BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013814
         (436 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WNB|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In
           Complex With Disaccharide And Cmp
 pdb|2WNF|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In
           Complex With Gal-Beta-1-3galnac-Ortho-Nitrophenol
          Length = 298

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 19/152 (12%)

Query: 173 RCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDK 232
           RCAV+GNSG+L ++ +G +ID +D V+R N AP + +   VG K+T   +   S + L +
Sbjct: 99  RCAVVGNSGNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELAQ 158

Query: 233 -----VVELDETRKEVLIVKTTIHDIMSKMI---QEIPIKNPVYLMLGAAF--------- 275
                +V    T  E +I  TT   I    +    +I +K    L+   AF         
Sbjct: 159 EVSXILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFDRWL 218

Query: 276 --GSAAKGTGLKALEFALSICDSVDMYGFTVD 305
                   TG+ ++ F+L ICD VD+YGF  D
Sbjct: 219 QGHGRYPSTGILSVIFSLHICDEVDLYGFGAD 250


>pdb|2WML|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase
          Length = 298

 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 19/152 (12%)

Query: 173 RCAVIGNSGDLLKTRFGKEIDGYDVVIRENGAPIQNYTDYVGKKSTFRLLNRGSAKALDK 232
           RCAV+GNSG+L ++ +G +ID +D V+R N AP + +   VG K+T   +   S + L +
Sbjct: 99  RCAVVGNSGNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELAQ 158

Query: 233 -----VVELDETRKEVLIVKTTIHDIMSKMI---QEIPIKNPVYLMLGAAF--------- 275
                +V    T  E +I  TT   I    +    +I +K    L+   AF         
Sbjct: 159 EVSXILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFDRWL 218

Query: 276 --GSAAKGTGLKALEFALSICDSVDMYGFTVD 305
                   TG+ ++ F+L ICD VD+YGF  D
Sbjct: 219 QGHGRYPSTGILSVIFSLHICDEVDLYGFGAD 250


>pdb|1BF5|A Chain A, Tyrosine Phosphorylated Stat-1DNA COMPLEX
          Length = 575

 Score = 31.6 bits (70), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 88  TGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAW 134
           T EL SLSF+  LC+     +    S  ++    +  LP+GW    W
Sbjct: 292 TEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILW 338


>pdb|2IUT|A Chain A, P. Aeruginosa Ftsk Motor Domain, Dimeric
 pdb|2IUT|B Chain B, P. Aeruginosa Ftsk Motor Domain, Dimeric
          Length = 574

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 306 PGYKEWTRYFSESRKGHTPLHGRAY-------YHMMECLGLVKIHSPMRANPNR-VVKWV 357
           P Y E  R+ +ESR+       R           M+E + +  + +PM  N +R V+   
Sbjct: 503 PLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPA 562

Query: 358 PSRDKI 363
           P RDK+
Sbjct: 563 PVRDKL 568


>pdb|1YVL|A Chain A, Structure Of Unphosphorylated Stat1
 pdb|1YVL|B Chain B, Structure Of Unphosphorylated Stat1
          Length = 683

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 88  TGELESLSFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWEEYAW 134
           T EL SLSF+  LC+     +    S  ++    +  LP+GW    W
Sbjct: 427 TEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILW 473


>pdb|3S6P|A Chain A, Crystal Structure Of Helicoverpa Armigera Stunt Virus
 pdb|3S6P|B Chain B, Crystal Structure Of Helicoverpa Armigera Stunt Virus
 pdb|3S6P|C Chain C, Crystal Structure Of Helicoverpa Armigera Stunt Virus
 pdb|3S6P|D Chain D, Crystal Structure Of Helicoverpa Armigera Stunt Virus
          Length = 575

 Score = 28.1 bits (61), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 95  SFDFNLCEAVAAWERVRNSTTILTKEYIDALPNGWE 130
           SFD N+  AVA +  + +S +I+TK Y      GWE
Sbjct: 502 SFDQNMSTAVAHFRSLSHSCSIVTKTY-----QGWE 532


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,101,871
Number of Sequences: 62578
Number of extensions: 553455
Number of successful extensions: 1235
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 10
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)