Query 013817
Match_columns 436
No_of_seqs 366 out of 1380
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 17:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 3.2E-29 1.1E-33 258.9 21.2 222 8-270 107-339 (428)
2 1yt3_A Ribonuclease D, RNAse D 100.0 2.4E-27 8E-32 241.7 22.4 239 10-300 2-251 (375)
3 2hbj_A Exosome complex exonucl 99.9 7E-27 2.4E-31 240.8 22.6 241 11-299 87-349 (410)
4 2e6m_A Werner syndrome ATP-dep 99.9 4.1E-27 1.4E-31 220.5 18.5 184 6-222 12-201 (208)
5 1vk0_A Hypothetical protein; h 99.9 3.6E-27 1.2E-31 221.5 15.0 166 20-214 28-205 (206)
6 3cym_A Uncharacterized protein 99.9 1.4E-24 4.7E-29 225.5 21.9 241 9-300 16-271 (440)
7 2kfn_A Klenow fragment of DNA 99.7 1.3E-16 4.5E-21 171.8 19.7 179 9-221 5-199 (605)
8 3pv8_A DNA polymerase I; DNA p 99.6 1.9E-15 6.5E-20 161.9 14.7 155 33-222 30-187 (592)
9 1x9m_A DNA polymerase; DNA plo 99.4 1E-13 3.4E-18 151.6 7.8 154 34-221 1-188 (698)
10 4dfk_A DNA polymerase I, therm 98.9 8.9E-10 3E-14 116.9 8.1 123 33-221 11-134 (540)
11 3v9w_A Ribonuclease T; DEDD nu 98.3 5.7E-06 1.9E-10 78.0 14.1 170 19-222 24-227 (235)
12 1bgx_T TAQ DNA polymerase; DNA 97.9 1.6E-05 5.5E-10 88.3 8.9 120 33-220 305-425 (832)
13 2p1j_A POLIII, DNA polymerase 97.6 0.0005 1.7E-08 62.3 12.2 100 91-220 81-180 (186)
14 1wlj_A Interferon stimulated g 97.3 0.0013 4.6E-08 59.7 11.1 100 91-221 72-174 (189)
15 2f96_A Ribonuclease T; RNAse, 97.0 0.01 3.6E-07 55.0 13.8 92 104-222 126-219 (224)
16 2gui_A DNA polymerase III epsi 96.9 0.019 6.5E-07 51.9 14.6 99 91-214 84-183 (194)
17 1y97_A Three prime repair exon 95.9 0.035 1.2E-06 51.7 10.0 110 91-218 98-212 (238)
18 2qxf_A Exodeoxyribonuclease I; 95.6 0.2 6.8E-06 52.2 15.1 104 92-214 84-199 (482)
19 3mxm_B Three prime repair exon 95.6 0.043 1.5E-06 51.8 9.0 110 91-217 103-216 (242)
20 3u3y_B Three prime repair exon 95.3 0.075 2.6E-06 52.3 10.1 110 91-217 103-216 (314)
21 1w0h_A 3'-5' exonuclease ERI1; 94.1 0.14 4.8E-06 46.3 8.2 98 92-214 88-193 (204)
22 2igi_A Oligoribonuclease; RNAs 92.3 1.6 5.5E-05 38.4 12.0 32 92-123 84-119 (180)
23 3cg7_A CRN-4, cell death-relat 91.8 1 3.4E-05 43.9 10.9 102 92-214 98-207 (308)
24 1zbh_A 3'-5' exonuclease ERI1; 90.1 1.3 4.5E-05 42.8 9.9 98 92-214 156-261 (299)
25 1zbu_A ERI-1 homolog, 3'-5' ex 89.2 1.6 5.5E-05 43.3 9.9 98 92-214 206-311 (349)
26 1qht_A Protein (DNA polymerase 89.1 7.3 0.00025 42.7 15.9 115 91-214 189-328 (775)
27 1s5j_A DNA polymerase I; repli 83.9 22 0.00074 39.4 16.2 160 31-210 189-387 (847)
28 3i8o_A KH domain-containing pr 82.9 2.3 8E-05 36.8 6.3 59 369-427 60-133 (142)
29 4gmj_B CCR4-NOT transcription 81.1 39 0.0013 32.4 14.9 92 100-218 146-247 (285)
30 3iay_A DNA polymerase delta ca 79.8 14 0.00047 41.4 12.7 114 91-213 315-466 (919)
31 2gbz_A Oligoribonuclease; ORN, 77.0 3.9 0.00013 36.6 6.1 32 92-123 88-123 (194)
32 2xri_A ERI1 exoribonuclease 3; 73.9 5.7 0.00019 36.3 6.5 97 91-213 106-211 (224)
33 3ix7_A Uncharacterized protein 73.5 2.4 8.2E-05 36.3 3.4 38 388-425 86-123 (134)
34 1o4w_A PIN (PILT N-terminus) d 73.4 2.1 7.2E-05 36.6 3.1 42 386-428 98-139 (147)
35 3k59_A POL II, DNA polymerase 70.5 22 0.00075 39.0 11.1 112 91-212 206-349 (786)
36 1noy_A Protein (DNA polymerase 65.6 8.5 0.00029 38.4 6.1 113 91-212 193-335 (388)
37 3dbo_B Uncharacterized protein 63.9 4.9 0.00017 34.6 3.5 51 366-422 98-148 (150)
38 3tqo_A Cysteinyl-tRNA syntheta 62.6 3.9 0.00013 42.1 3.0 34 368-401 53-86 (462)
39 1li5_A Cysrs, cysteinyl-tRNA s 52.0 7 0.00024 40.1 2.7 34 368-401 50-83 (461)
40 3c8z_A Cysteinyl-tRNA syntheta 50.0 5.8 0.0002 40.0 1.7 34 368-401 67-100 (414)
41 3h87_A Putative uncharacterize 49.9 11 0.00038 32.6 3.4 55 366-424 95-149 (156)
42 2py5_A DNA polymerase; protein 46.0 1.8E+02 0.0063 30.4 12.6 48 161-212 127-180 (575)
43 3sp1_A Cysteinyl-tRNA syntheta 42.9 6.4 0.00022 41.0 0.7 34 368-401 70-113 (501)
44 3u1f_A Methionyl-tRNA syntheta 40.3 11 0.00037 39.1 2.1 32 368-401 38-71 (542)
45 3tnd_A TRNA(FMet)-specific end 40.0 25 0.00087 28.5 4.0 40 368-413 83-123 (132)
46 3zvk_A VAPC2, toxin of toxin-a 39.9 16 0.00056 29.8 2.8 41 367-413 83-124 (134)
47 2a1r_A Poly(A)-specific ribonu 37.2 74 0.0025 32.2 7.6 111 97-218 275-399 (430)
48 3tr8_A Oligoribonuclease; tran 32.8 95 0.0033 27.4 6.8 33 91-123 87-123 (186)
49 3kfl_A Methionyl-tRNA syntheta 32.8 16 0.00054 38.4 1.8 34 368-401 55-88 (564)
50 2x1l_A Methionyl-tRNA syntheta 32.3 16 0.00056 37.6 1.8 33 368-400 41-73 (524)
51 2yxb_A Coenzyme B12-dependent 32.0 34 0.0012 29.6 3.6 32 368-400 38-69 (161)
52 4dlp_A Aminoacyl-tRNA syntheta 31.1 18 0.0006 37.6 1.8 33 368-400 54-86 (536)
53 1ccw_A Protein (glutamate muta 30.3 17 0.00059 30.5 1.3 33 368-401 23-55 (137)
54 2d5b_A Methionyl-tRNA syntheta 29.7 17 0.00057 37.3 1.3 33 368-400 32-64 (500)
55 2h1c_A Trafficking protein B; 29.2 38 0.0013 27.2 3.3 41 367-413 88-129 (139)
56 3d45_A Poly(A)-specific ribonu 28.2 71 0.0024 33.0 5.8 108 100-217 272-393 (507)
57 3ezx_A MMCP 1, monomethylamine 28.1 45 0.0015 30.3 3.9 39 365-404 107-149 (215)
58 1rqg_A Methionyl-tRNA syntheta 27.9 20 0.00067 38.9 1.5 33 368-400 32-64 (722)
59 2csx_A Methionyl-tRNA syntheta 26.9 21 0.0007 36.6 1.4 33 368-400 34-66 (497)
60 3ikm_A DNA polymerase subunit 26.3 49 0.0017 37.5 4.3 57 163-219 288-350 (1172)
61 3h99_A Methionyl-tRNA syntheta 26.2 22 0.00076 37.1 1.5 33 368-400 47-79 (560)
62 2fe1_A Conserved hypothetical 23.1 45 0.0015 28.2 2.7 31 387-417 123-153 (156)
63 2lcq_A Putative toxin VAPC6; P 23.1 42 0.0014 29.0 2.5 35 388-422 85-119 (165)
64 1v96_A Hypothetical protein PH 23.0 1.1E+02 0.0036 25.2 5.0 41 367-413 82-123 (149)
65 2v0c_A Aminoacyl-tRNA syntheta 22.7 50 0.0017 36.6 3.6 33 368-400 62-94 (878)
66 1ul1_X Flap endonuclease-1; pr 22.0 67 0.0023 31.8 4.0 50 363-414 135-185 (379)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.96 E-value=3.2e-29 Score=258.88 Aligned_cols=222 Identities=22% Similarity=0.280 Sum_probs=180.1
Q ss_pred CccEEEEcCCChHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC
Q 013817 8 PLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI 87 (436)
Q Consensus 8 ~~~i~~V~t~~~~el~~l~~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l 87 (436)
...|++|++ .+++..+++.+...+.||||+||.+..+ +.+++++||||+. +++|+||+..+
T Consensus 107 ~~~y~~I~t--~e~L~~~l~~L~~~~~vavDtE~~~~~~---~~~~l~lIQLa~~--------------~~~~lidpl~l 167 (428)
T 3saf_A 107 ETPCHFISS--LDELVELNEKLLNCQEFAVNLEHHSYRS---FLGLTCLMQISTR--------------TEDFIIDTLEL 167 (428)
T ss_dssp GSCEEEECS--HHHHHHHHHHHTTCSEEEEEEEEECTTC---SSCEEEEEEEECS--------------SCEEEEETTTT
T ss_pred CCCcEEECC--HHHHHHHHHHHhcCCeEEEEEEecCCCC---CCCeEEEEEEEeC--------------CcEEEEEeccc
Confidence 356889999 8999999999998999999999988764 6789999999985 57899998876
Q ss_pred CchhHHHHHHHhhCCCCceEEEEehHHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHHH
Q 013817 88 PLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANI 167 (436)
Q Consensus 88 ~~~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~L 167 (436)
. ..+..|+++|+|++|.|||||+++|+.+|.+.||+ . +.++|| |++|+|+++++ .+||+.|
T Consensus 168 ~--~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi---~-----~~~~fD-T~lAa~lL~~~--------~~gL~~L 228 (428)
T 3saf_A 168 R--SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGL---Y-----VVNMFD-THQAARLLNLG--------RHSLDHL 228 (428)
T ss_dssp G--GGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC---C-----CSSEEE-HHHHHHHTTCS--------CCSHHHH
T ss_pred h--hhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCC---C-----cCceee-chhHHHHhCCC--------CCCHHHH
Confidence 4 24578999999999999999999999999866776 2 468999 99999999874 5899999
Q ss_pred HHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cchhhhcccC---CCcC
Q 013817 168 CKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS--------CSSISELDSS---NLDL 236 (436)
Q Consensus 168 v~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l--------~~~~~~~~~~---~~~~ 236 (436)
++++||++++|+.+++||+.|||+++|+.|||.||+++++||+.|.++|.+.|.. .+|++.+... .+.+
T Consensus 229 v~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (428)
T 3saf_A 229 LKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIF 308 (428)
T ss_dssp HHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999872 2233333221 1122
Q ss_pred CCCCCccCCCCCCCcccccchhHHHHHHHhhhcc
Q 013817 237 GLKGILEKPDIGNKTVRFKLCEALDIIRATSYYS 270 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (436)
....|+..+....+ ...+++++++++|..-.
T Consensus 309 ~~~~~~~~~~~~~~---~l~~~~l~l~~~L~~wR 339 (428)
T 3saf_A 309 TDESYLELYRKQKK---HLNTQQLTAFQLLFAWR 339 (428)
T ss_dssp CTTGGGHHHHTTCC---CCCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHhcc---CCChHHHHHHHHHHHHH
Confidence 33334333333222 45689999999994433
No 2
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.95 E-value=2.4e-27 Score=241.69 Aligned_cols=239 Identities=22% Similarity=0.283 Sum_probs=192.0
Q ss_pred cEEEEcCCChHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCc
Q 013817 10 KIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPL 89 (436)
Q Consensus 10 ~i~~V~t~~~~el~~l~~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~ 89 (436)
+|++|++ .+++..+++.+...++||||+||.+... +.++++++|+++. +.+|++|+..+.
T Consensus 2 ~~~~I~t--~~~l~~~~~~l~~~~~va~D~E~~~~~~---~~~~l~liqla~~--------------~~~~lid~~~l~- 61 (375)
T 1yt3_A 2 NYQMITT--DDALASLCEAVRAFPAIALDTEFVRTRT---YYPQLGLIQLFDG--------------EHLALIDPLGIT- 61 (375)
T ss_dssp CCEEECS--HHHHHHHHHHHTTSSEEEEEEEEECCSC---SSCEEEEEEEECS--------------SCEEEECGGGCS-
T ss_pred CeEEeCC--HHHHHHHHHHHcCCCeEEEEeeecCCCc---CCCceEEEEEecC--------------CcEEEEeCCCCC-
Confidence 4678888 7889999999888899999999998763 5689999999984 468999965442
Q ss_pred hhHHHHHHHhhCCCCceEEEEehHHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHHH
Q 013817 90 PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (436)
Q Consensus 90 ~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~ 169 (436)
.+..|+++|++++|.|||||+++|+.+|.+.||+ . +.++|| |++|+|++++. .++||+.|++
T Consensus 62 --~~~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi---~-----~~~~fD-t~lAa~lL~~~-------~~~~L~~L~~ 123 (375)
T 1yt3_A 62 --DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGE---L-----PQPLID-TQILAAFCGRP-------MSWGFASMVE 123 (375)
T ss_dssp --CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSS---C-----CSSEEE-HHHHHHHTTCC-------TTCCHHHHHH
T ss_pred --ChHHHHHHHcCCCceEEEeeHHHHHHHHHHHcCC---C-----CCcEEE-cHHHHHHcCCC-------CChhHHHHHH
Confidence 3567999999999999999999999999876666 2 358999 99999999874 4799999999
Q ss_pred HHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cchhhhcccCCC--cCCCCCCccC
Q 013817 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS---CSSISELDSSNL--DLGLKGILEK 244 (436)
Q Consensus 170 ~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l---~~~~~~~~~~~~--~~~~~~~~~~ 244 (436)
+|||..+.|+.+++||+.|||+++|+.|||.||++++.||+.|.++|++.|++ .+||+....... ...-..
T Consensus 124 ~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~~l~~~e~E~pl~~~~~~~~~~~~---- 199 (375)
T 1yt3_A 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDA---- 199 (375)
T ss_dssp HHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCCGGGG----
T ss_pred HHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhcccCCCchHH----
Confidence 99999999999999999999999999999999999999999999999999875 567776543221 111222
Q ss_pred CCCCCCcccccchhHHHHHHHhhh------cccCCCCCcccccccCCCCCCchHHHHHHHhh
Q 013817 245 PDIGNKTVRFKLCEALDIIRATSY------YSQCLPEGVVSRVSYLNTMPMDESLVKIVRKY 300 (436)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (436)
|...++.+++ .+++++++++|.. ..+++|+.. +-.|+.+..|+++.
T Consensus 200 ~~~~~~~~~l-~~~~~~~~~~L~~wR~~~A~~~d~p~~~---------V~~d~~L~~iA~~~ 251 (375)
T 1yt3_A 200 WRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNF---------VVREEHLWSVARYM 251 (375)
T ss_dssp GGGSTTGGGS-CHHHHHHHHHHHHHHHHHHHHHTCCGGG---------TSCHHHHHHHHHHC
T ss_pred HHhccCcccC-CHHHHHHHHHHHHHHHHHHHHhCCCcce---------EECHHHHHHHHHHC
Confidence 3344555666 6899999999855 334445443 34578888888765
No 3
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.95 E-value=7e-27 Score=240.81 Aligned_cols=241 Identities=20% Similarity=0.221 Sum_probs=185.6
Q ss_pred EEEEcCCChHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCch
Q 013817 11 IHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLP 90 (436)
Q Consensus 11 i~~V~t~~~~el~~l~~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~ 90 (436)
+.+|++ .+++..+++.|...++||||+||.+... +.+++++||||+. +.+|++|+..+.
T Consensus 87 ~~~I~t--~~~L~~~~~~L~~~~~vavDtE~~~~~~---~~~~l~liQla~~--------------~~~ylid~l~l~-- 145 (410)
T 2hbj_A 87 PIWVDT--STELESMLEDLKNTKEIAVDLEHHDYRS---YYGIVCLMQISTR--------------ERDYLVDTLKLR-- 145 (410)
T ss_dssp CEEECS--HHHHHHHHHHHTTCSEEEEEEEEECSSS---SSCEEEEEEEECS--------------SCEEEEETTTTT--
T ss_pred cEEeCC--HHHHHHHHHHHhhCCceEEEeeecCCcC---CCCcEEEEEEEEC--------------CcEEEEechhhh--
Confidence 778888 7889999999888889999999987542 5689999999984 478999975542
Q ss_pred hHHHHHHHhhCCCCceEEEEehHHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHHHH
Q 013817 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (436)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~ 170 (436)
..+..|+++|+|++|.|||||+++|+.+|.+.||+ . +.++|| |++|+|+++++ ++||+.|+++
T Consensus 146 ~~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi---~-----~~~~fD-t~lAa~LL~~~--------~~~L~~L~~~ 208 (410)
T 2hbj_A 146 ENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGL---Y-----VVGLFD-TYHASKAIGLP--------RHSLAYLLEN 208 (410)
T ss_dssp TTGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC---C-----CSSEEE-HHHHHHHHTCS--------CCSHHHHHHH
T ss_pred hhHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCC---C-----cCCEEE-cHHHHHHhCCC--------ccCHHHHHHH
Confidence 23567899999999999999999999999887776 2 466999 99999999974 6899999999
Q ss_pred HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cchhhhcccC--------CCcCC--
Q 013817 171 LLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS---CSSISELDSS--------NLDLG-- 237 (436)
Q Consensus 171 ~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l---~~~~~~~~~~--------~~~~~-- 237 (436)
|||..++|+.+++||+.|||+++|+.|||.||++++.||+.|.++|++.|++ .+|+..+... +....
T Consensus 209 ~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 288 (410)
T 2hbj_A 209 FANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSE 288 (410)
T ss_dssp HSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCEECCGGGCCSSCCSS
T ss_pred HcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhhhccccccccccc
Confidence 9999999999999999999999999999999999999999999999999986 5555554321 11000
Q ss_pred ---CCCCccCCCCCCCcccccchhHHHHHHHhhh------cccCCCCCcccccccCCCCCCchHHHHHHHh
Q 013817 238 ---LKGILEKPDIGNKTVRFKLCEALDIIRATSY------YSQCLPEGVVSRVSYLNTMPMDESLVKIVRK 299 (436)
Q Consensus 238 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (436)
.......|....+.++++ +++++++++|.. ..+++|+..| --|..|..|+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~~L~~wR~~~Ar~~d~p~~~V---------~~D~~L~~iA~~ 349 (410)
T 2hbj_A 289 VYSPIEKESPWKILMYQYNIP-PEREVLVRELYQWRDLIARRDDESPRFV---------MPNQLLAALVAY 349 (410)
T ss_dssp EECCCCSSSSSSSCSSCSCCC-STTHHHHHHHHHHHHHHHHHHTCCHHHH---------CCHHHHHHHHHH
T ss_pred cccCCchhHHHHHHhhhcCCC-HHHHHHHHHHHHHHHHHHHHcCCCCcEE---------ECHHHHHHHHHh
Confidence 001112344455555554 467788888844 3445555533 125566666653
No 4
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.95 E-value=4.1e-27 Score=220.52 Aligned_cols=184 Identities=30% Similarity=0.405 Sum_probs=149.0
Q ss_pred CCCccEEEEcCCChHHHH----HHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEE
Q 013817 6 RKPLKIHLVTSTESPEFT----HLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFL 81 (436)
Q Consensus 6 ~~~~~i~~V~t~~~~el~----~l~~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~l 81 (436)
..+.+|++|++ ++++. .++..+...++||||+||.+.+.. .+.++++++|+|+. ++.+|+
T Consensus 12 ~f~g~i~~i~~--~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~-~~~~~~~~iqla~~-------------~~~~~~ 75 (208)
T 2e6m_A 12 EFPGSIVYSYE--ASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKP-GKRSRVAVIQLCVS-------------ESKCYL 75 (208)
T ss_dssp CCCSEEEEECS--HHHHHHHHHHHHHHCCTTCEEEEEEECCC---C-CSCCCCCEEEEECS-------------SSEEEE
T ss_pred ccCCcEEEEeC--HHHHHHHHHHHHHHhccCCEEEEEeecCCCCCC-CCCCCeEEEEEecC-------------CCeEEE
Confidence 34567899998 88888 555677777889999999886321 14578999999984 368999
Q ss_pred EeCCCCCchhHHHHHHHhhCCCCceEEEEehHHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCc
Q 013817 82 LDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKET 161 (436)
Q Consensus 82 iD~~~l~~~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~ 161 (436)
||+..+. .+...|+++|+++.+.|||||+++|+..|.+.||+ . +.++||+|++|+|++++. ..
T Consensus 76 i~~~~~~--~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi---~-----~~~~fDlt~lAayll~~~-------~~ 138 (208)
T 2e6m_A 76 FHISSMS--VFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDV---K-----LESFVELTDVANEKLKCA-------ET 138 (208)
T ss_dssp ECGGGCS--SCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCC---C-----CCSEEEHHHHHHHHTTCC-------CC
T ss_pred EECcccc--cchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCC---C-----CCCEEEHHHHHHHHccCC-------CC
Confidence 9876543 24568999999999999999999999999987776 2 456999999999999863 47
Q ss_pred ccHHHHHHHHcCCcccc--cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013817 162 KSLANICKELLDISLSK--ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (436)
Q Consensus 162 ~gL~~Lv~~~Lg~~l~K--~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l 222 (436)
+||++|++++||..+.| ..+++||..|||+++|+.|||.||+++++||+.|.++|++.|++
T Consensus 139 ~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~ 201 (208)
T 2e6m_A 139 WSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVF 201 (208)
T ss_dssp CCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred hhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 99999999999999855 57899999999999999999999999999999999999888764
No 5
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.95 E-value=3.6e-27 Score=221.52 Aligned_cols=166 Identities=15% Similarity=0.227 Sum_probs=132.3
Q ss_pred HHHHHHHHHh------cCCCeEEEEEeEeCCCCC---CCCC--CceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCC
Q 013817 20 PEFTHLARAL------SQSSLVGLDAEWKPQRSH---QSNF--PRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIP 88 (436)
Q Consensus 20 ~el~~l~~~L------~~~~~Va~D~E~~~~~~~---~~~~--~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~ 88 (436)
+++..+++.+ .+..+||||+||.+.+.. .++. +++||||||+. +.++||++.. .
T Consensus 28 ~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~--------------~~~~l~~l~~-~ 92 (206)
T 1vk0_A 28 TDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTR--------------NLCLFLRLPK-P 92 (206)
T ss_dssp CCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECS--------------SEEEEEECCS-S
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecC--------------CCeEEEeccc-c
Confidence 4555555554 567899999999976510 0133 48999999984 6799999831 1
Q ss_pred chhHHHHHHHhhCCCCceEEEEehHHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHH
Q 013817 89 LPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANIC 168 (436)
Q Consensus 89 ~~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv 168 (436)
....+..|.++|+|++|+||||++++|+..|.+.||+ .+.++||++.+|+.+++... ...+||+.|+
T Consensus 93 ~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~--------~~~~~~Dl~~la~~~lg~~~-----~~~~gL~~Lv 159 (206)
T 1vk0_A 93 FHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGL--------VIRNAINVGKLAAEARGTLV-----LEFLGTRELA 159 (206)
T ss_dssp CCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCC--------CCSSEEEHHHHHHHHHTCGG-----GGGCCHHHHH
T ss_pred CCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCC--------CcCCeeeHHHHHHHHcCCCC-----CCCccHHHHH
Confidence 1223456889999999999999999999999988876 26899997779877766410 1478999999
Q ss_pred HHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 169 KELLDISL-SKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (436)
Q Consensus 169 ~~~Lg~~l-~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~ 214 (436)
+++||+++ +|..++|||++ ||+++|+.|||.||+++++||+.|.+
T Consensus 160 ~~~lg~~lK~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 160 HRVLWSDLGQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHCCCCHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcCCCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999 55779999999 99999999999999999999999863
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.93 E-value=1.4e-24 Score=225.54 Aligned_cols=241 Identities=21% Similarity=0.249 Sum_probs=187.2
Q ss_pred ccEEEEcCCChHHHHHHHHHhcCC-CeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC
Q 013817 9 LKIHLVTSTESPEFTHLARALSQS-SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI 87 (436)
Q Consensus 9 ~~i~~V~t~~~~el~~l~~~L~~~-~~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l 87 (436)
..+.+|++ .+++..+++.+... +.||||+||.+... +.+.+++|||++. ++.+|+||+..+
T Consensus 16 ~~~~~I~t--~e~L~~~~~~L~~~~~~vavDtE~~~~~~---~~~~l~liQla~~-------------~~~~~lid~l~~ 77 (440)
T 3cym_A 16 GVPNVIDT--LPAFRDYCSELASSHGSLAADAERASGFR---YGHEDWLVQFKRD-------------GAGIGLLDPQAL 77 (440)
T ss_dssp CCCCEECS--HHHHHHHHHHHHSCEEEEEEEEEECTTTS---SSCCEEEEEEEEE-------------TTEEEEECHHHH
T ss_pred CCCEeeCC--HHHHHHHHHHHHhcCCeEEEEeeecCCCC---CCCCEEEEEEEEC-------------CCcEEEEEcCCc
Confidence 33467887 78899999988776 88999999987653 5689999999985 466888886321
Q ss_pred Cc-hhHHHHHHHhhCCCCceEEEEehHHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHH
Q 013817 88 PL-PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLAN 166 (436)
Q Consensus 88 ~~-~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~ 166 (436)
.. ...+..|+++|+|+ .||+|++++|+.+|. .+|+ . +.++|| |++|+|++++. ++||+.
T Consensus 78 ~~~~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L~-~~gi---~-----~~~~fD-t~lAa~lL~~~--------~~gL~~ 137 (440)
T 3cym_A 78 AAAGADWNDFNRAVGDA--VWILHDSLQDLPGFD-ELGM---E-----PQRLFD-TEIAARLLGLK--------RFGLAA 137 (440)
T ss_dssp HHTTCCHHHHHHHHTTC--EEEESSHHHHHHHHH-HHTC---C-----CCEEEE-HHHHHHHTTCS--------SCSHHH
T ss_pred cccccCHHHHHHHHCCC--CEEEEcCHHHHHHHH-HcCC---c-----CCceeh-HHHHHHHhCCC--------CCCHHH
Confidence 00 01256899999997 699999999999997 5665 2 458999 89999999863 799999
Q ss_pred HHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cchhhhcccCCC---cCCCCC
Q 013817 167 ICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS---CSSISELDSSNL---DLGLKG 240 (436)
Q Consensus 167 Lv~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l---~~~~~~~~~~~~---~~~~~~ 240 (436)
|++.|||..+.|+.++++|..|||+++|+.|||.||++++.||+.|..+|.+.|.+ .+||+.+..... .+....
T Consensus 138 L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~~~l~~~~~~~~~~~~~~ 217 (440)
T 3cym_A 138 VTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGPRKEHLIP 217 (440)
T ss_dssp HHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSSCCCCSSG
T ss_pred HHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhccccccCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999987 788988855332 122223
Q ss_pred CccCCCCCCCcccc-cchhHHHHHHHhhh------cccCCCCCcccccccCCCCCCchHHHHHHHhh
Q 013817 241 ILEKPDIGNKTVRF-KLCEALDIIRATSY------YSQCLPEGVVSRVSYLNTMPMDESLVKIVRKY 300 (436)
Q Consensus 241 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (436)
|+ ...+..++ +.+++++++++|.. ..+++|+..| -.|..|..|+++.
T Consensus 218 ~~----~~~~~~~l~~~~~~l~~~~~L~~wR~~~Ar~~d~p~~~V---------~~d~~L~~iA~~~ 271 (440)
T 3cym_A 218 WM----HVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLL---------LSDSSIIEVAKRK 271 (440)
T ss_dssp GG----CCTTGGGGTTCHHHHHHHHHHHHHHHHHHHHTTSCHHHH---------SCHHHHHHHHHHC
T ss_pred HH----HhccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEE---------ECHHHHHHHHHHC
Confidence 32 22333333 47899999999965 4556666643 2367777777754
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.72 E-value=1.3e-16 Score=171.83 Aligned_cols=179 Identities=18% Similarity=0.192 Sum_probs=142.8
Q ss_pred ccEEEEcCCChHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCC--
Q 013817 9 LKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSS-- 86 (436)
Q Consensus 9 ~~i~~V~t~~~~el~~l~~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~-- 86 (436)
..|.+|++ .+++..+++.+...+.|+||+|+++..+ +.++++.+|++.. .+.+++|++..
T Consensus 5 ~~y~~I~~--~~~l~~~~~~l~~~~~va~DtEttgl~~---~~~~iv~I~~~~~-------------~g~~~yip~~~~~ 66 (605)
T 2kfn_A 5 DNYVTILD--EETLKAWIAKLEKAPVFAFDTETDSLDN---ISANLVGLSFAIE-------------PGVAAYIPVAHDY 66 (605)
T ss_dssp SSSEECCS--HHHHHHHHHHHHTSSSEEEEEEESCSCT---TTCCEEEEEEEEE-------------TTEEEEEECCCCS
T ss_pred hheEEecC--HHHHHHHHHhcccCCeEEEEEecCCCCc---ccCceEEEEEEEc-------------CCcEEEEeccccc
Confidence 44678887 7889999998877788999999998864 4578888888864 35556664322
Q ss_pred ------CCchhHHHHHHHhhCCCCceEEEEehHHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcC
Q 013817 87 ------IPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKE 160 (436)
Q Consensus 87 ------l~~~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~ 160 (436)
+...+++..|+++|+++++.||+||+++|+.+|.+ +|+ . ....+|| |++++|+++++ ..
T Consensus 67 ~~~~~~l~~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~-~Gi---~----l~~~~~D-T~laayLL~p~------~~ 131 (605)
T 2kfn_A 67 LDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILAN-YGI---E----LRGIAFD-TMLESYILNSV------AG 131 (605)
T ss_dssp TTCCCCCCHHHHHHHHHHHHTCTTSCEEESSHHHHHHHHHT-TTC---C----CCCEEEE-HHHHHHHHCTT------SS
T ss_pred cccccccCHHHHHHHHHHHHcCCCCeEEEECcHHHHHHHHH-CCC---C----CCCcccc-HHHHHHHhCCC------CC
Confidence 22234677899999999999999999999999987 454 2 1245899 99999999986 34
Q ss_pred cccHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Q 013817 161 TKSLANICKELLDISLS-------KELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ-KGN 221 (436)
Q Consensus 161 ~~gL~~Lv~~~Lg~~l~-------K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~-~g~ 221 (436)
+++|++|+++|||.... |+.+.++|..+|+ +++..||+.||+++++||..|.++|++ .|.
T Consensus 132 ~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l 199 (605)
T 2kfn_A 132 RHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKGP 199 (605)
T ss_dssp CCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 79999999999988753 5556668988888 679999999999999999999999877 544
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.63 E-value=1.9e-15 Score=161.93 Aligned_cols=155 Identities=10% Similarity=-0.030 Sum_probs=128.7
Q ss_pred CeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhHHHHHHHhhCCCCceEEEEeh
Q 013817 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (436)
Q Consensus 33 ~~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lLe~~~i~KVgh~~ 112 (436)
...++|+|.....+ +.+.++.+|++.. +++|+|++.. ......|+++|+|+++.||+||+
T Consensus 30 ~~~aldtE~~~~~~---~~a~Lvgisla~~--------------~~a~yIp~~~---~~~l~~Lk~lLed~~i~KV~hn~ 89 (592)
T 3pv8_A 30 DKAALVVEVVEENY---HDAPIVGIAVVNE--------------HGRFFLRPET---ALADPQFVAWLGDETKKKSMFDS 89 (592)
T ss_dssp SEEEEEEECCSSSC---TTCCCCEEEEEET--------------TEEEEECHHH---HTTCHHHHHHHTCTTSEEEESSH
T ss_pred cCcEEEEEEcCCcc---CcccEEEEEEEcC--------------CceEEEccch---hhHHHHHHHHHhCCCCeEEEech
Confidence 56799999987775 5678899999984 4678886532 12457899999999999999999
Q ss_pred HHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHHHHHcCCcccccccccCCC---CCC
Q 013817 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWS---NRP 189 (436)
Q Consensus 113 k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~l~K~~q~sdW~---~RP 189 (436)
|+|+..|.+ +|+ . ....+|| |+||+||++++ ..+++|++|+++|||..+.+.++..+|. ..|
T Consensus 90 K~Dl~vL~~-~Gi---~----l~g~~fD-TmLAAYLL~p~------~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~ 154 (592)
T 3pv8_A 90 KRAAVALKW-KGI---E----LCGVSFD-LLLAAYLLDPA------QGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVP 154 (592)
T ss_dssp HHHHHHHHH-TTC---C----CCCEEEE-HHHHHHHHCGG------GCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCC
T ss_pred HHHHHHHHH-cCC---C----CCCccch-HHHHHHHcCCC------CCCCCHHHHHHHHcCCCCchHHHhcCccccccCc
Confidence 999999987 455 2 2357999 99999999986 3479999999999999998877777775 345
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013817 190 LTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (436)
Q Consensus 190 L~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l 222 (436)
..+.+..|||.||+++++||+.|.++|++.+.+
T Consensus 155 ~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l~ 187 (592)
T 3pv8_A 155 DEPVLAEHLVRKAAAIWELERPFLDELRRNEQD 187 (592)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 668899999999999999999999999998765
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.43 E-value=1e-13 Score=151.62 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=121.4
Q ss_pred eEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhHHHHHHHhhCCCCceEEEEeh-
Q 013817 34 LVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF- 112 (436)
Q Consensus 34 ~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lLe~~~i~KVgh~~- 112 (436)
+|+||+|+++..+ +..+++++|++... .+.++++|+..+ ...++.|+++|+ +++.||+||+
T Consensus 1 ~vv~D~ETtGl~~---~~d~i~~iqi~~~~------------~~~~~~~~p~~i--~~~l~~L~~~l~-~~~~kV~HNa~ 62 (698)
T 1x9m_A 1 MIVSDIEANALLE---SVTKFHCGVIYDYS------------TAEYVSYRPSDF--GAYLDALEAEVA-RGGLIVFHNGH 62 (698)
T ss_dssp CEEEEEEESSCGG---GCCCEEEEEEEETT------------TTEEEEECGGGH--HHHHHHHHHHHH-TTCCEEESSTT
T ss_pred CEEEEcCCCCcCC---CCCEEEEEEEEecC------------CCcEEEEChHHH--HHHHHHHHHHHh-cCCeEEEcCCh
Confidence 4899999998875 56799999998741 367888886533 246788999999 8999999999
Q ss_pred HHhHHHHHhhc------ccCCCccCccCC-CceeeHHHHHHHhhcccCCCCCCcCcccHHHHHHHHc-------CCcc--
Q 013817 113 KQDLIYLSSTF------CSQGCDIGFDRV-EPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELL-------DISL-- 176 (436)
Q Consensus 113 k~Dl~~L~~~~------gi~g~~~~~~~~-~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~L-------g~~l-- 176 (436)
++|+.+|.+.+ |+ . .. ..+|| |++++|++++. ...++|++|++++| |..+
T Consensus 63 kfD~~~L~~~~~~~~~~Gi---~----l~~~~~~D-TmlaayLL~p~------~~~~~L~~La~~~L~~sL~~~g~~lg~ 128 (698)
T 1x9m_A 63 KYDVPALTKLAKLQLNREF---H----LPRENCID-TLVLSRLIHSN------LKDTDMGLLRSGKLPGALEAWGYRLGE 128 (698)
T ss_dssp TTHHHHHHHHHHHHHCCCC---C----CCGGGEEE-HHHHHHHHTTT------SCCCTTTTSCGGGSCSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccCCc---c----CCCCcchh-HHHHHHHhCCC------CCCCCHHHHHHHHcccchhhhcccccc
Confidence 99999998753 54 1 13 57999 99999999986 34789999999998 4333
Q ss_pred ---c-----------cccc-c--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013817 177 ---S-----------KELQ-C--SDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221 (436)
Q Consensus 177 ---~-----------K~~q-~--sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g~ 221 (436)
+ |+.+ . ++|.. +++++..||+.||.++++||+.|.++|++.+.
T Consensus 129 ~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 129 MKGEYKDDFKRMLEEQGEEYVDGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCTTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred cccCHHHHhCcccccccccccccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 2221 1 27874 66899999999999999999999998887765
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.95 E-value=8.9e-10 Score=116.86 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=98.9
Q ss_pred CeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhHHHHHHHhhCCCCceEEEEeh
Q 013817 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (436)
Q Consensus 33 ~~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lLe~~~i~KVgh~~ 112 (436)
+.+++|+|...... +...++++|++.. +.+|+++ ..+..|+++|++ +.||+||+
T Consensus 11 ~~valDtE~~~~~~---~~a~Lvgi~la~~--------------~~a~~i~-------~~l~~l~~~l~d--~~kV~hn~ 64 (540)
T 4dfk_A 11 EGAFVGFVLSRKEP---MWADLLALAAARG--------------GRVHRAP-------EPYKALRDLKEA--RGLLAKDL 64 (540)
T ss_dssp TTCEEEEEESSSCT---TTCCEEEEEEEET--------------TEEEECS-------SHHHHHTTCSSB--CSTTHHHH
T ss_pred CceEEEEEecCCcc---CcccEEEEEEEcC--------------CEEEEeh-------hhHHHHHHHHcC--CCEEEecc
Confidence 44899999988775 5678899999963 5778765 256789999998 78899999
Q ss_pred HHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHHHHHcCCcccccccccCCCCCCCCH
Q 013817 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTE 192 (436)
Q Consensus 113 k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~l~K~~q~sdW~~RPL~~ 192 (436)
|+|+. + +|+ . +..+|| |++++||++++ +++|++|+++|++. |..
T Consensus 65 K~Dl~---~-~Gi---~-----~~~~fD-T~laAyLL~p~--------~~~L~~La~~yl~~----------~gk----- 108 (540)
T 4dfk_A 65 SVLAL---R-EGL---G-----LPPGDD-PMLLAYLLDPS--------NTTPEGVARRYGGE----------WTE----- 108 (540)
T ss_dssp HHHHH---H-TTC---C-----CCBCCC-HHHHHHHHCTT--------CCCHHHHHHHHTSC----------CCS-----
T ss_pred HHHHH---H-cCC---C-----CCccee-HHHHHHHhCCC--------CCCHHHHHHHHhhh----------hcc-----
Confidence 99999 3 454 2 237899 99999999984 68999999999986 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Q 013817 193 EQKNYAAIDAHCLIEIFNIFQVKV-AQKGN 221 (436)
Q Consensus 193 ~ql~YAA~DA~~Ll~L~~~L~~~L-~~~g~ 221 (436)
+|+.||.++++||..|.++| ++.+.
T Consensus 109 ----~a~~DA~~t~~L~~~L~~~L~~~~~~ 134 (540)
T 4dfk_A 109 ----EAGERAALSERLFANLWGRLEGEERL 134 (540)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----chHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 36799999999999999999 54443
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.35 E-value=5.7e-06 Score=78.05 Aligned_cols=170 Identities=13% Similarity=0.088 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeEeCCCCCCCCCCceeEEEEeccCCC-C-CCCCCCCCCCCEEEEEeCC---C-------
Q 013817 19 SPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGP-R-FNPESDESNASVVFLLDLS---S------- 86 (436)
Q Consensus 19 ~~el~~l~~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~-~-~~~~~~~~~~~~v~liD~~---~------- 86 (436)
.+++..+...+.....++||+|+++..+ . ...+++|+...-. + .|-.. ....-..+|.+. .
T Consensus 24 ~~~~~~l~~~l~~~~~vviD~ETTGl~~---~--~~~IieIgav~~~~~~~g~i~--~~~~f~~~v~P~~~~~i~~~~~~ 96 (235)
T 3v9w_A 24 NAQLTGLCDRFRGFYPVVIDVETAGFNA---K--TDALLEIAAITLKMDEQGWLM--PDTTLHFHVEPFVGANLQPEALA 96 (235)
T ss_dssp -----CHHHHTTTEEEEEEEEEESSSCT---T--TBCEEEEEEEEEEECTTSCEE--EEEEEEEEBCCCTTCBCCHHHHH
T ss_pred cccccCchhcccCCcEEEEEEeCCCCCC---C--CCeEEEEEEEEEEEcCCCccc--ccceEEEEECCCCCCCCCHHHHH
Confidence 4566777788888889999999998764 2 3346666543100 0 00000 000011123331 0
Q ss_pred ---CCc----------hhHHHHHHHhhCC-------CCceEEEEehHHhHHHHHhhcccCCCc--cCccCCCceeeHHHH
Q 013817 87 ---IPL----------PSIWELLKELFVS-------PDILKLGFKFKQDLIYLSSTFCSQGCD--IGFDRVEPYLDITSI 144 (436)
Q Consensus 87 ---l~~----------~~~~~~L~~lLe~-------~~i~KVgh~~k~Dl~~L~~~~gi~g~~--~~~~~~~~v~Dlt~L 144 (436)
+.. .+++..|.+++.+ .+...||||+++|+..|...+...|+. | +. ...++| |+.
T Consensus 97 i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p-~~-~~~~~D-t~~ 173 (235)
T 3v9w_A 97 FNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNP-FH-PFATFD-TAA 173 (235)
T ss_dssp HHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCC-EE-EEEEEE-HHH
T ss_pred HhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCC-CC-CCcEEE-hHH
Confidence 110 1244555555542 457789999999999997654332321 1 00 135789 777
Q ss_pred HHHhhcccCCCCCCcCcccHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013817 145 YNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (436)
Q Consensus 145 a~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l 222 (436)
+++.+.+ .++|..|++.+ |++... ....+|..||.++.+|+..|.+++++.|.+
T Consensus 174 la~~~~p---------~~~L~~l~~~~-gi~~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~~~~ 227 (235)
T 3v9w_A 174 LAGLALG---------QTVLSKACQTA-GMDFDS--------------TQAHSALYDTERTAVLFCEIVNRWKRLGGW 227 (235)
T ss_dssp HHHHHHS---------CCSHHHHHHHH-TCCCCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHhC---------CCCHHHHHHHc-CCCCCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 7777764 36899999876 554321 123569999999999999999999988765
No 12
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=97.94 E-value=1.6e-05 Score=88.27 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=88.4
Q ss_pred CeEEEEEeEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhHHHHHHHhhCCCCceEEEEeh
Q 013817 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (436)
Q Consensus 33 ~~Va~D~E~~~~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l~~~~~~~~L~~lLe~~~i~KVgh~~ 112 (436)
+.+++|+|..+ + ....+| +++|.. ++.++++++ . + ..|+++|+++.+ |+
T Consensus 305 ~~va~d~et~~--~---~~~~l~-vg~a~~-------------~g~a~yvp~-~----~--~~Lk~lLed~~i-----n~ 353 (832)
T 1bgx_T 305 AFVGFVLSRKE--P---MWADLL-ALAAAR-------------GGRVHRAPE-P----Y--KALRDLKEARGL-----LA 353 (832)
T ss_dssp CCBEEECSSSC--T---TTCCCC-EEECBS-------------SSEEECCSC-H----H--HHHHHCSSBCBT-----TH
T ss_pred ceEEEEEecCC--c---ccCcee-EEEEEc-------------CCCEEEEEC-C----H--HHHHHHHhCCCC-----Ch
Confidence 45788888655 2 123433 566664 366777644 1 1 579999999987 99
Q ss_pred HHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHHHHHcCCcccccccccCCCCCCCCH
Q 013817 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTE 192 (436)
Q Consensus 113 k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~l~K~~q~sdW~~RPL~~ 192 (436)
|+|++.|.+ +|+ . +..+|| |+|++||+++. .++|++|+++| |. +|. +
T Consensus 354 K~d~~~L~~-~Gi---~-----~~~~~D-t~laayLl~p~--------~~~l~~l~~~~-gk---------~~~-----~ 400 (832)
T 1bgx_T 354 KDLSVLALR-EGL---G-----LPPGDD-PMLLAYLLDPS--------NTTPEGVARRY-GG---------EWT-----E 400 (832)
T ss_dssp HHHHHHHHH-HTC---C-----CCBCCC-HHHHHHHHCTT--------CCSTTHHHHHH-SC---------CCC-----S
T ss_pred HHHHHHHHH-cCC---c-----cCcccC-HHHHHHHcCCC--------CCCHHHHHHHh-CC---------Cch-----H
Confidence 999999987 455 2 237799 99999999973 68999999999 32 232 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcC
Q 013817 193 EQKNYAAIDAHCLIEIFNIFQVKVA-QKG 220 (436)
Q Consensus 193 ~ql~YAA~DA~~Ll~L~~~L~~~L~-~~g 220 (436)
+ || .||.++++||..|.++|. +.+
T Consensus 401 -~--ya-~da~~~~~l~~~l~~~L~~~~~ 425 (832)
T 1bgx_T 401 -E--AG-ERAALSERLFANLWGRLEGEER 425 (832)
T ss_dssp -S--HH-HHHHHHHHHHHHHHHHHTTCHH
T ss_pred -H--HH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 1 88 799999999999999998 544
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.63 E-value=0.0005 Score=62.35 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=64.5
Q ss_pred hHHHHHHHhhCCCCceEEEEehHHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHHHH
Q 013817 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (436)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~ 170 (436)
+++..|..++.+. ..||||+.+|+..|.+.+.-.|+.+ ....++|+..++..+. . ...++|.++++.
T Consensus 81 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~---~~~~~iDt~~l~~~~~--~------~~~~~L~~l~~~ 147 (186)
T 2p1j_A 81 EVLPEFLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLD---WERPYIDTLALAKSLL--K------LRSYSLDSVVEK 147 (186)
T ss_dssp HHHHHHHHHSSSC--EEEETTHHHHHHHHHHHHHHHHCCC---CCCCEEEHHHHHHHHT--C------CSCCSHHHHHHH
T ss_pred HHHHHHHHHHCCC--EEEEECcHHHHHHHHHHHHHcCCCC---CCCCEEeHHHHHHHHh--h------cCCCCHHHHHHH
Confidence 3456677777653 5699999999999875433223221 0246889545555554 2 247899999986
Q ss_pred HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013817 171 LLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKG 220 (436)
Q Consensus 171 ~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g 220 (436)
+|++... ...|..||.++.+|+..+..+.+++|
T Consensus 148 -~gi~~~~----------------~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 148 -LGLGPFR----------------HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp -TTCCSTT----------------CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred -cCCCCCC----------------CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5766432 13589999999999998875544443
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.34 E-value=0.0013 Score=59.67 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=66.5
Q ss_pred hHHHHHHHhhCCCCceEEEEehHHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHh---hcccCCCCCCcCcccHHHH
Q 013817 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHL---HHKQLGRKLPKETKSLANI 167 (436)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yL---l~~~~~~~~~~~~~gL~~L 167 (436)
++...|.+++.+ .+.||||+.+|+..|...+. ...++|+..++... ..+. ...++|..|
T Consensus 72 ~v~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~~----------~~~~idt~~~~~~~~~~~~p~------~~~~~L~~l 133 (189)
T 1wlj_A 72 VARLEILQLLKG--KLVVGHDLKHDFQALKEDMS----------GYTIYDTSTDRLLWREAKLDH------CRRVSLRVL 133 (189)
T ss_dssp HHHHHHHHHHTT--SEEEESSHHHHHHHTTCCCT----------TCEEEEGGGCHHHHHHHTC-----------CCHHHH
T ss_pred HHHHHHHHHHCC--CEEEECCcHHHHHHHHHhCC----------CCceechHhhhhhhhcccCCC------CCCccHHHH
Confidence 456677778864 45699999999999876421 13578933332211 1111 247899999
Q ss_pred HHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013817 168 CKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221 (436)
Q Consensus 168 v~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g~ 221 (436)
++++||++...+.... -|..||.++.+|+..+...++..+.
T Consensus 134 ~~~~lgi~~~~~~~~H-------------~Al~Da~ata~l~~~l~~~~~~~~~ 174 (189)
T 1wlj_A 134 SERLLHKSIQNSLLGH-------------SSVEDARATMELYQISQRIRARRGL 174 (189)
T ss_dssp HHHHTCCCCSCCTTCC-------------CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCCCCCc-------------CcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999998765421111 2889999999999999988887654
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.00 E-value=0.01 Score=55.03 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=61.6
Q ss_pred CceEEEEehHHhHHHHHhhcccCCCc--cCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHHHHHcCCccccccc
Q 013817 104 DILKLGFKFKQDLIYLSSTFCSQGCD--IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQ 181 (436)
Q Consensus 104 ~i~KVgh~~k~Dl~~L~~~~gi~g~~--~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~l~K~~q 181 (436)
..+.||||+.+|+..|.+.+...|+. | +. ...++|+..++..+. + ..+|..+++. +|+++... .
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p-~~-~~~~iDt~~l~~~~~-~---------~~~L~~l~~~-~gi~~~~~-~ 191 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNP-FH-PFSSFDTATLAGLAY-G---------QTVLAKACQA-AGMEFDNR-E 191 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCC-EE-EEEEEEHHHHHHHHH-S---------CCSHHHHHHH-TTCCCCTT-S
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCC-cc-ccceeeHHHHHHHHc-C---------CCCHHHHHHH-cCCCcCCC-C
Confidence 44669999999999987654322321 1 00 135789545555443 2 3589999886 58765311 1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013817 182 CSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (436)
Q Consensus 182 ~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l 222 (436)
. +.|..||.++.+|+..+..++.+.|.|
T Consensus 192 ~-------------H~Al~Da~~ta~l~~~l~~~~~~~~~~ 219 (224)
T 2f96_A 192 A-------------HSARYDTEKTAELFCGIVNRWKEMGGW 219 (224)
T ss_dssp C-------------CCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred C-------------CChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 228899999999999999999887765
No 16
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.94 E-value=0.019 Score=51.87 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=62.2
Q ss_pred hHHHHHHHhhCCCCceEEEEehHHhHHHHHhhcccCCCc-cCccCCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHHH
Q 013817 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCD-IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (436)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~-~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~ 169 (436)
+++..+..++.+. ..||||+.+|+..|...+.-.|+. |.+.....++|+..++..+ .+. ..++|.+|++
T Consensus 84 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~-~p~-------~~~~L~~l~~ 153 (194)
T 2gui_A 84 EVADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKM-FPG-------KRNSLDALCA 153 (194)
T ss_dssp HHHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHH-STT-------SCCSHHHHHH
T ss_pred HHHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHH-cCC-------CCCCHHHHHH
Confidence 3556677778654 459999999999987654322322 1111014689944455444 332 2579999998
Q ss_pred HHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (436)
Q Consensus 170 ~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~ 214 (436)
. +|++.... ... -|..||.++.+|+..+..
T Consensus 154 ~-~gi~~~~~-~~H-------------~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 154 R-YEIDNSKR-TLH-------------GALLDAQILAEVYLAMTG 183 (194)
T ss_dssp H-TTCCCTTC-SSC-------------CHHHHHHHHHHHHHHHTC
T ss_pred H-cCcCCCCC-CCC-------------ChHHHHHHHHHHHHHHHh
Confidence 6 57765321 011 288999999999988763
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=95.92 E-value=0.035 Score=51.75 Aligned_cols=110 Identities=17% Similarity=0.194 Sum_probs=67.4
Q ss_pred hHHHHHHHhhCCC--CceEEEEeh-HHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccC-CCCCC-cCcccHH
Q 013817 91 SIWELLKELFVSP--DILKLGFKF-KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQL-GRKLP-KETKSLA 165 (436)
Q Consensus 91 ~~~~~L~~lLe~~--~i~KVgh~~-k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~-~~~~~-~~~~gL~ 165 (436)
++...|..++..- ..+.|+||+ .+|+..|.+.+.-.|+. +.....++|+..++..+..... ....| ...++|.
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~--~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~ 175 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGAR--LPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLG 175 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCC--CCTTCEEEEHHHHHHHHHHHC----------CCSHH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCC--CCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHH
Confidence 3456677788762 256699999 99999987654322322 1111357994455655542000 00000 2478999
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013817 166 NICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (436)
Q Consensus 166 ~Lv~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~ 218 (436)
+++++++|++... .+.|..||.++.+|+..+.+.+.+
T Consensus 176 ~l~~~~~gi~~~~----------------~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 176 SLFHRYFRAEPSA----------------AHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp HHHHHHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHhCCCCcc----------------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888876432 244889999999999988776653
No 18
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=95.62 E-value=0.2 Score=52.16 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=61.7
Q ss_pred HHHHHHHhhCCCCceEEEEe-hHHhHHHHHhhcccCCCccCccC----CCceeeHHHHHHHhhc--ccCCC-----CCCc
Q 013817 92 IWELLKELFVSPDILKLGFK-FKQDLIYLSSTFCSQGCDIGFDR----VEPYLDITSIYNHLHH--KQLGR-----KLPK 159 (436)
Q Consensus 92 ~~~~L~~lLe~~~i~KVgh~-~k~Dl~~L~~~~gi~g~~~~~~~----~~~v~Dlt~La~yLl~--~~~~~-----~~~~ 159 (436)
+...+..++..++.+.|||| +.+|...|...|.-.|..+ +.. ....+|+..++..+.. +. +. ....
T Consensus 84 vl~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~-~~~~w~~~~~~iDtl~l~r~~~~~~~~-~~~wP~~~~~~ 161 (482)
T 2qxf_A 84 FAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP-YAWSWQHDNSRWDLLDVMRACYALRPE-GINWPENDDGL 161 (482)
T ss_dssp HHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCS-SGGGTGGGCEEEEHHHHHHHHHHHCCT-TSCCCBCTTSS
T ss_pred HHHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCc-cccccccCCceeeHHHHHHHHHHhCcc-cccCcccccCC
Confidence 45556667875556779999 8999998875533223221 110 0456785556555432 10 00 0012
Q ss_pred CcccHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 160 ETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (436)
Q Consensus 160 ~~~gL~~Lv~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~ 214 (436)
.+++|..|++. +|++....+ -|..||.++..|+..+..
T Consensus 162 ~s~kL~~L~~~-~Gi~~~~aH----------------rAL~DA~aTa~l~~~l~~ 199 (482)
T 2qxf_A 162 PSFRLEHLTKA-NGIEHSNAH----------------DAMADVYATIAMAKLVKT 199 (482)
T ss_dssp BCCCHHHHHHH-TTCCCC-------------------CTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-cCCCCCCCC----------------CHHHHHHHHHHHHHHHHH
Confidence 47899999875 476643222 267899999999888764
No 19
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=95.55 E-value=0.043 Score=51.78 Aligned_cols=110 Identities=13% Similarity=0.060 Sum_probs=68.1
Q ss_pred hHHHHHHHhhCC--CCceEEEEeh-HHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCC-CCCCcCcccHHH
Q 013817 91 SIWELLKELFVS--PDILKLGFKF-KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLG-RKLPKETKSLAN 166 (436)
Q Consensus 91 ~~~~~L~~lLe~--~~i~KVgh~~-k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~-~~~~~~~~gL~~ 166 (436)
+++..|..++.+ +...-|+||+ .+|+..|.+.+.-.|+...+ ....++|+..++..+...... ......+++|.+
T Consensus 103 ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~-~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~ 181 (242)
T 3mxm_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (242)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHHHHCC------CCCSHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCc-cCCeEeehHHHHHHHHhhcCccccCCCCCcCHHH
Confidence 456667777776 2245699995 99999997654433422100 012578955556555421000 000124789999
Q ss_pred HHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 167 ICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (436)
Q Consensus 167 Lv~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~ 217 (436)
|+++++|++....+ -|..||.++.+|+..+...+.
T Consensus 182 l~~~~~gi~~~~~H----------------~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 182 IYTRLYWQAPTDSH----------------TAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHHHHHSSCCSSTT----------------SHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHhCCCCCCCc----------------ChHHHHHHHHHHHHHHHHHHH
Confidence 99999998764333 288999999999877765554
No 20
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=95.31 E-value=0.075 Score=52.32 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=68.0
Q ss_pred hHHHHHHHhhCC--CCceEEEEe-hHHhHHHHHhhcccCCCccCccCCCceeeHHHHHHHhhcccCC-CCCCcCcccHHH
Q 013817 91 SIWELLKELFVS--PDILKLGFK-FKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLG-RKLPKETKSLAN 166 (436)
Q Consensus 91 ~~~~~L~~lLe~--~~i~KVgh~-~k~Dl~~L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~-~~~~~~~~gL~~ 166 (436)
+++..|.+++.+ +....|+|| +.+|+..|.+.+.-.|+...+ ....++|+..++..+...... ......+++|.+
T Consensus 103 ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~-~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~ 181 (314)
T 3u3y_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (314)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHTTC-------CCCCSHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC-CCceEEeHHHHHHHHHHHhCccccccCCCCCHHH
Confidence 455666777776 225669999 999999997655433422100 012478943334434321100 001124789999
Q ss_pred HHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 167 ICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (436)
Q Consensus 167 Lv~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~ 217 (436)
++++++|++....|. |..||.++.+|+..+.+++.
T Consensus 182 L~~~l~gi~~~~aHr----------------Al~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 182 IYTRLYWQAPTDSHT----------------AEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp HHHHHHSSCCSCSSS----------------HHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHhcCCCCCCCCC----------------HHHHHHHHHHHHHHHHHHHH
Confidence 999988987643332 88999999999888776654
No 21
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=94.14 E-value=0.14 Score=46.30 Aligned_cols=98 Identities=9% Similarity=0.109 Sum_probs=61.5
Q ss_pred HHHHHHHhhCCCC-----ceEEEEehHHhHH-HHHhhcccCCCccCccC-CCceeeHHHHHHHhhcccCCCCCCcCcccH
Q 013817 92 IWELLKELFVSPD-----ILKLGFKFKQDLI-YLSSTFCSQGCDIGFDR-VEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (436)
Q Consensus 92 ~~~~L~~lLe~~~-----i~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~~-~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL 164 (436)
++..+..++.+.. ..-|+||+.+|+. .|...+...|+. +.. ...++|+..++..+.... ...++|
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~--~p~~~~~~~dt~~l~~~~~~~~------~~~~~L 159 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK--YPPFAKKWINIRKSYGNFYKVP------RSQTKL 159 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCC--CCGGGSEEEEHHHHHHHHHTCC------GGGCSH
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCC--CcccccceEEHHHHHHHHhCCC------CccchH
Confidence 4455556665432 3469999999996 886543322322 100 126899656666554321 135799
Q ss_pred HHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 165 ANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (436)
Q Consensus 165 ~~Lv~~~Lg~~l~K-~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~ 214 (436)
.++++. +|++... .+ -|..||.++.+|+..+..
T Consensus 160 ~~l~~~-~gi~~~~~~H----------------~Al~Da~~ta~l~~~l~~ 193 (204)
T 1w0h_A 160 TIMLEK-LGMDYDGRPH----------------CGLDDSKNIARIAVRMLQ 193 (204)
T ss_dssp HHHHHH-TTCCCCSCTT----------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCCcc----------------CcHHHHHHHHHHHHHHHH
Confidence 999977 5776531 12 288999999999988763
No 22
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=92.31 E-value=1.6 Score=38.40 Aligned_cols=32 Identities=16% Similarity=-0.062 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCC----CceEEEEehHHhHHHHHhhc
Q 013817 92 IWELLKELFVSP----DILKLGFKFKQDLIYLSSTF 123 (436)
Q Consensus 92 ~~~~L~~lLe~~----~i~KVgh~~k~Dl~~L~~~~ 123 (436)
+...+.+++.+. ..+.||||+.+|+..|...+
T Consensus 84 v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~ 119 (180)
T 2igi_A 84 AELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYM 119 (180)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHH
Confidence 455666677651 24569999999999998653
No 23
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=91.82 E-value=1 Score=43.90 Aligned_cols=102 Identities=14% Similarity=0.187 Sum_probs=57.9
Q ss_pred HHHHHHHhhCCCCceEEEEeh------HHhH-HHHHhhcccCCCccCcc-CCCceeeHHHHHHHhhcccCCCCCCcCccc
Q 013817 92 IWELLKELFVSPDILKLGFKF------KQDL-IYLSSTFCSQGCDIGFD-RVEPYLDITSIYNHLHHKQLGRKLPKETKS 163 (436)
Q Consensus 92 ~~~~L~~lLe~~~i~KVgh~~------k~Dl-~~L~~~~gi~g~~~~~~-~~~~v~Dlt~La~yLl~~~~~~~~~~~~~g 163 (436)
++..|..++.+..+ |+||+ ..|+ ..|.+.+...|+. +. ....++|+..++..+..... .......++
T Consensus 98 vl~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~--~p~~~~~~iDt~~l~~~~~~~~~-~~~~~~~~~ 172 (308)
T 3cg7_A 98 VYEQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQ--MPAFFRQYINLYKIFTNEMDRMG-PKELSATTN 172 (308)
T ss_dssp HHHHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCC--CCGGGSEEEEHHHHHHHHHHHHC-CCCCCCCSH
T ss_pred HHHHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCC--CchhhcceeeHHHHHHHHhcccc-ccccccCcC
Confidence 44555566665433 56666 8999 5775443322322 11 01357896567766554210 000011578
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 164 LANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (436)
Q Consensus 164 L~~Lv~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~ 214 (436)
|.++++ ++|++.... . +-|..||.++.+|+..+..
T Consensus 173 L~~l~~-~~gi~~~~~--~-------------HrAl~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 173 IGKMNE-YYDLPTIGR--A-------------HDAMDDCLNIATILQRMIN 207 (308)
T ss_dssp HHHHHH-HTTCCCCSC--T-------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCCCC--C-------------cCHHHHHHHHHHHHHHHHH
Confidence 999995 457765321 0 1288999999999888763
No 24
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=90.14 E-value=1.3 Score=42.76 Aligned_cols=98 Identities=10% Similarity=0.094 Sum_probs=61.8
Q ss_pred HHHHHHHhhCCC-----CceEEEEehHHhHH-HHHhhcccCCCccCcc-CCCceeeHHHHHHHhhcccCCCCCCcCcccH
Q 013817 92 IWELLKELFVSP-----DILKLGFKFKQDLI-YLSSTFCSQGCDIGFD-RVEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (436)
Q Consensus 92 ~~~~L~~lLe~~-----~i~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~-~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL 164 (436)
++..|..++.+. ...-|+||+.+|+. .|...+...|+. +. ....++|+..++..+.+.. ...++|
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~--~p~~~~~~iDt~~l~~~~~~~~------~~~~~L 227 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK--YPPFAKKWINIRKSYGNFYKVP------RSQTKL 227 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBC--CCGGGSEEEEHHHHHHHHHTCC------GGGCSH
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCC--CCcccchHHHHHHHHHHHhCCC------CCCccH
Confidence 455566676653 13569999999999 887654322322 10 1135889545555554321 124899
Q ss_pred HHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 165 ANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (436)
Q Consensus 165 ~~Lv~~~Lg~~l~K-~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~ 214 (436)
.+|++. +|++... .+ -|..||.++.+|+..+..
T Consensus 228 ~~l~~~-~gi~~~g~~H----------------~Al~DA~ata~l~~~l~~ 261 (299)
T 1zbh_A 228 TIMLEK-LGMDYDGRPN----------------CGLDDSKNIARIAVRMLQ 261 (299)
T ss_dssp HHHHHH-TTCCCCSCTT----------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCCCC----------------ChHHHHHHHHHHHHHHHH
Confidence 999986 5766531 12 288999999999988763
No 25
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=89.23 E-value=1.6 Score=43.30 Aligned_cols=98 Identities=10% Similarity=0.098 Sum_probs=61.8
Q ss_pred HHHHHHHhhCCC-----CceEEEEehHHhHH-HHHhhcccCCCccCcc-CCCceeeHHHHHHHhhcccCCCCCCcCcccH
Q 013817 92 IWELLKELFVSP-----DILKLGFKFKQDLI-YLSSTFCSQGCDIGFD-RVEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (436)
Q Consensus 92 ~~~~L~~lLe~~-----~i~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~-~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL 164 (436)
++..|..++.+. ....|+||+.+|+. .|...+...|+. +. ....++|+..++..+.+.. ...++|
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~--~p~~~~~~iDt~~l~~~~~~~~------~~~~~L 277 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK--YPPFAKKWINIRKSYGNFYKVP------RSQTKL 277 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBC--CCGGGSEEEEHHHHHHHHHTCC------GGGGSH
T ss_pred HHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCC--CccccchHHHHHHHHHHHhcCC------CCCCCH
Confidence 455566667553 13569999999999 887654322322 10 1135889555555554321 124899
Q ss_pred HHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 165 ANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (436)
Q Consensus 165 ~~Lv~~~Lg~~l~K-~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~ 214 (436)
..|++. +|++... .+ -|..||.++.+|+..+..
T Consensus 278 ~~l~~~-~gi~~~g~~H----------------rAl~DA~ata~ll~~ll~ 311 (349)
T 1zbu_A 278 TIMLEK-LGMDYDGRPH----------------CGLDDSKNIARIAVRMLQ 311 (349)
T ss_dssp HHHHHH-TTCCCCSCTT----------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCCCC----------------CHHHHHHHHHHHHHHHHH
Confidence 999976 5776531 12 288999999999988763
No 26
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=89.13 E-value=7.3 Score=42.67 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=69.9
Q ss_pred hHHHHHHHhhC--CCCceEEEEehH-HhHHHHHhhcccCCCccCccC-------------------CCceeeHHHHHHHh
Q 013817 91 SIWELLKELFV--SPDILKLGFKFK-QDLIYLSSTFCSQGCDIGFDR-------------------VEPYLDITSIYNHL 148 (436)
Q Consensus 91 ~~~~~L~~lLe--~~~i~KVgh~~k-~Dl~~L~~~~gi~g~~~~~~~-------------------~~~v~Dlt~La~yL 148 (436)
+++..+..++. +|++ .+|||.. +|+..|......+|+...+.+ -...+|+-.++...
T Consensus 189 ~LL~~f~~~i~~~dPDi-ivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~ 267 (775)
T 1qht_A 189 EMIKRFLRVVREKDPDV-LITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRT 267 (775)
T ss_dssp HHHHHHHHHHHHHCCSE-EEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCE-EEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHh
Confidence 34555555554 5775 4899986 699987543222222211100 02467965555554
Q ss_pred hcccCCCCCCcCcccHHHHHHHHcCCcccc--ccccc-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 149 HHKQLGRKLPKETKSLANICKELLDISLSK--ELQCS-DWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (436)
Q Consensus 149 l~~~~~~~~~~~~~gL~~Lv~~~Lg~~l~K--~~q~s-dW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~ 214 (436)
.. ..+++|.++++.+||..... ..... -|...+--..-+.|...||..++.|+..+.+
T Consensus 268 ~~--------l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 268 IN--------LPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp SC--------CSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC--------cCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 32 23799999999999975321 11122 3554442267799999999999999877654
No 27
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=83.94 E-value=22 Score=39.39 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=88.0
Q ss_pred CCCeEEEEEeE-eC---CCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC---------------C-ch
Q 013817 31 QSSLVGLDAEW-KP---QRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI---------------P-LP 90 (436)
Q Consensus 31 ~~~~Va~D~E~-~~---~~~~~~~~~~v~LiQLa~~~~~~~~~~~~~~~~~~v~liD~~~l---------------~-~~ 90 (436)
.-.+++||.|. .+ .++.. ....--++||+... ..+...++++..... . ..
T Consensus 189 ~l~ilsfDIEt~s~~~g~fP~~-~~~~d~Ii~Is~~~---------~~g~~~~~~~~~~~~~~~~~~i~~~~v~~~~~E~ 258 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPDS-QKAEFPIISIALAG---------SDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEY 258 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCCT-TTCCSCEEEEEEEE---------TTSCEEEEEECSSCCCCCCEEETTEEEEEESSHH
T ss_pred CceEEEEEEEeCcCCCCCCCCc-cccCCcEEEEEEEc---------cCCCcEEEEEeCCcccccccCCCCCeEEEeCCHH
Confidence 34679999999 42 22210 11113588887641 001235666543211 1 13
Q ss_pred hHHHHHHHhhCCCCceEEEEehH-HhHHHHHhhcccCCCcc---CccC---------CCceeeHHHHHH------Hhhcc
Q 013817 91 SIWELLKELFVSPDILKLGFKFK-QDLIYLSSTFCSQGCDI---GFDR---------VEPYLDITSIYN------HLHHK 151 (436)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~k-~Dl~~L~~~~gi~g~~~---~~~~---------~~~v~Dlt~La~------yLl~~ 151 (436)
+++..+..++.+.. ..+|||.. +|+..|......+|+.. .+.. -...+|+-.+.. |....
T Consensus 259 ~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~ 337 (847)
T 1s5j_A 259 ELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG 337 (847)
T ss_dssp HHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT
T ss_pred HHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccc
Confidence 57778888888876 56999986 69999864422223210 0110 123567432221 11110
Q ss_pred cCCCCCCcCcccHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 013817 152 QLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFN 210 (436)
Q Consensus 152 ~~~~~~~~~~~gL~~Lv~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~ 210 (436)
...+++|.++++.+||..-..- ...|.. .-...-+.|.-.||..++.|+.
T Consensus 338 ------kl~sysL~~Va~~~Lg~~K~dv--~~~i~~-~~~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 338 ------KYNEYNLDAVAKALLGTSKVKV--DTLISF-LDVEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp ------CCSSCSHHHHHHHHHCCCCC----SSCTTT-CCHHHHHHHHHHHHHHHHHTTT
T ss_pred ------ccccccHHHHHHHHhCCCCcch--hHhhhh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 0137899999999999642111 122322 1125678999999999999953
No 28
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=82.89 E-value=2.3 Score=36.80 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=46.4
Q ss_pred HHHHHh----cCCceeecCCC-----------CCChHHHHHHHhcCCcEEEecChhHHhhhcccCCcEEEEcCC
Q 013817 369 AKHLRC----VGIDAATPRSK-----------KPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSL 427 (436)
Q Consensus 369 a~~LR~----~G~d~~~~~~~-----------~~~~~~~~~~a~~e~ri~lT~d~~l~~~~~~~~~~~~~v~~~ 427 (436)
.+.||. .+++..+.... +.-|..++..|++.+.+++|.|..+.+.+...|..+++++..
T Consensus 60 L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~a~lvTnD~~l~kvA~~~GI~V~~l~~~ 133 (142)
T 3i8o_A 60 LRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETNSILLTSDWIQYNLAKAQGIEAYFLEAA 133 (142)
T ss_dssp HHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTTCEEEESCHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhCCEEEcCCHHHHHHHHHcCCEEEEeccc
Confidence 444553 47777776531 123777999999999999999999999999999999998764
No 29
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=81.09 E-value=39 Score=32.41 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=54.3
Q ss_pred hCCCCceEEEEehHHhHHHHHhhcccCCCccC----cc-----CCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHHHH
Q 013817 100 FVSPDILKLGFKFKQDLIYLSSTFCSQGCDIG----FD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (436)
Q Consensus 100 Le~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~----~~-----~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~ 170 (436)
+-++++..|.|....|+-.|.+.+--..+ |. |- ....++|+-.++....+ ..-||.++++.
T Consensus 146 vl~~~v~WvtfH~~yDf~yL~k~lt~~~L-P~~~~eF~~~l~~~FP~vYD~K~l~~~~~~---------l~ggL~~lA~~ 215 (285)
T 4gmj_B 146 VLCEGVKWLSFHSGYDFGYLIKILTNSNL-PEEELDFFEILRLFFPVIYDVKYLMKSCKN---------LKGGLQEVAEQ 215 (285)
T ss_dssp SSCTTCEEEESSCHHHHHHHHHHHHTSCC-CSSHHHHHHHHHHHCSCEEEHHHHGGGSTT---------CCSCHHHHHHH
T ss_pred HhcCCCceEEecchhhHHHHHHHHhCCCC-CCCHHHHHHHHHHHCchhhhHHHHHHhccc---------cCChHHHHHHh
Confidence 34677888988888999876544210000 00 00 00247883333322211 24589999876
Q ss_pred HcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013817 171 LLDISL-SKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (436)
Q Consensus 171 ~Lg~~l-~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~ 218 (436)
||++- .+.+ -|..|++.+..++-.|++.+-.
T Consensus 216 -L~v~r~g~~H----------------qAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 216 -LELERIGPQH----------------QAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp -TTCCCCSCTT----------------SHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCCCCC----------------cchhHHHHHHHHHHHHHHHHhc
Confidence 45442 1112 2889999999999999887764
No 30
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=79.78 E-value=14 Score=41.39 Aligned_cols=114 Identities=14% Similarity=0.200 Sum_probs=65.1
Q ss_pred hHHHHHHHhhC--CCCceEEEEehH-HhHHHHHhhcccCCCcc--Ccc---------------------------CC--C
Q 013817 91 SIWELLKELFV--SPDILKLGFKFK-QDLIYLSSTFCSQGCDI--GFD---------------------------RV--E 136 (436)
Q Consensus 91 ~~~~~L~~lLe--~~~i~KVgh~~k-~Dl~~L~~~~gi~g~~~--~~~---------------------------~~--~ 136 (436)
+++..+..++. ||+|+ +|||.. +|+..|.+....+|+.. .+. .+ .
T Consensus 315 eLL~~F~~~i~~~DPDII-vGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR 393 (919)
T 3iay_A 315 EMLSNWRNFIIKVDPDVI-IGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGR 393 (919)
T ss_dssp HHHHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTC
T ss_pred HHHHHHHHHHHHhCCCEE-EecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCe
Confidence 45555555553 68863 799996 69998843311112110 000 00 1
Q ss_pred ceeeHHHHHHHhhcccCCCCCCcCcccHHHHHHHHcCCcccc--cccccC-CCCCCC-CHHHHHHHHHHHHHHHHHHHHH
Q 013817 137 PYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSK--ELQCSD-WSNRPL-TEEQKNYAAIDAHCLIEIFNIF 212 (436)
Q Consensus 137 ~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~l~K--~~q~sd-W~~RPL-~~~ql~YAA~DA~~Ll~L~~~L 212 (436)
..+|+-.++..... ..+++|.++++.+||..... ...... |...+- ...-+.|...||..+++|+..+
T Consensus 394 ~~lDl~~~~k~~~~--------l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 394 LQLDLLQFIQREYK--------LRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEEEHHHHHHHHCC--------CSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEhHHHHHhhcC--------CCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36785555544322 34899999999999964321 112222 222211 1345789999999999998887
Q ss_pred H
Q 013817 213 Q 213 (436)
Q Consensus 213 ~ 213 (436)
.
T Consensus 466 ~ 466 (919)
T 3iay_A 466 M 466 (919)
T ss_dssp T
T ss_pred h
Confidence 3
No 31
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=77.00 E-value=3.9 Score=36.57 Aligned_cols=32 Identities=13% Similarity=-0.098 Sum_probs=22.6
Q ss_pred HHHHHHHhhCCCC----ceEEEEehHHhHHHHHhhc
Q 013817 92 IWELLKELFVSPD----ILKLGFKFKQDLIYLSSTF 123 (436)
Q Consensus 92 ~~~~L~~lLe~~~----i~KVgh~~k~Dl~~L~~~~ 123 (436)
+...+.+++.+.- ...||||+.+|+..|.+.+
T Consensus 88 v~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~ 123 (194)
T 2gbz_A 88 AEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQM 123 (194)
T ss_dssp HHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHH
Confidence 4455666676532 2369999999999998754
No 32
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=73.93 E-value=5.7 Score=36.33 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=56.1
Q ss_pred hHHHHHHHhhCCCCceEEEEeh--------HHhHHH-HHhhcccCCCccCccCCCceeeHHHHHHHhhcccCCCCCCcCc
Q 013817 91 SIWELLKELFVSPDILKLGFKF--------KQDLIY-LSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKET 161 (436)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~--------k~Dl~~-L~~~~gi~g~~~~~~~~~~v~Dlt~La~yLl~~~~~~~~~~~~ 161 (436)
+++..+..++.+.-+ ||||+ ..|+.. |...+...|+.. ......++|+...+...... ...
T Consensus 106 ~v~~~f~~~l~~~~l--v~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~-p~~~~~~iD~~~~~~~~~~~-------~p~ 175 (224)
T 2xri_A 106 QVLERVDEWMAKEGL--LDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPV-ADYFKQWINLKKAYSFAMGC-------WPK 175 (224)
T ss_dssp HHHHHHHHHHHHTTT--TSTTSCEEEEESSSHHHHTHHHHHHHHHTCCC-CGGGSCEEEHHHHHHHHHTS-------CCT
T ss_pred HHHHHHHHHHhhccc--ccCCCceEEEEeChhhHHHHHHHHHHHhCCCC-cccccceEeHHHHHHHHhcc-------CCC
Confidence 345566667776544 78988 999985 643332223220 00013678954333322211 114
Q ss_pred ccHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 013817 162 KSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQ 213 (436)
Q Consensus 162 ~gL~~Lv~~~Lg~~l~K~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~ 213 (436)
++|..|++ .+|++... +. .-|..||.++.+|+..+.
T Consensus 176 ~~L~~l~~-~~gi~~~~--~~-------------H~Al~DA~~ta~l~~~l~ 211 (224)
T 2xri_A 176 NGLLDMNK-GLSLQHIG--RP-------------HSGIDDCKNIANIMKTLA 211 (224)
T ss_dssp TTHHHHHH-HTTCCCCS--CT-------------TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HcCCCCCC--CC-------------cChHHHHHHHHHHHHHHH
Confidence 79999987 55765421 11 228899999999988876
No 33
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=73.55 E-value=2.4 Score=36.35 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=34.5
Q ss_pred ChHHHHHHHhcCCcEEEecChhHHhhhcccCCcEEEEc
Q 013817 388 EPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVK 425 (436)
Q Consensus 388 ~~~~~~~~a~~e~ri~lT~d~~l~~~~~~~~~~~~~v~ 425 (436)
-|..|+..|++-+.+++|.|..+.+.+...|..+++++
T Consensus 86 vD~~ll~lA~~~~~~lvTnD~~L~kvA~~~GI~Vl~l~ 123 (134)
T 3ix7_A 86 VDEKLLFLARDLEAALVTNDHALLQMARIYGVKALSIQ 123 (134)
T ss_dssp HHHHHHHHHHHTTCEEEESCHHHHHHHHHTTCCEEEHH
T ss_pred HHHHHHHHHHHhCCEEEeCCHHHHHHHHHCCCeEEehH
Confidence 47789999999999999999999999999888888775
No 34
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=73.38 E-value=2.1 Score=36.62 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=35.2
Q ss_pred CCChHHHHHHHhcCCcEEEecChhHHhhhcccCCcEEEEcCCC
Q 013817 386 KPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRVKSLL 428 (436)
Q Consensus 386 ~~~~~~~~~~a~~e~ri~lT~d~~l~~~~~~~~~~~~~v~~~~ 428 (436)
++ |.-|+..|.+.+-+|+|.|++|.+++...|..+++++...
T Consensus 98 ~~-D~~Ila~A~~~~~~LvT~D~~l~~~a~~~Gv~vi~~~~~~ 139 (147)
T 1o4w_A 98 EG-DPSLIEAAEKYGCILITNDKELKRKAKQRGIPVGYLKEDK 139 (147)
T ss_dssp CS-HHHHHHHHHHHTCEEECCCHHHHHHHHHTTCCEECCCCCC
T ss_pred Cc-hHHHHHHHHHhCCEEEECCHHHHHHHHHCCCeEEEecCCc
Confidence 46 8889999999999999999999988777677888876653
No 35
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=70.51 E-value=22 Score=39.03 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=62.2
Q ss_pred hHHHHHHHhhC--CCCceEEEEehH-HhHHHHHhhcccCCCccCccC--------------------C--CceeeHHHHH
Q 013817 91 SIWELLKELFV--SPDILKLGFKFK-QDLIYLSSTFCSQGCDIGFDR--------------------V--EPYLDITSIY 145 (436)
Q Consensus 91 ~~~~~L~~lLe--~~~i~KVgh~~k-~Dl~~L~~~~gi~g~~~~~~~--------------------~--~~v~Dlt~La 145 (436)
+++..+..++. +|+++ +|||.. +|+..|......+|+...+.+ + ...+|+-.+.
T Consensus 206 ~lL~~f~~~i~~~dPDii-~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~l 284 (786)
T 3k59_A 206 QLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEAL 284 (786)
T ss_dssp HHHHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHH
T ss_pred HHHHHHHHHHHHcCCCEE-EecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHH
Confidence 34555544444 57754 899988 599987532111111110100 0 1267843333
Q ss_pred HHhhcccCCCCCCcCcccHHHHHHHHcCCcccc------cccccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013817 146 NHLHHKQLGRKLPKETKSLANICKELLDISLSK------ELQCSD-WSNRPLTEEQKNYAAIDAHCLIEIFNIF 212 (436)
Q Consensus 146 ~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~l~K------~~q~sd-W~~RPL~~~ql~YAA~DA~~Ll~L~~~L 212 (436)
.... .. ..+++|.++++.+||..-.. ...... |... ...-+.|...||..+++|+..+
T Consensus 285 k~~~-~~------l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~--~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 285 KSAF-WN------FSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAED--KPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HHTT-CC------CSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhcc-CC------CCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 2210 11 34899999999999965211 011121 2222 1467889999999999998875
No 36
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=65.57 E-value=8.5 Score=38.41 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=64.9
Q ss_pred hHHHHHHHhh--CCCCceEEEEehH-HhHHHHHhh----ccc--------CCCc------cCc------cCC-CceeeHH
Q 013817 91 SIWELLKELF--VSPDILKLGFKFK-QDLIYLSST----FCS--------QGCD------IGF------DRV-EPYLDIT 142 (436)
Q Consensus 91 ~~~~~L~~lL--e~~~i~KVgh~~k-~Dl~~L~~~----~gi--------~g~~------~~~------~~~-~~v~Dlt 142 (436)
+++..+..++ .+|+++ +|||.. +|+..|... +|+ .|-. ..+ ... ..++|+-
T Consensus 193 ~LL~~f~~~i~~~dPDii-~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~~ 271 (388)
T 1noy_A 193 DMLMEYINLWEQKRPAIF-TGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYL 271 (388)
T ss_dssp HHHHHHHHHHHHSCCSEE-ECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHH
T ss_pred HHHHHHHHHHHHhCCcEE-EecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEHH
Confidence 3555666665 468764 899995 699876422 231 0100 000 000 1277865
Q ss_pred HHHHHhhcccCCCCCCcCcccHHHHHHHHcCCcc-cccccccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013817 143 SIYNHLHHKQLGRKLPKETKSLANICKELLDISL-SKELQCSD-WSNRPLTEEQKNYAAIDAHCLIEIFNIF 212 (436)
Q Consensus 143 ~La~yLl~~~~~~~~~~~~~gL~~Lv~~~Lg~~l-~K~~q~sd-W~~RPL~~~ql~YAA~DA~~Ll~L~~~L 212 (436)
.++..+-... ..+++|.++++.+||..- +-..+... |. .-...-+.|...||..+++|+..+
T Consensus 272 ~~~k~~~~~~------l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~--~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 272 DLYKKFAFTN------LPSFSLESVAQHETKKGKLPYDGPINKLRE--TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp HHHHHHTCCC------CSCCSHHHHHHHHHSCCCCCCSSCGGGHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCcCc------ccCCCHHHHHHHHhCCCCCCcHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555531111 247999999999998642 11122222 32 112456899999999999999874
No 37
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=63.94 E-value=4.9 Score=34.64 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCceeecCCCCCChHHHHHHHhcCCcEEEecChhHHhhhcccCCcEE
Q 013817 366 EGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIY 422 (436)
Q Consensus 366 ~~la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ri~lT~d~~l~~~~~~~~~~~~ 422 (436)
+.|...||..|.- . ++.|.-|+..|...|-+|+|+|++|..-..+.+...+
T Consensus 98 ~~l~~~l~~~G~~---~---~~~D~lIaA~A~~~~~~LvT~d~dF~~i~~l~~l~~~ 148 (150)
T 3dbo_B 98 ARLRIHLAESGRR---V---RINDLWIAAVAASRALPVITQDDDFAALDGAASVEII 148 (150)
T ss_dssp HHHHHHHHHHTCC---C---BHHHHHHHHHHHHTTCCEEESSSSGGGGTTSTTCCEE
T ss_pred HHHHHHHHHcCCC---C---CCchHHHHHHHHHCCCEEEECChhhhhCCCccCceee
Confidence 4566667777862 1 3467779999999999999999988877666554443
No 38
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=62.59 E-value=3.9 Score=42.13 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCCc
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~r 401 (436)
|+||||+.||+|.|+.+.+.-+..|+..|.++|.
T Consensus 53 l~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~ 86 (462)
T 3tqo_A 53 VVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKE 86 (462)
T ss_dssp HHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTS
T ss_pred HHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCC
Confidence 6899999999999998543234558888887774
No 39
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=51.99 E-value=7 Score=40.11 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=25.9
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCCc
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~r 401 (436)
|+||||.+||+|.++..-..-|..|+..|+++|.
T Consensus 50 l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~ 83 (461)
T 1li5_A 50 VARYLRFLGYKLKYVRNITDIDDKIIKRANENGE 83 (461)
T ss_dssp HHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCC
Confidence 7999999999999996422234568888887774
No 40
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=50.01 E-value=5.8 Score=40.04 Aligned_cols=34 Identities=6% Similarity=0.051 Sum_probs=25.9
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCCc
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~r 401 (436)
|+|+||+.||+|.|+...+.-+..|+..|.++|.
T Consensus 67 laR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~ 100 (414)
T 3c8z_A 67 VHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGI 100 (414)
T ss_dssp HHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCC
Confidence 7999999999999987533334558888877663
No 41
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=49.90 E-value=11 Score=32.65 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCceeecCCCCCChHHHHHHHhcCCcEEEecChhHHhhhcccCCcEEEE
Q 013817 366 EGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIYRV 424 (436)
Q Consensus 366 ~~la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ri~lT~d~~l~~~~~~~~~~~~~v 424 (436)
+.+...||..|..- -+ +..|--|...|...|-+|+|+|++|.+-....|.++..+
T Consensus 95 ~~i~~~l~~~G~~~-~i---~~~D~lIAAtA~~~gl~LvT~d~dF~~i~~~~~l~~~~~ 149 (156)
T 3h87_A 95 LEVQTLLADRGHHR-GP---SIPDLLIAATAELSGLTVLHVDKDFDAIAALTGQKTERL 149 (156)
T ss_dssp HHHHHHHHHTTCTT-SS---CHHHHHHHHHHHHHTCEEEESCTHHHHHHHHHCCCEEEC
T ss_pred HHHHHHHHhcCCCC-CC---ChhHHHHHHHHHHCCCEEEEeChhhhhhhhcCCCceEEe
Confidence 34566688888531 01 346777999999999999999999998877766555554
No 42
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=45.97 E-value=1.8e+02 Score=30.36 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=33.5
Q ss_pred cccHHHHHHHHcCCcccccc------cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013817 161 TKSLANICKELLDISLSKEL------QCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIF 212 (436)
Q Consensus 161 ~~gL~~Lv~~~Lg~~l~K~~------q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L 212 (436)
..||+.+++.+. .+..|+. +..+| .+.++.+.|+..||..+.+++..+
T Consensus 127 ~~SL~~~a~~f~-~~~~K~~~py~~~~~~~~---~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 127 PFPVKKIAKDFK-LTVLKGDIDYHKERPVGY---KITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp CSCHHHHHHHTT-CCCCSSCCCTTSCCCTTC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhC-CcccCCccCccccCcccc---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 469999988764 3322321 11224 477889999999999999988755
No 43
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=42.88 E-value=6.4 Score=40.98 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=15.8
Q ss_pred HHHHHHhcCCceeecCCC-CC---------ChHHHHHHHhcCCc
Q 013817 368 LAKHLRCVGIDAATPRSK-KP---------EPRELIDQTSKEKR 401 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~-~~---------~~~~~~~~a~~e~r 401 (436)
|+||||+.||+|.|+.+- ++ .+..|+..|.++|.
T Consensus 70 l~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~ 113 (501)
T 3sp1_A 70 LIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGL 113 (501)
T ss_dssp HHHHHHHHTCCEEEEEEEBCSCCC-------------------C
T ss_pred HHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCC
Confidence 699999999999998420 11 14458888877764
No 44
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=40.29 E-value=11 Score=39.09 Aligned_cols=32 Identities=6% Similarity=0.171 Sum_probs=23.6
Q ss_pred HHHHHHhcCCceeecCCCCCCh--HHHHHHHhcCCc
Q 013817 368 LAKHLRCVGIDAATPRSKKPEP--RELIDQTSKEKR 401 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~--~~~~~~a~~e~r 401 (436)
++||+|+.||+|.|+.+ .|+ -.|...|.++|.
T Consensus 38 i~Ry~r~~G~~v~~v~G--~D~hG~~ie~~a~k~g~ 71 (542)
T 3u1f_A 38 IGRYHRVKGERVFALTG--TDEHGQKVAEAAKQKQV 71 (542)
T ss_dssp HHHHHHHTTCCEEEEEE--EECCSHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCccccCc--cCcChHHHHHHHHHcCC
Confidence 69999999999999863 333 146666777764
No 45
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=40.01 E-value=25 Score=28.48 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=29.3
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCCcEEEecC-hhHHhh
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRD-AKLLRH 413 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ri~lT~d-~~l~~~ 413 (436)
|...+|..|+. .++.|.-|+..|...|-.++|+| ++|.+-
T Consensus 83 l~~~~~~~g~~------~~~~D~lIaA~A~~~~~~lvT~d~~dF~~~ 123 (132)
T 3tnd_A 83 IRAELARQGRP------VGPFDQMIAGHARSRGLIIVTNNTREFERV 123 (132)
T ss_dssp HHHHHHHHTCC------CCHHHHHHHHHHHHTTCEEEESCCHHHHTS
T ss_pred HHHHHHHCCCC------CCchHHHHHHHHHHcCCEEEECCHHHhCCC
Confidence 44445555753 14577889999999999999999 777653
No 46
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=39.91 E-value=16 Score=29.75 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCceeecCCCCCChHHHHHHHhcCCcEEEecC-hhHHhh
Q 013817 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRD-AKLLRH 413 (436)
Q Consensus 367 ~la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ri~lT~d-~~l~~~ 413 (436)
.|...||..|+. .++.|.-|+..|...|-.++|+| ++|.+-
T Consensus 83 ~l~~~~~~~g~~------~~~~D~lIaA~A~~~~~~lvT~d~~df~~~ 124 (134)
T 3zvk_A 83 ELRTELEQKGLI------IGNNDLLIASHAIAENATLVTNNIKEFKRI 124 (134)
T ss_dssp HHHHHHHHTTCC------CCHHHHHHHHHHHHHTCEEEESSTTTSCSC
T ss_pred HHHHHHHHcCCC------CCccHHHHHHHHHHCCCEEEECCHHHhcCC
Confidence 455566666763 13467889999999999999999 777653
No 47
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=37.16 E-value=74 Score=32.16 Aligned_cols=111 Identities=19% Similarity=0.134 Sum_probs=59.0
Q ss_pred HHhhCCCCceEEEEehHHhHHHHHhhcccCCCccC----cc-----CCCceeeHHHHHHHhhcccCCCCCCcCcccHHHH
Q 013817 97 KELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIG----FD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANI 167 (436)
Q Consensus 97 ~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~----~~-----~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~L 167 (436)
..+..+.+ ..||||+-.|+..+.+.|= |.-|. |. ....++| |...+...... .. ....+|.+|
T Consensus 275 ~~L~~s~K-piVGHN~llDl~~l~~~F~--~pLP~~~~eFk~~i~~lFP~i~D-TK~la~~~~~~--~~--~~~~sL~~l 346 (430)
T 2a1r_A 275 HAIANSGK-LVIGHNMLLDVMHTVHQFY--CPLPADLSEFKEMTTCVFPRLLD-TKLMASTQPFK--DI--INNTSLAEL 346 (430)
T ss_dssp HHHHHHCC-EEEESSCHHHHHHHHHHHT--CCCCSSHHHHHHHHHHHCSSEEE-HHHHHTSTTTT--TT--CSCCSHHHH
T ss_pred HHHHhCCC-ceEechhHHHHHHHHHHhc--cCCCCCHHHHHHHHHHHCCceee-hHHhhhccchh--hc--cCCCCHHHH
Confidence 33444444 4599999999998876642 21110 00 0135889 65443221110 01 135789998
Q ss_pred HHHHcCCcc--ccc---ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013817 168 CKELLDISL--SKE---LQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (436)
Q Consensus 168 v~~~Lg~~l--~K~---~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~~ 218 (436)
.+.+-..+. ++- .+..... -..++.+-|+.||+.+-.++-.|...|..
T Consensus 347 ~~~l~~~~~~~p~i~~~~~~~~y~---~~~~~~HeAGyDa~mTG~vFi~l~~~l~~ 399 (430)
T 2a1r_A 347 EKRLKETPFNPPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYLGS 399 (430)
T ss_dssp HHHTTSTTCCCCCEEECTTCCCC--------CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhCCCCCCeeecCCCccccc---cCCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 776543221 111 0111110 11233455999999999999999987743
No 48
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=32.77 E-value=95 Score=27.44 Aligned_cols=33 Identities=18% Similarity=0.048 Sum_probs=22.2
Q ss_pred hHHHHHHHhhC----CCCceEEEEehHHhHHHHHhhc
Q 013817 91 SIWELLKELFV----SPDILKLGFKFKQDLIYLSSTF 123 (436)
Q Consensus 91 ~~~~~L~~lLe----~~~i~KVgh~~k~Dl~~L~~~~ 123 (436)
++...+.+++. ..+..-||||+.+|...|.+.+
T Consensus 87 ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~ 123 (186)
T 3tr8_A 87 EAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYM 123 (186)
T ss_dssp HHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHH
Confidence 34455556663 1234559999999999998764
No 49
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=32.76 E-value=16 Score=38.38 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=24.3
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCCc
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~r 401 (436)
+||+||+.||+|.++...+.-...|...|.++|.
T Consensus 55 laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~ 88 (564)
T 3kfl_A 55 LGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGV 88 (564)
T ss_dssp HHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTC
T ss_pred HHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCC
Confidence 7999999999999987422223346667766653
No 50
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=32.25 E-value=16 Score=37.64 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=23.4
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCC
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ 400 (436)
++|++|+.||+|.++.+.+.-...|...|.++|
T Consensus 41 l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 73 (524)
T 2x1l_A 41 IARFKRLDGYDVRYLTGTDVHGQKMAETAAKEG 73 (524)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHhcCCceeeeCCcCcccHHHHHHHHHcC
Confidence 699999999999998753222334666666655
No 51
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.00 E-value=34 Score=29.58 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=26.6
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCC
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ 400 (436)
++..||..||++.|.+. ....+++++.|++++
T Consensus 38 va~~l~~~G~eVi~lG~-~~p~e~lv~aa~~~~ 69 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGL-RQTPEQVAMAAVQED 69 (161)
T ss_dssp HHHHHHHTTCEEECCCS-BCCHHHHHHHHHHTT
T ss_pred HHHHHHHCCCEEEECCC-CCCHHHHHHHHHhcC
Confidence 69999999999999974 467778888887654
No 52
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=31.13 E-value=18 Score=37.63 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=22.8
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCC
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ 400 (436)
+||+||+.||+|.++...+.-+..|...|.++|
T Consensus 54 laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g 86 (536)
T 4dlp_A 54 MARFQRLNGMDVYFLTGTDEHGIKMLQSARKEG 86 (536)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHhcCCcEEEecCcCCcchHHHHHHHHcC
Confidence 799999999999998643222344666665544
No 53
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=30.34 E-value=17 Score=30.52 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=26.8
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCCc
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR 401 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~r 401 (436)
++..||..||++.|++. ....+++++.|++++-
T Consensus 23 v~~~l~~~G~~Vi~lG~-~~p~e~~v~~a~~~~~ 55 (137)
T 1ccw_A 23 LDHAFTNAGFNVVNIGV-LSPQELFIKAAIETKA 55 (137)
T ss_dssp HHHHHHHTTCEEEEEEE-EECHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEECCC-CCCHHHHHHHHHhcCC
Confidence 58999999999999975 5677888888876543
No 54
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=29.67 E-value=17 Score=37.29 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=22.5
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCC
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ 400 (436)
++|++|+.||+|.++.+.+.-...|...|.++|
T Consensus 32 ~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 64 (500)
T 2d5b_A 32 LARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64 (500)
T ss_dssp HHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHT
T ss_pred HHHHHHcCCCceeeecccCCchHHHHHHHHHcC
Confidence 699999999999998643212234555565554
No 55
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=29.17 E-value=38 Score=27.21 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCceeecCCCCCChHHHHHHHhcCCcEEEecC-hhHHhh
Q 013817 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRD-AKLLRH 413 (436)
Q Consensus 367 ~la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ri~lT~d-~~l~~~ 413 (436)
.+..+++..|.. .+..|.-|+..|...|..++|+| ++|.+.
T Consensus 88 ~l~~~~~~~g~~------~~~~D~liaA~A~~~~~~lvT~d~~df~~~ 129 (139)
T 2h1c_A 88 QIRSYAKTHGKE------IAAADGYIAATAKQHSLTVATRDTGSFFAA 129 (139)
T ss_dssp HHHHHHHTTTCC------CCHHHHHHHHHHHHHTCEEECSCCHHHHHT
T ss_pred HHHHHHHHcCCC------CCccHHHHHHHHHHcCCeEEECCHHHHhhC
Confidence 355555555631 14567789999999999999999 777654
No 56
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=28.20 E-value=71 Score=32.98 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=58.1
Q ss_pred hCCCCceEEEEehHHhHHHHHhhcccCCCccC----cc-----CCCceeeHHHHHHHhhcccCCCCCCcCcccHHHHHHH
Q 013817 100 FVSPDILKLGFKFKQDLIYLSSTFCSQGCDIG----FD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (436)
Q Consensus 100 Le~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~----~~-----~~~~v~Dlt~La~yLl~~~~~~~~~~~~~gL~~Lv~~ 170 (436)
|.+.+...||||+-.|+..|...|- |--|. |. ....++| |...+...... .. ....+|..|.+.
T Consensus 272 L~~~~kpiVgHN~l~Dl~~l~~~F~--~pLP~~~~eFk~~i~~lFP~i~D-TK~la~~~~~~--~~--~~~~~L~~l~~~ 344 (507)
T 3d45_A 272 IANSGKLVVGHNMLLDVMHTIHQFY--CPLPADLNEFKEMAICVFPRLLD-TKLMASTQPFK--DI--INNTSLAELEKR 344 (507)
T ss_dssp HHHHCCEEEESSCHHHHHHHHHHHT--CSCCSSHHHHHHHHHHHCSCEEE-HHHHTTSTTHH--HH--CCCCCHHHHHHH
T ss_pred HHhCCCeEEEechHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhCCceeE-hHhhhhcCccc--cc--cCCCCHHHHHHH
Confidence 3334567799999999999877652 21110 00 0024889 65433221000 00 125689999887
Q ss_pred HcCCc--ccc---cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013817 171 LLDIS--LSK---ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (436)
Q Consensus 171 ~Lg~~--l~K---~~q~sdW~~RPL~~~ql~YAA~DA~~Ll~L~~~L~~~L~ 217 (436)
+-..+ .+. ..+...+.. .....+-|+.||+.+-.++-.|...|.
T Consensus 345 l~~~~~~~p~i~~~~~~~~y~~---~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 345 LKETPFDPPKVESAEGFPSYDT---ASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp TTSTTCCCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccCCCCCeEEeccccccccc---CCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 63221 111 011112211 122234499999999999999987774
No 57
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=28.13 E-value=45 Score=30.26 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=30.8
Q ss_pred cHH--HHHHHHhcCCceeecCCCCCChHHHHHHHhcCC--cEEE
Q 013817 365 VEG--LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK--RVLL 404 (436)
Q Consensus 365 l~~--la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~--ri~l 404 (436)
+|+ ++..||..||++.|++. +...+++++.|++++ -|.|
T Consensus 107 iG~~iv~~~l~~~G~~Vi~LG~-~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 107 IGHRLVTTMLGANGFQIVDLGV-DVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp HHHHHHHHHHHHTSCEEEECCS-SCCHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHHHHHHCCCeEEEcCC-CCCHHHHHHHHHHcCCCEEEE
Confidence 554 69999999999999985 567888988887664 4566
No 58
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=27.92 E-value=20 Score=38.92 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=23.3
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCC
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ 400 (436)
++||+|+.||+|.|+...+.-...|...|.++|
T Consensus 32 iaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G 64 (722)
T 1rqg_A 32 FVRYLRLKGEDVVFICGTDEHGTPISFRALKEG 64 (722)
T ss_dssp HHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHT
T ss_pred HHHHHHhcCCceEecceeCCCCHHHHHHHHHcC
Confidence 699999999999999753222233666666665
No 59
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=26.92 E-value=21 Score=36.61 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=22.4
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCC
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ 400 (436)
++||+|+.||+|.++.+.+.-...|...|.++|
T Consensus 34 ~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 66 (497)
T 2csx_A 34 IARYYRLRDYDVFFLTGTDEHGLKIQKKAEELG 66 (497)
T ss_dssp HHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSS
T ss_pred HHHHHHhcCCceeeecccCCCcHHHHHHHHHcC
Confidence 699999999999998643212233555555554
No 60
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=26.31 E-value=49 Score=37.53 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=40.3
Q ss_pred cHHHHHHHHcCC-cccccccc--cCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013817 163 SLANICKELLDI-SLSKELQC--SDWSNRPLT---EEQKNYAAIDAHCLIEIFNIFQVKVAQK 219 (436)
Q Consensus 163 gL~~Lv~~~Lg~-~l~K~~q~--sdW~~RPL~---~~ql~YAA~DA~~Ll~L~~~L~~~L~~~ 219 (436)
||.+++.-++|. +++|+... ...+...+. .+-+.|+|.||.+++++|..+-+...+.
T Consensus 288 SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~er 350 (1172)
T 3ikm_A 288 SLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLER 350 (1172)
T ss_dssp HHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 799999999997 88886432 122222221 4568999999999999999999877654
No 61
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=26.20 E-value=22 Score=37.05 Aligned_cols=33 Identities=6% Similarity=0.020 Sum_probs=21.8
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCC
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ 400 (436)
|+|+||+.||+|.++...+.-...|...|.++|
T Consensus 47 laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g 79 (560)
T 3h99_A 47 WVRYQRMRGHEVNFICADDAHGTPIMLKAQQLG 79 (560)
T ss_dssp HHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHT
T ss_pred HHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhC
Confidence 799999999999998742212223555555443
No 62
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=23.13 E-value=45 Score=28.20 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=25.9
Q ss_pred CChHHHHHHHhcCCcEEEecChhHHhhhccc
Q 013817 387 PEPRELIDQTSKEKRVLLTRDAKLLRHQYLI 417 (436)
Q Consensus 387 ~~~~~~~~~a~~e~ri~lT~d~~l~~~~~~~ 417 (436)
+.|.-++..|...|..|+|.|++|.+.+...
T Consensus 123 ~~Dal~lA~A~~~~~~LvT~D~~l~~~a~~~ 153 (156)
T 2fe1_A 123 VYDAAYVALAEKIGGKLLTLDRQLAEKFPAL 153 (156)
T ss_dssp HHHHHHHHHHHHHTCEEECSCHHHHHHCTTT
T ss_pred HHHHHHHHHHHHcCCCEEeCCHHHHHHHHHc
Confidence 3677789999999999999999999876543
No 63
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.07 E-value=42 Score=28.96 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=29.2
Q ss_pred ChHHHHHHHhcCCcEEEecChhHHhhhcccCCcEE
Q 013817 388 EPRELIDQTSKEKRVLLTRDAKLLRHQYLIKNQIY 422 (436)
Q Consensus 388 ~~~~~~~~a~~e~ri~lT~d~~l~~~~~~~~~~~~ 422 (436)
.|..++..|.+.+.+++|.|..+.+.+...|..+.
T Consensus 85 ~D~~lIaLA~~l~~~lvT~D~~l~~vA~~~Gv~v~ 119 (165)
T 2lcq_A 85 ADIEVLALAYELKGEIFSDDYNVQNIASLLGLRFR 119 (165)
T ss_dssp HHHHHHHHHHHHTCCEECCCHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhHHHhCCeEEcCcHHHHHHHHHCCCeEE
Confidence 57789999999999999999999988877665443
No 64
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=22.95 E-value=1.1e+02 Score=25.16 Aligned_cols=41 Identities=15% Similarity=0.030 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCceeecCCCCCChHHHHHHHhcCCcEEEecCh-hHHhh
Q 013817 367 GLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKRVLLTRDA-KLLRH 413 (436)
Q Consensus 367 ~la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ri~lT~d~-~l~~~ 413 (436)
.+..+++..|.- .++.|.-|+..|...|-.++|+|. +|.+-
T Consensus 82 ~l~~~~~~~g~~------~~~~D~lIaA~A~~~~~~lvT~D~kdf~~i 123 (149)
T 1v96_A 82 QIEANLIKKEIT------LDMEDIITATTAIYTNSLLVTDDPKRYEPI 123 (149)
T ss_dssp HHHHHHHHTTCC------CCHHHHHHHHHHHHHTCEEEESCHHHHGGG
T ss_pred HHHHHHHHCCCC------CCHhHHHHHHHHHHcCCEEEECCHHHHhhh
Confidence 355556666621 134677789999999999999995 67554
No 65
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=22.70 E-value=50 Score=36.60 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=22.8
Q ss_pred HHHHHHhcCCceeecCCCCCChHHHHHHHhcCC
Q 013817 368 LAKHLRCVGIDAATPRSKKPEPRELIDQTSKEK 400 (436)
Q Consensus 368 la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~ 400 (436)
++||+|+.||+|.|+...+.-.-.+...|.++|
T Consensus 62 l~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g 94 (878)
T 2v0c_A 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFG 94 (878)
T ss_dssp HHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTT
T ss_pred HHHHHHhcCCceEeecccCcccHHHHHHHHHcC
Confidence 799999999999999753322233555555555
No 66
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=22.00 E-value=67 Score=31.80 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=39.8
Q ss_pred CccHHHHHHHHhcCCceeecCCCCCChHHHHHHHhcCCc-EEEecChhHHhhh
Q 013817 363 VMVEGLAKHLRCVGIDAATPRSKKPEPRELIDQTSKEKR-VLLTRDAKLLRHQ 414 (436)
Q Consensus 363 ~~l~~la~~LR~~G~d~~~~~~~~~~~~~~~~~a~~e~r-i~lT~d~~l~~~~ 414 (436)
.|+.-+-+.|+.+|+..+.... ..|.+|...|+...- +++|.|.+++-..
T Consensus 135 ~~~~~~~~lL~~~Gi~~i~apg--EADd~iA~La~~g~~~~iiS~D~Dll~~g 185 (379)
T 1ul1_X 135 QHNDECKHLLSLMGIPYLDAPS--EAEASCAALVKAGKVYAAATEDMDCLTFG 185 (379)
T ss_dssp SCHHHHHHHHHHHTCCEEECSS--CHHHHHHHHHHHTSSSEEECSCTHHHHTT
T ss_pred HHHHHHHHHHHHcCCCeecCCC--cHHHHHHHHHhcCCeEEEEecCcCccccc
Confidence 5677889999999999998863 467778888876544 4889999999764
Done!