~~v~v 185 (206)
T TIGR03128 111 NVKDKVKRAKELKELGADYIGVHTGLDEQAKG---QNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKL-GPDIVIV 185 (206)
T ss_pred CCCChHHHHHHHHHcCCCEEEEcCCcCcccCC---CCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHc-CCCEEEE
Confidence 11233444566677899999997544433221 345677888887664 455569999 78999999975 9999999
Q ss_pred ehHHhhCCc
Q 013813 316 AESLLENPA 324 (436)
Q Consensus 316 GRgal~nP~ 324 (436)
||+++..+.
T Consensus 186 Gsai~~~~d 194 (206)
T TIGR03128 186 GGAITKAAD 194 (206)
T ss_pred eehhcCCCC
Confidence 999887655
No 163
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.19 E-value=2e-06 Score=83.03 Aligned_cols=89 Identities=24% Similarity=0.490 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.++|..-.+.. .+. +.+++.++++.+.+.+||.+.|||+|.+|++++++. ||+.|.+|+.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~-~g~--~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~-Ga~~Vvigt~ 104 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAK-EGR--GSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDA-GADRVVIGTE 104 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHC-CTH--HHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHT-T-SEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcc-cCc--hhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHh-CCCEEEeChH
Confidence 578889999999999999986543321 111 468899999999999999999999999999999996 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 105 ~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 105 ALEDPELLEELAE 117 (229)
T ss_dssp HHHCCHHHHHHHH
T ss_pred HhhchhHHHHHHH
Confidence 9999999988764
No 164
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.19 E-value=4.9e-06 Score=81.09 Aligned_cols=87 Identities=14% Similarity=0.286 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.++|-.-...- .+. +.+++.++++.+.+ +||...|||+|.++++++++. ||+-|+||+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~-~g~--~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~-Ga~rvvigT~ 104 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAI-ENS--VENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKL-GYRRQIVSSK 104 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcc-cCC--cchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHC-CCCEEEECch
Confidence 588999999999999999886554321 111 46889999999987 799999999999999999986 9999999999
Q ss_pred HhhCCccchhhh
Q 013813 319 LLENPALFAGFR 330 (436)
Q Consensus 319 al~nP~lf~~i~ 330 (436)
++.||.++.++.
T Consensus 105 a~~~p~~l~~~~ 116 (241)
T PRK14114 105 VLEDPSFLKFLK 116 (241)
T ss_pred hhCCHHHHHHHH
Confidence 999999998883
No 165
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.18 E-value=4.3e-05 Score=74.89 Aligned_cols=154 Identities=20% Similarity=0.284 Sum_probs=99.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-- 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-- 234 (436)
..|+.||+.-||+......| ...|+|+|.+|.-|=... .+ .+.+..+...+.+.-+.+... +.|...+..
T Consensus 80 ~~p~GVnvL~nd~~aalaiA--~A~ga~FIRv~~~~g~~~--~d--~G~~~~~a~e~~r~R~~l~a~--v~ilaDV~~kh 151 (254)
T PF03437_consen 80 SVPVGVNVLRNDPKAALAIA--AATGADFIRVNVFVGAYV--TD--EGIIEGCAGELLRYRKRLGAD--VKILADVHVKH 151 (254)
T ss_pred CCCEEeeeecCCCHHHHHHH--HHhCCCEEEecCEEceec--cc--CccccccHHHHHHHHHHcCCC--eEEEeeechhh
Confidence 57999999998887544444 234789999996554322 11 122223333333333333222 444433332
Q ss_pred C--CChhhHHHHHHH-HHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 235 F--PNLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 235 g--~~~~d~~~~ak~-le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+ ....+..+.++. ++..++|+|+|+|..... +++.+.++++++.+++||+.++|++ .+.+.++|+. ||
T Consensus 152 ~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~------~~~~~~l~~vr~~~~~PVlvGSGvt-~~Ni~~~l~~--AD 222 (254)
T PF03437_consen 152 SSPLATRDLEEAAKDAVERGGADAVIVTGKATGE------PPDPEKLKRVREAVPVPVLVGSGVT-PENIAEYLSY--AD 222 (254)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCEEEECCcccCC------CCCHHHHHHHHhcCCCCEEEecCCC-HHHHHHHHHh--CC
Confidence 1 111233344444 478899999999875432 5788999999999999999999996 7889999975 99
Q ss_pred eeeeehHHhhCCccch
Q 013813 312 GVLSAESLLENPALFA 327 (436)
Q Consensus 312 gVmIGRgal~nP~lf~ 327 (436)
|+.||+.+-.|=.+..
T Consensus 223 G~IVGS~~K~~G~~~n 238 (254)
T PF03437_consen 223 GAIVGSYFKKDGKWEN 238 (254)
T ss_pred EEEEeeeeeeCCEeCC
Confidence 9999987655544443
No 166
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.16 E-value=3.1e-05 Score=74.02 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=94.9
Q ss_pred CCCHHH--HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C-CChhh
Q 013813 166 ANDPEI--LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQD 240 (436)
Q Consensus 166 g~d~e~--~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g-~~~~d 240 (436)
|.++-. ..++-..++.|+|.||+=. ++|...-.+++.+.+-++++++.++-++.+|+=+ + .+.++
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVi----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee 141 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVI----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE 141 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeee----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence 444444 4455567788999999853 2466666789999999999999986545666533 2 34556
Q ss_pred HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
....++.+.++|+|+|-- ..+. ..+.+-.+.++.+++.+ .+.|=++|||+|.+|+..+++. |+.-+.
T Consensus 142 ~~~A~~i~~~aGAdFVKT----STGf--~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~a-ga~RiG 210 (228)
T COG0274 142 KRKACEIAIEAGADFVKT----STGF--SAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEA-GATRIG 210 (228)
T ss_pred HHHHHHHHHHhCCCEEEc----CCCC--CCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHH-hHHHhc
Confidence 677888899999999932 2211 12356677788888876 4889999999999999999997 655443
No 167
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.12 E-value=5.5e-05 Score=72.89 Aligned_cols=143 Identities=11% Similarity=0.242 Sum_probs=94.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecC-CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~G-CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
.+.++.+-|+-++|+++.+.+ .+.|+|+|-+|+| +. .+...+.++.+++. ++-+.+=+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~--~~~gad~v~vH~~q~~----------------~d~~~~~~~~i~~~-g~~iGls~-- 122 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF--AKAGASIFTFHIEQAS----------------TIHLHRLIQQIKSA-GMKAGVVL-- 122 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH--HHcCCCEEEEeecccc----------------chhHHHHHHHHHHC-CCeEEEEE--
Confidence 456788999999999988776 5678999999976 11 12334555555433 33222222
Q ss_pred CCChhhHHHHHHHHHHcC-ccEE---EeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 235 FPNLQDTIKYAKMLEDAG-CSLL---AVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG-~d~I---~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tG 309 (436)
.+ ....+.++.+.+.| +|+| .++..+..+. ..+..++.++++++. .++||.+.||| +.+.+.++++. |
T Consensus 123 ~~--~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~---~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~a-G 195 (229)
T PLN02334 123 NP--GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS---FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEA-G 195 (229)
T ss_pred CC--CCCHHHHHHHHhccCCCEEEEEEEecCCCccc---cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHc-C
Confidence 11 12233444454553 9999 4554333321 113345677778776 46899999999 58999998885 9
Q ss_pred cceeeeehHHhhCCccc
Q 013813 310 CEGVLSAESLLENPALF 326 (436)
Q Consensus 310 aDgVmIGRgal~nP~lf 326 (436)
+|+|.+|++++..+..-
T Consensus 196 ad~vvvgsai~~~~d~~ 212 (229)
T PLN02334 196 ANVIVAGSAVFGAPDYA 212 (229)
T ss_pred CCEEEEChHHhCCCCHH
Confidence 99999999988766643
No 168
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.11 E-value=2.2e-05 Score=77.21 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=98.8
Q ss_pred CCEEEEecCC--CHHHHHHHHHHHc-CCCcEEEEec--CCCc--hhhhcCccccccc--CChHHHHHHHHHHh-cccCcc
Q 013813 158 RPLFVQFCAN--DPEILLNAARRVE-PYCDYVDINL--GCPQ--RIARRGNYGAFLM--DNLPLVKSLVEKLA-LNLNVP 227 (436)
Q Consensus 158 ~plivQL~g~--d~e~~~~AA~~v~-~g~D~IdLN~--GCP~--~~~~~~~~Gs~Ll--~~p~~v~eIv~av~-~~~~iP 227 (436)
..++.=|... +.+.+.++++.+. .|+|.|||-+ .-|. +.+.....--+|- -+.+.+.++++.++ +..++|
T Consensus 10 ~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~p 89 (259)
T PF00290_consen 10 KALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIP 89 (259)
T ss_dssp TEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence 3455555554 5588889997665 5999999985 4454 1111110001111 24677888999999 777899
Q ss_pred EEEEeccCCCh---hhHHHHHHHHHHcCccEEEecc--------------------------Cccc--------------
Q 013813 228 VSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHG--------------------------RTRD-------------- 264 (436)
Q Consensus 228 VsVKiRlg~~~---~d~~~~ak~le~aG~d~I~VHg--------------------------Rt~~-------------- 264 (436)
+.+=.= .+. ....+|++.+.++|+|+++|.. -|..
T Consensus 90 ivlm~Y--~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFi 167 (259)
T PF00290_consen 90 IVLMTY--YNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFI 167 (259)
T ss_dssp EEEEE---HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEE
T ss_pred EEEEee--ccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEE
Confidence 876521 111 1234577777778888877611 0100
Q ss_pred ---ccCCCCCc---c---CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 265 ---EKDGKKFR---A---DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 265 ---~~~~~~g~---a---d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
...+-+|. . --+.++.+|+.+++||...=||+++++++++. . ++|||+||++++.
T Consensus 168 Y~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~-~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 168 YLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-A-GADGVIVGSAFVK 231 (259)
T ss_dssp EEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-T-TSSEEEESHHHHH
T ss_pred EeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-c-cCCEEEECHHHHH
Confidence 00111111 1 13668889999999999999999999999988 4 9999999999864
No 169
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.09 E-value=1.4e-05 Score=76.63 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=70.5
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+.+++..+|...+..|...+-+- .+.. ..+.+.++++++.+ ++|++..|||+|.++++++++. |||+|.
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe-~SG~-------~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~a-GAD~VV 202 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLE-YSGA-------YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEA-GADTIV 202 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeC-CCCC-------cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHc-CCCEEE
Confidence 356778889999999996555554 2111 25678999999998 9999999999999999999986 999999
Q ss_pred eehHHhhCCccchhh
Q 013813 315 SAESLLENPALFAGF 329 (436)
Q Consensus 315 IGRgal~nP~lf~~i 329 (436)
+|..++.||.++.++
T Consensus 203 VGsai~~~p~~~~~~ 217 (219)
T cd02812 203 VGNIVEEDPNAALET 217 (219)
T ss_pred ECchhhCCHHHHHHH
Confidence 999999999988754
No 170
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.08 E-value=1.1e-05 Score=78.99 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=70.5
Q ss_pred hH-HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 240 DT-IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 240 d~-~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
++ .+.|+.+++.|+++|+|..= + ..+++.++++.+.+++||...|||++ ++++++++. ||+.|.||..
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVDL------g---~~n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~a-Ga~rVvIGS~ 106 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIML------G---PNNDDAAKEALHAYPGGLQVGGGIND-TNAQEWLDE-GASHVIVTSW 106 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEC------C---CCcHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHHc-CCCEEEECcH
Confidence 34 88999999999999988644 1 22889999999999999999999997 999999996 9999999999
Q ss_pred HhhC----Cccchhhhh
Q 013813 319 LLEN----PALFAGFRT 331 (436)
Q Consensus 319 al~n----P~lf~~i~~ 331 (436)
++.| |.++.++..
T Consensus 107 av~~~~i~~~~~~~i~~ 123 (253)
T TIGR02129 107 LFTKGKFDLKRLKEIVS 123 (253)
T ss_pred HHhCCCCCHHHHHHHHH
Confidence 9998 668877654
No 171
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.07 E-value=1e-05 Score=87.19 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCH-----------HHHHHHHH
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-----------EDVQKCLE 306 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~-----------eda~~~l~ 306 (436)
..+++++|+...+.|+|.|++-.-+...........+++.|+++.+.+.+||.+.|||+|. ++++++|+
T Consensus 266 ~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~ 345 (538)
T PLN02617 266 LGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR 345 (538)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH
Confidence 4578999999999999999997766531111111356899999999999999999999997 66899998
Q ss_pred hcCcceeeeehHHhhCC
Q 013813 307 ETGCEGVLSAESLLENP 323 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP 323 (436)
. |||-|.||++++.||
T Consensus 346 ~-GadkV~i~s~Av~~~ 361 (538)
T PLN02617 346 S-GADKISIGSDAVYAA 361 (538)
T ss_pred c-CCCEEEEChHHHhCh
Confidence 6 999999999999986
No 172
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.07 E-value=6.6e-05 Score=72.20 Aligned_cols=144 Identities=16% Similarity=0.323 Sum_probs=97.9
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEec
Q 013813 160 LFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIR 233 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiR 233 (436)
+..+|...|...+.+-.+.++. |+|.+-+-. | +|+- .+| -++++++++. +++|+.|=+=
T Consensus 2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~-----tfg----------~~~i~~i~~~~~~~~~dvHLM 66 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL-----TFG----------APICKALRDYGITAPIDVHLM 66 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCcc-----ccC----------HHHHHHHHHhCCCCCEEEEec
Confidence 3467888999999998887765 788755542 3 2331 122 3456677765 5777766632
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccc-------------------------------------------cCCCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKK 270 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-------------------------------------------~~~~~ 270 (436)
. ++...+++.+.++|+|.|++|.-.... ..++.
T Consensus 67 v----~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfg 142 (220)
T PRK08883 67 V----KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFG 142 (220)
T ss_pred c----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCC
Confidence 2 356678888889999999998532100 01122
Q ss_pred C----ccCHHHHHHHHhhC-----CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 271 F----RADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 271 g----~ad~~~i~~ik~~~-----~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
| +..++.++++++.. ++||.+-|||+ .+.+..+.+. |||++.+|+++...++
T Consensus 143 Gq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~a-GAd~vVvGSaIf~~~d 203 (220)
T PRK08883 143 GQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEA-GADMFVAGSAIFGQPD 203 (220)
T ss_pred CceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHc-CCCEEEEeHHHhCCCC
Confidence 2 22355677777654 48999999999 8999998886 9999999999876544
No 173
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=98.07 E-value=5.6e-05 Score=74.13 Aligned_cols=122 Identities=19% Similarity=0.158 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccC-CChh-hHHHHH
Q 013813 170 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVF-PNLQ-DTIKYA 245 (436)
Q Consensus 170 e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg-~~~~-d~~~~a 245 (436)
-...++...++.|+|.||+=+ ++|..+..+.+.+.+-+++|++.++ .++-|=+-.+ .+.+ +....+
T Consensus 84 ~K~~Ea~~Ai~~GAdEiD~Vi----------nig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~ 153 (257)
T PRK05283 84 IALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKAS 153 (257)
T ss_pred HHHHHHHHHHHcCCCEEeeec----------cHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHH
Confidence 345566667788999999854 2566666788999999998888764 3443333333 2334 467788
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-------CCcEEEccCCCCHHHHHHHHHh
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-------RIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-------~iPVianGGI~s~eda~~~l~~ 307 (436)
+.+.++|+|+|-- ..++. ++.+..+.++.+++.+ ++-|-++|||+|.+++.++++.
T Consensus 154 ~~a~~aGADFVKT----STGf~--~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~a 216 (257)
T PRK05283 154 EIAIKAGADFIKT----STGKV--PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLAL 216 (257)
T ss_pred HHHHHhCCCEEEc----CCCCC--CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHH
Confidence 9999999999932 22211 1245666666666553 4789999999999999999986
No 174
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.06 E-value=1.1e-05 Score=79.15 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|+++|+|..=.. + .+.+++.+++|++ +++||-..|||++ ++++++|+. ||+-|+||+.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg----g--~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~~-Ga~rViigT~ 113 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA----D--DASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYLDA-GASHVIVTSY 113 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC----C--CcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHHHc-CCCEEEEchH
Confidence 5789999999999999998864422 1 1456899999999 8899999999996 999999986 9999999999
Q ss_pred HhhC----Cccchhhhh
Q 013813 319 LLEN----PALFAGFRT 331 (436)
Q Consensus 319 al~n----P~lf~~i~~ 331 (436)
++.| |.++.++..
T Consensus 114 Av~~~~~~p~~v~~~~~ 130 (262)
T PLN02446 114 VFRDGQIDLERLKDLVR 130 (262)
T ss_pred HHhCCCCCHHHHHHHHH
Confidence 9999 999887754
No 175
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.05 E-value=8.9e-05 Score=70.22 Aligned_cols=123 Identities=21% Similarity=0.293 Sum_probs=84.3
Q ss_pred HHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC-CChhhHHHHHHHHHH
Q 013813 173 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLED 250 (436)
Q Consensus 173 ~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg-~~~~d~~~~ak~le~ 250 (436)
.++-+.++.|+|+||+.+ .+|..+-.+.+.+.+-+.++++.+ ++|+-|=+-.+ .+.+.....++.+.+
T Consensus 73 ~eve~A~~~GAdevdvv~----------~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e 142 (203)
T cd00959 73 AEAREAIADGADEIDMVI----------NIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIE 142 (203)
T ss_pred HHHHHHHHcCCCEEEEee----------cHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 334456778999999975 245444556677777777777666 45555532233 234566778889999
Q ss_pred cCccEEEec-cCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 251 AGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 251 aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+|+|+|-.. |-.. +.+..+.+..+++.+ ++||.++|||+|.+++.++++. ||+-+
T Consensus 143 ~GaD~IKTsTG~~~-------~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~-g~~ri 200 (203)
T cd00959 143 AGADFIKTSTGFGP-------GGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEA-GATRI 200 (203)
T ss_pred hCCCEEEcCCCCCC-------CCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHh-Chhhc
Confidence 999999553 2221 235556555555554 6999999999999999999986 88754
No 176
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.03 E-value=1.5e-05 Score=77.01 Aligned_cols=89 Identities=26% Similarity=0.399 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+++.+.|+.+.+.|+..+++..=+.... .++-+.++++++.+.+++||-..|||+|.++++++++. |++-|.+|+.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~---g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~-G~~rViiGt~ 106 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKA---GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDA-GVARVIIGTA 106 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecccccc---CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHC-CCCEEEEecc
Confidence 5788999999999999998864443211 12567899999999999999999999999999999995 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.++.++..
T Consensus 107 av~~p~~v~~~~~ 119 (241)
T COG0106 107 AVKNPDLVKELCE 119 (241)
T ss_pred eecCHHHHHHHHH
Confidence 9999999988764
No 177
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.02 E-value=0.00016 Score=71.12 Aligned_cols=161 Identities=22% Similarity=0.256 Sum_probs=101.2
Q ss_pred CCEEEEecC--CCHHHHHHHHHH-HcCCCcEEEEec--CCCc---hhhhcCccccccc--CChHHHHHHHHHHhcc-cCc
Q 013813 158 RPLFVQFCA--NDPEILLNAARR-VEPYCDYVDINL--GCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALN-LNV 226 (436)
Q Consensus 158 ~plivQL~g--~d~e~~~~AA~~-v~~g~D~IdLN~--GCP~---~~~~~~~~Gs~Ll--~~p~~v~eIv~av~~~-~~i 226 (436)
.-+|.=+.+ .+++...++++. ++.|+|.|||-+ .-|. +.+++.+ =-+|- -..+.+.++++.+++. .++
T Consensus 17 ~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~-~rAL~~g~t~~~~lel~~~~r~~~~~~ 95 (265)
T COG0159 17 GALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAH-LRALAAGVTLEDTLELVEEIRAKGVKV 95 (265)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHH-HHHHHCCCCHHHHHHHHHHHHhcCCCC
Confidence 345544444 367888888875 567999999985 4454 1111110 11121 2567888999999854 678
Q ss_pred cEEEEeccCC-ChhhHHHHHHHHHHcCccEEEe-----------------cc--------Cccc------------c---
Q 013813 227 PVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAV-----------------HG--------RTRD------------E--- 265 (436)
Q Consensus 227 PVsVKiRlg~-~~~d~~~~ak~le~aG~d~I~V-----------------Hg--------Rt~~------------~--- 265 (436)
|+.+=.=..+ -.....+|.+.+.++|+|++.| || -|.. +
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY 175 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIY 175 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 8877532211 0123345666677777777665 11 1100 0
Q ss_pred ---cCCCCC---c--c-CHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 266 ---KDGKKF---R--A-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 266 ---~~~~~g---~--a-d~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
..+-+| + . --+.++++|+..++||...=||+++++++++.+. ||||.+|+++..
T Consensus 176 ~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAiV~ 238 (265)
T COG0159 176 YVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAIVK 238 (265)
T ss_pred EEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHHHH
Confidence 011111 1 1 1366888899899999999999999999999986 999999998754
No 178
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=98.02 E-value=9e-05 Score=70.32 Aligned_cols=151 Identities=15% Similarity=0.323 Sum_probs=87.9
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~ 238 (436)
+.++|...|+..+.+.++.+. .|+|.|.+-.. + |. +..+.....+.++++++.+..++.|-+-.
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~--------d--~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~v---- 70 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM--------D--GH-FVPNLTIGPPVVEAIRKVTKLPLDVHLMV---- 70 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc--------c--CC-cCCCcCcCHHHHHHHHhcCCCcEEEEeee----
Confidence 678899999999999997664 58999999421 1 11 11111123445555554443333222212
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccc------------------------------------------c-CCCCC-ccC
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDE------------------------------------------K-DGKKF-RAD 274 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~------------------------------------------~-~~~~g-~ad 274 (436)
.+..++++.+.++|+|+|+||+...+. . .+.++ ..+
T Consensus 71 ~d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 150 (220)
T PRK05581 71 ENPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFI 150 (220)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCccccc
Confidence 123334455557777877776532100 0 01111 123
Q ss_pred HHHHH---HHHhhCC-----CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 275 WNAIK---AVKNALR-----IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 275 ~~~i~---~ik~~~~-----iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
|..+. ++++..+ .+|...|||+. +++.++++. |+|+|.+|++++.+++...
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~-GaD~vvvgSai~~~~d~~~ 209 (220)
T PRK05581 151 PEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEA-GADVFVAGSAVFGAPDYKE 209 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHc-CCCEEEEChhhhCCCCHHH
Confidence 44333 3443322 33568899997 899998874 9999999999998877544
No 179
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.00 E-value=2.2e-05 Score=76.09 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+.+.|++.++|-.-.... + ...+.+.++++.+....||...|||+|.+|++++++. ||+-|.+|+.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~--~--~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~-Ga~kvvigt~ 104 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAE--G--VGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSL-DVNALVFSTI 104 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcC--C--CcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHC-CCCEEEECch
Confidence 478899999999999999986554332 1 1457799999988544599999999999999999986 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||.+++++..
T Consensus 105 a~~~p~~~~~~~~ 117 (232)
T PRK13586 105 VFTNFNLFHDIVR 117 (232)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999987653
No 180
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.99 E-value=0.0008 Score=63.51 Aligned_cols=183 Identities=18% Similarity=0.186 Sum_probs=105.7
Q ss_pred CCCcHHHHHHHHHhCCCeEE-eC-cccchhhccChhhhhhhhhccCCCCCEEEEec-CCCHHHHHHHHHHHcCCCcEEEE
Q 013813 112 DNSELPFRMLCRRYGAEAAY-TP-MLHSRIFTESEKYRNEEFATCKEDRPLFVQFC-ANDPEILLNAARRVEPYCDYVDI 188 (436)
Q Consensus 112 gvtd~~fR~l~~~~Ga~l~~-Te-misa~~l~~~~~~~~~~~~~~~~e~plivQL~-g~d~e~~~~AA~~v~~g~D~IdL 188 (436)
|+++..-=..|.+.|++++- -. --|.+.+.. +........++ ...-.|-++ ..+++.+.+.+. +.++|+|.|
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~--~~a~~l~~~~~-~~~~~V~v~vn~~~~~i~~ia~--~~~~d~Vql 79 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFIFAPKSPRYVSP--EQAREIVAALP-PFVKRVGVFVNEDLEEILEIAE--ELGLDVVQL 79 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecCCCCCCCCCH--HHHHHHHHhCC-CCCcEEEEEeCCCHHHHHHHHH--hcCCCEEEE
Confidence 56666665778888987532 11 122232211 11111112222 211223334 445565555543 337899999
Q ss_pred ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 189 NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 189 N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
|-.- +++ .++.+++..+.++...+.+... ...+. ......|+|++.+...+.....+
T Consensus 80 hg~e----------------~~~----~~~~l~~~~~~~~i~~i~~~~~--~~~~~-~~~~~~~aD~il~dt~~~~~~Gg 136 (203)
T cd00405 80 HGDE----------------SPE----YCAQLRARLGLPVIKAIRVKDE--EDLEK-AAAYAGEVDAILLDSKSGGGGGG 136 (203)
T ss_pred CCCC----------------CHH----HHHHHHhhcCCcEEEEEecCCh--hhHHH-hhhccccCCEEEEcCCCCCCCCC
Confidence 8211 222 2344555456666644444322 11221 23345789999886655432211
Q ss_pred CCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 269 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 269 ~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
.....+|+.+++++ .++||++.||| +++.+.++++..+++||-+++++...|-.
T Consensus 137 ~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 137 TGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 11257999988876 68999999999 89999999997449999999998877664
No 181
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.98 E-value=0.00038 Score=65.16 Aligned_cols=142 Identities=19% Similarity=0.253 Sum_probs=95.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
.+.|+++.+.-.++... .+-...+.|+|+|-++.-. .++.+.++++.+++ .++++.+=+ +
T Consensus 52 ~~~~i~~~~~v~~~~~~-~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~-~g~~~~v~~-~- 111 (202)
T cd04726 52 PDKIIVADLKTADAGAL-EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKK-YGKEVQVDL-I- 111 (202)
T ss_pred CCCEEEEEEEeccccHH-HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHH-cCCeEEEEE-e-
Confidence 46789888887777532 1122356799999999421 13446677777764 355555421 1
Q ss_pred CChhhHHHHHHHHHHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+..+..+..+ +.+.|+|++.++ +++.. ..+ .....+.++++++..++||++.|||+ .+++.++++. |+|+|.
T Consensus 112 -~~~t~~e~~~-~~~~~~d~v~~~~~~~~~-~~~--~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~~-Gad~vv 184 (202)
T cd04726 112 -GVEDPEKRAK-LLKLGVDIVILHRGIDAQ-AAG--GWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKKA-GADIVI 184 (202)
T ss_pred -CCCCHHHHHH-HHHCCCCEEEEcCccccc-ccC--CCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHHhc-CCCEEE
Confidence 1123334444 667899999885 33322 111 23456778888876789999999996 9999999986 999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+|+++.....
T Consensus 185 vGsai~~~~d 194 (202)
T cd04726 185 VGRAITGAAD 194 (202)
T ss_pred EeehhcCCCC
Confidence 9999876555
No 182
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.98 E-value=3.3e-05 Score=75.37 Aligned_cols=88 Identities=19% Similarity=0.131 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.+.++.+++.|+..++|-.=.... + .+.+.+.++++.+.+.+||...|||+|.++++++++. |||-|++|+.
T Consensus 31 ~~p~~~a~~~~~~g~~~lhivDLd~a~--g--~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~-Ga~~vvigT~ 105 (243)
T TIGR01919 31 GSLESAAKWWEQGGAEWIHLVDLDAAF--G--GGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTG-GRARVNGGTA 105 (243)
T ss_pred CCHHHHHHHHHhCCCeEEEEEECCCCC--C--CcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHc-CCCEEEECch
Confidence 466788888999999998875332221 1 1467899999999999999999999999999999996 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.||+++.++..
T Consensus 106 a~~~p~~~~~~~~ 118 (243)
T TIGR01919 106 ALENPWWAAAVIR 118 (243)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999987653
No 183
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.98 E-value=0.00046 Score=72.67 Aligned_cols=134 Identities=18% Similarity=0.235 Sum_probs=88.4
Q ss_pred EecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHH
Q 013813 163 QFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 163 QL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~ 242 (436)
.+++. +.... -..++.|+|+|-++... +...+.++++.+++ .++++.+.+ + +..+..
T Consensus 65 kl~d~-g~~~v--~~a~~aGAdgV~v~g~~----------------~~~~~~~~i~~a~~-~G~~~~~g~-~--s~~t~~ 121 (430)
T PRK07028 65 KTMDT-GAIEV--EMAAKAGADIVCILGLA----------------DDSTIEDAVRAARK-YGVRLMADL-I--NVPDPV 121 (430)
T ss_pred eeccc-hHHHH--HHHHHcCCCEEEEecCC----------------ChHHHHHHHHHHHH-cCCEEEEEe-c--CCCCHH
Confidence 44554 44322 23356788998876211 11224566666665 477766642 1 212334
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+.++.+.+.|+|+|.++.....+.. +...++.++++++..++||++.||| +.+.+.++++. |+|+|.+|++++..
T Consensus 122 e~~~~a~~~GaD~I~~~pg~~~~~~---~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~a-GAdgv~vGsaI~~~ 196 (430)
T PRK07028 122 KRAVELEELGVDYINVHVGIDQQML---GKDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAA-GADIVIVGGNIIKS 196 (430)
T ss_pred HHHHHHHhcCCCEEEEEeccchhhc---CCChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHc-CCCEEEEChHHcCC
Confidence 4567778899999988743322211 1234678999998889999999999 57889999886 99999999999876
Q ss_pred Cc
Q 013813 323 PA 324 (436)
Q Consensus 323 P~ 324 (436)
+.
T Consensus 197 ~d 198 (430)
T PRK07028 197 AD 198 (430)
T ss_pred CC
Confidence 54
No 184
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.96 E-value=2.7e-05 Score=75.36 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.++.++|+.+++.|++.++|-.-.... + ...+.+.++++.+.+.+||...|||++.+|+++++.. ||+-|.+|+.
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~--~--~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~-Ga~~viigt~ 109 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIM--G--RGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKR-GASRVIVGTE 109 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcccc--C--CCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHc-CCCeEEEcce
Confidence 478899999999999999987665431 2 2578899999999999999999999999999999986 9999999999
Q ss_pred HhhCCccchhhhh
Q 013813 319 LLENPALFAGFRT 331 (436)
Q Consensus 319 al~nP~lf~~i~~ 331 (436)
++.| .++.++..
T Consensus 110 ~~~~-~~~~~~~~ 121 (233)
T cd04723 110 TLPS-DDDEDRLA 121 (233)
T ss_pred eccc-hHHHHHHH
Confidence 9999 88887654
No 185
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.96 E-value=0.00017 Score=70.85 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=98.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-- 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl-- 234 (436)
..|+.||+.-||+......| ...|+|+|.+|.-|-.. + ++ -+.+..+...+.+.-+.+.. ++.|...++.
T Consensus 79 ~~p~GvnvL~nd~~aal~iA--~a~ga~FIRv~~~~g~~-~-~d--~G~~~~~a~e~~r~r~~l~~--~v~i~adV~~kh 150 (257)
T TIGR00259 79 SIPLGINVLRNDAVAALAIA--MAVGAKFIRVNVLTGVY-A-SD--QGIIEGNAGELIRYKKLLGS--EVKILADIVVKH 150 (257)
T ss_pred CCCeeeeeecCCCHHHHHHH--HHhCCCEEEEccEeeeE-e-cc--cccccccHHHHHHHHHHcCC--CcEEEeceeecc
Confidence 46899999999887544433 23478999998544332 1 11 11333344444444444442 3444333322
Q ss_pred CC--ChhhHHHHHHHHHHcC-ccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCc
Q 013813 235 FP--NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 235 g~--~~~d~~~~ak~le~aG-~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGa 310 (436)
+. ......+.++.....| +|+|+|+|..... +.||+.++.+++.. ++||+.+|||+ ++.+.++++. +
T Consensus 151 ~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~------~~d~~~l~~vr~~~~~~PvllggGvt-~eNv~e~l~~--a 221 (257)
T TIGR00259 151 AVHLGNRDLESIALDTVERGLADAVILSGKTTGT------EVDLELLKLAKETVKDTPVLAGSGVN-LENVEELLSI--A 221 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCC------CCCHHHHHHHHhccCCCeEEEECCCC-HHHHHHHHhh--C
Confidence 11 1234556677666655 9999999875432 57999999999855 79999999996 7999999985 9
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|||.+|+++= +|-
T Consensus 222 dGviVgS~~K-~~G 234 (257)
T TIGR00259 222 DGVIVATTIK-KDG 234 (257)
T ss_pred CEEEECCCcc-cCC
Confidence 9999998865 444
No 186
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.95 E-value=3.1e-05 Score=74.91 Aligned_cols=134 Identities=18% Similarity=0.239 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc---ccCccEEEEeccCCCh--------hh
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NLNVPVSCKIRVFPNL--------QD 240 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~---~~~iPVsVKiRlg~~~--------~d 240 (436)
..++.+.++.|+|+|++-+- +|...-.+.+.+.+.++.+++ ..++||.+=.-+ .+. +.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~----------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVIN----------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEE----------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeecc----------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHH
Confidence 56666778899999998641 222222334444444444443 347888777322 111 13
Q ss_pred HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc----EEEccCC------CCHHHHHHHHHhcCc
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP----VLANGNV------RHMEDVQKCLEETGC 310 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP----VianGGI------~s~eda~~~l~~tGa 310 (436)
+...++.+.++|+|+|-..-.. ..+...-+.+.++++.+...+| |.++||| .+.+++.++++. ||
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~----~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~a-Ga 222 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGK----PVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEA-GA 222 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SS----SSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHT-TH
T ss_pred HHHHHHHHHHhCCCEEEecCCc----cccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHc-CC
Confidence 5677888899999999553221 1111123445556666666789 9999999 999999999997 99
Q ss_pred --ceeeeehHHhh
Q 013813 311 --EGVLSAESLLE 321 (436)
Q Consensus 311 --DgVmIGRgal~ 321 (436)
-|++.||.++.
T Consensus 223 ~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 223 DRIGTSSGRNIWQ 235 (236)
T ss_dssp SEEEEEEHHHHHT
T ss_pred hhHHHHHHHHHHc
Confidence 89999998764
No 187
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.93 E-value=0.00019 Score=68.17 Aligned_cols=149 Identities=21% Similarity=0.301 Sum_probs=106.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEE-ecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDI-NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdL-N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiR 233 (436)
..-|+.|+ +-+|+.|..| +++|+|.||| |+.|=+.. | ..-..+.+.++.++.|+-+ +++++|-+-
T Consensus 60 s~lPICVS--aVep~~f~~a---V~AGAdliEIGNfDsFY~q------G--r~f~a~eVL~Lt~~tR~LLP~~~LsVTVP 126 (242)
T PF04481_consen 60 SNLPICVS--AVEPELFVAA---VKAGADLIEIGNFDSFYAQ------G--RRFSAEEVLALTRETRSLLPDITLSVTVP 126 (242)
T ss_pred CCCCeEee--cCCHHHHHHH---HHhCCCEEEecchHHHHhc------C--CeecHHHHHHHHHHHHHhCCCCceEEecC
Confidence 46788876 6788888766 4679999999 66653321 1 1224577888888888766 688888876
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCC-C-CC-----ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-K-KF-----RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~-~-~g-----~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
-....++-+++|..|+++|+|.|.--|.+...... + .| .+.+.....|.+.+++||+..-|+.+.--= -.+.
T Consensus 127 HiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~P-mAia 205 (242)
T PF04481_consen 127 HILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAP-MAIA 205 (242)
T ss_pred ccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHH-HHHH
Confidence 55567788899999999999999888877643211 0 00 123444556778889999999999876533 3344
Q ss_pred hcCcceeeeehHH
Q 013813 307 ETGCEGVLSAESL 319 (436)
Q Consensus 307 ~tGaDgVmIGRga 319 (436)
.||.||.||.+.
T Consensus 206 -aGAsGVGVGSav 217 (242)
T PF04481_consen 206 -AGASGVGVGSAV 217 (242)
T ss_pred -cCCcccchhHHh
Confidence 399999999765
No 188
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.86 E-value=0.00049 Score=66.28 Aligned_cols=147 Identities=17% Similarity=0.206 Sum_probs=92.6
Q ss_pred CCCCEEEEecC-CCHHHHHHHHHHHcC--CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 156 EDRPLFVQFCA-NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 156 ~e~plivQL~g-~d~e~~~~AA~~v~~--g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
.+..+..+-.| .+.++....|++..+ +.+.|-|-.- .+ .-.|+-|+-...+-.+.+.+. ++-|.--+
T Consensus 61 ~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi-------~D--~~~L~PD~~etl~Aae~Lv~e-GF~VlPY~ 130 (247)
T PF05690_consen 61 SGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVI-------GD--DKTLLPDPIETLKAAEILVKE-GFVVLPYC 130 (247)
T ss_dssp CTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--B-------S---TTT--B-HHHHHHHHHHHHHT-T-EEEEEE
T ss_pred cCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEe-------CC--CCCcCCChhHHHHHHHHHHHC-CCEEeecC
Confidence 45566777666 578999999988754 4688777631 11 124666766655555555432 44444332
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
. +| .-+|+.|+++||..|---|-... .+.|-.+...++.+.+..++|||.-+||.++.|+..+++. |||+
T Consensus 131 --~---~D-~v~akrL~d~GcaavMPlgsPIG---Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMEl-G~da 200 (247)
T PF05690_consen 131 --T---DD-PVLAKRLEDAGCAAVMPLGSPIG---SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMEL-GADA 200 (247)
T ss_dssp ------S--HHHHHHHHHTT-SEBEEBSSSTT---T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHT-T-SE
T ss_pred --C---CC-HHHHHHHHHCCCCEEEecccccc---cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHc-CCce
Confidence 1 23 34799999999999866554332 2334567788999999999999999999999999999997 9999
Q ss_pred eeeehHHhhC
Q 013813 313 VLSAESLLEN 322 (436)
Q Consensus 313 VmIGRgal~n 322 (436)
|++.++...-
T Consensus 201 VLvNTAiA~A 210 (247)
T PF05690_consen 201 VLVNTAIAKA 210 (247)
T ss_dssp EEESHHHHTS
T ss_pred eehhhHHhcc
Confidence 9999987543
No 189
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.85 E-value=0.00011 Score=67.65 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=60.9
Q ss_pred HHHHHHcCccEEEeccCccccc-CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++.+.+.|+|+|.+........ .+...+..++.++++++..++||++.|||. .+++.++++. |+|+|.+|++++.++
T Consensus 108 ~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~-Ga~~i~~g~~i~~~~ 185 (196)
T cd00564 108 ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLAA-GADGVAVISAITGAD 185 (196)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHc-CCCEEEEehHhhcCC
Confidence 4556778999998865533211 111125678999999988899999999995 7999998885 999999999998766
Q ss_pred ccc
Q 013813 324 ALF 326 (436)
Q Consensus 324 ~lf 326 (436)
...
T Consensus 186 ~~~ 188 (196)
T cd00564 186 DPA 188 (196)
T ss_pred CHH
Confidence 543
No 190
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.85 E-value=0.00057 Score=66.51 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=97.1
Q ss_pred EEEEecC-CCHHHHHHHHHHHcC-C-------CcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE
Q 013813 160 LFVQFCA-NDPEILLNAARRVEP-Y-------CDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 229 (436)
Q Consensus 160 livQL~g-~d~e~~~~AA~~v~~-g-------~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs 229 (436)
+..+-.| .+.++....|++..+ + .+.|-|-. |-| -.|+-|+-...+..+.+.+. ++-|.
T Consensus 73 ~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~----------~~LlPD~~etl~Aae~Lv~e-GF~Vl 141 (267)
T CHL00162 73 LLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDP----------KYLLPDPIGTLKAAEFLVKK-GFTVL 141 (267)
T ss_pred ECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCC----------cccCCChHHHHHHHHHHHHC-CCEEe
Confidence 3344333 568888888876643 2 46666652 222 35777776666665555432 34443
Q ss_pred EEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcC
Q 013813 230 CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 230 VKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tG 309 (436)
.- + .+|. -+|++|+++||..|---|-... .+.|-.+...++.|.+..++||+..+||.+++|+..+++. |
T Consensus 142 PY--~---~~D~-v~a~rLed~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmEl-G 211 (267)
T CHL00162 142 PY--I---NADP-MLAKHLEDIGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMEL-G 211 (267)
T ss_pred ec--C---CCCH-HHHHHHHHcCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHc-C
Confidence 33 1 2333 4799999999999866544332 2334567788999999999999999999999999999997 9
Q ss_pred cceeeeehHHhh
Q 013813 310 CEGVLSAESLLE 321 (436)
Q Consensus 310 aDgVmIGRgal~ 321 (436)
||||.+.+|+..
T Consensus 212 aDgVL~nSaIak 223 (267)
T CHL00162 212 ASGVLLNTAVAQ 223 (267)
T ss_pred CCEEeecceeec
Confidence 999999999864
No 191
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.81 E-value=9.8e-05 Score=71.07 Aligned_cols=85 Identities=18% Similarity=0.302 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHH-cCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~-aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++....+..+.+ .|...|-+-.... +..+.+.+.++.+++.+ ++|++..|||+|.++++++++. |||+|++|
T Consensus 135 ~~~aa~~~lA~~~~g~~~vYlE~gs~-----~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~a-GAD~VVVG 208 (223)
T TIGR01768 135 EDLAAYAAMAEEMLGMPIIYLEAGSG-----APEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEA-GADTIVTG 208 (223)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecCC-----CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHc-CCCEEEEC
Confidence 444444444444 6777666642211 12256789999999998 9999999999999999999986 99999999
Q ss_pred hHHhhCCccchhh
Q 013813 317 ESLLENPALFAGF 329 (436)
Q Consensus 317 Rgal~nP~lf~~i 329 (436)
..++.||.++.++
T Consensus 209 s~~~~dp~~~~~~ 221 (223)
T TIGR01768 209 NVIEEDVDKALET 221 (223)
T ss_pred cHHhhCHHHHHHh
Confidence 9999999877653
No 192
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.79 E-value=0.0006 Score=65.91 Aligned_cols=144 Identities=17% Similarity=0.366 Sum_probs=98.2
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEec
Q 013813 160 LFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 233 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiR 233 (436)
+.++|++.|+..+.+-++.++. |+|.+-+-. | +|+. .+| -++++++++.. ++++.+|+-
T Consensus 9 i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~-----~~G----------~~~v~~lr~~~~~~~lDvHLm 73 (228)
T PTZ00170 9 IAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL-----SFG----------PPVVKSLRKHLPNTFLDCHLM 73 (228)
T ss_pred EehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc-----CcC----------HHHHHHHHhcCCCCCEEEEEC
Confidence 6788999999999999988865 788765553 2 3331 122 35667777776 899999964
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccc-----------c-----------------------------------C
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------K-----------------------------------D 267 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-----------~-----------------------------------~ 267 (436)
. .+...+++.+.++|+|.|+||+-.... . .
T Consensus 74 ~----~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~p 149 (228)
T PTZ00170 74 V----SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEP 149 (228)
T ss_pred C----CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhccc
Confidence 2 456667788889999999998653211 0 0
Q ss_pred CCCCcc----CHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 268 GKKFRA----DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 268 ~~~g~a----d~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.|.. .++.++++++.. ...|...|||+ .+.+..+.+. |+|.+++||++..++.
T Consensus 150 G~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~~a-Gad~iVvGsaI~~a~d 209 (228)
T PTZ00170 150 GFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAADA-GANVIVAGSSIFKAKD 209 (228)
T ss_pred CCCCcEecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHHHc-CCCEEEEchHHhCCCC
Confidence 011110 123345555543 46788999997 5788888875 9999999999877665
No 193
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.78 E-value=0.0017 Score=62.63 Aligned_cols=191 Identities=19% Similarity=0.198 Sum_probs=113.5
Q ss_pred cHHHHHHHH--HhCCCeEEeCcccchhhccC-hhhhhhhhh------ccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcE
Q 013813 115 ELPFRMLCR--RYGAEAAYTPMLHSRIFTES-EKYRNEEFA------TCKEDRPLFVQFCANDPEILLNAARRVEPYCDY 185 (436)
Q Consensus 115 d~~fR~l~~--~~Ga~l~~Temisa~~l~~~-~~~~~~~~~------~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~ 185 (436)
|.+.|...+ +.|+|.+.-|=.-+..|... .+.....+. ...-..|+.|++.-||+-.....| ...|+|+
T Consensus 34 d~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA--~a~gA~F 111 (263)
T COG0434 34 DRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAALAIA--YAVGADF 111 (263)
T ss_pred HHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeeccccHHHHHHH--HhcCCCE
Confidence 344444443 33677776665544444332 111111110 124568999999998875433222 1237899
Q ss_pred EEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHH-HHHcCccEEEeccCc
Q 013813 186 VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKM-LEDAGCSLLAVHGRT 262 (436)
Q Consensus 186 IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~-le~aG~d~I~VHgRt 262 (436)
|-+|.-|-....-. +.+..+-..+.+.-..+...+. ..|-||.-......+..+.++- ++..++|+++++|..
T Consensus 112 IRVN~~tg~~~tdq----Giieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~ 187 (263)
T COG0434 112 IRVNVLTGAYATDQ----GIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSR 187 (263)
T ss_pred EEEEeeeceEeccc----ceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEeccc
Confidence 99996553321111 1233333344444444442221 1334443332221233444444 778889999999875
Q ss_pred ccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 263 RDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 263 ~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
... ++|.+.++.+++.+++||+++-|++ ++.+.++|+. |||+++|+.+=
T Consensus 188 TG~------~~d~~el~~a~~~~~~pvlvGSGv~-~eN~~~~l~~--adG~IvgT~lK 236 (263)
T COG0434 188 TGS------PPDLEELKLAKEAVDTPVLVGSGVN-PENIEELLKI--ADGVIVGTSLK 236 (263)
T ss_pred CCC------CCCHHHHHHHHhccCCCEEEecCCC-HHHHHHHHHH--cCceEEEEEEc
Confidence 431 6889999999999999999999996 7899999986 99999997553
No 194
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.76 E-value=0.0031 Score=65.63 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=98.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
.+.++.+-|.-.|+..+. +-...+.|+|.+-+|... ..+.+.+.++.+++. ++-+.+.+ +.
T Consensus 225 ~~~~I~~DLK~~Di~~~v-v~~~a~aGAD~vTVH~ea----------------~~~ti~~ai~~akk~-GikvgVD~-ln 285 (391)
T PRK13307 225 PDAFIVADLKTLDTGNLE-ARMAADATADAVVISGLA----------------PISTIEKAIHEAQKT-GIYSILDM-LN 285 (391)
T ss_pred CCCeEEEEecccChhhHH-HHHHHhcCCCEEEEeccC----------------CHHHHHHHHHHHHHc-CCEEEEEE-cC
Confidence 467899999999999886 223456799999999532 123466677776654 54444421 21
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
..+..+.++.+ ..++|.|.+|.....+.. ..-|+.++++++. .+++|...|||+ .+++.++++. |+|.+.
T Consensus 286 --p~tp~e~i~~l-~~~vD~Vllht~vdp~~~----~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~a-GADivV 356 (391)
T PRK13307 286 --VEDPVKLLESL-KVKPDVVELHRGIDEEGT----EHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKA-GADILV 356 (391)
T ss_pred --CCCHHHHHHHh-hCCCCEEEEccccCCCcc----cchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHc-CCCEEE
Confidence 13344555655 679999999942222211 3357788888874 478999999999 8899998875 999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+||++...++
T Consensus 357 VGsaIf~a~D 366 (391)
T PRK13307 357 VGRAITKSKD 366 (391)
T ss_pred EeHHHhCCCC
Confidence 9999876555
No 195
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.76 E-value=0.0018 Score=63.18 Aligned_cols=193 Identities=17% Similarity=0.140 Sum_probs=123.6
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCcccc---hhhccChhhh-h------hhhhccCCCCCEEEEe--cCCCHHHHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPMLHS---RIFTESEKYR-N------EEFATCKEDRPLFVQF--CANDPEILLNAAR 177 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Temisa---~~l~~~~~~~-~------~~~~~~~~e~plivQL--~g~d~e~~~~AA~ 177 (436)
|.++-|..--+++.+.|.+.+|+--... .++....... . ..+ ......|+++-+ +..+++.+.+.++
T Consensus 13 ~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I-~~~~~~Pv~~D~~~G~g~~~~~~~~v~ 91 (243)
T cd00377 13 LPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRI-ARAVDLPVIADADTGYGNALNVARTVR 91 (243)
T ss_pred ecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHH-HhhccCCEEEEcCCCCCCHHHHHHHHH
Confidence 5577788888899999999877542211 1111110000 0 001 112357888653 3346677888775
Q ss_pred H-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCc--cEEEEec-----cC-CChhhHHHHHHHH
Q 013813 178 R-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV--PVSCKIR-----VF-PNLQDTIKYAKML 248 (436)
Q Consensus 178 ~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i--PVsVKiR-----lg-~~~~d~~~~ak~l 248 (436)
. ++.|+++|.|.-+..-+ +.+..|..-+-.++...+.++++++..+- ++.|=-| .+ ...+++++-++..
T Consensus 92 ~~~~~G~~gv~iED~~~~k--~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay 169 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPK--KCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAY 169 (243)
T ss_pred HHHHcCCEEEEEecCCCCc--cccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHH
Confidence 5 46699999997654321 22334555555677777777777665532 5555555 33 4678999999999
Q ss_pred HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CC--CCHHHHHHHHHhcCcceeeeehHHh
Q 013813 249 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NV--RHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 249 e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI--~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
.++|+|.|-+++.+ +.+.++++.+.+++||+++- +- .+.+++. + -|+..|.+|-.++
T Consensus 170 ~~AGAD~v~v~~~~-----------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~---~-lG~~~v~~~~~~~ 230 (243)
T cd00377 170 AEAGADGIFVEGLK-----------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELA---E-LGVRRVSYGLALL 230 (243)
T ss_pred HHcCCCEEEeCCCC-----------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHH---H-CCCeEEEEChHHH
Confidence 99999999998654 45788999999999988763 22 3444443 3 4999999986543
No 196
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.71 E-value=0.00033 Score=68.84 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=46.2
Q ss_pred ccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 272 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 272 ~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
..|++...++...+ ++.+|+-+||.+++|+..+... |+|+|.||+++|..|+.-..+
T Consensus 193 ~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~-G~davLVGe~lm~~~d~~~~~ 251 (254)
T PF00218_consen 193 EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARA-GADAVLVGEALMRSPDPGEAL 251 (254)
T ss_dssp CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTT-T-SEEEESHHHHTSSSHHHHH
T ss_pred ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHC-CCCEEEECHHHhCCCCHHHHH
Confidence 56777777777765 5889999999999999998875 999999999999999876544
No 197
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.70 E-value=0.00022 Score=67.10 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=58.2
Q ss_pred HHHHHHcCccEEEeccCccccc-CCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+..+.+.|+|+|.++.-..... .+......++.++++++..+ +||++.||| +.+++.++++. |+|+|.+|++++.+
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~-Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEA-GADGVAVVSAITGA 194 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHc-CCCEEEEeHHhhcC
Confidence 4455678999998874433221 11111224889999998877 999999999 68999999985 99999999998765
Q ss_pred Cc
Q 013813 323 PA 324 (436)
Q Consensus 323 P~ 324 (436)
+.
T Consensus 195 ~d 196 (212)
T PRK00043 195 ED 196 (212)
T ss_pred CC
Confidence 54
No 198
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.68 E-value=0.00014 Score=70.03 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh-cCcceeeeeh
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~-tGaDgVmIGR 317 (436)
.++.++|+.+.+.|++.|+|-.-.... +. +.+++.++++.+. +||...|||+|.+|+++++.. .+|+-|.+|+
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~~--~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIV--GL--GDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccccc--CC--cchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 578899999999999999886554431 22 5678999999987 499999999999999998652 3699999999
Q ss_pred HHhhCCccchhhh
Q 013813 318 SLLENPALFAGFR 330 (436)
Q Consensus 318 gal~nP~lf~~i~ 330 (436)
.++.||.++.++.
T Consensus 110 ~a~~~p~~l~~~~ 122 (221)
T TIGR00734 110 ETLDITELLRECY 122 (221)
T ss_pred hhhCCHHHHHHhh
Confidence 9999999888764
No 199
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.65 E-value=0.00092 Score=65.35 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=46.1
Q ss_pred ccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 272 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 272 ~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
..|.+...++...+ +..+|+-+||.|++|+.++.. . +|+|.||++++..++.-..+
T Consensus 186 ~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~-~-~davLvG~~lm~~~d~~~~~ 243 (247)
T PRK13957 186 QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRK-L-VDAALIGTYFMEKKDIRKAW 243 (247)
T ss_pred eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH-h-CCEEEECHHHhCCCCHHHHH
Confidence 46777777777765 577899999999999999775 3 99999999999998865543
No 200
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.65 E-value=0.00058 Score=69.55 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCc----cCHHHHHHHHhhC
Q 013813 210 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNAL 285 (436)
Q Consensus 210 p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~----ad~~~i~~ik~~~ 285 (436)
.+...+.++.+++.+++||+++++. .+.++..++++.++++|+|+|.+|.-.........+. .-++.++.+++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 4555666667777778999999865 4557778999999999999999964321111111111 1357788999988
Q ss_pred CCcEEEc--cCCCCHHHHHHHHHhcCcceeeee
Q 013813 286 RIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 286 ~iPVian--GGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++||++. +++.+..++.+.++..|+|+|.+.
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999865 566677788888888899998764
No 201
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.63 E-value=0.003 Score=60.20 Aligned_cols=149 Identities=21% Similarity=0.222 Sum_probs=92.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchh--h--hcCccc------ccccCChHHHHHHHHHHh----
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRI--A--RRGNYG------AFLMDNLPLVKSLVEKLA---- 221 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~--~--~~~~~G------s~Ll~~p~~v~eIv~av~---- 221 (436)
..+++.=+-+.+++++.+.++.+ +.|+..||+-+--|... . -+..|+ +.-.-+.+.+...+++=.
T Consensus 9 ~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 9 KLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV 88 (206)
T ss_pred hCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE
Confidence 35677778899999999999765 55899999976444311 0 011122 111223444433332210
Q ss_pred ------------cccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CC
Q 013813 222 ------------LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 287 (436)
Q Consensus 222 ------------~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~i 287 (436)
...++++... .....+ +..+.+.|+|+|.+..- ....+++++.+++.. ++
T Consensus 89 sp~~~~~v~~~~~~~~~~~~~G------~~t~~E-~~~A~~~Gad~vk~Fpa---------~~~G~~~l~~l~~~~~~~i 152 (206)
T PRK09140 89 TPNTDPEVIRRAVALGMVVMPG------VATPTE-AFAALRAGAQALKLFPA---------SQLGPAGIKALRAVLPPDV 152 (206)
T ss_pred CCCCCHHHHHHHHHCCCcEEcc------cCCHHH-HHHHHHcCCCEEEECCC---------CCCCHHHHHHHHhhcCCCC
Confidence 0112232222 111122 34455688888876321 123468899999877 59
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
|+++.||| +.+.+.++++. |+++|.++++++...
T Consensus 153 pvvaiGGI-~~~n~~~~~~a-Ga~~vav~s~l~~~~ 186 (206)
T PRK09140 153 PVFAVGGV-TPENLAPYLAA-GAAGFGLGSALYRPG 186 (206)
T ss_pred eEEEECCC-CHHHHHHHHHC-CCeEEEEehHhcccc
Confidence 99999999 68999999986 999999999997643
No 202
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=1.8e-05 Score=81.15 Aligned_cols=135 Identities=24% Similarity=0.350 Sum_probs=112.1
Q ss_pred EEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCccc
Q 013813 185 YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 264 (436)
Q Consensus 185 ~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~ 264 (436)
-.++|.|||......++.|..++..+..+..+.+..++..+.|+ +|+|+-.+..+...+++.+++.| .+.+|+|..-
T Consensus 289 l~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f 365 (477)
T KOG2334|consen 289 LRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIF 365 (477)
T ss_pred hhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhcccc
Confidence 47888999998888888888888899999999999999999999 99999888889999999999998 5678888744
Q ss_pred ccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 265 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 265 ~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
.+..+ ++.|+.++.+.....+++++||.+-...+- ..+++..||..++...+-.+|..
T Consensus 366 ~r~~~--pa~~~~~k~~l~~~~~~~~~~~~~ye~~~~----~d~lf~si~~~~~~~~~ssi~~~ 423 (477)
T KOG2334|consen 366 DRPTD--PAKWDTPKMVLADLCVKTKANGPVYETVQR----TDKLFSSIATARGQKYNSSIWSP 423 (477)
T ss_pred cccCC--CcCCCCHHHHHHHhhhhhcCCCcchhhhhh----hhhhhHHHhhhhhhhhhccccCc
Confidence 33333 788998888888889999999999766653 23478889999999988888764
No 203
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.57 E-value=0.00047 Score=66.82 Aligned_cols=81 Identities=23% Similarity=0.353 Sum_probs=60.6
Q ss_pred hhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC-cEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 238 LQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 238 ~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i-PVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.++....+..+ +-.|...+.+-.... ...+.+.+.++++++.+++ ||++.|||++.+++++++.. |||+|.+
T Consensus 139 ~~~~~~~~~lA~~~~g~~~vYle~gs~-----~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~-GAD~VVV 212 (232)
T PRK04169 139 KPDIAAYAALAAEYLGMPIVYLEYGGG-----AGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAA-GADTIVV 212 (232)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEECCCC-----CCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHh-CCCEEEE
Confidence 34444433333 335655554432221 1125788999999999988 99999999999999998886 9999999
Q ss_pred ehHHhhCCc
Q 013813 316 AESLLENPA 324 (436)
Q Consensus 316 GRgal~nP~ 324 (436)
|..+..||.
T Consensus 213 GSai~~d~~ 221 (232)
T PRK04169 213 GNIIEEDPK 221 (232)
T ss_pred ChHHhhCHH
Confidence 999999988
No 204
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.57 E-value=0.0028 Score=59.10 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=55.9
Q ss_pred HHHHHcCccEEEeccCccccc-CCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 246 KMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
..+.+.|+|++.+........ ........++.++++++.. ++||++.||| +.+++.++++ .|+|+|.+|++++...
T Consensus 110 ~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~-~G~~gva~~~~i~~~~ 187 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLA-AGADGVAVVSAIMQAA 187 (196)
T ss_pred HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-cCCCEEEEhHHhhCCC
Confidence 346678999998743322211 1111234688899988764 6999999999 5899999887 5999999999998654
Q ss_pred c
Q 013813 324 A 324 (436)
Q Consensus 324 ~ 324 (436)
+
T Consensus 188 d 188 (196)
T TIGR00693 188 D 188 (196)
T ss_pred C
Confidence 4
No 205
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.53 E-value=0.0017 Score=60.73 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=91.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCc-----hhhhcCcc-----cccccCChHHHHHHH---------
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQ-----RIARRGNY-----GAFLMDNLPLVKSLV--------- 217 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~-----~~~~~~~~-----Gs~Ll~~p~~v~eIv--------- 217 (436)
.|++.=+-+.+++++.+.++.+ +.|++.|++.+--|. ...++. | |+...-+.+.+.+.+
T Consensus 4 ~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~-~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKE-FPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHH-CCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 4666668888888888888655 557899999764332 111111 1 333333344443333
Q ss_pred --------HHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCc
Q 013813 218 --------EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 288 (436)
Q Consensus 218 --------~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iP 288 (436)
+..+. .+.++.+-+. +.+ + +..+.++|+|+|-+.... ..-.++++.+++.. ++|
T Consensus 83 p~~~~~~~~~~~~-~~~~~i~gv~---t~~---e-~~~A~~~Gad~i~~~p~~---------~~g~~~~~~l~~~~~~~p 145 (190)
T cd00452 83 PGLDPEVVKAANR-AGIPLLPGVA---TPT---E-IMQALELGADIVKLFPAE---------AVGPAYIKALKGPFPQVR 145 (190)
T ss_pred CCCCHHHHHHHHH-cCCcEECCcC---CHH---H-HHHHHHCCCCEEEEcCCc---------ccCHHHHHHHHhhCCCCe
Confidence 22222 2444444322 222 2 445568999999884311 12357788888765 699
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
+++.||| +.+.+.++++. |+++|.+|..+.
T Consensus 146 ~~a~GGI-~~~n~~~~~~~-G~~~v~v~s~i~ 175 (190)
T cd00452 146 FMPTGGV-SLDNAAEWLAA-GVVAVGGGSLLP 175 (190)
T ss_pred EEEeCCC-CHHHHHHHHHC-CCEEEEEchhcc
Confidence 9999999 89999999986 899999998887
No 206
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.51 E-value=0.0026 Score=63.42 Aligned_cols=81 Identities=17% Similarity=0.347 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CCCCHHHHHHHHHhcCcceeeeeh
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+..+..+..++.|+|+|.+.-.+.-+.+......+++.++++++.+++|+++-| ||. .+++.++++. |+++|-+++
T Consensus 154 ~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-~e~~~~~i~~-G~~kinv~T 231 (281)
T PRK06806 154 STTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-PEDFKKCIQH-GIRKINVAT 231 (281)
T ss_pred CHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHHHc-CCcEEEEhH
Confidence 334433444567999997732222222222235789999999999999999999 996 5889998885 999999999
Q ss_pred HHhhC
Q 013813 318 SLLEN 322 (436)
Q Consensus 318 gal~n 322 (436)
++..+
T Consensus 232 ~i~~a 236 (281)
T PRK06806 232 ATFNS 236 (281)
T ss_pred HHHHH
Confidence 99884
No 207
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.0033 Score=60.42 Aligned_cols=134 Identities=17% Similarity=0.243 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHcC--CCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~--g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~ 242 (436)
+.+.++....|++..+ +.|.|-|-. |++. .|+-|+-...+-.+.+.+. ++-|..- ..+|.
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~etl~Aae~Lv~e-GF~VlPY-----~~dD~- 141 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIETLKAAEQLVKE-GFVVLPY-----TTDDP- 141 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChHHHHHHHHHHHhC-CCEEeec-----cCCCH-
Confidence 4578999999988755 467777763 3332 3666655444444443322 3333322 22343
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
-+|++|+++||..|-=-+-... ...|..+-..++.|.+..++|||.--||.++.|+...++. |||+|++.++.-
T Consensus 142 v~arrLee~GcaavMPl~aPIG---Sg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMEl-G~DaVL~NTAiA 215 (262)
T COG2022 142 VLARRLEEAGCAAVMPLGAPIG---SGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMEL-GADAVLLNTAIA 215 (262)
T ss_pred HHHHHHHhcCceEecccccccc---CCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhc-ccceeehhhHhh
Confidence 4799999999988743332222 2234556677888888889999999999999999999997 999999998763
No 208
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.45 E-value=0.0039 Score=62.23 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CCCCHHHHHHHHHhcCcceeeeeh
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+..+..+..++.|+|+|.+.-.+.-+.+......+++.++++++.+++|+++-| ||. .+++.++++. |+++|-|++
T Consensus 154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~i~~~i~~-Gi~kiNv~T 231 (282)
T TIGR01859 154 DPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQIKKAIKL-GIAKINIDT 231 (282)
T ss_pred CHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHHHHc-CCCEEEECc
Confidence 334433334458999998632322222222345789999999999999999999 997 5788898886 999999998
Q ss_pred HHh
Q 013813 318 SLL 320 (436)
Q Consensus 318 gal 320 (436)
.+.
T Consensus 232 ~l~ 234 (282)
T TIGR01859 232 DCR 234 (282)
T ss_pred HHH
Confidence 764
No 209
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.42 E-value=0.00073 Score=69.23 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=59.8
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.+.+.|+|+|.+.............+..++.++.+++..++||++-|||. .+++.+++.. |++||.++++++..+.
T Consensus 253 ~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~-Ga~gVAvisaI~~a~d 330 (347)
T PRK02615 253 MAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQA-GAKRVAVVRAIMGAED 330 (347)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHc-CCcEEEEeHHHhCCCC
Confidence 4556678999998865443322111225678999999998899999999996 8899988875 9999999999987544
No 210
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.39 E-value=0.00076 Score=64.51 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=65.3
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+-+..+++.|+|+|.+-.-..........+.-|+.++.+++...+|+++-|||+ .+.+.++++ +|++||.+-|+++..
T Consensus 115 eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~-~~nv~~v~~-~Ga~gVAvvsai~~a 192 (211)
T COG0352 115 EEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGIN-LENVPEVLE-AGADGVAVVSAITSA 192 (211)
T ss_pred HHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHH-hCCCeEEehhHhhcC
Confidence 346667889999998855443332222235678999999998899999999996 799999888 499999999999987
Q ss_pred Cccchh
Q 013813 323 PALFAG 328 (436)
Q Consensus 323 P~lf~~ 328 (436)
++.-..
T Consensus 193 ~d~~~a 198 (211)
T COG0352 193 ADPAAA 198 (211)
T ss_pred CCHHHH
Confidence 776553
No 211
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.38 E-value=0.002 Score=62.07 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=58.5
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
..+.+.|+|+|.+..-....+ ....+..++.++.+++.+++||++-||| +.+++.++++. |++||.+-++++..++.
T Consensus 125 ~~A~~~gaDYv~~Gpv~t~tK-~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~-GA~giAvisai~~~~dp 201 (221)
T PRK06512 125 MEIGELRPDYLFFGKLGADNK-PEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAET-GAEFVALERAVFDAHDP 201 (221)
T ss_pred HHhhhcCCCEEEECCCCCCCC-CCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHh-CCCEEEEhHHhhCCCCH
Confidence 335679999998865431111 1122445778888888899999999999 68999999985 99999999999865553
No 212
>PRK08005 epimerase; Validated
Probab=97.35 E-value=0.0066 Score=58.08 Aligned_cols=148 Identities=11% Similarity=0.220 Sum_probs=94.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~ 238 (436)
+..+|.+.|...+.+-++.++. |+|.|-+-.- .|.| ..+.-+--++++++++.+++|+.|=+= .
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvM-------DG~F----VPN~tfG~~~i~~l~~~t~~~~DvHLM----v 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIE-------DTSF----INNITFGMKTIQAVAQQTRHPLSFHLM----V 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEecc-------CCCc----CCccccCHHHHHHHHhcCCCCeEEEec----c
Confidence 5678999999999999877765 8887655531 1111 112222245566777766777666532 2
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccc-------------c------------------------------CCCCCc---
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDE-------------K------------------------------DGKKFR--- 272 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~-------------~------------------------------~~~~g~--- 272 (436)
.+...+++.+.++|++.|++|.-.... + .++.|.
T Consensus 68 ~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~ 147 (210)
T PRK08005 68 SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFI 147 (210)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceec
Confidence 346668888889999999998542100 0 112221
Q ss_pred -cCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 273 -ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 273 -ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.-++-|+++++.. ...|-.-|||+ .+.+..+.+. |||.+++|+++..++.
T Consensus 148 ~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~a-Gad~~V~GsaiF~~~d 199 (210)
T PRK08005 148 AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAAA-GAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHHC-CCCEEEEChHhhCCCC
Confidence 1123444555443 34699999998 6888888875 9999999999876655
No 213
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.29 E-value=0.0081 Score=57.99 Aligned_cols=144 Identities=15% Similarity=0.299 Sum_probs=96.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEec
Q 013813 160 LFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIR 233 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiR 233 (436)
+..+|.+.|.-.+.+-.+.++. |+|.+-+-. | +|+- .+| -++++++++. +++|+.|=+=
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~-----tfg----------~~~i~~lr~~~~~~~~dvHLM 70 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL-----TIG----------PMVCQALRKHGITAPIDVHLM 70 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc-----ccC----------HHHHHHHHhhCCCCCEEEEec
Confidence 6789999999999999988865 788765553 3 3331 122 3467777776 5788776632
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccc-------------c------------------------------CCCC
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------K------------------------------DGKK 270 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-------------~------------------------------~~~~ 270 (436)
. .+...+++.+.++|++.|++|.-.... + .++.
T Consensus 71 v----~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~ 146 (223)
T PRK08745 71 V----EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFG 146 (223)
T ss_pred c----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCC
Confidence 2 356677888889999999998532100 0 1122
Q ss_pred Cc----cCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 271 FR----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 271 g~----ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|. ..++-|+++++. .++.|-.-|||+ .+.+..+.+. |||.+++|+++...+.
T Consensus 147 GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~a-GaDi~V~GSaiF~~~d 207 (223)
T PRK08745 147 GQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAA-GADTFVAGSAIFNAPD 207 (223)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHc-CCCEEEEChhhhCCCC
Confidence 21 123445555543 246789999998 6888888876 9999999999876554
No 214
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.29 E-value=0.0076 Score=58.07 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=46.5
Q ss_pred CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 271 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 271 g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
.+..-+.++++++.. ++|+.|||+|+++++++.+. |||.|+.|.-+..+|.-+.++
T Consensus 178 ~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~a-gAD~IVtG~iiee~~~~~~~~ 233 (240)
T COG1646 178 DPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEA-GADTIVTGTIIEEDPDKALET 233 (240)
T ss_pred CCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHc-CCCEEEECceeecCHHHHHHH
Confidence 355667777777654 99999999999999999986 999999999999999655443
No 215
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.28 E-value=0.011 Score=56.72 Aligned_cols=126 Identities=24% Similarity=0.194 Sum_probs=76.5
Q ss_pred cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 180 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 180 ~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
+.|+|+|-+.-. .++ ...+.+.+.++..++ .++.+.+- .+ +.+ -++.+.+.|.+.|-+-
T Consensus 83 ~~G~~~vii~~s-----er~--------~~~~e~~~~v~~a~~-~Gl~~I~~--v~-~~~----~~~~~~~~~~~~I~~~ 141 (223)
T PRK04302 83 DAGAVGTLINHS-----ERR--------LTLADIEAVVERAKK-LGLESVVC--VN-NPE----TSAAAAALGPDYVAVE 141 (223)
T ss_pred HcCCCEEEEecc-----ccc--------cCHHHHHHHHHHHHH-CCCeEEEE--cC-CHH----HHHHHhcCCCCEEEEe
Confidence 358999877632 001 112346667766655 36554443 22 122 2344667788888775
Q ss_pred cCcccccC-C-C-CCcc-CHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccch
Q 013813 260 GRTRDEKD-G-K-KFRA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 260 gRt~~~~~-~-~-~g~a-d~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~ 327 (436)
++..-+.. + . ..+. .-+.++.+++.. ++||++.|||++.+++..+++. |+|||.||++++.-+++-.
T Consensus 142 p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~-gadGvlVGsa~l~~~~~~~ 213 (223)
T PRK04302 142 PPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALEL-GADGVLLASGVVKAKDPEA 213 (223)
T ss_pred CccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcC-CCCEEEEehHHhCCcCHHH
Confidence 54211110 0 0 0011 123345566543 7999999999999999998875 9999999999997766543
No 216
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.27 E-value=0.0091 Score=64.17 Aligned_cols=69 Identities=23% Similarity=0.409 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+.++.+.++|++.|.|..-... ....|+.|+++++.. +++|++ |+|.|.++++.+++. |||+|.+|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~------s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~a-Gad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGN------SIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDA-GADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCC------chHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHc-CCCEEEEC
Confidence 4477889999999999988542111 022378999999874 677777 999999999999986 99999865
No 217
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.25 E-value=0.0014 Score=77.06 Aligned_cols=112 Identities=18% Similarity=0.187 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC------CCCCccCHHH-HHH
Q 013813 209 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNA-IKA 280 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~------~~~g~ad~~~-i~~ 280 (436)
.++-+.++|..++... +.||+||+-.+....+ ++.-+.++|+|.|+|.|.....-. ... ..-|++ +.+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~---ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~-GlP~e~gL~~ 1054 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGT---IATGVAKAYADLITISGYDGGTGASPLTSVKYA-GSPWELGLAE 1054 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCccH---HHhChhhcCCCEEEEeCCCCCcccccHHHHhhC-CccHHHHHHH
Confidence 4677888899998877 6899999765443332 344566799999999876542110 011 123443 333
Q ss_pred HHhh-----C--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 281 VKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 281 ik~~-----~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+.+. + .+.+++.||+.|..|+..++.. |||.|.+||++|----+
T Consensus 1055 ~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aL-GAd~~~~gt~~lialGC 1105 (1485)
T PRK11750 1055 THQALVANGLRHKIRLQVDGGLKTGLDVIKAAIL-GAESFGFGTGPMVALGC 1105 (1485)
T ss_pred HHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHc-CCcccccchHHHHHcCC
Confidence 3332 2 5899999999999999999986 99999999998765443
No 218
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.25 E-value=0.0058 Score=67.91 Aligned_cols=144 Identities=16% Similarity=0.191 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc------------C
Q 013813 168 DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------F 235 (436)
Q Consensus 168 d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl------------g 235 (436)
||.++++ ...+.|+++|-+.. ....||+++ +-++.+++.+++||-.|==+ |
T Consensus 71 d~~~~a~--~y~~~GA~aiSVlT-------e~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~G 133 (695)
T PRK13802 71 DPAALAR--EYEQGGASAISVLT-------EGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHG 133 (695)
T ss_pred CHHHHHH--HHHHcCCcEEEEec-------CcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcC
Confidence 4444333 23455899998873 233455554 23445566678899888311 1
Q ss_pred ----------CChhhHHHHHHHHHHcCccEE-EeccCcc--------------cccCCCCCccCHHHHHHHHhhC--CCc
Q 013813 236 ----------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RIP 288 (436)
Q Consensus 236 ----------~~~~d~~~~ak~le~aG~d~I-~VHgRt~--------------~~~~~~~g~ad~~~i~~ik~~~--~iP 288 (436)
.+.++..++.+.+.+.|.+.| -||.+.- ..+.-.+...|.+...++...+ ++.
T Consensus 134 ADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~ 213 (695)
T PRK13802 134 ADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVI 213 (695)
T ss_pred CCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcE
Confidence 122345556666666666655 4553221 0011122256777778887765 577
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
+|+-+||.+++|+..+.+. |+|+|.||.++|..|+.-..+
T Consensus 214 ~VsESGI~~~~d~~~l~~~-G~davLIGeslm~~~dp~~~~ 253 (695)
T PRK13802 214 KVAESGVFGAVEVEDYARA-GADAVLVGEGVATADDHELAV 253 (695)
T ss_pred EEEcCCCCCHHHHHHHHHC-CCCEEEECHHhhCCCCHHHHH
Confidence 8999999999999998875 999999999999999854433
No 219
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.24 E-value=0.0082 Score=61.88 Aligned_cols=124 Identities=12% Similarity=0.112 Sum_probs=95.6
Q ss_pred CHHHHHHHHH-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.+.++ .++.||+.|-|-.| +. ..++.-.+.++++++.+ ++++.|-..-+++.+++.++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~-----------~~---~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~ 208 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPW-----------GP---GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRL 208 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecC-----------Cc---hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHH
Confidence 7888887775 45679999998531 10 11455677888888877 47788887778999999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCC-HHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s-~eda~~~l~~tGaDgVmI 315 (436)
++.+++.++.++- +... ..|++..+++++.+++||.+...+.+ +++++++++...+|.|.+
T Consensus 209 ~~~l~~~~l~~iE-------eP~~---~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 209 GRALEELGFFWYE-------DPLR---EASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred HHHhhhcCCCeEe-------CCCC---chhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 9999999887762 1111 34678888999999999988888999 999999999877888876
No 220
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.006 Score=58.48 Aligned_cols=147 Identities=15% Similarity=0.311 Sum_probs=102.1
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 158 RPLFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
..+..+|...|...+.+-.+.+++ |+|.|-+.. | +|+ .-+=-.+++++++.+..|+.|=+
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPN---------------iTfGp~~v~~l~~~t~~p~DvHL 68 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPN---------------ITFGPPVVKALRKITDLPLDVHL 68 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC---------------cccCHHHHHHHhhcCCCceEEEE
Confidence 457899999999999999988864 898877764 2 444 22224567788887788888874
Q ss_pred ccCCChhhHHHHHHHHHHcCccEEEeccCcc-------------cc------------------------------cCCC
Q 013813 233 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-------------DE------------------------------KDGK 269 (436)
Q Consensus 233 Rlg~~~~d~~~~ak~le~aG~d~I~VHgRt~-------------~~------------------------------~~~~ 269 (436)
=+ ++...+++.+.++|++.|++|.=.. .- ..++
T Consensus 69 MV----~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGf 144 (220)
T COG0036 69 MV----ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGF 144 (220)
T ss_pred ec----CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCC
Confidence 32 4556788888999999999975210 00 0122
Q ss_pred CCc----cCHHHHHHHHhhC----CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 270 KFR----ADWNAIKAVKNAL----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 270 ~g~----ad~~~i~~ik~~~----~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
.|. .-++-++++++.. ++-|-.-|||+ .+.+..+.+. |||.+++|+++..+++.
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~A-Gad~~VaGSalF~~~d~ 206 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAA-GADVFVAGSALFGADDY 206 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHc-CCCEEEEEEEEeCCccH
Confidence 221 1234455555543 34578999997 5888888776 99999999998888883
No 221
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.22 E-value=0.0052 Score=63.02 Aligned_cols=135 Identities=16% Similarity=0.225 Sum_probs=100.4
Q ss_pred CCCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEec
Q 013813 157 DRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiR 233 (436)
..|+-..+...+++++.+.+ +.++.||..+-|-.|- .+++.-.+.++++++.++ +.+.+...
T Consensus 130 ~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN 194 (355)
T cd03321 130 PVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYN 194 (355)
T ss_pred CeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCC
Confidence 34555555556677766555 5567788877765431 234555677888888773 66777766
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.++++++++.+++.++.+|- ++. .+-||+..+++++.+++||.+...+.+++++.++++...+|.|
T Consensus 195 ~~~~~~~A~~~~~~l~~~~i~~iE------eP~----~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i 264 (355)
T cd03321 195 QSLTVPEAIERGQALDQEGLTWIE------EPT----LQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLV 264 (355)
T ss_pred CCcCHHHHHHHHHHHHcCCCCEEE------CCC----CCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeE
Confidence 678899999999999999988873 111 1347888999999999999998899999999999998778887
Q ss_pred eee
Q 013813 314 LSA 316 (436)
Q Consensus 314 mIG 316 (436)
.+-
T Consensus 265 ~~~ 267 (355)
T cd03321 265 MPD 267 (355)
T ss_pred ecC
Confidence 653
No 222
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.14 E-value=0.0099 Score=60.57 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=84.2
Q ss_pred HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEecc------------C----------
Q 013813 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV------------F---------- 235 (436)
Q Consensus 179 v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRl------------g---------- 235 (436)
.+.|+++|-+.. ....|||++ +-++.+++. +++||-+|==+ |
T Consensus 149 e~~GA~aISVLT-------d~~~F~Gs~--------e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaai 213 (338)
T PLN02460 149 EKGGAACLSVLT-------DEKYFQGSF--------ENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAV 213 (338)
T ss_pred HhCCCcEEEEec-------CcCcCCCCH--------HHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHh
Confidence 345788887762 223345443 224556665 77888888311 1
Q ss_pred CChhhHHHHHHHHHHcCccEE-EeccCcc-----c----------ccCCCCCccCHHHHHHHHh-----hC---CCcEEE
Q 013813 236 PNLQDTIKYAKMLEDAGCSLL-AVHGRTR-----D----------EKDGKKFRADWNAIKAVKN-----AL---RIPVLA 291 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I-~VHgRt~-----~----------~~~~~~g~ad~~~i~~ik~-----~~---~iPVia 291 (436)
.+.++..++.+.+.+.|.+.+ -||...- . .+.-.+...|++...++.. .+ ++.+++
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~Vs 293 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVG 293 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEE
Confidence 122344556666666666554 4553210 0 0011122467777777766 22 456899
Q ss_pred ccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 292 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 292 nGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
.+||.|++|+..+.+. |+|+|.||.+++..|+.-..++
T Consensus 294 ESGI~t~~Dv~~l~~~-GadAvLVGEsLMr~~dp~~~l~ 331 (338)
T PLN02460 294 ESGLFTPDDVAYVQNA-GVKAVLVGESLVKQDDPGKGIA 331 (338)
T ss_pred CCCCCCHHHHHHHHHC-CCCEEEECHHHhCCCCHHHHHH
Confidence 9999999999998875 9999999999999998655443
No 223
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.13 E-value=0.026 Score=55.11 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=104.2
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCccc-c--hhhccChhhh-------hhhhhccCCCCCEEEEe---cCCCHHHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPMLH-S--RIFTESEKYR-------NEEFATCKEDRPLFVQF---CANDPEILLNAA 176 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Temis-a--~~l~~~~~~~-------~~~~~~~~~e~plivQL---~g~d~e~~~~AA 176 (436)
|.++-|...-+++.+.|.+.+++---. + .++....... ...+...-...|+++=+ +|.+++...+.+
T Consensus 16 ~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~ 95 (240)
T cd06556 16 TLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELA 95 (240)
T ss_pred EecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHH
Confidence 778889999999999999987754321 1 1111111000 00111112235888765 345667777777
Q ss_pred H-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-----------------Ch
Q 013813 177 R-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-----------------NL 238 (436)
Q Consensus 177 ~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-----------------~~ 238 (436)
+ +++.|+++|.|--+. ...+.++++++. +++|...+-..+ ..
T Consensus 96 ~~l~~aGa~gv~iED~~-------------------~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~ 155 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE-------------------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAG 155 (240)
T ss_pred HHHHHcCCcEEEEcCcH-------------------HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHH
Confidence 5 556799999987431 233456666544 477776655411 23
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+++++-++.++++|+|.|.+++. +.+.++++.+.+++|+++||.=. +|||-++-
T Consensus 156 ~~ai~Ra~ay~~AGAd~i~~e~~------------~~e~~~~i~~~~~~P~~~~gag~------------~~dgq~lv 209 (240)
T cd06556 156 EQLIADALAYAPAGADLIVMECV------------PVELAKQITEALAIPLAGIGAGS------------GTDGQFLV 209 (240)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCC------------CHHHHHHHHHhCCCCEEEEecCc------------CCCceEEe
Confidence 46677788899999999998743 35778999999999999887432 78876554
No 224
>PRK06801 hypothetical protein; Provisional
Probab=97.12 E-value=0.017 Score=57.80 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=58.8
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC--CCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN--VRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG--I~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
+..+.+++.|+|+|.+.-.+..+++......+++.++++++.+++|++.-|| |. .+++.++++. |++.|-|++++.
T Consensus 160 ~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i~~-Gi~KINv~T~~~ 237 (286)
T PRK06801 160 LARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAIEL-GIHKINFYTGMS 237 (286)
T ss_pred HHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHHHc-CCcEEEehhHHH
Confidence 3334445799999988545544444333357999999999999999999999 87 5788888885 999999998764
Q ss_pred h
Q 013813 321 E 321 (436)
Q Consensus 321 ~ 321 (436)
.
T Consensus 238 ~ 238 (286)
T PRK06801 238 Q 238 (286)
T ss_pred H
Confidence 3
No 225
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.12 E-value=0.0015 Score=60.49 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=53.5
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.+.|+|++.+..-..........+..|+.+.++++...+||++-||| +++++.++.+ .|++||.+-+++
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~-~Ga~gvAvi~aI 180 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELRE-AGADGVAVISAI 180 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHH-TT-SEEEESHHH
T ss_pred HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEeeC
Confidence 666778999999987653332211123567899999999999999999999 5888998887 499999988764
No 226
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.06 E-value=0.016 Score=58.56 Aligned_cols=137 Identities=22% Similarity=0.218 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHcC--CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHH
Q 013813 167 NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 167 ~d~e~~~~AA~~v~~--g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ 244 (436)
.+.++....|++..+ +.+.|-|-.-- + --.++.|+....+-.+.+.+. ++-|.+=+ . ++ ...
T Consensus 147 ~ta~eAv~~a~lare~~~~~~iKlEvi~-------e--~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc--~---~d-~~~ 210 (326)
T PRK11840 147 YTAEEAVRTLRLAREAGGWDLVKLEVLG-------D--AKTLYPDMVETLKATEILVKE-GFQVMVYC--S---DD-PIA 210 (326)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEcC-------C--CCCcccCHHHHHHHHHHHHHC-CCEEEEEe--C---CC-HHH
Confidence 568888888887754 45777766311 1 123455555444444443211 33332221 1 12 346
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++.+++.|+-.|---+-... .+.|-.+-+.++.+.+..++||+..+||.+++|+..+++. |||||.+.+|...-+
T Consensus 211 a~~l~~~g~~avmPl~~pIG---sg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Amel-GadgVL~nSaIa~a~ 285 (326)
T PRK11840 211 AKRLEDAGAVAVMPLGAPIG---SGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMEL-GCDGVLMNTAIAEAK 285 (326)
T ss_pred HHHHHhcCCEEEeecccccc---CCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEcceeccCC
Confidence 88899999943322111111 1222347788999999999999999999999999999997 999999999886433
No 227
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0056 Score=60.00 Aligned_cols=112 Identities=14% Similarity=0.255 Sum_probs=77.1
Q ss_pred HHHHhcccCccEEEEecc------------C----------CChhhHHHHHHHHHHcCccEE-EeccCcc----------
Q 013813 217 VEKLALNLNVPVSCKIRV------------F----------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR---------- 263 (436)
Q Consensus 217 v~av~~~~~iPVsVKiRl------------g----------~~~~d~~~~ak~le~aG~d~I-~VHgRt~---------- 263 (436)
++.++..+.+||-+|==+ | .+.++..+++..+.+.|.+.+ -||...-
T Consensus 99 L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~ 178 (254)
T COG0134 99 LRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAK 178 (254)
T ss_pred HHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCC
Confidence 456677788999998311 2 122345566666677777665 3554221
Q ss_pred ----cccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 264 ----DEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 264 ----~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
..+.-.+...|++...++.... +..+|.-+||.+++|+.++... |+|++.||.++|.++.....+
T Consensus 179 iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~-ga~a~LVG~slM~~~~~~~a~ 249 (254)
T COG0134 179 IIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKA-GADAFLVGEALMRADDPEEAL 249 (254)
T ss_pred EEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHc-CCCEEEecHHHhcCCCHHHHH
Confidence 0001112246788888888765 4789999999999999998885 999999999999999985443
No 228
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.01 E-value=0.0042 Score=59.04 Aligned_cols=142 Identities=15% Similarity=0.355 Sum_probs=87.7
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCcEEEEe--cC--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 160 LFVQFCANDPEILLNAARRVEP-YCDYVDIN--LG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~-g~D~IdLN--~G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+..+|+..|...+.+.++.+++ |+|.+-+- -| +|+- .+ --++++++++.+++|+.|=+=.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~-----~~----------g~~~i~~i~~~~~~~~DvHLMv 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL-----TF----------GPDIIKAIRKITDLPLDVHLMV 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB------B-----------HHHHHHHHTTSSSEEEEEEES
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc-----cC----------CHHHHHHHhhcCCCcEEEEeee
Confidence 5678889999999999988764 78865443 33 3431 12 2455667777788888877522
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccc-------------------------------------------cCCCCC
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKKF 271 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~-------------------------------------------~~~~~g 271 (436)
.++..+++.+.++|++.|++|.-.... ..++.|
T Consensus 67 ----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 67 ----ENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp ----SSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSS
T ss_pred ----ccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCc
Confidence 233456667777888888886432100 012222
Q ss_pred cc----CHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 272 RA----DWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 272 ~a----d~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
.. -++-|+++++. .++.|..-|||+. +.+..+.+. |||.+++|+++..+
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~a-Gad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEA-GADIFVAGSAIFKA 200 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHH-T--EEEESHHHHTS
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHc-CCCEEEECHHHhCC
Confidence 21 24445555443 3588999999985 688888876 99999999988653
No 229
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.92 E-value=0.019 Score=55.00 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=95.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCch-----hhhcC-------cccccccCChHHHHHHHHHHhc-
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR-----IARRG-------NYGAFLMDNLPLVKSLVEKLAL- 222 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~-----~~~~~-------~~Gs~Ll~~p~~v~eIv~av~~- 222 (436)
..+++.=|-+.++++....++.+ +.|+..||+-+-.|.. ..++. .-|+.-.-+++.+++.+++=.+
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 46777778999999999999765 5589999998866551 11111 1244444566666554443111
Q ss_pred ---------------ccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-C
Q 013813 223 ---------------NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-R 286 (436)
Q Consensus 223 ---------------~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~ 286 (436)
..++|+.-.+ ....+ +..+.++|+|+|-+.... ..-.++++.++... +
T Consensus 92 ivsP~~~~~v~~~~~~~~i~~iPG~------~T~~E-~~~A~~~Gad~vklFPa~---------~~G~~~ik~l~~~~p~ 155 (213)
T PRK06552 92 IVSPSFNRETAKICNLYQIPYLPGC------MTVTE-IVTALEAGSEIVKLFPGS---------TLGPSFIKAIKGPLPQ 155 (213)
T ss_pred EECCCCCHHHHHHHHHcCCCEECCc------CCHHH-HHHHHHcCCCEEEECCcc---------cCCHHHHHHHhhhCCC
Confidence 1133332221 11222 233467999999885421 12247788888776 4
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
+|+++.|||+ .+.+.++++. |+++|.+|..++
T Consensus 156 ip~~atGGI~-~~N~~~~l~a-Ga~~vavgs~l~ 187 (213)
T PRK06552 156 VNVMVTGGVN-LDNVKDWFAA-GADAVGIGGELN 187 (213)
T ss_pred CEEEEECCCC-HHHHHHHHHC-CCcEEEEchHHh
Confidence 9999999998 7999999986 999999998885
No 230
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.90 E-value=0.03 Score=60.37 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+..+-++.|.++|+|.|.+-.-. +. ...-|+.|++|++...-..+..|+|.|.++++.+++. |||+|.+|
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~-----g~-~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a-GaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQ-----GD-SIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA-GVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCC-----CC-cHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc-CcCEEEEC
Confidence 345677888999999999885421 11 1234799999998753334556899999999999986 99999775
No 231
>PRK06852 aldolase; Validated
Probab=96.90 E-value=0.081 Score=53.36 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcccCccEEEEe-ccCC------ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh
Q 013813 212 LVKSLVEKLALNLNVPVSCKI-RVFP------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 284 (436)
Q Consensus 212 ~v~eIv~av~~~~~iPVsVKi-Rlg~------~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~ 284 (436)
.+.+++++. ...++|+.+=+ -.|. +.+.+...++...+.|+|.|-+---+... .-+-+.++++.+.
T Consensus 155 ~l~~v~~ea-~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~------~g~~e~f~~vv~~ 227 (304)
T PRK06852 155 EAAQIIYEA-HKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEG------ANPAELFKEAVLA 227 (304)
T ss_pred HHHHHHHHH-HHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCC------CCCHHHHHHHHHh
Confidence 344555554 34589987622 1132 22334556788899999999664322110 1234677888888
Q ss_pred C-CCcEEEccCCC-CHHHHHH----HHHhcCcceeeeehHHhhCCc
Q 013813 285 L-RIPVLANGNVR-HMEDVQK----CLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 285 ~-~iPVianGGI~-s~eda~~----~l~~tGaDgVmIGRgal~nP~ 324 (436)
. .+||+..||=+ +.+++.+ .++..|+.||.+||=....|.
T Consensus 228 ~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 228 AGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 8 89999888866 4444444 444359999999998776654
No 232
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.88 E-value=0.015 Score=59.13 Aligned_cols=105 Identities=19% Similarity=0.259 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCc----cCHHHHHHHHhhCC
Q 013813 211 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNALR 286 (436)
Q Consensus 211 ~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~----ad~~~i~~ik~~~~ 286 (436)
+...+-+...++..+.||.+-+ .+.+.++..++++.++++|+|+|.+|--......+..+. .-.+.++.+++.++
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si-~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~ 163 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASL-NGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT 163 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEe-CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC
Confidence 3333444444445578999887 355667888999999999999999875431111111111 11467788888888
Q ss_pred CcEE--EccCCCCHHHHHHHHHhcCcceeeee
Q 013813 287 IPVL--ANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 287 iPVi--anGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+||+ ..+++.+..++.+.+++.|+|+|.+.
T Consensus 164 iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 164 IPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 9987 45666677777777777899998764
No 233
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.85 E-value=0.029 Score=54.45 Aligned_cols=145 Identities=21% Similarity=0.307 Sum_probs=92.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ 239 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~ 239 (436)
+..+|...|.-.+.+-.+.++.|+|.|-+-.- .| .+..+.-+--++++++++.+++|+.|=+=. .
T Consensus 5 I~pSil~ad~~~l~~el~~l~~g~d~lH~DiM-------DG----~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv----~ 69 (229)
T PRK09722 5 ISPSLMCMDLLKFKEQIEFLNSKADYFHIDIM-------DG----HFVPNLTLSPFFVSQVKKLASKPLDVHLMV----T 69 (229)
T ss_pred EEeehhhcCHHHHHHHHHHHHhCCCEEEEecc-------cC----ccCCCcccCHHHHHHHHhcCCCCeEEEEEe----c
Confidence 67899999999999999888778887655531 01 111122222456677777677776665322 3
Q ss_pred hHHHHHHHHHHcCccEEEeccCcc--cc------------c------------------------------CCCCCcc--
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTR--DE------------K------------------------------DGKKFRA-- 273 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~--~~------------~------------------------------~~~~g~a-- 273 (436)
++..+++.+.++|++.|++|.-.. .. + .++.|..
T Consensus 70 ~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi 149 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFI 149 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhcc
Confidence 566778888889999999986421 00 0 1121211
Q ss_pred --CHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH-Hhh
Q 013813 274 --DWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES-LLE 321 (436)
Q Consensus 274 --d~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg-al~ 321 (436)
-++-|+++++. .++.|-.-|||+ .+.+.++.+. |||.+++|++ +..
T Consensus 150 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~a-Gad~~V~Gss~iF~ 203 (229)
T PRK09722 150 PEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEA-GADVFIVGTSGLFN 203 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHc-CCCEEEEChHHHcC
Confidence 12334444442 246689999998 6788888876 9999999976 443
No 234
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.84 E-value=0.02 Score=56.51 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++.+ +.|+++|-+|. ..|-+..-..+.-.++++.+++.+ ++||.+.+.. .+..+++++
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~G----------stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~ 84 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLG----------TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAIEL 84 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHHHH
Confidence 667777777654 56999998883 345555556666677777766655 5899988543 355789999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE------EccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL------ANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi------anGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.++++|+|++.+..-.... .+...-+++++.|.+.+++||+ ..|---+++.+.++.+...+.|+=.
T Consensus 85 a~~a~~~Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~ 158 (281)
T cd00408 85 ARHAEEAGADGVLVVPPYYNK---PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKD 158 (281)
T ss_pred HHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEe
Confidence 999999999999986543221 1111235667788888889987 3466777888888775334444433
No 235
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.82 E-value=0.041 Score=51.57 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=90.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchh-----h------hcCcccccccCChHHHHHHHHHHhcc-
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRI-----A------RRGNYGAFLMDNLPLVKSLVEKLALN- 223 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~-----~------~~~~~Gs~Ll~~p~~v~eIv~av~~~- 223 (436)
..+++.=+.+.++++..+.++.+ +.|++.|+|-+--+... . ...+.|. ++.. +.+...++.=.+.
T Consensus 11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gt-vl~~-d~~~~A~~~gAdgv 88 (187)
T PRK07455 11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGT-ILTL-EDLEEAIAAGAQFC 88 (187)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEE-EEcH-HHHHHHHHcCCCEE
Confidence 35677778899999999988654 56899999975322210 0 0111222 2222 4444443321111
Q ss_pred ---------------cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CC
Q 013813 224 ---------------LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 287 (436)
Q Consensus 224 ---------------~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~i 287 (436)
.+++.. +| ..+..+ +..+.+.|+|+|-+..- . . ..-.++++.++..+ ++
T Consensus 89 ~~p~~~~~~~~~~~~~~~~~i----~G--~~t~~e-~~~A~~~Gadyv~~Fpt--~---~---~~G~~~l~~~~~~~~~i 153 (187)
T PRK07455 89 FTPHVDPELIEAAVAQDIPII----PG--ALTPTE-IVTAWQAGASCVKVFPV--Q---A---VGGADYIKSLQGPLGHI 153 (187)
T ss_pred ECCCCCHHHHHHHHHcCCCEE----cC--cCCHHH-HHHHHHCCCCEEEECcC--C---c---ccCHHHHHHHHhhCCCC
Confidence 112111 22 122223 34456789999987431 1 0 12357799999887 69
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
||++.||| +.+++.++++. |+++|.++++++.
T Consensus 154 pvvaiGGI-~~~n~~~~l~a-Ga~~vav~s~i~~ 185 (187)
T PRK07455 154 PLIPTGGV-TLENAQAFIQA-GAIAVGLSGQLFP 185 (187)
T ss_pred cEEEeCCC-CHHHHHHHHHC-CCeEEEEehhccc
Confidence 99999999 57999999995 9999999988754
No 236
>PRK08999 hypothetical protein; Provisional
Probab=96.81 E-value=0.0055 Score=61.45 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=55.4
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.+.|+|+|.+..-..........+..++.++++++..++||++-||| +.+++.++++. |++||.+-+++
T Consensus 239 ~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~-g~~gva~i~~~ 311 (312)
T PRK08999 239 LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAREH-GAQGIAGIRGL 311 (312)
T ss_pred HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHh-CCCEEEEEEEe
Confidence 455667899999886543322111122456888999999899999999999 79999998875 99999987764
No 237
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.81 E-value=0.024 Score=60.23 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=47.2
Q ss_pred ccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 272 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 272 ~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
..|.+...++...+ ++.+|+-+||.|++|+..+ .. |+|+|.||.++|.+|+.-..++
T Consensus 194 ~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~-~~davLiG~~lm~~~d~~~~~~ 252 (454)
T PRK09427 194 SIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SP-FANGFLIGSSLMAEDDLELAVR 252 (454)
T ss_pred eECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-Hh-cCCEEEECHHHcCCCCHHHHHH
Confidence 46777777777765 6778999999999999996 44 7999999999999999765554
No 238
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.80 E-value=0.02 Score=56.11 Aligned_cols=187 Identities=17% Similarity=0.240 Sum_probs=107.1
Q ss_pred CCcEEEccCCCCCcHHHHHHH---HHhCCCeEEeCcccch----hhcc-Chhhhhhhhh-ccCCCCCEEEEecCCCHHHH
Q 013813 102 RPKLIVAPMVDNSELPFRMLC---RRYGAEAAYTPMLHSR----IFTE-SEKYRNEEFA-TCKEDRPLFVQFCANDPEIL 172 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~---~~~Ga~l~~Temisa~----~l~~-~~~~~~~~~~-~~~~e~plivQL~g~d~e~~ 172 (436)
...++.-|=+==|.-.....+ ++.|+.+++-.....| .|.. ..+......+ ....+-|++..++. ++++
T Consensus 15 ~~~~iaGPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d--~~~v 92 (250)
T PRK13397 15 KNNFIVGPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMS--ERQL 92 (250)
T ss_pred CCcEEeccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCC--HHHH
Confidence 344555555555554444443 4557665554433222 2211 1111111111 12345667666543 3333
Q ss_pred HHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC
Q 013813 173 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 252 (436)
Q Consensus 173 ~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG 252 (436)
..+ .+++|.+-| ||..+++.+++.++- .+++||.+|.-...+.++....++.+.+.|
T Consensus 93 ~~~----~e~vdilqI--------------gs~~~~n~~LL~~va-----~tgkPVilk~G~~~t~~e~~~A~e~i~~~G 149 (250)
T PRK13397 93 EEA----YDYLDVIQV--------------GARNMQNFEFLKTLS-----HIDKPILFKRGLMATIEEYLGALSYLQDTG 149 (250)
T ss_pred HHH----HhcCCEEEE--------------CcccccCHHHHHHHH-----ccCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 222 224666554 677888877665543 348999999655677888888899999999
Q ss_pred ccEEEe-c-cCcccccCCC-CCccCHHHHHHHHhhCCCcEEEc----cCCCC--HHHHHHHHHhcCcceeeee
Q 013813 253 CSLLAV-H-GRTRDEKDGK-KFRADWNAIKAVKNALRIPVLAN----GNVRH--MEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 253 ~d~I~V-H-gRt~~~~~~~-~g~ad~~~i~~ik~~~~iPVian----GGI~s--~eda~~~l~~tGaDgVmIG 316 (436)
...|++ | |- ...... ....|+..+..+++..++||+.. +|.+. ..-+...+. .||||+||=
T Consensus 150 n~~i~L~eRg~--~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA-~GAdGl~IE 219 (250)
T PRK13397 150 KSNIILCERGV--RGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKA-VGANGIMME 219 (250)
T ss_pred CCeEEEEcccc--CCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHH-hCCCEEEEE
Confidence 965554 5 32 211111 11468888999998889999885 55433 233445555 499999976
No 239
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=96.79 E-value=0.021 Score=56.42 Aligned_cols=110 Identities=17% Similarity=0.280 Sum_probs=75.3
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-ccCcccccCCCCCccCHHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKA 280 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-HgRt~~~~~~~~g~ad~~~i~~ 280 (436)
-||..+.+.+++..+ . .+++||.+|.-...+.++....++.+.+.|...|++ |..+..-........||..+..
T Consensus 114 I~s~~~~n~~LL~~~----a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~ 188 (260)
T TIGR01361 114 IGARNMQNFELLKEV----G-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPV 188 (260)
T ss_pred ECcccccCHHHHHHH----h-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHH
Confidence 367788888865554 2 458999999655557888888899999999966655 6323221011122579999999
Q ss_pred HHhhCCCcEEE----ccCCCC--HHHHHHHHHhcCcceeeeeh
Q 013813 281 VKNALRIPVLA----NGNVRH--MEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 281 ik~~~~iPVia----nGGI~s--~eda~~~l~~tGaDgVmIGR 317 (436)
+++..++||++ .+|.++ ...+...+. .||||+||=+
T Consensus 189 lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva-~Ga~gl~iE~ 230 (260)
T TIGR01361 189 LKKETHLPIIVDPSHAAGRRDLVIPLAKAAIA-AGADGLMIEV 230 (260)
T ss_pred HHHhhCCCEEEcCCCCCCccchHHHHHHHHHH-cCCCEEEEEe
Confidence 99888999999 334222 344445555 4999998764
No 240
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.74 E-value=0.053 Score=54.49 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=56.7
Q ss_pred HHHHHHcCccEEEe-----ccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccC--CCCHHHHHHHHHhcCcceeeee
Q 013813 245 AKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN--VRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~V-----HgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGG--I~s~eda~~~l~~tGaDgVmIG 316 (436)
|+.+.+.|+|+|.+ ||..... +...+++.++++++.+ ++|+++-|| |. .+++.++++. |++.|-|+
T Consensus 159 a~~f~~tgvD~LAv~iG~vHG~y~t~----~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~e~~~~~i~~-Gi~KiNv~ 232 (293)
T PRK07315 159 AKAMVETGIDFLAAGIGNIHGPYPEN----WEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-DDQIQEAIKL-GVAKVNVN 232 (293)
T ss_pred HHHHHHcCCCEEeeccccccccCCCC----CCcCCHHHHHHHHHhccCCCEEEECCCCCC-HHHHHHHHHc-CCCEEEEc
Confidence 45555889999966 5554321 1258899999999999 599999999 86 5889999985 99999999
Q ss_pred hHHhh
Q 013813 317 ESLLE 321 (436)
Q Consensus 317 Rgal~ 321 (436)
+.+..
T Consensus 233 T~i~~ 237 (293)
T PRK07315 233 TECQI 237 (293)
T ss_pred cHHHH
Confidence 99876
No 241
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.73 E-value=0.011 Score=56.40 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=59.8
Q ss_pred HHHHHHcCccEEEeccCccccc-CCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+..+++.|+|++.+..-..... .+...+..|+.++++.+. .++||++-|||. .+++.++++. |++||.+-++++..
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~-Ga~GiAvisai~~~ 192 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLAT-GVGSIAVVSAITQA 192 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHHc-CCCEEEEhhHhhCC
Confidence 4556688999998865433221 112224568888888776 589999999998 7899998875 99999999999876
Q ss_pred Cccch
Q 013813 323 PALFA 327 (436)
Q Consensus 323 P~lf~ 327 (436)
++.-.
T Consensus 193 ~d~~~ 197 (211)
T PRK03512 193 ADWRA 197 (211)
T ss_pred CCHHH
Confidence 65433
No 242
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.72 E-value=0.19 Score=51.20 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=99.2
Q ss_pred HHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc-ccc--hhhccChhhh-h------hhhhccCCCCCEEE-Ee-
Q 013813 97 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM-LHS--RIFTESEKYR-N------EEFATCKEDRPLFV-QF- 164 (436)
Q Consensus 97 ~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem-isa--~~l~~~~~~~-~------~~~~~~~~e~pliv-QL- 164 (436)
++.-|+ ||+ |...-|.++-+++.+.|++++.+.= +.. -++.....-. . ..+. .-...|++| -+
T Consensus 30 ~k~~g~-kiv---mlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~-Rga~~a~vVaDmP 104 (332)
T PLN02424 30 KYRRGE-PIT---MVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVA-RGANRPLLVGDLP 104 (332)
T ss_pred HHhCCC-cEE---EEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHh-ccCCCCEEEeCCC
Confidence 444443 555 7888999999999999999866442 111 1111110000 0 0011 123566665 22
Q ss_pred ---cCCCHHHHHHHH-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-----
Q 013813 165 ---CANDPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 234 (436)
Q Consensus 165 ---~g~d~e~~~~AA-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl----- 234 (436)
++.++++..+.| +++. .|+++|.|--|. ....++|+.+. ..++||.-=|-+
T Consensus 105 fgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~ 165 (332)
T PLN02424 105 FGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAI 165 (332)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceee
Confidence 234677777666 4545 689999998442 22345666665 558898833322
Q ss_pred ---------CCCh---hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc
Q 013813 235 ---------FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 293 (436)
Q Consensus 235 ---------g~~~---~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG 293 (436)
|.+. ..+++-|+.++++|++.|.+-+.. -+..++|.+.++||+|+.|
T Consensus 166 ~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp------------~~la~~It~~l~IPtIGIG 224 (332)
T PLN02424 166 SVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVP------------APVAAAITSALQIPTIGIG 224 (332)
T ss_pred hhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCc------------HHHHHHHHHhCCCCEEeec
Confidence 1222 245677889999999999886543 2467899999999999887
No 243
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.72 E-value=0.038 Score=56.64 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=102.9
Q ss_pred CCCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 157 DRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
..|+...+.+.+++++.+-+ +.++.||..+-+..|-+.... + --.+++.-.+.|+++++.+ ++.+.|-..
T Consensus 112 ~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~--~-----~~~~~~~D~~~i~avr~~~g~~~~l~vDaN 184 (352)
T cd03325 112 RVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWI--D-----TSKKVDAAVERVAALREAVGPDIDIGVDFH 184 (352)
T ss_pred eeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccC--C-----CHHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 34555555666888776555 455679999999876321100 0 0013455677788888776 466777766
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.+++.++++.+++.|+.+| ++... .-||+..+++++...+||.+.=.+.+++++..+++...+|.|
T Consensus 185 ~~~~~~~A~~~~~~l~~~~i~~i-------EeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v 254 (352)
T cd03325 185 GRVSKPMAKDLAKELEPYRLLFI-------EEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDII 254 (352)
T ss_pred CCCCHHHHHHHHHhccccCCcEE-------ECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEE
Confidence 67888999999999999998887 22111 347888999999999999888789999999999988778887
Q ss_pred eee
Q 013813 314 LSA 316 (436)
Q Consensus 314 mIG 316 (436)
.+-
T Consensus 255 ~~d 257 (352)
T cd03325 255 QPD 257 (352)
T ss_pred ecC
Confidence 654
No 244
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.71 E-value=0.043 Score=57.72 Aligned_cols=124 Identities=13% Similarity=0.073 Sum_probs=93.7
Q ss_pred CCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCCChhhHH
Q 013813 166 ANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~ 242 (436)
+.+++++.+-+ +.++.||..+-+..| .+++.-.+.++++++.++ +.+.|-...+|+.++++
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~ 257 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAI 257 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 45777776555 456779999988754 134555677888888773 56666666678999999
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++++.+++.|+.+| ++... +-|++..+++++.+ ++||.+.=.+.+..++.++++...+|.+++
T Consensus 258 ~~~~~L~~~~l~~i-------EEP~~---~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~ 323 (415)
T cd03324 258 EWVKQLAEFKPWWI-------EEPTS---PDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQI 323 (415)
T ss_pred HHHHHhhccCCCEE-------ECCCC---CCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEe
Confidence 99999999998876 22111 34678888999887 699988778999999999998867887754
No 245
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.71 E-value=0.0065 Score=57.82 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
..+..++|+.++++|+++|++..-... . .-..+.++.+++.+++||+.-|+|.+.++++.+++. |||+|.++-
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~----~--~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~-Gad~v~l~~ 102 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKY----F--QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAA-GADAVLLIV 102 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCccc----c--CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHc-CCCEEEEee
Confidence 457899999999999999987643322 1 123577888888889999999999999999998885 999999987
Q ss_pred HHhh
Q 013813 318 SLLE 321 (436)
Q Consensus 318 gal~ 321 (436)
..+.
T Consensus 103 ~~~~ 106 (217)
T cd00331 103 AALD 106 (217)
T ss_pred ccCC
Confidence 6654
No 246
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0041 Score=62.71 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
...++.+.+++.|+..|.+....+++... .+|+++++.++..++||||++.|-.+++..++.++.|.||+..
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DGsn~---GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaL 513 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDGSNK---GYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAAL 513 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCCCCC---CcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhh
Confidence 56789999999999999998877765322 5899999999999999999999999999999999999999753
No 247
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.68 E-value=0.063 Score=53.74 Aligned_cols=151 Identities=16% Similarity=0.160 Sum_probs=91.6
Q ss_pred CCCCEEEEe-cCCCHHHHHHHHHHH-cCCCcEEEEecCC-CchhhhcCcccc---cccCChHHHHHHHHHHhcc-cCccE
Q 013813 156 EDRPLFVQF-CANDPEILLNAARRV-EPYCDYVDINLGC-PQRIARRGNYGA---FLMDNLPLVKSLVEKLALN-LNVPV 228 (436)
Q Consensus 156 ~e~plivQL-~g~d~e~~~~AA~~v-~~g~D~IdLN~GC-P~~~~~~~~~Gs---~Ll~~p~~v~eIv~av~~~-~~iPV 228 (436)
...|+++-+ .|.++..+.+.++.+ +.|+.+|.|--.+ |. +.+.+|+ ..+-..+...+.|++++++ .+.++
T Consensus 77 ~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk---~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~ 153 (285)
T TIGR02320 77 TTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLK---KNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDF 153 (285)
T ss_pred cCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCc---cccccCCCCcccccCHHHHHHHHHHHHHhccCCCe
Confidence 467877654 235888888888655 5699999995332 21 1122232 2344556666666666654 34444
Q ss_pred EEEecc-----CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-----CCcEEEccCCCCH
Q 013813 229 SCKIRV-----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHM 298 (436)
Q Consensus 229 sVKiRl-----g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-----~iPVianGGI~s~ 298 (436)
.|=-|. +...+++++-++...++|+|.|-+++.. .+.+.+.++.+.+ ++|++.+.+-...
T Consensus 154 ~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~----------~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~ 223 (285)
T TIGR02320 154 MIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK----------KDPDEILEFARRFRNHYPRTPLVIVPTSYYT 223 (285)
T ss_pred EEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC----------CCHHHHHHHHHHhhhhCCCCCEEEecCCCCC
Confidence 444442 2357889999999999999999998421 2234455555544 5688876531111
Q ss_pred HHHHHHHHhcCcceeeeehHHh
Q 013813 299 EDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 299 eda~~~l~~tGaDgVmIGRgal 320 (436)
-.+.++-+ -|+..|..|-.++
T Consensus 224 ~~~~eL~~-lG~~~v~~~~~~~ 244 (285)
T TIGR02320 224 TPTDEFRD-AGISVVIYANHLL 244 (285)
T ss_pred CCHHHHHH-cCCCEEEEhHHHH
Confidence 13444444 4999999885543
No 248
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.65 E-value=0.09 Score=52.64 Aligned_cols=161 Identities=15% Similarity=0.208 Sum_probs=93.4
Q ss_pred CCCEEEEecCC------CHHHHHHHHHHHcC--CC-cEEEEecC-CCc----hhhhcCccccccc--------CChHHHH
Q 013813 157 DRPLFVQFCAN------DPEILLNAARRVEP--YC-DYVDINLG-CPQ----RIARRGNYGAFLM--------DNLPLVK 214 (436)
Q Consensus 157 e~plivQL~g~------d~e~~~~AA~~v~~--g~-D~IdLN~G-CP~----~~~~~~~~Gs~Ll--------~~p~~v~ 214 (436)
..|+|+|+.-+ +.+.+...++.+.. .+ --|-||+. |.. ....+.||.|-+. .+-+..+
T Consensus 42 ~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Tr 121 (285)
T PRK07709 42 KSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTK 121 (285)
T ss_pred CCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Confidence 57788887542 23334434433322 11 13556652 332 1223344544333 3455666
Q ss_pred HHHHHHhcccCccEEEEec-cC-C-C--------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh
Q 013813 215 SLVEKLALNLNVPVSCKIR-VF-P-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 283 (436)
Q Consensus 215 eIv~av~~~~~iPVsVKiR-lg-~-~--------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~ 283 (436)
++++..+ ..+++|-.=+- +| . + ..++.+..+.+++.|+|.+.|.-.|..+.+......||+.+++|++
T Consensus 122 evv~~Ah-~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~ 200 (285)
T PRK07709 122 KVVEYAH-ARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRD 200 (285)
T ss_pred HHHHHHH-HcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHH
Confidence 6666654 33666655432 11 0 1 2244454555568899999774444444333333589999999999
Q ss_pred hCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 284 ALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 284 ~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
.+++|++.-||=..+ ++++++++. |+.-|=|++.+
T Consensus 201 ~~~iPLVLHGgSG~~~e~~~~ai~~-Gi~KiNi~T~l 236 (285)
T PRK07709 201 FTGVPLVLHGGTGIPTADIEKAISL-GTSKINVNTEN 236 (285)
T ss_pred HHCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEeChHH
Confidence 999999999986665 667777775 88888777654
No 249
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0086 Score=63.53 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc---c---CCCCCccCHHH-HHH
Q 013813 209 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---K---DGKKFRADWNA-IKA 280 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~---~---~~~~g~ad~~~-i~~ 280 (436)
.++-+.++|..+++.. ..+|+||+-.+...+.. +--+.++|+|.|+|.|-.... . ....| .-|++ +.+
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~i---aagvakA~AD~I~IdG~~GGTGAsP~~~~~~~G-iP~e~glae 361 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTI---AAGVAKAGADVITIDGADGGTGASPLTSIDHAG-IPWELGLAE 361 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccchHHH---HhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCC-chHHHHHHH
Confidence 4677889999998876 46799997654443332 222678999999997654321 0 01111 22433 222
Q ss_pred HHhhC-------CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 281 VKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 281 ik~~~-------~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
+-+.+ .+-|++.||+.|..|+..++.. |||.|-+|+++|--
T Consensus 362 ~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aL-GAd~v~~gTa~lia 409 (485)
T COG0069 362 THQTLVLNGLRDKVKLIADGGLRTGADVAKAAAL-GADAVGFGTAALVA 409 (485)
T ss_pred HHHHHHHcCCcceeEEEecCCccCHHHHHHHHHh-CcchhhhchHHHHH
Confidence 22211 4789999999999999999986 99999999997643
No 250
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=96.64 E-value=0.083 Score=52.33 Aligned_cols=150 Identities=23% Similarity=0.284 Sum_probs=94.8
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCc-ccc--hhhccChh----hh---hhhhhccCCCCC-EEEEec-C---CCHHH-HH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPM-LHS--RIFTESEK----YR---NEEFATCKEDRP-LFVQFC-A---NDPEI-LL 173 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Tem-isa--~~l~~~~~----~~---~~~~~~~~~e~p-livQL~-g---~d~e~-~~ 173 (436)
|.++-|...-+++.+.|.++++|.- ++. .++..... .. ...+.. -.+.| +++-+- | .++++ +.
T Consensus 19 ~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r-~~~~p~vvaD~pfg~y~~~~~~av~ 97 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVAR-GAPRALVVADMPFGSYQASPEQALR 97 (264)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHh-cCCCCcEEEeCCCCCccCCHHHHHH
Confidence 6788899999999999999988762 111 11111100 00 011111 22344 666562 3 35565 55
Q ss_pred HHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE---------------EEeccCCC
Q 013813 174 NAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS---------------CKIRVFPN 237 (436)
Q Consensus 174 ~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs---------------VKiRlg~~ 237 (436)
.+.+.++ .|+++|.|--| +...+.|+++++. ++||. .|+ .|.+
T Consensus 98 ~a~r~~~~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i-~grt 156 (264)
T PRK00311 98 NAGRLMKEAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKV-QGRD 156 (264)
T ss_pred HHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeee-ecCC
Confidence 5667777 69999998743 2455666666533 78875 233 2333
Q ss_pred ---hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc
Q 013813 238 ---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 293 (436)
Q Consensus 238 ---~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG 293 (436)
.+++++-++.++++|++.|.+-+-. -+.+++|.+.+++|+|+.|
T Consensus 157 ~~~a~~~i~ra~a~~eAGA~~i~lE~v~------------~~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 157 EEAAEKLLEDAKALEEAGAFALVLECVP------------AELAKEITEALSIPTIGIG 203 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCC------------HHHHHHHHHhCCCCEEEec
Confidence 2366777889999999999885441 1568899999999999877
No 251
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.64 E-value=0.0018 Score=62.65 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=47.1
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
=.|...|-+-..... + +++.-+.++..++..++|+|+.|||+|.++++++++. |||.|++|..+..|++
T Consensus 151 ~~g~~~iYLEaGSGa--~---~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~a-GAD~IVvGn~iee~~~ 219 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA--Y---GPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEA-GADTIVVGNAIEEDPD 219 (230)
T ss_dssp HTT-SEEEEE--TTS--S---S-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCT-TSSEEEESCHHHHHH-
T ss_pred HhCCCEEEEEeCCCC--C---CCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHC-CCCEEEECCEEEEcch
Confidence 367777766543321 1 1222244555555569999999999999999999986 9999999999999998
No 252
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.63 E-value=0.015 Score=59.15 Aligned_cols=94 Identities=22% Similarity=0.279 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCc
Q 013813 210 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 288 (436)
Q Consensus 210 p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iP 288 (436)
++...+.++.++....+.+.+ +.+ .+..+.++.+.++|++.|.|....... ..-++.++.+++.. ++|
T Consensus 69 ~~~~~~~i~~vk~~l~v~~~~----~~~-~~~~~~~~~l~eagv~~I~vd~~~G~~------~~~~~~i~~ik~~~p~v~ 137 (325)
T cd00381 69 IEEQAEEVRKVKGRLLVGAAV----GTR-EDDKERAEALVEAGVDVIVIDSAHGHS------VYVIEMIKFIKKKYPNVD 137 (325)
T ss_pred HHHHHHHHHHhccCceEEEec----CCC-hhHHHHHHHHHhcCCCEEEEECCCCCc------HHHHHHHHHHHHHCCCce
Confidence 355566777776443333332 222 445677888888999999875422110 12257788898875 488
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
|++ |.|.|.++++.+++. |||+|.+|
T Consensus 138 Vi~-G~v~t~~~A~~l~~a-GaD~I~vg 163 (325)
T cd00381 138 VIA-GNVVTAEAARDLIDA-GADGVKVG 163 (325)
T ss_pred EEE-CCCCCHHHHHHHHhc-CCCEEEEC
Confidence 887 999999999999885 99999984
No 253
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.61 E-value=0.044 Score=56.24 Aligned_cols=122 Identities=12% Similarity=0.130 Sum_probs=93.2
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.+-+ +.++.||..+-|-+|- +++.-.+.++++++.++ +.+.|-..-+++.++++++
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg~----------------~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~ 201 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIGR----------------DPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALAL 201 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCC----------------CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 567665554 5667899999886541 24556677888888774 6677776678899999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh--CCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~--~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.+++.|+.+| ++.. .+-|++..+++++. +++||.+.=.+.+..++.++++...+|.|++
T Consensus 202 ~~~l~~~~~~~~-------EeP~---~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 202 ARAFADEGVTWF-------EEPV---SSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred HHHHHHhCcchh-------hCCC---ChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence 999999988765 2211 13478889999999 8899998888999999999999867887764
No 254
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.58 E-value=0.058 Score=53.97 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=121.2
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCccc--c-hhhcc-----Chhhhh--hhhhccCCCCCEEEEec
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLH--S-RIFTE-----SEKYRN--EEFATCKEDRPLFVQFC 165 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temis--a-~~l~~-----~~~~~~--~~~~~~~~e~plivQL~ 165 (436)
|++.+..+..+++| ++-|.-=-+++.+.|.+.+||--.. . .++-. ...... ..+ ....+.|+++=+=
T Consensus 5 lr~l~~~~~~l~~p--~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I-~~~~~iPviaD~d 81 (285)
T TIGR02317 5 FRAALAKEDILQIP--GAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRI-TRVTDLPLLVDAD 81 (285)
T ss_pred HHHHHhCCCcEEeC--CCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHH-HhccCCCEEEECC
Confidence 55556555666666 4445444467778898887754321 1 11111 000000 001 1234689998763
Q ss_pred C--CCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC----CC
Q 013813 166 A--NDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF----PN 237 (436)
Q Consensus 166 g--~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg----~~ 237 (436)
. .++....+.++.+ +.|+.+|.|--...- .+.|.+++.-+-..+...+=|++++++. +.++.|=-|.. ..
T Consensus 82 ~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~p--K~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g 159 (285)
T TIGR02317 82 TGFGEAFNVARTVREMEDAGAAAVHIEDQVLP--KRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEG 159 (285)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCc--cccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccC
Confidence 2 3488888888755 569999999754311 1223333332334444444445554443 45566666652 34
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE---EccCCCCHHHHHHHHHhcCcceee
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL---ANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi---anGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+++++=++...++|+|.|-+++-+ +.+.++++.+.+++|++ ..||-.-.-+++++-+ -|+..|.
T Consensus 160 ~deAI~Ra~ay~~AGAD~vfi~g~~-----------~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~-lGv~~v~ 227 (285)
T TIGR02317 160 LDAAIERAKAYVEAGADMIFPEALT-----------SLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELRE-AGYKMVI 227 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHH-cCCcEEE
Confidence 6788888999999999999998632 24668888888888984 3334211123444444 4999999
Q ss_pred eehHHh
Q 013813 315 SAESLL 320 (436)
Q Consensus 315 IGRgal 320 (436)
.|..++
T Consensus 228 ~~~~~~ 233 (285)
T TIGR02317 228 YPVTAF 233 (285)
T ss_pred EchHHH
Confidence 995543
No 255
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.58 E-value=0.021 Score=58.75 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=73.6
Q ss_pred ccccCChHHHHHHHHHHhccc-CccEEEEeccCCC-hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH----HH
Q 013813 204 AFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NA 277 (436)
Q Consensus 204 s~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~-~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~----~~ 277 (436)
+..+.+|+ ..+-++.+++.. +.||.+=+-.... .-+..++.+.++..++|++.+|--.........+.-++ +.
T Consensus 99 ~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~ 177 (352)
T PRK05437 99 RAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDN 177 (352)
T ss_pred HhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHH
Confidence 34456787 777777788766 7898887544211 11233455666777899999986432211112223355 57
Q ss_pred HHHHHhhCCCcEEE--ccCCCCHHHHHHHHHhcCcceeeee
Q 013813 278 IKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 278 i~~ik~~~~iPVia--nGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.+++.+++||+. +|.-.+.++++.+.+. |+|+|.++
T Consensus 178 i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~-Gvd~I~Vs 217 (352)
T PRK05437 178 IAEIVSALPVPVIVKEVGFGISKETAKRLADA-GVKAIDVA 217 (352)
T ss_pred HHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHc-CCCEEEEC
Confidence 88888888999986 6666788888887764 99998884
No 256
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.022 Score=58.88 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=79.9
Q ss_pred HHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcC
Q 013813 174 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAG 252 (436)
Q Consensus 174 ~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG 252 (436)
+-..++++|.|.|-|.-. + | +-..-.++++.+++.. ...|... + --+.+-++.|..+|
T Consensus 255 rl~ll~~aGvdvviLDSS--q--------G-----nS~~qiemik~iK~~yP~l~ViaG-----N-VVT~~qa~nLI~aG 313 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSS--Q--------G-----NSIYQLEMIKYIKETYPDLQIIAG-----N-VVTKEQAANLIAAG 313 (503)
T ss_pred HHHHhhhcCCcEEEEecC--C--------C-----cchhHHHHHHHHHhhCCCceeecc-----c-eeeHHHHHHHHHcc
Confidence 344456789999888732 1 2 2345578899998876 4444332 2 12234577788999
Q ss_pred ccEEEecc------Cccccc-CCCC-CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 253 CSLLAVHG------RTRDEK-DGKK-FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 253 ~d~I~VHg------Rt~~~~-~~~~-g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+|.+-|-- .|.+-. .+++ +.+-++ +.+.+...++|||+-|||.+..++.+.|.. ||+.||+|-
T Consensus 314 aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~-va~~A~q~gvpviADGGiq~~Ghi~KAl~l-GAstVMmG~ 384 (503)
T KOG2550|consen 314 ADGLRVGMGSGSICITQKVMACGRPQGTAVYK-VAEFANQFGVPCIADGGIQNVGHVVKALGL-GASTVMMGG 384 (503)
T ss_pred CceeEeccccCceeeeceeeeccCCcccchhh-HHHHHHhcCCceeecCCcCccchhHhhhhc-Cchhheecc
Confidence 99998832 222111 1111 122233 455666679999999999999999999986 999999994
No 257
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.57 E-value=0.028 Score=58.11 Aligned_cols=115 Identities=24% Similarity=0.362 Sum_probs=78.0
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEE-ec-cCcccccCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA-VH-GRTRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~-VH-gRt~~~~~~~~g~ad~~~i~ 279 (436)
-||..+.+.+++.++ . .+++||.+|.-.+.+.++....++.+.+.|..-|+ +| |-+.-+.. .....||..+.
T Consensus 207 I~s~~~~n~~LL~~~----a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~-~~~~ldl~~i~ 280 (360)
T PRK12595 207 IGARNMQNFELLKAA----G-RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKA-TRNTLDISAVP 280 (360)
T ss_pred ECcccccCHHHHHHH----H-ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCC-CCCCcCHHHHH
Confidence 377788887655544 3 45899999965556888888889999999986554 45 44322211 12247999999
Q ss_pred HHHhhCCCcEEEcc----CCCCHH--HHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 280 AVKNALRIPVLANG----NVRHME--DVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 280 ~ik~~~~iPVianG----GI~s~e--da~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
.+++..++||+++- |-+..- -+..++. .||||+||=+=. ||..
T Consensus 281 ~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva-~GAdg~~iE~H~--dp~~ 329 (360)
T PRK12595 281 ILKQETHLPVMVDVTHSTGRRDLLLPTAKAALA-IGADGVMAEVHP--DPAV 329 (360)
T ss_pred HHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHH-cCCCeEEEEecC--CCCC
Confidence 99998899999943 322222 3344455 499999998665 6654
No 258
>PRK14017 galactonate dehydratase; Provisional
Probab=96.57 E-value=0.058 Score=55.93 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=102.5
Q ss_pred CCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+...+++.+++++.+-+ +.++.||..+-+..|=+.. . .++ ..+++.-.+.++++++.+ ++.+.|-..-
T Consensus 114 i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~--~---~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDaN~ 186 (382)
T PRK14017 114 IRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ--Y---IDS--PRKVDAAVARVAAVREAVGPEIGIGVDFHG 186 (382)
T ss_pred eeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc--c---ccc--HHHHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 4565556667888886555 4567799998887531110 0 000 123455677888888877 4667777666
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+++.+++..+++.+++.|+.+| ++... .-|++..+++++...+||.+.=.+.+.+++.++++...+|.|.
T Consensus 187 ~w~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~ 256 (382)
T PRK14017 187 RVHKPMAKVLAKELEPYRPMFI-------EEPVL---PENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQ 256 (382)
T ss_pred CCCHHHHHHHHHhhcccCCCeE-------ECCCC---cCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEe
Confidence 7888999999999999998877 22111 3468889999999999999988999999999999987788876
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 257 ~d 258 (382)
T PRK14017 257 PD 258 (382)
T ss_pred cC
Confidence 54
No 259
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.57 E-value=0.12 Score=51.78 Aligned_cols=167 Identities=17% Similarity=0.244 Sum_probs=96.9
Q ss_pred CCcEEEcc-CCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHc
Q 013813 102 RPKLIVAP-MVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVE 180 (436)
Q Consensus 102 ~~~i~lAP-M~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~ 180 (436)
++|+++|. +.+.+. .+.+.+.+.|++.+.|.-++.+.-.. ...|-++..-
T Consensus 12 ~nPv~~aag~~~~~~-~~~~~~~~~g~g~v~~kti~~~~~~g-------------~~~pr~~~~~--------------- 62 (301)
T PRK07259 12 KNPVMPASGTFGFGG-EYARFYDLNGLGAIVTKSTTLEPREG-------------NPTPRIAETP--------------- 62 (301)
T ss_pred CCCcEECCcCCCCCH-HHHHHhhhcCCcEEEeCCCCCCCCCC-------------CCCCcEEecC---------------
Confidence 67888887 465555 44445567899999888876542111 1123232220
Q ss_pred CCCcEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC-ccEEEe
Q 013813 181 PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAV 258 (436)
Q Consensus 181 ~g~D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG-~d~I~V 258 (436)
+++ +| +|-+.. | -...+.++.... +..+.|+.+=+. |.+.++..+.|+.++++| +|+|.+
T Consensus 63 ---~~~-~n~~g~~~~-------g-----~~~~~~~~~~~~-~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iEl 124 (301)
T PRK07259 63 ---GGM-LNAIGLQNP-------G-----VDAFIEEELPWL-EEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIEL 124 (301)
T ss_pred ---Cce-eecCCCCCc-------C-----HHHHHHHHHHHH-hccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEE
Confidence 111 12 222211 1 012334444433 344788888864 456788899999999999 999988
Q ss_pred ccCcccccC-----CCCCccCHHHHHHHHhhCCCcEEE--ccCCCCHHHHHHHHHhcCcceeee
Q 013813 259 HGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 259 HgRt~~~~~-----~~~g~ad~~~i~~ik~~~~iPVia--nGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+.-...... ......-++.++.+++.+++||++ +.++.+..++.+.+++.|+|+|.+
T Consensus 125 N~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 125 NISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred ECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 432111101 111122357778888888899875 445555556666677779999765
No 260
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=96.57 E-value=0.047 Score=56.26 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ 244 (436)
.++.+.++++.+. .|++.+-|..||+... .-.+.++++++.++ +.+.+-..-+++.++++.+
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~ 207 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWTLEEAIRL 207 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHH
Confidence 6777777887665 6999999999988642 44566777787774 6777776678888889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++.+++.++.+| ++.. .+-|++..+++++.+.+||.+.=-+.+..|++++++...+|.|++
T Consensus 208 ~~~l~~~~l~~i-------EeP~---~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~ 268 (372)
T COG4948 208 ARALEEYGLEWI-------EEPL---PPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQP 268 (372)
T ss_pred HHHhcccCcceE-------ECCC---CccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecC
Confidence 999999997776 2211 134788889999987899999999999999999999866888764
No 261
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.55 E-value=0.044 Score=52.01 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=84.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 237 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~ 237 (436)
.++.+-|=-.+.++..+.++.+....++|+++..+=. .+| .++++++++...+++.+|+= .-
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l~~------~~G----------~~~v~~ir~~~~i~~D~k~~--di 65 (215)
T PRK13813 4 SRIILALDVTDRERALKIAEELDDYVDAIKVGWPLVL------ASG----------LGIIEELKRYAPVIADLKVA--DI 65 (215)
T ss_pred CCEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHHHH------hhC----------HHHHHHHHhcCCEEEEeecc--cc
Confidence 3466666445555555444444445688888853311 133 25666777666777778853 11
Q ss_pred hhhHHHHHHHHHHcCccEEEeccCcccc----------cCC---------------------------------CCC---
Q 013813 238 LQDTIKYAKMLEDAGCSLLAVHGRTRDE----------KDG---------------------------------KKF--- 271 (436)
Q Consensus 238 ~~d~~~~ak~le~aG~d~I~VHgRt~~~----------~~~---------------------------------~~g--- 271 (436)
......+++.+.++|+|.+++|.-.... ..+ ..|
T Consensus 66 ~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~ 145 (215)
T PRK13813 66 PNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA 145 (215)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 1223334577778999999998754100 000 000
Q ss_pred -ccCHHHHHHHHhhCCCc-EEEccCCCCH-HHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 272 -RADWNAIKAVKNALRIP-VLANGNVRHM-EDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 272 -~ad~~~i~~ik~~~~iP-VianGGI~s~-eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
....+.++++++..+-. .+..|||... ..+..+++. |+|++++||+++..++.
T Consensus 146 ~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~a-Gad~iV~Gr~I~~~~d~ 201 (215)
T PRK13813 146 PATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKA-GADYVIVGRSIYNAADP 201 (215)
T ss_pred CCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHc-CCCEEEECcccCCCCCH
Confidence 00122334555544322 3477999864 246777775 99999999998776653
No 262
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.53 E-value=0.38 Score=45.95 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=101.1
Q ss_pred CCCCcHHHHHHHHHhCCCeEEeCcc--cchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEE
Q 013813 111 VDNSELPFRMLCRRYGAEAAYTPML--HSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDI 188 (436)
Q Consensus 111 ~gvtd~~fR~l~~~~Ga~l~~Temi--sa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdL 188 (436)
-|+++..=-.+|.++|++++--=+. |.+ +...+..+ ......+.....+.=+...+++.+.+.++ +.+.|.|.|
T Consensus 8 CGi~~~eda~~~~~~Gad~iGfI~~~~S~R-~V~~~~a~-~i~~~~~~~i~~VgVf~~~~~~~i~~~~~--~~~~d~vQL 83 (210)
T PRK01222 8 CGITTPEDAEAAAELGADAIGFVFYPKSPR-YVSPEQAA-ELAAALPPFVKVVGVFVNASDEEIDEIVE--TVPLDLLQL 83 (210)
T ss_pred CCCCcHHHHHHHHHcCCCEEEEccCCCCCC-cCCHHHHH-HHHHhCCCCCCEEEEEeCCCHHHHHHHHH--hcCCCEEEE
Confidence 4777777778899999986332111 222 22111111 11121122222333344567777766654 236799999
Q ss_pred ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 189 NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 189 N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
|-.. +++. ++.+++..++++.--++.... .+... +... ...+|++.+..... ..+
T Consensus 84 Hg~e----------------~~~~----~~~l~~~~~~~iik~i~v~~~-~~l~~-~~~~-~~~~d~~L~Ds~~~--~~G 138 (210)
T PRK01222 84 HGDE----------------TPEF----CRQLKRRYGLPVIKALRVRSA-GDLEA-AAAY-YGDADGLLLDAYVG--LPG 138 (210)
T ss_pred CCCC----------------CHHH----HHHHHhhcCCcEEEEEecCCH-HHHHH-HHhh-hccCCEEEEcCCCC--CCC
Confidence 9422 2333 344555456777655555422 22211 1111 23578888876543 223
Q ss_pred CCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 269 KKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 269 ~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++| ..||+.+. +..+.|++..|||. ++.+.++++..+..||=+.+|.=..|
T Consensus 139 GtG~~~dw~~l~---~~~~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE~~~ 190 (210)
T PRK01222 139 GTGKTFDWSLLP---AGLAKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVESAP 190 (210)
T ss_pred CCCCccchHHhh---hccCCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceECCC
Confidence 333 46898772 12367999999996 78899988866888888877764433
No 263
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.52 E-value=0.073 Score=55.43 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=93.0
Q ss_pred CCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 167 NDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 167 ~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
.+++++.+.+ +.++.||..+-|..|- .+++.-.+.|+++++.+ ++.+.|-..-+|+.++++.
T Consensus 159 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~ 223 (385)
T cd03326 159 DDLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIA 223 (385)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 3566665555 5567799999997641 23444567777888776 4677777777789999999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCc----ceeee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC----EGVLS 315 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGa----DgVmI 315 (436)
+++.+++.++.+| ++... +-|++..+++++.+++||.+.=.+.+..++.++++...+ |.|++
T Consensus 224 ~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~ 289 (385)
T cd03326 224 YAKALAPYGLRWY-------EEPGD---PLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQF 289 (385)
T ss_pred HHHHhhCcCCCEE-------ECCCC---ccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEe
Confidence 9999999998877 22111 347888999999999999998899999999999987444 76653
No 264
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.51 E-value=0.053 Score=51.67 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=84.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCch-----hhhc----CcccccccCChHHHHHHHHHHhcccCc
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR-----IARR----GNYGAFLMDNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~-----~~~~----~~~Gs~Ll~~p~~v~eIv~av~~~~~i 226 (436)
..+++.=|-+.++++..+.++.+ +.|++.||+.+-.|.. ..++ -.-|+.-.-+++.+++.+++=.
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA----- 81 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA----- 81 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-----
Confidence 46788779999999999999866 5589999999855542 0000 0012222233343333333210
Q ss_pred cEEEEeccCCChhhHHHH-----------------HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCc
Q 013813 227 PVSCKIRVFPNLQDTIKY-----------------AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIP 288 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~-----------------ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iP 288 (436)
.+.|- .+.+ .+..+. +..+.++|++.|-+..-.. . |. -.+++.++.- .++|
T Consensus 82 ~Fivs--P~~~-~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~-----~-GG--~~yikal~~plp~i~ 150 (204)
T TIGR01182 82 QFIVS--PGLT-PELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEV-----S-GG--VKMLKALAGPFPQVR 150 (204)
T ss_pred CEEEC--CCCC-HHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchh-----c-CC--HHHHHHHhccCCCCc
Confidence 00000 0000 011010 1112334444443332110 0 00 3668888764 4899
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++..|||. .+.+.++|+. |+.+|.+|+.+.....
T Consensus 151 ~~ptGGV~-~~N~~~~l~a-Ga~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 151 FCPTGGIN-LANVRDYLAA-PNVACGGGSWLVPKDL 184 (204)
T ss_pred EEecCCCC-HHHHHHHHhC-CCEEEEEChhhcCchh
Confidence 99999997 5999999997 9999999987775433
No 265
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.49 E-value=0.031 Score=56.12 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=67.4
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHH
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l 305 (436)
.|+.+.+-...+.+...+.++.+++.|++.|.+|.-..... . ...|+.++++++.+++||+.- +|.+.++++.+.
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~--~--~~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~ 190 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLG--R--RLTWDDLAWLRSQWKGPLILK-GILTPEDALRAV 190 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC--C--CCCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHHH
Confidence 68888875554667777888888999999999987544321 1 257899999999999999886 478999999888
Q ss_pred HhcCcceeeee
Q 013813 306 EETGCEGVLSA 316 (436)
Q Consensus 306 ~~tGaDgVmIG 316 (436)
+. |+|+|.+.
T Consensus 191 ~~-G~d~I~v~ 200 (299)
T cd02809 191 DA-GADGIVVS 200 (299)
T ss_pred HC-CCCEEEEc
Confidence 75 99999874
No 266
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.49 E-value=0.042 Score=54.59 Aligned_cols=115 Identities=19% Similarity=0.255 Sum_probs=79.6
Q ss_pred HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 177 RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
++++ +|+-+|-.=---|......+ |-+=+++|+.+.+| ++.+++||.-++|.+. ..-++.+.++|+|.
T Consensus 22 ~~ae~aga~~v~~~~~~~~~~~~~~--~v~R~~~~~~I~~I----k~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvDi 90 (283)
T cd04727 22 RIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIKEI----MDAVSIPVMAKVRIGH-----FVEAQILEALGVDM 90 (283)
T ss_pred HHHHHcCceEEeeeccCchhhhhcC--CeeecCCHHHHHHH----HHhCCCCeEEeeehhH-----HHHHHHHHHcCCCE
Confidence 3444 36444433223566553333 77788888876655 5556899999988754 44578899999999
Q ss_pred EEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 256 LAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 256 I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
|.-+.|.+ + ..+.+..+|...++|++ .|+.|.+++.+..+. |+|.|-
T Consensus 91 IDaT~r~r--------P-~~~~~~~iK~~~~~l~M--AD~stleEal~a~~~-Gad~I~ 137 (283)
T cd04727 91 IDESEVLT--------P-ADEEHHIDKHKFKVPFV--CGARNLGEALRRISE-GAAMIR 137 (283)
T ss_pred EeccCCCC--------c-HHHHHHHHHHHcCCcEE--ccCCCHHHHHHHHHC-CCCEEE
Confidence 95333322 2 35678888887766665 589999999999997 999764
No 267
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.48 E-value=0.077 Score=52.09 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=90.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCC
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~ 236 (436)
|+..-+.+.+++...++.+.++.||..+-+-+| ..+++.-.+.++++++.++ +.+.+-..-+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w 138 (263)
T cd03320 74 PVNALLPAGDAAALGEAKAAYGGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDANGGW 138 (263)
T ss_pred ceeEEecCCCHHHHHHHHHHHhCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCCCCC
Confidence 344445556665555555666779999988754 1223445566777777663 45555555578
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+.+++..+++.+++.++.+| ++... +-|++..++++ .++||.+.=.+.+.+++.++++...+|.|++
T Consensus 139 ~~~~A~~~~~~l~~~~i~~i-------EqP~~---~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~ 205 (263)
T cd03320 139 SLEEALAFLEALAAGRIEYI-------EQPLP---PDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGALVL 205 (263)
T ss_pred CHHHHHHHHHhhcccCCceE-------ECCCC---hHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEEEE
Confidence 88999999999999888776 22111 23566666666 6899999888999999999999867887765
No 268
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=96.47 E-value=0.015 Score=57.24 Aligned_cols=150 Identities=22% Similarity=0.282 Sum_probs=68.1
Q ss_pred CCCCEEEEecCCCHHH-HHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCC---hHHHHHHHHHHhcc-c-CccE
Q 013813 156 EDRPLFVQFCANDPEI-LLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDN---LPLVKSLVEKLALN-L-NVPV 228 (436)
Q Consensus 156 ~e~plivQL~g~d~e~-~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~---p~~v~eIv~av~~~-~-~iPV 228 (436)
.+.|++.=+++.||-. +..-.+.+. .||.+|. |+ |..-...|.|...|... .++=.++++..++. . .+|+
T Consensus 80 ~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 80 KDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--E
T ss_pred cCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeee
Confidence 5689999999999853 333334454 4888874 65 54322233333333221 11112333333322 1 2232
Q ss_pred EEEeccCCChhhHHHHHHHHHHcCccEEEecc-CcccccCCCCCccCH----HHHHHHHhh---C--CCc-EEEccCCCC
Q 013813 229 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADW----NAIKAVKNA---L--RIP-VLANGNVRH 297 (436)
Q Consensus 229 sVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg-Rt~~~~~~~~g~ad~----~~i~~ik~~---~--~iP-VianGGI~s 297 (436)
.. +.++ |+.+.++|+|.|++|- .|..+.-+.+....+ +.+.++.+. + ++- ++..|-|.+
T Consensus 157 vf------~~e~----A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~ 226 (268)
T PF09370_consen 157 VF------NEEQ----ARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIAT 226 (268)
T ss_dssp E-------SHHH----HHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-S
T ss_pred ec------CHHH----HHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 21 3333 5556689999999994 454433222111222 223333332 2 444 445556999
Q ss_pred HHHHHHHHHhcC-cceeeeehH
Q 013813 298 MEDVQKCLEETG-CEGVLSAES 318 (436)
Q Consensus 298 ~eda~~~l~~tG-aDgVmIGRg 318 (436)
++|++.+++.+. ++|..-|..
T Consensus 227 p~D~~~~l~~t~~~~Gf~G~Ss 248 (268)
T PF09370_consen 227 PEDAQYVLRNTKGIHGFIGASS 248 (268)
T ss_dssp HHHHHHHHHH-TTEEEEEESTT
T ss_pred HHHHHHHHhcCCCCCEEecccc
Confidence 999999999986 899876643
No 269
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=96.46 E-value=0.079 Score=54.56 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=93.5
Q ss_pred CCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRl 234 (436)
.|+-..+.+.+++.+.+.+ +..+.||..+-+.. .+.|+++++.++ +.+.+...-
T Consensus 116 v~~ya~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN~ 172 (361)
T cd03322 116 IMVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVHH 172 (361)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECCC
Confidence 3444444556777775554 45667988887742 456788887773 667777666
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+|+.+++..+++.+++.++.+| ++... +-|++..+++++..++||.+.=.+.+.+++.++++...+|.+.
T Consensus 173 ~w~~~~A~~~~~~l~~~~l~~i-------EeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~ 242 (361)
T cd03322 173 RLTPNQAARFGKDVEPYRLFWM-------EDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIR 242 (361)
T ss_pred CCCHHHHHHHHHHhhhcCCCEE-------ECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEe
Confidence 7899999999999999988876 22111 3478889999999999999888899999999999986788775
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+-
T Consensus 243 ~d 244 (361)
T cd03322 243 TT 244 (361)
T ss_pred cC
Confidence 43
No 270
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.41 E-value=0.033 Score=55.24 Aligned_cols=110 Identities=15% Similarity=0.252 Sum_probs=75.8
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-ccCcccc-cCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDE-KDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-HgRt~~~-~~~~~g~ad~~~i~ 279 (436)
-||..+.+.+++.++ ...++||.+|--...+.++....++.+...|-..+++ |..++.. .+. ....|+..+.
T Consensus 116 Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~-~~~vdl~~i~ 189 (266)
T PRK13398 116 IGSRNMQNFELLKEV-----GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYT-RNTLDLAAVA 189 (266)
T ss_pred ECcccccCHHHHHHH-----hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCC-HHHHHHHHHH
Confidence 477888887776655 2568999999666667888888888999999865544 5322111 121 1246888889
Q ss_pred HHHhhCCCcEEEc-cCCCC-----HHHHHHHHHhcCcceeeeehH
Q 013813 280 AVKNALRIPVLAN-GNVRH-----MEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 280 ~ik~~~~iPVian-GGI~s-----~eda~~~l~~tGaDgVmIGRg 318 (436)
.+++..++||+.. .=... ...+...+.. ||||+||=+-
T Consensus 190 ~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~-Ga~Gl~iE~H 233 (266)
T PRK13398 190 VIKELSHLPIIVDPSHATGRRELVIPMAKAAIAA-GADGLMIEVH 233 (266)
T ss_pred HHHhccCCCEEEeCCCcccchhhHHHHHHHHHHc-CCCEEEEecc
Confidence 9998889999983 33333 4555566654 9999998743
No 271
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.38 E-value=0.036 Score=56.57 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=71.4
Q ss_pred ccccCChHHHHHHHHHHhc-ccCccEEEEeccCCChh-hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH----HH
Q 013813 204 AFLMDNLPLVKSLVEKLAL-NLNVPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NA 277 (436)
Q Consensus 204 s~Ll~~p~~v~eIv~av~~-~~~iPVsVKiRlg~~~~-d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~----~~ 277 (436)
+..+.+|+...+. +.+++ ..++|+.+-+....... +..++.+.++..+++++.+|--.........+..++ +.
T Consensus 92 ~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~ 170 (333)
T TIGR02151 92 RAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEK 170 (333)
T ss_pred hhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHH
Confidence 3345678876666 66776 56899988754321111 133455556666788888886432211111123344 67
Q ss_pred HHHHHhhCCCcEEE--ccCCCCHHHHHHHHHhcCcceeeee
Q 013813 278 IKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 278 i~~ik~~~~iPVia--nGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
++.+++.+++||+. +|.-.+.+.++.+.+ .|+|+|-++
T Consensus 171 i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~-aGvd~I~Vs 210 (333)
T TIGR02151 171 IAEICSQLSVPVIVKEVGFGISKEVAKLLAD-AGVSAIDVA 210 (333)
T ss_pred HHHHHHhcCCCEEEEecCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 88899988999986 565578888877666 499999886
No 272
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=96.35 E-value=0.025 Score=52.43 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=59.2
Q ss_pred CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccC
Q 013813 182 YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 182 g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgR 261 (436)
|+-+|-.=---|......| |-+=|.||..+.+|.+++ .+||..|.|+|... -|+.|++.|+|+|.=+--
T Consensus 34 GA~AVMaLervPadiR~~G--GVaRMsDP~~I~eI~~aV----sIPVMAK~RIGHfv-----EAqiLealgVD~IDESEV 102 (208)
T PF01680_consen 34 GAVAVMALERVPADIRAAG--GVARMSDPKMIKEIMDAV----SIPVMAKVRIGHFV-----EAQILEALGVDYIDESEV 102 (208)
T ss_dssp T-SEEEE-SS-HHHHHHTT--S---S--HHHHHHHHHH-----SSEEEEEEETT-HH-----HHHHHHHTT-SEEEEETT
T ss_pred CCeEEEEeccCCHhHHhcC--CccccCCHHHHHHHHHhe----Eeceeeccccceee-----hhhhHHHhCCceeccccc
Confidence 5434433223455544443 788999999988887664 79999999998632 288999999999965422
Q ss_pred cccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 262 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 262 t~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-. ++|... .--|...++|++. |-++.-++.+-+.+ ||..+
T Consensus 103 LT--------pAD~~~-HI~K~~F~vPFVc--GarnLGEALRRI~E-GAaMI 142 (208)
T PF01680_consen 103 LT--------PADEEN-HIDKHNFKVPFVC--GARNLGEALRRIAE-GAAMI 142 (208)
T ss_dssp S----------S-SS-----GGG-SS-EEE--EESSHHHHHHHHHT-T-SEE
T ss_pred cc--------cccccc-cccchhCCCCeEe--cCCCHHHHHhhHHh-hhhhh
Confidence 11 333322 1223446888765 45678888877776 66544
No 273
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=96.34 E-value=0.12 Score=50.86 Aligned_cols=152 Identities=20% Similarity=0.224 Sum_probs=94.8
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCc-ccch--hhccChh----hh---hhhhhccCCCCC-EEEEec-C---CCHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPM-LHSR--IFTESEK----YR---NEEFATCKEDRP-LFVQFC-A---NDPEILLN 174 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Tem-isa~--~l~~~~~----~~---~~~~~~~~~e~p-livQL~-g---~d~e~~~~ 174 (436)
|.++=|..+-+++.+.|.+.++|.- ++.. ++..... .. ...+. .-.+.| +++=+- | +++++..+
T Consensus 16 ~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~-r~~~~p~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 16 MLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVR-RGAPRALVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHH-hcCCCCeEEEeCCCCcccCCHHHHHH
Confidence 6678899999999999999988762 1111 1111100 00 00111 133567 555452 2 45777666
Q ss_pred HH-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--------------CCC-
Q 013813 175 AA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--------------FPN- 237 (436)
Q Consensus 175 AA-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--------------g~~- 237 (436)
.+ +.++ .|+++|.|--| ....+.|+++++ .++||.-=+-+ +.+
T Consensus 95 ~a~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~ 154 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG-------------------AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTE 154 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCH
Confidence 55 6667 79999998743 245555666653 36776622211 222
Q ss_pred --hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC
Q 013813 238 --LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 294 (436)
Q Consensus 238 --~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG 294 (436)
.+++++-++.++++|++.|.+-+-. -+.+++|.+.+++|+|+.|.
T Consensus 155 ~~a~~~i~ra~a~~~AGA~~i~lE~v~------------~~~~~~i~~~v~iP~igiGa 201 (254)
T cd06557 155 EEAERLLEDALALEEAGAFALVLECVP------------AELAKEITEALSIPTIGIGA 201 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcCCC------------HHHHHHHHHhCCCCEEEecc
Confidence 3466777889999999999885442 15688999999999998883
No 274
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.33 E-value=0.094 Score=53.53 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=99.5
Q ss_pred CCEEEEe-cCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEec
Q 013813 158 RPLFVQF-CANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 233 (436)
Q Consensus 158 ~plivQL-~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiR 233 (436)
.|+.... ...+++++.+-+ +.++.||..+-+..|... .. + ..+++.-.+.++++++.+ ++.+.+-..
T Consensus 109 i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~----~~--~---~~~~~~d~~~v~avr~~~g~~~~l~vDan 179 (341)
T cd03327 109 IPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGP----SD--G---HAGLRKNVELVRAIREAVGYDVDLMLDCY 179 (341)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC----Cc--c---hHHHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 4444443 245788776555 456779999998765310 00 0 013456677788888877 356777666
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.+++..+++.+++.++.+| ++... +-|++..+.+++.+++||.+.=.+.+..++.++++...+|.|
T Consensus 180 ~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i 249 (341)
T cd03327 180 MSWNLNYAIKMARALEKYELRWI-------EEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDIL 249 (341)
T ss_pred CCCCHHHHHHHHHHhhhcCCccc-------cCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEE
Confidence 67888999999999999887665 22111 347888999999999999988889999999999998778887
Q ss_pred eee
Q 013813 314 LSA 316 (436)
Q Consensus 314 mIG 316 (436)
++-
T Consensus 250 ~~d 252 (341)
T cd03327 250 QPD 252 (341)
T ss_pred ecC
Confidence 643
No 275
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.33 E-value=0.42 Score=48.99 Aligned_cols=156 Identities=11% Similarity=0.108 Sum_probs=83.9
Q ss_pred CCCCEEEEecCCCH--------HHHH-HHHHHHcCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhccc
Q 013813 156 EDRPLFVQFCANDP--------EILL-NAARRVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL 224 (436)
Q Consensus 156 ~e~plivQL~g~d~--------e~~~-~AA~~v~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~ 224 (436)
.+.|+++.|-++.. +.+. ..-+.+.-|+|+|-+ |+|.+.. -+..+.+.+++++. ...
T Consensus 124 ~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E-----------~~ml~~l~~i~~ea-~~~ 191 (348)
T PRK09250 124 HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEES-----------RRQIEEISEAFEEA-HEL 191 (348)
T ss_pred CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHH-----------HHHHHHHHHHHHHH-HHh
Confidence 35678888776421 1111 112345668887655 5553321 01123445555554 345
Q ss_pred CccEEEEec-cCCC----------hhhHHHHHHHHHHcCccEEEeccCc-------------ccccC-CCCCccCHHHHH
Q 013813 225 NVPVSCKIR-VFPN----------LQDTIKYAKMLEDAGCSLLAVHGRT-------------RDEKD-GKKFRADWNAIK 279 (436)
Q Consensus 225 ~iPVsVKiR-lg~~----------~~d~~~~ak~le~aG~d~I~VHgRt-------------~~~~~-~~~g~ad~~~i~ 279 (436)
++|+.+=+= .|.. .+-+...++...+.|+|.|-+---+ ....+ .......-+.++
T Consensus 192 GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~ 271 (348)
T PRK09250 192 GLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVR 271 (348)
T ss_pred CCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHH
Confidence 899876321 1211 1223345677889999999763211 11000 011111234456
Q ss_pred HHHhhC---CCcEEEccCCC-CHHHHH----HH---HHhcCcceeeeehHHhhCCc
Q 013813 280 AVKNAL---RIPVLANGNVR-HMEDVQ----KC---LEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 280 ~ik~~~---~iPVianGGI~-s~eda~----~~---l~~tGaDgVmIGRgal~nP~ 324 (436)
.+.+.. .+||+..||=. +.+++. .+ ++ .|+.||.+||-....|.
T Consensus 272 ~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~-aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 272 YQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKR-AGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhh-cCCcchhhchhhhcCCc
Confidence 666665 79999999877 444444 44 44 49999999997665553
No 276
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.33 E-value=0.079 Score=56.86 Aligned_cols=69 Identities=23% Similarity=0.389 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+.++.+.++|++.|++-.-.... ..-++.++.+++.. ++||++ |+|.|.+++..+++. |||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~~------~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~a-Gad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGHS------EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEA-GADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCcc------hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHc-CCCEEEEC
Confidence 45778899999999988763211100 12357788888876 899888 999999999999986 99999775
No 277
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.32 E-value=0.11 Score=52.25 Aligned_cols=205 Identities=16% Similarity=0.127 Sum_probs=123.1
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCc--ccch--hhccChhh-hhhhh-----hccCCCCCEEEEec
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPM--LHSR--IFTESEKY-RNEEF-----ATCKEDRPLFVQFC 165 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Tem--isa~--~l~~~~~~-~~~~~-----~~~~~e~plivQL~ 165 (436)
|++.+-.+..+++|= +-|.-=-+++.+.|.+.+||-- +++. ++-..... ....+ -....+.|+++=+=
T Consensus 9 lr~ll~~~~~l~~p~--~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d 86 (292)
T PRK11320 9 FRAALAAEKPLQIVG--TINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDID 86 (292)
T ss_pred HHHHHcCCCcEEecC--CCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECC
Confidence 666666666666654 4454444677788988877543 2211 11111000 00000 01234679998763
Q ss_pred C--CCHHHHHHHHHHH-cCCCcEEEEecCC-CchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC----C
Q 013813 166 A--NDPEILLNAARRV-EPYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF----P 236 (436)
Q Consensus 166 g--~d~e~~~~AA~~v-~~g~D~IdLN~GC-P~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg----~ 236 (436)
. .++....+.++.+ +.|+.+|.|--.. |. +.+..++.-+-..+...+=|++++++. +.++.|=-|.. .
T Consensus 87 ~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK---~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~ 163 (292)
T PRK11320 87 TGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAK---RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVE 163 (292)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc---ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCccccc
Confidence 2 2889998888765 5699999996543 22 123333333334454444445544443 56666666652 3
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE---ccCC---CCHHHHHHHHHhcCc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA---NGNV---RHMEDVQKCLEETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia---nGGI---~s~eda~~~l~~tGa 310 (436)
..+++++=++...++|+|.|-+++-+ +.+.++++.+.++.|+++ +||- .+.++ +-+ -|+
T Consensus 164 g~deAI~Ra~aY~eAGAD~ifi~~~~-----------~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~---L~~-lGv 228 (292)
T PRK11320 164 GLDAAIERAQAYVEAGADMIFPEAMT-----------ELEMYRRFADAVKVPILANITEFGATPLFTTEE---LAS-AGV 228 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCC-----------CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHH---HHH-cCC
Confidence 46788888999999999999998732 357788888888888843 3432 34444 333 499
Q ss_pred ceeeeehHHh
Q 013813 311 EGVLSAESLL 320 (436)
Q Consensus 311 DgVmIGRgal 320 (436)
..|..|-.++
T Consensus 229 ~~v~~~~~~~ 238 (292)
T PRK11320 229 AMVLYPLSAF 238 (292)
T ss_pred cEEEEChHHH
Confidence 9999996554
No 278
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.32 E-value=0.065 Score=53.05 Aligned_cols=143 Identities=13% Similarity=0.221 Sum_probs=85.2
Q ss_pred CCCCEEEEecCCC-------HHHHHHHH-HHHcCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC
Q 013813 156 EDRPLFVQFCAND-------PEILLNAA-RRVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 225 (436)
Q Consensus 156 ~e~plivQL~g~d-------~e~~~~AA-~~v~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~ 225 (436)
.+.|++++|-++. .+.+.-.. +.++-|+|+|-+ |.|.+.. -+..+.+.+++++. ...+
T Consensus 73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E-----------~~~l~~l~~v~~ea-~~~G 140 (264)
T PRK08227 73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYE-----------HQSIKNIIQLVDAG-LRYG 140 (264)
T ss_pred CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHH-----------HHHHHHHHHHHHHH-HHhC
Confidence 3567888888742 12222212 345668887655 5553321 01123344555553 3558
Q ss_pred ccEEEEeccCCCh----hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCC-HHH
Q 013813 226 VPVSCKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MED 300 (436)
Q Consensus 226 iPVsVKiRlg~~~----~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s-~ed 300 (436)
+|+.+=.-.|... +-+...++...+.|+|.|-+- |++ +.++++.+...+||+..||=+. .++
T Consensus 141 ~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~---------y~~----~~f~~vv~a~~vPVviaGG~k~~~~~ 207 (264)
T PRK08227 141 MPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY---------YVE----EGFERITAGCPVPIVIAGGKKLPERD 207 (264)
T ss_pred CcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC---------CCH----HHHHHHHHcCCCcEEEeCCCCCCHHH
Confidence 9988833234322 222344677889999998442 222 5677888888999999998763 344
Q ss_pred HHH----HHHhcCcceeeeehHHhhCCc
Q 013813 301 VQK----CLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 301 a~~----~l~~tGaDgVmIGRgal~nP~ 324 (436)
+.+ .++ .|+.||.+||=....+.
T Consensus 208 ~L~~v~~ai~-aGa~Gv~~GRNIfQ~~~ 234 (264)
T PRK08227 208 ALEMCYQAID-EGASGVDMGRNIFQSEH 234 (264)
T ss_pred HHHHHHHHHH-cCCceeeechhhhccCC
Confidence 443 444 49999999997766554
No 279
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.32 E-value=0.017 Score=62.06 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=58.3
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc---eeeeehHHhh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE---GVLSAESLLE 321 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD---gVmIGRgal~ 321 (436)
+..+.+.|+|+|.+..-..........+..++.++.+++..++||++-|||. .+++.++++. |++ +|.++++++.
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~~~-G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVMES-GAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHHHc-CCCcCceEEEEeHHhc
Confidence 4556678999998643322211111124578999999888899999999996 8999988875 888 9999999986
Q ss_pred CCcc
Q 013813 322 NPAL 325 (436)
Q Consensus 322 nP~l 325 (436)
.++.
T Consensus 481 ~~d~ 484 (502)
T PLN02898 481 QEDV 484 (502)
T ss_pred CCCH
Confidence 5443
No 280
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=96.29 E-value=0.16 Score=52.35 Aligned_cols=133 Identities=16% Similarity=0.243 Sum_probs=93.3
Q ss_pred CCEEEEecCCCHHH-HHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEec
Q 013813 158 RPLFVQFCANDPEI-LLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~-~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiR 233 (436)
.|+...+...++++ +.++.+.++ .||..+-+-.| . .+++.-.+.++++++.++ +.+.+-..
T Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg------------~---~~~~~d~~~v~~~re~~g~~~~l~~DaN 195 (368)
T TIGR02534 131 VDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIG------------A---RDPADDVAHVVAIAKALGDRASVRVDVN 195 (368)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeC------------C---CCcHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 45555555555554 444444453 68988888654 1 234445566777777663 44555555
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.+++.++++.+++.++.+| ++... +-|++..+++++...+||.+.-.+.+..++.++++..++|.|
T Consensus 196 ~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~ 265 (368)
T TIGR02534 196 AAWDERTALHYLPQLADAGVELI-------EQPTP---AENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVF 265 (368)
T ss_pred CCCCHHHHHHHHHHHHhcChhhe-------ECCCC---cccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEE
Confidence 56888999999999999887665 22111 246788889999999999998899999999999998788987
Q ss_pred ee
Q 013813 314 LS 315 (436)
Q Consensus 314 mI 315 (436)
.+
T Consensus 266 ~~ 267 (368)
T TIGR02534 266 AL 267 (368)
T ss_pred EE
Confidence 64
No 281
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=96.27 E-value=0.12 Score=54.19 Aligned_cols=142 Identities=16% Similarity=0.199 Sum_probs=98.5
Q ss_pred ecCCCHHHHH-HHHHHHcCCCcEEEEecCCCch---h-hhcC---cccc--cc-------c---CChHHHHHHHHHHhcc
Q 013813 164 FCANDPEILL-NAARRVEPYCDYVDINLGCPQR---I-ARRG---NYGA--FL-------M---DNLPLVKSLVEKLALN 223 (436)
Q Consensus 164 L~g~d~e~~~-~AA~~v~~g~D~IdLN~GCP~~---~-~~~~---~~Gs--~L-------l---~~p~~v~eIv~av~~~ 223 (436)
+.+.+++++. ++.+.++.||..+-+.+|-|-. . ...+ .++- .. . ...+...+.|+++++.
T Consensus 123 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 123 ANGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 4566777765 4445667799999998764310 0 0000 0000 00 0 1124446788899888
Q ss_pred c--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHH
Q 013813 224 L--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 301 (436)
Q Consensus 224 ~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda 301 (436)
+ ++.+.+-..-+++.+++..+++.+++.++.+| ++... .-+++..+++++.+++||.+.=.+.+..++
T Consensus 203 ~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~i-------EeP~~---~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~ 272 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWL-------EDPTP---AENQEAFRLIRQHTTTPLAVGEVFNSIWDC 272 (404)
T ss_pred hCCCceEEEECCCCCCHHHHHHHHHhccccCCcEE-------ECCCC---ccCHHHHHHHHhcCCCCEEeCcCccCHHHH
Confidence 7 46677776667899999999999999988776 22111 346888999999999999998889999999
Q ss_pred HHHHHhcCcceeee
Q 013813 302 QKCLEETGCEGVLS 315 (436)
Q Consensus 302 ~~~l~~tGaDgVmI 315 (436)
+++++...+|.|.+
T Consensus 273 ~~li~~~a~dii~~ 286 (404)
T PRK15072 273 KQLIEEQLIDYIRT 286 (404)
T ss_pred HHHHHcCCCCEEec
Confidence 99999877888875
No 282
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.26 E-value=0.091 Score=52.90 Aligned_cols=132 Identities=21% Similarity=0.197 Sum_probs=88.7
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. .-|-+.....+.=.++++.+++.+ .+||.+.+- +.+..+++++
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~G----------ttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~eai~l 91 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLG----------TTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAEAIEL 91 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHHHHHH
Confidence 66777777764 466999999883 345555556777777888777777 378888842 2346899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHhcCccee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~tGaDgV 313 (436)
++.+++.|+|+|.+..-.... .+..--++.++.|.+.+++||| +| |--.+++.+.++-+...+-||
T Consensus 92 ak~a~~~Gad~il~v~PyY~k---~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgi 163 (299)
T COG0329 92 AKHAEKLGADGILVVPPYYNK---PSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGV 163 (299)
T ss_pred HHHHHhcCCCEEEEeCCCCcC---CChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEE
Confidence 999999999999886543221 0012235667888888888865 55 545667777666543233333
No 283
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=96.25 E-value=0.19 Score=49.74 Aligned_cols=151 Identities=21% Similarity=0.235 Sum_probs=91.4
Q ss_pred CCCCCcHHHHHHHHHhCCCeEEeCcccch---hhccChhh-hh------hhhhccCCCCCEEE---EecCC-CHHHHHHH
Q 013813 110 MVDNSELPFRMLCRRYGAEAAYTPMLHSR---IFTESEKY-RN------EEFATCKEDRPLFV---QFCAN-DPEILLNA 175 (436)
Q Consensus 110 M~gvtd~~fR~l~~~~Ga~l~~Temisa~---~l~~~~~~-~~------~~~~~~~~e~pliv---QL~g~-d~e~~~~A 175 (436)
|.+.=|.++-+++.+.|.+++++.--... ++.....- .. ..+.. -..+|++| =+.+. ++++..+.
T Consensus 19 m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~r-g~~~~~vv~DmPf~sy~~~e~a~~n 97 (263)
T TIGR00222 19 AITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKR-GAPNCLIVTDLPFMSYATPEQALKN 97 (263)
T ss_pred EEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHh-hCCCceEEeCCCcCCCCCHHHHHHH
Confidence 77888999999999999998876511110 11111000 00 11111 22355554 12222 46666655
Q ss_pred H-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE-------EEecc-------CCCh-
Q 013813 176 A-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS-------CKIRV-------FPNL- 238 (436)
Q Consensus 176 A-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs-------VKiRl-------g~~~- 238 (436)
| ++++ .|+++|.|--| ..+.+.++.+. ..++||. ...|. |.+.
T Consensus 98 a~rl~~eaGa~aVkiEgg-------------------~~~~~~i~~l~-~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~ 157 (263)
T TIGR00222 98 AARVMQETGANAVKLEGG-------------------EWLVETVQMLT-ERGVPVVGHLGLTPQSVNILGGYKVQGKDEE 157 (263)
T ss_pred HHHHHHHhCCeEEEEcCc-------------------HhHHHHHHHHH-HCCCCEEEecCCCceeEeecCCeeecCCCHH
Confidence 5 5666 58999999732 22345555554 3367777 32332 2232
Q ss_pred --hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc
Q 013813 239 --QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 293 (436)
Q Consensus 239 --~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG 293 (436)
+++++-|+.++++|++.|.+-+-. -+..++|.+.+++|+|+.|
T Consensus 158 ~a~~~i~~A~a~e~AGA~~ivlE~vp------------~~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 158 AAKKLLEDALALEEAGAQLLVLECVP------------VELAAKITEALAIPVIGIG 202 (263)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCc------------HHHHHHHHHhCCCCEEeec
Confidence 355677888999999999886442 2678899999999999877
No 284
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.24 E-value=0.023 Score=59.74 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=57.1
Q ss_pred HHHHHHcCccEEEeccCcccccC-CCCCccCHHHHHHHHhhC---------CCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNAL---------RIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~-~~~g~ad~~~i~~ik~~~---------~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+..+.+.|+|+|.+-.-...... ....+.-|+.++++++.+ ++||++.||| +.+++.++++ +|++||.
T Consensus 313 l~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~-aGa~GVA 390 (437)
T PRK12290 313 LLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQ-CGVSSLA 390 (437)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHH-cCCCEEE
Confidence 44566789999988654332211 122245678787776654 7999999999 5899999997 5999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+-|+++..++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999986555
No 285
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=96.24 E-value=0.18 Score=48.84 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLE 249 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le 249 (436)
...+|...++.|+|.||+- +-..|..|+ ..|..+.+|++.+.. ..|||.-+--.+ ........+....
T Consensus 9 ~~~EA~~a~~~gaDiID~K------~P~~GaLGA---~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~~aa~~~a 77 (235)
T PF04476_consen 9 NVEEAEEALAGGADIIDLK------NPAEGALGA---LFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTASLAALGAA 77 (235)
T ss_pred CHHHHHHHHhCCCCEEEcc------CCCCCCCCC---CCHHHHHHHHHHcCC--CCceEEEecCCCCCchHHHHHHHHHH
Confidence 3556666778899999984 233455554 357777777776543 379999853222 2222222334455
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHH----HHhhC-CCcEEEcc--CC-----CCHHHHHHHHHhcCcceeeeeh
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKA----VKNAL-RIPVLANG--NV-----RHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~----ik~~~-~iPVianG--GI-----~s~eda~~~l~~tGaDgVmIGR 317 (436)
..|+|+|-|----.. .. ....+.++. +++.- +..+++.+ +- -++-++.+.....|+++||+-+
T Consensus 78 ~~GvdyvKvGl~g~~---~~--~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 78 ATGVDYVKVGLFGCK---DY--DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDT 152 (235)
T ss_pred hcCCCEEEEecCCCC---CH--HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEec
Confidence 689999977311000 00 011233333 33321 34566555 21 1355666777777999999998
Q ss_pred HHhhCCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCC
Q 013813 318 SLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP 364 (436)
Q Consensus 318 gal~nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~ 364 (436)
+.=....+|.-+. .+.+.+|.+.+..++
T Consensus 153 a~Kdg~~L~d~~~-------------------~~~L~~Fv~~ar~~g 180 (235)
T PF04476_consen 153 ADKDGGSLFDHLS-------------------EEELAEFVAQARAHG 180 (235)
T ss_pred ccCCCCchhhcCC-------------------HHHHHHHHHHHHHcc
Confidence 7766666765332 235777777777665
No 286
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.20 E-value=0.017 Score=59.41 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhccc-------CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh
Q 013813 211 PLVKSLVEKLALNL-------NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 283 (436)
Q Consensus 211 ~~v~eIv~av~~~~-------~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~ 283 (436)
+.-.+.++.+++.. ...+.|-..++.. ++..+.++.|.++|+|.|+|..-.... ..-.+.++.+|+
T Consensus 73 e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~-~~~~er~~~L~~agvD~ivID~a~g~s------~~~~~~ik~ik~ 145 (352)
T PF00478_consen 73 EEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTR-DDDFERAEALVEAGVDVIVIDSAHGHS------EHVIDMIKKIKK 145 (352)
T ss_dssp HHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESS-TCHHHHHHHHHHTT-SEEEEE-SSTTS------HHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccccccceEEEEecCC-HHHHHHHHHHHHcCCCEEEccccCccH------HHHHHHHHHHHH
Confidence 44455555555421 2333344334433 344677888899999999995332211 122477889988
Q ss_pred hCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 284 ALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 284 ~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
... +||| .|+|-|.+.++.+++. |||+|-+|=|
T Consensus 146 ~~~~~~vi-aGNV~T~e~a~~L~~a-Gad~vkVGiG 179 (352)
T PF00478_consen 146 KFPDVPVI-AGNVVTYEGAKDLIDA-GADAVKVGIG 179 (352)
T ss_dssp HSTTSEEE-EEEE-SHHHHHHHHHT-T-SEEEESSS
T ss_pred hCCCceEE-ecccCCHHHHHHHHHc-CCCEEEEecc
Confidence 864 7777 6889999999998885 9999998844
No 287
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.19 E-value=0.27 Score=47.70 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=88.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCc--cEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV--PVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~i--PVsVKiRl 234 (436)
+.|+=|.|+..+|+.+.+. .++.|+|.|-+|.=.. ..+.++++.+++. ++ -..+-+..
T Consensus 68 ~~~~DvHLMv~~P~~~i~~--~~~aGad~It~H~Ea~-----------------~~~~~~l~~Ik~~-g~~~kaGlalnP 127 (228)
T PRK08091 68 HCFKDVHLMVRDQFEVAKA--CVAAGADIVTLQVEQT-----------------HDLALTIEWLAKQ-KTTVLIGLCLCP 127 (228)
T ss_pred CCCEEEEeccCCHHHHHHH--HHHhCCCEEEEcccCc-----------------ccHHHHHHHHHHC-CCCceEEEEECC
Confidence 6788999999999998754 3567999999996310 1245666777654 45 33444334
Q ss_pred CCChhhHHHHHHHHHHcCccEEEe---ccCcccccCCCCCccCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHH
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~ 306 (436)
+...+....++. . +|.|.| ..+...|... +.-++-|+++++. .++.|-.-|||+ .+.+.++.+
T Consensus 128 ~Tp~~~i~~~l~---~--vD~VLiMtV~PGfgGQ~f~---~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~ 198 (228)
T PRK08091 128 ETPISLLEPYLD---Q--IDLIQILTLDPRTGTKAPS---DLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQ 198 (228)
T ss_pred CCCHHHHHHHHh---h--cCEEEEEEECCCCCCcccc---HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHH
Confidence 434444333332 2 677755 3333332211 2234555555543 246789999998 688888887
Q ss_pred hcCcceeeeehHHhhCCc
Q 013813 307 ETGCEGVLSAESLLENPA 324 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~ 324 (436)
. |||.+++|+++..++.
T Consensus 199 a-GaD~~V~GSalF~~~d 215 (228)
T PRK08091 199 H-QIDWVVSGSALFSQGE 215 (228)
T ss_pred C-CCCEEEEChhhhCCCC
Confidence 6 9999999999877665
No 288
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=96.18 E-value=0.2 Score=51.45 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=93.5
Q ss_pred CCEEEEecCCCHHHHH-HHHHHHcCC-CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEec
Q 013813 158 RPLFVQFCANDPEILL-NAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIR 233 (436)
Q Consensus 158 ~plivQL~g~d~e~~~-~AA~~v~~g-~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiR 233 (436)
.|+...+...+++++. ++.+.++.| |..+-+-.|- .+++.-.+.|+++++.++ +.+.+-..
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDaN 196 (365)
T cd03318 132 LPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDVN 196 (365)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 3454445445555444 445666778 9999887541 123444566677777663 45555555
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
-+++.+++.++++.+++.|+.+| ++... .-+++..+++++..++||.+.=.+.+.+++.++++...+|.+
T Consensus 197 ~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~ 266 (365)
T cd03318 197 QAWDESTAIRALPRLEAAGVELI-------EQPVP---RENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVF 266 (365)
T ss_pred CCCCHHHHHHHHHHHHhcCccee-------eCCCC---cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeE
Confidence 57888999999999999987665 22111 236888899999999999988789999999999998678887
Q ss_pred ee
Q 013813 314 LS 315 (436)
Q Consensus 314 mI 315 (436)
++
T Consensus 267 ~~ 268 (365)
T cd03318 267 SL 268 (365)
T ss_pred EE
Confidence 54
No 289
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.18 E-value=0.14 Score=51.14 Aligned_cols=110 Identities=20% Similarity=0.254 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHhcccCccEEEEecc--CC-C--------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHH
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRV--FP-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 276 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRl--g~-~--------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~ 276 (436)
++.+..+++++.... .+++|-.=+.. |. + ..++.+..+.+++.|+|.+.|.-.|..+.|.. ...|++
T Consensus 112 eNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~-p~l~~~ 189 (283)
T PRK07998 112 ENIAFTKEAVDFAKS-YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDI-PRIDIP 189 (283)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCC-CCcCHH
Confidence 355666677766553 57776544321 11 0 12445555666789999997754444443332 347899
Q ss_pred HHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHHh
Q 013813 277 AIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 277 ~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRgal 320 (436)
.+++|++.+++|++.-||=..+ ++++++++. |+..|=|++.+.
T Consensus 190 ~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi~Tel~ 233 (283)
T PRK07998 190 LLKRIAEVSPVPLVIHGGSGIPPEILRSFVNY-KVAKVNIASDLR 233 (283)
T ss_pred HHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHc-CCcEEEECHHHH
Confidence 9999999999999988876655 667778875 999999998753
No 290
>PLN02535 glycolate oxidase
Probab=96.17 E-value=0.052 Score=56.10 Aligned_cols=43 Identities=26% Similarity=0.521 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.++.+++..++||++ .||.+.+|++.+.+. |+|+|.+.
T Consensus 209 ~~tW~~i~~lr~~~~~Pviv-KgV~~~~dA~~a~~~-GvD~I~vs 251 (364)
T PLN02535 209 SLSWKDIEWLRSITNLPILI-KGVLTREDAIKAVEV-GVAGIIVS 251 (364)
T ss_pred CCCHHHHHHHHhccCCCEEE-ecCCCHHHHHHHHhc-CCCEEEEe
Confidence 46899999999999999775 567899999998886 99999774
No 291
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.16 E-value=0.17 Score=50.94 Aligned_cols=208 Identities=12% Similarity=0.093 Sum_probs=116.9
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEe-Cc-ccch--hhccC-----hhhhhh-hhhccCCCCCEEEEe-
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYT-PM-LHSR--IFTES-----EKYRNE-EFATCKEDRPLFVQF- 164 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~T-em-isa~--~l~~~-----~~~~~~-~~~~~~~e~plivQL- 164 (436)
|-+.+-.+..+++| ++-|..=-+++.+.|-+.+|| -. +++. ++-.. ...... .--....+.|+++=+
T Consensus 8 ~r~l~~~~~~l~~p--~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d 85 (294)
T TIGR02319 8 FRELMNAPEILVVP--SAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDAD 85 (294)
T ss_pred HHHHhcCCCcEEee--cCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECC
Confidence 44444444455544 455554446778889988885 32 2211 22111 000000 000223468999876
Q ss_pred --cCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc----CC
Q 013813 165 --CANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV----FP 236 (436)
Q Consensus 165 --~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl----g~ 236 (436)
+|+.++ ..+.++.+ +.|+.+|.|--..- ..+.|.+++.-+-..+...+=|++++++. +.++.|=-|. ..
T Consensus 86 tGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~--pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~ 162 (294)
T TIGR02319 86 AGYGNAMS-VWRATREFERVGIVGYHLEDQVN--PKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESF 162 (294)
T ss_pred CCCCCcHH-HHHHHHHHHHcCCeEEEEECCCC--ccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccC
Confidence 345555 66777654 56999999975421 11223334432333444444444444432 3456665555 24
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcE---EEccCCCCHHHHHHHHHhcCccee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV---LANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPV---ianGGI~s~eda~~~l~~tGaDgV 313 (436)
..+++++=++...++|+|.|-+++-. +.+.++++.+.++.|+ +..||-.-.-.+.++-+ -|+..|
T Consensus 163 g~deaI~Ra~aY~eAGAD~ifi~~~~-----------~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~-lG~~~v 230 (294)
T TIGR02319 163 GLDEAIRRSREYVAAGADCIFLEAML-----------DVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELES-IGYNLA 230 (294)
T ss_pred CHHHHHHHHHHHHHhCCCEEEecCCC-----------CHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHH-cCCcEE
Confidence 56788888999999999999998631 2466888888888787 34443322223444444 499999
Q ss_pred eeehHHh
Q 013813 314 LSAESLL 320 (436)
Q Consensus 314 mIGRgal 320 (436)
..|-.++
T Consensus 231 ~~~~~~~ 237 (294)
T TIGR02319 231 IYPLSGW 237 (294)
T ss_pred EEcHHHH
Confidence 9985543
No 292
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.14 E-value=0.066 Score=52.27 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=79.5
Q ss_pred HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHHHcCcc
Q 013813 177 RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCS 254 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG~d 254 (436)
++++ .|||.|=+--.+-.. .. |+-...+-..+.+.+.++.|...+.+||++.+..|. +.++..+.++.+.++|++
T Consensus 23 ~~~e~~G~~ai~~s~~~~~~--s~-G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 23 RLAERAGFKAIYTSGAGVAA--SL-GLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHHHHcCCCEEEeccHHHHH--hc-CCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 4444 388888775321111 11 233333445677888888898889999999998865 445677788999999999
Q ss_pred EEEeccCcccccCCCCC---ccC----HHHHHHHHhhC----CCcEEEccC---C--CCHHHHHHHH---HhcCcceeee
Q 013813 255 LLAVHGRTRDEKDGKKF---RAD----WNAIKAVKNAL----RIPVLANGN---V--RHMEDVQKCL---EETGCEGVLS 315 (436)
Q Consensus 255 ~I~VHgRt~~~~~~~~g---~ad----~~~i~~ik~~~----~iPVianGG---I--~s~eda~~~l---~~tGaDgVmI 315 (436)
+|.+-+.....+.+..+ ... .+.|+.+++.. +++|++-=+ + .+.+++.+.. .+.|||+|++
T Consensus 100 gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v 179 (243)
T cd00377 100 GIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFV 179 (243)
T ss_pred EEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 99994443221111100 111 23333344332 455555511 2 3455554332 2349999998
Q ss_pred e
Q 013813 316 A 316 (436)
Q Consensus 316 G 316 (436)
-
T Consensus 180 ~ 180 (243)
T cd00377 180 E 180 (243)
T ss_pred C
Confidence 5
No 293
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.12 E-value=0.061 Score=52.44 Aligned_cols=144 Identities=20% Similarity=0.227 Sum_probs=91.1
Q ss_pred CCCCEEEEe---cCCCHHHHHHHHHHH-cCCCcEEEEecC-CCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEE
Q 013813 156 EDRPLFVQF---CANDPEILLNAARRV-EPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVS 229 (436)
Q Consensus 156 ~e~plivQL---~g~d~e~~~~AA~~v-~~g~D~IdLN~G-CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVs 229 (436)
.+.|+++=+ +|+++..+.+.++.+ +.|+.+|.|.-. |-. -|..++ .++...+=|++++++. +..+.
T Consensus 68 ~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~-------~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~ 139 (238)
T PF13714_consen 68 VSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGH-------GGKQLV-SPEEMVAKIRAAVDARRDPDFV 139 (238)
T ss_dssp SSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTT-------STT-B---HHHHHHHHHHHHHHHSSTTSE
T ss_pred hcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCC-------CCCcee-CHHHHHHHHHHHHHhccCCeEE
Confidence 368999887 366699999999765 569999999876 431 234455 4554444444444332 22244
Q ss_pred EEeccC------CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHH
Q 013813 230 CKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 303 (436)
Q Consensus 230 VKiRlg------~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~ 303 (436)
|=-|.. ...+++++=++...++|+|.|-+++... -+.++++.+.++.|+..+.+ ...-++++
T Consensus 140 I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~-----------~~~i~~~~~~~~~Pl~v~~~-~~~~~~~e 207 (238)
T PF13714_consen 140 IIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQS-----------EEEIERIVKAVDGPLNVNPG-PGTLSAEE 207 (238)
T ss_dssp EEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSS-----------HHHHHHHHHHHSSEEEEETT-SSSS-HHH
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC-----------HHHHHHHHHhcCCCEEEEcC-CCCCCHHH
Confidence 444442 2456778888889999999999987632 24578888888999877664 22245555
Q ss_pred HHHhcCcceeeeehHHh
Q 013813 304 CLEETGCEGVLSAESLL 320 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal 320 (436)
+-+. |+..|.+|-.++
T Consensus 208 L~~l-Gv~~v~~~~~~~ 223 (238)
T PF13714_consen 208 LAEL-GVKRVSYGNSLL 223 (238)
T ss_dssp HHHT-TESEEEETSHHH
T ss_pred HHHC-CCcEEEEcHHHH
Confidence 5554 999999886543
No 294
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=96.12 E-value=0.062 Score=54.99 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=75.8
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-ccCcccc-cCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDE-KDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-HgRt~~~-~~~~~g~ad~~~i~ 279 (436)
-||..+++.+++.++- .+++||.+|--...+.++....++.+...|-..+++ |..++.- .+. ....|+..+.
T Consensus 182 IgAr~~~N~~LL~~va-----~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~-~~~ldl~ai~ 255 (335)
T PRK08673 182 IGARNMQNFDLLKEVG-----KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETAT-RNTLDLSAVP 255 (335)
T ss_pred ECcccccCHHHHHHHH-----cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcC-hhhhhHHHHH
Confidence 4788889988877664 458999999666667888888888999999866554 5323221 111 2257899999
Q ss_pred HHHhhCCCcEEEc----cCCCC--HHHHHHHHHhcCcceeeeeh
Q 013813 280 AVKNALRIPVLAN----GNVRH--MEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 280 ~ik~~~~iPVian----GGI~s--~eda~~~l~~tGaDgVmIGR 317 (436)
.+++..++||++. +|.+. +..+...+. .||||+||=.
T Consensus 256 ~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA-~GAdGliIE~ 298 (335)
T PRK08673 256 VIKKLTHLPVIVDPSHATGKRDLVEPLALAAVA-AGADGLIVEV 298 (335)
T ss_pred HHHHhcCCCEEEeCCCCCccccchHHHHHHHHH-hCCCEEEEEe
Confidence 9999889999774 33321 134455555 4999999873
No 295
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.11 E-value=0.11 Score=52.51 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=84.4
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. +..|+++|=+| |..|-+..-..+.-.++++.+.+.+ ++||.+-+-. .+.++++++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~----------GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~~ 95 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTM----------GTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIAR 95 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC----------cccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHHH
Confidence 56677777754 46799999998 3456666666777777877776655 4899988432 456899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEE------ccCCCCHHHHHHHHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLA------NGNVRHMEDVQKCLE 306 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVia------nGGI~s~eda~~~l~ 306 (436)
++.+++.|+|++.+..-... ..+...-+++.+.|.+.+ ++||+. .|---+++.+.++.+
T Consensus 96 a~~A~~~Gad~vlv~~P~y~---~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 96 TRALLDLGADGTMLGRPMWL---PLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred HHHHHHhCCCEEEECCCcCC---CCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence 99999999999988643211 011122356677888887 588763 233445666666653
No 296
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=96.10 E-value=0.055 Score=56.32 Aligned_cols=43 Identities=19% Similarity=0.561 Sum_probs=38.4
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.++.+++..++||+.- ||.+.+|++.+++. |||+|.|.
T Consensus 239 ~~tW~~i~~lr~~~~~pvivK-gV~~~~dA~~a~~~-G~d~I~vs 281 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVLK-GILHPDDARRAVEA-GVDGVVVS 281 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-cCCCHHHHHHHHHC-CCCEEEEc
Confidence 468999999999999998876 77899999999986 99999976
No 297
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.10 E-value=0.14 Score=46.97 Aligned_cols=129 Identities=17% Similarity=0.145 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC---ChhhHHH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP---NLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~---~~~d~~~ 243 (436)
|.+.+.+.++.+ +.|+++|.++. +.++.+.+.+... ++||.+++-.+. ..+++.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~~~~~~~~~ 69 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGS-DVPVIVVVGFPTGLTTTEVKVA 69 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCC-CCeEEEEecCCCCCCcHHHHHH
Confidence 788888888755 56899999993 3333343433221 489999965432 1578889
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh--CCCcEEE-c--cCCCCHHHHHHH---HHhcCcceeee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLA-N--GNVRHMEDVQKC---LEETGCEGVLS 315 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~--~~iPVia-n--GGI~s~eda~~~---l~~tGaDgVmI 315 (436)
.++.+.++|+|++.++.-..... ......-.+.++++++. .++||+. | +...+.+...++ +...|+|+|-.
T Consensus 70 ~a~~a~~~Gad~i~v~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 70 EVEEAIDLGADEIDVVINIGSLK-EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HHHHHHHcCCCEEEEeccHHHHh-CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 99999999999998864321100 00001225667788887 4888763 2 222256666654 34468999866
Q ss_pred ehH
Q 013813 316 AES 318 (436)
Q Consensus 316 GRg 318 (436)
..+
T Consensus 149 ~~~ 151 (201)
T cd00945 149 STG 151 (201)
T ss_pred CCC
Confidence 544
No 298
>PRK14057 epimerase; Provisional
Probab=96.08 E-value=0.16 Score=50.05 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=89.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 230 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV 230 (436)
...++.++|...|...+.+-.+.++. |+|.+-+-. | +|+- .+| |+. ++++++ ++|+.|
T Consensus 18 ~~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNi-----tfG------p~~----i~~i~~--~~p~Dv 80 (254)
T PRK14057 18 ASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQF-----TVG------PWA----VGQLPQ--TFIKDV 80 (254)
T ss_pred cCCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcc-----ccC------HHH----HHHhcc--CCCeeE
Confidence 35789999999999999999988865 788765553 2 3331 122 333 344443 345444
Q ss_pred EeccCCChhhHHHHHHHHHHcCccEEEeccCccc------------c----------c----------------------
Q 013813 231 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------E----------K---------------------- 266 (436)
Q Consensus 231 KiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~------------~----------~---------------------- 266 (436)
=+= ..+...+++.+.++|+|.|++|.-... + +
T Consensus 81 HLM----V~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD 156 (254)
T PRK14057 81 HLM----VADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVE 156 (254)
T ss_pred Eee----eCCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCC
Confidence 321 134556677777788888887642100 0 0
Q ss_pred --------CCCCCc----cCHHHHHHHHhh-----CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 267 --------DGKKFR----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 267 --------~~~~g~----ad~~~i~~ik~~-----~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
.++.|. .-++-|+++++. .++.|-.-|||+ .+.+.++.+. |||.+++|+++..++.
T Consensus 157 ~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~a-Gad~~V~GSalF~~~d 229 (254)
T PRK14057 157 VIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQ-GIDRVVSGSALFRDDR 229 (254)
T ss_pred EEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHC-CCCEEEEChHhhCCCC
Confidence 111111 112234444432 246789999997 5788888876 9999999998866544
No 299
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.05 E-value=0.29 Score=49.13 Aligned_cols=161 Identities=16% Similarity=0.267 Sum_probs=92.6
Q ss_pred CCCEEEEecCC------CHHHHHHHHHHHcC--CCc-EEEEecC-CCc----hhhhcCccccccc--------CChHHHH
Q 013813 157 DRPLFVQFCAN------DPEILLNAARRVEP--YCD-YVDINLG-CPQ----RIARRGNYGAFLM--------DNLPLVK 214 (436)
Q Consensus 157 e~plivQL~g~------d~e~~~~AA~~v~~--g~D-~IdLN~G-CP~----~~~~~~~~Gs~Ll--------~~p~~v~ 214 (436)
..|+|+|+.-. ..+.+..+++.+.. ++. -|-||+. |.. ..+.+.||.|-+. .+.+..+
T Consensus 42 ~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~ 121 (288)
T TIGR00167 42 KSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTK 121 (288)
T ss_pred CCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHH
Confidence 56888887543 24445555543322 122 2556652 332 1223344544333 3445566
Q ss_pred HHHHHHhcccCccEEEEecc-C--CC----------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCc-cCHHHHHH
Q 013813 215 SLVEKLALNLNVPVSCKIRV-F--PN----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKA 280 (436)
Q Consensus 215 eIv~av~~~~~iPVsVKiRl-g--~~----------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~-ad~~~i~~ 280 (436)
++++..+ ..++.|-.=+-. | .+ ..++.+..+.+++.|+|.+.|.-.|..+.+..... .||+.+++
T Consensus 122 ~vv~~Ah-~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~ 200 (288)
T TIGR00167 122 KVVERAH-KMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEE 200 (288)
T ss_pred HHHHHHH-HcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHH
Confidence 6666543 235555444321 1 00 11334444445678999997744444433322223 79999999
Q ss_pred HHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 281 VKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 281 ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
|++.+++|++.-||=..+ ++++++++. |+.-|=|++.+
T Consensus 201 I~~~v~vPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi~T~l 239 (288)
T TIGR00167 201 IQKYVNLPLVLHGGSGIPDEEIKKAISL-GVVKVNIDTEL 239 (288)
T ss_pred HHHHhCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEcChHH
Confidence 999999999999986666 577778875 88888777655
No 300
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.024 Score=54.20 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=94.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 156 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
++++++.-+=.-|.-.+. ++. .+.|+|.+-+-+-- +..-+...++..+ ..++-+-+-+=-
T Consensus 55 pd~~IvAD~Kt~D~G~~e--~~ma~~aGAd~~tV~g~A----------------~~~TI~~~i~~A~-~~~~~v~iDl~~ 115 (217)
T COG0269 55 PDKIIVADLKTADAGAIE--ARMAFEAGADWVTVLGAA----------------DDATIKKAIKVAK-EYGKEVQIDLIG 115 (217)
T ss_pred CCCeEEeeeeecchhHHH--HHHHHHcCCCEEEEEecC----------------CHHHHHHHHHHHH-HcCCeEEEEeec
Confidence 677777777666654432 222 45688887776322 3344555555544 345555555422
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEccCCCCHHHHHHHHHhcCcce
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEG 312 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianGGI~s~eda~~~l~~tGaDg 312 (436)
.+ +..+-++.++++|++.+.+|-..-.|..+. ...|+.+..+++..+ ..|-..|||. ++++..+... |++.
T Consensus 116 ~~---~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~--~~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~~~-~~~i 188 (217)
T COG0269 116 VW---DPEQRAKWLKELGVDQVILHRGRDAQAAGK--SWGEDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFKGI-GADI 188 (217)
T ss_pred CC---CHHHHHHHHHHhCCCEEEEEecccHhhcCC--CccHHHHHHHHHhhccCceEEEecCCC-HHHHHHHhcC-CCCE
Confidence 23 444557778889999999995444443332 233677888888765 7999999996 8999998886 8999
Q ss_pred eeeehHHhhCCc
Q 013813 313 VLSAESLLENPA 324 (436)
Q Consensus 313 VmIGRgal~nP~ 324 (436)
|.+||++-.-.+
T Consensus 189 vIvGraIt~a~d 200 (217)
T COG0269 189 VIVGRAITGAKD 200 (217)
T ss_pred EEECchhcCCCC
Confidence 999998865443
No 301
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.02 E-value=0.1 Score=51.74 Aligned_cols=133 Identities=20% Similarity=0.150 Sum_probs=87.9
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+++|=+|- ..|-+..-..+.-.++++.+.+.+ ++||.+-+.. .+.++++++
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~G----------stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~~ 87 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCG----------TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIEL 87 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHHH
Confidence 56667777754 456999999982 244444555666666777666655 4788877432 366899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE------ccCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA------NGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia------nGGI~s~eda~~~l~~tGaDgVm 314 (436)
++.++++|+|+|.+..-... ..+...-+++.+.|.+.+++||+. .|-.-+++.+.++.+...+.|+=
T Consensus 88 a~~a~~~G~d~v~~~~P~~~---~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK 160 (284)
T cd00950 88 TKRAEKAGADAALVVTPYYN---KPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIK 160 (284)
T ss_pred HHHHHHcCCCEEEEcccccC---CCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEE
Confidence 99999999999988643211 111122356678888888899862 46567788888877543444443
No 302
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=96.02 E-value=0.14 Score=51.31 Aligned_cols=133 Identities=16% Similarity=0.127 Sum_probs=88.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++ |..|-+..-..+.-.++++.+.+.+ .+||.+-+ +.+..++++.
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~----------GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~~~t~~ai~~ 91 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAA----------GGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV--GGNTSDAIEI 91 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEC----------CCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--CccHHHHHHH
Confidence 56667777754 46699999988 3345555556666667777665554 47899886 3467899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec--cCCCCHHHHHHHHH-hcCcceeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN--GNVRHMEDVQKCLE-ETGCEGVLS 315 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an--GGI~s~eda~~~l~-~tGaDgVmI 315 (436)
++.++++|+|++.+..-.... .+...-.++.+.|.+.+++||+ +| |---+++.+.++.+ ..++.||=-
T Consensus 92 a~~a~~~Gadav~~~pP~y~~---~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKd 163 (296)
T TIGR03249 92 ARLAEKAGADGYLLLPPYLIN---GEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKD 163 (296)
T ss_pred HHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEe
Confidence 999999999999886432211 1111225667888888889965 43 32347888888775 334444443
No 303
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.01 E-value=0.069 Score=54.94 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=74.5
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-ccCcccc--cCCCCCccCHHHHH
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDE--KDGKKFRADWNAIK 279 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-HgRt~~~--~~~~~g~ad~~~i~ 279 (436)
||..+++.+++.++ . .+++||.+|--...+.++....++.+.+.|...|++ |..++.- .|. ....||..+.
T Consensus 191 ga~~~~n~~LL~~v----a-~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~-~~~~dl~ai~ 264 (352)
T PRK13396 191 GARNMQNFSLLKKV----G-AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYT-RNTLDLSVIP 264 (352)
T ss_pred CcccccCHHHHHHH----H-ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCC-CCCcCHHHHH
Confidence 67788887765444 3 458999999766668889888899999999865654 5433221 122 2368999999
Q ss_pred HHHhhCCCcEEEcc----CCCC--HHHHHHHHHhcCcceeeee
Q 013813 280 AVKNALRIPVLANG----NVRH--MEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 280 ~ik~~~~iPVianG----GI~s--~eda~~~l~~tGaDgVmIG 316 (436)
.+++..++|||+.- |.++ ..-+...+. .||||+||=
T Consensus 265 ~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva-~GAdGliIE 306 (352)
T PRK13396 265 VLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIA-AGTDSLMIE 306 (352)
T ss_pred HHHHhhCCCEEECCcccCCcHHHHHHHHHHHHh-hCCCeEEEE
Confidence 99998899998763 2222 233344454 499999986
No 304
>PRK02227 hypothetical protein; Provisional
Probab=95.98 E-value=0.28 Score=47.73 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHH
Q 013813 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLE 249 (436)
Q Consensus 171 ~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le 249 (436)
...+|...++.|+|.||+- +-..|..| .+.|..+++|++.+... .|||..+--.+ .......-+..+.
T Consensus 9 ~~eEA~~Al~~GaDiIDvK------~P~~GaLG---A~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~~~aa~~~a 77 (238)
T PRK02227 9 NLEEALEALAGGADIIDVK------NPKEGSLG---ANFPWVIREIVAAVPGR--KPVSATIGDVPYKPGTISLAALGAA 77 (238)
T ss_pred CHHHHHHHHhcCCCEEEcc------CCCCCCCC---CCCHHHHHHHHHHhCCC--CCceeeccCCCCCchHHHHHHHHHH
Confidence 3556666678899999984 23344444 34578888888887644 69999843212 2233333445566
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHHH----Hhh-CCCcEEEcc--C---CC--CHHHHHHHHHhcCcceeeeeh
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV----KNA-LRIPVLANG--N---VR--HMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~i----k~~-~~iPVianG--G---I~--s~eda~~~l~~tGaDgVmIGR 317 (436)
..|+|+|-|- ..... .. ...++.++.+ +.. .+..|++.+ + +. ++.++.......|++++|+=+
T Consensus 78 ~~GvDyVKvG-l~~~~--~~--~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDT 152 (238)
T PRK02227 78 ATGADYVKVG-LYGGK--TA--EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDT 152 (238)
T ss_pred hhCCCEEEEc-CCCCC--cH--HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEec
Confidence 7999999772 21110 00 1112333333 222 245666555 1 11 456677777777999999976
Q ss_pred HHhhCCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCC
Q 013813 318 SLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP 364 (436)
Q Consensus 318 gal~nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~ 364 (436)
+.=..-.+|.-+. .+.+.+|.+.+..++
T Consensus 153 a~Kdg~~Lfd~l~-------------------~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 153 AIKDGKSLFDHMD-------------------EEELAEFVAEARSHG 180 (238)
T ss_pred ccCCCcchHhhCC-------------------HHHHHHHHHHHHHcc
Confidence 5544444443221 235778888777766
No 305
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.97 E-value=0.16 Score=51.07 Aligned_cols=123 Identities=16% Similarity=0.087 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++.+ ..|+|+|=+|. ..|-+..-..+.=.++++.+.+.+ ++||.+-+- .+..+++++
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~G----------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~~i~~ 93 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAG----------GTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQAIEY 93 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHHHHHH
Confidence 556666666654 56999999883 345555556666667777666555 589998863 377899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-cC-CCCHHHHHHHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-GN-VRHMEDVQKCL 305 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-GG-I~s~eda~~~l 305 (436)
++.++++|+|++.+..-.... .+...-.++.+.+.+.+++||+ +| .| --+++.+.++.
T Consensus 94 ~~~a~~~Gadav~~~pP~y~~---~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 94 AQAAERAGADGILLLPPYLTE---APQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999885432110 0001224667788888889965 33 22 33677777766
No 306
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.95 E-value=0.054 Score=55.14 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHc--CccEEEe---ccCcccccCCCCCccCHHHHHHHHhh
Q 013813 210 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA--GCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNA 284 (436)
Q Consensus 210 p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~a--G~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~~ 284 (436)
++.-.+.++.+......-+.| ..|.. ++..+.++.|.++ |+|.|+| ||-.. .-.+.|+.+++.
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~-~~d~er~~~L~~a~~~~d~iviD~AhGhs~---------~~i~~ik~ir~~ 147 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSS-DNDLEKMTSILEAVPQLKFICLDVANGYSE---------HFVEFVKLVREA 147 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHH---------HHHHHHHHHHhh
Confidence 444444454443333333333 23333 3334566677776 5999988 33321 235788999988
Q ss_pred CCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 285 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 285 ~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..-+.+..|+|-|+++++.+++. |||+|.+|
T Consensus 148 ~p~~~viaGNV~T~e~a~~Li~a-GAD~ikVg 178 (343)
T TIGR01305 148 FPEHTIMAGNVVTGEMVEELILS-GADIVKVG 178 (343)
T ss_pred CCCCeEEEecccCHHHHHHHHHc-CCCEEEEc
Confidence 76678889999999999999986 99999877
No 307
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.94 E-value=0.11 Score=50.31 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=47.5
Q ss_pred CEEEEecCCCHHHHHHHHHHHc---CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEecc
Q 013813 159 PLFVQFCANDPEILLNAARRVE---PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV 234 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~---~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRl 234 (436)
+|++-+ |...+.++.+.++ ...+.|+++.+.=. .+| .++++++++. ..+++.+| +
T Consensus 4 ~lilAl---D~~~~~~~l~~~~~~~~~~~~ikvg~~~f~------~~G----------~~~i~~l~~~~~~i~~D~K--l 62 (230)
T PRK00230 4 RLIVAL---DFPSKEEALAFLDQLDPAVLFVKVGMELFT------AGG----------PQFVRELKQRGFKVFLDLK--L 62 (230)
T ss_pred CeEEEc---CCCCHHHHHHHHHhcCCcccEEEEcHHHHH------hcC----------HHHHHHHHhcCCCEEEEee--h
Confidence 455555 4444455555554 34678888853211 122 2446666654 45666677 4
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccC
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGR 261 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgR 261 (436)
.+-.......++.+.++|+++++||+-
T Consensus 63 ~Di~~t~~~~i~~~~~~gad~itvH~~ 89 (230)
T PRK00230 63 HDIPNTVAKAVRALAKLGVDMVNVHAS 89 (230)
T ss_pred hhccccHHHHHHHHHHcCCCEEEEccc
Confidence 322223445677788999999999963
No 308
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.90 E-value=0.46 Score=48.05 Aligned_cols=148 Identities=19% Similarity=0.290 Sum_probs=81.2
Q ss_pred CCCCEEEEecCCC-----HHHHHHHHHHHcCCC--cEEEEecC-CCc----hhhhcCccccccc--------CChHHHHH
Q 013813 156 EDRPLFVQFCAND-----PEILLNAARRVEPYC--DYVDINLG-CPQ----RIARRGNYGAFLM--------DNLPLVKS 215 (436)
Q Consensus 156 ~e~plivQL~g~d-----~e~~~~AA~~v~~g~--D~IdLN~G-CP~----~~~~~~~~Gs~Ll--------~~p~~v~e 215 (436)
...|+|+|+.-+. .+.+...++.+...+ --|-||+. |.. ..+.+.||.|-+. .+-+..++
T Consensus 40 ~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~ 119 (307)
T PRK05835 40 ENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSK 119 (307)
T ss_pred HCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Confidence 3578888875432 333444444332222 23555542 222 1222344544333 34455566
Q ss_pred HHHHHhcccCccEEEEec-cC-C-C----------hhhHHHHHHHHHHcCccEEEeccCcccccCC--CCCccCHHHHHH
Q 013813 216 LVEKLALNLNVPVSCKIR-VF-P-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRADWNAIKA 280 (436)
Q Consensus 216 Iv~av~~~~~iPVsVKiR-lg-~-~----------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~--~~g~ad~~~i~~ 280 (436)
+++..+ ..++.|-.=+- ++ . + ..++.+..+.+++.|+|.+.|.-.|..+.+. .....||+.+++
T Consensus 120 vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~ 198 (307)
T PRK05835 120 VVKMAH-NAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQE 198 (307)
T ss_pred HHHHHH-HcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHH
Confidence 666544 33555544331 11 0 0 1234444555668899999875444444333 222579999999
Q ss_pred HHhhCCCcEEEccCCCCHHHHHHH
Q 013813 281 VKNALRIPVLANGNVRHMEDVQKC 304 (436)
Q Consensus 281 ik~~~~iPVianGGI~s~eda~~~ 304 (436)
|++.+++|++.-||=..+++..+.
T Consensus 199 I~~~~~iPLVLHGgSGip~e~~~~ 222 (307)
T PRK05835 199 VKRLTNIPLVLHGASAIPDDVRKS 222 (307)
T ss_pred HHHHhCCCEEEeCCCCCchHHhhh
Confidence 999999999999988877754433
No 309
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.87 E-value=0.12 Score=51.03 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=78.4
Q ss_pred CCEEEEecCCCHH--------HHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccE
Q 013813 158 RPLFVQFCANDPE--------ILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPV 228 (436)
Q Consensus 158 ~plivQL~g~d~e--------~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPV 228 (436)
.|+|..+-..+|. +..+.|+.. +.|+++|-++. ....||+. .+.++++++.+++||
T Consensus 50 ~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt-------e~~~f~g~--------~~~l~~v~~~v~iPv 114 (260)
T PRK00278 50 PAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT-------DERFFQGS--------LEYLRAARAAVSLPV 114 (260)
T ss_pred CeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec-------ccccCCCC--------HHHHHHHHHhcCCCE
Confidence 5566666443332 235555544 45899996652 22334444 355666777789999
Q ss_pred EEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh
Q 013813 229 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 307 (436)
Q Consensus 229 sVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~~~iPVianGGI~s~eda~~~l~~ 307 (436)
.+|-- .-+.. -+..+.++|+|.|++.+.... ...+ +++... +..++.+++ .+.+.++++++.+.
T Consensus 115 l~kdf----i~~~~-qi~~a~~~GAD~VlLi~~~l~-------~~~l~~li~~a-~~lGl~~lv--evh~~~E~~~A~~~ 179 (260)
T PRK00278 115 LRKDF----IIDPY-QIYEARAAGADAILLIVAALD-------DEQLKELLDYA-HSLGLDVLV--EVHDEEELERALKL 179 (260)
T ss_pred Eeeee----cCCHH-HHHHHHHcCCCEEEEEeccCC-------HHHHHHHHHHH-HHcCCeEEE--EeCCHHHHHHHHHc
Confidence 98731 12333 366778999999999877632 1122 233333 334544443 68899999988875
Q ss_pred cCcceeeee
Q 013813 308 TGCEGVLSA 316 (436)
Q Consensus 308 tGaDgVmIG 316 (436)
|+|.|.++
T Consensus 180 -gadiIgin 187 (260)
T PRK00278 180 -GAPLIGIN 187 (260)
T ss_pred -CCCEEEEC
Confidence 99988764
No 310
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.83 E-value=0.12 Score=49.50 Aligned_cols=150 Identities=11% Similarity=0.083 Sum_probs=89.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchh-----hhc----CcccccccCChHHHHHHHHH-------
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRI-----ARR----GNYGAFLMDNLPLVKSLVEK------- 219 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~-----~~~----~~~Gs~Ll~~p~~v~eIv~a------- 219 (436)
..+++.=|.+.++++..+.++.+.+ |++.||+-+--|... .++ -.-|+...-+++.+...+++
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 4678888999999999999987755 799999997655421 010 11233333334443333322
Q ss_pred ----------HhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCc
Q 013813 220 ----------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 288 (436)
Q Consensus 220 ----------v~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iP 288 (436)
.++ .++|+.- ...+.-+ +..+.++|++.|.+..-... + ...+++.++.-. +++
T Consensus 94 P~~~~~vi~~a~~-~~i~~iP------G~~TptE-i~~a~~~Ga~~vKlFPa~~~------g--g~~~lk~l~~p~p~~~ 157 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLIP------GVSTPSE-LMLGMELGLRTFKFFPAEAS------G--GVKMLKALAGPFPDVR 157 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEeC------CCCCHHH-HHHHHHCCCCEEEEccchhc------c--CHHHHHHHhccCCCCe
Confidence 211 1222211 1122223 45577888888888542110 1 246788887654 799
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
++..|||. .+.+.++++. | +.+.+|.+.|.+...
T Consensus 158 ~~ptGGV~-~~ni~~~l~a-g-~v~~vggs~L~~~~~ 191 (212)
T PRK05718 158 FCPTGGIS-PANYRDYLAL-P-NVLCIGGSWMVPKDA 191 (212)
T ss_pred EEEeCCCC-HHHHHHHHhC-C-CEEEEEChHhCCcch
Confidence 99999997 5999999987 6 445555555555444
No 311
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.83 E-value=0.2 Score=49.95 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=81.2
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+++|=++. ..|-+..-..+.-.++++.+.+.+ ++||.+-+- .+..+++++
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~--~~t~~~i~~ 86 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAG----------GTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG--YGTATAIAY 86 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC--CCHHHHHHH
Confidence 55666666654 456899999883 344444445555566666655544 589999864 377899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc---cCCCCHHHHHHHHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GNVRHMEDVQKCLE 306 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian---GGI~s~eda~~~l~ 306 (436)
++.++++|+|++.+..-.... .+...-.++++.|.+.+++||+.- |---+++.+.++.+
T Consensus 87 a~~a~~~Gad~v~~~pP~y~~---~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 87 AQAAEKAGADGILLLPPYLTE---APQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999885322110 000112466778888888997632 43346777777765
No 312
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.82 E-value=0.08 Score=54.55 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=37.6
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
..+|+.++.+++..++||+.-| |.+++|++.+.+. |+|+|.+
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKg-v~~~~dA~~a~~~-G~d~I~v 248 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKG-IQSPEDADVAINA-GADGIWV 248 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEec-CCCHHHHHHHHHc-CCCEEEE
Confidence 3589999999999999999775 8999999998885 9999988
No 313
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=95.82 E-value=0.087 Score=51.80 Aligned_cols=135 Identities=20% Similarity=0.274 Sum_probs=90.8
Q ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec
Q 013813 154 CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 233 (436)
Q Consensus 154 ~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR 233 (436)
...+.|++.-++ |+.++..+++. +|.|. -|+..|+|.+++.++ ...++||..|=-
T Consensus 106 ~~~Gl~vvtEvm--~~~~~e~~~~y----~Dilq--------------vGARNMQNF~LLke~-----G~~~kPvLLKRg 160 (286)
T COG2876 106 DETGLPVVTEVM--DVRDVEAAAEY----ADILQ--------------VGARNMQNFALLKEV-----GRQNKPVLLKRG 160 (286)
T ss_pred HHcCCeeEEEec--CHHHHHHHHhh----hhHHH--------------hcccchhhhHHHHHh-----cccCCCeEEecC
Confidence 356778888776 34444444432 23332 366678888776654 355899999977
Q ss_pred cCCChhhHHHHHHHHHHcCccEEEeccC---cccccCCCCCccCHHHHHHHHhhCCCcEEEcc----CCCCHH--HHHHH
Q 013813 234 VFPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NVRHME--DVQKC 304 (436)
Q Consensus 234 lg~~~~d~~~~ak~le~aG~d~I~VHgR---t~~~~~~~~g~ad~~~i~~ik~~~~iPVianG----GI~s~e--da~~~ 304 (436)
++-++++.+.-|+.+...|-..|++--| |-+.... ...|+..|..+|+.+++|||++= |=+++- -+...
T Consensus 161 ~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TR--ntLDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA 238 (286)
T COG2876 161 LSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATR--NTLDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAA 238 (286)
T ss_pred ccccHHHHHHHHHHHHhCCCCcEEEEeccccccccccc--ceechHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHH
Confidence 7778899999999999999998888543 3332112 25789999999999999999753 222211 12333
Q ss_pred HHhcCcceeeee
Q 013813 305 LEETGCEGVLSA 316 (436)
Q Consensus 305 l~~tGaDgVmIG 316 (436)
+. .||||+|+=
T Consensus 239 ~A-aGAdglmiE 249 (286)
T COG2876 239 IA-AGADGLMIE 249 (286)
T ss_pred Hh-ccCCeeEEE
Confidence 44 499999985
No 314
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.82 E-value=0.75 Score=45.66 Aligned_cols=187 Identities=15% Similarity=0.107 Sum_probs=105.7
Q ss_pred CCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhh----hhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CCc
Q 013813 113 NSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRN----EEFATCKEDRPLFVQFCANDPEILLNAARRVEP-YCD 184 (436)
Q Consensus 113 vtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~----~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D 184 (436)
+-...|+++++.+ |.+.++.--.+.+...-+...+. ...+......|+++++.+.+.++..+-++.+++ |+|
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-S
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCce
Confidence 3335667766644 77654432222222221222221 112334567899999999999999999988765 899
Q ss_pred EEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc---CCChhhHHHHHHHHHHcC-ccEEEecc
Q 013813 185 YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---FPNLQDTIKYAKMLEDAG-CSLLAVHG 260 (436)
Q Consensus 185 ~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl---g~~~~d~~~~ak~le~aG-~d~I~VHg 260 (436)
+|-+-. |. |. ..+.+.+.+-.+.|.+.+++|+.+=-.. |.+. ..++...+.+.+ +-+|-..
T Consensus 99 ~v~v~~--P~-------~~---~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~l--s~~~l~~L~~~~nv~giK~s- 163 (289)
T PF00701_consen 99 AVLVIP--PY-------YF---KPSQEELIDYFRAIADATDLPIIIYNNPARTGNDL--SPETLARLAKIPNVVGIKDS- 163 (289)
T ss_dssp EEEEEE--ST-------SS---SCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTS--HHHHHHHHHTSTTEEEEEES-
T ss_pred EEEEec--cc-------cc---cchhhHHHHHHHHHHhhcCCCEEEEECCCccccCC--CHHHHHHHhcCCcEEEEEcC-
Confidence 998864 43 11 2246667888888888889999986533 3321 223333333322 2222111
Q ss_pred CcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 261 RTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 261 Rt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
..|+..+.++.+... --.+.+| +-+.+...+.. |++|++.|-+.+ -|+++.++-
T Consensus 164 -----------~~~~~~~~~~~~~~~~~~~v~~G---~d~~~~~~l~~-G~~G~is~~~n~-~P~~~~~i~ 218 (289)
T PF00701_consen 164 -----------SGDLERLIQLLRAVGPDFSVFCG---DDELLLPALAA-GADGFISGLANV-FPELIVEIY 218 (289)
T ss_dssp -----------SSBHHHHHHHHHHSSTTSEEEES---SGGGHHHHHHT-TSSEEEESGGGT-HHHHHHHHH
T ss_pred -----------chhHHHHHHHhhhcccCeeeecc---ccccccccccc-cCCEEEEccccc-ChHHHHHHH
Confidence 234544555555542 2235556 22335566665 999999998766 467666554
No 315
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.82 E-value=0.086 Score=54.58 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=37.7
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.++.+++..++||+.= ||.+.+|++.+.+. |+|+|.|+
T Consensus 214 ~~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~~-Gvd~I~VS 256 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVK-GPQCPEDADRALKA-GASGIWVT 256 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHHHc-CcCEEEEC
Confidence 468999999999999999966 69999999999986 99998664
No 316
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.81 E-value=0.088 Score=53.59 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=69.4
Q ss_pred ccCChHHHHHHHHHHhcccC-ccEEEEeccCCC-hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH----HHHH
Q 013813 206 LMDNLPLVKSLVEKLALNLN-VPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAIK 279 (436)
Q Consensus 206 Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~~-~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~----~~i~ 279 (436)
.+.+|+.. +-++.+++... .|+.+-+-.... ..+..++.+.++..+++++.+|--.........+.-++ +.++
T Consensus 93 ~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~ 171 (326)
T cd02811 93 ALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIE 171 (326)
T ss_pred hccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHH
Confidence 45567765 56666766664 888877543210 01334455566667899999985332111111223355 5678
Q ss_pred HHHhhCCCcEEE--ccCCCCHHHHHHHHHhcCcceeeee
Q 013813 280 AVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 280 ~ik~~~~iPVia--nGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+++.+++||+. +|...+.++++.+.+ .|+|+|.++
T Consensus 172 ~l~~~~~vPVivK~~g~g~s~~~a~~l~~-~Gvd~I~vs 209 (326)
T cd02811 172 ELVKALSVPVIVKEVGFGISRETAKRLAD-AGVKAIDVA 209 (326)
T ss_pred HHHHhcCCCEEEEecCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 888888999987 565678888888776 599999885
No 317
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.80 E-value=0.076 Score=54.00 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC--ccEEEe---ccCcccccCCCCCccCHHHHHHHHh
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAV---HGRTRDEKDGKKFRADWNAIKAVKN 283 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG--~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~ 283 (436)
+++...+.++.++.. ++ .|-+-.|.+.++. +.+..+.++| +|.|.+ ||-. ..-++.++.+++
T Consensus 67 ~~E~~~sfvrk~k~~-~L--~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~D~ahg~s---------~~~~~~i~~i~~ 133 (321)
T TIGR01306 67 DEESRIPFIKDMQER-GL--FASISVGVKACEY-EFVTQLAEEALTPEYITIDIAHGHS---------NSVINMIKHIKT 133 (321)
T ss_pred CHHHHHHHHHhcccc-cc--EEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEEeCccCch---------HHHHHHHHHHHH
Confidence 666655555555322 33 4444456554554 4455666777 688877 3332 123688999999
Q ss_pred hCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 284 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 284 ~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
....|++..|+|.|.++++.+++. |||+|.+|
T Consensus 134 ~~p~~~vi~GnV~t~e~a~~l~~a-Gad~I~V~ 165 (321)
T TIGR01306 134 HLPDSFVIAGNVGTPEAVRELENA-GADATKVG 165 (321)
T ss_pred hCCCCEEEEecCCCHHHHHHHHHc-CcCEEEEC
Confidence 888999999999999999999986 99999877
No 318
>PLN02979 glycolate oxidase
Probab=95.79 E-value=0.1 Score=53.84 Aligned_cols=43 Identities=21% Similarity=0.575 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.++.+++..++|||.=| |.+.+|++++.+. |+|+|.|+
T Consensus 209 ~ltW~dl~wlr~~~~~PvivKg-V~~~~dA~~a~~~-Gvd~I~Vs 251 (366)
T PLN02979 209 TLSWKDVQWLQTITKLPILVKG-VLTGEDARIAIQA-GAAGIIVS 251 (366)
T ss_pred CCCHHHHHHHHhccCCCEEeec-CCCHHHHHHHHhc-CCCEEEEC
Confidence 4689999999999999988655 6789999999986 99998775
No 319
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.19 Score=49.55 Aligned_cols=142 Identities=15% Similarity=0.260 Sum_probs=85.7
Q ss_pred CCCEEEEecCCC---HHHHHHHH-----HHHcCCCcE--EEEecCCCchhhhcCcccccccCChHHHHHHHHHHh--ccc
Q 013813 157 DRPLFVQFCAND---PEILLNAA-----RRVEPYCDY--VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA--LNL 224 (436)
Q Consensus 157 e~plivQL~g~d---~e~~~~AA-----~~v~~g~D~--IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~--~~~ 224 (436)
+.|+++.|.+++ ++.+.++. ..+..|+|+ +-||+|+... .+.++++.+.+. ...
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e--------------~~~i~~~~~v~~~a~~~ 142 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETE--------------REMIENISQVVEDAHEL 142 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcch--------------HHHHHHHHHHHHHHHHc
Confidence 678888888872 22232222 233446665 5667776542 344444444332 245
Q ss_pred CccEEEEecc-CCCh--------hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCC
Q 013813 225 NVPVSCKIRV-FPNL--------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 225 ~iPVsVKiRl-g~~~--------~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI 295 (436)
++|+.+=+=. |... +.+...++...+.|+|.|-+- +++ +-+.++++.+...+||+..||=
T Consensus 143 Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~---------ytg--~~e~F~~vv~~~~vpVviaGG~ 211 (265)
T COG1830 143 GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK---------YTG--DPESFRRVVAACGVPVVIAGGP 211 (265)
T ss_pred CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec---------CCC--ChHHHHHHHHhCCCCEEEeCCC
Confidence 8898774321 2221 223344567789999988431 222 2366788888888999999997
Q ss_pred CC--HHHHH----HHHHhcCcceeeeehHHhhCCc
Q 013813 296 RH--MEDVQ----KCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 296 ~s--~eda~----~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++ .+++. ..++. |+.|+.+||=+...+.
T Consensus 212 k~~~~~~~l~~~~~ai~a-Ga~G~~~GRNifQ~~~ 245 (265)
T COG1830 212 KTETEREFLEMVTAAIEA-GAMGVAVGRNIFQHED 245 (265)
T ss_pred CCCChHHHHHHHHHHHHc-cCcchhhhhhhhccCC
Confidence 76 34444 34554 9999999997765544
No 320
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=95.79 E-value=0.21 Score=52.17 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=88.8
Q ss_pred CHHHHHHHHH-HHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~-~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++.+-++ .++ .||..+-|..|- .+++.-.+.|+++++.+ ++.+.|...-+++.+++.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 6777776664 444 599999887541 22444556777887776 35566665557888999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
++.+++ ++.+| ++ .. + |++..+++++.+++||.+.=.+.+.+++.++++...+|.++
T Consensus 233 ~~~l~~-~l~~i-------Ee--P~--~-d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~ 289 (395)
T cd03323 233 AKELEG-VLAYL-------ED--PC--G-GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPL 289 (395)
T ss_pred HHhcCc-CCCEE-------EC--CC--C-CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEe
Confidence 999998 87765 22 11 3 78889999999999999877899999999999987788774
No 321
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=95.77 E-value=0.12 Score=53.04 Aligned_cols=89 Identities=20% Similarity=0.305 Sum_probs=66.1
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcc-------cccC----------------------------CCC
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-------DEKD----------------------------GKK 270 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~-------~~~~----------------------------~~~ 270 (436)
.|+++-+-...+.+.+.++.+.++++|++.|.||--+. +.+. ...
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 57776655555667778899999999999998862111 1000 011
Q ss_pred CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 271 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 271 g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+...|+.++.+++..++||+.- ||.+.+|++.+.+. |+|+|.+.
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~~-G~d~I~vs 241 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAEY-GVDGIVLS 241 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHHc-CCCEEEEE
Confidence 2367999999999999999887 67899999998875 99998875
No 322
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.77 E-value=0.032 Score=63.05 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=57.0
Q ss_pred cCccEEEeccCccccc-CCCCCccCHHHHHHHHhhCC---CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccc
Q 013813 251 AGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 326 (436)
Q Consensus 251 aG~d~I~VHgRt~~~~-~~~~g~ad~~~i~~ik~~~~---iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf 326 (436)
+|+|+|.+..-..... .+...+..|+.++++++..+ +||++-||| +.+++.++++. |++||.+.++++..++..
T Consensus 127 ~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~-Ga~giAvisai~~a~d~~ 204 (755)
T PRK09517 127 ALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAAT-GIDGLCVVSAIMAAANPA 204 (755)
T ss_pred CCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHc-CCCEEEEehHhhCCCCHH
Confidence 3699998865433221 12222457899999998887 999999999 68999998885 999999999998777644
No 323
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.76 E-value=0.12 Score=51.52 Aligned_cols=97 Identities=25% Similarity=0.360 Sum_probs=64.4
Q ss_pred HHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccC-----CCCCccCHHHHHHHHhhCCCcEE--
Q 013813 218 EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVL-- 290 (436)
Q Consensus 218 ~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~-----~~~g~ad~~~i~~ik~~~~iPVi-- 290 (436)
...++..+.|+.+=++ +.+.++..+.|+.++++|+|+|.+|-....... ......-.+.++.+++.+++||+
T Consensus 82 ~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK 160 (296)
T cd04740 82 LPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVK 160 (296)
T ss_pred HHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEE
Confidence 3344445789988875 445688889999999999999999754322111 01001123567778888789987
Q ss_pred EccCCCCHHHHHHHHHhcCcceeee
Q 013813 291 ANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 291 anGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+.++.+..++.+.+++.|+|+|.+
T Consensus 161 l~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 161 LTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred eCCCchhHHHHHHHHHHcCCCEEEE
Confidence 4555555666556666679999865
No 324
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.75 E-value=0.082 Score=52.60 Aligned_cols=91 Identities=16% Similarity=0.291 Sum_probs=60.7
Q ss_pred HHHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-----C
Q 013813 213 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----L 285 (436)
Q Consensus 213 v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-----~ 285 (436)
+.+.++.+++... .+|.|=++ ..+-++.+.++|+|.|-+-. .+.+.++++.+. .
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~-------tleea~~A~~~GaDiI~LDn------------~~~e~l~~~v~~~~~~~~ 228 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECE-------SLEEAKNAMNAGADIVMCDN------------MSVEEIKEVVAYRNANYP 228 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeC-------CHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhhccCC
Confidence 4566777776653 45555432 23335556689999886532 234555555443 3
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
++.|.++||| +++.+.++.+ +|+|.|.+|.....-|+
T Consensus 229 ~~~ieAsGgI-t~~ni~~ya~-~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 229 HVLLEASGNI-TLENINAYAK-SGVDAISSGSLIHQATW 265 (273)
T ss_pred CeEEEEECCC-CHHHHHHHHH-cCCCEEEeChhhcCCCc
Confidence 5679999999 9999999987 59999999976553443
No 325
>PRK08185 hypothetical protein; Provisional
Probab=95.75 E-value=0.37 Score=48.26 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHcCccEEEe-----ccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCccee
Q 013813 240 DTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGV 313 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~V-----HgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgV 313 (436)
+..+..+.+++.|+|.+.+ ||..... .+...+++.+++|++.+++|+++-||+..+ ++++++++. |+.-|
T Consensus 150 ~peea~~f~~~TgvD~LAvaiGt~HG~y~~~---~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~-GI~Ki 225 (283)
T PRK08185 150 DPEQAEDFVSRTGVDTLAVAIGTAHGIYPKD---KKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQL-GVGKI 225 (283)
T ss_pred CHHHHHHHHHhhCCCEEEeccCcccCCcCCC---CCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHC-CCeEE
Confidence 3344344445669999999 7765432 122468999999999999999999998655 556667764 88888
Q ss_pred eeehHH
Q 013813 314 LSAESL 319 (436)
Q Consensus 314 mIGRga 319 (436)
=|++.+
T Consensus 226 Ni~T~l 231 (283)
T PRK08185 226 NISSDM 231 (283)
T ss_pred EeChHH
Confidence 777655
No 326
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=95.73 E-value=0.49 Score=47.96 Aligned_cols=131 Identities=10% Similarity=0.138 Sum_probs=90.9
Q ss_pred CCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEecc
Q 013813 158 RPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRl 234 (436)
.|+.+-| .+++++.+.+ +.++.|+..+-+-.|= .+++.-.+.|+++++.+ ++.+.+-..-
T Consensus 110 ~~~~~~i--~~~~~~~~~a~~~~~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~ 172 (320)
T PRK02714 110 LSYSALL--PAGEAALQQWQTLWQQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANG 172 (320)
T ss_pred Cceeeec--CCCHHHHHHHHHHHHcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 4444444 2334455444 4567799888886431 23444566677777776 4666666666
Q ss_pred CCChhhHHHHHHHHHH---cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 235 FPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 235 g~~~~d~~~~ak~le~---aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
+|+.+++..+++.+++ .++.+| +|... .-+++..+.+++.+++||.+.=.+.+..|+.++++...+|
T Consensus 173 ~w~~~~A~~~~~~l~~l~~~~i~~i-------EqP~~---~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d 242 (320)
T PRK02714 173 GLSLEEAKRWLQLCDRRLSGKIEFI-------EQPLP---PDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRG 242 (320)
T ss_pred CCCHHHHHHHHHHHhhccCCCccEE-------ECCCC---cccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCC
Confidence 7899999999999987 566665 22111 2368888999999999999999999999999999875566
Q ss_pred eeee
Q 013813 312 GVLS 315 (436)
Q Consensus 312 gVmI 315 (436)
.|.+
T Consensus 243 ~v~i 246 (320)
T PRK02714 243 IFVI 246 (320)
T ss_pred EEEE
Confidence 5543
No 327
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.73 E-value=0.18 Score=50.21 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++.+ ..|+++|=+|. ..|-+..-..+.=.++++.+.+.+ ++||.+-+-. .+..+++++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~G----------s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~ 88 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVG----------TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIEL 88 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHHH
Confidence 566777777654 56999999873 234444444555556666555544 4788877422 366899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-E-----ccCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-a-----nGGI~s~eda~~~l~~tGaDgVm 314 (436)
++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+ + .|---+.+.+.++.+...+-|+=
T Consensus 89 a~~a~~~G~d~v~~~pP~~~~---~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK 161 (292)
T PRK03170 89 TKFAEKAGADGALVVTPYYNK---PTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIK 161 (292)
T ss_pred HHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEE
Confidence 999999999999885432110 0001224667778887888876 2 35556777777775433444443
No 328
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.68 E-value=0.49 Score=45.75 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=86.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchh--hh------cC-----cccccccCChHHHHHHHHHHhc
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRI--AR------RG-----NYGAFLMDNLPLVKSLVEKLAL 222 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~--~~------~~-----~~Gs~Ll~~p~~v~eIv~av~~ 222 (436)
..+++.=+.+.++++..+.++.+ +.|...|||-+-.|... .+ .. .-|+.-.-+++.+.+.+++=.+
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~ 93 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN 93 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC
Confidence 46778778999999999999765 55899999998655421 00 00 1222223344444333322000
Q ss_pred c----------------cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-C
Q 013813 223 N----------------LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-L 285 (436)
Q Consensus 223 ~----------------~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~ 285 (436)
- .++|+.-. ....-| +..+.++|++.|-+..-. .....+++.++.- .
T Consensus 94 FiVsP~~~~~v~~~~~~~~i~~iPG------~~TpsE-i~~A~~~Ga~~vKlFPA~---------~~G~~~ikal~~p~p 157 (222)
T PRK07114 94 FIVTPLFNPDIAKVCNRRKVPYSPG------CGSLSE-IGYAEELGCEIVKLFPGS---------VYGPGFVKAIKGPMP 157 (222)
T ss_pred EEECCCCCHHHHHHHHHcCCCEeCC------CCCHHH-HHHHHHCCCCEEEECccc---------ccCHHHHHHHhccCC
Confidence 0 01111000 000111 112334555555444311 0124678888764 4
Q ss_pred CCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 286 RIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 286 ~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
+++++..|||.- .+++.++++. |+.+|.+|+.+..+.+
T Consensus 158 ~i~~~ptGGV~~~~~n~~~yl~a-Ga~avg~Gs~L~~~~~ 196 (222)
T PRK07114 158 WTKIMPTGGVEPTEENLKKWFGA-GVTCVGMGSKLIPKEA 196 (222)
T ss_pred CCeEEeCCCCCcchhcHHHHHhC-CCEEEEEChhhcCccc
Confidence 799999999985 5899999995 9999999987775444
No 329
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=95.62 E-value=0.37 Score=48.58 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=90.3
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCC
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~ 236 (436)
+....|...+++.+.+.+.. +.|+..|-+..| . .+++.-.+.|+++++.++ +.+.+-..-+|
T Consensus 102 ~~~~~l~~~~~~~~~~~~~~-~~Gf~~~KiKvG------------~---~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w 165 (307)
T TIGR01927 102 YYVALLPAGDPALLLLRSAK-AEGFRTFKWKVG------------V---GELAREGMLVNLLLEALPDKAELRLDANGGL 165 (307)
T ss_pred cceeeccCCCHHHHHHHHHH-hCCCCEEEEEeC------------C---CChHHHHHHHHHHHHHcCCCCeEEEeCCCCC
Confidence 33445666778877665554 568888887643 1 134555667777777663 44555544568
Q ss_pred ChhhHHHHHHHHHH---cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 237 NLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 237 ~~~d~~~~ak~le~---aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+.+++.++++.+++ .++.+| ++. . +. ++..+.+++.+++||.+.=.+.+..|+.++++...+|.|
T Consensus 166 ~~~~A~~~~~~l~~~~~~~i~~i-------EqP--~--~~-~~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i 233 (307)
T TIGR01927 166 SPDEAQQFLKALDPNLRGRIAFL-------EEP--L--PD-ADEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGAL 233 (307)
T ss_pred CHHHHHHHHHhcccccCCCceEE-------eCC--C--CC-HHHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceE
Confidence 88899999999997 677776 221 1 22 267788999999999999999999999999987556776
Q ss_pred ee
Q 013813 314 LS 315 (436)
Q Consensus 314 mI 315 (436)
.+
T Consensus 234 ~i 235 (307)
T TIGR01927 234 VI 235 (307)
T ss_pred EE
Confidence 54
No 330
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=95.60 E-value=0.12 Score=53.41 Aligned_cols=43 Identities=21% Similarity=0.575 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.++.+++..++|||.=| |.+.+|++.+++. |||+|.|+
T Consensus 210 ~~tW~di~wlr~~~~~PiivKg-V~~~~dA~~a~~~-Gvd~I~Vs 252 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILVKG-VLTGEDARIAIQA-GAAGIIVS 252 (367)
T ss_pred CCCHHHHHHHHhccCCCEEeec-CCCHHHHHHHHHc-CCCEEEEC
Confidence 4689999999999999988654 5789999999986 99998875
No 331
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=95.57 E-value=0.1 Score=54.33 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=69.2
Q ss_pred HHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEe-----ccCcccccCCCCCccCHHHH----HHHHhhCC
Q 013813 217 VEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAI----KAVKNALR 286 (436)
Q Consensus 217 v~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V-----HgRt~~~~~~~~g~ad~~~i----~~ik~~~~ 286 (436)
+..+++.. ++||.+=+--+.+.++..++++.++++|+|+|.+ |+..-.. .+....-+.+.+ +.+++.++
T Consensus 104 i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~~~ 182 (385)
T PLN02495 104 FKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAKAT 182 (385)
T ss_pred HHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHhhc
Confidence 45566555 6799988644467789999999999999999987 3210000 000001234445 55576678
Q ss_pred CcEE--EccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 287 IPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 287 iPVi--anGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
+||+ ..-++.+..++.+.+.+.|+|||.+---+.
T Consensus 183 iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 183 VPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred CceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 8876 677888888888877778999988754443
No 332
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.56 E-value=0.2 Score=49.76 Aligned_cols=126 Identities=19% Similarity=0.152 Sum_probs=81.0
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+++|=++. ..|-+..-..+.=.++++.+.+.+ .+||.+-+- ..+.++++++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~~i~~ 85 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVG----------TTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEEAISL 85 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHHHHHH
Confidence 55666666654 467999998872 234344444555555555554443 478888842 2356889999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE------ccCCCCHHHHHHHHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA------NGNVRHMEDVQKCLEE 307 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia------nGGI~s~eda~~~l~~ 307 (436)
++.++++|+|++.+..-... ..+...-+++.+.|.+.+++||+. .|---+++.+.++.+.
T Consensus 86 a~~a~~~Gad~v~v~pP~y~---~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 151 (285)
T TIGR00674 86 TKFAEDVGADGFLVVTPYYN---KPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEE 151 (285)
T ss_pred HHHHHHcCCCEEEEcCCcCC---CCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcC
Confidence 99999999999988643221 011112246677888888888862 4555677878777654
No 333
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.49 E-value=0.14 Score=52.97 Aligned_cols=43 Identities=23% Similarity=0.621 Sum_probs=38.7
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
...|+.|+.|++..+.|||.-| |.+.+|++++++. |+|+|.++
T Consensus 222 ~~~w~~i~~ir~~~~~pviiKg-V~~~eda~~a~~~-G~d~I~VS 264 (361)
T cd04736 222 SFNWQDLRWLRDLWPHKLLVKG-IVTAEDAKRCIEL-GADGVILS 264 (361)
T ss_pred cCCHHHHHHHHHhCCCCEEEec-CCCHHHHHHHHHC-CcCEEEEC
Confidence 4679999999999999999886 9999999999986 99999875
No 334
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.48 E-value=0.71 Score=43.97 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=78.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchh--h---hc----CcccccccCChHHHHHHHHHHhcccCc
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRI--A---RR----GNYGAFLMDNLPLVKSLVEKLALNLNV 226 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~--~---~~----~~~Gs~Ll~~p~~v~eIv~av~~~~~i 226 (436)
..+++.=|-+.++++..+.++.+ +.|+..|||.+-.|... . ++ -.-|+.-.-+++.+.+.+++=.
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA----- 77 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS----- 77 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-----
Confidence 46788889999999999999866 55899999998655420 0 00 0012222223333333332210
Q ss_pred cEEEEeccCCChhhHHHH-----------------HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCc
Q 013813 227 PVSCKIRVFPNLQDTIKY-----------------AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIP 288 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~-----------------ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iP 288 (436)
-+.|= .+.+ .+..+. +..+.++|++.|-+..-.. .+ --.+++.++.- .++|
T Consensus 78 ~FivS--P~~~-~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~---~G-----G~~yikal~~plp~~~ 146 (201)
T PRK06015 78 RFIVS--PGTT-QELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQ---AG-----GAAFLKALSSPLAGTF 146 (201)
T ss_pred CEEEC--CCCC-HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchh---hC-----CHHHHHHHHhhCCCCc
Confidence 00000 0000 011111 1112334444444432111 00 13678888865 4899
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
++..|||. .+.+.++++. |+..+..|..+.
T Consensus 147 l~ptGGV~-~~n~~~~l~a-g~~~~~ggs~l~ 176 (201)
T PRK06015 147 FCPTGGIS-LKNARDYLSL-PNVVCVGGSWVA 176 (201)
T ss_pred EEecCCCC-HHHHHHHHhC-CCeEEEEchhhC
Confidence 99999997 5899999997 555555564443
No 335
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.42 E-value=0.081 Score=51.87 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
.+..++|+.++++|+++|.|.-- +.+ + .-+++.++.+++.+++||+..+.|.++.++.+... .|||+|.+=-+
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe---~~~-F--~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~-~GADavLLI~~ 133 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTD---QSY-F--GGSLEDLKSVSSELKIPVLRKDFILDEIQIREARA-FGASAILLIVR 133 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcC---CCc-C--CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHH-cCCCEEEeEHh
Confidence 36788999999999999977522 111 2 34689999999999999999999999999999988 59999976544
Q ss_pred Hhh
Q 013813 319 LLE 321 (436)
Q Consensus 319 al~ 321 (436)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 443
No 336
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=95.38 E-value=0.46 Score=48.16 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=88.6
Q ss_pred CCCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEecc
Q 013813 157 DRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 234 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRl 234 (436)
..|+...+...+++++.+.+ +.++.||..+-+-.| | ..+ .+.++++++.+ ++.+.+-..-
T Consensus 121 ~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~-------------~~d----~~~v~~vr~~~~~~~l~vDaN~ 182 (324)
T TIGR01928 121 KAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-P-------------QIM----HQLVKLRRLRFPQIPLVIDANE 182 (324)
T ss_pred eEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C-------------chh----HHHHHHHHHhCCCCcEEEECCC
Confidence 34555556667777776666 455679998888753 1 012 34566666665 2334444444
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+|+.+++ ..++.+++.++.+| ++... +-|++..+++++.+++||.+.=.+.+..+++++++...+|.++
T Consensus 183 ~~~~~~a-~~~~~l~~~~~~~i-------EeP~~---~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~ 251 (324)
T TIGR01928 183 SYDLQDF-PRLKELDRYQLLYI-------EEPFK---IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVIN 251 (324)
T ss_pred CCCHHHH-HHHHHHhhCCCcEE-------ECCCC---hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEE
Confidence 5776664 56888888887776 21110 2367888999999999999988899999999999987788875
Q ss_pred e
Q 013813 315 S 315 (436)
Q Consensus 315 I 315 (436)
+
T Consensus 252 ~ 252 (324)
T TIGR01928 252 I 252 (324)
T ss_pred e
Confidence 3
No 337
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.35 E-value=0.11 Score=53.08 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc--cEEEeccCcccccCCCCCccCHHHHHHHHhhCC
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC--SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 286 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~--d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~ 286 (436)
+++...+.++.++ +..+.|-+-.+.+.++ .+-+..+.++|+ |.|.|-.-... ...-.+.|+++++..+
T Consensus 70 ~~e~~~~~~r~~~---~~~l~v~~~vg~~~~~-~~~~~~Lv~ag~~~d~i~iD~a~gh------~~~~~e~I~~ir~~~p 139 (326)
T PRK05458 70 DPEARIPFIKDMH---EQGLIASISVGVKDDE-YDFVDQLAAEGLTPEYITIDIAHGH------SDSVINMIQHIKKHLP 139 (326)
T ss_pred CHHHHHHHHHhcc---ccccEEEEEecCCHHH-HHHHHHHHhcCCCCCEEEEECCCCc------hHHHHHHHHHHHhhCC
Confidence 6766666664443 2233455445544333 455777778855 99988322110 0223577999998775
Q ss_pred CcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 287 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 287 iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
-..+..|+|.|.++++.+.+. |||+|.+|
T Consensus 140 ~~~vi~g~V~t~e~a~~l~~a-Gad~i~vg 168 (326)
T PRK05458 140 ETFVIAGNVGTPEAVRELENA-GADATKVG 168 (326)
T ss_pred CCeEEEEecCCHHHHHHHHHc-CcCEEEEC
Confidence 344566779999999998886 99999877
No 338
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.35 E-value=0.38 Score=48.07 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=84.5
Q ss_pred CHHHHHHHHHH-Hc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAARR-VE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
|.+.+.+-++. +. .|+++|=++. ..|-+..-..+.-.++++.+.+.+ .+||.+-+-. .+.+++++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~~ai~ 90 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGG----------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQE 90 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECC----------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHHHHHH
Confidence 55667766654 46 7899998883 344444445566666666665555 4788887422 45689999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc------cCCCCHHHHHHHHHhcCccee
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN------GNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian------GGI~s~eda~~~l~~tGaDgV 313 (436)
+++.++++|+|++.+..-.... .+...-+++.+.|.+.+++||+.- |---+++.+.++.+..++-||
T Consensus 91 ~a~~a~~~Gad~v~v~~P~y~~---~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgi 163 (293)
T PRK04147 91 LAKYATELGYDAISAVTPFYYP---FSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGV 163 (293)
T ss_pred HHHHHHHcCCCEEEEeCCcCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEE
Confidence 9999999999999886432110 111122566778888888887643 444567777776643334343
No 339
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=95.32 E-value=0.079 Score=50.06 Aligned_cols=82 Identities=30% Similarity=0.319 Sum_probs=59.7
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.+.++..+..+.+...--..+++-...+-+.+. ..|++++..+.....-||+..|||.-.+|.+.+... |++||.+
T Consensus 134 ~~~ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~---G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~-Gv~gvLv 209 (229)
T COG1411 134 PWLEDFLETVKDLNYRRDPGLIVLDIGAVGTKS---GPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGM-GVSGVLV 209 (229)
T ss_pred CCchhHHHHHHHHhccCCCCeEEEEcccccccc---CCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcC-CCceeee
Confidence 446677777776655443334443222222222 368999999999889999999999999999998884 9999999
Q ss_pred ehHHhh
Q 013813 316 AESLLE 321 (436)
Q Consensus 316 GRgal~ 321 (436)
|+++-.
T Consensus 210 aTalh~ 215 (229)
T COG1411 210 ATALHE 215 (229)
T ss_pred hhhhhc
Confidence 998754
No 340
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.31 E-value=0.26 Score=50.55 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=77.8
Q ss_pred HHHcCCCcEEEEecCCCchhhhcCccccccc-----CChHHHHHHHHHHhcccCccEEEEe--c-cCC-----------C
Q 013813 177 RRVEPYCDYVDINLGCPQRIARRGNYGAFLM-----DNLPLVKSLVEKLALNLNVPVSCKI--R-VFP-----------N 237 (436)
Q Consensus 177 ~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll-----~~p~~v~eIv~av~~~~~iPVsVKi--R-lg~-----------~ 237 (436)
++++.|+|+|-+++- ||+.-- .....+.++.++++ ..++|+.+=+ . .+. .
T Consensus 114 ~a~~~GAdAVk~lv~----------~~~d~~~~~~~~~~~~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~a~~~ 182 (340)
T PRK12858 114 RIKEAGADAVKLLLY----------YRPDEDDAINDRKHAFVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEFAKVK 182 (340)
T ss_pred HHHHcCCCEEEEEEE----------eCCCcchHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCccccccccccccC
Confidence 345679998877641 222100 11234566666654 4489987742 1 111 1
Q ss_pred hhhHHHHHHHHHH--cCccEEEeccC----cccccC----CCCCccCHHHHHHHHhhCCCcEEE-ccCCCCHHHHHHHHH
Q 013813 238 LQDTIKYAKMLED--AGCSLLAVHGR----TRDEKD----GKKFRADWNAIKAVKNALRIPVLA-NGNVRHMEDVQKCLE 306 (436)
Q Consensus 238 ~~d~~~~ak~le~--aG~d~I~VHgR----t~~~~~----~~~g~ad~~~i~~ik~~~~iPVia-nGGI~s~eda~~~l~ 306 (436)
.+.....++.+.+ .|+|.+-+--- ..++.. -++...-.+.++++.+..++|++. +||+ +.+++.+.++
T Consensus 183 p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~ 261 (340)
T PRK12858 183 PEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLE 261 (340)
T ss_pred HHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHH
Confidence 2344566777774 99999866211 111100 000011124567777778899765 7887 6666665543
Q ss_pred ---hcCc--ceeeeehHHhhCCc
Q 013813 307 ---ETGC--EGVLSAESLLENPA 324 (436)
Q Consensus 307 ---~tGa--DgVmIGRgal~nP~ 324 (436)
..|+ .||.+||....++-
T Consensus 262 ~A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 262 FACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHHcCCCccchhhhHHHHhhhh
Confidence 2489 99999999877665
No 341
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.27 E-value=0.35 Score=48.45 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=86.3
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. +..|+++|=++. ..|-+..-..+.-.++++.+.+.+ ++||.+-+-. .+..+++++
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~G----------stGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~~ 87 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGG----------TSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDETLEL 87 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHHHHHH
Confidence 55666666654 456899998883 345444445555566666555444 4788877422 456789999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEE-E-----ccCCCCHHHHHHHHH-hcCcceeeee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE-ETGCEGVLSA 316 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVi-a-----nGGI~s~eda~~~l~-~tGaDgVmIG 316 (436)
++.+++.|+|++.+..-.... .+...-+++.+.|.+.+ ++||+ + .|---+++.+.++.+ ..++-||=-.
T Consensus 88 a~~A~~~Gad~v~v~pP~y~~---~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~s 164 (294)
T TIGR02313 88 TKFAEEAGADAAMVIVPYYNK---PNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKES 164 (294)
T ss_pred HHHHHHcCCCEEEEcCccCCC---CCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeC
Confidence 999999999999886533211 00012256677888888 89976 3 355556777777764 3344454443
Q ss_pred h
Q 013813 317 E 317 (436)
Q Consensus 317 R 317 (436)
.
T Consensus 165 s 165 (294)
T TIGR02313 165 N 165 (294)
T ss_pred C
Confidence 3
No 342
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.26 E-value=0.41 Score=47.68 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=81.0
Q ss_pred CHHHHHHHHHH-HcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAARR-VEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
|.+.+.+-++. ++. |+++|=++- ..|-+..-..+.=.++++.+.+.+ .+||.+-+-. .+..++++
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~G----------stGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai~ 87 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNG----------STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQE 87 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHHH
Confidence 56667776654 467 899998882 334444444555566666555544 4788887432 45688999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEE------ccCCCCHHHHHHHHH
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLA------NGNVRHMEDVQKCLE 306 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVia------nGGI~s~eda~~~l~ 306 (436)
+++.++++|+|++.+..-.... .+...-+++.+.|.+.+ ++||+. .|---+++.+.++.+
T Consensus 88 ~a~~a~~~Gad~v~~~~P~y~~---~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 88 LAKHAEELGYDAISAITPFYYK---FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHHHHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 9999999999999875422111 00012256678888888 889863 344557777777665
No 343
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.26 E-value=0.12 Score=52.66 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH--cCccEEEe---ccCcccccCCCCCccCHHHHHHHHhh
Q 013813 210 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED--AGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNA 284 (436)
Q Consensus 210 p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~--aG~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~~ 284 (436)
++.-.+.++.++.....-+.| ..|...++ .+.++.|.+ +|+|.|+| ||-.. .-.+.|+.||+.
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~~d-~er~~~L~~~~~g~D~iviD~AhGhs~---------~~i~~ik~ik~~ 148 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSDAD-FEKTKQILALSPALNFICIDVANGYSE---------HFVQFVAKAREA 148 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCHHH-HHHHHHHHhcCCCCCEEEEECCCCcHH---------HHHHHHHHHHHh
Confidence 455555555555443223333 23434344 344555555 69999988 33321 235789999987
Q ss_pred C-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 285 L-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 285 ~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
. +++ +..|+|-|.+.++.+++. |||+|-+|=|
T Consensus 149 ~P~~~-vIaGNV~T~e~a~~Li~a-GAD~vKVGIG 181 (346)
T PRK05096 149 WPDKT-ICAGNVVTGEMVEELILS-GADIVKVGIG 181 (346)
T ss_pred CCCCc-EEEecccCHHHHHHHHHc-CCCEEEEccc
Confidence 5 555 667999999999998886 9999876633
No 344
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=95.25 E-value=0.61 Score=46.77 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHhcccCccEEEEecc-C-C-C--------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHH
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIRV-F-P-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 276 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiRl-g-~-~--------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~ 276 (436)
++-+..+++++..+ ..+++|-.=+-. | . + ..++.+..+.+++.|+|.+.|.-.|..+.|......|++
T Consensus 115 eNi~~T~~vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~ 193 (286)
T PRK08610 115 ENVATTKKVVEYAH-EKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFK 193 (286)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHH
Confidence 34555666666554 345555544321 1 0 0 124444455556889999977544444444333357999
Q ss_pred HHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 277 AIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 277 ~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
.+++|++.+++|++.-||=..+ ++++++++. |+.-|=|++.+
T Consensus 194 ~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~-GI~KiNi~T~l 236 (286)
T PRK08610 194 EMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPF-GTAKINVNTEN 236 (286)
T ss_pred HHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHC-CCeEEEeccHH
Confidence 9999999999999999986666 667777774 88877777544
No 345
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.25 E-value=0.29 Score=48.67 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=88.6
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 155 KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 155 ~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.+-|++--+ .++++...++ +.+|.+.| |+.++++.+++. ++. .++.||-+|=-.
T Consensus 85 ~~GlpvvTeV--~~~~~~~~~a----e~vDilQI--------------gAr~~rntdLL~----a~~-~t~kpV~lKrGq 139 (281)
T PRK12457 85 RFGVPVITDV--HEVEQAAPVA----EVADVLQV--------------PAFLARQTDLVV----AIA-KTGKPVNIKKPQ 139 (281)
T ss_pred HHCCceEEEe--CCHHHHHHHh----hhCeEEee--------------CchhhchHHHHH----HHh-ccCCeEEecCCC
Confidence 3466777655 3444444443 33677765 677788765554 443 458999999554
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEc---------------cCCCCH
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLAN---------------GNVRHM 298 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVian---------------GGI~s~ 298 (436)
+.+.++....++.+.+.|...|.+.-|-..-.+. ....|...+..+++. .++|||.- ||.+..
T Consensus 140 f~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~-~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~ 218 (281)
T PRK12457 140 FMSPTQMKHVVSKCREAGNDRVILCERGSSFGYD-NLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQ 218 (281)
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCC-CcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHH
Confidence 5777888888999999999999886554331121 225788888999986 68999863 443322
Q ss_pred --HHHHHHHHhcCcceeeee
Q 013813 299 --EDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 299 --eda~~~l~~tGaDgVmIG 316 (436)
.-++..+. .|+||+||=
T Consensus 219 v~~larAAvA-~GaDGl~iE 237 (281)
T PRK12457 219 VLDLARAGMA-VGLAGLFLE 237 (281)
T ss_pred HHHHHHHHHH-hCCCEEEEE
Confidence 22333444 599999986
No 346
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.22 E-value=0.42 Score=45.52 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC-----hhhH
Q 013813 168 DPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-----LQDT 241 (436)
Q Consensus 168 d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~-----~~d~ 241 (436)
+.....++++.+ +.|+..+++| .+ +.++.+++.+++||..-.|.+.+ ....
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~~-------------------~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~ 81 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRAN-------------------GV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITPT 81 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEcC-------------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCCC
Confidence 456777888755 5578777741 12 33455555578898653333221 1112
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+.++.+.++|++.|.+....... .. +....++++.+++..++|++. ++.|.+++..+.+. |+|.+.+.
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~-p~--~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~~~-G~d~i~~~ 150 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPR-PD--GETLAELIKRIHEEYNCLLMA--DISTLEEALNAAKL-GFDIIGTT 150 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCC-CC--CcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHHHc-CCCEEEcc
Confidence 456788999999988775432210 00 012346677777665677776 78899999888875 99998653
No 347
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.21 E-value=0.4 Score=47.90 Aligned_cols=125 Identities=12% Similarity=0.126 Sum_probs=79.6
Q ss_pred CHHHHHHHHHH-HcCC-CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAARR-VEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g-~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~ 243 (436)
|.+.+.+-++. +..| +++|=+| |..|-+..-..+.-.++++.+.+.+ .+||.+-+- ..+.+++++
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~----------GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~i~ 87 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVG----------GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKEAVE 87 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEEC----------CcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHH
Confidence 55666666654 4568 9999888 3345444446666667777666555 478888843 245689999
Q ss_pred HHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEE-E-----ccCCCCHHHHHHHHH
Q 013813 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE 306 (436)
Q Consensus 244 ~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVi-a-----nGGI~s~eda~~~l~ 306 (436)
+++.++++|+|+|.+..-.... .+...-+++.+.+.+.+ ++||+ + .|---+++.+.++.+
T Consensus 88 la~~a~~~Gad~v~v~~P~y~~---~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 88 LGKYATELGYDCLSAVTPFYYK---FSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHHHHHhCCCEEEEeCCcCCC---CCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 9999999999999885322110 00011245566676655 67765 3 255556777776654
No 348
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.21 E-value=0.17 Score=50.76 Aligned_cols=92 Identities=14% Similarity=0.333 Sum_probs=58.4
Q ss_pred HHHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh-----hC
Q 013813 213 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-----AL 285 (436)
Q Consensus 213 v~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~-----~~ 285 (436)
+.+.++.+++..+ ..|.|-++ +.++ +..+.++|+|.|-+-.-. .+.++++.+ ..
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~---tlee----a~eA~~~GaD~I~LDn~~------------~e~l~~av~~~~~~~~ 242 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETE---TLEQ----VQEALEYGADIIMLDNMP------------VDLMQQAVQLIRQQNP 242 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECC---CHHH----HHHHHHcCCCEEEECCCC------------HHHHHHHHHHHHhcCC
Confidence 4456666666653 23333321 2233 444558999999775221 233333332 35
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
++|+.++||| +.+.+.++.+ +|+|+|.+|.....-|++
T Consensus 243 ~i~leAsGGI-t~~ni~~ya~-tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 243 RVKIEASGNI-TLETIRAVAE-TGVDYISSSAPITRSPWL 280 (288)
T ss_pred CeEEEEECCC-CHHHHHHHHH-cCCCEEEEchhhhCCCcc
Confidence 7899999999 4899999886 699999999877655553
No 349
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.19 E-value=0.17 Score=50.55 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=47.0
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
++.+.+.|+|+|.+- ....+.++++++..+ +||.+.||| +.+.+.++.+ +|+|+|.+|.-..
T Consensus 201 a~~A~~~gaDyI~lD------------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~-~Gvd~IAvg~l~~ 264 (277)
T PRK08072 201 VREAVAAGADIIMFD------------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG-TGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHcCCCEEEEC------------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH-cCCCEEEEChhhc
Confidence 455668999999772 123466777777654 778899999 5899999887 5999999996433
No 350
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.18 E-value=0.36 Score=47.84 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=101.1
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC
Q 013813 102 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEP 181 (436)
Q Consensus 102 ~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~ 181 (436)
++|+++|-....++..+-+.+.+.|++.+.|.-++.+....+...+ ++.+-... + .
T Consensus 9 ~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr-------------~~~~~~~~-~----------~ 64 (289)
T cd02810 9 KNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPR-------------VARLPPEG-E----------S 64 (289)
T ss_pred CCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCC-------------EEEecccc-c----------c
Confidence 6789999888866776666666789999999888765443333221 12111100 0 0
Q ss_pred CC-cEEEEe-cCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEe
Q 013813 182 YC-DYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV 258 (436)
Q Consensus 182 g~-D~IdLN-~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~V 258 (436)
+. +.==+| +|-|. .-++...+-+...++. .+.|+.+=++. .+.++..+.++.++++|+|+|.+
T Consensus 65 ~~~~~~~~n~~g~~~-------------~g~~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~iel 130 (289)
T cd02810 65 YPEQLGILNSFGLPN-------------LGLDVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALEL 130 (289)
T ss_pred CcccceEeecCCCCC-------------cCHHHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEE
Confidence 00 111122 11111 0133333333333443 57898888654 45678889999999999999999
Q ss_pred ccCcccccCCCCCc----cCHHHHHHHHhhCCCcEEE--ccCCC--CHHHHHHHHHhcCcceeeee
Q 013813 259 HGRTRDEKDGKKFR----ADWNAIKAVKNALRIPVLA--NGNVR--HMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 259 HgRt~~~~~~~~g~----ad~~~i~~ik~~~~iPVia--nGGI~--s~eda~~~l~~tGaDgVmIG 316 (436)
+........+.... .-.+.++.+++.+++||++ ++++. +..++.+.+++.|+|+|.+.
T Consensus 131 N~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 131 NLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred EcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 75543221111001 1135677788877888874 44443 23333444556799999875
No 351
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=95.17 E-value=0.46 Score=51.03 Aligned_cols=215 Identities=15% Similarity=0.183 Sum_probs=122.8
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHhCCCcEEEccCCCCC-cHHHHHHHHHhC--C----CeEEeCcccchhhccChhhhh
Q 013813 76 SLPSPRGYLSGEARAERAWAHWTKLGRPKLIVAPMVDNS-ELPFRMLCRRYG--A----EAAYTPMLHSRIFTESEKYRN 148 (436)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~i~lAPM~gvt-d~~fR~l~~~~G--a----~l~~Temisa~~l~~~~~~~~ 148 (436)
=+|.--|--+|+.+++. .|-+-+|++||+||-|.-.| |..|=..+.+.| + +-.|||-+ +.+...
T Consensus 10 yaPklvk~~~Gr~~v~T--kfsrLtGr~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~----~~~~i~--- 80 (717)
T COG4981 10 YAPKLVKLPDGRVKVST--KFSRLTGRSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEI----FTNAIE--- 80 (717)
T ss_pred hCcceEecCCCcEEEee--chhhhcCCCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHH----HHHHHH---
Confidence 34444444466655554 36677899999999998766 444433333333 1 12344433 322111
Q ss_pred hhhhccCCCCCEEEEecCCCHHHHHH------HHHH-HcCC--CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHH
Q 013813 149 EEFATCKEDRPLFVQFCANDPEILLN------AARR-VEPY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 219 (436)
Q Consensus 149 ~~~~~~~~e~plivQL~g~d~e~~~~------AA~~-v~~g--~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~a 219 (436)
+....-+.++-..++.+--||--+.- -.+. .+.| .|+|-|..|-|. .+...|+|+.
T Consensus 81 ql~~~lepG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~---------------le~A~ElI~~ 145 (717)
T COG4981 81 QLVSLLEPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPS---------------LEEAVELIEE 145 (717)
T ss_pred HHHhccCCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCc---------------HHHHHHHHHH
Confidence 11112234444444444444432221 1121 2345 489999988775 3667777777
Q ss_pred HhcccCccEE-EEeccCCChhhHHHHHHHHHHcCccEEEec--cCcccccCCCCCccCH--------HHHHHHHhhCCCc
Q 013813 220 LALNLNVPVS-CKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GRTRDEKDGKKFRADW--------NAIKAVKNALRIP 288 (436)
Q Consensus 220 v~~~~~iPVs-VKiRlg~~~~d~~~~ak~le~aG~d~I~VH--gRt~~~~~~~~g~ad~--------~~i~~ik~~~~iP 288 (436)
+.. .++|.. .| .| +++.+...++++.+..---|++| |....+ .-.| ....++++.-+|-
T Consensus 146 L~~-~G~~yv~fK--PG-tIeqI~svi~IAka~P~~pIilq~egGraGG------HHSweDld~llL~tYs~lR~~~NIv 215 (717)
T COG4981 146 LGD-DGFPYVAFK--PG-TIEQIRSVIRIAKANPTFPIILQWEGGRAGG------HHSWEDLDDLLLATYSELRSRDNIV 215 (717)
T ss_pred Hhh-cCceeEEec--CC-cHHHHHHHHHHHhcCCCCceEEEEecCccCC------ccchhhcccHHHHHHHHHhcCCCEE
Confidence 642 355543 34 33 34555556666666655555554 332221 2223 2245677778999
Q ss_pred EEEccCCCCHHHHHHHHHh-----c-----CcceeeeehHHhhCCc
Q 013813 289 VLANGNVRHMEDVQKCLEE-----T-----GCEGVLSAESLLENPA 324 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~-----t-----GaDgVmIGRgal~nP~ 324 (436)
++..|||.+++++..+|.- . -+||+.+|+++|.--.
T Consensus 216 l~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 216 LCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred EEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhh
Confidence 9999999999999998841 1 4899999999987544
No 352
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.15 E-value=0.7 Score=47.23 Aligned_cols=129 Identities=18% Similarity=0.254 Sum_probs=86.4
Q ss_pred CCEEEEecCCCH-HHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEecc
Q 013813 158 RPLFVQFCANDP-EILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRV 234 (436)
Q Consensus 158 ~plivQL~g~d~-e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRl 234 (436)
.|+...+...++ +++.+.+ +.++.||..+-+..| | +.-.+.++++++.++ +.+.+-..-
T Consensus 126 v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~-~-----------------~~d~~~l~~vr~~~g~~~l~lDaN~ 187 (354)
T cd03317 126 IPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK-P-----------------GWDVEPLKAVRERFPDIPLMADANS 187 (354)
T ss_pred EEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC-h-----------------HHHHHHHHHHHHHCCCCeEEEECCC
Confidence 345444544443 6666555 456779999888763 1 122345666666653 334444334
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+|+.+++. +++.+++.++.+| ++.. .+.||+..+.+++..++||.+.=.+.+.+++.++++...+|.|.
T Consensus 188 ~~~~~~a~-~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ 256 (354)
T cd03317 188 AYTLADIP-LLKRLDEYGLLMI-------EQPL---AADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIIN 256 (354)
T ss_pred CCCHHHHH-HHHHhhcCCccEE-------ECCC---ChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEE
Confidence 67777764 7888888887766 2211 13468888999999999999888899999999999986778876
Q ss_pred e
Q 013813 315 S 315 (436)
Q Consensus 315 I 315 (436)
+
T Consensus 257 i 257 (354)
T cd03317 257 I 257 (354)
T ss_pred e
Confidence 5
No 353
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.13 E-value=0.15 Score=47.87 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=65.7
Q ss_pred HHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEE--EEeccCC---ChhhHHHHHH
Q 013813 173 LNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--CKIRVFP---NLQDTIKYAK 246 (436)
Q Consensus 173 ~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVs--VKiRlg~---~~~d~~~~ak 246 (436)
.+.|+.+ +.|+.+|-+|- .+-++++++.+++||. +|-.... .+.-+.+-++
T Consensus 2 ~~mA~Aa~~gGA~giR~~~-----------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~ 58 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG-----------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVD 58 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES-----------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHH
T ss_pred HHHHHHHHHCCceEEEcCC-----------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHH
Confidence 3445444 34788999881 1335678889999985 4532211 1112344567
Q ss_pred HHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 247 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 247 ~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+.++|+|.|.+.+-.+.- + ..-.++++++++.. +..-.+|.|.+++..+.+. |+|.|.
T Consensus 59 ~l~~aGadIIAlDaT~R~R----p-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~-G~D~I~ 117 (192)
T PF04131_consen 59 ALAEAGADIIALDATDRPR----P-ETLEELIREIKEKY---QLVMADISTLEEAINAAEL-GFDIIG 117 (192)
T ss_dssp HHHHCT-SEEEEE-SSSS-----S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHT-T-SEEE
T ss_pred HHHHcCCCEEEEecCCCCC----C-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHc-CCCEEE
Confidence 7889999999886533321 1 22357888998876 5566799999999999986 999874
No 354
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=95.11 E-value=0.23 Score=48.81 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=88.3
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
.+-|++--+. ++++...+++ .+|.+.| |+.++++.+++. ++. .++.||-+|=-.+
T Consensus 72 ~glpvvTeV~--~~~~~~~vae----~vDilQI--------------gArn~rn~~LL~----a~g-~t~kpV~lKrG~~ 126 (258)
T TIGR01362 72 FGVPILTDVH--ESSQCEPVAE----VVDIIQI--------------PAFLCRQTDLLV----AAA-KTGRIVNVKKGQF 126 (258)
T ss_pred hCCceEEEeC--CHHHHHHHHh----hCcEEEe--------------CchhcchHHHHH----HHh-ccCCeEEecCCCc
Confidence 4667777653 4455444443 3677765 677788765544 443 3589999996556
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHHHHhhCCCcEEEc---------------cCCCCH-
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLAN---------------GNVRHM- 298 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ik~~~~iPVian---------------GGI~s~- 298 (436)
.+.++....++.+.+.|-..|.+.-|-.. . ++. ...|+..+..+++. ++|||.- ||.+..
T Consensus 127 ~t~~e~l~aaeyi~~~Gn~~viLcERG~t-f-~y~r~~~D~~~ip~~k~~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~v 203 (258)
T TIGR01362 127 LSPWDMKNVVEKVLSTGNKNILLCERGTS-F-GYNNLVVDMRSLPIMREL-GCPVIFDATHSVQQPGGLGGASGGLREFV 203 (258)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeCCCC-c-CCCCcccchhhhHHHHhc-CCCEEEeCCccccCCCCCCCCCCCcHHHH
Confidence 78888888999999999998888655442 1 222 24688888888875 8999863 444432
Q ss_pred -HHHHHHHHhcCcceeeee
Q 013813 299 -EDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 299 -eda~~~l~~tGaDgVmIG 316 (436)
.-++..+. .|+||+||=
T Consensus 204 ~~la~AAvA-~GaDGl~iE 221 (258)
T TIGR01362 204 PTLARAAVA-VGIDGLFME 221 (258)
T ss_pred HHHHHHHHH-hCCCEEEEE
Confidence 22233444 499999986
No 355
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=95.11 E-value=1.7 Score=41.58 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=103.6
Q ss_pred CCCcHHHHHHHHHhCCCe---EEeCcccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEE
Q 013813 112 DNSELPFRMLCRRYGAEA---AYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDI 188 (436)
Q Consensus 112 gvtd~~fR~l~~~~Ga~l---~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdL 188 (436)
|+|.+.=-..+.++|+++ ++-+- |.|..... ..+.. ...-++ .+.+.=+...+.+++.+.+.. -+.|.|.|
T Consensus 8 Glt~~eda~~a~~~gad~iG~If~~~-SpR~Vs~~-~a~~i-~~~v~~-~~~VgVf~n~~~~~i~~i~~~--~~ld~VQl 81 (208)
T COG0135 8 GLTRLEDAKAAAKAGADYIGFIFVPK-SPRYVSPE-QAREI-ASAVPK-VKVVGVFVNESIEEILEIAEE--LGLDAVQL 81 (208)
T ss_pred CCCCHHHHHHHHHcCCCEEEEEEcCC-CCCcCCHH-HHHHH-HHhCCC-CCEEEEECCCCHHHHHHHHHh--cCCCEEEE
Confidence 555555456777888864 33222 33332211 11111 111111 333333445566665555432 25799999
Q ss_pred ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 189 NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 189 N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
|-- .+++++.++ +...++||+-=++.....+ .........-++.+.+-....++. +
T Consensus 82 HG~----------------e~~~~~~~l----~~~~~~~v~kai~v~~~~~---~~~~~~~~~~~d~~LlDa~~~~~~-G 137 (208)
T COG0135 82 HGD----------------EDPEYIDQL----KEELGVPVIKAISVSEEGD---LELAAREEGPVDAILLDAKVPGLP-G 137 (208)
T ss_pred CCC----------------CCHHHHHHH----HhhcCCceEEEEEeCCccc---hhhhhhccCCccEEEEcCCCCCCC-C
Confidence 921 345554444 4444677766665543322 112223445588888866554322 3
Q ss_pred CCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 269 KKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 269 ~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
++| ..||+.+... ....|++..||++ ++.+.++++.....+|=+.+|.=.+|
T Consensus 138 GtG~~fDW~~l~~~--~~~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 138 GTGQTFDWNLLPKL--RLSKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred CCCcEECHHHhccc--cccCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccCC
Confidence 333 5799988776 4678899999996 89999999974449999998887777
No 356
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=95.10 E-value=0.19 Score=49.76 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=54.8
Q ss_pred HHHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcE
Q 013813 214 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 289 (436)
Q Consensus 214 ~eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPV 289 (436)
..-++.+++..+ .++.|=++ +. +-++.+.++|+|+|-+-. ...+.++++.+.+ .+||
T Consensus 165 ~~av~~~r~~~~~~~~Igvev~---t~----eea~~A~~~gaDyI~ld~------------~~~e~lk~~v~~~~~~ipi 225 (265)
T TIGR00078 165 EKAVKRARAAAPFALKIEVEVE---SL----EEAEEAAEAGADIIMLDN------------MKPEEIKEAVQLLKGRVLL 225 (265)
T ss_pred HHHHHHHHHhCCCCCeEEEEeC---CH----HHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhcCCCcE
Confidence 344555665553 33433322 22 335566789999997732 2225566666544 3899
Q ss_pred EEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 290 LANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 290 ianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
++.|||+ .+.+.++.+ +|+|++.+|.
T Consensus 226 ~AsGGI~-~~ni~~~a~-~Gvd~Isvga 251 (265)
T TIGR00078 226 EASGGIT-LDNLEEYAE-TGVDVISSGA 251 (265)
T ss_pred EEECCCC-HHHHHHHHH-cCCCEEEeCH
Confidence 9999995 899999887 5999999953
No 357
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.99 E-value=0.1 Score=49.39 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=63.5
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
++..=+|. .+.+++.++++.+.+.|+..|-|+-|+.. .++.|+.+++...--+++.|.|.|.++++++++
T Consensus 9 ~iiaVir~-~~~~~a~~~~~al~~gGi~~iEiT~~t~~---------a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~ 78 (196)
T PF01081_consen 9 KIIAVIRG-DDPEDAVPIAEALIEGGIRAIEITLRTPN---------ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIA 78 (196)
T ss_dssp SEEEEETT-SSGGGHHHHHHHHHHTT--EEEEETTSTT---------HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHH
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEecCCcc---------HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHH
Confidence 34444444 45689999999999999999999888632 257888888776556899999999999999999
Q ss_pred hcCcceeeeehHHhhCCccchhhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
. ||+.++.= --||.+.+..+
T Consensus 79 a-GA~FivSP---~~~~~v~~~~~ 98 (196)
T PF01081_consen 79 A-GAQFIVSP---GFDPEVIEYAR 98 (196)
T ss_dssp H-T-SEEEES---S--HHHHHHHH
T ss_pred c-CCCEEECC---CCCHHHHHHHH
Confidence 7 99998753 25666665544
No 358
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.97 E-value=0.13 Score=49.13 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=69.3
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
++..=+|. .+.++..++++.+.+.|+..|-|.-++.. .++.|+++++...--+++.|-|.|.++++++++
T Consensus 9 ~liaVlr~-~~~e~a~~~~~al~~~Gi~~iEit~~t~~---------a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~ 78 (204)
T TIGR01182 9 KIVPVIRI-DDVDDALPLAKALIEGGLRVLEVTLRTPV---------ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVD 78 (204)
T ss_pred CEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEeCCCcc---------HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 44444554 46788999999999999999999877632 357788998766546799999999999999999
Q ss_pred hcCcceeeeehHHhhCCccchhhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
. |++.++.= + .||.+....+
T Consensus 79 a-GA~FivsP-~--~~~~v~~~~~ 98 (204)
T TIGR01182 79 A-GAQFIVSP-G--LTPELAKHAQ 98 (204)
T ss_pred c-CCCEEECC-C--CCHHHHHHHH
Confidence 6 99998532 2 2777776554
No 359
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=94.97 E-value=0.77 Score=45.94 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=70.0
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cCC--C----------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VFP--N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg~--~----------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad 274 (436)
.+.+..+++++..+. .+++|-.=+- +|. + ..++.+..+.+++.|+|.+.|.-.|..+.+......|
T Consensus 110 eNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ld 188 (282)
T TIGR01858 110 QNVKLVKEVVDFCHR-QDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLD 188 (282)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccC
Confidence 355666667666543 3555544431 110 0 1233444455668999999875555444443334689
Q ss_pred HHHHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 275 WNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 275 ~~~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
|+.+++|++.+++|++.-||=..+ ++++++.+. |+.-|=|++.+
T Consensus 189 f~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi~T~l 233 (282)
T TIGR01858 189 FDRLAEIREVVDVPLVLHGASDVPDEDVRRTIEL-GICKVNVATEL 233 (282)
T ss_pred HHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHc-CCeEEEeCcHH
Confidence 999999999999999988865444 556667764 88888777655
No 360
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=94.93 E-value=1.2 Score=45.47 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=89.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--ccEEEEeccCC
Q 013813 159 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--iPVsVKiRlg~ 236 (436)
|+...+...+++.+.+.++.. .|+..+-+..|= .| ++++.-.+.|+++++.++ +.+.+-..-+|
T Consensus 80 p~~~tv~~~~~e~~~~~~~~~-~G~~~~KvKVg~---------~~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~w 145 (327)
T PRK02901 80 PVNATVPAVDAAQVPEVLARF-PGCRTAKVKVAE---------PG----QTLADDVARVNAVRDALGPDGRVRVDANGGW 145 (327)
T ss_pred EeeEEeCCCCHHHHHHHHHHh-CCCCEEEEEECC---------CC----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 334333444666554444322 477777777651 12 234455566677777763 45555555578
Q ss_pred ChhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 237 NLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 237 ~~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
+.++++.+++.+ ++.++.+| ++. . .+++..+.+++.+++||.+.=.+.+.+|..++++..++|.+++
T Consensus 146 s~~~Ai~~~~~L~e~~~l~~i-------EqP--~---~~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~i 213 (327)
T PRK02901 146 SVDEAVAAARALDADGPLEYV-------EQP--C---ATVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVL 213 (327)
T ss_pred CHHHHHHHHHHhhhccCceEE-------ecC--C---CCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 999999999999 67777776 221 1 1367788899999999988888999999999999888898875
Q ss_pred e
Q 013813 316 A 316 (436)
Q Consensus 316 G 316 (436)
-
T Consensus 214 k 214 (327)
T PRK02901 214 K 214 (327)
T ss_pred C
Confidence 4
No 361
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.88 E-value=0.3 Score=51.19 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.++.+.++.+.++|+|.|+|-.-... +..-++.++.+++.. +++ +..|+|.|.++++.+++. |+|+|.+|
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~~a-GaD~I~vG 222 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGH------STRIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLISV-GADCLKVG 222 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHHHc-CCCEEEEC
Confidence 34677889999999999988432211 123357788998875 555 567899999999999986 99999887
No 362
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.88 E-value=0.2 Score=47.72 Aligned_cols=90 Identities=18% Similarity=0.307 Sum_probs=69.3
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
++..=+|. .+.+++.++++.+.+.|+..|-|.-++.. ..+.|+++++..+--+++.|-|.|.++++++++
T Consensus 5 ~vv~Vir~-~~~~~a~~ia~al~~gGi~~iEit~~tp~---------a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~ 74 (201)
T PRK06015 5 PVIPVLLI-DDVEHAVPLARALAAGGLPAIEITLRTPA---------ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAK 74 (201)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCcc---------HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHH
Confidence 44444553 56789999999999999999999877632 357888888776556899999999999999999
Q ss_pred hcCcceeeeehHHhhCCccchhhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
. |++.++.= -.||.+.+..+
T Consensus 75 a-GA~FivSP---~~~~~vi~~a~ 94 (201)
T PRK06015 75 A-GSRFIVSP---GTTQELLAAAN 94 (201)
T ss_pred c-CCCEEECC---CCCHHHHHHHH
Confidence 7 99998742 25666665444
No 363
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=94.88 E-value=0.77 Score=47.60 Aligned_cols=142 Identities=14% Similarity=0.161 Sum_probs=90.2
Q ss_pred CCCCCEEEEec---CCCHHHHHHHHHHH-cCCCcEEEE--ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--c
Q 013813 155 KEDRPLFVQFC---ANDPEILLNAARRV-EPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--V 226 (436)
Q Consensus 155 ~~e~plivQL~---g~d~e~~~~AA~~v-~~g~D~IdL--N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~--i 226 (436)
-.++||+..+. |-+++.+++.+..+ ..|+|+|-- |+|.+.- ..+.++.+.+.+.++...+.++ +
T Consensus 123 v~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~--------~p~~eRv~~v~~av~~a~~eTG~~~ 194 (364)
T cd08210 123 IPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPF--------APFEERVKACQEAVAEANAETGGRT 194 (364)
T ss_pred CCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccC--------CCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 45889886653 77999999999654 568899833 2432221 1122344555666666665554 4
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEc----cC-------
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLAN----GN------- 294 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVian----GG------- 294 (436)
++.+- +..+.++..+-++.++++|++.+-|-.-+ +-|..+..+++... +||.+- |-
T Consensus 195 ~y~~N--ita~~~em~~ra~~a~~~Ga~~vMv~~~~----------~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~ 262 (364)
T cd08210 195 LYAPN--VTGPPTQLLERARFAKEAGAGGVLIAPGL----------TGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDG 262 (364)
T ss_pred eEEEe--cCCCHHHHHHHHHHHHHcCCCEEEeeccc----------chHHHHHHHHhcCCCcEEEEccccccccccCCCc
Confidence 55555 43446688899999999999998775332 22456667777767 888665 22
Q ss_pred CCCHHHHHHHHHhcCcceeeee
Q 013813 295 VRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIG 316 (436)
|...--..++.+..|+|.++++
T Consensus 263 is~~~~~~kl~RlaGad~~~~~ 284 (364)
T cd08210 263 ISHALLFGTLFRLAGADAVIFP 284 (364)
T ss_pred ccHHHHHHHHHHHhCCCEEEeC
Confidence 2222235666777799987654
No 364
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.85 E-value=0.23 Score=47.05 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=75.7
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
.+++.=|.+.++++..+.++.+ +.|+..||+.+-.|.. .++++.+++.. ++-|.+. .
T Consensus 8 ~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a------------------~~~I~~l~~~~p~~~vGAG--T- 66 (196)
T PF01081_consen 8 NKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNA------------------LEAIEALRKEFPDLLVGAG--T- 66 (196)
T ss_dssp HSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTH------------------HHHHHHHHHHHTTSEEEEE--S-
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccH------------------HHHHHHHHHHCCCCeeEEE--e-
Confidence 4678888999999999999765 5689999999865531 22333333322 1222222 1
Q ss_pred CChhhHHHHHHHHHHcCccEE-----------------------------------------EeccCcccccCCCCCccC
Q 013813 236 PNLQDTIKYAKMLEDAGCSLL-----------------------------------------AVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I-----------------------------------------~VHgRt~~~~~~~~g~ad 274 (436)
..+ .+-++.+.++|++++ -+..-.. .-
T Consensus 67 --V~~-~e~a~~a~~aGA~FivSP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~---------~G 134 (196)
T PF01081_consen 67 --VLT-AEQAEAAIAAGAQFIVSPGFDPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGA---------LG 134 (196)
T ss_dssp ----S-HHHHHHHHHHT-SEEEESS--HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTT---------TT
T ss_pred --ccC-HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchh---------cC
Confidence 111 112333344444444 3322111 11
Q ss_pred -HHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 275 -WNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 275 -~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
..+++.++.- .+++++..|||.- +.+.++++. |+.+|.+|+.+..+
T Consensus 135 G~~~ik~l~~p~p~~~~~ptGGV~~-~N~~~~l~a-g~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 135 GPSYIKALRGPFPDLPFMPTGGVNP-DNLAEYLKA-GAVAVGGGSWLFPK 182 (196)
T ss_dssp HHHHHHHHHTTTTT-EEEEBSS--T-TTHHHHHTS-TTBSEEEESGGGSH
T ss_pred cHHHHHHHhccCCCCeEEEcCCCCH-HHHHHHHhC-CCEEEEECchhcCH
Confidence 4778888874 4799999999985 889999986 99999999766543
No 365
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.83 E-value=0.087 Score=55.99 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+-++.+.++|++.|.|..-... ...-++.|+.+++. .++||++ |+|.|.++++.+++. |||+|-+|
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~------~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~a-Gad~i~vg 293 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGH------SIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDA-GADGLRVG 293 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCc------HhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHh-CCCEEEEC
Confidence 4556678889999999988432211 02346889999987 5899988 999999999999986 99999765
No 366
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.83 E-value=0.33 Score=46.56 Aligned_cols=99 Identities=27% Similarity=0.366 Sum_probs=72.1
Q ss_pred HHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccC
Q 013813 215 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 294 (436)
Q Consensus 215 eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGG 294 (436)
++++.+.+. ++..=+| +.+.+++.++++.+.+.|++.|-|.-++. ...+.|+.+++...--+++.|-
T Consensus 7 ~~~~~l~~~---~~iaV~r-~~~~~~a~~i~~al~~~Gi~~iEitl~~~---------~~~~~I~~l~~~~p~~~IGAGT 73 (212)
T PRK05718 7 SIEEILRAG---PVVPVIV-INKLEDAVPLAKALVAGGLPVLEVTLRTP---------AALEAIRLIAKEVPEALIGAGT 73 (212)
T ss_pred HHHHHHHHC---CEEEEEE-cCCHHHHHHHHHHHHHcCCCEEEEecCCc---------cHHHHHHHHHHHCCCCEEEEee
Confidence 444444433 4444455 45678999999999999999999985543 2357788888766556899999
Q ss_pred CCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 295 VRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
|.+.++++.+++. |++.++.= -.||.+.+..+
T Consensus 74 Vl~~~~a~~a~~a-GA~FivsP---~~~~~vi~~a~ 105 (212)
T PRK05718 74 VLNPEQLAQAIEA-GAQFIVSP---GLTPPLLKAAQ 105 (212)
T ss_pred ccCHHHHHHHHHc-CCCEEECC---CCCHHHHHHHH
Confidence 9999999999997 99988742 24556655444
No 367
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.78 E-value=0.41 Score=47.22 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=88.5
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc
Q 013813 155 KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 234 (436)
Q Consensus 155 ~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl 234 (436)
+.+-|++--+. ++++...+++ .+|.+.| |+.++++.+++. ++. .++.||-+|=-.
T Consensus 79 ~~GlpvvTeV~--~~~~~~~v~~----~~DilQI--------------gArn~rn~~LL~----a~g-~t~kpV~lKrG~ 133 (264)
T PRK05198 79 TFGVPVLTDVH--EPEQAAPVAE----VVDVLQI--------------PAFLCRQTDLLV----AAA-KTGKVVNIKKGQ 133 (264)
T ss_pred HHCCceEEEeC--CHHHHHHHHh----hCcEEEE--------------CchhcchHHHHH----HHh-ccCCeEEecCCC
Confidence 34667777653 4555444443 4677765 677788875554 443 458999999655
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHHHHhhCCCcEEEc---------------cCCCCH
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLAN---------------GNVRHM 298 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ik~~~~iPVian---------------GGI~s~ 298 (436)
+.+.++....++.+.+.|-..|.+.-|-.. . ++. ...|+..+..+++ .++|||.- ||-++.
T Consensus 134 ~~t~~e~~~aaeyi~~~Gn~~vilcERG~t-f-~y~r~~~D~~~vp~~k~-~~lPVi~DpSHsvq~pg~~~~~s~G~r~~ 210 (264)
T PRK05198 134 FLAPWDMKNVVDKVREAGNDKIILCERGTS-F-GYNNLVVDMRGLPIMRE-TGAPVIFDATHSVQLPGGQGGSSGGQREF 210 (264)
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-c-CCCCeeechhhhHHHhh-CCCCEEEeCCccccCCCCCCCCCCCcHHH
Confidence 678889888999999999999988666442 2 332 2368888888887 45999863 444432
Q ss_pred --HHHHHHHHhcCcceeeee
Q 013813 299 --EDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 299 --eda~~~l~~tGaDgVmIG 316 (436)
.-++..+. .|+||+||=
T Consensus 211 v~~la~AAvA-~GadGl~iE 229 (264)
T PRK05198 211 VPVLARAAVA-VGVAGLFIE 229 (264)
T ss_pred HHHHHHHHHH-cCCCEEEEE
Confidence 22234444 499999986
No 368
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=94.77 E-value=0.31 Score=50.76 Aligned_cols=43 Identities=14% Similarity=0.418 Sum_probs=37.6
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+.|+.+++..+.||+. .||.+.+|++.+++. |+|+|.++
T Consensus 231 ~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~~~-Gvd~I~Vs 273 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVI-KGILDPEDARDAVRF-GADGIVVS 273 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHHhC-CCCEEEEC
Confidence 46899999999999999775 567999999999986 99999875
No 369
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=94.71 E-value=0.78 Score=48.73 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=85.7
Q ss_pred CHHHHHHHH-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ 244 (436)
+++++++-| +.++ .||..+-|-.|-+ +++.-.+.|+++++.+ ++.+.|-..-+|+.++++.+
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt~~~Ai~~ 244 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFPQARITLDPNGAWSLDEAIAL 244 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 577776555 4454 4999998875421 1234456677777665 34566665557888999999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccC----HHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad----~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
++.+++. +.+| ++... +-| ++..+++++.+++||.+.=.+.+.+++.++++...+|.++
T Consensus 245 ~~~Le~~-~~~i-------EePv~---~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~ 307 (441)
T TIGR03247 245 CKDLKGV-LAYA-------EDPCG---AEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPL 307 (441)
T ss_pred HHHhhhh-hceE-------eCCCC---cccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEe
Confidence 9999986 5543 22111 123 7888999999999999887899999999999987788755
No 370
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.70 E-value=0.25 Score=49.44 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEecc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG 260 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg 260 (436)
..+.+.+.++.|...+++||++.+-.|.+..+....++.+.++|+.+|.+-.
T Consensus 62 ~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iED 113 (285)
T TIGR02320 62 SWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIED 113 (285)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 3455666788888889999999998886667778889999999999999943
No 371
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=94.69 E-value=0.14 Score=52.96 Aligned_cols=89 Identities=21% Similarity=0.355 Sum_probs=63.2
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEecc-------Cccc----------------------cc----------
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRD----------------------EK---------- 266 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHg-------Rt~~----------------------~~---------- 266 (436)
.|...-+-...+.+.+.+++++++++|+++|.||- |.++ +.
T Consensus 110 ~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 189 (356)
T PF01070_consen 110 GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNE 189 (356)
T ss_dssp SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----
T ss_pred CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccc
Confidence 56666655556677788899999999999998842 1000 00
Q ss_pred ----------------CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 267 ----------------DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 267 ----------------~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.......+|+.|+.+++..++|||.=|= .+.+|++.+.+. |+|+|.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv-~~~~da~~~~~~-G~~~i~vs 253 (356)
T PF01070_consen 190 APPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV-LSPEDAKRAVDA-GVDGIDVS 253 (356)
T ss_dssp CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE--SHHHHHHHHHT-T-SEEEEE
T ss_pred cccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec-ccHHHHHHHHhc-CCCEEEec
Confidence 0001135799999999999999998775 889999999986 99999887
No 372
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.64 E-value=0.46 Score=46.81 Aligned_cols=126 Identities=18% Similarity=0.269 Sum_probs=75.7
Q ss_pred HHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCcc-EEEEeccC---CChhhHHHHH-HHHH
Q 013813 176 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-VSCKIRVF---PNLQDTIKYA-KMLE 249 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iP-VsVKiRlg---~~~~d~~~~a-k~le 249 (436)
|++++ .|+|.|= .|.....+.-| |-....-..+.+...+++|++.++.| |++-+-.| .+.+++++.+ +.++
T Consensus 25 A~l~e~aG~d~i~--vGds~~~~~lG-~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~ 101 (254)
T cd06557 25 AKLADEAGVDVIL--VGDSLGMVVLG-YDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMK 101 (254)
T ss_pred HHHHHHcCCCEEE--ECHHHHHHHcC-CCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHH
Confidence 34444 4999994 46554444322 44444556788888888999899999 77776423 2345555554 4455
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-----------EccCCC----CHHHHHHHH------Hhc
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-----------ANGNVR----HMEDVQKCL------EET 308 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-----------anGGI~----s~eda~~~l------~~t 308 (436)
++|+++|.+-+.. -..+.|+.+++ .++||+ ..||.. +.+.+++++ ++.
T Consensus 102 ~aGa~aVkiEd~~----------~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~A 170 (254)
T cd06557 102 EAGADAVKLEGGA----------EVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEA 170 (254)
T ss_pred HhCCeEEEEcCcH----------HHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHC
Confidence 6999999987641 01233444443 378888 566542 343233332 234
Q ss_pred Ccceeee
Q 013813 309 GCEGVLS 315 (436)
Q Consensus 309 GaDgVmI 315 (436)
|||++.+
T Consensus 171 GA~~i~l 177 (254)
T cd06557 171 GAFALVL 177 (254)
T ss_pred CCCEEEE
Confidence 9998875
No 373
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.62 E-value=0.1 Score=55.96 Aligned_cols=68 Identities=38% Similarity=0.481 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHcCccEEEe---ccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 239 QDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~V---HgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+..+.++.|.++|++.|.+ ||+.. .-.+.++.|++. +++|||+ |.+.|.+.++.+++. |||+|-
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~---------~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~-G~d~i~ 292 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQV---------KMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEA-GANIIK 292 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcH---------HHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHh-CCCEEE
Confidence 35567888999999999988 44331 235788999986 4899999 889999999999986 999987
Q ss_pred eeh
Q 013813 315 SAE 317 (436)
Q Consensus 315 IGR 317 (436)
||=
T Consensus 293 vg~ 295 (475)
T TIGR01303 293 VGV 295 (475)
T ss_pred ECC
Confidence 653
No 374
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=94.62 E-value=1.2 Score=44.70 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cC-C-C----------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VF-P-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg-~-~----------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad 274 (436)
++.+..+++++..+. .++.|-.=+- +| . + ..++.+..+.+++.|+|.+.|.-.|..+.|......|
T Consensus 112 eNi~~T~evv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld 190 (286)
T PRK12738 112 ENVKLVKSVVDFCHS-QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKID 190 (286)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCC
Confidence 455667777776553 3555444321 11 0 0 1244455555668899999875555444443334689
Q ss_pred HHHHHHHHhhCCCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHH
Q 013813 275 WNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 275 ~~~i~~ik~~~~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRga 319 (436)
|+.+++|++.+++|++.-||=.. .++++++.+. |+.-|=|++.+
T Consensus 191 fd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~-GI~KiNi~T~l 235 (286)
T PRK12738 191 FQRLAEIREVVDVPLVLHGASDVPDEFVRRTIEL-GVTKVNVATEL 235 (286)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEeCcHH
Confidence 99999999999999998886433 4667777774 88888777654
No 375
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.56 E-value=0.33 Score=48.18 Aligned_cols=89 Identities=18% Similarity=0.322 Sum_probs=55.4
Q ss_pred HHHHHHhcccC--ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC----CCc
Q 013813 215 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL----RIP 288 (436)
Q Consensus 215 eIv~av~~~~~--iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~----~iP 288 (436)
+-++.+++..+ .++.|-++ +.++ +..+.++|+|+|-+-... .+.++++.+.+ ++|
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~---t~ee----a~~A~~~gaD~I~ld~~~------------~e~l~~~v~~i~~~~~i~ 229 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVE---TLEE----AEEALEAGADIIMLDNMS------------PEELKEAVKLLKGLPRVL 229 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecC---CHHH----HHHHHHcCCCEEEECCCC------------HHHHHHHHHHhccCCCeE
Confidence 44566666553 33433321 2233 344457899999884322 13344444433 789
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|.+.|||+ .+.+.++.+ +|+|+|.+|.-...-|+
T Consensus 230 i~asGGIt-~~ni~~~a~-~Gad~Isvgal~~s~~~ 263 (269)
T cd01568 230 LEASGGIT-LENIRAYAE-TGVDVISTGALTHSAPA 263 (269)
T ss_pred EEEECCCC-HHHHHHHHH-cCCCEEEEcHHHcCCCc
Confidence 99999997 788998887 59999999754444433
No 376
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=94.55 E-value=1.2 Score=44.61 Aligned_cols=110 Identities=23% Similarity=0.286 Sum_probs=69.3
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cC-C--C---------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VF-P--N---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg-~--~---------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad 274 (436)
.+.+..+++++..+. .++.|-.=+- +| . + ..++.+..+.+++.|+|.+.|.-.|..+.+......|
T Consensus 112 eNi~~T~~vv~~Ah~-~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld 190 (284)
T PRK12737 112 ENIAIVKEVVEFCHR-YDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLD 190 (284)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCC
Confidence 345566666666543 3555444321 11 0 0 1234454555667999999774444443333333579
Q ss_pred HHHHHHHHhhCCCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHH
Q 013813 275 WNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 275 ~~~i~~ik~~~~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRga 319 (436)
|+.+++|++.+++|++.-||=.. .++++++++. |+.-|=|++.+
T Consensus 191 ~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~-Gi~KiNi~T~l 235 (284)
T PRK12737 191 FERLAEIREKVSIPLVLHGASGVPDEDVKKAISL-GICKVNVATEL 235 (284)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHC-CCeEEEeCcHH
Confidence 99999999999999998886444 4566777764 88888888764
No 377
>PLN02363 phosphoribosylanthranilate isomerase
Probab=94.50 E-value=1 Score=44.47 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=36.4
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
..||+.+....-....|++..|||. ++.+.++++..+..||=+.+|.=..|-
T Consensus 185 t~DW~~l~~~~~~~~~p~iLAGGL~-peNV~~ai~~~~P~GVDVsSGVE~~pG 236 (256)
T PLN02363 185 GFNWQNFKLPSVRSRNGWLLAGGLT-PENVHEAVSLLKPTGVDVSSGICGPDG 236 (256)
T ss_pred ccCHHHhcccccccCCCEEEECCCC-HHHHHHHHHhcCCcEEEeCCcccCCCC
Confidence 3578765411101246899999996 788888888778888888877755554
No 378
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.50 E-value=4.6 Score=38.47 Aligned_cols=174 Identities=10% Similarity=0.112 Sum_probs=91.6
Q ss_pred CCCcHHHHHHHHHhCCCeEEeCc--ccchhhccChhhhhhhhhccCCCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEe
Q 013813 112 DNSELPFRMLCRRYGAEAAYTPM--LHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDIN 189 (436)
Q Consensus 112 gvtd~~fR~l~~~~Ga~l~~Tem--isa~~l~~~~~~~~~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN 189 (436)
|.|+..=-.+|.+.|+|++--=+ -|.+.+. .+..+ ......+.....+.=+...+++++.+.++ +.+.|.|.||
T Consensus 7 Git~~eda~~~~~~GaD~iGfIf~~~SpR~V~-~~~a~-~i~~~~~~~~~~VgVf~~~~~~~i~~~~~--~~~~d~vQLH 82 (207)
T PRK13958 7 GFTTIKDVTAASQLPIDAIGFIHYEKSKRHQT-ITQIK-KLASAVPNHIDKVCVVVNPDLTTIEHILS--NTSINTIQLH 82 (207)
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCcccCC-HHHHH-HHHHhCCCCCCEEEEEeCCCHHHHHHHHH--hCCCCEEEEC
Confidence 56666555788889998632111 1222221 11111 11121122222222234566777666554 2367999999
Q ss_pred cCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCC
Q 013813 190 LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 268 (436)
Q Consensus 190 ~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~ 268 (436)
-. .++++ ++.++... .+++.--++... . ....++.... .+|++.+.... .. .+
T Consensus 83 G~----------------e~~~~----~~~l~~~~~~~~iika~~~~~--~-~~~~~~~~~~-~~d~~LlDs~~-~~-~G 136 (207)
T PRK13958 83 GT----------------ESIDF----IQEIKKKYSSIKIIKALPADE--N-IIQNINKYKG-FVDLFIIDTPS-VS-YG 136 (207)
T ss_pred CC----------------CCHHH----HHHHhhcCCCceEEEEecccH--H-HHHHHHHHHh-hCCEEEEcCCC-CC-CC
Confidence 31 22333 33444332 355544444421 1 2222333322 47888887632 22 23
Q ss_pred CCC-ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH-hcCcceeeeehHH
Q 013813 269 KKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE-ETGCEGVLSAESL 319 (436)
Q Consensus 269 ~~g-~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~-~tGaDgVmIGRga 319 (436)
++| ..||+.++.+ ...|++..|||+ ++.+.+++. ..+..||=+.+|.
T Consensus 137 GtG~~~dw~~~~~~---~~~p~iLAGGL~-peNV~~a~~~~~~p~gVDvsSGV 185 (207)
T PRK13958 137 GTGQTYDWTILKHI---KDIPYLIAGGIN-SENIQTVEQLKLSHQGYDIASGI 185 (207)
T ss_pred cCCcEeChHHhhhc---cCCCEEEECCCC-HHHHHHHHhcCCCCCEEEccccc
Confidence 444 5799988765 346999999996 677777664 3466777776665
No 379
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=94.42 E-value=1.4 Score=44.15 Aligned_cols=111 Identities=22% Similarity=0.301 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cC-C--C---------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VF-P--N---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg-~--~---------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad 274 (436)
.|-+..+++++..+. .++.|-.=+- +| . + ..++.+..+.+++.|+|.+.|.-.|..+.+......|
T Consensus 112 eNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld 190 (284)
T PRK09195 112 QNISLVKEVVDFCHR-FDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLD 190 (284)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCC
Confidence 355566667666543 3555544331 11 0 0 1234444455568899999774444433333333589
Q ss_pred HHHHHHHHhhCCCcEEEccCCCC-HHHHHHHHHhcCcceeeeehHHh
Q 013813 275 WNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 275 ~~~i~~ik~~~~iPVianGGI~s-~eda~~~l~~tGaDgVmIGRgal 320 (436)
|+.+++|++.+++|++.-||=.. .++++++++. |+.-|=|++.+.
T Consensus 191 ~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~-Gi~KiNi~T~l~ 236 (284)
T PRK09195 191 FDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKL-GICKVNVATELK 236 (284)
T ss_pred HHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHc-CCeEEEeCcHHH
Confidence 99999999999999998875333 4667777775 898888887664
No 380
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.41 E-value=0.82 Score=43.56 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC-----CChhhH
Q 013813 168 DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-----PNLQDT 241 (436)
Q Consensus 168 d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg-----~~~~d~ 241 (436)
++++..+.++.+. .|+.++.++ . .+.++++++.+++||....+-. .-....
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~ 77 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPT 77 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEecCCCCCCceECCC
Confidence 4566777776654 478888863 0 3566777777889987444311 001112
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
.+.++.+.++|+|.|++-..... .. .+....++++.+++..+++++. ++.+.+++.++.+. |+|.+.++
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~-~p--~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~~-G~d~i~~~ 146 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRP-RP--DGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQKL-GFDFIGTT 146 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-CC--CCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHc-CCCEEEcC
Confidence 35678889999998877544211 00 0011235566666535677774 67899999887765 99998764
No 381
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.38 E-value=0.36 Score=48.16 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.++|+|+|-+- ....+.++++.+.. ++|+++.|||+ .+.+.++.+ +|+|+|.+|.-.
T Consensus 202 a~eA~~~gaD~I~LD------------~~~~e~l~~~v~~~~~~i~leAsGGIt-~~ni~~~a~-tGvD~Isvg~lt 264 (277)
T PRK05742 202 LRQALAAGADIVMLD------------ELSLDDMREAVRLTAGRAKLEASGGIN-ESTLRVIAE-TGVDYISIGAMT 264 (277)
T ss_pred HHHHHHcCCCEEEEC------------CCCHHHHHHHHHHhCCCCcEEEECCCC-HHHHHHHHH-cCCCEEEEChhh
Confidence 555668999999662 12345566666654 89999999995 899999887 699999999643
No 382
>PLN02334 ribulose-phosphate 3-epimerase
Probab=94.35 E-value=1.5 Score=42.10 Aligned_cols=136 Identities=21% Similarity=0.286 Sum_probs=77.0
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 158 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
-.+..+++..+...+.+-++.+. .|++.|.+.. ..+.| ..+..+--++++++++.++.++.|-+=+
T Consensus 8 ~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~-------~d~~f----~~~~~~g~~~~~~l~~~~~~~~~vhlmv-- 74 (229)
T PLN02334 8 AIIAPSILSADFANLAEEAKRVLDAGADWLHVDV-------MDGHF----VPNLTIGPPVVKALRKHTDAPLDCHLMV-- 74 (229)
T ss_pred ceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEec-------ccCCc----CCccccCHHHHHHHHhcCCCcEEEEecc--
Confidence 34677888888777887776665 4899988853 11111 1111111155666666666665554322
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCc-ccccCCCCCccCHHHHHHHHhhCCCcEEEccCC-CCHHHHHHHHHhcCcceee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRT-RDEKDGKKFRADWNAIKAVKNALRIPVLANGNV-RHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt-~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI-~s~eda~~~l~~tGaDgVm 314 (436)
.++.++.+.+.++|+|+|++|... .. ......++.+++. ++-+-..-.- +..+.+++.+...|+|.|+
T Consensus 75 --~~p~d~~~~~~~~gad~v~vH~~q~~~-------d~~~~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~ 144 (229)
T PLN02334 75 --TNPEDYVPDFAKAGASIFTFHIEQAST-------IHLHRLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVL 144 (229)
T ss_pred --CCHHHHHHHHHHcCCCEEEEeeccccc-------hhHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEE
Confidence 234456667788999999999872 11 1113455666553 3322222222 2355566666532399998
Q ss_pred ee
Q 013813 315 SA 316 (436)
Q Consensus 315 IG 316 (436)
+|
T Consensus 145 ~~ 146 (229)
T PLN02334 145 VM 146 (229)
T ss_pred EE
Confidence 87
No 383
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.34 E-value=0.61 Score=48.59 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=50.6
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+-...+.++|+|.|++..-- +. .-..+++|+.||+.. ++.|| .|+|-|.+++++++.. |||++=||-|
T Consensus 254 ~rl~ll~~aGvdvviLDSSq-----Gn-S~~qiemik~iK~~yP~l~Vi-aGNVVT~~qa~nLI~a-GaDgLrVGMG 322 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQ-----GN-SIYQLEMIKYIKETYPDLQII-AGNVVTKEQAANLIAA-GADGLRVGMG 322 (503)
T ss_pred HHHHHhhhcCCcEEEEecCC-----Cc-chhHHHHHHHHHhhCCCceee-ccceeeHHHHHHHHHc-cCceeEeccc
Confidence 34566889999999885321 11 135689999999875 45555 6888899999999987 9999776644
No 384
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.42 Score=45.69 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=60.5
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+.++++.+++.+.+.|++.|-|.-|+. ...+.|+.+++...--+|+.|=|-+++++.++.+. |++.++
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp---------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~a-Ga~fiV 90 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTP---------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAA-GAQFIV 90 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC---------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHc-CCCEEE
Confidence 4678999999999999999999988874 33688999999877679999999999999999986 999875
No 385
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.26 E-value=1.2 Score=44.24 Aligned_cols=133 Identities=14% Similarity=0.022 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHH
Q 013813 167 NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 245 (436)
Q Consensus 167 ~d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~a 245 (436)
=|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.++ +|.+-+- ..+..++++++
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~G----------stGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg-~~~~~~ai~~a 84 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAG----------TTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG-SLNLEESIELA 84 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEcc----------cCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC-cCCHHHHHHHH
Confidence 467777777765 466999999883 3555555566666777776666554 3555532 24578999999
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-E-----ccCCCCHHHHHHHHHh-cCcceeee
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLEE-TGCEGVLS 315 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-a-----nGGI~s~eda~~~l~~-tGaDgVmI 315 (436)
+.+++.|+|++.+..-...... +...-.++.+.+.+ ++||+ + .|---+++.+.++.+. ..+-||=-
T Consensus 85 ~~a~~~Gad~v~v~~P~y~~~~--~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vvgiK~ 157 (279)
T cd00953 85 RAAKSFGIYAIASLPPYYFPGI--PEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKD 157 (279)
T ss_pred HHHHHcCCCEEEEeCCcCCCCC--CHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHhcCCCEEEEEe
Confidence 9999999999987543211000 00122355667776 78876 3 3555678888887753 24444433
No 386
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.24 E-value=0.17 Score=50.17 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=47.2
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.++|+|+|-+-. ...+.++++.+.. ++||.+.|||+ .+.+.++.+ +|+|+|.+|.-.
T Consensus 195 a~~A~~~gaDyI~ld~------------~~~e~l~~~~~~~~~~ipi~AiGGI~-~~ni~~~a~-~Gvd~Iav~sl~ 257 (268)
T cd01572 195 LKEALEAGADIIMLDN------------MSPEELREAVALLKGRVLLEASGGIT-LENIRAYAE-TGVDYISVGALT 257 (268)
T ss_pred HHHHHHcCCCEEEECC------------cCHHHHHHHHHHcCCCCcEEEECCCC-HHHHHHHHH-cCCCEEEEEeee
Confidence 4556689999997732 2246677777665 59999999995 899999887 599999999643
No 387
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.16 E-value=1.2 Score=44.44 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC--ccEEEeccC--ccccc---CCCCCccCHHHHHHHH
Q 013813 210 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGR--TRDEK---DGKKFRADWNAIKAVK 282 (436)
Q Consensus 210 p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG--~d~I~VHgR--t~~~~---~~~~g~ad~~~i~~ik 282 (436)
.+...+.+....+..+.|+.+=+. |.+.++..+.++.++++| +|+|.+--. ..... .......-++.++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK 153 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 344444444444555778888863 567788889999999874 899988322 11110 0110012256677888
Q ss_pred hhCCCcEEEc--cCCCCHHHHHHHHHhcCcceeeee
Q 013813 283 NALRIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 283 ~~~~iPVian--GGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+.+++||++= .++.+..++.+.+++.|+|++.+.
T Consensus 154 ~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 154 DKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 8778888743 344445555566767799999874
No 388
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=94.08 E-value=0.55 Score=44.93 Aligned_cols=138 Identities=17% Similarity=0.263 Sum_probs=84.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 236 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~ 236 (436)
+.++.+|+.|.+.+++.+.|+.+..++..+ -.--|... .-.+.++.+++. ++++.+-. -.
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~--~iKIP~T~---------------~gl~ai~~L~~~-gi~v~~T~--V~ 110 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNV--VVKIPVTE---------------DGLKAIKKLSEE-GIKTNVTA--IF 110 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCE--EEEEcCcH---------------hHHHHHHHHHHc-CCceeeEE--ec
Confidence 478999999999999999998776543321 11223321 113344444433 44544431 12
Q ss_pred ChhhHHHHHHHHHHcCccEEEec-cCcccccCCCCCccCHHHHHHHHhh---CCCc-EEEccCCCCHHHHHHHHHhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNA---LRIP-VLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VH-gRt~~~~~~~~g~ad~~~i~~ik~~---~~iP-VianGGI~s~eda~~~l~~tGaD 311 (436)
+... +..+.++|+++|..+ ||..+. +. .-++.++++.+. .+++ -+...+++++.++.+++.. |||
T Consensus 111 s~~Q----a~~Aa~AGA~yvsP~vgR~~~~--g~---dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~-Gad 180 (211)
T cd00956 111 SAAQ----ALLAAKAGATYVSPFVGRIDDL--GG---DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALA-GAD 180 (211)
T ss_pred CHHH----HHHHHHcCCCEEEEecChHhhc--CC---CHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHc-CCC
Confidence 2232 455667999998664 564432 22 224555555443 3444 4678889999999998886 999
Q ss_pred eeeeehHHhhCCccchhhh
Q 013813 312 GVLSAESLLENPALFAGFR 330 (436)
Q Consensus 312 gVmIGRgal~nP~lf~~i~ 330 (436)
.|-+. |.+++++.
T Consensus 181 ~vTv~------~~vl~~l~ 193 (211)
T cd00956 181 AITLP------PDVLEQLL 193 (211)
T ss_pred EEEeC------HHHHHHHh
Confidence 99988 55555543
No 389
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.08 E-value=0.91 Score=43.18 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=36.7
Q ss_pred HHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhh
Q 013813 276 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 321 (436)
Q Consensus 276 ~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~ 321 (436)
+++.++++.. +.|+-..=||.++++.+..-.- +|||++|..+..
T Consensus 196 ~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv--aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 196 SLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV--ADGVVVGSKIVK 240 (268)
T ss_pred HHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh--ccceEecHHHHH
Confidence 4567888887 7899888899999999987664 999999987653
No 390
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.06 E-value=0.49 Score=46.97 Aligned_cols=126 Identities=20% Similarity=0.178 Sum_probs=77.7
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. ++.|+|+|=++. ..|-+..-..+.-.++++.+.+.+ ++||.+-+- +.+.++++++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~G----------stGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~i~~ 88 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLG----------STGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEAIEL 88 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESS----------TTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHHHHH
Confidence 55677777764 467999998883 234333334455556666655544 578888843 2367899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-Ec-----cCCCCHHHHHHHHHh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEE 307 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-an-----GGI~s~eda~~~l~~ 307 (436)
++.++++|+|++.+..-.... .+..--.++++.|.+.+++||+ +| |---+++.+.++.+.
T Consensus 89 a~~a~~~Gad~v~v~~P~~~~---~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~ 154 (289)
T PF00701_consen 89 ARHAQDAGADAVLVIPPYYFK---PSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKI 154 (289)
T ss_dssp HHHHHHTT-SEEEEEESTSSS---CCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTS
T ss_pred HHHHhhcCceEEEEecccccc---chhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcC
Confidence 999999999999775332110 1001124667778878888875 33 445566666665543
No 391
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.05 E-value=1 Score=42.12 Aligned_cols=129 Identities=20% Similarity=0.182 Sum_probs=77.4
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~ 238 (436)
|+|-|=..++++..+.++.+..|.+.||+... .. ...-.++++.+++.. +..+.+-+.+- +.
T Consensus 2 l~~alD~~~~~~a~~~~~~l~~~v~~iev~~~--l~--------------~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~ 64 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKVADYVDIIEIGTP--LI--------------KNEGIEAVKEMKEAFPDRKVLADLKTM-DA 64 (206)
T ss_pred eEEEecCCCHHHHHHHHHHcccCeeEEEeCCH--HH--------------HHhCHHHHHHHHHHCCCCEEEEEEeec-cc
Confidence 55666678889999999888668899999521 10 011134455555442 33343332221 21
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc-cCCCC-HHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-GNVRH-MEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian-GGI~s-~eda~~~l~~tGaDgVmIG 316 (436)
.. ..++.+.++|+|+|++|+-... ..--+.+..+++ .+++++.. -+..+ .++++.+.+. |+|.|.+.
T Consensus 65 ~~--~~~~~~~~~Gad~i~vh~~~~~-------~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~-g~d~v~~~ 133 (206)
T TIGR03128 65 GE--YEAEQAFAAGADIVTVLGVADD-------ATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKEL-GADYIGVH 133 (206)
T ss_pred hH--HHHHHHHHcCCCEEEEeccCCH-------HHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHc-CCCEEEEc
Confidence 21 1367788999999999975421 011244555554 58888764 24444 4778877775 99999774
No 392
>PLN02417 dihydrodipicolinate synthase
Probab=94.02 E-value=0.87 Score=45.25 Aligned_cols=123 Identities=11% Similarity=-0.002 Sum_probs=77.5
Q ss_pred CHHHHHHHHHH-HcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHH
Q 013813 168 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 244 (436)
Q Consensus 168 d~e~~~~AA~~-v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ 244 (436)
|.+.+.+-++. +..|+++|=+| |..|-+..-..+.-.++++.+.+.+ .+||.+-+- ..+..+++++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~----------GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~-~~~t~~~i~~ 88 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVG----------GTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG-SNSTREAIHA 88 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC----------ccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC-CccHHHHHHH
Confidence 55667766754 46699999988 3345444445666666666655544 478888742 2356899999
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-E-----ccCCCCHHHHHHHHH
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLE 306 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-a-----nGGI~s~eda~~~l~ 306 (436)
++.++++|+|++.+..-.... .+...-.++.+.+.+.. ||+ + .|---+++.+.++.+
T Consensus 89 a~~a~~~Gadav~~~~P~y~~---~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 89 TEQGFAVGMHAALHINPYYGK---TSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred HHHHHHcCCCEEEEcCCccCC---CCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 999999999999886543210 00011245566666654 775 2 344456777776654
No 393
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.01 E-value=7.2 Score=38.86 Aligned_cols=189 Identities=16% Similarity=0.094 Sum_probs=105.8
Q ss_pred CCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhh----hhhhccCCCCCEEEEecCCCHHHHHHHHHHHcC-CCc
Q 013813 113 NSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRN----EEFATCKEDRPLFVQFCANDPEILLNAARRVEP-YCD 184 (436)
Q Consensus 113 vtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~----~~~~~~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D 184 (436)
+-...+|++++.+ |++.++.---+.....-+...+. ...+......|++++++. +.++..+.++.+++ |+|
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 3346677777655 77654422112221111111111 112233456899999976 77888888877765 999
Q ss_pred EEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH-cCccEEEeccCcc
Q 013813 185 YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED-AGCSLLAVHGRTR 263 (436)
Q Consensus 185 ~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~-aG~d~I~VHgRt~ 263 (436)
+|-+= .|. |- ..+.+-+.+-.+.|.+.+++||.+=-+.+.+.. .++.+.+.+ .+ .| .|- +
T Consensus 97 ~v~~~--pP~-------y~---~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~--~~~l~~L~~~~p--ni--vgi-K 157 (289)
T cd00951 97 GILLL--PPY-------LT---EAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLT--ADSLARLAERCP--NL--VGF-K 157 (289)
T ss_pred EEEEC--CCC-------CC---CCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCC--HHHHHHHHhcCC--CE--EEE-E
Confidence 99773 233 11 124577888888888888999998876654322 334444443 32 11 111 1
Q ss_pred cccCCCCCccCHHHHHHHHhhCCCc-EEEccCCCCHHH-HHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 264 DEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMED-VQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 264 ~~~~~~~g~ad~~~i~~ik~~~~iP-VianGGI~s~ed-a~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+ . ..|+..+.++.+..+-. .+.+|. .+.+. +...+.. |++|++.|-+.+ -|.++.++-
T Consensus 158 d---s---~~d~~~~~~~~~~~~~~~~v~~G~-~~~d~~~~~~l~~-Ga~G~is~~~n~-~P~~~~~l~ 217 (289)
T cd00951 158 D---G---VGDIELMRRIVAKLGDRLLYLGGL-PTAEVFALAYLAM-GVPTYSSAVFNF-VPEIALAFY 217 (289)
T ss_pred e---C---CCCHHHHHHHHHhcCCCeEEEeCC-CcchHhHHHHHHC-CCCEEEechhhh-hHHHHHHHH
Confidence 1 1 23566677776654322 344442 22222 4455665 999998886654 477776654
No 394
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.97 E-value=0.75 Score=46.26 Aligned_cols=147 Identities=12% Similarity=0.172 Sum_probs=83.3
Q ss_pred HHHc-CCCcEEEEec-CCCc-hhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHHHcC
Q 013813 177 RRVE-PYCDYVDINL-GCPQ-RIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAG 252 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~-GCP~-~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG 252 (436)
++++ .||++|=+-- |+-. ..-..|. | +-..+.+.+.++.|.+.+++||++-+-.|. +..++...++.++++|
T Consensus 31 ri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aG 106 (292)
T PRK11320 31 LLAERAGFKAIYLSGGGVAAASLGLPDL-G---ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAG 106 (292)
T ss_pred HHHHHcCCCEEEeCHHHHHhHhcCCCCC-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 4454 4899887752 2221 0001110 1 234566778888888899999999998875 5567778899999999
Q ss_pred ccEEEeccCcc----cccCCCCCccCHHHHHHHHhhC----CCcEEEccCCCC-----HHHHHH----HHHhcCcceeee
Q 013813 253 CSLLAVHGRTR----DEKDGKKFRADWNAIKAVKNAL----RIPVLANGNVRH-----MEDVQK----CLEETGCEGVLS 315 (436)
Q Consensus 253 ~d~I~VHgRt~----~~~~~~~g~ad~~~i~~ik~~~----~iPVianGGI~s-----~eda~~----~l~~tGaDgVmI 315 (436)
+.+|+|-.... ....+...-.--+++.+|+... +.+++.|..... .+++.+ +.+ .|||+|++
T Consensus 107 aagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~e-AGAD~ifi 185 (292)
T PRK11320 107 AAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVE-AGADMIFP 185 (292)
T ss_pred CeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHH-cCCCEEEe
Confidence 99999954331 1111110001113445544322 344555443332 444432 233 49999998
Q ss_pred ehHHhhCCccchhhh
Q 013813 316 AESLLENPALFAGFR 330 (436)
Q Consensus 316 GRgal~nP~lf~~i~ 330 (436)
-- +.++.-++++.
T Consensus 186 ~~--~~~~~~i~~~~ 198 (292)
T PRK11320 186 EA--MTELEMYRRFA 198 (292)
T ss_pred cC--CCCHHHHHHHH
Confidence 52 45555444443
No 395
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=93.96 E-value=0.39 Score=45.77 Aligned_cols=87 Identities=18% Similarity=0.317 Sum_probs=66.8
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC-cEEEccCCCCHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCL 305 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i-PVianGGI~s~eda~~~l 305 (436)
++..=+|. .+.++..++++.+.+.|+..|-|.-++.. ..+.++.+++.... -+++.|.|.+.++++.++
T Consensus 11 ~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~~~---------~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~ 80 (206)
T PRK09140 11 PLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNSPD---------PFDSIAALVKALGDRALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCCcc---------HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHH
Confidence 44444554 46688999999999999999998765432 24578888877654 479999999999999999
Q ss_pred HhcCcceeeeehHHhhCCccch
Q 013813 306 EETGCEGVLSAESLLENPALFA 327 (436)
Q Consensus 306 ~~tGaDgVmIGRgal~nP~lf~ 327 (436)
+. |+|+++.+- .|+.+..
T Consensus 81 ~a-GA~fivsp~---~~~~v~~ 98 (206)
T PRK09140 81 DA-GGRLIVTPN---TDPEVIR 98 (206)
T ss_pred Hc-CCCEEECCC---CCHHHHH
Confidence 97 999999873 4444443
No 396
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=93.96 E-value=5.3 Score=39.27 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=90.2
Q ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 154 CKEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 154 ~~~e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
.....|+++++.+++.++..+.++.+++ |+|+|-+-. |. |. ....+.+.+-.+++.+.+++||.+--
T Consensus 63 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~-------y~---~~~~~~~~~~~~~ia~~~~~pi~iYn 130 (281)
T cd00408 63 VAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP--PY-------YN---KPSQEGIVAHFKAVADASDLPVILYN 130 (281)
T ss_pred hCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC--Cc-------CC---CCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3457899999999999988888887765 999999853 33 11 13457788888888888899998874
Q ss_pred ccCC-ChhhHHHHHHHHHHcC-ccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEccCCCCHHHHHHHHHhcC
Q 013813 233 RVFP-NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 233 Rlg~-~~~d~~~~ak~le~aG-~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianGGI~s~eda~~~l~~tG 309 (436)
-... ...-..++.+.+.+.+ +.+|- .. ..|+..+.++.+..+ --.+.+|. -..+...+.. |
T Consensus 131 ~P~~tg~~l~~~~~~~L~~~~~v~giK---------~s---~~d~~~~~~~~~~~~~~~~v~~G~---d~~~~~~l~~-G 194 (281)
T cd00408 131 IPGRTGVDLSPETIARLAEHPNIVGIK---------DS---SGDLDRLTRLIALLGPDFAVLSGD---DDLLLPALAL-G 194 (281)
T ss_pred CccccCCCCCHHHHHHHhcCCCEEEEE---------eC---CCCHHHHHHHHHhcCCCeEEEEcc---hHHHHHHHHc-C
Confidence 3321 1111133444444321 22221 11 235666677766542 22344554 2445555654 9
Q ss_pred cceeeeehHHhhCCccchhhh
Q 013813 310 CEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 310 aDgVmIGRgal~nP~lf~~i~ 330 (436)
++|.+.|-+.+ -|+++.++-
T Consensus 195 ~~G~i~~~~n~-~p~~~~~~~ 214 (281)
T cd00408 195 ADGAISGAANV-APKLAVALY 214 (281)
T ss_pred CCEEEehHHhh-CHHHHHHHH
Confidence 99999886543 366665544
No 397
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.95 E-value=0.59 Score=44.82 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=67.5
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC---CcEEEccCCCCHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQK 303 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~---iPVianGGI~s~eda~~ 303 (436)
++..=+|. .+.+++..+++.+.+.|+..+-|.-|+.. ..+.|+++++..+ --+++.|-|.|.+++++
T Consensus 14 ~vi~vir~-~~~~~a~~~~~al~~~Gi~~iEit~~~~~---------a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~ 83 (213)
T PRK06552 14 GVVAVVRG-ESKEEALKISLAVIKGGIKAIEVTYTNPF---------ASEVIKELVELYKDDPEVLIGAGTVLDAVTARL 83 (213)
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECCCcc---------HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHH
Confidence 44444554 46788999999999999999999877632 3578899987653 24799999999999999
Q ss_pred HHHhcCcceeeeehHHhhCCccchhhh
Q 013813 304 CLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 304 ~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+++. |+++++. =-.||.+.+-.+
T Consensus 84 a~~a-GA~Fivs---P~~~~~v~~~~~ 106 (213)
T PRK06552 84 AILA-GAQFIVS---PSFNRETAKICN 106 (213)
T ss_pred HHHc-CCCEEEC---CCCCHHHHHHHH
Confidence 9997 9999982 134555554433
No 398
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=93.76 E-value=0.68 Score=44.09 Aligned_cols=125 Identities=21% Similarity=0.252 Sum_probs=75.4
Q ss_pred CCHHHHHHHH---HHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHH
Q 013813 167 NDPEILLNAA---RRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 167 ~d~e~~~~AA---~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~ 242 (436)
.+.+++.... +.+ +.|+|+|-+-+--+.. -=|.+.+.+++++.. +.|++. .|..+...+..
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg-----------~iD~~~~~~Li~~a~---~~~~tF-HRAfD~~~d~~ 130 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDG-----------EIDEEALEELIEAAG---GMPVTF-HRAFDEVPDPE 130 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTS-----------SB-HHHHHHHHHHHT---TSEEEE--GGGGGSSTHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCC-----------CcCHHHHHHHHHhcC---CCeEEE-eCcHHHhCCHH
Confidence 4455555444 433 4589998876432321 136678888888765 678887 56654444556
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+-.+.+.+.|++.|--+|..... .-..+.++++.+.. ++-|+..|||+. +.+.++++.+|+..+
T Consensus 131 ~al~~L~~lG~~rVLTSGg~~~a------~~g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 131 EALEQLIELGFDRVLTSGGAPTA------LEGIENLKELVEQAKGRIEIMPGGGVRA-ENVPELVEETGVREI 196 (201)
T ss_dssp HHHHHHHHHT-SEEEESTTSSST------TTCHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHHHHHT-SEE
T ss_pred HHHHHHHhcCCCEEECCCCCCCH------HHHHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHHHhhCCeEE
Confidence 66777888999999777665322 12356666665543 688999999985 778888888888765
No 399
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.75 E-value=0.31 Score=45.51 Aligned_cols=89 Identities=19% Similarity=0.345 Sum_probs=66.5
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 306 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~ 306 (436)
|+..=+|. .+.++..++++.+.++|++.|.+.-++. ...+.++.+++..+-..++.|.|.+.+++..+++
T Consensus 5 ~~~~i~r~-~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~ 74 (190)
T cd00452 5 PLVAVLRG-DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIA 74 (190)
T ss_pred cEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 34444444 4568888999999999999999875532 2356788888876545789999999999999998
Q ss_pred hcCcceeeeehHHhhCCccchhh
Q 013813 307 ETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 307 ~tGaDgVmIGRgal~nP~lf~~i 329 (436)
. |+|+|+.+- .++.+....
T Consensus 75 ~-Ga~~i~~p~---~~~~~~~~~ 93 (190)
T cd00452 75 A-GAQFIVSPG---LDPEVVKAA 93 (190)
T ss_pred c-CCCEEEcCC---CCHHHHHHH
Confidence 6 999998763 345555433
No 400
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.75 E-value=1.3 Score=44.21 Aligned_cols=200 Identities=20% Similarity=0.204 Sum_probs=118.1
Q ss_pred HHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCcccc---hhhccChhh-hhhhh-----hccCCCCCEEEEe-
Q 013813 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHS---RIFTESEKY-RNEEF-----ATCKEDRPLFVQF- 164 (436)
Q Consensus 95 ~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temisa---~~l~~~~~~-~~~~~-----~~~~~e~plivQL- 164 (436)
.|-.-+-++.+++.| |+=|..--+++.+.|-..+||---.. .++...... ....+ -+...+.|++|-+
T Consensus 9 ~fR~l~~~~~~~~~p--g~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~d 86 (289)
T COG2513 9 AFRALHASGDPLVLP--GAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDID 86 (289)
T ss_pred HHHHHHhCCCCEEec--CCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEecc
Confidence 355455555455544 45566666788889988877543221 111111111 00000 0224678999887
Q ss_pred --cCCCHHHHHHHHHHH-cCCCcEEEEec--C---CCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccC
Q 013813 165 --CANDPEILLNAARRV-EPYCDYVDINL--G---CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 235 (436)
Q Consensus 165 --~g~d~e~~~~AA~~v-~~g~D~IdLN~--G---CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg 235 (436)
+|+ +...++.++.+ +.|+.+|.|-- + |-+- -|-.+..-.+.+.+| +++++.. +.++.+=-|..
T Consensus 87 tGfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~------~gk~l~~~~e~v~rI-kAa~~a~~~~~fvi~ARTd 158 (289)
T COG2513 87 TGFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHL------PGKELVSIDEMVDRI-KAAVEARRDPDFVIIARTD 158 (289)
T ss_pred CCCCc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCC------CCCCcCCHHHHHHHH-HHHHHhccCCCeEEEeehH
Confidence 444 77788877655 45888888852 1 3221 133444433444444 4444443 55666665652
Q ss_pred ----CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc----cC--CCCHHHHHHHH
Q 013813 236 ----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN----GN--VRHMEDVQKCL 305 (436)
Q Consensus 236 ----~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian----GG--I~s~eda~~~l 305 (436)
...+++++=++...++|+|.|-.++.+ +.+.++++.+.+++|+.+| |+ ..|.+++
T Consensus 159 a~~~~~ld~AI~Ra~AY~eAGAD~if~~al~-----------~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L---- 223 (289)
T COG2513 159 ALLVEGLDDAIERAQAYVEAGADAIFPEALT-----------DLEEIRAFAEAVPVPLPANITEFGKTPLLTVAEL---- 223 (289)
T ss_pred HHHhccHHHHHHHHHHHHHcCCcEEccccCC-----------CHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHH----
Confidence 236788888999999999999887664 3577889999888665544 33 4554433
Q ss_pred HhcCcceeeeehHH
Q 013813 306 EETGCEGVLSAESL 319 (436)
Q Consensus 306 ~~tGaDgVmIGRga 319 (436)
+.-|+..|..|-.+
T Consensus 224 ~~~Gv~~V~~~~~~ 237 (289)
T COG2513 224 AELGVKRVSYGLTA 237 (289)
T ss_pred HhcCceEEEECcHH
Confidence 33599999988443
No 401
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.74 E-value=2.3 Score=42.61 Aligned_cols=110 Identities=20% Similarity=0.336 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cCC---C---------hhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccC
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VFP---N---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 274 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg~---~---------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad 274 (436)
.|-+..+++++..+ ..++.|-.=+- +|. . ..++.+..+.+++.|+|.+.|.-.|..+.+......|
T Consensus 112 eNi~~T~~vv~~Ah-~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld 190 (284)
T PRK12857 112 ENIALTKKVVEIAH-AVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLD 190 (284)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCC
Confidence 35566667776654 23555444321 110 0 1234444445568899999774444433333333579
Q ss_pred HHHHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 275 WNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 275 ~~~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
|+.+++|++.+++|++.-||=..+ ++++++++. |+.-|=|++.+
T Consensus 191 ~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi~T~~ 235 (284)
T PRK12857 191 FDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISL-GVRKVNIDTNI 235 (284)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEeCcHH
Confidence 999999999999999988864444 566777764 88888777654
No 402
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.74 E-value=0.88 Score=45.14 Aligned_cols=126 Identities=20% Similarity=0.256 Sum_probs=73.5
Q ss_pred HHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCcc-EEEEeccC---CChhhHHHH-HHHHH
Q 013813 176 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-VSCKIRVF---PNLQDTIKY-AKMLE 249 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iP-VsVKiRlg---~~~~d~~~~-ak~le 249 (436)
|++++ .|+|.|= .|....++.-| |-....-..+.+...+++|++.++.| |++-+-.+ .+.++.++. .+.++
T Consensus 28 Arl~e~aG~d~i~--vGds~~~~~lG-~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~ 104 (264)
T PRK00311 28 AKLFDEAGVDVIL--VGDSLGMVVLG-YDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLMK 104 (264)
T ss_pred HHHHHHcCCCEEE--ECHHHHHHHcC-CCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHHH
Confidence 44554 4899994 35444433322 44444456677888888888888875 77776433 233454444 45556
Q ss_pred HcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE-----------EccCC----CCHHHHHHHH------Hhc
Q 013813 250 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-----------ANGNV----RHMEDVQKCL------EET 308 (436)
Q Consensus 250 ~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi-----------anGGI----~s~eda~~~l------~~t 308 (436)
++|+++|.+-+.. ...+.|+.+.+ .+|||+ ..||. ++.+.+.+++ ++.
T Consensus 105 ~aGa~aVkiEdg~----------~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eA 173 (264)
T PRK00311 105 EAGAHAVKLEGGE----------EVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEA 173 (264)
T ss_pred HhCCeEEEEcCcH----------HHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHC
Confidence 6999999987631 11234555543 389987 44543 2333333332 234
Q ss_pred Ccceeee
Q 013813 309 GCEGVLS 315 (436)
Q Consensus 309 GaDgVmI 315 (436)
|||+|.+
T Consensus 174 GA~~i~l 180 (264)
T PRK00311 174 GAFALVL 180 (264)
T ss_pred CCCEEEE
Confidence 9998876
No 403
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.71 E-value=0.94 Score=45.40 Aligned_cols=148 Identities=11% Similarity=0.094 Sum_probs=82.5
Q ss_pred HHHc-CCCcEEEEecCCCchhhhcCccc-ccccCChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHHHcCc
Q 013813 177 RRVE-PYCDYVDINLGCPQRIARRGNYG-AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGC 253 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~GCP~~~~~~~~~G-s~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG~ 253 (436)
++++ .||++|=+--.+ ... .. |+- ..++ ..+.+.+.++.|.+.+++||++-+-.|. +..++...++.++++|+
T Consensus 27 ri~e~aGf~Ai~~sg~~-~a~-~l-G~pD~g~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~ 102 (285)
T TIGR02317 27 LLAERAGFEAIYLSGAA-VAA-SL-GLPDLGIT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGA 102 (285)
T ss_pred HHHHHcCCCEEEEcHHH-HHH-hC-CCCCCCCC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCC
Confidence 3443 489888876322 110 01 111 1133 5666777788888889999999998874 45667778999999999
Q ss_pred cEEEeccCcccccCC---CCCccC-HHHHHHHHh---hC-CCcEEEccCCCC-----HHHHHHH---HHhcCcceeeeeh
Q 013813 254 SLLAVHGRTRDEKDG---KKFRAD-WNAIKAVKN---AL-RIPVLANGNVRH-----MEDVQKC---LEETGCEGVLSAE 317 (436)
Q Consensus 254 d~I~VHgRt~~~~~~---~~g~ad-~~~i~~ik~---~~-~iPVianGGI~s-----~eda~~~---l~~tGaDgVmIGR 317 (436)
.+|+|-..+..-+.+ .+.-.+ -+++.+|+. .. +.+++.|..... .+++.+- ..+.|||+|++-
T Consensus 103 agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~- 181 (285)
T TIGR02317 103 AAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPE- 181 (285)
T ss_pred eEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeC-
Confidence 999996543211111 110111 134444443 22 345555554332 4444322 123499999984
Q ss_pred HHhhCCccchhhh
Q 013813 318 SLLENPALFAGFR 330 (436)
Q Consensus 318 gal~nP~lf~~i~ 330 (436)
| +.++...+++.
T Consensus 182 g-~~~~e~i~~~~ 193 (285)
T TIGR02317 182 A-LTSLEEFRQFA 193 (285)
T ss_pred C-CCCHHHHHHHH
Confidence 2 34444444443
No 404
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=93.70 E-value=2.5 Score=42.17 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHHhcccCccEEEEec-cC-CC---------hhhHHHHHHHHHHcCccEEEeccCcccccCCC-CCccCH
Q 013813 208 DNLPLVKSLVEKLALNLNVPVSCKIR-VF-PN---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADW 275 (436)
Q Consensus 208 ~~p~~v~eIv~av~~~~~iPVsVKiR-lg-~~---------~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~-~g~ad~ 275 (436)
.+.+..+++++..+.. ++.|-.=+- ++ .. ..++.+..+.+++.|+|.|.|.-.|..+.+.. ....||
T Consensus 107 eNi~~t~~vv~~ah~~-gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~ 185 (276)
T cd00947 107 ENVAKTKEVVELAHAY-GVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDF 185 (276)
T ss_pred HHHHHHHHHHHHHHHc-CCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCH
Confidence 4555666777665533 555544321 11 10 12344444555678999997643333332222 335899
Q ss_pred HHHHHHHhhCCCcEEEccCCCCH-HHHHHHHHhcCcceeeeehHH
Q 013813 276 NAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 276 ~~i~~ik~~~~iPVianGGI~s~-eda~~~l~~tGaDgVmIGRga 319 (436)
+.+++|.+.+++|++.-||=..+ ++++++++. |+.-|=|++.+
T Consensus 186 ~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi~T~l 229 (276)
T cd00947 186 DRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKL-GVCKININTDL 229 (276)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc-CCeEEEeChHH
Confidence 99999999999999988876665 557787774 88888887765
No 405
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.69 E-value=0.22 Score=53.80 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC-cEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i-PVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
.+..+.++.|.++|+|.|.|. +... .+ ..-.+.|+++++..+. -.+..|.|-|.++++.+++. |||+|.+|.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd--~a~g---~~-~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a-GAd~I~vg~ 313 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCID--SSEG---YS-EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA-GADFVKVGI 313 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeec--Cccc---cc-HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc-CCCEEEECC
Confidence 456778899999999999885 2211 10 1225788899987654 35788999999999999986 999998864
Q ss_pred H
Q 013813 318 S 318 (436)
Q Consensus 318 g 318 (436)
|
T Consensus 314 g 314 (502)
T PRK07107 314 G 314 (502)
T ss_pred C
Confidence 3
No 406
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.68 E-value=1 Score=43.95 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=89.0
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg 235 (436)
.|++ =+...|.-. |++++ .|+|.|=+--..- ...- ||-....-..+.+...+++|++.+. .||++-+-.|
T Consensus 12 ~~i~-~~~ayD~~s----A~i~e~aG~dai~v~~s~~--a~~~-G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G 83 (240)
T cd06556 12 ERFA-TLTAYDYSM----AKQFADAGLNVMLVGDSQG--MTVA-GYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFG 83 (240)
T ss_pred CeEE-EecCCCHHH----HHHHHHcCCCEEEEChHHH--HHhc-CCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 3443 355555432 34444 3888887753211 1111 1222222356778888888888885 7999998876
Q ss_pred C--ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC---------------CH
Q 013813 236 P--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR---------------HM 298 (436)
Q Consensus 236 ~--~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~---------------s~ 298 (436)
. +.+++.+.++.+.++|+++|.+-+.. -..+.++.+++. .+||++==|.. +.
T Consensus 84 ~g~~~~~~~~~~~~l~~aGa~gv~iED~~----------~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~ 152 (240)
T cd06556 84 AYGAPTAAFELAKTFMRAGAAGVKIEGGE----------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGD 152 (240)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcCcH----------HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCH
Confidence 4 33677888999999999999997632 012345555544 47777655541 12
Q ss_pred HHHHHHH------HhcCcceeeeehHHhhCCccchhhh
Q 013813 299 EDVQKCL------EETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 299 eda~~~l------~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+++++++ ++.|||+|.+= +. ++...+++.
T Consensus 153 ~~~~~ai~Ra~ay~~AGAd~i~~e-~~--~~e~~~~i~ 187 (240)
T cd06556 153 EAGEQLIADALAYAPAGADLIVME-CV--PVELAKQIT 187 (240)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEc-CC--CHHHHHHHH
Confidence 3333332 23599999884 32 555555444
No 407
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=93.66 E-value=1.7 Score=44.81 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCccEEEeccCcccccCCC--CC---ccCHHHHHHHHhhC-CCcEEEccCCCCH----------------
Q 013813 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KF---RADWNAIKAVKNAL-RIPVLANGNVRHM---------------- 298 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~VHgRt~~~~~~~--~g---~ad~~~i~~ik~~~-~iPVianGGI~s~---------------- 298 (436)
+.+..+.+++.|+|.+.|.-.|..+.+.. +. ..||+.+++|++.+ ++|++.-||=..+
T Consensus 173 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~ 252 (347)
T TIGR01521 173 PEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKE 252 (347)
T ss_pred HHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccc
Confidence 34444555688999997643333332221 11 27999999999999 7999999987665
Q ss_pred ------HHHHHHHHhcCcceeeeehHH
Q 013813 299 ------EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 299 ------eda~~~l~~tGaDgVmIGRga 319 (436)
++++++++. |+.-|=|++.+
T Consensus 253 ~~g~p~e~i~~ai~~-GI~KVNi~Tdl 278 (347)
T TIGR01521 253 TYGVPVEEIVEGIKY-GVRKVNIDTDL 278 (347)
T ss_pred cCCCCHHHHHHHHHC-CCeeEEeChHH
Confidence 666666664 66666666544
No 408
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=93.66 E-value=0.77 Score=49.51 Aligned_cols=48 Identities=25% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
..+|.+.+++|+|.||||++.... .++.+..+|+.+++.+++||+|-.
T Consensus 168 ~~~A~~~~~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT 215 (499)
T TIGR00284 168 EGLAARMERDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADT 215 (499)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeC
Confidence 444456678899999999876422 345689999999888889999984
No 409
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=93.58 E-value=1.6 Score=44.92 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCccEEEe-----ccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCH----------------
Q 013813 241 TIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHM---------------- 298 (436)
Q Consensus 241 ~~~~ak~le~aG~d~I~V-----HgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~---------------- 298 (436)
+.+..+.+++.|+|.|.| ||-............+|+.+++|++.+ ++|++.-||=..+
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~ 254 (347)
T PRK13399 175 PDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKE 254 (347)
T ss_pred HHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccc
Confidence 444445556789999965 555443100000127899999999999 7999999987665
Q ss_pred ------HHHHHHHHhcCcceeeeehH
Q 013813 299 ------EDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 299 ------eda~~~l~~tGaDgVmIGRg 318 (436)
++++++++. |+.-|=|++.
T Consensus 255 ~~g~~~e~~~kai~~-GI~KINi~Td 279 (347)
T PRK13399 255 TYGVPVEEIQRGIKH-GVRKVNIDTD 279 (347)
T ss_pred cCCCCHHHHHHHHHC-CCeEEEeChH
Confidence 555666654 6665555544
No 410
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.57 E-value=0.82 Score=44.19 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=66.2
Q ss_pred cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC----CCcEEEccCCCCHHHHH
Q 013813 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL----RIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 227 PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~----~iPVianGGI~s~eda~ 302 (436)
+|..=+|. .+.+++.++++.+.+.|+..|-|.-|+.. ..+.|+.+++.. .--+++.|-|.|.++++
T Consensus 16 ~vi~Vvr~-~~~~~a~~~~~al~~gGi~~iEiT~~tp~---------a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~ 85 (222)
T PRK07114 16 GMVPVFYH-ADVEVAKKVIKACYDGGARVFEFTNRGDF---------AHEVFAELVKYAAKELPGMILGVGSIVDAATAA 85 (222)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCCc---------HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence 33333553 56789999999999999999999887743 246666665322 22389999999999999
Q ss_pred HHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 303 KCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 303 ~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
.+++. |++.++.= -.||.+++..+
T Consensus 86 ~a~~a-GA~FiVsP---~~~~~v~~~~~ 109 (222)
T PRK07114 86 LYIQL-GANFIVTP---LFNPDIAKVCN 109 (222)
T ss_pred HHHHc-CCCEEECC---CCCHHHHHHHH
Confidence 99987 99998742 25677766554
No 411
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.56 E-value=1.6 Score=40.55 Aligned_cols=129 Identities=22% Similarity=0.190 Sum_probs=82.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEeccCCCh
Q 013813 160 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNL 238 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRlg~~~ 238 (436)
+++-|=..++++..+.++.+.++++.|+++. |. ... +| .+.++.+++. .++|+.+-.-.. +.
T Consensus 3 ~~~a~d~~~~~~~~~~~~~l~~~i~~ieig~--~~--~~~--~g----------~~~i~~i~~~~~~~~i~~~~~v~-~~ 65 (202)
T cd04726 3 LQVALDLLDLEEALELAKKVPDGVDIIEAGT--PL--IKS--EG----------MEAVRALREAFPDKIIVADLKTA-DA 65 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHhhhcCCEEEcCC--HH--HHH--hC----------HHHHHHHHHHCCCCEEEEEEEec-cc
Confidence 4555655678888888887776799999952 22 111 22 3556666654 467877632221 11
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc-cCCCCHHHHHHHHHhcCcceeeee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-GNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian-GGI~s~eda~~~l~~tGaDgVmIG 316 (436)
. ..+++.+.++|+++|++|+.... ...-+.++.+++ .+++++.. =+..|+.++.+++. .|+|.|.++
T Consensus 66 ~--~~~~~~~~~aGad~i~~h~~~~~-------~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~-~~~d~v~~~ 133 (202)
T cd04726 66 G--ALEAEMAFKAGADIVTVLGAAPL-------STIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLK-LGVDIVILH 133 (202)
T ss_pred c--HHHHHHHHhcCCCEEEEEeeCCH-------HHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHH-CCCCEEEEc
Confidence 1 23568888999999999976421 011234455554 57777764 78889999988666 499999885
No 412
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.52 E-value=1.8 Score=41.56 Aligned_cols=144 Identities=16% Similarity=0.210 Sum_probs=86.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
++.++++-|.-.|+..+..-+ ..+.|+|.+-+|..+ ..+.+.+.++++++ .+.-+.|-+-..
T Consensus 55 ~~~~v~~DLK~~Di~~~v~~~-~~~~Gad~vTvH~~a----------------~~~~i~~~~~~~~~-~g~~~~V~llts 116 (216)
T PRK13306 55 PDKIIVADTKIADAGKILAKM-AFEAGADWVTVICAA----------------HIPTIKAALKVAKE-FNGEIQIELYGN 116 (216)
T ss_pred CCCEEEEEEeecCCcHHHHHH-HHHCCCCEEEEeCCC----------------CHHHHHHHHHHHHH-cCCEEEEEECCC
Confidence 467899999999988776644 557799999999422 24556667776654 243444443333
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.+.++ ++.+.+.|++.+.+|--...+..+.. .+...+.++++++ .+..+...|||+ ++.+....+ .|+|.++
T Consensus 117 ~~~~~----l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~-~~~~i~V~gGI~-~~~~~~~~~-~~ad~~V 189 (216)
T PRK13306 117 WTWEQ----AQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSD-MGFKVSVTGGLV-VEDLKLFKG-IPVKTFI 189 (216)
T ss_pred CCHHH----HHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhc-CCCeEEEcCCCC-HhhHHHHhc-CCCCEEE
Confidence 33332 23455677776666633222221110 1223344555543 244589999998 344544444 4999999
Q ss_pred eehHHhhCCc
Q 013813 315 SAESLLENPA 324 (436)
Q Consensus 315 IGRgal~nP~ 324 (436)
+||++...++
T Consensus 190 vGr~I~~a~d 199 (216)
T PRK13306 190 AGRAIRGAAD 199 (216)
T ss_pred ECCcccCCCC
Confidence 9999877666
No 413
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=93.48 E-value=3.2 Score=41.70 Aligned_cols=205 Identities=12% Similarity=0.108 Sum_probs=115.1
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEeCccc---chhhccChhh-hhhhh-----hccCCCCCEEEEe--
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLH---SRIFTESEKY-RNEEF-----ATCKEDRPLFVQF-- 164 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~Temis---a~~l~~~~~~-~~~~~-----~~~~~e~plivQL-- 164 (436)
+-+.|.++.++++|=+ -|.-=-+++.+.|.+.+||--.. +.++-..... ....+ -....+.|+++=+
T Consensus 7 lr~~l~~~~~~~~pg~--~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~ 84 (290)
T TIGR02321 7 LRAALDSGRLFTAMAA--HNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDT 84 (290)
T ss_pred HHHHHhCCCCEEeccc--cCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCC
Confidence 4455667778888754 44333367777898888865321 1122111100 00000 0123468999876
Q ss_pred -cCCCHHHHHHHHHHH-cCCCcEEEEecCC-CchhhhcCcc--cccccCChHHHHHHHHHHhcc-cCccEEEEecc----
Q 013813 165 -CANDPEILLNAARRV-EPYCDYVDINLGC-PQRIARRGNY--GAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV---- 234 (436)
Q Consensus 165 -~g~d~e~~~~AA~~v-~~g~D~IdLN~GC-P~~~~~~~~~--Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRl---- 234 (436)
+|+.+ ...+.++.+ +.|+.+|.|.-.. |.. .+.. |..-+-+++...+-|++++++ .+.++.|=-|.
T Consensus 85 GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~---cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~ 160 (290)
T TIGR02321 85 GFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKD---TSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALI 160 (290)
T ss_pred CCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcc---cccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence 34555 577777655 5699999997643 322 1111 211123444444444544443 35556665565
Q ss_pred -CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEcc---CCCCHHHHHHHHHhc
Q 013813 235 -FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANG---NVRHMEDVQKCLEET 308 (436)
Q Consensus 235 -g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianG---GI~s~eda~~~l~~t 308 (436)
+...+++++=++...++|+|.|-+++... +.+.+.++.+.++ +||+... ...+.+++. +.+
T Consensus 161 ~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~----------~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~---~lg 227 (290)
T TIGR02321 161 AGLGQQEAVRRGQAYEEAGADAILIHSRQK----------TPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIA---ALS 227 (290)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecCCCC----------CHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHH---Hhc
Confidence 23457888889999999999999987421 2356778777765 5776543 333444433 332
Q ss_pred CcceeeeehHH
Q 013813 309 GCEGVLSAESL 319 (436)
Q Consensus 309 GaDgVmIGRga 319 (436)
++..|..|-.+
T Consensus 228 ~~~~v~~g~~~ 238 (290)
T TIGR02321 228 KVGIVIYGNHA 238 (290)
T ss_pred CCcEEEEChHH
Confidence 26778777444
No 414
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=93.45 E-value=2.6 Score=42.94 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHhcccCccEEEEecc-C--C------C--hhhHHHHHHHHHHcCccEEEeccCcccccCCC-----CCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRV-F--P------N--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-----KFR 272 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRl-g--~------~--~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~-----~g~ 272 (436)
+-+..+++++..+ ..++.|-.=+-. + . . ..++.+..+.+++.|+|.+.+.-.|..+.+.. ...
T Consensus 124 NI~~T~evv~~Ah-~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~ 202 (321)
T PRK07084 124 NVALTKKVVEYAH-QFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPP 202 (321)
T ss_pred HHHHHHHHHHHHH-HcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCc
Confidence 4455666666554 335555443211 1 0 0 12344444555678999997744443333221 235
Q ss_pred cCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcC
Q 013813 273 ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETG 309 (436)
Q Consensus 273 ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tG 309 (436)
.||+.+++|++.+ ++|++.-||=..+++..+.+...|
T Consensus 203 Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g 240 (321)
T PRK07084 203 LRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYG 240 (321)
T ss_pred cCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhc
Confidence 7999999999999 799999998766544444343333
No 415
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=93.23 E-value=1.5 Score=43.36 Aligned_cols=54 Identities=24% Similarity=0.413 Sum_probs=40.4
Q ss_pred CCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEe
Q 013813 167 NDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 232 (436)
Q Consensus 167 ~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKi 232 (436)
.|.+...+-| +.+++|+|.||||++-+ ....++.+..+|+.+++.+++||++..
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT 76 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDS 76 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 3555555555 56788999999998732 134577899999999888899999883
No 416
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.14 E-value=1.9 Score=43.14 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=83.2
Q ss_pred HHHHc-CCCcEEEEec-CCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC-hhhHHHHHHHHHHcC
Q 013813 176 ARRVE-PYCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAG 252 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~-GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~-~~d~~~~ak~le~aG 252 (436)
|++++ .||.+|=+.- |+-...-..| .| .-..+.+.+.++.|.+.+++||+|.+-.|.. ..+....++.++++|
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD-~~---~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG 106 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPD-LG---ITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAG 106 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCc-cc---cccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcC
Confidence 34454 4899888862 2211111111 11 1236778888888999999999999888754 456677788899999
Q ss_pred ccEEEeccCcc----cccCCCCCccCH-HHHHHHH---hhC-CCcEEE--------ccCCCCHHHHH----HHHHhcCcc
Q 013813 253 CSLLAVHGRTR----DEKDGKKFRADW-NAIKAVK---NAL-RIPVLA--------NGNVRHMEDVQ----KCLEETGCE 311 (436)
Q Consensus 253 ~d~I~VHgRt~----~~~~~~~g~ad~-~~i~~ik---~~~-~iPVia--------nGGI~s~eda~----~~l~~tGaD 311 (436)
+.+|+|-.-.. ....+ +.-++. +.+.+|+ +.. +.+++. .|| .+++. .+.+ .|||
T Consensus 107 ~agi~iEDq~~pk~cgh~~g-k~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~---ld~AI~Ra~AY~e-AGAD 181 (289)
T COG2513 107 AAGIHIEDQVGPKRCGHLPG-KELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEG---LDDAIERAQAYVE-AGAD 181 (289)
T ss_pred cceeeeeecccchhcCCCCC-CCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhcc---HHHHHHHHHHHHH-cCCc
Confidence 99998843222 11111 111222 3344444 433 334433 344 34443 3444 4999
Q ss_pred eeeeehHHhhCCccchhhhh
Q 013813 312 GVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 312 gVmIGRgal~nP~lf~~i~~ 331 (436)
+|.. ..+.++..|+++..
T Consensus 182 ~if~--~al~~~e~i~~f~~ 199 (289)
T COG2513 182 AIFP--EALTDLEEIRAFAE 199 (289)
T ss_pred EEcc--ccCCCHHHHHHHHH
Confidence 8863 45566776666553
No 417
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.09 E-value=2 Score=44.24 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCccEEEe-----ccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCH---------------
Q 013813 240 DTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHM--------------- 298 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~V-----HgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~--------------- 298 (436)
++.+..+.+++.|+|.|.| ||.............||+.+++|++.+ ++|++.-||=..+
T Consensus 174 ~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~ 253 (347)
T PRK09196 174 DPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMP 253 (347)
T ss_pred CHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCcc
Confidence 3455555667899999966 655543100000127999999999999 7999988876543
Q ss_pred -------HHHHHHHHhcCcceeeeehHH
Q 013813 299 -------EDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 299 -------eda~~~l~~tGaDgVmIGRga 319 (436)
++++++++. |+.-|=|++.+
T Consensus 254 ~~~G~~~e~i~~ai~~-GI~KINi~Tdl 280 (347)
T PRK09196 254 ETYGVPVEEIQEGIKH-GVRKVNIDTDL 280 (347)
T ss_pred ccCCCCHHHHHHHHHC-CCceEEeChHH
Confidence 556666664 66666666544
No 418
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=93.07 E-value=5.3 Score=41.89 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=83.7
Q ss_pred EEecCCC--HHHHHHHH-H-HHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc---CccEEEEecc
Q 013813 162 VQFCAND--PEILLNAA-R-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCKIRV 234 (436)
Q Consensus 162 vQL~g~d--~e~~~~AA-~-~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~---~iPVsVKiRl 234 (436)
.+|.|.. +++..+.- + .++.|.|.+-|= + -+||++-+..-++++++.- ..-++.-+..
T Consensus 87 QNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiF----------D-----AlND~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 87 QNLVGYRHYADDVVEKFVEKAAENGIDVFRIF----------D-----ALNDVRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred CccccccCCchHHHHHHHHHHHhcCCcEEEec----------h-----hccchhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 3455533 56655544 3 356687776653 1 3678888888888876542 2222222222
Q ss_pred CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc----cCCCCHHHHHHHHHhcCc
Q 013813 235 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN----GNVRHMEDVQKCLEETGC 310 (436)
Q Consensus 235 g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian----GGI~s~eda~~~l~~tGa 310 (436)
-.+.+..+++++.+.+.|+|.|++-.-..- .+....++.|+.+|+.+++||..- -|+.... ..++++. |+
T Consensus 152 vHt~e~yv~~akel~~~g~DSIciKDmaGl----ltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~-ylkAvEA-Gv 225 (472)
T COG5016 152 VHTLEYYVELAKELLEMGVDSICIKDMAGL----LTPYEAYELVKAIKKELPVPVELHTHATSGMAEMT-YLKAVEA-GV 225 (472)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEeeccccc----CChHHHHHHHHHHHHhcCCeeEEecccccchHHHH-HHHHHHh-Cc
Confidence 346677889999999999999998543221 111245899999999999999754 4665443 3344555 89
Q ss_pred ceee
Q 013813 311 EGVL 314 (436)
Q Consensus 311 DgVm 314 (436)
|++=
T Consensus 226 D~iD 229 (472)
T COG5016 226 DGID 229 (472)
T ss_pred chhh
Confidence 8763
No 419
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=93.06 E-value=1.4 Score=42.03 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHH
Q 013813 168 DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 247 (436)
Q Consensus 168 d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~ 247 (436)
+.++..+.++.+.+.++.|+++... .. .+|. ++++++++.. .++.+-+.+++-.......++.
T Consensus 9 ~~~~a~~~~~~~~~~v~~iKig~~l----~~--~~G~----------~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~ 71 (213)
T TIGR01740 9 TKDEALDLADSLGPEIEVIKVGIDL----LL--DGGD----------KIIDELAKLN-KLIFLDLKFADIPNTVKLQYES 71 (213)
T ss_pred CHHHHHHHHHhcCCcCcEEEECHHH----HH--hcCH----------HHHHHHHHcC-CCEEEEEeecchHHHHHHHHHH
Confidence 3343333334344457888888421 01 1332 5666666543 3554444354322333455666
Q ss_pred HHHcCccEEEeccC
Q 013813 248 LEDAGCSLLAVHGR 261 (436)
Q Consensus 248 le~aG~d~I~VHgR 261 (436)
+.+.|+|+++||+-
T Consensus 72 ~~~~gad~vTvh~~ 85 (213)
T TIGR01740 72 KIKQGADMVNVHGV 85 (213)
T ss_pred HHhcCCCEEEEcCC
Confidence 78899999999974
No 420
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=93.06 E-value=1 Score=43.08 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=70.8
Q ss_pred HHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE
Q 013813 214 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 291 (436)
Q Consensus 214 ~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia 291 (436)
.+.++++++.+ ++.+.+-..-+++.+++.++++.+++.++.+| ++... .-|++..+++++..++||.+
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~i-------EeP~~---~~d~~~~~~L~~~~~~pIa~ 150 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWI-------EEPCA---PDDLEGYAALRRRTGIPIAA 150 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeE-------ECCCC---ccCHHHHHHHHhhCCCCEEe
Confidence 56677777766 45677776667888999999999999888776 22111 24688889999999999999
Q ss_pred ccCCCCHHHHHHHHHhcCcceeee
Q 013813 292 NGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 292 nGGI~s~eda~~~l~~tGaDgVmI 315 (436)
.=.+.+.++..++++...+|.+.+
T Consensus 151 dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 151 DESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEec
Confidence 667899999999888767787754
No 421
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=93.01 E-value=0.52 Score=46.86 Aligned_cols=62 Identities=13% Similarity=0.306 Sum_probs=42.8
Q ss_pred HHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeeh
Q 013813 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 245 ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+..+.++|+|+|-+-.-... ++ +.++.+++. .++|+++.||| +.+.+.++.+ +|+|+|++|.
T Consensus 196 a~~A~~~gaD~I~ld~~~p~---------~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~-~Gvd~I~vsa 259 (272)
T cd01573 196 ALAAAEAGADILQLDKFSPE---------ELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAA-AGADILVTSA 259 (272)
T ss_pred HHHHHHcCCCEEEECCCCHH---------HHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHH-cCCcEEEECh
Confidence 33355799999977533221 12 233334443 37999999999 7899999887 5999996664
No 422
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.96 E-value=0.092 Score=48.87 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=50.3
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
|......-.+.+++...|+|-+-+... -..++++++.+++|||+.|=|.+.+|+.++|+. ||++|.-.
T Consensus 102 DS~al~~~~~~i~~~~PD~vEilPg~~-----------p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~a-Ga~aVSTS 169 (175)
T PF04309_consen 102 DSSALETGIKQIEQSKPDAVEILPGVM-----------PKVIKKIREETNIPIIAGGLIRTKEDVEEALKA-GADAVSTS 169 (175)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEESCCH-----------HHHHCCCCCCCSS-EEEESS--SHHHHHHHCCT-TCEEEEE-
T ss_pred cHHHHHHHHHHHhhcCCCEEEEchHHH-----------HHHHHHHHHhcCCCEEeecccCCHHHHHHHHHc-CCEEEEcC
Confidence 333344456778889999998764421 256778888889999999999999999999986 99999877
Q ss_pred hHHh
Q 013813 317 ESLL 320 (436)
Q Consensus 317 Rgal 320 (436)
.--|
T Consensus 170 ~~~L 173 (175)
T PF04309_consen 170 NKEL 173 (175)
T ss_dssp -HHH
T ss_pred ChHh
Confidence 6443
No 423
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.96 E-value=1.3 Score=44.60 Aligned_cols=121 Identities=10% Similarity=0.130 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHHHcCccEEEeccCccc----ccCCCCCccCHHHHHHHHh
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRD----EKDGKKFRADWNAIKAVKN 283 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG~d~I~VHgRt~~----~~~~~~g~ad~~~i~~ik~ 283 (436)
..+.+.+.++.|...+++||++-+-.|. +..+....++.++++|+.+|+|-.-+.. ...+...-.--+++.+|+.
T Consensus 61 ~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~A 140 (294)
T TIGR02319 61 SVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEA 140 (294)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHH
Confidence 3556677788888889999999998875 3345667899999999999999543321 1111100011234445443
Q ss_pred hC----CCcEEEccCCC-----CHHHHHHH---HHhcCcceeeeehHHhhCCccchhhhh
Q 013813 284 AL----RIPVLANGNVR-----HMEDVQKC---LEETGCEGVLSAESLLENPALFAGFRT 331 (436)
Q Consensus 284 ~~----~iPVianGGI~-----s~eda~~~---l~~tGaDgVmIGRgal~nP~lf~~i~~ 331 (436)
.. +.+++.|.... ..+++.+- ..+.|||+|++- | +.++...+++..
T Consensus 141 a~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~-~-~~~~~ei~~~~~ 198 (294)
T TIGR02319 141 AVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLE-A-MLDVEEMKRVRD 198 (294)
T ss_pred HHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEec-C-CCCHHHHHHHHH
Confidence 22 23455444322 24444322 123499999994 3 566666655543
No 424
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=92.95 E-value=1.1 Score=45.41 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
.++.+++-++++++.++.|+.|.+.... ....+.++.+.+.|++.|.+++.. + .+.++++++. ++.
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~--~~~~~~~~~~~~~~v~~v~~~~g~---------p--~~~i~~lk~~-g~~ 111 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS--PFVDELVDLVIEEKVPVVTTGAGN---------P--GKYIPRLKEN-GVK 111 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC--CCHHHHHHHHHhCCCCEEEEcCCC---------c--HHHHHHHHHc-CCE
Confidence 5888999999999888899988865421 122345666778999999875321 1 2468888875 777
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
|+. .|.+.+.++++.+. |+|+|.+
T Consensus 112 v~~--~v~s~~~a~~a~~~-GaD~Ivv 135 (307)
T TIGR03151 112 VIP--VVASVALAKRMEKA-GADAVIA 135 (307)
T ss_pred EEE--EcCCHHHHHHHHHc-CCCEEEE
Confidence 774 78999999888876 9999986
No 425
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.90 E-value=2.6 Score=40.20 Aligned_cols=134 Identities=22% Similarity=0.257 Sum_probs=77.3
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--C---
Q 013813 161 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F--- 235 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g--- 235 (436)
++.++..+.++...| .+.|+|-|||+-+- ..| .|--.... ++.+++..++||.|=||. |
T Consensus 2 ~lEvcv~s~~~a~~A---~~~GAdRiELc~~l-----~~G----GlTPS~g~----i~~~~~~~~ipv~vMIRpr~gdF~ 65 (201)
T PF03932_consen 2 ILEVCVESLEDALAA---EAGGADRIELCSNL-----EVG----GLTPSLGL----IRQAREAVDIPVHVMIRPRGGDFV 65 (201)
T ss_dssp EEEEEESSHHHHHHH---HHTT-SEEEEEBTG-----GGT-----B---HHH----HHHHHHHTTSEEEEE--SSSS-S-
T ss_pred eEEEEeCCHHHHHHH---HHcCCCEEEECCCc-----cCC----CcCcCHHH----HHHHHhhcCCceEEEECCCCCCcc
Confidence 455666676665544 35799999998521 111 23233344 444445678899998887 2
Q ss_pred CChhh---HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEcc---CCCCHHHHHHHHHhc
Q 013813 236 PNLQD---TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANG---NVRHMEDVQKCLEET 308 (436)
Q Consensus 236 ~~~~d---~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianG---GI~s~eda~~~l~~t 308 (436)
.+.++ ..+-++.+.++|+|++.+-.=+.+ +..|.+.++++.+.. +.|+...= -+.++..+.+.|...
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d------g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~l 139 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTED------GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIEL 139 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETT------SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCC------CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhc
Confidence 12222 344567788999999988655443 258888888888764 68887654 355666666666556
Q ss_pred Ccceeeee
Q 013813 309 GCEGVLSA 316 (436)
Q Consensus 309 GaDgVmIG 316 (436)
|++.|.-.
T Consensus 140 G~~rVLTS 147 (201)
T PF03932_consen 140 GFDRVLTS 147 (201)
T ss_dssp T-SEEEES
T ss_pred CCCEEECC
Confidence 99988654
No 426
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=92.88 E-value=1.1 Score=42.13 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=90.6
Q ss_pred CCCcHHHHHHHHHhCCCeEEeCccc--chhhccChhhhhhhhhccCCCCCEEEEecCC-CHHHHHHHHHHHcCCCcEEEE
Q 013813 112 DNSELPFRMLCRRYGAEAAYTPMLH--SRIFTESEKYRNEEFATCKEDRPLFVQFCAN-DPEILLNAARRVEPYCDYVDI 188 (436)
Q Consensus 112 gvtd~~fR~l~~~~Ga~l~~Temis--a~~l~~~~~~~~~~~~~~~~e~plivQL~g~-d~e~~~~AA~~v~~g~D~IdL 188 (436)
|.|+..=-.+|...|++++-.-+.. .+.+. ...........+ |..|=++.+ +++++.+.++ +.+.|.|.|
T Consensus 5 Gi~~~~da~~~~~~g~d~~Gfi~~~~S~R~v~--~~~a~~l~~~~~---~~~VgVf~~~~~~~I~~~~~--~~~ld~vQL 77 (197)
T PF00697_consen 5 GITRPEDARLAAELGADYLGFIFYPKSPRYVS--PDQARELVSAVP---PKIVGVFVNQSPEEILEIVE--ELGLDVVQL 77 (197)
T ss_dssp ---SHHHHHHHHHHTSSEEEEE--TTCTTB----HHHHHHHHCCSS---SSEEEEESSS-HHHHHHHHH--HCTESEEEE
T ss_pred CCCcHHHHHHHHHcCCCEEeeecCCCCCCccC--HHHHHHHHHhcC---CCEEEEEcCCCHHHHHHHHH--HcCCCEEEE
Confidence 4444444467888999763322221 22221 111111112111 214444544 4555554332 235799999
Q ss_pred ecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcC-ccEEEeccCcccccC
Q 013813 189 NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKD 267 (436)
Q Consensus 189 N~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG-~d~I~VHgRt~~~~~ 267 (436)
|- .. -.+.++.++. ++|+.-.++...+.+. .+.+.... +|++.+.++.
T Consensus 78 HG-------------~e-------~~e~~~~l~~--~~~vi~~~~v~~~~~~----~~~~~~~~~~d~~LlD~~~----- 126 (197)
T PF00697_consen 78 HG-------------DE-------SPEYIKLLRA--GLPVIKAIHVDKDIDL----LDYLERYESVDYFLLDSGS----- 126 (197)
T ss_dssp -S-------------GG--------HHHHHHHHT--TSEEEEEEEESSCHSC----CHHCHCSTT-SEEEEESSS-----
T ss_pred CC-------------CC-------CHHHHHHhhc--CceEEEEEEeCCccch----HHHHHhcccccEEeEccCC-----
Confidence 92 11 2223333442 5688877777654331 12222222 3889888332
Q ss_pred CCCC-ccCHHHHHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCcc
Q 013813 268 GKKF-RADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325 (436)
Q Consensus 268 ~~~g-~ad~~~i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~l 325 (436)
+++| ..||+.+..+.+. .+.|++..|||. ++.+.++++..+..||=+.+|.=.+|-.
T Consensus 127 GgtG~~~dw~~~~~~~~~~~~~p~iLAGGl~-p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 127 GGTGKTFDWSLLKKIVESYSPKPVILAGGLN-PENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp TSSSS---GGGGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred CcCCcccCHHHhhhhhhhcccCcEEEEcCCC-hHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 2222 5799999888874 389999999997 6888899987799999998887666554
No 427
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.86 E-value=0.67 Score=46.21 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
-+-|++--+ .++++...+++ .+|.+.| |+.++++.+++. ++. .++.||-+|--.+
T Consensus 86 ~glpvvTeV--~~~~q~~~vae----~~DilQI--------------gAr~~rqtdLL~----a~~-~tgkpV~lKkGq~ 140 (290)
T PLN03033 86 YDLPIVTDV--HESSQCEAVGK----VADIIQI--------------PAFLCRQTDLLV----AAA-KTGKIINIKKGQF 140 (290)
T ss_pred HCCceEEee--CCHHHHHHHHh----hCcEEee--------------CcHHHHHHHHHH----HHH-ccCCeEEeCCCCC
Confidence 456777665 34555544443 3577765 566666655544 443 4589999996667
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCC-CccCHHHHHHHHhhCCCcEEE
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLA 291 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~-g~ad~~~i~~ik~~~~iPVia 291 (436)
.+.++....++.+.+.|-..|.+.-|-.. . ++. ...|+..+..+++ .++|||.
T Consensus 141 ~t~~e~~~aaeki~~~GN~~viLcERG~t-F-gy~~lv~D~r~ip~mk~-~~lPVI~ 194 (290)
T PLN03033 141 CAPSVMRNSAEKVRLAGNPNVMVCERGTM-F-GYNDLIVDPRNLEWMRE-ANCPVVA 194 (290)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeCCCC-c-CCCCcccchhhhHHHHh-cCCCEEE
Confidence 78889999999999999999988766442 1 222 2368888888875 7899985
No 428
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=92.74 E-value=0.88 Score=47.64 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=82.2
Q ss_pred cCCCcEEEEecC-CCchhhhcCcccccccCChHHHHHHHHHHhccc--CccEEEEeccCCChhhHHHHHHHHHHcCccEE
Q 013813 180 EPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL 256 (436)
Q Consensus 180 ~~g~D~IdLN~G-CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~--~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I 256 (436)
+.||..+-+.+| .|. -| ...++.-.+.|+++++.+ ++.+.|-...+++.++++++++.+++.|+.+|
T Consensus 170 ~~Gf~~~Kik~~~g~~-------~g---~~~~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wi 239 (394)
T PRK15440 170 EMGFIGGKMPLHHGPA-------DG---DAGLRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWI 239 (394)
T ss_pred hCCCCEEEEcCCcCcc-------cc---hHHHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcce
Confidence 458888888753 121 01 012455567778888877 46788887778899999999999999998876
Q ss_pred EeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CCCCHHHHHHHHHhcCcceeee
Q 013813 257 AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 257 ~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI~s~eda~~~l~~tGaDgVmI 315 (436)
++... +-|++..+++++.+++||...+ .+.+..+++++++...+|.|++
T Consensus 240 -------EEPl~---~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~ 290 (394)
T PRK15440 240 -------EECLP---PDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQP 290 (394)
T ss_pred -------eCCCC---cccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence 22111 3478888999998876554433 4778999999999867887764
No 429
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=92.73 E-value=0.97 Score=43.17 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=83.4
Q ss_pred EEEecCCCHHHHHHHHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc---CC
Q 013813 161 FVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---FP 236 (436)
Q Consensus 161 ivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl---g~ 236 (436)
.|.|.+.+.+++.+.++.+.. ++|.|||-+.+= .. ...+.+.+.+..+++.+++|+.+=+|. |.
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l---------~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG 68 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYL---------EN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG 68 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGS---------TT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccc---------cc---cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence 378899999999888877665 999999997431 11 456788889999988889999999886 21
Q ss_pred ----ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc----CCCCHHHHHHHHH--
Q 013813 237 ----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLE-- 306 (436)
Q Consensus 237 ----~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG----GI~s~eda~~~l~-- 306 (436)
+.++-.++.+.+.+.|+++|.|--.... +...........+..||++= +-.+.+++.+.++
T Consensus 69 ~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~---------~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~ 139 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAIRLGPDYIDIELDLFP---------DDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEM 139 (224)
T ss_dssp SBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCH---------HHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEEcccch---------hHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHH
Confidence 2355678888888999999988543211 01111233334466676653 3445554544443
Q ss_pred -hcCcceeeee
Q 013813 307 -ETGCEGVLSA 316 (436)
Q Consensus 307 -~tGaDgVmIG 316 (436)
..|||.|=++
T Consensus 140 ~~~gadivKia 150 (224)
T PF01487_consen 140 QELGADIVKIA 150 (224)
T ss_dssp HHTT-SEEEEE
T ss_pred HhcCCCeEEEE
Confidence 3477765444
No 430
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=92.65 E-value=1.1 Score=44.04 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=49.4
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 246 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak 246 (436)
+++...+-| +.+++|+|.||||++...+.... -......+.+..+++.+++.+++||++-..- .+.++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~----~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~-------~~v~~ 90 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTRPGAEP----VSVEEELERVIPVLRALAGEPDVPISVDTFN-------AEVAE 90 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc----CCHHHHHHHHHHHHHHHHhcCCCeEEEeCCc-------HHHHH
Confidence 556555555 56788999999998765431100 0011234567888888888778999887321 23455
Q ss_pred HHHHcCccEE
Q 013813 247 MLEDAGCSLL 256 (436)
Q Consensus 247 ~le~aG~d~I 256 (436)
.+.++|++.|
T Consensus 91 aaL~~g~~iI 100 (258)
T cd00423 91 AALKAGADII 100 (258)
T ss_pred HHHHhCCCEE
Confidence 5566776655
No 431
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.61 E-value=0.98 Score=42.30 Aligned_cols=88 Identities=16% Similarity=0.331 Sum_probs=64.7
Q ss_pred HHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCC
Q 013813 216 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 295 (436)
Q Consensus 216 Iv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI 295 (436)
+++.+.+. ++..=+|. .+.+++.++++.+.+.|+..|.+.-++.. ..+.++.+++....-.++.|-+
T Consensus 5 ~~~~l~~~---~~~~v~r~-~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~---------~~e~~~~~~~~~~~~~~g~gtv 71 (187)
T PRK07455 5 WLAQLQQH---RAIAVIRA-PDLELGLQMAEAVAAGGMRLIEITWNSDQ---------PAELISQLREKLPECIIGTGTI 71 (187)
T ss_pred HHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCCC---------HHHHHHHHHHhCCCcEEeEEEE
Confidence 44444333 44444554 46688899999999999999988655532 2466777777666656888999
Q ss_pred CCHHHHHHHHHhcCcceeeeeh
Q 013813 296 RHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmIGR 317 (436)
.+.++++.+++. |||+|++|-
T Consensus 72 l~~d~~~~A~~~-gAdgv~~p~ 92 (187)
T PRK07455 72 LTLEDLEEAIAA-GAQFCFTPH 92 (187)
T ss_pred EcHHHHHHHHHc-CCCEEECCC
Confidence 999999999986 999998774
No 432
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=92.48 E-value=3.2 Score=43.04 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=85.3
Q ss_pred CCCCCEEEEecC----CCHHHHHHHHHHH-cCCCcEEEEe--cCCCchhhhcCcccccccCChHHHHHHHHHHhcccC--
Q 013813 155 KEDRPLFVQFCA----NDPEILLNAARRV-EPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-- 225 (436)
Q Consensus 155 ~~e~plivQL~g----~d~e~~~~AA~~v-~~g~D~IdLN--~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-- 225 (436)
-.++|++.-++- -|++.+++.+..+ ..|+|+|-.. +|-+. -..+.++.+.+.+.++.+.+.++
T Consensus 127 v~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~--------~~~~eER~~~v~~av~~a~~~TG~~ 198 (367)
T cd08205 127 VHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP--------YAPFEERVRACMEAVRRANEETGRK 198 (367)
T ss_pred CCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc--------cCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 457999988764 4699999999654 5689998543 22111 01122344556666666665554
Q ss_pred ccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEc--c---------C
Q 013813 226 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN--G---------N 294 (436)
Q Consensus 226 iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVian--G---------G 294 (436)
.++.+- +..+.++.++.++.++++|++++-|-.-.. + +..+..+++..++||.+- + .
T Consensus 199 ~~y~~n--it~~~~e~i~~a~~a~~~Gad~vmv~~~~~----g------~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~~ 266 (367)
T cd08205 199 TLYAPN--ITGDPDELRRRADRAVEAGANALLINPNLV----G------LDALRALAEDPDLPIMAHPAFAGALSRSPDY 266 (367)
T ss_pred ceEEEE--cCCCHHHHHHHHHHHHHcCCCEEEEecccc----c------ccHHHHHHhcCCCeEEEccCcccccccCCCC
Confidence 334444 333458899999999999999987753321 1 122344444446666531 1 1
Q ss_pred CCCHHHHHHHHHhcCcceeeee
Q 013813 295 VRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 295 I~s~eda~~~l~~tGaDgVmIG 316 (436)
+.+..-..++.+..|+|.+..+
T Consensus 267 g~~~~~~~kl~RlaGad~~~~~ 288 (367)
T cd08205 267 GSHFLLLGKLMRLAGADAVIFP 288 (367)
T ss_pred cCCHHHHHHHHHHcCCCccccC
Confidence 3344555566666788877654
No 433
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=92.41 E-value=0.47 Score=45.21 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccEEEEec
Q 013813 173 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIR 233 (436)
Q Consensus 173 ~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPVsVKiR 233 (436)
.+|.+.+++|+|.||||.+.-.+.. -........+.+..+++.+++ ..++||++-..
T Consensus 23 ~~a~~~~~~GAdiIDIg~~st~p~~----~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~ 80 (210)
T PF00809_consen 23 KRAREQVEAGADIIDIGAESTRPGA----TPVSEEEEMERLVPVLQAIREENPDVPLSIDTF 80 (210)
T ss_dssp HHHHHHHHTT-SEEEEESSTSSTTS----SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHhcCCEEEecccccCCCC----CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC
Confidence 3455678899999999987633211 011222345677788888876 56899999853
No 434
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=92.22 E-value=1.4 Score=46.22 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=61.7
Q ss_pred HHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCc---ccccC-CCCCccC----HHHHHHHHhhCCCc
Q 013813 218 EKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT---RDEKD-GKKFRAD----WNAIKAVKNALRIP 288 (436)
Q Consensus 218 ~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt---~~~~~-~~~g~ad----~~~i~~ik~~~~iP 288 (436)
+.+++.. +.||.+-+--..+.++..++++.+++.|+|+|.+---. ...+. +....-+ .+.++.+++.+++|
T Consensus 91 ~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~P 170 (420)
T PRK08318 91 RRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLP 170 (420)
T ss_pred HHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCc
Confidence 3343333 47777775332267788999999999999999883211 11000 0000123 34456666667888
Q ss_pred EE--EccCCCCHHHHHHHHHhcCcceeee
Q 013813 289 VL--ANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 289 Vi--anGGI~s~eda~~~l~~tGaDgVmI 315 (436)
|+ ..-++.+..++.+.+++.|+|+|.+
T Consensus 171 v~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 171 VIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred EEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 76 4567777778878777789999984
No 435
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=92.21 E-value=5.1 Score=42.22 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=90.1
Q ss_pred CCCCCEEEEecC---CCHHHHHHHH-HHHcCC-CcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhc-ccCccE
Q 013813 155 KEDRPLFVQFCA---NDPEILLNAA-RRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPV 228 (436)
Q Consensus 155 ~~e~plivQL~g---~d~e~~~~AA-~~v~~g-~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~-~~~iPV 228 (436)
....|+..|+.- .+++++..-+ +.+..| +..+.+ +|-. +..+....+.+.+-++++++ ..+..+
T Consensus 162 ~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~Kk-vG~~---------~~k~~~~~~~~~~ri~~lr~~g~~~~l 231 (408)
T TIGR01502 162 TNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVEE-LGLD---------GEKLLEYVKWLRDRIIKLGREGYAPIF 231 (408)
T ss_pred CCceeEEEEeeccCCCCHHHHHHHHHHHHhccCccceee-ecCC---------HHHhhhhHHHHHHHHHHhhccCCCCeE
Confidence 355788888752 4567776555 555665 666554 4421 11122223344455555662 224456
Q ss_pred EEEecc------CCChhhHHHHHHHHHHcCccE-EEeccCcccccCCC-CCccCHHHHHHHHhh-----CCCcEEEccCC
Q 013813 229 SCKIRV------FPNLQDTIKYAKMLEDAGCSL-LAVHGRTRDEKDGK-KFRADWNAIKAVKNA-----LRIPVLANGNV 295 (436)
Q Consensus 229 sVKiRl------g~~~~d~~~~ak~le~aG~d~-I~VHgRt~~~~~~~-~g~ad~~~i~~ik~~-----~~iPVianGGI 295 (436)
.|-..- +|+.+++.++++.+++..... +.+ ++.... ....+++..+++++. +++||++.=.+
T Consensus 232 ~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~~i-----EqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~ 306 (408)
T TIGR01502 232 HIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHLRI-----EGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWC 306 (408)
T ss_pred EEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCeEE-----ecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCC
Confidence 666553 678888999999998742211 222 211100 001248888899887 58999999999
Q ss_pred CCHHHHHHHHHhcCcceeee
Q 013813 296 RHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 296 ~s~eda~~~l~~tGaDgVmI 315 (436)
.+++|+.++++...||.|.+
T Consensus 307 ~t~~d~~~~i~~~a~d~v~i 326 (408)
T TIGR01502 307 NTVEDVKFFTDAKAGHMVQI 326 (408)
T ss_pred CCHHHHHHHHHhCCCCEEEe
Confidence 99999999999888888875
No 436
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=92.19 E-value=0.92 Score=45.12 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=74.7
Q ss_pred ccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc-cEEEe-ccCcccccCCCCCccCHHHHH
Q 013813 202 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAV-HGRTRDEKDGKKFRADWNAIK 279 (436)
Q Consensus 202 ~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~-d~I~V-HgRt~~~~~~~~g~ad~~~i~ 279 (436)
-|+.++.+..++.++ ..++.||.+|-......++....++.....|+ ..+.+ |-..+..........|+..+.
T Consensus 113 IgAr~~~n~~ll~~a-----s~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~~ 187 (270)
T PF00793_consen 113 IGARLMENQDLLEAA-----SGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLRGGYGPNYNVLDIAAVP 187 (270)
T ss_dssp E-GGGTTCHHHHHHH-----HCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEEESSSSSSEEHHTTHHH
T ss_pred ECcchhcCHHHHHHh-----ccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeeeccccccccchhHHHHH
Confidence 478888887776544 35789999997777777888888899999995 66544 432222211111245778888
Q ss_pred HHHhhCCCcEEEcc----CCCC-------HHHHHHHHHhcCcceeeeeh
Q 013813 280 AVKNALRIPVLANG----NVRH-------MEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 280 ~ik~~~~iPVianG----GI~s-------~eda~~~l~~tGaDgVmIGR 317 (436)
.+++..++||+..- +-.+ +..+.+.+.. |+||+||=.
T Consensus 188 ~~~~~~~lpVivD~SH~~~~~~~~~q~~V~~~a~aaia~-GidGlmiEs 235 (270)
T PF00793_consen 188 IMKKKTHLPVIVDPSHANSRKDGGRQELVPPLARAAIAA-GIDGLMIES 235 (270)
T ss_dssp HHHHHTSSEEEEEHHHHTTTCGGGGHCGHHHHHHHHHHH-TESEEEEEE
T ss_pred HHHHhcCCCEEECchhhhccccCCchhhHHHHHHHHHhh-cCCEEEEee
Confidence 88888889998754 2333 5666677765 999999975
No 437
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=92.15 E-value=2.4 Score=39.76 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=71.5
Q ss_pred EEecCCC-HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcc-cCccEEEEeccCCChh
Q 013813 162 VQFCAND-PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNLQ 239 (436)
Q Consensus 162 vQL~g~d-~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~-~~iPVsVKiRlg~~~~ 239 (436)
++|||-. +++... .++.|+|.|-+-+--+.+. .-+++.+.++.+.+... ..++|++. +
T Consensus 1 vKiCGi~~~ed~~~---a~~~Gvd~ig~i~~~~s~R----------~v~~~~a~~l~~~~~~~~~~V~v~vn-------~ 60 (203)
T cd00405 1 VKICGITTLEDALA---AAEAGADAIGFIFAPKSPR----------YVSPEQAREIVAALPPFVKRVGVFVN-------E 60 (203)
T ss_pred CEECCCCCHHHHHH---HHHcCCCEEEEecCCCCCC----------CCCHHHHHHHHHhCCCCCcEEEEEeC-------C
Confidence 4577754 443332 2456899999986432210 12466677777666542 23555544 2
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHH-hcCcceeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE-ETGCEGVLS 315 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~-~tGaDgVmI 315 (436)
+..++.+.+.+.|+|+|++|+-. +.+.++.+++..+.+++-.=++.+..+...... ..++|.+.+
T Consensus 61 ~~~~i~~ia~~~~~d~Vqlhg~e-----------~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~ 126 (203)
T cd00405 61 DLEEILEIAEELGLDVVQLHGDE-----------SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILL 126 (203)
T ss_pred CHHHHHHHHHhcCCCEEEECCCC-----------CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEE
Confidence 33345556678999999999753 124577777766666664445555555442211 248998864
No 438
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.15 E-value=2.2 Score=40.65 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc
Q 013813 209 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 288 (436)
Q Consensus 209 ~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP 288 (436)
+.+.+.++++.+++..+.|+.+.+-.........++++.+.++|++.|++++.. ..+.++.+++ .+++
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~-----------~~~~~~~~~~-~~i~ 104 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGP-----------PAEVVERLKA-AGIK 104 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCCC-----------CHHHHHHHHH-cCCE
Confidence 567788888888766556766665443211356678888999999999997541 1244556554 4677
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
++. .+.+.++++++.+. |+|++.+
T Consensus 105 ~i~--~v~~~~~~~~~~~~-gad~i~~ 128 (236)
T cd04730 105 VIP--TVTSVEEARKAEAA-GADALVA 128 (236)
T ss_pred EEE--eCCCHHHHHHHHHc-CCCEEEE
Confidence 765 36788888887774 8999876
No 439
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=92.10 E-value=3.2 Score=39.58 Aligned_cols=127 Identities=19% Similarity=0.174 Sum_probs=77.2
Q ss_pred EEEecCCC-HHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChh
Q 013813 161 FVQFCAND-PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ 239 (436)
Q Consensus 161 ivQL~g~d-~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~ 239 (436)
.++|||-. +++...+ .+.|+|.|-+.+-...+. .=+++.+.+|.+.+...+ .+|.|- .. .
T Consensus 4 ~vKICGi~~~eda~~~---~~~Gad~iGfI~~~~S~R----------~V~~~~a~~i~~~~~~~i-~~VgVf--~~---~ 64 (210)
T PRK01222 4 RVKICGITTPEDAEAA---AELGADAIGFVFYPKSPR----------YVSPEQAAELAAALPPFV-KVVGVF--VN---A 64 (210)
T ss_pred eEEECCCCcHHHHHHH---HHcCCCEEEEccCCCCCC----------cCCHHHHHHHHHhCCCCC-CEEEEE--eC---C
Confidence 48999964 4443332 346889888875332211 124677888888765322 344444 11 3
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHh-cCcceeeeeh
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAE 317 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~-tGaDgVmIGR 317 (436)
+..++.+.+++.|.+.|.+||-. +.+.++.+++..+++|+-.=.|.+..++....+. ..||.+++-.
T Consensus 65 ~~~~i~~~~~~~~~d~vQLHg~e-----------~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds 132 (210)
T PRK01222 65 SDEEIDEIVETVPLDLLQLHGDE-----------TPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDA 132 (210)
T ss_pred CHHHHHHHHHhcCCCEEEECCCC-----------CHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcC
Confidence 44455667789999999999732 2356778887767887766666655555444332 2578777643
No 440
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=91.97 E-value=5.1 Score=40.65 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=77.7
Q ss_pred ecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCCChhhHH
Q 013813 164 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 242 (436)
Q Consensus 164 L~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~ 242 (436)
|...+++++++-++.. .||..+-+..|- .+++.-.+.++++++.+ ++.+.+-..-+|+.+++.
T Consensus 111 l~~~~~~~~~~~a~~~-~Gf~~~KvKvG~---------------~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~ 174 (322)
T PRK05105 111 LCYGDPDELILKLADM-PGEKVAKVKVGL---------------YEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQ 174 (322)
T ss_pred eecCCHHHHHHHHHHc-CCCCEEEEEECC---------------CCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 3445777777666544 788877776541 23444456666666654 334444444468889999
Q ss_pred HHHHHHHH---cCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 243 KYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 243 ~~ak~le~---aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
++++.+++ .++.+| +|. . .+++..+++++..++||.+.=.+.+.++. ..+. .++|.|
T Consensus 175 ~~~~~l~~~~~~~i~~i-------EqP--~---~~~~~~~~l~~~~~~PIa~DEs~~~~~~~-~~~~-~~~d~i 234 (322)
T PRK05105 175 QFAKYVPPDYRHRIAFL-------EEP--C---KTPDDSRAFARATGIAIAWDESLREPDFQ-FEAE-PGVRAI 234 (322)
T ss_pred HHHHHhhhhcCCCccEE-------ECC--C---CCHHHHHHHHHhCCCCEEECCCCCchhhh-hhhc-CCCCEE
Confidence 99999998 777776 221 1 12445688888899999998889887643 3333 367766
No 441
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.93 E-value=24 Score=39.17 Aligned_cols=129 Identities=12% Similarity=0.182 Sum_probs=76.7
Q ss_pred CCCCCcHH------HHHHHHHhCCCe--EEeCcccchhhccChhhhhhhhhccCCCCCEEEE--ec---CCCHHHHHHHH
Q 013813 110 MVDNSELP------FRMLCRRYGAEA--AYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQ--FC---ANDPEILLNAA 176 (436)
Q Consensus 110 M~gvtd~~------fR~l~~~~Ga~l--~~Temisa~~l~~~~~~~~~~~~~~~~e~plivQ--L~---g~d~e~~~~AA 176 (436)
.+|++..+ |=+.+.++|.+. +|..+-..+.+... . ...+ ..+.-+... +. .++++.+.+.+
T Consensus 87 ~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~---i-~~~k--~~G~~~~~~i~yt~sp~~t~e~~~~~a 160 (596)
T PRK14042 87 LLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVA---I-DAIK--SHKKHAQGAICYTTSPVHTLDNFLELG 160 (596)
T ss_pred ccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHH---H-HHHH--HcCCEEEEEEEecCCCCCCHHHHHHHH
Confidence 56777777 666777789886 55443222221111 1 1111 112211121 22 36789999999
Q ss_pred HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccE
Q 013813 177 RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 255 (436)
Q Consensus 177 ~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~ 255 (436)
+.+. .|+|.|-|- |-.| +-.|..+.++++++++.+++||.+= ...+..-...-.-.+.++||+.
T Consensus 161 k~l~~~Gad~I~Ik----------DtaG---~l~P~~v~~lv~alk~~~~ipi~~H--~Hnt~Gla~an~laAieaGad~ 225 (596)
T PRK14042 161 KKLAEMGCDSIAIK----------DMAG---LLTPTVTVELYAGLKQATGLPVHLH--SHSTSGLASICHYEAVLAGCNH 225 (596)
T ss_pred HHHHHcCCCEEEeC----------Cccc---CCCHHHHHHHHHHHHhhcCCEEEEE--eCCCCCcHHHHHHHHHHhCCCE
Confidence 7664 589877664 3334 3469999999999999988777665 3333333333334456899998
Q ss_pred EEec
Q 013813 256 LAVH 259 (436)
Q Consensus 256 I~VH 259 (436)
|...
T Consensus 226 iD~a 229 (596)
T PRK14042 226 IDTA 229 (596)
T ss_pred EEec
Confidence 8653
No 442
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=91.84 E-value=13 Score=36.97 Aligned_cols=195 Identities=13% Similarity=0.095 Sum_probs=106.4
Q ss_pred EEccCCC---CCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhh----hhhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 106 IVAPMVD---NSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRN----EEFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 106 ~lAPM~g---vtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~----~~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
++.|+-. +-...+|++++.+ |.+.++.--.+.....-+...+. ...+......|+++++++.+.++..+.
T Consensus 9 ~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~ 88 (292)
T PRK03170 9 LVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIEL 88 (292)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHH
Confidence 4455532 3335677766654 77665532222221111211111 112233456799999999999999999
Q ss_pred HHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec---cCCChhhHHHHHHHHHHc
Q 013813 176 ARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR---VFPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 176 A~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR---lg~~~~d~~~~ak~le~a 251 (436)
|+.++. |+|+|-+-. |. |. ....+.+.+-.+.|.+.+++||.+=-- .|.+.. .++.+.+.+.
T Consensus 89 a~~a~~~G~d~v~~~p--P~-------~~---~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~--~~~~~~L~~~ 154 (292)
T PRK03170 89 TKFAEKAGADGALVVT--PY-------YN---KPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDIL--PETVARLAEH 154 (292)
T ss_pred HHHHHHcCCCEEEECC--Cc-------CC---CCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCC--HHHHHHHHcC
Confidence 988765 999998853 22 21 124566777788888888899987632 222211 3445555433
Q ss_pred CccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC-cEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 252 G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i-PVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+ .| .|-. + . ..|...+..+.+..+- -.+.+|. -..+...+.. |++|++.|.+.+ .|.++.++-
T Consensus 155 p--~v--~giK-~---s---~~d~~~~~~~~~~~~~~~~v~~G~---d~~~~~~l~~-G~~G~is~~~n~-~P~~~~~l~ 218 (292)
T PRK03170 155 P--NI--VGIK-E---A---TGDLERVSELIELVPDDFAVYSGD---DALALPFLAL-GGVGVISVAANV-APKEMAEMC 218 (292)
T ss_pred C--CE--EEEE-E---C---CCCHHHHHHHHHhCCCCeEEEECC---hHhHHHHHHc-CCCEEEEhHHhh-hHHHHHHHH
Confidence 2 22 1111 1 1 1245556666554321 2334442 1223344554 999999887753 377776654
No 443
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=91.76 E-value=2 Score=42.47 Aligned_cols=179 Identities=20% Similarity=0.300 Sum_probs=94.5
Q ss_pred HHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEEe-Ccccchhh--ccChh-------hhhhhhhccCCCCCEEEEe-
Q 013813 96 HWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYT-PMLHSRIF--TESEK-------YRNEEFATCKEDRPLFVQF- 164 (436)
Q Consensus 96 ~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~T-emisa~~l--~~~~~-------~~~~~~~~~~~e~plivQL- 164 (436)
-++.-|++ |. |...=|.+|-+++.+.|+|++.- -.+.--.+ ..... +-...+....+...+++-+
T Consensus 10 ~~k~~g~k-i~---~lTaYD~~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmP 85 (261)
T PF02548_consen 10 KMKQKGEK-IV---MLTAYDYPSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMP 85 (261)
T ss_dssp HHHHHT---EE---EEE--SHHHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--
T ss_pred HHHhCCCc-EE---EEecccHHHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCC
Confidence 34444553 33 66777899999999999998552 22211011 00000 0001122222233334332
Q ss_pred -cC--CCHHHHHHHH-HHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc-----
Q 013813 165 -CA--NDPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 234 (436)
Q Consensus 165 -~g--~d~e~~~~AA-~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl----- 234 (436)
+. .++++..+.| ++++ .|+|.|-|-.|. ...++|+++.+. ++||.-=|-+
T Consensus 86 f~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~-------------------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~ 145 (261)
T PF02548_consen 86 FGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA-------------------EIAETIKALVDA-GIPVMGHIGLTPQSV 145 (261)
T ss_dssp TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG-------------------GGHHHHHHHHHT-T--EEEEEES-GGGH
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEeccch-------------------hHHHHHHHHHHC-CCcEEEEecCchhhe
Confidence 11 2455555555 6776 689999998321 234455555433 7899877644
Q ss_pred ---------CCChh---hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHH
Q 013813 235 ---------FPNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQ 302 (436)
Q Consensus 235 ---------g~~~~---d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~ 302 (436)
|.+.+ ..++-|+.++++|+-.|.+-... -+..+.|.+.++||+|+.|.=
T Consensus 146 ~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp------------~~la~~It~~l~IPtIGIGaG------- 206 (261)
T PF02548_consen 146 HQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVP------------AELAKAITEALSIPTIGIGAG------- 206 (261)
T ss_dssp HHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBB------------HHHHHHHHHHSSS-EEEESS--------
T ss_pred eccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeecCH------------HHHHHHHHHhCCCCEEecCCC-------
Confidence 22333 44667888999999999886442 256788999999999988842
Q ss_pred HHHHhcCcceeee-ehHHhhC
Q 013813 303 KCLEETGCEGVLS-AESLLEN 322 (436)
Q Consensus 303 ~~l~~tGaDgVmI-GRgal~n 322 (436)
.+|||-++ ---+|+-
T Consensus 207 -----~~cDGQvLV~~DlLG~ 222 (261)
T PF02548_consen 207 -----PGCDGQVLVSHDLLGL 222 (261)
T ss_dssp -----STSSEEEE-HHHHTTS
T ss_pred -----CCCCceEEeHhhhhcc
Confidence 27888543 3334443
No 444
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=91.71 E-value=2.1 Score=43.04 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=84.8
Q ss_pred HHHHc-CCCcEEEEecCCCchhhhcCccc-ccccCChHHHHHHHHHHhcccCccEEEEeccCCC-hhhHHHHHHHHHHcC
Q 013813 176 ARRVE-PYCDYVDINLGCPQRIARRGNYG-AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAG 252 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~GCP~~~~~~~~~G-s~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~-~~d~~~~ak~le~aG 252 (436)
|++++ .||++|=+--.+ ....-|+- ..+ -..+.+.+.++.|.+.+++||++-+-.|.. ..+....++.++++|
T Consensus 28 Ari~e~aGf~ai~~ss~~---va~slG~pD~g~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aG 103 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFE---LSASYAVPDANI-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAG 103 (290)
T ss_pred HHHHHHcCCCEEEECHHH---HHHHCCCCCccc-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcC
Confidence 44454 489988775211 11000111 112 246677788888889999999999988753 335667789999999
Q ss_pred ccEEEeccCcccccCC----C-CCccCH-HHHHHHHh---h-CCCcEEEccCCCC------HHHHH----HHHHhcCcce
Q 013813 253 CSLLAVHGRTRDEKDG----K-KFRADW-NAIKAVKN---A-LRIPVLANGNVRH------MEDVQ----KCLEETGCEG 312 (436)
Q Consensus 253 ~d~I~VHgRt~~~~~~----~-~g~ad~-~~i~~ik~---~-~~iPVianGGI~s------~eda~----~~l~~tGaDg 312 (436)
+.+|+|-......+.+ . ..-.+. +.+.+|+. . .+.+++.|..... .+++. .+.+ .|||+
T Consensus 104 vagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~e-AGAD~ 182 (290)
T TIGR02321 104 ASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEE-AGADA 182 (290)
T ss_pred CeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHH-cCCCE
Confidence 9999995433211111 0 111222 33444443 2 2344555443322 24443 2233 49999
Q ss_pred eeeehHHhhCCccchhhhh
Q 013813 313 VLSAESLLENPALFAGFRT 331 (436)
Q Consensus 313 VmIGRgal~nP~lf~~i~~ 331 (436)
|++- +.+.++..+.++..
T Consensus 183 ifv~-~~~~~~~ei~~~~~ 200 (290)
T TIGR02321 183 ILIH-SRQKTPDEILAFVK 200 (290)
T ss_pred EEec-CCCCCHHHHHHHHH
Confidence 9993 44566776665543
No 445
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=91.69 E-value=8.5 Score=42.66 Aligned_cols=49 Identities=14% Similarity=0.400 Sum_probs=35.1
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc--eeeeehHHhhCC
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLENP 323 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD--gVmIGRgal~nP 323 (436)
..||+.++.+. .+.|++..|||. ++.+.++++..... ||=+.+|.=..|
T Consensus 147 ~fdw~~~~~~~--~~~p~iLAGGL~-peNV~~ai~~~~p~~~gVDvsSGvE~~p 197 (610)
T PRK13803 147 SFDWEKFYNYN--FKFPFFLSGGLS-PTNFDRIINLTHPQILGIDVSSGFEDSP 197 (610)
T ss_pred ccChHHhhhcc--cCCcEEEEeCCC-HHHHHHHHhhhCCCceEEEccCcccCCC
Confidence 36898775442 357999999997 68888888866666 777777664334
No 446
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.66 E-value=0.68 Score=46.38 Aligned_cols=87 Identities=14% Similarity=0.263 Sum_probs=59.6
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGaD 311 (436)
|.+...++++.+.+.|+++|.+.|-|.+... .+..-..+.++.+.+.+ ++||++.=|-.+.+++.++. +..|+|
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~-Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGS-LTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCccccc-CCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 5566778889999999999999988876432 11111234455555544 58998666656666665443 346999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+.-..+..|.
T Consensus 98 ~v~v~pP~y~~~~ 110 (294)
T TIGR02313 98 AAMVIVPYYNKPN 110 (294)
T ss_pred EEEEcCccCCCCC
Confidence 9999998887774
No 447
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=91.65 E-value=1.7 Score=44.25 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=61.7
Q ss_pred cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEec
Q 013813 180 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 259 (436)
Q Consensus 180 ~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VH 259 (436)
+.|+|.|+||+-...... + -..++.+..+++.|.+.+++|+.|-.-... ..+..-+-..++.++=....|.
T Consensus 87 ~~GAd~Idl~~~s~dp~~-~-------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~-~kD~evleaale~~~g~~pLIn 157 (319)
T PRK04452 87 EYGADMITLHLISTDPNG-K-------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNP-EKDAEVLEKVAEAAEGERCLLG 157 (319)
T ss_pred HhCCCEEEEECCCCCccc-c-------cchHHHHHHHHHHHHHhCCCCEEEecCCCC-CCCHHHHHHHHHHhCCCCCEEE
Confidence 458999999962221100 0 123566888999998899999986632211 1233333333444432223344
Q ss_pred cCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc--CCCCHHHHHHHHHhcCc
Q 013813 260 GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGC 310 (436)
Q Consensus 260 gRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG--GI~s~eda~~~l~~tGa 310 (436)
+-+.+ +|+.+..+....+.+|++-+ +|.-..++...+...|.
T Consensus 158 Sat~e---------n~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~~~Gi 201 (319)
T PRK04452 158 SAEED---------NYKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLTELGV 201 (319)
T ss_pred ECCHH---------HHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHHHcCC
Confidence 33321 46777777777788888775 33333333333444455
No 448
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=91.64 E-value=2.5 Score=43.21 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=71.4
Q ss_pred cCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCcc---EEEeccCccccc
Q 013813 190 LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS---LLAVHGRTRDEK 266 (436)
Q Consensus 190 ~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d---~I~VHgRt~~~~ 266 (436)
+|||.-+ -||.-+.+..+++.+-+ .++||.++.-. .+.++....++.+.+.|.. .+.+|.-+.-+.
T Consensus 108 ~~v~~~K-----IaS~~~~n~pLL~~~A~-----~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~ 176 (329)
T TIGR03569 108 LGVPRFK-----IPSGEITNAPLLKKIAR-----FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPA 176 (329)
T ss_pred cCCCEEE-----ECcccccCHHHHHHHHh-----cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCC
Confidence 4566532 35666788888776643 48999999544 3677888888888899985 667786543221
Q ss_pred CCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcc
Q 013813 267 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311 (436)
Q Consensus 267 ~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaD 311 (436)
.....|+..|..+++..++||.+++=-....-....... ||+
T Consensus 177 --~~~~~nL~~I~~Lk~~f~~pVG~SdHt~G~~~~~aAval-GA~ 218 (329)
T TIGR03569 177 --PFEDVNLNAMDTLKEAFDLPVGYSDHTLGIEAPIAAVAL-GAT 218 (329)
T ss_pred --CcccCCHHHHHHHHHHhCCCEEECCCCccHHHHHHHHHc-CCC
Confidence 112578999999999889999987533333333333332 666
No 449
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=91.59 E-value=0.58 Score=47.09 Aligned_cols=43 Identities=28% Similarity=0.635 Sum_probs=37.5
Q ss_pred ccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 272 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 272 ~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
..+|+-++.+++.+++||+.-| |-+.+||..+.+. |++|+++.
T Consensus 209 Sl~W~Di~wLr~~T~LPIvvKG-ilt~eDA~~Ave~-G~~GIIVS 251 (363)
T KOG0538|consen 209 SLSWKDIKWLRSITKLPIVVKG-VLTGEDARKAVEA-GVAGIIVS 251 (363)
T ss_pred CCChhhhHHHHhcCcCCeEEEe-ecccHHHHHHHHh-CCceEEEe
Confidence 3589999999999999999876 6678999999996 99999874
No 450
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.50 E-value=2.7 Score=43.08 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=56.3
Q ss_pred HHHHHHHHhcc-cCccEEEEeccC------CChhhHHHHHHHHHHcCccEEEecc--Ccc-cccCCCCCccCHHHHHHHH
Q 013813 213 VKSLVEKLALN-LNVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHG--RTR-DEKDGKKFRADWNAIKAVK 282 (436)
Q Consensus 213 v~eIv~av~~~-~~iPVsVKiRlg------~~~~d~~~~ak~le~aG~d~I~VHg--Rt~-~~~~~~~g~ad~~~i~~ik 282 (436)
+...++.+++. .++||.|-|--. ...++..+.++.+.+ ++|+|.+-- -.. .......+..-.+.++.++
T Consensus 124 ~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr 202 (344)
T PRK05286 124 ADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALK 202 (344)
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHH
Confidence 34444444432 578888886321 123455555555543 499997731 111 1101111112236677788
Q ss_pred hhCC-----CcEE--EccCCC--CHHHHHHHHHhcCcceeeeehHH
Q 013813 283 NALR-----IPVL--ANGNVR--HMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 283 ~~~~-----iPVi--anGGI~--s~eda~~~l~~tGaDgVmIGRga 319 (436)
+.++ +||+ .+-++. ...++.+.+++.|+|+|.+--..
T Consensus 203 ~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 203 EAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 7776 8876 344444 24455555666799998875443
No 451
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=91.46 E-value=0.75 Score=44.14 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=56.6
Q ss_pred HHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCC
Q 013813 246 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 323 (436)
Q Consensus 246 k~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP 323 (436)
+++.+.|+..|-|..|.-.. + ..|+....++.+.+ ++-+++-.||+|++|+...-++ |+.+|.+|..++..-
T Consensus 200 ~raleiGakvvGvNNRnL~s---F--eVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~-GV~avLVGEslmk~s 273 (289)
T KOG4201|consen 200 QRALEIGAKVVGVNNRNLHS---F--EVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKA-GVKAVLVGESLMKQS 273 (289)
T ss_pred HHHHHhCcEEEeecCCccce---e--eechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHc-CceEEEecHHHHhcc
Confidence 44445699888888886542 2 57777777877765 5667888899999999998876 999999999998644
Q ss_pred c
Q 013813 324 A 324 (436)
Q Consensus 324 ~ 324 (436)
+
T Consensus 274 D 274 (289)
T KOG4201|consen 274 D 274 (289)
T ss_pred C
Confidence 3
No 452
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=91.45 E-value=3.7 Score=43.25 Aligned_cols=140 Identities=16% Similarity=0.252 Sum_probs=94.9
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCcEEEE--ecC----CCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NLG----CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v-~~g~D~IdL--N~G----CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
-.++||+..+. |-+|+++++.+..+ ..|.|.|-= |+. ||. .++.+.+.+.++...+.
T Consensus 140 v~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~~~~~a~~~a~~e 207 (406)
T cd08207 140 VEDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPL------------DERVRAVMRVINDHAQR 207 (406)
T ss_pred CCCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcH------------HHHHHHHHHHHHHHHHh
Confidence 46899998875 56799999999655 446776521 232 333 23344555555555556
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE----Ecc------
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL----ANG------ 293 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi----anG------ 293 (436)
++.....=..+..+.++..+-++.+.+.|+..+-|..-+ .-|..+..+++..++||. +.|
T Consensus 208 TG~~~~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p 277 (406)
T cd08207 208 TGRKVMYAFNITDDIDEMRRNHDLVVEAGGTCVMVSLNS----------VGLSGLAALRRHSQLPIHGHRNGWGMLTRSP 277 (406)
T ss_pred hCCcceEEEecCCCHHHHHHHHHHHHHhCCCeEEEeccc----------cchHHHHHHHhcCCceEEECCCcceecccCC
Confidence 666555444555557888888899999999988665332 225667888888888887 444
Q ss_pred --CCCCHHHHHHHHHhcCcceeeeeh
Q 013813 294 --NVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 294 --GI~s~eda~~~l~~tGaDgVmIGR 317 (436)
||.. .-..++.+..|+|.+.++.
T Consensus 278 ~~Gis~-~vl~kl~RLaGaD~~~~~~ 302 (406)
T cd08207 278 ALGISF-QAYQKLWRLAGVDHLHVNG 302 (406)
T ss_pred CCCCcH-HHHHHHHHHcCCCccccCC
Confidence 4554 3467778888999998875
No 453
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=91.43 E-value=2.3 Score=41.87 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=94.0
Q ss_pred HHHHHhCCCcEEEccCCCCCcHHHHHHHHHhCCCeEE-eC---cccc---hhhccChhhh---hhhhhccCCCCCEEEE-
Q 013813 95 AHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAY-TP---MLHS---RIFTESEKYR---NEEFATCKEDRPLFVQ- 163 (436)
Q Consensus 95 ~~~~~lg~~~i~lAPM~gvtd~~fR~l~~~~Ga~l~~-Te---misa---~~l~~~~~~~---~~~~~~~~~e~plivQ- 163 (436)
.-|+.-++ |+. |...=|.+|-+++.+.|.+++. .- |+.- ..+.-..... ...+.... .+.++|-
T Consensus 8 ~~~k~~~~-ki~---~lTAYD~~~A~~~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga-~~~~vv~D 82 (268)
T COG0413 8 IKMKQEGE-KIV---MLTAYDYPFAKLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGA-PNAFVVAD 82 (268)
T ss_pred HHHHhcCC-ceE---EEeccccHHHhhhhhcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcC-CCeeEEeC
Confidence 34555544 333 6777899999999999998644 22 2211 0000000000 01111111 1222221
Q ss_pred e----cCCCHHH-HHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc---
Q 013813 164 F----CANDPEI-LLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--- 234 (436)
Q Consensus 164 L----~g~d~e~-~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--- 234 (436)
+ ...++++ +..|+++++ .|+|+|-|-- | +.+.+.++.+.+. ++||.-=+-+
T Consensus 83 mPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEG------------G-------~~~~~~i~~L~~~-gIPV~gHiGLtPQ 142 (268)
T COG0413 83 LPFGSYEVSPEQALKNAARLMKEAGADAVKLEG------------G-------EEMAETIKRLTER-GIPVMGHIGLTPQ 142 (268)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcC------------C-------HHHHHHHHHHHHc-CCceEEEecCChh
Confidence 1 2234444 455557777 5899998872 2 4566677776544 7888776544
Q ss_pred -----------CCChh---hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEcc
Q 013813 235 -----------FPNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 293 (436)
Q Consensus 235 -----------g~~~~---d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianG 293 (436)
|.+.+ ..++-++.++++|+-.|.+-+.. -++.++|-+.++||+|+.|
T Consensus 143 ~v~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf~ivlE~Vp------------~~lA~~IT~~lsiPtIGIG 203 (268)
T COG0413 143 SVNWLGGYKVQGRTEESAEKLLEDAKALEEAGAFALVLECVP------------AELAKEITEKLSIPTIGIG 203 (268)
T ss_pred hhhccCCeeeecCCHHHHHHHHHHHHHHHhcCceEEEEeccH------------HHHHHHHHhcCCCCEEeec
Confidence 12222 34566888999999999886442 2556888899999999888
No 454
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.40 E-value=0.63 Score=49.96 Aligned_cols=69 Identities=26% Similarity=0.344 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccCCCCHHHHHHHHHhcCcceeeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGGI~s~eda~~~l~~tGaDgVmIG 316 (436)
+..+.++.+.++|++.|.|-.-... +..-++.|++||+.. +++| ..|+|.|.+.++.+++. |||+|-+|
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v-~agnv~t~~~a~~l~~a-Gad~v~vg 296 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPI-VAGNVVTAEGTRDLVEA-GADIVKVG 296 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeE-EeeccCCHHHHHHHHHc-CCCEEEEC
Confidence 4567888899999999987432221 133478899999875 5554 46899999999999986 99997755
No 455
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=91.36 E-value=3.9 Score=41.78 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE-Eec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-KIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV-KiR 233 (436)
.+.|+++ +-..|.. .|++++ .|+|.|=+- ....++.-| |-+-+-=..+.+...+++|++....|++| -+-
T Consensus 33 ~g~kivm-lTAyD~~----sA~i~d~aGvD~ILVG--DSlgmv~lG-~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmP 104 (332)
T PLN02424 33 RGEPITM-VTAYDYP----SAVHVDSAGIDVCLVG--DSAAMVVHG-HDTTLPITLDEMLVHCRAVARGANRPLLVGDLP 104 (332)
T ss_pred CCCcEEE-EecCCHH----HHHHHHHcCCCEEEEC--CcHHHHhcC-CCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCC
Confidence 3345443 4455532 234454 488886553 333333333 44444456677888888999999999988 766
Q ss_pred cC---CChhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE
Q 013813 234 VF---PNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 290 (436)
Q Consensus 234 lg---~~~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi 290 (436)
.+ .+.+++++.|..+ .++|+++|-+-|.... ..+.|+.+. ..+|||+
T Consensus 105 fgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~---------~~~~I~~l~-~~GIPV~ 155 (332)
T PLN02424 105 FGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPS---------RVTAAKAIV-EAGIAVM 155 (332)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHH---------HHHHHHHHH-HcCCCEE
Confidence 55 3567777777777 6799999988766311 135566666 4589999
No 456
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=91.35 E-value=16 Score=36.16 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=105.7
Q ss_pred EEccCC---CCCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhhh----hhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 106 IVAPMV---DNSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRNE----EFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 106 ~lAPM~---gvtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~~----~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
++.|+- .+-...+|+++..+ |++-++.--.+.....-+...+.. ..+......|+++++.+++.++..+-
T Consensus 6 ~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~ 85 (285)
T TIGR00674 6 LITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISL 85 (285)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHH
Confidence 445553 24446777777654 776555321111111111112211 12233456899999999999988888
Q ss_pred HHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec---cCCChhhHHHHHHHHHHc
Q 013813 176 ARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR---VFPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 176 A~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR---lg~~~~d~~~~ak~le~a 251 (436)
|+.+++ |+|+|-+-. |. |. ....+.+.+-.+.|.+++++||.+=-- .|.+.. .++.+.+.+.
T Consensus 86 a~~a~~~Gad~v~v~p--P~-------y~---~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~--~~~l~~L~~~ 151 (285)
T TIGR00674 86 TKFAEDVGADGFLVVT--PY-------YN---KPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLY--PETVKRLAEE 151 (285)
T ss_pred HHHHHHcCCCEEEEcC--Cc-------CC---CCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCC--HHHHHHHHcC
Confidence 887765 999998853 33 21 124577778888888888899886632 232211 3344444443
Q ss_pred CccEEEeccCcccccCCCCCccCHHHHHHHHhhCC--CcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 252 G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~--iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
+ . |.|-. + . ..|+..+.++.+..+ +.|+...+ ......+.. |++|.+.|-+.+ -|.++.++
T Consensus 152 ~-~---v~giK-~---s---~~d~~~~~~l~~~~~~~~~v~~G~d----~~~~~~~~~-G~~G~i~~~~~~-~P~~~~~l 214 (285)
T TIGR00674 152 P-N---IVAIK-E---A---TGNLERISEIKAIAPDDFVVLSGDD----ALTLPMMAL-GGKGVISVTANV-APKLMKEM 214 (285)
T ss_pred C-C---EEEEE-e---C---CCCHHHHHHHHHhcCCCeEEEECch----HHHHHHHHc-CCCEEEehHHHh-hHHHHHHH
Confidence 3 1 22221 1 1 235566666665543 43333222 233455554 999999876653 24455444
No 457
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.35 E-value=2.2 Score=42.75 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=59.3
Q ss_pred HHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccc--cCC--CCCccC----HHHHHHHHhhCCCc
Q 013813 218 EKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--KDG--KKFRAD----WNAIKAVKNALRIP 288 (436)
Q Consensus 218 ~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~--~~~--~~g~ad----~~~i~~ik~~~~iP 288 (436)
+.+++.. +.|+.+=+--..+.++..+.++.+++.|+|+|.+---.... ..+ .....+ .+.++.+++.+++|
T Consensus 91 ~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~P 170 (299)
T cd02940 91 RELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIP 170 (299)
T ss_pred HHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCC
Confidence 3344433 57887775333377888999999999999999873211110 000 000122 34456666677888
Q ss_pred EEEc--cCCCCHHHHHHHHHhcCcceeeee
Q 013813 289 VLAN--GNVRHMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 289 Vian--GGI~s~eda~~~l~~tGaDgVmIG 316 (436)
|+.= -++.+..++.+.+.+.|+|+|.+.
T Consensus 171 v~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 171 VIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred eEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 8743 344455566665666799999754
No 458
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=91.26 E-value=13 Score=38.64 Aligned_cols=199 Identities=19% Similarity=0.220 Sum_probs=112.9
Q ss_pred HHHHhC--CCcE---EEccCCCCCcHHHHHHHHHh---CCCeE-EeCcccchhhccChhhhh---hhhhccC----CCCC
Q 013813 96 HWTKLG--RPKL---IVAPMVDNSELPFRMLCRRY---GAEAA-YTPMLHSRIFTESEKYRN---EEFATCK----EDRP 159 (436)
Q Consensus 96 ~~~~lg--~~~i---~lAPM~gvtd~~fR~l~~~~---Ga~l~-~Temisa~~l~~~~~~~~---~~~~~~~----~e~p 159 (436)
.|+.+| .-|+ ++=|+ |.+-..|..+|.++ |.|++ --|.+....+...++... ...+... ...+
T Consensus 117 ~R~~lgv~~rPl~~tiiKP~-GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~ 195 (364)
T cd08210 117 LRALLGIPERPLLCSALKPQ-GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTL 195 (364)
T ss_pred HHHHhCCCCCceEEEEeccc-cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcce
Confidence 455555 2344 45697 99999999999877 66765 455555544433222111 1112222 3467
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccCC-
Q 013813 160 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP- 236 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg~- 236 (436)
.+++|.+. .+++.+-|+.++ .|++++-+|... +|-. .++.+++..+ +|+.. .|.+.
T Consensus 196 y~~Nita~-~~em~~ra~~a~~~Ga~~vMv~~~~---------~G~~----------~~~~l~~~~~~l~i~a-Hra~~g 254 (364)
T cd08210 196 YAPNVTGP-PTQLLERARFAKEAGAGGVLIAPGL---------TGLD----------TFRELAEDFDFLPILA-HPAFAG 254 (364)
T ss_pred EEEecCCC-HHHHHHHHHHHHHcCCCEEEeeccc---------chHH----------HHHHHHhcCCCcEEEE-cccccc
Confidence 88999886 667777776654 589999888531 2311 2333344444 45433 22221
Q ss_pred -------ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC---------CCcEEEccCCCCHHH
Q 013813 237 -------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---------RIPVLANGNVRHMED 300 (436)
Q Consensus 237 -------~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~---------~iPVianGGI~s~ed 300 (436)
.+.-..-+.+.+.-+|+|.+++..-. .+ . ...-+.+.++.+.+ ..|+ .+||+. +..
T Consensus 255 a~~~~~~~is~~~~~~kl~RlaGad~~~~~~~~--g~--~--~~~~e~~~~ia~~~~~~~~~iK~~~Pv-~sgG~~-~~~ 326 (364)
T cd08210 255 AFVSSGDGISHALLFGTLFRLAGADAVIFPNYG--GR--F--GFSREECQAIADACRRPMGGLKPILPA-PGGGMS-VER 326 (364)
T ss_pred ccccCCCcccHHHHHHHHHHHhCCCEEEeCCCc--CC--c--cCCHHHHHHHHHHhcCCccccCCCcCc-CCCCcC-HHH
Confidence 11112336777788999987653221 11 1 22234444454421 1233 355665 588
Q ss_pred HHHHHHhcCcce-eeeehHHhhCCc
Q 013813 301 VQKCLEETGCEG-VLSAESLLENPA 324 (436)
Q Consensus 301 a~~~l~~tGaDg-VmIGRgal~nP~ 324 (436)
+.++++..|-|. +++|-+++..|+
T Consensus 327 v~~l~~~~G~Dvil~aGGgi~gHp~ 351 (364)
T cd08210 327 APEMVELYGPDVMLLIGGSLLRAGD 351 (364)
T ss_pred HHHHHHHcCCcEEEEccccccCCCC
Confidence 889999889885 446777889888
No 459
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=91.24 E-value=16 Score=35.97 Aligned_cols=192 Identities=15% Similarity=0.126 Sum_probs=102.2
Q ss_pred EEccCC---CCCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhh----hhhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 106 IVAPMV---DNSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRN----EEFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 106 ~lAPM~---gvtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~----~~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
++.|+- .+-...+|.+++.+ |++.++.---+.....-+...+. ...+......|+++++.+.+.++..+-
T Consensus 8 ~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~ 87 (284)
T cd00950 8 LVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIEL 87 (284)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHH
Confidence 445554 24446667766644 77654422111111111111111 112233456799999999999888888
Q ss_pred HHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEec---cCCChhhHHHHHHHHHHc
Q 013813 176 ARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR---VFPNLQDTIKYAKMLEDA 251 (436)
Q Consensus 176 A~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiR---lg~~~~d~~~~ak~le~a 251 (436)
|+.+++ |+|+|-+-. |. | .....+.+.+-.+.|.+.+++||.+=-- .|.+. . .++.+.+.+.
T Consensus 88 a~~a~~~G~d~v~~~~--P~-------~---~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~l-s-~~~~~~L~~~ 153 (284)
T cd00950 88 TKRAEKAGADAALVVT--PY-------Y---NKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNI-E-PETVLRLAEH 153 (284)
T ss_pred HHHHHHcCCCEEEEcc--cc-------c---CCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCC-C-HHHHHHHhcC
Confidence 887755 899988863 22 1 1123566777888888888899987632 22221 1 2333333333
Q ss_pred C-ccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 252 G-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 252 G-~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
+ +.+|- . . ..|+..+.++.+.. ++.| ..|. + ..+...+.. |++|++.|.+.+ -|.++.+
T Consensus 154 p~v~giK------~---s---~~~~~~~~~~~~~~~~~~~v-~~G~--d-~~~~~~~~~-G~~G~~s~~~n~-~p~~~~~ 215 (284)
T cd00950 154 PNIVGIK------E---A---TGDLDRVSELIALCPDDFAV-LSGD--D-ALTLPFLAL-GGVGVISVAANV-APKLMAE 215 (284)
T ss_pred CCEEEEE------E---C---CCCHHHHHHHHHhCCCCeEE-EeCC--h-HhHHHHHHC-CCCEEEehHHHh-hHHHHHH
Confidence 1 22221 1 0 12445556665554 3433 3342 1 233445554 999999887753 2454444
Q ss_pred h
Q 013813 329 F 329 (436)
Q Consensus 329 i 329 (436)
+
T Consensus 216 ~ 216 (284)
T cd00950 216 M 216 (284)
T ss_pred H
Confidence 3
No 460
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.16 E-value=4 Score=40.11 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=77.4
Q ss_pred EEecCCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc--CC---
Q 013813 162 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--FP--- 236 (436)
Q Consensus 162 vQL~g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl--g~--- 236 (436)
+-+|..+.++... ..+.|+|-|||+-.-.. +.|--.+.++..+. +.+++||.|=||. |.
T Consensus 4 lEvcv~s~~~a~~---A~~~GAdRiELc~~L~~---------GGlTPS~g~i~~~~----~~~~ipv~vMIRPR~gdF~Y 67 (248)
T PRK11572 4 LEICCYSMECALT---AQQAGADRIELCAAPKE---------GGLTPSLGVLKSVR----ERVTIPVHPIIRPRGGDFCY 67 (248)
T ss_pred EEEEECCHHHHHH---HHHcCCCEEEEccCcCC---------CCcCCCHHHHHHHH----HhcCCCeEEEEecCCCCCCC
Confidence 4456666555443 34569999999743211 12333445555444 4557899888887 21
Q ss_pred Chhh---HHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-CCcEEEccC---CCCHHHHHHHHHhcC
Q 013813 237 NLQD---TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN---VRHMEDVQKCLEETG 309 (436)
Q Consensus 237 ~~~d---~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-~iPVianGG---I~s~eda~~~l~~tG 309 (436)
+.++ ..+-++.+.++|+|+|.+-.=+.+ +..|.+.++++.+.. ++|+...=- +.++..+.+.|...|
T Consensus 68 s~~E~~~M~~di~~~~~~GadGvV~G~L~~d------g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG 141 (248)
T PRK11572 68 SDGEFAAMLEDIATVRELGFPGLVTGVLDVD------GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLG 141 (248)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeECCC------CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcC
Confidence 2222 234467788999999987554433 247777777776654 466654332 334555555444457
Q ss_pred cceee
Q 013813 310 CEGVL 314 (436)
Q Consensus 310 aDgVm 314 (436)
++.|.
T Consensus 142 ~~rIL 146 (248)
T PRK11572 142 VARIL 146 (248)
T ss_pred CCEEE
Confidence 77765
No 461
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=91.11 E-value=0.98 Score=41.84 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 242 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 242 ~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
..-.+.++..++|+|-|-+... =..++++.+.+++|||+.|=|.+-|++.++++. ||-+|.-
T Consensus 111 ~~~~~~i~~~~pD~iEvLPGv~-----------Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~a-GA~avST 172 (181)
T COG1954 111 EKGIKQIEKSEPDFIEVLPGVM-----------PKVIKEITEKTHIPIIAGGLIETEEEVREALKA-GAVAVST 172 (181)
T ss_pred HHHHHHHHHcCCCEEEEcCccc-----------HHHHHHHHHhcCCCEEeccccccHHHHHHHHHh-CcEEEee
Confidence 3445566788999998865421 267899999999999999999999999999996 8888763
No 462
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.08 E-value=5.6 Score=37.19 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHH-HHHHH
Q 013813 172 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA-KMLED 250 (436)
Q Consensus 172 ~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~a-k~le~ 250 (436)
-.+|.+.++.|+|.||+- |-..| +|..+...+-+-++++... +.+|+.-+---+....+..+| --+.-
T Consensus 10 ~eEA~eAieGGAdIiDVK------NP~EG----SLGANFPWvIr~i~Ev~p~-d~~vSAT~GDvpYKPGT~slAalGaav 78 (235)
T COG1891 10 REEAIEAIEGGADIIDVK------NPAEG----SLGANFPWVIREIREVVPE-DQEVSATVGDVPYKPGTASLAALGAAV 78 (235)
T ss_pred HHHHHHHhhCCCceEecc------CcccC----cccCCChHHHHHHHHhCcc-ceeeeeeecCCCCCCchHHHHHHHhHh
Confidence 456677778899999984 22233 3444445544434443322 356666532211112223332 23456
Q ss_pred cCccEEEeccC-cccccCCCCCccCHHHHHHHHhhC-----CCcEEEcc-------CCCCHHHHHHHHHhcCcceeeeeh
Q 013813 251 AGCSLLAVHGR-TRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANG-------NVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 251 aG~d~I~VHgR-t~~~~~~~~g~ad~~~i~~ik~~~-----~iPVianG-------GI~s~eda~~~l~~tGaDgVmIGR 317 (436)
+|+|+|-|--. ++. + .-.++..+.+.+++ +..|++.| |--++-++-+...+.|||.+|+-+
T Consensus 79 ~GaDYiKVGLYg~kn----~--~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvDT 152 (235)
T COG1891 79 AGADYIKVGLYGTKN----E--EEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVDT 152 (235)
T ss_pred hCCceEEEeeccccc----H--HHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEec
Confidence 89999977321 111 0 11244444444333 46677777 222333444555667999999999
Q ss_pred HHhhCCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCC
Q 013813 318 SLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV 365 (436)
Q Consensus 318 gal~nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~ 365 (436)
+.=..-.+|.-.+ .+.+.+|.+.+.+|+.
T Consensus 153 aiKDGkslFdfm~-------------------~e~l~eFvd~Ah~hGL 181 (235)
T COG1891 153 AIKDGKSLFDFMD-------------------EEELEEFVDLAHEHGL 181 (235)
T ss_pred ccccchhHHhhhc-------------------HHHHHHHHHHHHHcch
Confidence 8877666775322 2357778887777764
No 463
>TIGR03586 PseI pseudaminic acid synthase.
Probab=91.06 E-value=3.3 Score=42.32 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=60.0
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCc-cEEEeccCcccccCCCCCccCHHHHHHH
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKAV 281 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~-d~I~VHgRt~~~~~~~~g~ad~~~i~~i 281 (436)
||.-+++..+++.+-+ .++||.+|.-. .+.++....+..+.+.|. +.+.+|+-+.-+. .....|+..|..+
T Consensus 117 ~S~~~~n~~LL~~va~-----~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~--~~~~~nL~~i~~l 188 (327)
T TIGR03586 117 ASFEITDLPLIRYVAK-----TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKCTSSYPA--PLEDANLRTIPDL 188 (327)
T ss_pred CCccccCHHHHHHHHh-----cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEecCCCCCC--CcccCCHHHHHHH
Confidence 5556788888776643 48999999555 467788888888889998 5566786332221 1225789999999
Q ss_pred HhhCCCcEEEcc
Q 013813 282 KNALRIPVLANG 293 (436)
Q Consensus 282 k~~~~iPVianG 293 (436)
++..++||..++
T Consensus 189 k~~f~~pVG~SD 200 (327)
T TIGR03586 189 AERFNVPVGLSD 200 (327)
T ss_pred HHHhCCCEEeeC
Confidence 998899997765
No 464
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=91.05 E-value=5.7 Score=41.93 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=94.1
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHHc-CCCcEEEE--ecC----CCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRVE-PYCDYVDI--NLG----CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v~-~g~D~IdL--N~G----CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
-.++|++..+. |-+|+++++.+..+. .|.|.|-= |+. ||. .++...+.+.++...+.
T Consensus 141 v~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~~~~~a~~~a~~e 208 (412)
T TIGR03326 141 IKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRF------------EERVEKLYKVRDKVEAE 208 (412)
T ss_pred CCCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCCccH------------HHHHHHHHHHHHHHHHH
Confidence 46799998875 668999999996554 46777632 222 343 23344555555555566
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh---hCCCcEEE---------
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLA--------- 291 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~---~~~iPVia--------- 291 (436)
++.....=..+..+.++..+-++.+.+.|+..+-|..-+. -|..+..+++ ..++||.+
T Consensus 209 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~ 278 (412)
T TIGR03326 209 TGERKEYLANITAPVREMERRAELVADLGGQYVMVDVVVC----------GWSALQYIRELTEDLGLAIHAHRAMHAAFT 278 (412)
T ss_pred hCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEEEEeecc----------chHHHHHHHHhhccCCeEEEEcCCcccccc
Confidence 6665554444555568888888999999999887654332 2455666665 45788876
Q ss_pred ---ccCCCCHHHHHHHHHhcCcceeeeehH
Q 013813 292 ---NGNVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 292 ---nGGI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
+-||.. .-..++.+..|+|.+.++..
T Consensus 279 ~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 279 RNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred cCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 336665 44677788889999998854
No 465
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=90.90 E-value=1.4 Score=44.23 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHcCccEEEeccCcccccCCC--CCccCHHHHHHHHhhC-CCcEEEccCCCCHH-HHHHHHHhcCcceeee
Q 013813 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFRADWNAIKAVKNAL-RIPVLANGNVRHME-DVQKCLEETGCEGVLS 315 (436)
Q Consensus 240 d~~~~ak~le~aG~d~I~VHgRt~~~~~~~--~g~ad~~~i~~ik~~~-~iPVianGGI~s~e-da~~~l~~tGaDgVmI 315 (436)
++.+..+.+++.|+|.|.|.-.|..+.+.. ....|++.+++|++.+ ++|++.-||=..++ +++++++. |+.-|=|
T Consensus 156 dP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~-Gi~KiNi 234 (287)
T PF01116_consen 156 DPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKN-GISKINI 234 (287)
T ss_dssp SHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHT-TEEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHc-CceEEEE
Confidence 445555666799999998744444433333 3357899999999999 99999999866555 77888875 8888888
Q ss_pred ehHHh
Q 013813 316 AESLL 320 (436)
Q Consensus 316 GRgal 320 (436)
++.+.
T Consensus 235 ~T~~~ 239 (287)
T PF01116_consen 235 GTELR 239 (287)
T ss_dssp SHHHH
T ss_pred ehHHH
Confidence 87653
No 466
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.73 E-value=2.7 Score=42.80 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHhcc-cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCC
Q 013813 209 NLPLVKSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 287 (436)
Q Consensus 209 ~p~~v~eIv~av~~~-~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~i 287 (436)
.++.+++.++.+++. .+.|+.|.+-.........+..+.+.+.++..+++++.. + +. +.++++ .++
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~---------P--~~-~~~lk~-~Gi 104 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGR---------P--DQ-ARALEA-IGI 104 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCC---------h--HH-HHHHHH-CCC
Confidence 588999999999885 689999997432222223345667778999999887532 1 12 456664 477
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
.|+ .-|.|...++++.+. |||+|+
T Consensus 105 ~v~--~~v~s~~~A~~a~~~-GaD~vV 128 (320)
T cd04743 105 STY--LHVPSPGLLKQFLEN-GARKFI 128 (320)
T ss_pred EEE--EEeCCHHHHHHHHHc-CCCEEE
Confidence 777 567899999988876 999986
No 467
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=90.64 E-value=2 Score=42.27 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=47.0
Q ss_pred CHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccc---cCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHH
Q 013813 168 DPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFL---MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~L---l~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~ 243 (436)
+.+...+-| +.+++|+|.||||+-...+ |+.. ....+.+..+|+.+++.+++||++-..- .+
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p-------~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~-------~~ 87 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRP-------GADPVSVEEELERVIPVLEALRGELDVLISVDTFR-------AE 87 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCC-------HH
Confidence 444444444 6678899999999633222 2211 2234566678888888888999888321 23
Q ss_pred HHHHHHHcCccEE
Q 013813 244 YAKMLEDAGCSLL 256 (436)
Q Consensus 244 ~ak~le~aG~d~I 256 (436)
.++.+.++|++.|
T Consensus 88 v~e~al~~G~~iI 100 (257)
T cd00739 88 VARAALEAGADII 100 (257)
T ss_pred HHHHHHHhCCCEE
Confidence 4555556688876
No 468
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=90.56 E-value=8.3 Score=37.47 Aligned_cols=134 Identities=11% Similarity=0.134 Sum_probs=87.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC-CCcEEEEec--C--CCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEE
Q 013813 157 DRPLFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 231 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v~~-g~D~IdLN~--G--CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVK 231 (436)
..++..+|...|...+.+-.+.++. |+|.+-+-. | +|+- .+| | .+++++++ +.|+.|=
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi-----tfG------p----~~i~~i~~--~~~~DvH 74 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF-----TVG------A----IAIKQFPT--HCFKDVH 74 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc-----ccC------H----HHHHHhCC--CCCEEEE
Confidence 4678899999999999999987765 788765553 2 3431 122 3 34455543 4565554
Q ss_pred eccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC---CCcEEEccCCCCHHHHHHHHHhc
Q 013813 232 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEET 308 (436)
Q Consensus 232 iRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~---~iPVianGGI~s~eda~~~l~~t 308 (436)
+= ..++.++++.+.++|+|.|++|.-... .. .+.+..+++.- ..=|..|=+ +..++++.++..
T Consensus 75 LM----v~~P~~~i~~~~~aGad~It~H~Ea~~-------~~-~~~l~~Ik~~g~~~kaGlalnP~-Tp~~~i~~~l~~- 140 (228)
T PRK08091 75 LM----VRDQFEVAKACVAAGADIVTLQVEQTH-------DL-ALTIEWLAKQKTTVLIGLCLCPE-TPISLLEPYLDQ- 140 (228)
T ss_pred ec----cCCHHHHHHHHHHhCCCEEEEcccCcc-------cH-HHHHHHHHHCCCCceEEEEECCC-CCHHHHHHHHhh-
Confidence 21 245677889999999999999965321 11 25677777752 333444444 678889888885
Q ss_pred CcceeeeehHHhhCCcc
Q 013813 309 GCEGVLSAESLLENPAL 325 (436)
Q Consensus 309 GaDgVmIGRgal~nP~l 325 (436)
+|.|++=+ -||..
T Consensus 141 -vD~VLiMt---V~PGf 153 (228)
T PRK08091 141 -IDLIQILT---LDPRT 153 (228)
T ss_pred -cCEEEEEE---ECCCC
Confidence 89877654 35653
No 469
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=90.55 E-value=4.3 Score=39.64 Aligned_cols=109 Identities=15% Similarity=0.214 Sum_probs=73.4
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHH
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik 282 (436)
|=.+..+.+.+..+++.+++. ++.||+-| .++.+ -++...+.|+|.|-+|-......... .....+.+++
T Consensus 105 Gldv~~~~~~l~~~i~~L~~~-gIrVSLFi--dP~~~----qi~~A~~~GAd~VELhTG~yA~a~~~---~~~~el~~~~ 174 (239)
T PRK05265 105 GLDVAGQFDKLKPAIARLKDA-GIRVSLFI--DPDPE----QIEAAAEVGADRIELHTGPYADAKTE---AEAAELERIA 174 (239)
T ss_pred cchhhcCHHHHHHHHHHHHHC-CCEEEEEe--CCCHH----HHHHHHHhCcCEEEEechhhhcCCCc---chHHHHHHHH
Confidence 667778889999999999654 78888875 33322 34556789999999985543322111 1122233333
Q ss_pred ------hhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 283 ------NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 283 ------~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
...++-|-+..|++ ++.+..+....+..=|-||.+++.+
T Consensus 175 ~aa~~a~~lGL~VnAGHgLn-y~Nv~~i~~ip~i~EvnIGHsiia~ 219 (239)
T PRK05265 175 KAAKLAASLGLGVNAGHGLN-YHNVKPIAAIPGIEELNIGHAIIAR 219 (239)
T ss_pred HHHHHHHHcCCEEecCCCCC-HHhHHHHhhCCCCeEEccCHHHHHH
Confidence 34578888888885 6777776665688889999888764
No 470
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=90.45 E-value=2.8 Score=40.89 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=52.2
Q ss_pred HHHHc-CCCcEEEEecCCCchhhhcCccc-ccccCChHHHHHHHHHHhcccCccEEEEeccCCC--hhhHHHHHHHHHHc
Q 013813 176 ARRVE-PYCDYVDINLGCPQRIARRGNYG-AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDA 251 (436)
Q Consensus 176 A~~v~-~g~D~IdLN~GCP~~~~~~~~~G-s~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~--~~d~~~~ak~le~a 251 (436)
|++++ .||++|=+--.+=. ..-|+- ..+ -..+.+.+.++.|...+++||+|-+..|.. ..+..+.++.++++
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a---~s~G~pD~~~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~a 97 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVA---ASLGYPDGGL-LTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERA 97 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHH---HHTTS-SSS--S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEechHHHH---HHcCCCCCCC-CCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHc
Confidence 45554 48999777521100 000111 112 245666788888888899999999998753 66788889999999
Q ss_pred CccEEEeccC
Q 013813 252 GCSLLAVHGR 261 (436)
Q Consensus 252 G~d~I~VHgR 261 (436)
|+.+|+|-..
T Consensus 98 G~agi~IEDq 107 (238)
T PF13714_consen 98 GAAGINIEDQ 107 (238)
T ss_dssp T-SEEEEESB
T ss_pred CCcEEEeecc
Confidence 9999999654
No 471
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.45 E-value=1.5 Score=43.92 Aligned_cols=90 Identities=12% Similarity=0.202 Sum_probs=55.5
Q ss_pred HHHHHHHHhccc-CccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhh---CCC
Q 013813 213 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA---LRI 287 (436)
Q Consensus 213 v~eIv~av~~~~-~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~---~~i 287 (436)
+.+.++.+++.. ..+|.|-++ + .+-++.+.++|+|.|-+-.-+.+ +. +.+..+++. .++
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~---~----leea~~a~~agaDiI~LDn~~~e---------~l~~~v~~l~~~~~~~~~ 232 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVE---S----LEDALKAAKAGADIIMLDNMTPE---------EIREVIEALKREGLRERV 232 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeC---C----HHHHHHHHHcCcCEEEECCCCHH---------HHHHHHHHHHhcCcCCCE
Confidence 344555555443 244555432 2 33345566899998877544322 11 222333331 367
Q ss_pred cEEEccCCCCHHHHHHHHHhcCcceeeeehHHh
Q 013813 288 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 320 (436)
Q Consensus 288 PVianGGI~s~eda~~~l~~tGaDgVmIGRgal 320 (436)
.+.++||| +.+.+.++.+ +|+|.+.+|.-..
T Consensus 233 ~leaSGGI-~~~ni~~yA~-tGvD~Is~galt~ 263 (278)
T PRK08385 233 KIEVSGGI-TPENIEEYAK-LDVDVISLGALTH 263 (278)
T ss_pred EEEEECCC-CHHHHHHHHH-cCCCEEEeChhhc
Confidence 89999999 7899999887 6999999996444
No 472
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=90.31 E-value=1.1 Score=45.19 Aligned_cols=88 Identities=22% Similarity=0.340 Sum_probs=59.8
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHH---HHhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~---l~~tGa 310 (436)
.|.+...++++.+.+.|+++|.+-|-|.+... .+..-..+.++.+++.+ ++|||+.-|=.+.+++.++ .+..|+
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~-Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPT-LTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchh-cCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 45667788999999999999999888876321 11111234456666665 5888864444444444433 344699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|++|+-...|..|.
T Consensus 101 d~il~v~PyY~k~~ 114 (299)
T COG0329 101 DGILVVPPYYNKPS 114 (299)
T ss_pred CEEEEeCCCCcCCC
Confidence 99999998888887
No 473
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=90.21 E-value=5.7 Score=41.64 Aligned_cols=142 Identities=15% Similarity=0.227 Sum_probs=94.2
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHHc-CCCcEEEE--ecC----CCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRVE-PYCDYVDI--NLG----CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v~-~g~D~IdL--N~G----CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
-.++||+..+. |-+|+++++.+..+. .|.|.|-= |+. ||. .++...+.+.++...+.
T Consensus 121 v~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~a~~~a~~~a~~e 188 (391)
T cd08209 121 VHDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPA------------LERIRACRPVLQEVYEQ 188 (391)
T ss_pred CCCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCH------------HHHHHHHHHHHHHHHHh
Confidence 46899999886 567999999996554 46776522 222 443 23444555566666666
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh--hCCCcEEE----cc----
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLA----NG---- 293 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~--~~~iPVia----nG---- 293 (436)
++.....=..+..+.++..+-++.+.+.|+..+-|..-+ .-|..+..+++ ..++||.+ .|
T Consensus 189 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~ 258 (391)
T cd08209 189 TGRRTLYAVNLTGPVFTLKEKARRLVEAGANALLFNVFA----------YGLDVLEALASDPEINVPIFAHPAFAGALYG 258 (391)
T ss_pred hCCcceEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeccc----------cchHHHHHHHhcCcCCcEEEecCCccccccc
Confidence 776655555565566888888999999999988765332 22456777776 45777762 33
Q ss_pred ----CCCCHHHHHHHHHhcCcceeeeehH
Q 013813 294 ----NVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 294 ----GI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
||...--..++++..|+|.+.++..
T Consensus 259 ~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 259 SPDYGIAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred CCCCCCcHHHHHHHHHHHcCCCccccCCc
Confidence 5544445677778889999987754
No 474
>PRK15452 putative protease; Provisional
Probab=90.19 E-value=10 Score=40.39 Aligned_cols=129 Identities=15% Similarity=0.081 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCC---hhhHH
Q 013813 166 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN---LQDTI 242 (436)
Q Consensus 166 g~d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~---~~d~~ 242 (436)
..+.+.+.. .++.|+|.|=+-...-....+...+ ..+.+.+.++.+++ .++.|.+.+..-.. .+...
T Consensus 10 ag~~e~l~a---Ai~~GADaVY~G~~~~~~R~~~~~f------~~edl~eav~~ah~-~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 10 AGTLKNMRY---AFAYGADAVYAGQPRYSLRVRNNEF------NHENLALGINEAHA-LGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred CCCHHHHHH---HHHCCCCEEEECCCccchhhhccCC------CHHHHHHHHHHHHH-cCCEEEEEecCcCCHHHHHHHH
Confidence 344554443 3567999998854322211111111 23556666666544 46777777655433 33455
Q ss_pred HHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhh-CCCcEEEcc--CCCCHHHHHHHHHhcCcceeeeehHH
Q 013813 243 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 243 ~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~-~~iPVianG--GI~s~eda~~~l~~tGaDgVmIGRga 319 (436)
++.+.+.+.|+|+|+|. |+..+..+++. .++||.+.- .|.+...+..+.+ .|++.|.+.|-+
T Consensus 80 ~~l~~l~~~gvDgvIV~--------------d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~-lG~~rvvLSrEL 144 (443)
T PRK15452 80 RDLEPVIAMKPDALIMS--------------DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQ-MGLTRVILSREL 144 (443)
T ss_pred HHHHHHHhCCCCEEEEc--------------CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHH-CCCcEEEECCcC
Confidence 66777789999999884 34556666664 366776544 4666666655554 477777777654
No 475
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=90.11 E-value=5.8 Score=41.89 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=93.9
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCcEEEE--ec----CCCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NL----GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v-~~g~D~IdL--N~----GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
-.++|++.-+. |-+|+++++.+..+ ..|.|.|-= |+ -||. .++...+.+.++...+.
T Consensus 128 v~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~------------~~Rv~~~~~a~~~a~~e 195 (412)
T cd08213 128 IKDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRF------------EERAKESLKARDKAEAE 195 (412)
T ss_pred CCCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCH------------HHHHHHHHHHHHHHHHh
Confidence 46899998875 56799999999655 456676521 23 2443 23445566666666666
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh---hCCCcEEE----cc---
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLA----NG--- 293 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~---~~~iPVia----nG--- 293 (436)
++.....=..+..+.++..+-++.+.+.|+..+-|..-+. -|..+..+++ ..++||.+ .|
T Consensus 196 TG~~~~y~~NiT~~~~em~~ra~~a~e~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ihaHra~~ga~~ 265 (412)
T cd08213 196 TGERKAYLANITAPVREMERRAELVADLGGKYVMIDVVVA----------GWSALQYLRDLAEDYGLAIHAHRAMHAAFT 265 (412)
T ss_pred hCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEEeecccc----------ChHHHHHHHHhccccCeEEEECCCcceecc
Confidence 7766555555555578888889999999998876643332 2455666665 45678776 22
Q ss_pred -----CCCCHHHHHHHHHhcCcceeeeehH
Q 013813 294 -----NVRHMEDVQKCLEETGCEGVLSAES 318 (436)
Q Consensus 294 -----GI~s~eda~~~l~~tGaDgVmIGRg 318 (436)
||.. .-..++++..|+|.+.++..
T Consensus 266 r~~~~Gis~-~~l~kl~RLaGaD~ih~~t~ 294 (412)
T cd08213 266 RNPRHGISM-LVLAKLYRLIGVDQLHIGTA 294 (412)
T ss_pred cCCcCcCcH-HHHHHHHHHcCCCccccCCc
Confidence 6654 46677788889999988754
No 476
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=90.04 E-value=5.7 Score=38.64 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=74.1
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHH
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik 282 (436)
|=.+..+.+.+.++++.+++. ++.||+-|- ++. +-++...+.|++.|-+|-......... ......+.+++
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiD--Pd~----~qi~~A~~~GAd~VELhTG~Ya~a~~~--~~~~~el~~i~ 172 (234)
T cd00003 102 GLDVAGQAEKLKPIIERLKDA-GIRVSLFID--PDP----EQIEAAKEVGADRVELHTGPYANAYDK--AEREAELERIA 172 (234)
T ss_pred cchhhcCHHHHHHHHHHHHHC-CCEEEEEeC--CCH----HHHHHHHHhCcCEEEEechhhhcCCCc--hhHHHHHHHHH
Confidence 667788899999999999755 788888743 332 235566799999999985543322111 11011233332
Q ss_pred ------hhCCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 283 ------NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 283 ------~~~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
...++-|-+..|++ ++.+..+.+..+..=|-||.+++.+
T Consensus 173 ~aa~~a~~~GL~VnAGHgLn-y~Nv~~i~~ip~i~ElnIGHsiia~ 217 (234)
T cd00003 173 KAAKLARELGLGVNAGHGLN-YENVKPIAKIPGIAELNIGHAIISR 217 (234)
T ss_pred HHHHHHHHcCCEEecCCCCC-HHHHHHHHhCCCCeEEccCHHHHHH
Confidence 34577787777875 7888877777788899999888764
No 477
>PLN02417 dihydrodipicolinate synthase
Probab=89.92 E-value=1.3 Score=44.11 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=57.5
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCc
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 310 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGa 310 (436)
.|.+...++++.+.+.|+++|.+.|-+.+... .+..-..+.++.+.+.+ ++||++.=|=.+.+++.+.. +..|+
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~-ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Ga 97 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTTGEGQL-MSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGM 97 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcchhh-CCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCC
Confidence 35566778899999999999999888775321 11111223444445544 58887655544555555543 34699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+.-..+..|.
T Consensus 98 dav~~~~P~y~~~~ 111 (280)
T PLN02417 98 HAALHINPYYGKTS 111 (280)
T ss_pred CEEEEcCCccCCCC
Confidence 99999988777664
No 478
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.65 E-value=1.1 Score=43.99 Aligned_cols=90 Identities=7% Similarity=0.026 Sum_probs=68.1
Q ss_pred ChhhHHHHHHHHHHcCccEEE---eccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCccee
Q 013813 237 NLQDTIKYAKMLEDAGCSLLA---VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 313 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~---VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgV 313 (436)
+.+...+.|+.++++|+..+- .-.||......+.|.--+..+.++++..++|++. .|.+.+++..+.+ .+|.+
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~~e--~vdil 102 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS--EIMSERQLEEAYD--YLDVI 102 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHh--cCCEE
Confidence 456778889999999987762 2456654322222333466777888888999998 8999999998776 59999
Q ss_pred eeehHHhhCCccchhhh
Q 013813 314 LSAESLLENPALFAGFR 330 (436)
Q Consensus 314 mIGRgal~nP~lf~~i~ 330 (436)
.||...+.|..+...+.
T Consensus 103 qIgs~~~~n~~LL~~va 119 (250)
T PRK13397 103 QVGARNMQNFEFLKTLS 119 (250)
T ss_pred EECcccccCHHHHHHHH
Confidence 99999999999887664
No 479
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=89.52 E-value=3.2 Score=39.32 Aligned_cols=43 Identities=12% Similarity=0.317 Sum_probs=32.3
Q ss_pred HHHHHhh-CCCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhC
Q 013813 278 IKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322 (436)
Q Consensus 278 i~~ik~~-~~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~n 322 (436)
++.+++. .++-|-.-|||. ++.+.++.+. ||+.+..|++.+.-
T Consensus 160 V~~lR~kyp~l~ievDGGv~-~~ti~~~a~A-GAN~iVaGsavf~a 203 (224)
T KOG3111|consen 160 VEWLREKYPNLDIEVDGGVG-PSTIDKAAEA-GANMIVAGSAVFGA 203 (224)
T ss_pred HHHHHHhCCCceEEecCCcC-cchHHHHHHc-CCCEEEecceeecC
Confidence 4556644 455566999996 6888888886 99999999887543
No 480
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=89.51 E-value=24 Score=35.20 Aligned_cols=196 Identities=17% Similarity=0.130 Sum_probs=106.6
Q ss_pred EEEccCC---CCCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhhh----hhhccCCCCCEEEEecCCCHHHHHH
Q 013813 105 LIVAPMV---DNSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRNE----EFATCKEDRPLFVQFCANDPEILLN 174 (436)
Q Consensus 105 i~lAPM~---gvtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~~----~~~~~~~e~plivQL~g~d~e~~~~ 174 (436)
.++.|+- .+-...+|++++.+ |++.++.--.+.....-+...+.. ..+......|++++++. +.++..+
T Consensus 12 a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~ 90 (296)
T TIGR03249 12 FPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIE 90 (296)
T ss_pred eeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHH
Confidence 3455663 24557788887765 776554211111111111112211 12233456899999975 6777777
Q ss_pred HHHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHH-c-
Q 013813 175 AARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED-A- 251 (436)
Q Consensus 175 AA~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~-a- 251 (436)
.++.+++ |+|+|-+- .|. | ...+.+-+.+-.+.|.+++++||.+=-|.|.+.. .++...+.+ .
T Consensus 91 ~a~~a~~~Gadav~~~--pP~-------y---~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~--~~~~~~La~~~~ 156 (296)
T TIGR03249 91 IARLAEKAGADGYLLL--PPY-------L---INGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLN--ADTLERLADRCP 156 (296)
T ss_pred HHHHHHHhCCCEEEEC--CCC-------C---CCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCC--HHHHHHHHhhCC
Confidence 7877765 99999774 343 1 1123466777788888888999988766654322 233333432 3
Q ss_pred CccEEEeccCcccccCCCCCccCHHHHHHHHhhCC-CcEEEcc-CCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 252 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANG-NVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 252 G~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~-iPVianG-GI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
.+.+|- + . ..|+..+.++.+..+ --.+.+| +..+ ..+...+.. |++|++.|-+.+ .|.++.++
T Consensus 157 nvvgiK------d---s---~~d~~~~~~~~~~~~~~~~v~~G~~~~d-~~~~~~~~~-Ga~G~is~~~n~-~P~~~~~~ 221 (296)
T TIGR03249 157 NLVGFK------D---G---IGDMEQMIEITQRLGDRLGYLGGMPTAE-VTAPAYLPL-GVTSYSSAIFNF-IPHIARAF 221 (296)
T ss_pred CEEEEE------e---C---CCCHHHHHHHHHHcCCCeEEEeCCCcch-hhHHHHHhC-CCCEEEecHHHh-hHHHHHHH
Confidence 222221 1 1 235666666665542 1233444 2222 233444554 999999885544 46665554
Q ss_pred h
Q 013813 330 R 330 (436)
Q Consensus 330 ~ 330 (436)
-
T Consensus 222 ~ 222 (296)
T TIGR03249 222 Y 222 (296)
T ss_pred H
Confidence 3
No 481
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=89.46 E-value=1.4 Score=39.62 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHH----HHHhcCcceee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK----CLEETGCEGVL 314 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~----~l~~tGaDgVm 314 (436)
+...++++.+.+.|++.|.+........... ...++.+..+++..++|++++..+.+..+... .....|+|+|.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~ 89 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE 89 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence 5677889999999999998865544322211 12224567777778999999998887776542 44456999999
Q ss_pred eehHHh
Q 013813 315 SAESLL 320 (436)
Q Consensus 315 IGRgal 320 (436)
+.-...
T Consensus 90 l~~~~~ 95 (200)
T cd04722 90 IHGAVG 95 (200)
T ss_pred EeccCC
Confidence 986553
No 482
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=89.35 E-value=8.2 Score=40.71 Aligned_cols=141 Identities=17% Similarity=0.179 Sum_probs=92.6
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCcEEEE--ecC----CCchhhhcCcccccccCChHHHHHHHHHHhcc
Q 013813 155 KEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NLG----CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223 (436)
Q Consensus 155 ~~e~plivQL~----g~d~e~~~~AA~~v-~~g~D~IdL--N~G----CP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~ 223 (436)
-.++|++.-+. |-+|+++++++..+ ..|.|.|-= |+. ||. .++...+.+.++...+.
T Consensus 131 v~~RPL~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~~~~~a~~~a~~e 198 (407)
T PRK09549 131 VHDRPLLMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENALTPF------------EKRIVAGKEVLQEVYET 198 (407)
T ss_pred CCCCceEEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCH------------HHHHHHHHHHHHHHHHh
Confidence 46899998866 66899999999655 446776532 232 333 23445555666666666
Q ss_pred cCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHh--hCCCcEEE----cc----
Q 013813 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLA----NG---- 293 (436)
Q Consensus 224 ~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~--~~~iPVia----nG---- 293 (436)
++.....=..+..+.++..+-++.+.+.|+..+-+..-+. -|..+..+++ ..++||.+ .|
T Consensus 199 TG~~~~y~~NiT~~~~em~~ra~~a~~~G~~~~m~~~~~~----------G~~al~~l~~~~~~~lpIhaHra~~ga~~r 268 (407)
T PRK09549 199 TGHKTLYAVNLTGRTFELKEKAKRAAEAGADALLFNVFAY----------GLDVLQSLAEDPEIPVPIMAHPAVSGAYTP 268 (407)
T ss_pred hCCcceEEEecCCCHHHHHHHHHHHHHcCCCeEEEecccc----------chHHHHHHHhcCCCCcEEEecCCccccccc
Confidence 7766655555655567788888889999998886654322 2455666766 34677662 23
Q ss_pred ----CCCCHHHHHHHHHhcCcceeeeeh
Q 013813 294 ----NVRHMEDVQKCLEETGCEGVLSAE 317 (436)
Q Consensus 294 ----GI~s~eda~~~l~~tGaDgVmIGR 317 (436)
||...--.-++++..|+|.+.++.
T Consensus 269 ~~~~Gis~~~~l~kl~RLaGaD~~~~~~ 296 (407)
T PRK09549 269 SPLYGISSPLLLGKLLRYAGADFSLFPS 296 (407)
T ss_pred CCCCcCcHHHHHHHHHHHcCCCccccCC
Confidence 555444466777778999999875
No 483
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=89.32 E-value=6.2 Score=38.49 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=72.5
Q ss_pred cccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCC-ccCHHHHHH-
Q 013813 203 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKA- 280 (436)
Q Consensus 203 Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g-~ad~~~i~~- 280 (436)
|=.+..+.+.+.++++.+++. ++.||+-| .++. +-++...+.|+|.|-+|-........... ...++.+..
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~-gI~VSLFi--DP~~----~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~a 174 (237)
T TIGR00559 102 GLDVARLKDKLCELVKRFHAA-GIEVSLFI--DADK----DQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKA 174 (237)
T ss_pred CchhhhCHHHHHHHHHHHHHC-CCEEEEEe--CCCH----HHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHH
Confidence 666777889999999999654 78888774 3332 23556679999999998554332211100 111222222
Q ss_pred --HHhhCCCcEEEccCCCCHHHHHHHHHhcC-cceeeeehHHhhC
Q 013813 281 --VKNALRIPVLANGNVRHMEDVQKCLEETG-CEGVLSAESLLEN 322 (436)
Q Consensus 281 --ik~~~~iPVianGGI~s~eda~~~l~~tG-aDgVmIGRgal~n 322 (436)
.....++-|-+.-|++ ++.+..+.+..+ .+=|-||.+++.+
T Consensus 175 a~~A~~lGL~VnAGHgLn-y~Nv~~i~~~~~~i~EvnIGHsiia~ 218 (237)
T TIGR00559 175 SVHAHSLGLKVNAGHGLN-YHNVKYFAEILPYLDELNIGHAIIAD 218 (237)
T ss_pred HHHHHHcCCEEecCCCCC-HHhHHHHHhCCCCceEEecCHHHHHH
Confidence 2234578888877875 677777766655 8889999888764
No 484
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=89.32 E-value=5.2 Score=39.67 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=77.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHc-CCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEE-Eec
Q 013813 156 EDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-KIR 233 (436)
Q Consensus 156 ~e~plivQL~g~d~e~~~~AA~~v~-~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsV-KiR 233 (436)
.+.|+++ +...|.- .|++++ .|+|.|= .|....++.-| |-+-+--..+.+...+++|++....|+.| .+-
T Consensus 13 ~g~~i~m-~tayD~~----sA~i~~~aG~d~il--vGdSlgm~~lG-~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmP 84 (263)
T TIGR00222 13 QEEKIVA-ITAYDYS----FAKLFADAGVDVIL--VGDSLGMVVLG-HDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLP 84 (263)
T ss_pred CCCcEEE-EeccCHH----HHHHHHHcCCCEEE--ECccHhHHhcC-CCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 3445443 4444432 244554 5899887 44444443333 44444456677888888888874333322 222
Q ss_pred c-C-CChhhHHHHHHHH-HHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEE---------E--ccCC----
Q 013813 234 V-F-PNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL---------A--NGNV---- 295 (436)
Q Consensus 234 l-g-~~~~d~~~~ak~l-e~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVi---------a--nGGI---- 295 (436)
. + .+.++.++-+.++ +++|+++|.+-|.. ...+.++.+.+ .+|||+ + .||.
T Consensus 85 f~sy~~~e~a~~na~rl~~eaGa~aVkiEgg~----------~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qg 153 (263)
T TIGR00222 85 FMSYATPEQALKNAARVMQETGANAVKLEGGE----------WLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQG 153 (263)
T ss_pred cCCCCCHHHHHHHHHHHHHHhCCeEEEEcCcH----------hHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecC
Confidence 1 1 1356666656554 55999999987641 11233444433 478888 3 3655
Q ss_pred CCHHHHHHHH------HhcCcceeee
Q 013813 296 RHMEDVQKCL------EETGCEGVLS 315 (436)
Q Consensus 296 ~s~eda~~~l------~~tGaDgVmI 315 (436)
++.+.+.+++ ++.||+++.+
T Consensus 154 rt~~~a~~~i~~A~a~e~AGA~~ivl 179 (263)
T TIGR00222 154 KDEEAAKKLLEDALALEEAGAQLLVL 179 (263)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3445444443 2348998865
No 485
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=89.00 E-value=1.7 Score=43.43 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=59.7
Q ss_pred ChhhHHHHHHHHHH-cCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCc
Q 013813 237 NLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 310 (436)
Q Consensus 237 ~~~d~~~~ak~le~-aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGa 310 (436)
+.+....+++.+.+ .|++.|.+-|-+.+... .+..-..+.++.+.+.+ ++||++.=|-.+.+++.++. ++.||
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~-Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFL-LSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGY 100 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCcccccc-CCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 55667788999999 99999999887765321 11111234455555554 58988766656667765543 44699
Q ss_pred ceeeeehHHhhCCc
Q 013813 311 EGVLSAESLLENPA 324 (436)
Q Consensus 311 DgVmIGRgal~nP~ 324 (436)
|+||+--..+..|.
T Consensus 101 d~v~v~~P~y~~~~ 114 (293)
T PRK04147 101 DAISAVTPFYYPFS 114 (293)
T ss_pred CEEEEeCCcCCCCC
Confidence 99999988887764
No 486
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=88.98 E-value=1.5 Score=44.24 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC--CCcEEEccCCCCHHHHHHHH---HhcCcc
Q 013813 237 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 311 (436)
Q Consensus 237 ~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~--~iPVianGGI~s~eda~~~l---~~tGaD 311 (436)
|.+....+++.+.+.|+++|.+-|-|.+... .+..-..+.++.+++.+ ++|||+.-+=.+.+++.++. +..|+|
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~-Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECAT-LTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccchh-CCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 4566678889999999999999888776321 11111123444555544 58988666555556665544 345999
Q ss_pred eeeeehHHhhCCc
Q 013813 312 GVLSAESLLENPA 324 (436)
Q Consensus 312 gVmIGRgal~nP~ 324 (436)
+||+--..+..|.
T Consensus 106 ~vlv~~P~y~~~~ 118 (309)
T cd00952 106 GTMLGRPMWLPLD 118 (309)
T ss_pred EEEECCCcCCCCC
Confidence 9999988766663
No 487
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=88.97 E-value=5 Score=41.11 Aligned_cols=159 Identities=22% Similarity=0.269 Sum_probs=74.7
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEec-------CCCchhhhcCcccccccCCh----HHHHHHHHHHhc-cc
Q 013813 158 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINL-------GCPQRIARRGNYGAFLMDNL----PLVKSLVEKLAL-NL 224 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~-------GCP~~~~~~~~~Gs~Ll~~p----~~v~eIv~av~~-~~ 224 (436)
.|+++ -.|- +...++++.+ ..|+.+|++-- |-|.+...+.--..++++.. .-+...++.+++ ..
T Consensus 57 NPi~l-AsG~--~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~ 133 (335)
T TIGR01036 57 NPLGL-AAGF--DKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARY 133 (335)
T ss_pred CCcEe-CCcc--CCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccC
Confidence 57776 3343 3344455443 45899999863 22222111110012222221 123444444433 23
Q ss_pred CccEEEEeccC---CChhhHHHHHHHHHHcC--ccEEEe--ccCcc-cccCCCCCccCHHHHHHHHhhCC-------CcE
Q 013813 225 NVPVSCKIRVF---PNLQDTIKYAKMLEDAG--CSLLAV--HGRTR-DEKDGKKFRADWNAIKAVKNALR-------IPV 289 (436)
Q Consensus 225 ~iPVsVKiRlg---~~~~d~~~~ak~le~aG--~d~I~V--HgRt~-~~~~~~~g~ad~~~i~~ik~~~~-------iPV 289 (436)
+.||.|-+-.. .......++++.++.++ +|+|.+ +.-.. ..........-.+.++.+++.++ +||
T Consensus 134 ~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv 213 (335)
T TIGR01036 134 KGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPV 213 (335)
T ss_pred CCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCce
Confidence 45655554221 11122345555555555 999977 22211 11111000112344566666554 887
Q ss_pred E--EccCCC--CHHHHHHHHHhcCcceeeeehHH
Q 013813 290 L--ANGNVR--HMEDVQKCLEETGCEGVLSAESL 319 (436)
Q Consensus 290 i--anGGI~--s~eda~~~l~~tGaDgVmIGRga 319 (436)
+ ..-++. +..++.+.+...|+|||.+.--+
T Consensus 214 ~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 214 LVKIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 6 455554 35666665666799999875444
No 488
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=88.91 E-value=27 Score=35.01 Aligned_cols=195 Identities=17% Similarity=0.104 Sum_probs=105.1
Q ss_pred EEccCCC---CCcHHHHHHHHHh---CCCeEEeCcccchhhccChhhhhh----hhhccCCCCCEEEEecCCCHHHHHHH
Q 013813 106 IVAPMVD---NSELPFRMLCRRY---GAEAAYTPMLHSRIFTESEKYRNE----EFATCKEDRPLFVQFCANDPEILLNA 175 (436)
Q Consensus 106 ~lAPM~g---vtd~~fR~l~~~~---Ga~l~~Temisa~~l~~~~~~~~~----~~~~~~~e~plivQL~g~d~e~~~~A 175 (436)
++.|+-. +-...+|.+++.+ |++.++.--.+.....-+...+.. ..+......|+++++++ +.++..+.
T Consensus 15 ~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~ 93 (303)
T PRK03620 15 PVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEY 93 (303)
T ss_pred eeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHH
Confidence 4445532 3335677777655 776554222222211111112111 12233566899999975 77888888
Q ss_pred HHHHcC-CCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCCChhhHHHHHHHHH-HcC-
Q 013813 176 ARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE-DAG- 252 (436)
Q Consensus 176 A~~v~~-g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~~ak~le-~aG- 252 (436)
++.+++ |+|+|-+-. |. |- ....+.+.+-.+++.+.+++||.+=-+.+.+. ..+....+. +.+
T Consensus 94 ~~~a~~~Gadav~~~p--P~-------y~---~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l--~~~~l~~L~~~~pn 159 (303)
T PRK03620 94 AQAAERAGADGILLLP--PY-------LT---EAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVL--TADTLARLAERCPN 159 (303)
T ss_pred HHHHHHhCCCEEEECC--CC-------CC---CCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCC--CHHHHHHHHhhCCC
Confidence 887765 999997742 32 11 12357778888888888899999876554321 123333343 432
Q ss_pred ccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCc-EEEccCCCCHHH-HHHHHHhcCcceeeeehHHhhCCccchhhh
Q 013813 253 CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMED-VQKCLEETGCEGVLSAESLLENPALFAGFR 330 (436)
Q Consensus 253 ~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iP-VianGGI~s~ed-a~~~l~~tGaDgVmIGRgal~nP~lf~~i~ 330 (436)
+.+|- + . ..|+..+.++.+..+-. .+.+|. .+.+. +..++. .|++|.+.|-+.+ .|.++.++-
T Consensus 160 i~giK------~---s---~~d~~~~~~~~~~~~~~f~vl~G~-d~~e~~~~~~~~-~G~~G~is~~an~-~P~~~~~l~ 224 (303)
T PRK03620 160 LVGFK------D---G---VGDIELMQRIVRALGDRLLYLGGL-PTAEVFAAAYLA-LGVPTYSSAVFNF-VPEIALAFY 224 (303)
T ss_pred EEEEE------e---C---CCCHHHHHHHHHHcCCCeEEEeCC-CcchhhHHHHHh-CCCCEEEecHHhh-hHHHHHHHH
Confidence 22221 1 1 23456666666554212 334443 11122 233444 4999998876654 366666554
No 489
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=88.78 E-value=1.7 Score=43.46 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=45.7
Q ss_pred CHHHHH-HHHHHHcCCCcEEEEecCCCchhhhcCcccccccC---ChHHHHHHHHHHhcccCccEEEEeccCCChhhHHH
Q 013813 168 DPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD---NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 243 (436)
Q Consensus 168 d~e~~~-~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~---~p~~v~eIv~av~~~~~iPVsVKiRlg~~~~d~~~ 243 (436)
+++... +|.+.+++|+|.|||+.-+-. -|+.... ..+++..+|+++++..++||+|-..- .+
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTr-------Pg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~-------~~ 101 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTR-------PGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSK-------PE 101 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCC-------HH
Confidence 444444 444677889999999953211 1222222 23446668888887778999988432 23
Q ss_pred HHHHHHHcCccEE
Q 013813 244 YAKMLEDAGCSLL 256 (436)
Q Consensus 244 ~ak~le~aG~d~I 256 (436)
.++.+.++|++.|
T Consensus 102 va~~AL~~GadiI 114 (282)
T PRK11613 102 VIRESAKAGAHII 114 (282)
T ss_pred HHHHHHHcCCCEE
Confidence 4555556677765
No 490
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=88.77 E-value=4.9 Score=38.54 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=78.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccC
Q 013813 157 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 157 e~plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg 235 (436)
+.|+|.=|.+.++++....++.+ +.|++.|||-+-.|. ..+.++.+++... -+.+. .|
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~------------------a~e~I~~l~~~~p-~~lIG--AG 70 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPA------------------ALEAIRALAKEFP-EALIG--AG 70 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCC------------------HHHHHHHHHHhCc-ccEEc--cc
Confidence 47899889999999999999765 568999999987665 3455666665543 12222 22
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVm 314 (436)
+.-+.. -++.+.++|+++| |+.. .+-+.++.. ...++|++ =|+.|+.++...++. |++.+=
T Consensus 71 -TVL~~~-q~~~a~~aGa~fi-VsP~-----------~~~ev~~~a-~~~~ip~~--PG~~TptEi~~Ale~-G~~~lK 131 (211)
T COG0800 71 -TVLNPE-QARQAIAAGAQFI-VSPG-----------LNPEVAKAA-NRYGIPYI--PGVATPTEIMAALEL-GASALK 131 (211)
T ss_pred -cccCHH-HHHHHHHcCCCEE-ECCC-----------CCHHHHHHH-HhCCCccc--CCCCCHHHHHHHHHc-Chhhee
Confidence 122222 2556778999987 3322 233444433 33456654 589999999999996 888653
No 491
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=88.75 E-value=2.1 Score=39.61 Aligned_cols=94 Identities=16% Similarity=0.346 Sum_probs=55.5
Q ss_pred HHHHHHHHhcccC-c-cEEEEeccCCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCH-HHHHHHHhh-CCCc
Q 013813 213 VKSLVEKLALNLN-V-PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIP 288 (436)
Q Consensus 213 v~eIv~av~~~~~-i-PVsVKiRlg~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~-~~i~~ik~~-~~iP 288 (436)
+.+.++.+++..+ . +|.|-++ +.++ ++.+.++|+|.|-+-.-+.+ ++ +.+..++.. .++.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~---~~ee----~~ea~~~g~d~I~lD~~~~~---------~~~~~v~~l~~~~~~v~ 129 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE---NLEE----AEEALEAGADIIMLDNMSPE---------DLKEAVEELRELNPRVK 129 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES---SHHH----HHHHHHTT-SEEEEES-CHH---------HHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHhCCCCceEEEEcC---CHHH----HHHHHHhCCCEEEecCcCHH---------HHHHHHHHHhhcCCcEE
Confidence 4566666666552 2 3666543 2233 44566799999977533211 11 223333322 3688
Q ss_pred EEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCc
Q 013813 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 324 (436)
Q Consensus 289 VianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~ 324 (436)
|.++|||+ .+.+.++.+ +|+|.+.+|.-.+.-|+
T Consensus 130 ie~SGGI~-~~ni~~ya~-~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 130 IEASGGIT-LENIAEYAK-TGVDVISVGSLTHSAPP 163 (169)
T ss_dssp EEEESSSS-TTTHHHHHH-TT-SEEEECHHHHSBE-
T ss_pred EEEECCCC-HHHHHHHHh-cCCCEEEcChhhcCCcc
Confidence 99999996 688888776 59999999976555444
No 492
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=88.72 E-value=27 Score=36.33 Aligned_cols=201 Identities=17% Similarity=0.184 Sum_probs=111.1
Q ss_pred HHHHhC--CCcEEEc---cCCCCCcHHHHHHHHHh---CCCeE-EeCcccchhhccChhhh---hhhhhccC----CCCC
Q 013813 96 HWTKLG--RPKLIVA---PMVDNSELPFRMLCRRY---GAEAA-YTPMLHSRIFTESEKYR---NEEFATCK----EDRP 159 (436)
Q Consensus 96 ~~~~lg--~~~i~lA---PM~gvtd~~fR~l~~~~---Ga~l~-~Temisa~~l~~~~~~~---~~~~~~~~----~e~p 159 (436)
.|+.+| .-|++.. |..+++-..|.+++.++ |+|.+ .-|......+...++.. ....+... ...+
T Consensus 121 ~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~ 200 (367)
T cd08205 121 LRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTL 200 (367)
T ss_pred HHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence 555555 2345544 66789999999999877 66765 33333333232221111 11122222 2345
Q ss_pred EEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEecc----
Q 013813 160 LFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---- 234 (436)
Q Consensus 160 livQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRl---- 234 (436)
+++.+.+.. +++.+-++.+ +.|+|++-++... ||-.. ++.+++..++|+..=...
T Consensus 201 y~~nit~~~-~e~i~~a~~a~~~Gad~vmv~~~~---------~g~~~----------~~~l~~~~~lpi~~H~a~~ga~ 260 (367)
T cd08205 201 YAPNITGDP-DELRRRADRAVEAGANALLINPNL---------VGLDA----------LRALAEDPDLPIMAHPAFAGAL 260 (367)
T ss_pred EEEEcCCCH-HHHHHHHHHHHHcCCCEEEEeccc---------ccccH----------HHHHHhcCCCeEEEccCccccc
Confidence 667777665 7777777665 4599999998531 22111 112222335555443221
Q ss_pred ---CCChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhC-------C--CcEEEccCCCCHHHHH
Q 013813 235 ---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-------R--IPVLANGNVRHMEDVQ 302 (436)
Q Consensus 235 ---g~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~-------~--iPVianGGI~s~eda~ 302 (436)
........-+.+...-+|+|.+++.+-.. + . ...-+.+.++.+.. + .|+ .+||+. +..+.
T Consensus 261 ~~~~~~g~~~~~~~kl~RlaGad~~~~~~~~g--k--~--~~~~~~~~~la~~~~~~~~~iK~~~Pv-~sgG~~-~~~v~ 332 (367)
T cd08205 261 SRSPDYGSHFLLLGKLMRLAGADAVIFPGPGG--R--F--PFSREECLAIARACRRPLGGIKPALPV-PSGGMH-PGRVP 332 (367)
T ss_pred ccCCCCcCCHHHHHHHHHHcCCCccccCCCcc--C--c--CCCHHHHHHHHHHHhCccccCCCceee-ccCCCC-HHHHH
Confidence 11122445678888889999987743321 1 1 12234444454421 1 233 355665 58888
Q ss_pred HHHHhcCcce-eeeehHHhhCCc
Q 013813 303 KCLEETGCEG-VLSAESLLENPA 324 (436)
Q Consensus 303 ~~l~~tGaDg-VmIGRgal~nP~ 324 (436)
++++..|.|. +++|-+++..|+
T Consensus 333 ~l~~~~G~dv~~~~GGgi~gHp~ 355 (367)
T cd08205 333 ELYRDYGPDVILLAGGGILGHPD 355 (367)
T ss_pred HHHHHhCCcEEEEcCchhcCCCC
Confidence 9999889885 456778899997
No 493
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=88.71 E-value=0.44 Score=46.61 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=34.9
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 328 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~ 328 (436)
+++|++.|+|+. +++.++++...+||+.||++.+. +.-|.+
T Consensus 199 ~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl~-~~~f~~ 239 (242)
T cd00311 199 KVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASLK-AESFLD 239 (242)
T ss_pred ceeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhhC-HHHHHH
Confidence 589999999997 99999999866999999999984 555544
No 494
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=88.67 E-value=20 Score=36.26 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=79.7
Q ss_pred CCEEEEecCCCHHHHHHHH-HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccC-ccEEEEeccC
Q 013813 158 RPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF 235 (436)
Q Consensus 158 ~plivQL~g~d~e~~~~AA-~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~-iPVsVKiRlg 235 (436)
.|+..-+...+++++.+.+ +.++.|+..+-|-+| | +.-.+.++++++.++ +.+.+--.-+
T Consensus 119 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~-~-----------------~~d~~~v~avr~~~~~~~l~vDaN~~ 180 (321)
T PRK15129 119 VTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLD-N-----------------HLISERMVAIRSAVPDATLIVDANES 180 (321)
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCC-C-----------------chHHHHHHHHHHhCCCCeEEEECCCC
Confidence 3444445456777766555 456779999888752 1 011255667776652 3344444447
Q ss_pred CChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCCCHHHHHHHHHhcCcceeee
Q 013813 236 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 315 (436)
Q Consensus 236 ~~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~s~eda~~~l~~tGaDgVmI 315 (436)
|+.+++..+++.+++.++.+| +|... ..+++.++... .++||.+.=.+.+.+|+.++. ..+|.|.+
T Consensus 181 w~~~~A~~~~~~l~~~~i~~i-------EqP~~---~~~~~~l~~~~--~~~pia~dEs~~~~~d~~~~~--~~~d~v~~ 246 (321)
T PRK15129 181 WRAEGLAARCQLLADLGVAML-------EQPLP---AQDDAALENFI--HPLPICADESCHTRSSLKALK--GRYEMVNI 246 (321)
T ss_pred CCHHHHHHHHHHHHhcCceEE-------ECCCC---CCcHHHHHHhc--cCCCEecCCCCCCHHHHHHHH--hhCCEEEe
Confidence 888899999999999988877 22111 12444444332 479999988999999998874 25666543
No 495
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=88.64 E-value=23 Score=35.02 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCCHHHHHHHH----HHHc-CCCcEEEE-ecC-CCchhhhcCcccccccCChHH---HHHHHHHHhcccCccEEEEeccC
Q 013813 166 ANDPEILLNAA----RRVE-PYCDYVDI-NLG-CPQRIARRGNYGAFLMDNLPL---VKSLVEKLALNLNVPVSCKIRVF 235 (436)
Q Consensus 166 g~d~e~~~~AA----~~v~-~g~D~IdL-N~G-CP~~~~~~~~~Gs~Ll~~p~~---v~eIv~av~~~~~iPVsVKiRlg 235 (436)
+.+.+++.+.| +.++ .|+|+|-+ |++ -|... --.|+. +..|+.+++..+++|+.|- +.
T Consensus 20 ~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~----------~~~p~tva~m~~i~~~v~~~~~~p~Gvn--vL 87 (257)
T TIGR00259 20 DDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLK----------EVDPETVAAMAVIAGQLKSDVSIPLGIN--VL 87 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcC----------CCCHHHHHHHHHHHHHHHHhcCCCeeee--ee
Confidence 44555555554 2334 48999888 654 35432 113444 3456677888888997665 33
Q ss_pred C-ChhhHHHHHHHHHHcCccEEEeccCcc--cccCCCCCccCHHHHHHHHhhC--CCcEEEc---------cCCCCHHHH
Q 013813 236 P-NLQDTIKYAKMLEDAGCSLLAVHGRTR--DEKDGKKFRADWNAIKAVKNAL--RIPVLAN---------GNVRHMEDV 301 (436)
Q Consensus 236 ~-~~~d~~~~ak~le~aG~d~I~VHgRt~--~~~~~~~g~ad~~~i~~ik~~~--~iPVian---------GGI~s~eda 301 (436)
+ +...++.+ +...|+++|-+-.-+. ....+.- ..+-..+-+.++.+ ++.|+++ ++..-.+.+
T Consensus 88 ~nd~~aal~i---A~a~ga~FIRv~~~~g~~~~d~G~~-~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a 163 (257)
T TIGR00259 88 RNDAVAALAI---AMAVGAKFIRVNVLTGVYASDQGII-EGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIA 163 (257)
T ss_pred cCCCHHHHHH---HHHhCCCEEEEccEeeeEecccccc-cccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHH
Confidence 2 33444444 4589999996622111 1111110 12223334444443 3444432 233333446
Q ss_pred HHHHHhcCcceeeee
Q 013813 302 QKCLEETGCEGVLSA 316 (436)
Q Consensus 302 ~~~l~~tGaDgVmIG 316 (436)
+.......+|+|.+.
T Consensus 164 ~~~~~~~~aDavivt 178 (257)
T TIGR00259 164 LDTVERGLADAVILS 178 (257)
T ss_pred HHHHHhcCCCEEEEC
Confidence 666666569999875
No 496
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=88.60 E-value=19 Score=35.30 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=63.9
Q ss_pred CEEEEecCCCHHHHHHHHHHH-cCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhccc-CccEEEEeccCC
Q 013813 159 PLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 236 (436)
Q Consensus 159 plivQL~g~d~e~~~~AA~~v-~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~-~iPVsVKiRlg~ 236 (436)
.+++-|.|.+.+++.+.++.+ ..++|.||+=+.. +.. +.+.+.+.+++..+++.. ++|+.+=+|.-+
T Consensus 17 ~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~---------l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~ 85 (253)
T PRK02412 17 KIIVPIMGKTLEEVLAEALAISKYDADIIEWRADF---------LEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTAK 85 (253)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEech---------hhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 467999999999998887655 4589999997631 111 124566777777777765 589998888721
Q ss_pred -------ChhhHHHHHHHHHHcC-ccEEEec
Q 013813 237 -------NLQDTIKYAKMLEDAG-CSLLAVH 259 (436)
Q Consensus 237 -------~~~d~~~~ak~le~aG-~d~I~VH 259 (436)
+.++-.++.+.+.+.| +++|.|-
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiE 116 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVE 116 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3344456677777888 8999885
No 497
>PRK14567 triosephosphate isomerase; Provisional
Probab=88.57 E-value=0.64 Score=45.80 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCcEEEccCCCCHHHHHHHHHhcCcceeeeehHHhhCCccchhh
Q 013813 286 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 329 (436)
Q Consensus 286 ~iPVianGGI~s~eda~~~l~~tGaDgVmIGRgal~nP~lf~~i 329 (436)
+++|++.|+| +++.+.++++...+||+.||++.+ +|.-|.++
T Consensus 202 ~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGgasL-~~~~F~~I 243 (253)
T PRK14567 202 NIKIVYGGSL-KAENAKDILSLPDVDGGLIGGASL-KAAEFNEI 243 (253)
T ss_pred cceEEEcCcC-CHHHHHHHHcCCCCCEEEeehhhh-cHHHHHHH
Confidence 5899999999 899999999987899999999987 56666554
No 498
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.43 E-value=23 Score=39.28 Aligned_cols=236 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHH--HHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC----Ch
Q 013813 165 CANDPEILLNAA--RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP----NL 238 (436)
Q Consensus 165 ~g~d~e~~~~AA--~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~----~~ 238 (436)
+.+-|++..+.- +.++.|.|.|.|=.. +++.+.+...++.+++. +.-+.+-+-... +.
T Consensus 90 y~~ypd~vv~~~v~~A~~~Gvd~irif~~---------------lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~ 153 (592)
T PRK09282 90 YRHYPDDVVEKFVEKAAENGIDIFRIFDA---------------LNDVRNMEVAIKAAKKA-GAHVQGTISYTTSPVHTI 153 (592)
T ss_pred cccccchhhHHHHHHHHHCCCCEEEEEEe---------------cChHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCH
Q ss_pred hhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEE----ccCCCCHHHHHHHHHhcCcceee
Q 013813 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA----NGNVRHMEDVQKCLEETGCEGVL 314 (436)
Q Consensus 239 ~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVia----nGGI~s~eda~~~l~~tGaDgVm 314 (436)
+...++++.+.++|++.|.+ ++.........-.++++.+++.+++||-. +.|.. ......+++. |||.|-
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i----~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla-~An~laAv~a-Gad~vD 227 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICI----KDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLA-PMTYLKAVEA-GVDIID 227 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEE----CCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcH-HHHHHHHHHh-CCCEEE
Q ss_pred -----eehHHhhCCccchhhhhhhhccCCcccCCCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhcCC--HH
Q 013813 315 -----SAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQ--PG 387 (436)
Q Consensus 315 -----IGRgal~nP~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~R~hl~~~l~~~~~~~--~~ 387 (436)
+|.+. .||.+-.-+..-...............+-.+.+.+..+..+.+..........+ +.+. ++|. ..
T Consensus 228 ~ai~g~g~~a-gn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~~~~~~~~~v--~~~~-~pGg~~sn 303 (592)
T PRK09282 228 TAISPLAFGT-SQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFESEFTIVDTRV--LIHQ-VPGGMISN 303 (592)
T ss_pred eeccccCCCc-CCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCCccccCCccE--EEEc-CCCcHHHH
Q ss_pred HHHHHHhcchhc-HHHHHHHHHHHHHhcCCCCCCCCCcch
Q 013813 388 VREDLNAQNRLT-FEFLYNLVDRLRELGVRIPLYKKDADD 426 (436)
Q Consensus 388 ~r~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (436)
+...+.+..-.+ ++++.+-+.+..++-..+|++.+-|+.
T Consensus 304 l~~q~~~~g~~d~~~~vl~e~~~v~~~lG~~~~VTP~Sq~ 343 (592)
T PRK09282 304 LVSQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTSQI 343 (592)
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCeECChhHh
No 499
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=88.41 E-value=2.3 Score=42.18 Aligned_cols=104 Identities=14% Similarity=0.264 Sum_probs=63.4
Q ss_pred HHHHHHHHhcccCccEEEEeccCC-ChhhHHHHHHHHHHcCccEEEeccCccccc---------------CCCCCccCHH
Q 013813 213 VKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWN 276 (436)
Q Consensus 213 v~eIv~av~~~~~iPVsVKiRlg~-~~~d~~~~ak~le~aG~d~I~VHgRt~~~~---------------~~~~g~ad~~ 276 (436)
+.+..+.++..-..-+..=+-.|+ +.+.+.++++.|.+.|+|.|-+-=-..++. .+.+....++
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~le 83 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLE 83 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHH
Confidence 344445554443333344444554 788999999999999999998832222211 1222234578
Q ss_pred HHHHHHhh-CCCcEEEccCCC-----CHHHHHHHHHhcCcceeeee
Q 013813 277 AIKAVKNA-LRIPVLANGNVR-----HMEDVQKCLEETGCEGVLSA 316 (436)
Q Consensus 277 ~i~~ik~~-~~iPVianGGI~-----s~eda~~~l~~tGaDgVmIG 316 (436)
+++++++. .++|++.=+=.+ -.+...+.+++.|+||+++-
T Consensus 84 l~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp 129 (265)
T COG0159 84 LVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP 129 (265)
T ss_pred HHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC
Confidence 88888854 788887554211 12343445556799999884
No 500
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=88.15 E-value=24 Score=33.61 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=80.7
Q ss_pred EEEEecCC-CHHHHHHHHHHHcCCCcEEEEecCCCchhhhcCcccccccCChHHHHHHHHHHhcccCccEEEEeccCC--
Q 013813 160 LFVQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-- 236 (436)
Q Consensus 160 livQL~g~-d~e~~~~AA~~v~~g~D~IdLN~GCP~~~~~~~~~Gs~Ll~~p~~v~eIv~av~~~~~iPVsVKiRlg~-- 236 (436)
+++.|.+. +.++..+.++... |+|.||+=+..= ... ..+.+.+.++.+++..++|+.+=+|.-+
T Consensus 2 i~~~i~~~~~~~e~~~~~~~~~-~aD~vElR~D~~---------~~~---~~~~~~~~~~~lr~~~~~piI~T~R~~~eG 68 (225)
T cd00502 2 ICVPLTGPDLLEEALSLLELLL-GADAVELRVDLL---------EDP---SIDDVAEQLSLLRELTPLPIIFTVRTKSEG 68 (225)
T ss_pred EEEEecCCCCHHHHHHHHHHhc-CCCEEEEEEeec---------ccc---chHHHHHHHHHHHHhCCCCEEEEEcccccC
Confidence 57888888 7777666665554 899999975421 110 1456777888888777789998888721
Q ss_pred -----ChhhHHHHHHHHHHcCccEEEeccCcccccCCCCCccCHHHHHHHHhhCCCcEEEccCCC----CHHHHHHHH--
Q 013813 237 -----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR----HMEDVQKCL-- 305 (436)
Q Consensus 237 -----~~~d~~~~ak~le~aG~d~I~VHgRt~~~~~~~~g~ad~~~i~~ik~~~~iPVianGGI~----s~eda~~~l-- 305 (436)
+.++-.++.+.+.+.|+++|.|--.+ . .. -+.+..++ .-+..||++-=-+ +.++....+
T Consensus 69 G~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-~-------~~-~~~~~~~~-~~~~kiI~S~H~f~~tp~~~~l~~~~~~ 138 (225)
T cd00502 69 GNFEGSEEEYLELLEEALKLGPDYVDIELDS-A-------LL-EELINSRK-KGNTKIIGSYHDFSGTPSDEELVSRLEK 138 (225)
T ss_pred CCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-h-------HH-HHHHHHHH-hCCCEEEEEeccCCCCcCHHHHHHHHHH
Confidence 33455677777888899999885432 1 00 12222222 2466777766322 234443333
Q ss_pred -HhcCcceeeee
Q 013813 306 -EETGCEGVLSA 316 (436)
Q Consensus 306 -~~tGaDgVmIG 316 (436)
...|||.|=+.
T Consensus 139 ~~~~gadivKla 150 (225)
T cd00502 139 MAALGADIVKIA 150 (225)
T ss_pred HHHhCCCEEEEE
Confidence 33467766554
Done!