BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013818
(436 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp.
japonica GN=CAO PE=2 SV=1
Length = 541
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/434 (81%), Positives = 392/434 (90%), Gaps = 3/434 (0%)
Query: 1 MLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60
M+LH KVVEVLNPLAR++KSIGT++KELAELQE+LA+AH QVH+SE RV++ALDKLA ME
Sbjct: 101 MVLHNKVVEVLNPLAREFKSIGTLRKELAELQEELAKAHNQVHLSETRVSSALDKLAQME 160
Query: 61 ALVNDRLLQDRHTSGTDQTCAS--PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 118
LVNDRLLQD +S + C S PSTS S +V K PR+SLNVSGPVQPYN LKNF
Sbjct: 161 TLVNDRLLQDGGSSASTAECTSLAPSTSSAS-RVVNKKPPRRSLNVSGPVQPYNPSLKNF 219
Query: 119 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 178
W+PVAFS+DLKDDTMVP DCFEE WVIFRGKDG PGCV NTCAHRACPLHLGSVNEGRIQ
Sbjct: 220 WYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQ 279
Query: 179 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 238
CPYHGWEYSTDGKCEKMPST++ NV+I+SLPCFEQEGM+WIWPG++PP +TIP LLPPSG
Sbjct: 280 CPYHGWEYSTDGKCEKMPSTKMLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSG 339
Query: 239 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 298
F IHAEIVMELP+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTP+SGLQGYWD
Sbjct: 340 FTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWD 399
Query: 299 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 358
PYPIDMEFRPPCMVLSTIGISKPGKLEG++T+QC+THLHQLH+CLPSSR KTRLLYRMSL
Sbjct: 400 PYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRMSL 459
Query: 359 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 418
DFA +KHVPFM LW HFAE+VLNEDLRLVLGQQERM NGANVWN PV YDKLG+RYRL
Sbjct: 460 DFAPWIKHVPFMHILWSHFAEKVLNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRYRL 519
Query: 419 WRDALEKGAKQLPF 432
WRDA+E+G +LPF
Sbjct: 520 WRDAIERGVDRLPF 533
>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=CAO PE=1 SV=1
Length = 536
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/432 (78%), Positives = 386/432 (89%)
Query: 1 MLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60
M+LH+KVV+VLNPLAR+YKSIGT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME
Sbjct: 103 MILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHME 162
Query: 61 ALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWF 120
LVNDRLL R + D+ +S + S LD K KSLNVSGPV PY+ LKNFW+
Sbjct: 163 ELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWY 222
Query: 121 PVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP 180
PVAF+ DLK DTMVP +CFE+PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCP
Sbjct: 223 PVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCP 282
Query: 181 YHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFE 240
YHGWEYSTDG+C+KMPST+L VKIKSLPC EQEGMIWIWPGDEPP +P L PPSGF
Sbjct: 283 YHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFL 342
Query: 241 IHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPY 300
IHAE+VM+LP+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWDPY
Sbjct: 343 IHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWDPY 402
Query: 301 PIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDF 360
PIDMEF+PPC+VLSTIGISKPGKLEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSLDF
Sbjct: 403 PIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDF 462
Query: 361 ASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWR 420
A +LK++PFM++LWRHFAEQVLNEDLRLVLGQQERM NGAN+WNLPV YDKLGVRYRLWR
Sbjct: 463 APILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWR 522
Query: 421 DALEKGAKQLPF 432
+A+++G +LPF
Sbjct: 523 NAVDRGDDKLPF 534
>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas
reinhardtii GN=CAO PE=2 SV=2
Length = 645
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/470 (44%), Positives = 286/470 (60%), Gaps = 51/470 (10%)
Query: 4 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM--EA 61
+ KV E L+ AR+ ++G ++ +L L+ +AQA ++ ++++RV L ++ + EA
Sbjct: 143 NRKVEESLSEEAREKTAVGDLRDQLESLRAQVAQAQERLAMTQSRVEQNLQRVNELKAEA 202
Query: 62 LVNDRLLQDRHTSGTDQTCASPST---------------------------SKQSLDIVK 94
+R+ + ++ + ST + + V
Sbjct: 203 TTLERMRKASDLDIKERERIAISTVAAKGPASSSSSAAAVSAPATSATLTVERPAATTVT 262
Query: 95 GKLPRKSLNVSGPVQPYNTR------------------LKNFWFPVAFSTDLKDDTMVPF 136
++P S P ++ L+NFW+P FS L DT+VPF
Sbjct: 263 QEVPSTSYGTPVDRAPRRSKAAIRRSRGLESSMEIEEGLRNFWYPAEFSARLPKDTLVPF 322
Query: 137 DCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 196
+ F EPWV+FR + G P C+++ CAHR CPL LG V EG++ CPYHGWE++ DG C KMP
Sbjct: 323 ELFGEPWVMFRDEKGQPSCIRDECAHRGCPLSLGKVVEGQVMCPYHGWEFNGDGACTKMP 382
Query: 197 STQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL-PPSGFEIHAEIVMELPIEHG 254
ST RNV + +LPC E++G IW+WPGD P T+P PP GF IHAEI++++P+EHG
Sbjct: 383 STPFCRNVGVAALPCAEKDGFIWVWPGDGLPAETLPDFAQPPEGFLIHAEIMVDVPVEHG 442
Query: 255 LLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLS 314
LL++NLLDLAHAPFTHTSTFA+GW VP VKF L G+WDPYPIDM F+PPCM LS
Sbjct: 443 LLIENLLDLAHAPFTHTSTFARGWPVPDFVKFHA-NKALSGFWDPYPIDMAFQPPCMTLS 501
Query: 315 TIGISKPGK-LEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYL 373
TIG+++PGK + G QC HLHQLHVC+PS + TRLLYRMSLDF ++HVPF+ +
Sbjct: 502 TIGLAQPGKIMRGVTASQCKNHLHQLHVCMPSKKGHTRLLYRMSLDFLPWMRHVPFIDRI 561
Query: 374 WRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 423
W+ A QVL EDL LVLGQQ+RM G + W+ P YDKL VRYR WR+ +
Sbjct: 562 WKQVAAQVLGEDLVLVLGQQDRMLRGGSNWSNPAPYDKLAVRYRRWRNGV 611
>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina
GN=CAO PE=2 SV=1
Length = 463
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/444 (45%), Positives = 273/444 (61%), Gaps = 42/444 (9%)
Query: 24 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA----LVNDRL-----------L 68
M+ +L LQ+++++A ++ SEARVA L ++ ++A L RL +
Sbjct: 1 MQSKLLGLQDEISEARDKLRTSEARVAQNLKRVDELKAEAASLERMRLASSSSTDSTVSI 60
Query: 69 QDRHTSGTDQTCASPSTSKQS--LDIVKGK----------LPRKSLNVSGPVQPYNTR-- 114
R + T + P ++ V+G +P+ S V +P ++R
Sbjct: 61 ASRGGAAVAATTSVPDHVEREGIQSRVRGSGMASTSYPSHVPQPSQAVRRGPKPKDSRRL 120
Query: 115 ---------LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 165
L+NFW+P F+ L+ MVPFD F PWV+FR + P C++++CAHRAC
Sbjct: 121 RSSLELEDGLRNFWYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEHSAPTCIKDSCAHRAC 180
Query: 166 PLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL-RNVKIKSLPCFEQEGMIWIWPGDE 224
PL LG V G +QCPYHGWE+ G C KMPST++ V + +LPC E++G +W+WPGD
Sbjct: 181 PLSLGKVINGHVQCPYHGWEFDGSGACTKMPSTRMCHGVGVAALPCVEKDGFVWVWPGDG 240
Query: 225 PPTATIPCLL-PPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSL 283
PP P PP+G+++HAEI++++P+EHGLL++NLLDLAHAPFTHT+TFA+GW +P
Sbjct: 241 PPPDLPPDFTAPPAGYDVHAEIMVDVPVEHGLLMENLLDLAHAPFTHTTTFARGWPIPEA 300
Query: 284 VKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGK-LEGQNTRQCATHLHQLHVC 342
V+F L G WDPYPI M F PPC+ LSTIG+S+PGK + G +C HLHQLHVC
Sbjct: 301 VRFHA-TKMLAGDWDPYPISMSFNPPCIALSTIGLSQPGKIMRGYKAEECKRHLHQLHVC 359
Query: 343 LPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANV 402
+PS TRLLYRMSLDF KHVPF+ LW+ A QVL EDL LVLGQQ RM G +
Sbjct: 360 MPSKEGHTRLLYRMSLDFWGWAKHVPFVDVLWKKIAGQVLGEDLVLVLGQQARMIGGDDT 419
Query: 403 WNLPVGYDKLGVRYRLWRDALEKG 426
W P+ YDKL VRYR WR+ + G
Sbjct: 420 WCTPMPYDKLAVRYRRWRNMVADG 443
>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2
SV=1
Length = 539
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 151/334 (45%), Gaps = 39/334 (11%)
Query: 119 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 178
W+P+ + ++ +D + ++ V+++ +G C ++ C HR L G + +GR++
Sbjct: 88 WYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLE 147
Query: 179 CPYHGWEYSTDGKCEKMP----STQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 233
C YHGW++ +GKC K+P S ++ + +K+ + +G++W+W + P P
Sbjct: 148 CLYHGWQFEGEGKCVKIPQLPASAKIPKAACVKTYEVKDSQGVVWVWMSTKTPPN--PEK 205
Query: 234 LP-------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLV 284
LP P F+I ELP +H +LL+NL+D AH P +H T AK LV
Sbjct: 206 LPWFENFARPGFFDI--STTHELPYDHSILLENLMDPAHVPISHDRTDFTAKREDAQPLV 263
Query: 285 KFLTPAS--GLQGYWDPYPID------MEFRPPCMVLSTIGISKPGKLEGQNTRQCATHL 336
+T S G G W + F PC++ + + EG++ + +
Sbjct: 264 FEVTERSNRGFAGTWGREKEGGKGSNLLRFDAPCVLQNN------REFEGKDGVK--NYF 315
Query: 337 HQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQE-R 395
L +C P+ + K+ L+ R + S L V Q+ W A +V +D+ + Q E
Sbjct: 316 SGLFLCRPTGQGKSMLIVRFGVTKRSPLVSV-LPQWFWHQNACKVFEQDMGFLSSQNEVL 374
Query: 396 MNNGANVWNLPVGY---DKLGVRYRLWRDALEKG 426
M +L + D YR W D + G
Sbjct: 375 MKEKVPTKDLYLNLKSSDTWVAEYRKWMDKVGHG 408
>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1
Length = 553
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 36/332 (10%)
Query: 119 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 178
W+P+ + ++ D + +++ V+FR + C ++ C HR L G + +GR++
Sbjct: 103 WYPLYLTKNVPHDAPLGLKVYDKNIVLFRDGNDQFQCYEDRCPHRLAKLSEGQLIDGRLE 162
Query: 179 CPYHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP--TATIP 231
C YHGW++ +GKC K+P ++ +K+ + +G++W+W + P + IP
Sbjct: 163 CLYHGWQFEGEGKCVKIPQLPADAKIPKSACVKTYEVRDSQGVLWVWMSRKTPPNVSKIP 222
Query: 232 CL--LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLVKFL 287
GF+ ELP +H +LL+NL+D AH P +H T AK +L +
Sbjct: 223 WFENFARPGFQ-DISTTHELPYDHSILLENLMDPAHVPISHDRTDWSAKREDAQALGFEV 281
Query: 288 TPAS--GLQGYW-----DPYPIDMEFRPPCMVLSTIGI-SKPGKLEGQNTRQCATHLHQL 339
T + G G+W P + F PC++ + I K G++ H L
Sbjct: 282 TERTDRGFAGWWGREKDGSKPNFLRFEAPCVLQNNREIVDKNGEI---------NHFSGL 332
Query: 340 HVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQ-----QE 394
+C P+ + K+ L+ R S L + F ++ + A +V +D+ + Q +E
Sbjct: 333 FLCRPTGQGKSMLIVRFGATKRSPLIKL-FPEWYFHQNASKVFEQDMGFLSSQNEILLKE 391
Query: 395 RMNNGANVWNLPVGYDKLGVRYRLWRDALEKG 426
++ NL D YR W D + G
Sbjct: 392 KVPTKELYLNLKSS-DTWVAEYRKWMDKVGHG 422
>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain ATCC 19151) GN=vanA PE=3 SV=1
Length = 329
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 39/254 (15%)
Query: 141 EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL 200
E VI+RG +++ C HR PL LGS+ +G++ C YHG DG+ MP+ ++
Sbjct: 5 ERMVIYRGAGQRVAALEDFCPHRGAPLSLGSIQDGKLVCGYHGLVMDCDGRTASMPAQRV 64
Query: 201 RNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFE-----IHAEIVMELPIEHG 254
+ I++ P E+ G IW+WPGD P L+P + + + + ++
Sbjct: 65 QAFPCIRAFPAQERHGFIWVWPGD--AALADPALIPHLEWAENPAWAYGGGLYHIACDYR 122
Query: 255 LLLDNLLDLAHAPFTHTST------------------------FAKGWSVPSLVKFLTPA 290
L++DNL+DL H + H S+ F +G P +
Sbjct: 123 LMIDNLMDLTHETYVHASSIGQKEIDEAPVSTRVEGDRLITGRFMEGILAPPFWRAALRG 182
Query: 291 SGLQGYWDPYPIDM----EFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSS 346
+GL D P+D F PP VL +G++ G+ C + P +
Sbjct: 183 NGLA---DDVPVDRWQICRFTPPSHVLIEVGVAHAGRGGYDAPADCKASSIVVDFITPET 239
Query: 347 RKKTRLLYRMSLDF 360
+ M+ F
Sbjct: 240 DTSIWYFWGMARSF 253
>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain HR199 / DSM 7063) GN=vanA PE=3 SV=1
Length = 354
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 103/239 (43%), Gaps = 34/239 (14%)
Query: 116 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 175
KN W+ VA + D D + E V +RG +G V++ C HR PL LG V +G
Sbjct: 4 KNAWY-VACTPDEIADKPLGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRDG 62
Query: 176 RIQCPYHGWEYSTDGKCEKMPSTQLRNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLL 234
++ C YHG E +GK MP +++ IKS E+ G IW+WPGD P L+
Sbjct: 63 KLICGYHGLEMGCEGKTLAMPGQRVQGFPCIKSYAVEERYGFIWVWPGDR--ELADPALI 120
Query: 235 PPSGFEIHAEI-----VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVK---- 285
+ + E + + ++ L++DNL+DL H + H S+ + + V
Sbjct: 121 HHLEWADNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIGQKEIDEAPVSTRVE 180
Query: 286 -----------------FLTPASGLQGYWDPYPIDM----EFRPPCMVLSTIGISKPGK 323
F A G D P+D F PP VL +G++ GK
Sbjct: 181 GDTVITSRYMDNVMAPPFWRAALRGNGLADDVPVDRWQICRFAPPSHVLIEVGVAHAGK 239
>sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1
OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1
Length = 347
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 115 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 174
++N W+ A+ T++ + + EP +++R G ++N C HR+ PLH+G
Sbjct: 3 IRNCWYVAAWDTEIPAEGLFHRTLLNEPVLLYRDTQGRVVALENRCCHRSAPLHIGRQEG 62
Query: 175 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVK--IKSLPCFEQEGMIWIWPGDEPPTATIPC 232
++C YHG +++ G C ++P + K IKS P E+ ++WIW GD P P
Sbjct: 63 DCVRCLYHGLKFNPSGACVEIPGQEQIPPKTCIKSYPVVERNRLVWIWMGD--PARANPD 120
Query: 233 LLPPSGFEIHAEIVME-----LPIEHGLLLDNLLDLAHAPFTHTSTFA 275
+ + E M+ + L++DNLLD H + H +T
Sbjct: 121 DIVDYFWHDSPEWRMKPGYIHYQANYKLIVDNLLDFTHLAWVHPTTLG 168
>sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas
testosteroni GN=cbaA PE=3 SV=1
Length = 432
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 13/177 (7%)
Query: 106 GPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 164
G P ++ +W P ST+L+ + V E V FR G G + + C HR
Sbjct: 14 GRGTPMGGLMREYWIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHRG 73
Query: 165 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST----QLRN-VKIKSLPCFEQEGMIWI 219
L +G V EG ++C YHGW++S +GKC MPS + +N V++ P E G++W+
Sbjct: 74 VSLFMGRVEEGGLRCVYHGWKFSAEGKCVDMPSVRPEDEFKNSVRVARYPVKEMAGVVWV 133
Query: 220 WPGDEPPTATIPCL----LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTS 272
+ G +P L LP + ++ I ++ L+ +D +H F H
Sbjct: 134 YMGTRKVLPELPRLEVLNLPENEVDV---ICLQRKSNWLQNLEGEIDTSHFNFLHVG 187
>sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur
subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5
SV=1
Length = 346
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 115 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 174
+KN W+ +TD + E V+FR DG +++ C HR PL LG V +
Sbjct: 3 VKNTWYVAGMATDCSRKPLAR-TFLNEKVVLFRTHDGHAVALEDRCCHRLAPLSLGDVED 61
Query: 175 GRIQCPYHGWEYSTDGKCEKMPSTQLR--NVKIKSLPCFEQEGMIWIWPGDEPPTAT--- 229
I+C YHG ++ G C ++P + + ++ P E+ G++WIW GD P A
Sbjct: 62 AGIRCRYHGMVFNASGACVEIPGQEQIPPGMCVRRFPLVERHGLLWIWMGD-PARANPDD 120
Query: 230 --------IPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 275
P SG+ IH + + L++DNLLD H + H +T
Sbjct: 121 IVDELWNGAPEWRTDSGY-IHYQ------ANYQLIVDNLLDFTHLAWVHPTTLG 167
>sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52,
chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1
Length = 559
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/394 (21%), Positives = 149/394 (37%), Gaps = 91/394 (23%)
Query: 119 WFPVAFSTDLKD-----------DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL 167
W+PV DL D +V +D E+ W + + +TC HR PL
Sbjct: 85 WYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKV----------MDDTCPHRLAPL 134
Query: 168 HLGSVNE-GRIQCPYHGWEYSTDGKCEKMPST--------QLRNVKIKSLPCFEQEGMIW 218
G +++ GR+QC YHGW ++ G C+ +P + + P Q +IW
Sbjct: 135 SDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEIIW 194
Query: 219 IWPGDEPPTAT---------IPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFT 269
WP +P IP L PS ++ ++P + +L++NL+D AH P+
Sbjct: 195 FWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGN--RDIPYGYDVLVENLMDPAHVPYA 252
Query: 270 HTSTF----AKGWSVPSLVK-FLTPASGLQGYW---------DPYPIDME---------- 305
H KG + + P + LQ P I+++
Sbjct: 253 HYGLMRFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNKGFFSK 312
Query: 306 -------FRPPCMVLSTIGI------SKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRL 352
F PC+ S+ P L + +C+P S ++RL
Sbjct: 313 QEWGYSNFIAPCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLSLIFICIPVSPGRSRL 372
Query: 353 LYRMSLDFASVL-KHVPFMQYLWRHFAEQVLNEDLRLV-LGQQERMNNGANVWN----LP 406
++ +F + K VP ++++ +L+ DL L+ + +++ + G W +P
Sbjct: 373 IWTFPRNFGVFIDKIVP--RWVFHIGQNTILDSDLHLLHVEERKILERGPENWQKACFIP 430
Query: 407 VGYDKLGVRYRLWRDALEKG-----AKQLPFMKP 435
D V +R W + + K PF+ P
Sbjct: 431 TKSDANVVTFRRWFNKYSEARVDWRGKFDPFLLP 464
>sp|Q52185|POBA_PSEPS Phenoxybenzoate dioxygenase subunit alpha OS=Pseudomonas
pseudoalcaligenes GN=pobA PE=2 SV=1
Length = 409
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 25/220 (11%)
Query: 98 PRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQ 157
P L+ P L+ +W PVA S D+ D + E V+FR K G PG +
Sbjct: 24 PDPQLSAVAKGTPTGEYLRRYWQPVALSADVTDRPQM-VRILGEDLVLFRDKAGRPGLLY 82
Query: 158 NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKM---PSTQLRNVKIKS--LPCFE 212
C HR L+ G V E I+C YHGW ++ DG C P LR + P E
Sbjct: 83 PRCMHRGTSLYYGHVEEAGIRCCYHGWLFAVDGTCLNQPCEPEGGLRREAARQPWYPVEE 142
Query: 213 QEGMIWIWPGDEPPTATIP-------------CLLPPSGFEIHAEIVMELPIEHGLL--L 257
+ G+++ + G +P + GF +A+ V + + + L
Sbjct: 143 RYGLVFAYMGPPEKKPVLPRYDILEDLEEGEFIEVISGGFVSYADHVEDPNVPYHWLQNW 202
Query: 258 DNLLDLAHAPFTHTS----TFAKGWSVPSLVKFLTPASGL 293
+N++D H H++ FA+ + + V F G+
Sbjct: 203 ENIMDPYHVYILHSTFSGIQFAENFKILPRVDFEAVDGGV 242
>sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=PAO PE=1 SV=1
Length = 537
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 97/229 (42%), Gaps = 31/229 (13%)
Query: 114 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSV 172
+ ++ W+PV+ DL + PF V+ F D + C HR PL G +
Sbjct: 83 KWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRL 142
Query: 173 NE-GRIQCPYHGWEYSTDGKCEKMPST-----QLRNVK------IKSLPCFEQEGMIWIW 220
+E G +QC YHGW + G C ++P + R VK IK P +G++++W
Sbjct: 143 DENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIK-FPTMVSQGLLFVW 201
Query: 221 PGD---------EPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTH- 270
P + EPP +P F I +L + L++N+ D +H F H
Sbjct: 202 PDENGWDRANSIEPP--RLPDDFDKPEFST-VTIQRDLFYGYDTLMENVSDPSHIDFAHH 258
Query: 271 --TSTFAKGWSVPSLVKFLTPASGLQGYWDPYP-IDMEFRPPCMVLSTI 316
T + +P V+ P G QG D P I +F PC ++ I
Sbjct: 259 KVTGRRDRAKPLPFKVESSGPW-GFQGANDDSPRITAKFVAPCYSMNKI 306
>sp|Q05183|PHT3_PSEPU Phthalate 4,5-dioxygenase oxygenase subunit OS=Pseudomonas putida
GN=pht3 PE=2 SV=1
Length = 439
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
Query: 110 PYNTRLKNFWFPVAFSTDLK--DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL 167
P ++ W PV ++ D T V F E V+FR DG G + C HR L
Sbjct: 18 PMGQMMRRHWTPVCLLEEVSEPDGTPVRARLFGEDLVVFRDTDGRVGVMDEYCPHRRVSL 77
Query: 168 HLGSVNEGRIQCPYHGWEYSTDGKCEKM-----PSTQLRNVKIKSLPCFEQEGMIWIWPG 222
G ++C YHGW+ DG +M S + VK + E G +W + G
Sbjct: 78 IYGRNENSGLRCLYHGWKMDVDGNVVEMVSEPAASNMCQKVKHTAYKTREWGGFVWAYMG 137
Query: 223 DEPPTATIPCLLPPS 237
P IP +PP+
Sbjct: 138 ---PQDAIPEFVPPA 149
>sp|D5IGG0|CARAA_SPHSX Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Sphingomonas sp. GN=carAa PE=1 SV=1
Length = 378
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 115 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL--HLGSV 172
+N W+PV ++++ + T VP E ++ G +Q+ C HR L +
Sbjct: 25 FRNHWYPVRLASEIAEGTPVPVKLLGEK-ILLNRVGGKVYAIQDRCLHRGVTLSDRVECY 83
Query: 173 NEGRIQCPYHGWEYS-TDGKCEKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 227
++ I C YHGW Y DG+ + S Q+ +K+ P E +G+I+++ GD PT
Sbjct: 84 SKNTISCWYHGWTYRWDDGRLVDILTNPGSVQIGRRALKTFPVEEAKGLIFVYVGDGEPT 143
Query: 228 ATIPCLLPPSGF-----EIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG 277
I + P GF IH + + + L +N D H S KG
Sbjct: 144 PLIEDV--PPGFLDENRAIHGQHRL-VASNWRLGAENGFDAGHVLIHKNSILVKG 195
>sp|Q17938|DAF36_CAEEL Cholesterol desaturase daf-36 OS=Caenorhabditis elegans GN=daf-36
PE=1 SV=2
Length = 428
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 13/194 (6%)
Query: 117 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNE 174
N W+ V S L ++ ++ + + R + G + C H ++G V +
Sbjct: 79 NGWYCVCESEKLANNQIMEITVLGQFLSLIRSESGAVYITDSYCPHIGANFNIGGRVVRD 138
Query: 175 GRIQCPYHGWEYSTD-GKCEKMPSTQLR---NVKIKSLPCFEQEGMIWIW---PGDEPPT 227
IQCP+HGW +S + GKC ++P + R K+ + PC E+ I++W G EP
Sbjct: 139 NCIQCPFHGWIFSAETGKCVEVPYDEGRIPEQAKVTTWPCIERNNNIYLWYHCDGAEPEW 198
Query: 228 ATIPCLLPPSGF-EIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLV 284
GF + E+ + +N D+AH + H S KG +
Sbjct: 199 EIPEITEITDGFWHLGGRTEHEVMCHIQEIPENGADIAHLNYLHKSAPPVTKGSDIIK-T 257
Query: 285 KFLTPASGLQGYWD 298
P +Q WD
Sbjct: 258 DLSDPQPAVQHVWD 271
>sp|P71875|KSHA_MYCTU 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium tuberculosis GN=kshA PE=1 SV=2
Length = 386
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 9/167 (5%)
Query: 113 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 172
TR W + + D + + F V+F G + C H L G+V
Sbjct: 20 TRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTV 79
Query: 173 NEGRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIW---PGDEP-P 226
+ CP+H W + DG+C+ +P + R + +S + G++++W G+ P P
Sbjct: 80 KGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDP 139
Query: 227 TATIPCLLPPSGFEIHAEIVMELPIEHGL---LLDNLLDLAHAPFTH 270
IP + + E + IE ++DN+ D+AH + H
Sbjct: 140 AVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTDMAHFFYIH 186
>sp|Q8G8B6|CARAA_PSERE Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Pseudomonas resinovorans GN=carAa PE=1 SV=1
Length = 384
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 115 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SV 172
+N W+PV FS ++ + E ++ R DG C+++ C HR L +
Sbjct: 25 FRNHWYPVMFSKEIDEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECK 83
Query: 173 NEGRIQCPYHGWEYS-TDGK-CEKM---PSTQLRNVKIKSLPCFEQEGMIWIW--PGDEP 225
+ I C YH W Y DG C+ + S Q+ K+K+ P E +G ++I+ GD P
Sbjct: 84 TKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP 143
Query: 226 PTATIPCLLPPSGFEIHAEIVMELPIEHG---LLLDNLLDLAHAPFTHTSTFAK 276
P A PP+ + EI+ + I L ++N D +H S K
Sbjct: 144 PLARD---TPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVK 194
>sp|P0ABR7|YEAW_ECOLI Putative dioxygenase subunit alpha YeaW OS=Escherichia coli (strain
K12) GN=yeaW PE=3 SV=1
Length = 374
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 119 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR- 176
W VA S++L + + V + E V+ RG+D + N C HR L G EG+
Sbjct: 47 WICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSG---EGKA 103
Query: 177 ---IQCPYHGWEYSTDG------KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 227
I CPYH W + DG CE + + ++ + E G ++I +P
Sbjct: 104 KNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFI--NMDPNA 161
Query: 228 ATIPCLLPPSGF-------EIH-----AEIVMELPIEHGLLLDNLLDLAHAPFTH 270
++ LP G E+H A P ++DN L+ H H
Sbjct: 162 TSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTPANWKNIVDNYLECYHCGPAH 216
>sp|P0ABR8|YEAW_ECO57 Putative dioxygenase subunit alpha YeaW OS=Escherichia coli O157:H7
GN=yeaW PE=3 SV=1
Length = 374
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 119 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR- 176
W VA S++L + + V + E V+ RG+D + N C HR L G EG+
Sbjct: 47 WICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSG---EGKA 103
Query: 177 ---IQCPYHGWEYSTDG------KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 227
I CPYH W + DG CE + + ++ + E G ++I +P
Sbjct: 104 KNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFI--NMDPNA 161
Query: 228 ATIPCLLPPSGF-------EIH-----AEIVMELPIEHGLLLDNLLDLAHAPFTH 270
++ LP G E+H A P ++DN L+ H H
Sbjct: 162 TSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTPANWKNIVDNYLECYHCGPAH 216
>sp|A0R4R3|KSHA_MYCS2 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=kshA PE=1 SV=1
Length = 383
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 144 VIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL--R 201
V+F G + C H L G+V + CP+H W + DGKC+ +P + R
Sbjct: 49 VVFADSKGELNVLDAYCRHMGGDLSKGTVKGDEVACPFHDWRWGGDGKCKLVPYAKRTPR 108
Query: 202 NVKIKSLPCFEQEGMIWIW---PGDEP-PTATIPCLLPPSGFEIHAEIVMELPIEHG--- 254
+ +S + G++++W G+ P P IP + E + IE
Sbjct: 109 LARTRSWHTDVRGGLLFVWHDHEGNPPQPEVRIPEIPEWHSGEWTDWKWNSMLIEGSNCR 168
Query: 255 LLLDNLLDLAHAPFTH 270
++DN+ D+AH + H
Sbjct: 169 EIIDNVTDMAHFFYIH 184
>sp|O22553|CHMO_BETVU Choline monooxygenase, chloroplastic OS=Beta vulgaris GN=CMO PE=2
SV=1
Length = 446
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 143 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP-STQLR 201
+++ R G N C HRA L GS + CPYHGW Y DG K +T+ +
Sbjct: 152 YLVSRDGQGELHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLAKASKATETQ 211
Query: 202 NVKIKSL 208
N+ K L
Sbjct: 212 NLDPKEL 218
>sp|O04121|CHMO_SPIOL Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO
PE=1 SV=1
Length = 439
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 143 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 194
+++ R +G N C HRA L GS + CPYHGW Y DG K
Sbjct: 145 YLVSRDGEGKVHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGMDGSLAK 196
>sp|Q93XE1|CHMO_AMATR Choline monooxygenase, chloroplastic OS=Amaranthus tricolor GN=CMO
PE=2 SV=1
Length = 442
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 143 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRN 202
+++ R G N C HRA L G+ + CPYHGW + DG K T+ +
Sbjct: 148 YLVCRDGQGKVHAFHNVCTHRASILACGTGKKSCFVCPYHGWVFGLDGSLMKATKTENQV 207
Query: 203 VKIKSLPCFEQEGMIW 218
K L + IW
Sbjct: 208 FDPKELGLVTLKVAIW 223
>sp|Q83K39|HCAE_SHIFL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri GN=hcaE PE=3 SV=1
Length = 453
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 196
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNSRAFTCPYHGWSYGINGELIDVP 122
>sp|Q7N4W0|HCAE_PHOLL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=hcaE PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 196
E+ V+ R K+G N C HR+ + + S N CPYHGW Y DG+ +P
Sbjct: 65 EDSVVVVRQKNGSVKAFLNQCRHRSMRVCYADSGNTRAFTCPYHGWSYGVDGRLIDVP 122
>sp|Q9LKN0|CHMO_ATRHO Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO
PE=2 SV=1
Length = 438
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 143 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 194
+++ R +G N C HRA L GS + CPYHGW Y +G K
Sbjct: 146 YLVCRDGEGKVHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGMNGSLTK 197
>sp|A8A344|HCAE_ECOHS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O9:H4 (strain HS) GN=hcaE PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 196
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q31XV2|HCAE_SHIBS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaE
PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 196
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q3YZ15|HCAE_SHISS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella sonnei (strain Ss046) GN=hcaE PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 196
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|P0ABR5|HCAE_ECOLI 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli (strain K12) GN=hcaE PE=1 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 196
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|P0ABR6|HCAE_ECO57 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O157:H7 GN=hcaE PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 196
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q0T1Y1|HCAE_SHIF8 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaE
PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 196
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q51601|CBDA_BURCE 2-halobenzoate 1,2-dioxygenase large subunit OS=Burkholderia
cepacia GN=cbdA PE=1 SV=3
Length = 465
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 130 DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYST 188
DD +V + +P +I R K G V N C+HR L N C +HGW +S
Sbjct: 69 DDYLVS-NIGRQPVIITRNKAGDVSAVINACSHRGAELCRRKQGNRSTFTCQFHGWTFSN 127
Query: 189 DGKCEKMPSTQLRN 202
GK K+ Q N
Sbjct: 128 TGKLLKVKDGQDDN 141
>sp|P23099|XYLX_PSEPU Toluate 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=xylX
PE=3 SV=1
Length = 454
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 141 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKM 195
+P I R KDG N C+HR L S N+ C +HGW +S GK K+
Sbjct: 73 QPIFITRNKDGELNAFVNACSHRGATLCRFRSGNKATHTCSFHGWTFSNSGKLLKV 128
>sp|P0C618|BNZA_PSEPU Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=bnzA
PE=3 SV=1
Length = 450
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 196
E+P V+ R KD N C HR C G N C YHGW Y T G +P
Sbjct: 76 EDPVVVVRQKDASIAVFLNQCRHRGMRICRADAG--NAKAFTCSYHGWAYDTAGNLVNVP 133
>sp|A5W4F2|BNZA_PSEP1 Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida (strain
F1 / ATCC 700007) GN=bnzA PE=1 SV=1
Length = 450
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 196
E+P V+ R KD N C HR C G N C YHGW Y T G +P
Sbjct: 76 EDPVVVVRQKDASIAVFLNQCRHRGMRICRADAG--NAKAFTCSYHGWAYDTAGNLVNVP 133
>sp|Q07944|BEDC1_PSEPU Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida
GN=bedC1 PE=1 SV=1
Length = 450
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 198
E+P V+ R KD N C HR + + N C YHGW Y T G +P
Sbjct: 76 EDPVVVVRQKDASIAVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDTAGNLINVP-- 133
Query: 199 QLRNVKIKSLPCFEQE 214
+ +S C +++
Sbjct: 134 ----YEAESFACLDKK 145
>sp|P07769|BENA_ACIAD Benzoate 1,2-dioxygenase subunit alpha OS=Acinetobacter sp. (strain
ADP1) GN=benA PE=3 SV=2
Length = 461
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 141 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 199
+P +I R ++G + N C+HR L N+ CP+HGW ++ GK K+
Sbjct: 76 QPILIARNRNGELNAMINACSHRGAQLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPS 135
Query: 200 LRNVKIKSLPCFEQEG 215
CF Q+G
Sbjct: 136 DAGYS----DCFNQDG 147
>sp|O52379|NAGG_RALSP Salicylate 5-hydroxylase, large oxygenase component OS=Ralstonia
sp. GN=nagG PE=1 SV=1
Length = 423
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 144 VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 196
++ R DG V+N CAHR C G+ + CPYH W YS G + +P
Sbjct: 75 IMVRDPDGGINVVENVCAHRGMRFCRERHGNAKD--FFCPYHQWNYSLKGDLQGVP 128
>sp|O85673|ANTDA_ACIAD Anthranilate 1,2-dioxygenase large subunit OS=Acinetobacter sp.
(strain ADP1) GN=antA PE=1 SV=1
Length = 471
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 129 KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYS 187
++ V +P ++ R G + N C HR L + N+ CP+H W Y
Sbjct: 62 NNNDFVTVQIGRQPMIVSRDGKGELHAMVNACEHRGATLTRVAKGNQSVFTCPFHAWCYK 121
Query: 188 TDGKCEKMPS 197
+DG+ K+ +
Sbjct: 122 SDGRLVKVKA 131
>sp|Q9SZR0|CHMO_ARATH Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana
GN=At4g29890 PE=2 SV=2
Length = 422
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 119 WFPVAFSTDLKDDTMVPFDCF-----EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN 173
W V +S +K+ D F + +V+ R ++G N C+H A L G+
Sbjct: 96 WQAVGYSDQIKESR----DFFTGRLGDVDFVVCRDENGKIHAFHNVCSHHASILASGNGR 151
Query: 174 EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSL 208
+ C YHGW YS G K +T++ ++ SL
Sbjct: 152 KSCFVCLYHGWTYSLSGSLVK--ATRMSGIQNFSL 184
>sp|Q8GI16|CARAC_PSERE Ferredoxin CarAc OS=Pseudomonas resinovorans GN=carAc PE=1 SV=1
Length = 107
Score = 38.5 bits (88), Expect = 0.094, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 115 LKNFWFPVAFSTDLKDDTMVPFD-CFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN 173
+ W V ++D++ T+ + P ++R D ++TC H L G+++
Sbjct: 1 MNQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYA-TEDTCTHGIASLSEGTLD 59
Query: 174 EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 219
I+CP+HG ++ C MP++ V + +EG +++
Sbjct: 60 GDVIECPFHGGAFNV---CTGMPASSPCTVPLGVFEVEVKEGEVYV 102
>sp|O52382|NDOB_RALSP Naphthalene 1,2-dioxygenase subunit alpha OS=Ralstonia sp. GN=nagAc
PE=1 SV=1
Length = 447
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 144 VIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 196
++ R DG N C HR L H + N C YHGW + ++G+ + +P
Sbjct: 63 IVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGSNGELQSVP 116
>sp|Q93SW8|UCRIB_NOSS1 Cytochrome b6-f complex iron-sulfur subunit 2 OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=petC2 PE=3 SV=1
Length = 178
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 141 EPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 198
EP + +DG P + N C H C V++ + QCP HG Y G E+ P+
Sbjct: 86 EPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQ-QFQCPCHGSRYDAQGSVERGPA- 143
Query: 199 QLRNVKIKSLPCFEQEGMIWIWPGDE 224
N +K + ++ IWI P E
Sbjct: 144 ---NRPLKLVQVQVKDDYIWISPWQE 166
>sp|Q51494|NDOB_PSEAI Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas aeruginosa
GN=ndoB PE=3 SV=1
Length = 449
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 144 VIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 196
++ R DG N C HR L H + N C YHGW + +G+ + +P
Sbjct: 65 IVSRQNDGSIRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGANGELQSVP 118
>sp|Q65SI5|RNB_MANSM Exoribonuclease 2 OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=rnb PE=3 SV=1
Length = 659
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 325 EGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK---HVPFMQYLWRHFAEQV 381
E ++T+Q LHQ + + RKK LL++ D++ VL HV ++ +R A Q+
Sbjct: 335 ENESTQQQINWLHQFALVRINWRKKHGLLFKEKPDYSFVLADNGHVREIKAEYRRIANQI 394
Query: 382 LNEDL---RLVLGQQERMNNGANVWNLPVGYDK 411
+ E + + N ++N VG+DK
Sbjct: 395 VEESMIIANICCAHYLAKNAQTGIFNTHVGFDK 427
>sp|Q93SW6|UCRIB_ANAVT Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=petC2 PE=3
SV=1
Length = 178
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 141 EPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 198
EP + +DG P + N C H C V++ + QCP HG Y G E+ P+
Sbjct: 86 EPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQ-QFQCPCHGSRYDAQGSVERGPAN 144
Query: 199 ---QLRNVKIKSLPCFEQEGMIWI--WPGDEPPTATIP 231
+L +V++K + IWI W +P T P
Sbjct: 145 RPLKLVHVQVK-------DDYIWISSWQETDPRTGEKP 175
>sp|Q52438|BPHA1_PSES1 Biphenyl dioxygenase subunit alpha OS=Pseudomonas sp. (strain
KKS102) GN=bphA1 PE=3 SV=1
Length = 458
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 140 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 196
E+P ++ R KDG N C HR + + N C YHGW Y G +P
Sbjct: 81 EDPVIMVRQKDGSIKVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDIAGNLVNVP 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,148,790
Number of Sequences: 539616
Number of extensions: 7580499
Number of successful extensions: 15744
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 15656
Number of HSP's gapped (non-prelim): 86
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)