RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013813
(436 letters)
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 145 bits (366), Expect = 7e-41
Identities = 71/312 (22%), Positives = 140/312 (44%), Gaps = 14/312 (4%)
Query: 104 KLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQ 163
K+ +APM ++ FR L +GA+ A++ M+ ++ F + + + EE +R + VQ
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAVQ 60
Query: 164 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 223
++P L AAR + ++D+N GCP R + G L+ +L + +V +L +
Sbjct: 61 IFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKS 120
Query: 224 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 283
++ S K R+ + + ++L + G + +H RT RA+W A+ ++
Sbjct: 121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTV--VQSFTGRAEWKALSVLEK 178
Query: 284 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 343
+ V +G++ ED ++ LEE+GC+G+L A + P +F + S + S+
Sbjct: 179 RIPTFV--SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLR---SGKYSE 233
Query: 344 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLT---- 399
+ +L+L K + + + K L + + G R ++
Sbjct: 234 PSREEILRTFERHLELLIKTKGERKAVV-EMRKFLAGYTKDLKGARRFREKVMKIEEVQI 292
Query: 400 -FEFLYNLVDRL 410
E YN + +
Sbjct: 293 LKEMFYNFIKEV 304
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 49.5 bits (117), Expect = 2e-07
Identities = 26/196 (13%), Positives = 55/196 (28%), Gaps = 38/196 (19%)
Query: 168 DPEILLNAARRVE-PYCDYVDINLGCPQRIARR--------------GNYGAFLMDNLPL 212
I+ A + N + + F+
Sbjct: 21 SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE 80
Query: 213 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY-------------------AKMLEDAGC 253
V L+E + + + + R L + + Y AK G
Sbjct: 81 VDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGF 140
Query: 254 SLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 311
+ HG T + ++ D+ +K V ++ V+A GNV + ++ + + G
Sbjct: 141 DYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVM-DLGVH 199
Query: 312 GVLSAESLLENPALFA 327
+ ++ P
Sbjct: 200 CSVVGGAIT-RPKEIT 214
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 49.6 bits (117), Expect = 3e-07
Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 25/193 (12%)
Query: 144 EKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYG 203
+ + + N + + + + D +++NL CP + RG
Sbjct: 91 QSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGL 150
Query: 204 AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA--KMLEDAGCSLLAVHGR 261
A D LV+++ + + +P K+ +I A + D + V G
Sbjct: 151 ACGQDPE-LVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGL 209
Query: 262 TRDEKDGKKFRA--------------------DWNAIKAVKNAL-RIPVLANGNVRHMED 300
+ DG + A A+ + AL P+LA G + E
Sbjct: 210 MGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAES 269
Query: 301 VQKCLEETGCEGV 313
+ L +G +
Sbjct: 270 GLQFL-HSGASVL 281
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 46.9 bits (111), Expect = 1e-06
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 299
D +K+AK +E+ G + + T ++DG D I+ V +++RIPV+A+G +E
Sbjct: 154 DAVKWAKEVEELGAGEILL---TSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVE 210
Query: 300 DVQKCLEETGCEGVLSAESLLEN 322
+ G + VL+A
Sbjct: 211 HFYE-AAAAGADAVLAASLFHFR 232
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 46.2 bits (108), Expect = 3e-06
Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 25/227 (11%)
Query: 119 RMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARR 178
R+ G A +EK + V + + A
Sbjct: 62 RVAETASGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIG 121
Query: 179 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 238
+++N+ CP + + + +LV+ VP+ K+ PN+
Sbjct: 122 DAANVKAIELNISCPNVKHGGQAF----GTDPEVAAALVKACKAVSKVPLYVKL--SPNV 175
Query: 239 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------------------KKFRADWNAIKA 280
D + AK +E AG L + + I
Sbjct: 176 TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQ 235
Query: 281 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 327
V + IP++ G V + +DV + G V + +P +
Sbjct: 236 VAQDVDIPIIGMGGVANAQDVLEMYM-AGASAVAVGTANFADPFVCP 281
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 323
Score = 44.4 bits (104), Expect = 1e-05
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 13/164 (7%)
Query: 168 DPEILLNAARRVEPYCDYVDINLGC-PQRI-----ARRGNYGAFLMDNLPLVKSLVEKLA 221
E R + I+ Q + +R + + ++
Sbjct: 141 AAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPN 200
Query: 222 LNLNVPVSCKI---RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 278
C I R +L + + E G + ++ +D + D I
Sbjct: 201 GEKYCWYQCTIKGGRESRDLGV-WELTRACEALGAGEILLNCIDKDGSNS---GYDLELI 256
Query: 279 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322
+ VK+A++IPV+A+ E ++ +T + L A
Sbjct: 257 EHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 300
Score = 27.8 bits (61), Expect = 2.6
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 4/110 (3%)
Query: 223 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 282
+V + NL ++ A+ G + T K +K
Sbjct: 32 QYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAA 91
Query: 283 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 332
+ +P+ G ++ + DV + T + A + A T
Sbjct: 92 KTVFVPLTVGGGIKDIVDV----DGTKIPALEVASLYFRSGADKVSIGTD 137
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 42.5 bits (99), Expect = 3e-05
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 241 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 300
T + AG + ++ D I+A+ A I V+A G + E+
Sbjct: 139 TFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEE 197
Query: 301 VQKCLEETGCEGVLSAESLLENPALFAGFRTA 332
+K + G G++ ++ + F A
Sbjct: 198 AKKIN-DLGVAGIVVGGAITRPKEIAERFIEA 228
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 41.8 bits (97), Expect = 9e-05
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 227 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAV 281
+ + +T++ A+ +E AG +++ R A + +
Sbjct: 216 SMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL 275
Query: 282 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
K + +P++ + + L + V A L + L
Sbjct: 276 KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAEL 319
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 40.1 bits (93), Expect = 3e-04
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 240 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 299
+++A + G + + T ++DG K D + V A+ +PV+A+G ME
Sbjct: 152 HAVEWAVKGVELGAGEILL---TSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRME 208
Query: 300 DVQKCLEETGCEGVLSAESLLEN 322
+ + G E L+A
Sbjct: 209 HFLE-AFQAGAEAALAASVFHFG 230
>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Streptomyces
coelicolor [TaxId: 1902]}
Length = 239
Score = 37.6 bits (86), Expect = 0.002
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 244 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 303
L GC+ V +D G + +K V A PV+A+G V ++D++
Sbjct: 150 TLDRLNKEGCARYVVTDIAKD---GTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRA 206
Query: 304 C--LEETGCEGVLSAESLLEN 322
L G EG + ++L
Sbjct: 207 IAGLVPAGVEGAIVGKALYAK 227
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 36.8 bits (84), Expect = 0.002
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 402 FLYNLVDRLRELGVRIPLYKKDADDAEILADD 433
+ + LRELGV + D D +E+ D
Sbjct: 13 WTHREWRVLRELGVDTKIVPNDIDSSELDGLD 44
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus
subtilis [TaxId: 1423]}
Length = 337
Score = 37.6 bits (86), Expect = 0.002
Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 7/157 (4%)
Query: 176 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 235
+ Y+ P R YG + ++ +++++ + P+ ++
Sbjct: 159 VIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSAS 218
Query: 236 PNLQD------TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIP 288
I +AK +++ G L+ D F + + ++ +
Sbjct: 219 DYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMA 278
Query: 289 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
A G + ++ L+ + + LL +P
Sbjct: 279 TGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFF 315
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 36.9 bits (84), Expect = 0.004
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 237 NLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNA--IKAVKNALRIPVLANG 293
+ Q ++ A L D ++ + D + ++ +K VK + PVL G
Sbjct: 239 DGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVG 298
Query: 294 NVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
E + + + + + + A + +P L
Sbjct: 299 RYTDPEKMIEIVTKGYADIIGCARPSIADPFL 330
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 36.0 bits (83), Expect = 0.006
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 231 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNALRIPV 289
V P D + A+ LE+ G + G + + + ++PV
Sbjct: 125 GFIVLPYTSDDVVLARKLEELGVHAIMPGASPI----GSGQGILNPLNLSFIIEQAKVPV 180
Query: 290 LANGNVRHMEDVQKCLEETGCEGVL--SAESLLENPALFA-GFRTA 332
+ + + +D + E G +GVL +A S ++P A + A
Sbjct: 181 IVDAGIGSPKDAAYAM-ELGADGVLLNTAVSGADDPVKMARAMKLA 225
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 35.7 bits (82), Expect = 0.007
Identities = 41/232 (17%), Positives = 70/232 (30%), Gaps = 48/232 (20%)
Query: 135 LHSRIFTESEKYRNEEFATCKE-----------------------DRPLFVQFC-ANDPE 170
SR+ + KY++ + D P + +
Sbjct: 10 YGSRLLVGTGKYKD--LDETRRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPPDRYT 67
Query: 171 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMD------NLPLVKSLVEKLALNL 224
IL N A + R+AR G L+ L ++VE
Sbjct: 68 ILPNTAGCYDAVEAVR------TCRLARELLDGHNLVKLEVLADQKTLFPNVVE-TLKAA 120
Query: 225 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKAVKN 283
V V D A+ L + GC + G + ++ +
Sbjct: 121 EQLVKDGFDVMVYTSDDPIIARQLAEIGCIAV----MPLAGLIGSGLGICNPYNLRIILE 176
Query: 284 ALRIPVLANGNVRHMEDVQKCLEETGCEGVL--SAESLLENPALFA-GFRTA 332
++PVL + V D + E GCE VL +A + ++P + A + A
Sbjct: 177 EAKVPVLVDAGVGTASDAAIAM-ELGCEAVLMNTAIAHAKDPVMMAEAMKHA 227
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli
[TaxId: 562]}
Length = 289
Score = 35.5 bits (81), Expect = 0.009
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 18/140 (12%)
Query: 230 CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 289
L I+ A+ +AG +L T + + +A+++P+
Sbjct: 157 TDALAVEGLDAAIERAQAYVEAGAEMLFPEAIT-----------ELAMYRQFADAVQVPI 205
Query: 290 LANGNVRHMEDVQKC--LEETGCEGVLSAESLLENPALFAGFRTAEWIV--GSEEISKDG 345
LAN + L L S A + G+++ D
Sbjct: 206 LANITEFGATPLFTTDELRSAHVAMALYPLSAFR-AMNRAAEHVYNVLRQEGTQKSVIDT 264
Query: 346 NLDQADL--LVEYLKLCEKY 363
+ +L + Y + EK
Sbjct: 265 MQTRNELYESINYYQYEEKL 284
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 32.9 bits (74), Expect = 0.040
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 402 FLYNLVDRLRELGVRIPLYKKDADDAEILADDLA 435
F YNLVD+LR G ++ +Y+ I+
Sbjct: 12 FTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQH 45
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 32.2 bits (72), Expect = 0.067
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 402 FLYNLVDRLRELGVRIPLYKKDADDAEI 429
+++ + LR LGV + EI
Sbjct: 12 YVHRIWRTLRYLGVETKIIPNTTPLEEI 39
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 31.7 bits (71), Expect = 0.14
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 265 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 322
++DG K D I+ V+ +P++A+G ME + G + L+A
Sbjct: 174 DRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLE-AFLAGADAALAASVFHFR 230
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 31.0 bits (69), Expect = 0.17
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 402 FLYNLVDRLRELGVRIPLYKKDADDAE 428
F+YN+ + ELG + + D +
Sbjct: 13 FVYNIAQIVGELGSYPIVIRNDEISIK 39
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium
sterolicum [TaxId: 1702]}
Length = 216
Score = 30.8 bits (68), Expect = 0.27
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 77 LPSPRGYLSGEARAERAWAHWTKL--GRPKLIVAP 109
LP+P + + A ++A+ +W+K + +P
Sbjct: 3 LPTPPNFPNDIALFQQAYQNWSKEIMLDATWVCSP 37
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 28.6 bits (64), Expect = 0.30
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 331 TAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY 363
T +W++ + E ++ +L ++ L YL ++
Sbjct: 1 TVQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQ 33
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga maritima
[TaxId: 2336]}
Length = 241
Score = 30.4 bits (67), Expect = 0.39
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 267 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK-----CLEETGCEGVLSAESLLE 321
DG D++ K + + VLA G + ++ +GV+ + LE
Sbjct: 169 DGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLE 228
Query: 322 N 322
Sbjct: 229 G 229
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 29.6 bits (66), Expect = 0.71
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 231 KIRVFPNLQDTIKY-AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 280
F A L AG S++ ++ +T + + + + I A
Sbjct: 38 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILA 88
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 29.0 bits (64), Expect = 0.75
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 245 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 304
A E G L + ++ + +++IPV+A G + ++ ++
Sbjct: 112 ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREV 170
Query: 305 LEETGCEGVLSAESLLENP 323
L +TG +G+ +++
Sbjct: 171 L-KTGVDGIAVISAVMGAE 188
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 27.6 bits (60), Expect = 3.0
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 277 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 325
+ V + + PV+ GN +V + + + + NP L
Sbjct: 308 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDL 356
>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}
Length = 332
Score = 27.7 bits (60), Expect = 3.1
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 364 PVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLT 399
+ +L + + + PGV ++
Sbjct: 254 GANCYDEIKKIRELFPDCYILAPGVGAQKGDLRKML 289
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS
{Bacillus subtilis [TaxId: 1423]}
Length = 118
Score = 26.5 bits (58), Expect = 3.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 137 SRIFTESEKYRNEEFATCKEDRPLFVQFCAND 168
RI T SE + E + +++ L +F A +
Sbjct: 27 ERILTRSELDQYYELSEKRKNEFLAGRFAAKE 58
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 27.7 bits (60), Expect = 3.5
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 14 TSLYPPLPTVKPTMAQTRTRTLHSDPSQDSD 44
T Y LPTV A +S S
Sbjct: 523 TQTYQALPTVTSAGASLLPPEDNSQASPVPP 553
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 25.3 bits (54), Expect = 4.5
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 6/64 (9%)
Query: 112 DNSELPFRMLCRRYGAEAAYTPMLHSRIFTE------SEKYRNEEFATCKEDRPLFVQFC 165
D + L Y + + F +E N + +R L VQ
Sbjct: 9 DVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQ 68
Query: 166 ANDP 169
D
Sbjct: 69 PTDA 72
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Length = 172
Score = 26.5 bits (59), Expect = 4.8
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 277 AIKAVKNALRIPVLANGNVRHMEDVQKCLE 306
A K + V+A G V E+ ++ L+
Sbjct: 128 APKVARKIPGRTVIAAGLVETEEEAREILK 157
>d2gvka1 d.58.4.14 (A:8-316) Hypothetical protein BT1219
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 309
Score = 26.8 bits (59), Expect = 5.0
Identities = 4/30 (13%), Positives = 7/30 (23%), Gaps = 2/30 (6%)
Query: 150 EFATCKEDRPLFVQFCANDPEILLNAARRV 179
+ D L A + A +
Sbjct: 93 TAVSTPGD--LLFHIRAKQMGLCFEFASIL 120
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 136
Score = 25.9 bits (57), Expect = 5.7
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 21/71 (29%)
Query: 95 AHWTKLGRPKLIVAPMV-DNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAT 153
AHW + A M+ DN P ++ + E + YR
Sbjct: 4 AHWKE--------AKMLLDNINTPEGIIPSMFEPEREKVDAIDGE-------YRLRG--- 45
Query: 154 CKEDRPLFVQF 164
E R FV
Sbjct: 46 --EARKTFVDL 54
>d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 117
Score = 25.7 bits (56), Expect = 6.1
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 137 SRIFTESEKYRNEEFATCKEDRPLFVQFCAND 168
R+ T E R ++ L ++ A +
Sbjct: 27 KRVLTALEMERFTSLKGRRQIEYLAGRWSAKE 58
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog
{Lactococcus lactis, DpsA [TaxId: 1358]}
Length = 168
Score = 26.1 bits (57), Expect = 6.6
Identities = 7/69 (10%), Positives = 19/69 (27%), Gaps = 17/69 (24%)
Query: 350 ADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDR 409
+++ E + L ++ E E+ Y + ++
Sbjct: 31 SNIFYEKISL---MQAGLYAKSANYRIKFREIA-------LKE-------DEWFYLISEQ 73
Query: 410 LRELGVRIP 418
L + +P
Sbjct: 74 LLDENELVP 82
>d2iiza1 d.58.4.14 (A:5-310) Melanin biosynthesis protein TyrA
{Shewanella oneidensis [TaxId: 70863]}
Length = 306
Score = 26.0 bits (57), Expect = 9.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 160 LFVQFCANDPEILLNAARRV 179
LFV + +IL A +
Sbjct: 98 LFVHLRCDRYDILHLVANEI 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,667,577
Number of extensions: 79732
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 43
Length of query: 436
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 348
Effective length of database: 1,199,356
Effective search space: 417375888
Effective search space used: 417375888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)