Query 013818
Match_columns 436
No_of_seqs 366 out of 2309
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02281 chlorophyllide a oxyg 100.0 3.6E-95 8E-100 747.2 41.7 433 1-434 103-536 (536)
2 PLN00095 chlorophyllide a oxyg 100.0 4.5E-50 9.8E-55 397.3 24.9 272 111-390 65-370 (394)
3 PLN02518 pheophorbide a oxygen 100.0 1.6E-49 3.4E-54 416.3 30.2 309 110-426 82-432 (539)
4 COG4638 HcaE Phenylpropionate 100.0 6.7E-41 1.5E-45 341.0 23.1 325 78-427 4-359 (367)
5 TIGR03229 benzo_1_2_benA benzo 100.0 3.6E-38 7.9E-43 324.2 18.9 179 78-275 15-220 (433)
6 TIGR03228 anthran_1_2_A anthra 100.0 7.2E-38 1.6E-42 321.8 21.0 180 78-275 15-218 (438)
7 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 4.4E-31 9.5E-36 230.1 12.5 123 104-226 3-125 (129)
8 cd03537 Rieske_RO_Alpha_PrnD T 100.0 1.8E-30 3.8E-35 223.9 12.0 109 117-226 2-119 (123)
9 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 2E-30 4.3E-35 230.3 12.5 132 102-233 5-142 (144)
10 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 3.4E-30 7.4E-35 230.0 11.8 132 79-226 2-148 (150)
11 cd04338 Rieske_RO_Alpha_Tic55 100.0 6.4E-30 1.4E-34 224.3 12.6 115 112-226 11-130 (134)
12 cd03531 Rieske_RO_Alpha_KSH Th 100.0 4.7E-29 1E-33 213.2 12.0 109 118-226 1-111 (115)
13 cd03532 Rieske_RO_Alpha_VanA_D 100.0 1.8E-28 4E-33 209.9 11.9 110 115-225 2-113 (116)
14 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 1.3E-28 2.8E-33 217.0 11.0 113 114-226 13-134 (138)
15 cd03541 Rieske_RO_Alpha_CMO Ri 100.0 4.2E-28 9.2E-33 207.8 10.8 108 118-225 1-115 (118)
16 cd03538 Rieske_RO_Alpha_AntDO 99.9 6.1E-28 1.3E-32 214.7 11.5 127 83-226 4-144 (146)
17 cd03539 Rieske_RO_Alpha_S5H Th 99.9 8.4E-28 1.8E-32 209.4 10.3 108 119-226 1-127 (129)
18 cd03548 Rieske_RO_Alpha_OMO_CA 99.9 2E-27 4.4E-32 209.0 11.7 111 114-225 10-127 (136)
19 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 2.5E-27 5.4E-32 206.1 10.6 113 114-226 4-126 (128)
20 cd03469 Rieske_RO_Alpha_N Ries 99.9 4.6E-27 9.9E-32 201.4 9.9 107 119-225 1-115 (118)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 2.4E-26 5.2E-31 198.8 10.9 110 117-226 1-121 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 3.3E-26 7.1E-31 198.0 10.9 108 119-226 1-119 (123)
23 cd03542 Rieske_RO_Alpha_HBDO R 99.9 3.6E-25 7.9E-30 191.2 11.2 108 119-226 1-121 (123)
24 cd03528 Rieske_RO_ferredoxin R 99.9 5.4E-25 1.2E-29 182.5 10.9 96 119-219 1-97 (98)
25 cd03530 Rieske_NirD_small_Baci 99.9 1.4E-24 3.1E-29 180.1 10.9 97 119-220 1-98 (98)
26 cd03474 Rieske_T4moC Toluene-4 99.9 2.3E-24 5E-29 182.1 12.0 103 119-226 1-104 (108)
27 TIGR02377 MocE_fam_FeS Rieske 99.9 4E-24 8.6E-29 178.6 11.1 100 118-221 1-101 (101)
28 cd03529 Rieske_NirD Assimilato 99.9 1.8E-23 4E-28 175.2 10.4 96 119-219 1-102 (103)
29 cd03478 Rieske_AIFL_N AIFL (ap 99.9 1.5E-23 3.3E-28 173.0 9.6 93 121-218 2-95 (95)
30 TIGR02378 nirD_assim_sml nitri 99.9 2.5E-23 5.4E-28 174.9 10.1 99 118-221 1-105 (105)
31 PRK09965 3-phenylpropionate di 99.9 3.5E-23 7.6E-28 174.4 10.3 100 119-224 3-104 (106)
32 PF00355 Rieske: Rieske [2Fe-2 99.9 8.8E-22 1.9E-26 162.8 8.4 93 118-215 1-97 (97)
33 PF13806 Rieske_2: Rieske-like 99.9 2.4E-21 5.2E-26 162.4 9.9 98 118-220 1-104 (104)
34 PRK09511 nirD nitrite reductas 99.8 5.4E-21 1.2E-25 161.5 10.7 98 118-220 3-107 (108)
35 cd03467 Rieske Rieske domain; 99.8 6.1E-21 1.3E-25 158.2 10.4 95 119-217 1-97 (98)
36 COG2146 {NirD} Ferredoxin subu 99.8 7.7E-21 1.7E-25 159.8 10.7 101 117-221 3-105 (106)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 5.3E-21 1.2E-25 156.6 9.3 88 122-214 2-89 (91)
38 cd03476 Rieske_ArOX_small Smal 99.8 3.2E-19 6.9E-24 154.5 10.0 96 120-220 4-114 (126)
39 cd08878 RHO_alpha_C_DMO-like C 99.8 6.4E-18 1.4E-22 155.2 13.8 171 246-423 5-195 (196)
40 cd03471 Rieske_cytochrome_b6f 99.8 3.1E-18 6.7E-23 147.4 10.4 91 129-224 21-114 (126)
41 TIGR02694 arsenite_ox_S arseni 99.7 2.8E-17 6.1E-22 142.7 9.6 94 121-219 8-115 (129)
42 cd03470 Rieske_cytochrome_bc1 99.7 6.9E-17 1.5E-21 139.9 10.2 92 124-219 5-125 (126)
43 cd03473 Rieske_CMP_Neu5Ac_hydr 99.7 8.8E-17 1.9E-21 133.5 8.1 73 125-198 14-90 (107)
44 cd00680 RHO_alpha_C C-terminal 99.6 3.4E-15 7.4E-20 136.1 14.7 161 245-423 3-186 (188)
45 PRK13474 cytochrome b6-f compl 99.6 3.5E-15 7.6E-20 136.8 9.9 88 129-221 73-163 (178)
46 cd08885 RHO_alpha_C_1 C-termin 99.6 1E-13 2.2E-18 128.3 15.6 163 244-423 3-188 (190)
47 cd08887 RHO_alpha_C_3 C-termin 99.5 2.7E-13 5.8E-18 124.6 13.5 161 245-423 4-183 (185)
48 TIGR01416 Rieske_proteo ubiqui 99.5 1.2E-13 2.6E-18 126.2 10.5 93 118-215 40-168 (174)
49 cd08883 RHO_alpha_C_CMO-like C 99.5 5.8E-13 1.3E-17 121.9 14.8 160 244-423 3-173 (175)
50 cd08884 RHO_alpha_C_GbcA-like 99.4 1.9E-12 4E-17 121.7 15.0 167 238-422 7-202 (205)
51 cd08886 RHO_alpha_C_2 C-termin 99.4 9.8E-13 2.1E-17 121.3 12.7 160 244-422 3-181 (182)
52 PF00848 Ring_hydroxyl_A: Ring 99.3 3.9E-12 8.4E-17 117.4 6.8 159 246-423 11-206 (209)
53 cd03475 Rieske_SoxF_SoxL SoxF 99.3 1.9E-11 4.1E-16 110.2 10.3 68 148-219 72-158 (171)
54 COG0723 QcrA Rieske Fe-S prote 99.0 3.9E-10 8.4E-15 103.7 6.5 79 140-222 83-168 (177)
55 PF08417 PaO: Pheophorbide a o 98.9 3.3E-09 7.2E-14 87.0 8.2 88 306-404 1-91 (92)
56 cd08880 RHO_alpha_C_ahdA1c-lik 98.9 2.9E-09 6.4E-14 101.3 7.9 32 245-276 4-37 (222)
57 cd08882 RHO_alpha_C_MupW-like 98.8 4.5E-08 9.6E-13 94.5 10.4 85 338-423 146-241 (243)
58 KOG1671 Ubiquinol cytochrome c 98.7 1.1E-08 2.4E-13 92.9 5.3 75 124-198 91-191 (210)
59 TIGR03171 soxL2 Rieske iron-su 98.7 3.6E-08 7.7E-13 96.5 7.1 69 148-220 173-276 (321)
60 cd08879 RHO_alpha_C_AntDO-like 98.6 1.4E-07 3E-12 90.8 9.0 31 245-275 4-34 (237)
61 cd08881 RHO_alpha_C_NDO-like C 98.5 3.8E-07 8.3E-12 85.8 8.2 132 244-398 8-156 (206)
62 PF11723 Aromatic_hydrox: Homo 98.3 1.3E-06 2.9E-11 81.9 7.8 186 237-427 21-239 (240)
63 KOG1336 Monodehydroascorbate/f 94.7 0.017 3.6E-07 60.1 2.0 38 162-199 1-39 (478)
64 PRK14127 cell division protein 89.9 0.93 2E-05 38.3 5.9 43 5-50 26-68 (109)
65 PRK00888 ftsB cell division pr 75.9 8.1 0.00018 32.3 5.9 50 20-69 28-77 (105)
66 TIGR02449 conserved hypothetic 75.7 11 0.00024 28.7 6.0 58 3-60 5-62 (65)
67 PF04977 DivIC: Septum formati 70.8 12 0.00026 28.9 5.4 54 16-69 14-67 (80)
68 PRK14549 50S ribosomal protein 70.7 17 0.00037 28.0 6.1 46 19-64 12-62 (69)
69 PF13334 DUF4094: Domain of un 69.3 3.9 8.5E-05 33.7 2.4 32 9-40 63-94 (95)
70 PF05546 She9_MDM33: She9 / Md 66.8 16 0.00035 34.3 6.1 55 10-65 24-78 (207)
71 cd00427 Ribosomal_L29_HIP Ribo 66.4 19 0.00042 26.5 5.4 29 18-46 5-33 (57)
72 PRK14156 heat shock protein Gr 65.2 22 0.00049 32.6 6.7 50 5-55 21-70 (177)
73 TIGR02209 ftsL_broad cell divi 62.9 21 0.00046 28.1 5.5 50 19-69 24-73 (85)
74 PF07820 TraC: TraC-like prote 62.9 59 0.0013 26.6 7.9 33 18-50 1-33 (92)
75 PF10080 DUF2318: Predicted me 60.4 95 0.0021 25.9 9.0 78 128-221 2-92 (102)
76 PRK09039 hypothetical protein; 58.0 32 0.00069 35.0 7.1 30 21-50 139-168 (343)
77 PF06005 DUF904: Protein of un 57.7 42 0.00091 26.1 6.1 55 4-58 10-71 (72)
78 PF08606 Prp19: Prp19/Pso4-lik 57.3 26 0.00057 27.1 4.7 31 22-53 25-55 (70)
79 PF09740 DUF2043: Uncharacteri 52.9 8.5 0.00018 32.5 1.6 36 151-189 63-100 (110)
80 KOG0484 Transcription factor P 51.1 20 0.00043 29.9 3.4 30 26-55 27-67 (125)
81 PRK14161 heat shock protein Gr 51.0 49 0.0011 30.4 6.5 44 6-55 19-62 (178)
82 PRK00306 50S ribosomal protein 48.7 66 0.0014 24.4 5.8 27 18-44 8-34 (66)
83 PF05377 FlaC_arch: Flagella a 48.0 29 0.00064 25.5 3.6 47 7-64 2-48 (55)
84 PF06148 COG2: COG (conserved 46.8 44 0.00095 28.8 5.3 47 14-60 64-110 (133)
85 PF11572 DUF3234: Protein of u 46.7 5.6 0.00012 32.3 -0.4 52 113-168 3-54 (103)
86 PF08537 NBP1: Fungal Nap bind 46.4 55 0.0012 32.8 6.4 49 20-68 176-224 (323)
87 PF11559 ADIP: Afadin- and alp 46.2 87 0.0019 27.5 7.2 41 12-52 66-106 (151)
88 PF05278 PEARLI-4: Arabidopsis 45.5 53 0.0011 32.2 6.0 40 21-60 202-241 (269)
89 PRK06342 transcription elongat 44.5 45 0.00098 30.1 5.1 41 21-61 36-78 (160)
90 PRK00461 rpmC 50S ribosomal pr 43.4 88 0.0019 25.3 6.1 51 19-69 8-62 (87)
91 PF06698 DUF1192: Protein of u 43.1 64 0.0014 24.1 4.8 29 17-45 19-47 (59)
92 PF00831 Ribosomal_L29: Riboso 43.0 74 0.0016 23.5 5.2 28 19-46 7-34 (58)
93 PRK04654 sec-independent trans 40.0 70 0.0015 30.2 5.7 46 6-52 42-87 (214)
94 PF07439 DUF1515: Protein of u 39.7 1E+02 0.0022 26.0 5.9 29 22-50 4-32 (112)
95 PF08317 Spc7: Spc7 kinetochor 39.5 94 0.002 31.2 7.1 41 20-60 224-264 (325)
96 PF12958 DUF3847: Protein of u 39.2 39 0.00084 27.3 3.4 69 20-92 2-71 (86)
97 TIGR00012 L29 ribosomal protei 39.2 1.1E+02 0.0024 22.3 5.6 26 19-44 5-30 (55)
98 PRK10884 SH3 domain-containing 38.2 71 0.0015 30.1 5.5 52 23-74 129-181 (206)
99 PRK10884 SH3 domain-containing 37.9 70 0.0015 30.2 5.4 31 21-51 95-125 (206)
100 PRK11637 AmiB activator; Provi 37.8 99 0.0021 32.3 7.2 7 264-270 371-377 (428)
101 COG5570 Uncharacterized small 36.2 49 0.0011 24.1 3.1 41 3-43 17-57 (57)
102 PF12761 End3: Actin cytoskele 35.3 37 0.0008 31.7 3.1 22 23-44 100-121 (195)
103 PRK14154 heat shock protein Gr 35.3 1.2E+02 0.0027 28.6 6.6 33 17-49 50-82 (208)
104 PRK14147 heat shock protein Gr 35.2 1.1E+02 0.0024 27.9 6.2 38 21-58 27-64 (172)
105 COG1842 PspA Phage shock prote 35.0 1.7E+02 0.0037 28.0 7.6 67 3-69 15-81 (225)
106 PF15155 MRFAP1: MORF4 family- 34.5 92 0.002 26.1 4.9 35 7-41 14-52 (127)
107 TIGR00219 mreC rod shape-deter 33.9 1E+02 0.0023 30.4 6.2 40 6-45 53-92 (283)
108 KOG2270 Serine/threonine prote 33.6 1.4E+02 0.0029 31.4 7.0 39 130-168 167-209 (520)
109 PF07889 DUF1664: Protein of u 33.6 1.1E+02 0.0024 26.6 5.5 36 24-59 87-122 (126)
110 PF13118 DUF3972: Protein of u 33.3 95 0.0021 26.9 5.0 44 2-45 74-118 (126)
111 PF04698 Rab_eff_C: Rab effect 33.1 62 0.0013 35.9 4.8 49 11-60 573-621 (714)
112 TIGR02894 DNA_bind_RsfA transc 32.9 1.8E+02 0.0038 26.4 6.8 54 6-59 84-137 (161)
113 PF13863 DUF4200: Domain of un 32.8 1.7E+02 0.0037 24.6 6.7 60 4-63 59-118 (126)
114 PRK14139 heat shock protein Gr 32.5 1.3E+02 0.0028 27.9 6.2 36 21-56 41-76 (185)
115 PF11083 Streptin-Immun: Lanti 32.5 1.7E+02 0.0037 24.2 6.1 40 17-56 50-89 (99)
116 PF11464 Rbsn: Rabenosyn Rab b 32.1 46 0.001 23.1 2.3 23 15-37 18-40 (42)
117 PF11471 Sugarporin_N: Maltopo 31.6 95 0.0021 23.3 4.2 31 21-51 27-57 (60)
118 PRK14164 heat shock protein Gr 31.6 1.3E+02 0.0028 28.6 6.2 37 19-55 77-113 (218)
119 PF01166 TSC22: TSC-22/dip/bun 31.4 64 0.0014 24.0 3.1 23 21-43 16-38 (59)
120 TIGR02497 yscI_hrpB_dom type I 30.5 1.4E+02 0.003 20.5 4.4 34 26-59 2-38 (39)
121 PF04728 LPP: Lipoprotein leuc 29.5 83 0.0018 23.3 3.5 24 21-44 12-35 (56)
122 PF09486 HrpB7: Bacterial type 29.5 1.3E+02 0.0028 27.2 5.4 43 19-61 22-64 (158)
123 PF05265 DUF723: Protein of un 29.4 29 0.00063 26.0 1.1 17 173-189 29-45 (60)
124 PF12718 Tropomyosin_1: Tropom 29.4 1.7E+02 0.0036 25.8 6.2 29 21-49 44-72 (143)
125 PRK14151 heat shock protein Gr 29.3 1.6E+02 0.0034 27.1 6.2 32 21-52 29-60 (176)
126 PRK14163 heat shock protein Gr 29.2 1.5E+02 0.0032 28.2 6.1 33 21-53 49-81 (214)
127 PRK14162 heat shock protein Gr 28.8 1.4E+02 0.0031 27.9 5.8 35 21-55 48-82 (194)
128 PF03195 DUF260: Protein of un 28.7 44 0.00096 27.8 2.2 30 13-42 72-101 (101)
129 PF10458 Val_tRNA-synt_C: Valy 28.6 81 0.0018 23.8 3.5 27 24-50 2-28 (66)
130 COG3879 Uncharacterized protei 28.5 1.2E+02 0.0027 29.3 5.5 28 23-50 54-81 (247)
131 PF12777 MT: Microtubule-bindi 28.1 1.4E+02 0.003 30.3 6.2 39 18-56 241-279 (344)
132 PF15186 TEX13: Testis-express 28.1 2.2E+02 0.0047 25.4 6.4 62 4-69 83-149 (152)
133 PF08182 Pedibin: Pedibin/Hym- 27.7 79 0.0017 20.9 2.7 23 24-46 2-24 (35)
134 PF09006 Surfac_D-trimer: Lung 27.2 1E+02 0.0023 21.8 3.5 16 21-36 1-16 (46)
135 smart00352 POU Found in Pit-Oc 27.1 1.2E+02 0.0026 23.9 4.2 30 26-55 7-36 (75)
136 PF13600 DUF4140: N-terminal d 26.8 1.1E+02 0.0025 24.9 4.4 29 21-49 72-100 (104)
137 PRK00294 hscB co-chaperone Hsc 26.4 1.9E+02 0.0042 26.4 6.2 62 1-64 98-162 (173)
138 COG1422 Predicted membrane pro 26.3 97 0.0021 29.0 4.2 44 11-60 64-107 (201)
139 COG1645 Uncharacterized Zn-fin 26.2 51 0.0011 28.7 2.2 29 156-187 27-55 (131)
140 PF00631 G-gamma: GGL domain; 26.1 48 0.001 25.2 1.9 45 20-71 3-47 (68)
141 PRK14155 heat shock protein Gr 26.0 1.9E+02 0.004 27.4 6.2 36 21-56 22-57 (208)
142 PF04380 BMFP: Membrane fusoge 26.0 1.2E+02 0.0026 23.9 4.2 27 25-51 49-75 (79)
143 COG0497 RecN ATPase involved i 26.0 1.5E+02 0.0033 32.2 6.1 53 4-56 327-379 (557)
144 PRK14149 heat shock protein Gr 25.9 2E+02 0.0042 26.9 6.2 36 21-56 45-80 (191)
145 CHL00154 rpl29 ribosomal prote 25.3 2.9E+02 0.0064 21.1 6.0 26 16-42 10-35 (67)
146 PRK14127 cell division protein 25.3 91 0.002 26.3 3.5 55 6-63 34-101 (109)
147 PRK14157 heat shock protein Gr 25.3 2E+02 0.0042 27.6 6.2 36 21-56 86-121 (227)
148 PRK14140 heat shock protein Gr 25.1 2.1E+02 0.0045 26.7 6.2 32 21-52 46-77 (191)
149 PF12325 TMF_TATA_bd: TATA ele 24.2 3.4E+02 0.0074 23.3 6.9 18 22-39 33-50 (120)
150 KOG0289 mRNA splicing factor [ 24.2 5.9E+02 0.013 26.9 9.6 35 23-58 89-123 (506)
151 COG5415 Predicted integral mem 24.2 1.2E+02 0.0027 28.5 4.4 38 21-58 10-47 (251)
152 KOG2010 Double stranded RNA bi 24.1 1.8E+02 0.0039 29.3 5.7 39 21-59 149-204 (405)
153 PF14257 DUF4349: Domain of un 23.8 1.3E+02 0.0029 29.0 5.0 16 45-60 174-189 (262)
154 COG3027 zapA Cell division pro 23.8 1.6E+02 0.0034 24.7 4.7 34 26-59 61-98 (105)
155 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.7 3.5E+02 0.0076 23.2 7.1 31 19-49 59-89 (132)
156 PRK14148 heat shock protein Gr 23.7 2.2E+02 0.0049 26.5 6.1 32 21-52 49-80 (195)
157 PF06120 Phage_HK97_TLTM: Tail 23.5 2E+02 0.0043 28.8 6.1 39 21-59 129-167 (301)
158 PF04420 CHD5: CHD5-like prote 23.1 1.3E+02 0.0027 27.1 4.3 15 21-35 42-56 (161)
159 PF13815 Dzip-like_N: Iguana/D 23.0 2.4E+02 0.0051 23.9 5.8 46 13-58 65-112 (118)
160 PF07989 Microtub_assoc: Micro 22.8 1.2E+02 0.0026 23.8 3.5 19 21-39 52-70 (75)
161 COG5509 Uncharacterized small 22.5 1.3E+02 0.0028 22.6 3.3 27 16-42 22-48 (65)
162 PF07889 DUF1664: Protein of u 22.3 3.1E+02 0.0067 23.8 6.3 48 20-67 44-91 (126)
163 TIGR02977 phageshock_pspA phag 22.2 3.9E+02 0.0085 25.1 7.7 59 3-62 15-74 (219)
164 PRK13848 conjugal transfer pro 22.1 1.9E+02 0.0042 23.6 4.6 32 19-50 3-34 (98)
165 PF12958 DUF3847: Protein of u 22.1 2.4E+02 0.0052 22.8 5.2 35 27-61 2-36 (86)
166 PF10186 Atg14: UV radiation r 21.9 3.1E+02 0.0067 26.4 7.3 40 19-58 56-95 (302)
167 PRK09039 hypothetical protein; 21.9 2.8E+02 0.0061 28.2 7.0 22 21-42 146-167 (343)
168 PF07282 OrfB_Zn_ribbon: Putat 21.9 74 0.0016 23.9 2.2 33 156-189 27-59 (69)
169 TIGR02559 HrpB7 type III secre 21.8 2.4E+02 0.0053 25.4 5.7 41 20-60 23-63 (158)
170 PF13094 CENP-Q: CENP-Q, a CEN 21.6 2.5E+02 0.0054 24.9 5.9 43 16-58 38-80 (160)
171 PF14446 Prok-RING_1: Prokaryo 21.5 46 0.001 24.4 0.9 25 173-197 18-47 (54)
172 PF15290 Syntaphilin: Golgi-lo 21.2 2.9E+02 0.0062 27.3 6.4 45 5-50 75-125 (305)
173 PF09486 HrpB7: Bacterial type 21.1 2.1E+02 0.0045 25.8 5.2 32 21-52 88-119 (158)
174 PF02996 Prefoldin: Prefoldin 20.8 2E+02 0.0044 23.8 4.9 31 21-51 86-116 (120)
175 KOG0980 Actin-binding protein 20.8 2.7E+02 0.0059 31.9 6.9 43 3-45 471-520 (980)
176 COG3074 Uncharacterized protei 20.7 2.5E+02 0.0055 21.7 4.7 44 4-47 10-53 (79)
177 PRK14143 heat shock protein Gr 20.5 2.7E+02 0.0058 26.9 6.2 32 21-52 76-107 (238)
178 PRK14159 heat shock protein Gr 20.4 2.8E+02 0.006 25.5 5.9 39 19-57 30-68 (176)
179 PF09304 Cortex-I_coil: Cortex 20.4 3.9E+02 0.0085 22.5 6.2 46 13-58 24-76 (107)
180 PF12709 Kinetocho_Slk19: Cent 20.3 4.7E+02 0.01 21.2 6.5 48 5-52 11-75 (87)
181 COG0255 RpmC Ribosomal protein 20.2 3.5E+02 0.0077 20.9 5.6 25 19-43 11-35 (69)
182 PF14920 MTBP_C: MDM2-binding 20.1 41 0.0009 32.2 0.5 16 175-190 15-30 (251)
183 PF11853 DUF3373: Protein of u 20.1 66 0.0014 34.3 2.0 27 21-47 33-59 (489)
No 1
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=3.6e-95 Score=747.17 Aligned_cols=433 Identities=78% Similarity=1.346 Sum_probs=375.0
Q ss_pred CchhhHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhhcccCCCCC-Ccc
Q 013818 1 MLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGT-DQT 79 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 79 (436)
|+||+||||||||||||+|||||||||||||||||+|||+|||+||||||++|+||++||+|+|+++|+|++.++. .|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (536)
T PLN02281 103 MILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPS 182 (536)
T ss_pred HHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhccCCCccccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998876555 666
Q ss_pred CCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecC
Q 013818 80 CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNT 159 (436)
Q Consensus 80 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~ 159 (436)
|+.++++ ...+...++..++++++++++.++..++++.||++|.++||++|+++.++++|++++|||+.+|+++|+.|+
T Consensus 183 ~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~~dG~v~A~~D~ 261 (536)
T PLN02281 183 SSTTASA-VELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNT 261 (536)
T ss_pred cCCcCcc-hhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEECCCCeEEEEeCc
Confidence 6666655 455667777788999999999999999999999999999999899999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccCCeEeCcCCCceeecCCCccccCCccccccccccCCeeeecCeEEEcCCCCCCCCCCCCCCCCCCc
Q 013818 160 CAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGF 239 (436)
Q Consensus 160 CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~pv~e~~G~I~v~~~~~~~~~~lp~~~~~~~~ 239 (436)
|||||++|+.|.++++.|+||||||+||.+|+|+.+|+.+....++++|||++++|+||||++++++.+.+|++..+.++
T Consensus 262 CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlVwV~lgd~~~aP~~p~ld~p~~~ 341 (536)
T PLN02281 262 CAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGF 341 (536)
T ss_pred CcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEEEEEeCCCCCCCCCccccCcccc
Confidence 99999999999999999999999999999999999998765567899999999999999999876554456665544466
Q ss_pred EEeEEEEEEeecCchhhhhccCCCCCCCCCCcccccCCCCCCceeeeecCCCCCCccccCCCccceecCCeeEEEEeeec
Q 013818 240 EIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGIS 319 (436)
Q Consensus 240 ~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~ 319 (436)
.......+++++||++++||++|+||++|+|.++++..+..+..++...+...+.++|...+..++|.+||++...+++.
T Consensus 342 ~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p~~v~~~~~~~~~~p~~~~~pv~~~f~aP~~v~l~i~~~ 421 (536)
T PLN02281 342 LIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGIS 421 (536)
T ss_pred eEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCCceeEEecccCCCCcccccCCceEEEECcEEEEEeeccc
Confidence 65555678999999999999999999999999999987666665555444444555665545568899999998888887
Q ss_pred CCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcchHHHHHHHHHHHHHhhHHHHHHHHHhhccCC
Q 013818 320 KPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNG 399 (436)
Q Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~ED~~ile~qq~~l~~g 399 (436)
.+|+..+......+.++..++.|||+++++||+||.+.+||..+.+..++...++..+...+|+||+.|+|+||+++..+
T Consensus 422 ~~G~~~~~~~~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~~~~~vF~ED~~iLEaQQ~~i~~~ 501 (536)
T PLN02281 422 KPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERMLNG 501 (536)
T ss_pred cCCccccccccccccceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHHHHHhhHhhHhHHHHHHHHHHHhhcc
Confidence 77765433333445567789999999999999999999999776444444445466778899999999999999999988
Q ss_pred CCCCCccccCCHHHHHHHHHHHHHHccCCCCCCCC
Q 013818 400 ANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMK 434 (436)
Q Consensus 400 ~~~~~l~~~aD~~~v~~Rrwl~~l~~g~~~~p~~~ 434 (436)
...+++++++|+++++||||++++.+|.+++||++
T Consensus 502 ~~~~~l~l~aD~~~v~~RRWl~~~~~~~~~~pf~~ 536 (536)
T PLN02281 502 ANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPFSG 536 (536)
T ss_pred cccccccchhhHHHHHHHHHHHHhhcccCCCCCCC
Confidence 78888999999999999999999999999999984
No 2
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=4.5e-50 Score=397.29 Aligned_cols=272 Identities=37% Similarity=0.762 Sum_probs=225.1
Q ss_pred ccccccCceEEeeeCCCC-CCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecC
Q 013818 111 YNTRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 189 (436)
Q Consensus 111 ~~~~~~~~W~~v~~~~~l-~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~ 189 (436)
......+.||+|+.++|| ++|++..++++|++++|||+.+|+++|+.|.|||||++|+.|.++++.|+||||||+||.+
T Consensus 65 ~~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~ 144 (394)
T PLN00095 65 ATADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETG 144 (394)
T ss_pred CCCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCC
Confidence 345568999999999999 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCccc--cccccccCCeeeecCeEEEcCCCCCCCC------------------CCCC-CCCCCCcEEeEEEEEE
Q 013818 190 GKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPTA------------------TIPC-LLPPSGFEIHAEIVME 248 (436)
Q Consensus 190 G~~~~~P~~~~--~~~~l~~~pv~e~~G~I~v~~~~~~~~~------------------~lp~-~~~~~~~~~~~~~~~~ 248 (436)
|+|+.+|+.+. .+.++++|||++++|+||||+++..+.. .+|. +.+..+|..+.+..++
T Consensus 145 G~C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~D 224 (394)
T PLN00095 145 GECAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIAD 224 (394)
T ss_pred CCEeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEe
Confidence 99999997532 3467899999999999999998644320 2333 3344688877777789
Q ss_pred eecCchhhhhccCCCCC-CCCCCcccccC----C---CCCCceeeeecCCCCCCccccCCCccceecCCeeEEEEeeecC
Q 013818 249 LPIEHGLLLDNLLDLAH-APFTHTSTFAK----G---WSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISK 320 (436)
Q Consensus 249 ~~~nwk~~~EN~~D~~H-~~~vH~~t~~~----~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ 320 (436)
+++.|.+++||++|++| .+|+|+.||.. . +..+.... .....++.+.|++++++|+|.+||++.+++++.+
T Consensus 225 lp~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~-~~~~~~l~g~~~~~p~~~~F~ppc~~~s~i~l~~ 303 (394)
T PLN00095 225 IKLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGT-KIIAKVLRGGRDAVPQSATFKPACVIASTIALED 303 (394)
T ss_pred ccccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhh-hhhhhhheeecccCCcceeEcCceeeeeeecccc
Confidence 99999999999999999 69999988851 1 11121111 1224467888999999999999999999999865
Q ss_pred -CCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchh---hccCcchHHHHHHHHHHHHHhhHHHHHH
Q 013818 321 -PGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS---VLKHVPFMQYLWRHFAEQVLNEDLRLVL 390 (436)
Q Consensus 321 -~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~v~~ED~~ile 390 (436)
||+.. .|..|++++|+|.|.++++||++++|++||.. +...+|. ..|..+..+|+.||++++.
T Consensus 304 ~~g~~~-----~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~--~~w~~~a~~vl~e~l~~v~ 370 (394)
T PLN00095 304 GPGGGD-----GTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAG--DVWANLAMMVLKEELEDVR 370 (394)
T ss_pred cCCCCc-----cccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchH--HHHHHHHHHHHHHHHHHHh
Confidence 65533 34568999999999999999999999999975 5555554 6888999999999999875
No 3
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=1.6e-49 Score=416.28 Aligned_cols=309 Identities=22% Similarity=0.428 Sum_probs=225.4
Q ss_pred cccccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEc-CCCcEEEEecCCCCCCCCCCCCccc-CCeEeCcCCCceee
Q 013818 110 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYS 187 (436)
Q Consensus 110 ~~~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~-~dG~~~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~ 187 (436)
.....+.+.||+||.++||++|++..++++|+++||||+ .+|+++||.|+|||||++|+.|.++ ++.|+||||||+||
T Consensus 82 ~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd 161 (539)
T PLN02518 82 DSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFD 161 (539)
T ss_pred chhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEc
Confidence 334678999999999999988999999999999999998 8999999999999999999999985 67999999999999
Q ss_pred cCCCccccCCccc----------cccccccCCeeeecCeEEEcCCCCC----CCCCCCCC---CCCCCcEEeEEEEEEee
Q 013818 188 TDGKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCL---LPPSGFEIHAEIVMELP 250 (436)
Q Consensus 188 ~~G~~~~~P~~~~----------~~~~l~~~pv~e~~G~I~v~~~~~~----~~~~lp~~---~~~~~~~~~~~~~~~~~ 250 (436)
.+|+|+.+|+... ...++++|||++++|+||||++++. +...+|.+ .++.+|... ....+++
T Consensus 162 ~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~ 240 (539)
T PLN02518 162 GCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLF 240 (539)
T ss_pred CCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEe
Confidence 9999999997421 2357999999999999999998642 11234433 233455432 3356889
Q ss_pred cCchhhhhccCCCCCCCCCCcccccCCCC-CCceeeeec-CCCCCCccc-cCCCccceecCCeeEEEEeeecCCCCcCCC
Q 013818 251 IEHGLLLDNLLDLAHAPFTHTSTFAKGWS-VPSLVKFLT-PASGLQGYW-DPYPIDMEFRPPCMVLSTIGISKPGKLEGQ 327 (436)
Q Consensus 251 ~nwk~~~EN~~D~~H~~~vH~~t~~~~~~-~p~~~~~~~-~~~~~~~~~-~~~~~~~~f~~P~~~~~~~~~~~~g~~~~~ 327 (436)
++|++++||++|++|++|+|++++|.... .+...+... ...++.+.+ ........|.+||++...+++. .+ .+..
T Consensus 241 ~~~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~-~~-~~~~ 318 (539)
T PLN02518 241 YGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEID-TK-LPIV 318 (539)
T ss_pred cCchhHHHhCCccchhceeccccccCccccccccceEEEcCCCcccccccCCCceEEEEECCeEEEEeeeee-cc-ccCC
Confidence 99999999999999999999999987431 121112111 112232222 1222357899999876655543 11 0000
Q ss_pred CcccccceeEEEEEeecCCCCceeeeeeeeccchhh-------ccCcchHHHHHH-HHHHHHHhhHHHHHHHHHhhccCC
Q 013818 328 NTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-------LKHVPFMQYLWR-HFAEQVLNEDLRLVLGQQERMNNG 399 (436)
Q Consensus 328 ~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~-------~~~~p~~~~~~~-~~~~~v~~ED~~ile~qq~~l~~g 399 (436)
......+..+++++|+++++||++|.+.+||... .+.+| .++. .-..+|++||+.++++|++.+...
T Consensus 319 --~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~P---rW~~h~~~n~Vl~~D~~~lh~Qe~~~~~~ 393 (539)
T PLN02518 319 --GDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVP---RWYEHWTSNKVYDGDMIVLQGQEKIFLSK 393 (539)
T ss_pred --CCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCc---hHHHHhhhccchHhHHHHHHHHHHHHhhc
Confidence 0011234556788999999999999999887322 12233 2222 225789999999999998876431
Q ss_pred -C-----------CCCCccccCCHHHHHHHHHHHHHHcc
Q 013818 400 -A-----------NVWNLPVGYDKLGVRYRLWRDALEKG 426 (436)
Q Consensus 400 -~-----------~~~~l~~~aD~~~v~~Rrwl~~l~~g 426 (436)
. ..+++|+++|+.+++||||+++++.|
T Consensus 394 ~~e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g 432 (539)
T PLN02518 394 SGEGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNS 432 (539)
T ss_pred cccccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcC
Confidence 1 12368999999999999999998654
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=6.7e-41 Score=341.03 Aligned_cols=325 Identities=23% Similarity=0.354 Sum_probs=219.0
Q ss_pred ccCCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEe
Q 013818 78 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQ 157 (436)
Q Consensus 78 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~ 157 (436)
..+...++|+++|+.+...+|. +.||+||+++||+++++++++++|+++||+|+.||+++||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~ 66 (367)
T COG4638 4 RLPPPFYTDPELFQLELERIFY-----------------KHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALA 66 (367)
T ss_pred cCCCccccCHHHHHHHHHHhhh-----------------hCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEe
Confidence 4566788999999999999875 47999999999998899999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccC-CeEeCcCCCceeecCCCccccCC--cc----ccccccccCCeeeecCeEEEcCCCCCCC---
Q 013818 158 NTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPS--TQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPT--- 227 (436)
Q Consensus 158 n~CpHrg~~L~~g~~~~-~~l~CpyHgw~f~~~G~~~~~P~--~~----~~~~~l~~~pv~e~~G~I~v~~~~~~~~--- 227 (436)
|+|||||++|+.|.+.+ +.|+||||||+||.+|+|+.+|. .. ....++++||+++++|+||||+++++++
T Consensus 67 d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~ 146 (367)
T COG4638 67 DVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEA 146 (367)
T ss_pred ccCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhH
Confidence 99999999999999988 89999999999999999999994 22 1236899999999999999999987633
Q ss_pred CCCCCCC-CCCCcEEe-EEEEEEeecCchhhhhccCC-CCCCCCCCcccccCCCCCC---ceeee--------ecCCCCC
Q 013818 228 ATIPCLL-PPSGFEIH-AEIVMELPIEHGLLLDNLLD-LAHAPFTHTSTFAKGWSVP---SLVKF--------LTPASGL 293 (436)
Q Consensus 228 ~~lp~~~-~~~~~~~~-~~~~~~~~~nwk~~~EN~~D-~~H~~~vH~~t~~~~~~~p---~~~~~--------~~~~~~~ 293 (436)
...|... ...++... .......++|||+++||++| +||++++|+++.+...... ..+.. .......
T Consensus 147 ~~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 226 (367)
T COG4638 147 FLPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFF 226 (367)
T ss_pred hcccccccccccccccCceEEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCcc
Confidence 1122222 22233323 45567889999999998887 9999999998776432110 00000 0000000
Q ss_pred Cc-cccC----CCccceecCCeeEEEEeeecCCCC-cCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCc
Q 013818 294 QG-YWDP----YPIDMEFRPPCMVLSTIGISKPGK-LEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV 367 (436)
Q Consensus 294 ~~-~~~~----~~~~~~f~~P~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~ 367 (436)
.. .+.. +........+.... -+..|.. .. ..............|+++++|.+......... .....
T Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~ 298 (367)
T COG4638 227 QPLGSEASSYGFDGNYEVHVPGAYL---LFLYPNSTVW----NHVTVDDVIVFFVQPIDEDETMVTLVWLVLPD-LVEGV 298 (367)
T ss_pred CCcchhhhccccccccccccCceeE---EEEcCCchhe----eeecccceeEEEEEecCCceeEEEeeeeeccc-hhhHH
Confidence 00 0000 00000000111100 0111110 00 00011123455679999999988765332111 11222
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHhhccCCCC-CCCccccCCHHHHHHHHHHHHHHccC
Q 013818 368 PFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGA 427 (436)
Q Consensus 368 p~~~~~~~~~~~~v~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rrwl~~l~~g~ 427 (436)
..+...+..+...+++||..|+|.||+++.+... ....+...|...+++++|+.+.....
T Consensus 299 ~~~~~~~~~~~~~~~~qD~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (367)
T COG4638 299 DYFDKLIRRFRQEILDQDREILENQQPGRLSPALERGPYPIREDAGSVQFRRWLAERLVLY 359 (367)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhcccccccccCCCccccccchhhHHHHHHHHHHhhh
Confidence 3334555667788999999999999997665444 33467788999999999987554333
No 5
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=3.6e-38 Score=324.22 Aligned_cols=179 Identities=20% Similarity=0.263 Sum_probs=151.2
Q ss_pred ccCCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEE
Q 013818 78 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 156 (436)
Q Consensus 78 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a~ 156 (436)
.++...++|+++|+.|+++||. +.|++||+.++|+ +|+++++.++|++|+|+|+.||+++||
T Consensus 15 ~~~~~~Ytd~~~f~~E~~~IF~-----------------~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af 77 (433)
T TIGR03229 15 RCKREMFTDPELFDLEMKHIFE-----------------GNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAF 77 (433)
T ss_pred cCChhhcCCHHHHHHHHHHHhh-----------------hCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEE
Confidence 4778899999999999999986 4599999999998 589999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCc-ccCCeEeCcCCCceeecCCCccccCCccc----------cccccccCC-eeeecCeEEEcCCCC
Q 013818 157 QNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSLP-CFEQEGMIWIWPGDE 224 (436)
Q Consensus 157 ~n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~~----------~~~~l~~~p-v~e~~G~I~v~~~~~ 224 (436)
.|+|||||++|+.|. ++.+.|+||||||+||.||+|+++|.... ...+|..++ ++.+.|+|||+++++
T Consensus 78 ~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~ 157 (433)
T TIGR03229 78 INACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPD 157 (433)
T ss_pred eCcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCC
Confidence 999999999999864 56679999999999999999999997321 146799997 556789999999876
Q ss_pred CCCCCCCCCCCC-------------CCcEEe-EEEEEEeecCchhhhhccCCCCCCCCCCccccc
Q 013818 225 PPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 275 (436)
Q Consensus 225 ~~~~~lp~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~ 275 (436)
++ +|++++++ .++... +...++++||||+++||++|+||++++|..++.
T Consensus 158 ~~--~l~e~Lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 220 (433)
T TIGR03229 158 VL--PLEEHLGETAKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA 220 (433)
T ss_pred CC--CHHHHhhhHHHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence 54 46665542 233333 345788999999999999999999999987654
No 6
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=7.2e-38 Score=321.82 Aligned_cols=180 Identities=19% Similarity=0.311 Sum_probs=154.4
Q ss_pred ccCCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEE
Q 013818 78 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 156 (436)
Q Consensus 78 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a~ 156 (436)
.++...++|+++|+.|+++||. +.|++||++++|+ +|+++++.+++++|+|+|+.||+++||
T Consensus 15 ~v~~~~ytd~~if~~E~~~IF~-----------------~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~ 77 (438)
T TIGR03228 15 RIARDMFTEPELFDLEMELIFE-----------------KNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHAL 77 (438)
T ss_pred ecChheECCHHHHHHHHHHHHh-----------------hCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEE
Confidence 4778899999999999999985 5699999999998 599999999999999999999999999
Q ss_pred ecCCCCCCCCCCC-CcccCCeEeCcCCCceeecCCCccccCCcc-------ccccccccCCeeeecCeEEEcCCCCCCCC
Q 013818 157 QNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTA 228 (436)
Q Consensus 157 ~n~CpHrg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~-------~~~~~l~~~pv~e~~G~I~v~~~~~~~~~ 228 (436)
.|+|||||++|+. +.++.+.|+||||||+|+.||+|+++|... ....+|+.++|.+++|+||++++++++ .
T Consensus 78 ~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~-~ 156 (438)
T TIGR03228 78 VNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT-D 156 (438)
T ss_pred cccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC-C
Confidence 9999999999997 788888999999999999999999998642 135678889999999999999987642 2
Q ss_pred CCCCCCCC--------------CCcEEe-EEEEEEeecCchhhhhccCCCCCCCCCCccccc
Q 013818 229 TIPCLLPP--------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 275 (436)
Q Consensus 229 ~lp~~~~~--------------~~~~~~-~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~ 275 (436)
++++++++ .++.+. +...+.++||||+.+||++|+||++++|..+++
T Consensus 157 ~l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 157 SLEDFLGDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred CHHHHhhhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 46665532 124433 345688999999999999999999999988754
No 7
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.97 E-value=4.4e-31 Score=230.11 Aligned_cols=123 Identities=65% Similarity=1.381 Sum_probs=113.5
Q ss_pred ccCCCCcccccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCC
Q 013818 104 VSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHG 183 (436)
Q Consensus 104 ~~~~~~~~~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHg 183 (436)
+.++..++...+++.|++|+.+++|++|+++.++++|++++|+|+.+|+++|++|+|||+|++|+.|.++++.|+|||||
T Consensus 3 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hg 82 (129)
T cd04337 3 VLGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHG 82 (129)
T ss_pred ccccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCC
Confidence 34566788899999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred ceeecCCCccccCCccccccccccCCeeeecCeEEEcCCCCCC
Q 013818 184 WEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 184 w~f~~~G~~~~~P~~~~~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
|+||.+|+|+.+|..+....++++||+++++|+||||+++++|
T Consensus 83 w~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p 125 (129)
T cd04337 83 WEYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP 125 (129)
T ss_pred CEECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence 9999999999999765445689999999999999999987654
No 8
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.97 E-value=1.8e-30 Score=223.90 Aligned_cols=109 Identities=33% Similarity=0.739 Sum_probs=99.9
Q ss_pred CceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCCccccC
Q 013818 117 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 196 (436)
Q Consensus 117 ~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P 196 (436)
..||+++.+++|+ ++++.+++.|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP 80 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP 80 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence 4799999999996 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc---------cccccccCCeeeecCeEEEcCCCCCC
Q 013818 197 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 197 ~~~~---------~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
+... ...++++|||+|++|+||||++++.|
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~ 119 (123)
T cd03537 81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119 (123)
T ss_pred CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence 7431 23689999999999999999987655
No 9
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.97 E-value=2e-30 Score=230.29 Aligned_cols=132 Identities=33% Similarity=0.714 Sum_probs=117.4
Q ss_pred ccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCc
Q 013818 102 LNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP 180 (436)
Q Consensus 102 ~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~Cp 180 (436)
++.+++..++...+.+.|++|+.+++|+ +|+++.+.+.|.+++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP 84 (144)
T cd03479 5 LTRVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCC 84 (144)
T ss_pred eeecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEcc
Confidence 3456888899999999999999999999 699999999999999999999999999999999999999999888999999
Q ss_pred CCCceeecCCCccccCCccc-----cccccccCCeeeecCeEEEcCCCCCCCCCCCCC
Q 013818 181 YHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 233 (436)
Q Consensus 181 yHgw~f~~~G~~~~~P~~~~-----~~~~l~~~pv~e~~G~I~v~~~~~~~~~~lp~~ 233 (436)
||||+||.+|+|+.+|+... ...+|++|+|++++|+|||++++..+++++|++
T Consensus 85 ~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~ 142 (144)
T cd03479 85 YHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY 142 (144)
T ss_pred CCCcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence 99999999999999997542 245799999999999999999864443445554
No 10
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.97 E-value=3.4e-30 Score=230.04 Aligned_cols=132 Identities=21% Similarity=0.361 Sum_probs=117.0
Q ss_pred cCCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEEe
Q 013818 79 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 157 (436)
Q Consensus 79 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a~~ 157 (436)
+++..++|+++|+.|++++|+ .+.|++|+++++|+ +|+++++.++|.+|+|+|+.+|+++|+.
T Consensus 2 ~~~~~y~d~~~~~~E~~~if~----------------~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~ 65 (150)
T cd03545 2 VPYKVFTDRAYFDREQERIFR----------------GKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWV 65 (150)
T ss_pred CChhhccCHHHHHHHHHhhhC----------------CCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEc
Confidence 467789999999999999985 25699999999998 5999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCc-ccCCeEeCcCCCceeecCCCccccCCcc-------------ccccccccCCeeeecCeEEEcCCC
Q 013818 158 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------------LRNVKIKSLPCFEQEGMIWIWPGD 223 (436)
Q Consensus 158 n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~-------------~~~~~l~~~pv~e~~G~I~v~~~~ 223 (436)
|+|||||++|+.|. ++++.|+||||||+||.+|+|+.+|..+ ....+|++|+|.+++|+|||++++
T Consensus 66 n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~ 145 (150)
T cd03545 66 NRCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSD 145 (150)
T ss_pred ccCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCC
Confidence 99999999999874 4568999999999999999999999742 124689999999999999999987
Q ss_pred CCC
Q 013818 224 EPP 226 (436)
Q Consensus 224 ~~~ 226 (436)
+++
T Consensus 146 ~~~ 148 (150)
T cd03545 146 EVE 148 (150)
T ss_pred CCC
Confidence 644
No 11
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.96 E-value=6.4e-30 Score=224.26 Aligned_cols=115 Identities=30% Similarity=0.839 Sum_probs=104.8
Q ss_pred cccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCC
Q 013818 112 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 191 (436)
Q Consensus 112 ~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~ 191 (436)
...|++.|++|+.++||++|....++++|++|+|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||.+|+
T Consensus 11 ~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~ 90 (134)
T cd04338 11 EYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGK 90 (134)
T ss_pred ccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCC
Confidence 45678999999999999988889999999999999999999999999999999999999999899999999999999999
Q ss_pred ccccCCccc-----cccccccCCeeeecCeEEEcCCCCCC
Q 013818 192 CEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 192 ~~~~P~~~~-----~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
|+.+|.... ...+|++|||++++|+|||++++.++
T Consensus 91 ~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~ 130 (134)
T cd04338 91 CVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATP 130 (134)
T ss_pred EEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCC
Confidence 999997531 24669999999999999999987654
No 12
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.96 E-value=4.7e-29 Score=213.22 Aligned_cols=109 Identities=25% Similarity=0.638 Sum_probs=101.2
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCCccccCC
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 197 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~ 197 (436)
+|++|+.++||++|+++.+++.|++++|+|+.+|+++|++|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|.
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc--cccccccCCeeeecCeEEEcCCCCCC
Q 013818 198 TQL--RNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 198 ~~~--~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
.+. ...++++|||++++|+|||+++++..
T Consensus 81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~ 111 (115)
T cd03531 81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN 111 (115)
T ss_pred ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence 542 24678999999999999999987653
No 13
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.95 E-value=1.8e-28 Score=209.93 Aligned_cols=110 Identities=35% Similarity=0.819 Sum_probs=101.8
Q ss_pred ccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCCccc
Q 013818 115 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 194 (436)
Q Consensus 115 ~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~ 194 (436)
+++.|++++.++||+ |++..+.+.|.+++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~ 80 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH 80 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence 568899999999998 8899999999999999999999999999999999999999998899999999999999999999
Q ss_pred cCCcc--ccccccccCCeeeecCeEEEcCCCCC
Q 013818 195 MPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEP 225 (436)
Q Consensus 195 ~P~~~--~~~~~l~~~pv~e~~G~I~v~~~~~~ 225 (436)
+|... ....+|++|||++++|+|||++++++
T Consensus 81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 113 (116)
T cd03532 81 MPGQERVPAKACVRSYPVVERDALIWIWMGDAA 113 (116)
T ss_pred CCCCCCCCCccccccCCEEEECCEEEEEcCCcc
Confidence 99864 23568999999999999999998653
No 14
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.95 E-value=1.3e-28 Score=217.02 Aligned_cols=113 Identities=30% Similarity=0.797 Sum_probs=102.0
Q ss_pred cccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcC-CCcEEEEecCCCCCCCCCCCCccc-CCeEeCcCCCceeecCCC
Q 013818 114 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK 191 (436)
Q Consensus 114 ~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~-dG~~~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~G~ 191 (436)
.+++.|++|+.++||++|+++.+++.|++|+|+|+. +|+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~ 92 (138)
T cd03480 13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS 92 (138)
T ss_pred CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence 457889999999999999999999999999999986 999999999999999999999875 469999999999999999
Q ss_pred ccccCCccc-------cccccccCCeeeecCeEEEcCCCCCC
Q 013818 192 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 192 ~~~~P~~~~-------~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
|+.+|.... ...+|++|||++++|+|||++++.++
T Consensus 93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~ 134 (138)
T cd03480 93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN 134 (138)
T ss_pred EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence 999997531 23679999999999999999987544
No 15
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.95 E-value=4.2e-28 Score=207.83 Aligned_cols=108 Identities=25% Similarity=0.410 Sum_probs=99.9
Q ss_pred ceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCCccccC
Q 013818 118 FWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 196 (436)
Q Consensus 118 ~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P 196 (436)
+|+.|+++++|+ +|+++++++.|.+++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 499999999998 5889999999999999999999999999999999999999999889999999999999999999999
Q ss_pred Cccc------cccccccCCeeeecCeEEEcCCCCC
Q 013818 197 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 225 (436)
Q Consensus 197 ~~~~------~~~~l~~~pv~e~~G~I~v~~~~~~ 225 (436)
.... ...+|.+++|.+++|||||+++++.
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~~ 115 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRSL 115 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCCc
Confidence 8642 3588999999999999999997643
No 16
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.95 E-value=6.1e-28 Score=214.66 Aligned_cols=127 Identities=20% Similarity=0.371 Sum_probs=111.6
Q ss_pred CCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEEecCCC
Q 013818 83 PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCA 161 (436)
Q Consensus 83 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~Cp 161 (436)
.++|+++|+.|++++|. +.|++|++.++|+ +|+++++.+.|++|+|+|+.+|+++|+.|+||
T Consensus 4 ~y~~~~~~~~e~~~i~~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~Cp 66 (146)
T cd03538 4 VYTDPEIFALEMERLFG-----------------NAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCP 66 (146)
T ss_pred eEcCHHHHHHHHHHHhh-----------------cCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCc
Confidence 57899999999999875 5699999999998 69999999999999999999999999999999
Q ss_pred CCCCCCCCC-ccc-CCeEeCcCCCceeecCCCccccCCccc----------cccccccC-CeeeecCeEEEcCCCCCC
Q 013818 162 HRACPLHLG-SVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 162 Hrg~~L~~g-~~~-~~~l~CpyHgw~f~~~G~~~~~P~~~~----------~~~~l~~~-pv~e~~G~I~v~~~~~~~ 226 (436)
|||++|+.+ .+. ++.|+||||||+||.||+|+.+|..+. ...+|..+ .|++++|+|||++++++|
T Consensus 67 Hrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 67 HKGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred CCCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 999999754 343 568999999999999999999997541 24689999 688999999999987643
No 17
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.95 E-value=8.4e-28 Score=209.40 Aligned_cols=108 Identities=22% Similarity=0.416 Sum_probs=97.2
Q ss_pred eEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcc-cCCeEeCcCCCceeecCCCccccC
Q 013818 119 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 196 (436)
Q Consensus 119 W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P 196 (436)
|++||+++||+ +|++.++.+++.+|+|+|+.||+++||.|+|||||++|+.|.. +++.|+||||||+||.+|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 99999999998 5999999999999999999999999999999999999998764 456899999999999999999999
Q ss_pred Ccc-----------------ccccccccCCeeeecCeEEEcCCCCCC
Q 013818 197 STQ-----------------LRNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 197 ~~~-----------------~~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
..+ ....+|++++|++++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 742 124679999999999999999987654
No 18
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.95 E-value=2e-27 Score=209.02 Aligned_cols=111 Identities=32% Similarity=0.644 Sum_probs=99.0
Q ss_pred cccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCc--ccCCeEeCcCCCceeec-CC
Q 013818 114 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG 190 (436)
Q Consensus 114 ~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~-~G 190 (436)
.+++.|++|+.+++|++|+++.+++.|++++|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||. +|
T Consensus 10 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG 88 (136)
T cd03548 10 GFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDG 88 (136)
T ss_pred CcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCc
Confidence 5788999999999999999999999999999999 69999999999999999999885 45789999999999996 89
Q ss_pred CccccCCccc----cccccccCCeeeecCeEEEcCCCCC
Q 013818 191 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP 225 (436)
Q Consensus 191 ~~~~~P~~~~----~~~~l~~~pv~e~~G~I~v~~~~~~ 225 (436)
+|+.+|..+. ...+|++|||++++|+|||++++..
T Consensus 89 ~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~~ 127 (136)
T cd03548 89 KLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDGD 127 (136)
T ss_pred cEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCcc
Confidence 9998775432 1457999999999999999997643
No 19
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.94 E-value=2.5e-27 Score=206.13 Aligned_cols=113 Identities=23% Similarity=0.409 Sum_probs=99.6
Q ss_pred cccCceEEeeeCCCCCC-CCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcc-cCCeEeCcCCCceeecCCC
Q 013818 114 RLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGK 191 (436)
Q Consensus 114 ~~~~~W~~v~~~~~l~~-g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~ 191 (436)
.+.+.|+.|++++||++ |++..+.++|.+|+|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.||+
T Consensus 4 i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G~ 83 (128)
T cd03472 4 VFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAGN 83 (128)
T ss_pred hhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCcC
Confidence 46788999999999985 777888899999999999999999999999999999999864 4468999999999999999
Q ss_pred ccccCCccc--------cccccccCCeeeecCeEEEcCCCCCC
Q 013818 192 CEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 192 ~~~~P~~~~--------~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
|+++|..+. ...+|+.++|.+++|+|||++++++|
T Consensus 84 ~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 84 LVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred EEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 999998532 13568999999999999999987654
No 20
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.94 E-value=4.6e-27 Score=201.44 Aligned_cols=107 Identities=33% Similarity=0.669 Sum_probs=99.3
Q ss_pred eEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcc-cCCeEeCcCCCceeecCCCccccC
Q 013818 119 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 196 (436)
Q Consensus 119 W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P 196 (436)
|++||.+++|+ +|+.+.+.+.|.+++|+|+.+|+++|+.|+|||+|++|+.|.+ +++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 8999999999999999999899999999999999999999988 789999999999999999999999
Q ss_pred Cccc------cccccccCCeeeecCeEEEcCCCCC
Q 013818 197 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 225 (436)
Q Consensus 197 ~~~~------~~~~l~~~pv~e~~G~I~v~~~~~~ 225 (436)
+... ...+|++|||++++|+|||+++++.
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~ 115 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDA 115 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCC
Confidence 8642 2467999999999999999998754
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.93 E-value=2.4e-26 Score=198.79 Aligned_cols=110 Identities=21% Similarity=0.505 Sum_probs=96.2
Q ss_pred CceEEeeeCCCCCC-CCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccC-CeEeCcCCCceeecCCCccc
Q 013818 117 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK 194 (436)
Q Consensus 117 ~~W~~v~~~~~l~~-g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~-~~l~CpyHgw~f~~~G~~~~ 194 (436)
+.|+.+++++||++ |++..+.+.|.+++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.||+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 36999999999986 78888889999999999999999999999999999999987654 68999999999999999999
Q ss_pred cCCccc--------cccccccCCee-eecCeEEEcCCCCCC
Q 013818 195 MPSTQL--------RNVKIKSLPCF-EQEGMIWIWPGDEPP 226 (436)
Q Consensus 195 ~P~~~~--------~~~~l~~~pv~-e~~G~I~v~~~~~~~ 226 (436)
+|..+. ...+|+++++. +++|+|||+++++++
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~ 121 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP 121 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence 997442 24679999865 589999999987543
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.93 E-value=3.3e-26 Score=197.95 Aligned_cols=108 Identities=19% Similarity=0.358 Sum_probs=96.0
Q ss_pred eEEeeeCCCCCC-CCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCccc-CCeEeCcCCCceeecCCCccccC
Q 013818 119 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMP 196 (436)
Q Consensus 119 W~~v~~~~~l~~-g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~G~~~~~P 196 (436)
|+.+|+++||++ |++..+.+.|.+++|+|+.+|+++|+.|+|||||++|+.|... ...|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 899999999986 8888889999999999998999999999999999999987654 35799999999999999999999
Q ss_pred Cccc---------cccccccCCeeeecCeEEEcCCCCCC
Q 013818 197 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 197 ~~~~---------~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
..+. ...+|++|+|++++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 119 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGP 119 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence 7531 23679999999999999999987643
No 23
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.92 E-value=3.6e-25 Score=191.19 Aligned_cols=108 Identities=24% Similarity=0.468 Sum_probs=93.9
Q ss_pred eEEeeeCCCCCC-CCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcc-cCCeEeCcCCCceeecCCCccccC
Q 013818 119 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 196 (436)
Q Consensus 119 W~~v~~~~~l~~-g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P 196 (436)
|+.||+.+||++ |++..+.+.|.+++|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 899999999985 888999999999999999999999999999999999998754 456999999999999999999999
Q ss_pred Cccc----------cccccccCC-eeeecCeEEEcCCCCCC
Q 013818 197 STQL----------RNVKIKSLP-CFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 197 ~~~~----------~~~~l~~~p-v~e~~G~I~v~~~~~~~ 226 (436)
.... ...+|..++ ++.++|||||++++++|
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~ 121 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA 121 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence 6321 135788886 55678999999987654
No 24
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.92 E-value=5.4e-25 Score=182.47 Aligned_cols=96 Identities=27% Similarity=0.530 Sum_probs=90.6
Q ss_pred eEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec-CCCccccCC
Q 013818 119 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 197 (436)
Q Consensus 119 W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~ 197 (436)
|++++.++||++|+.+.+.+.|.+++|+|+ +|+++|++|+|||+|++|+.|.+.++.|.||||||+||. +|+|+.+|+
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 899999999999999999999999999997 669999999999999999999888899999999999996 999999997
Q ss_pred ccccccccccCCeeeecCeEEE
Q 013818 198 TQLRNVKIKSLPCFEQEGMIWI 219 (436)
Q Consensus 198 ~~~~~~~l~~~pv~e~~G~I~v 219 (436)
. ..|++||+++.+|.|||
T Consensus 80 ~----~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 T----EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred C----CCcceEeEEEECCEEEE
Confidence 4 47999999999999998
No 25
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.91 E-value=1.4e-24 Score=180.12 Aligned_cols=97 Identities=21% Similarity=0.459 Sum_probs=89.2
Q ss_pred eEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec-CCCccccCC
Q 013818 119 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 197 (436)
Q Consensus 119 W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~ 197 (436)
|+.++.++||++|+.+.+.+.|++++|+|+.+|+++|++|+|||+|++|+.|.++++.|+||||||+||. +|.+.. |.
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~ 79 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD 79 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence 8999999999999899999999999999998899999999999999999999998899999999999996 888764 43
Q ss_pred ccccccccccCCeeeecCeEEEc
Q 013818 198 TQLRNVKIKSLPCFEQEGMIWIW 220 (436)
Q Consensus 198 ~~~~~~~l~~~pv~e~~G~I~v~ 220 (436)
. .+|++||+++++|.|||.
T Consensus 80 ~----~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 80 E----GCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred C----CccceEeEEEECCEEEEC
Confidence 2 479999999999999984
No 26
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.91 E-value=2.3e-24 Score=182.09 Aligned_cols=103 Identities=21% Similarity=0.374 Sum_probs=92.3
Q ss_pred eEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec-CCCccccCC
Q 013818 119 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 197 (436)
Q Consensus 119 W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~ 197 (436)
|+.++.++||++|+.+.+.+.|.+++++|..+|+++|+.|+|||+|++|+.|..+++.|+||||||+||. +|.|.. |.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~ 79 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR 79 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence 8899999999999999999999999999989999999999999999999999988889999999999996 666654 43
Q ss_pred ccccccccccCCeeeecCeEEEcCCCCCC
Q 013818 198 TQLRNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 198 ~~~~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
..+|++|||++++|.|||++++.++
T Consensus 80 ----~~~L~~~~v~v~~g~v~v~~~~~~~ 104 (108)
T cd03474 80 ----DCRLARYPVKVEGGDILVDTEGVLP 104 (108)
T ss_pred ----CCccceEeEEEECCEEEEeCCCcCc
Confidence 3589999999999999999975443
No 27
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.91 E-value=4e-24 Score=178.62 Aligned_cols=100 Identities=21% Similarity=0.391 Sum_probs=93.1
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceee-cCCCccccC
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 196 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~-~~G~~~~~P 196 (436)
.|+.++..+||++|..+.+.+.|.+++|+|..+|+++|++|+|||+|++|+.|.++++.|.||+|||+|| .||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 3999999999999999999999999999998799999999999999999999999999999999999999 599999988
Q ss_pred CccccccccccCCeeeecCeEEEcC
Q 013818 197 STQLRNVKIKSLPCFEQEGMIWIWP 221 (436)
Q Consensus 197 ~~~~~~~~l~~~pv~e~~G~I~v~~ 221 (436)
+. ..|++||+++.+|.|||.+
T Consensus 81 ~~----~~l~~y~v~v~~g~v~V~~ 101 (101)
T TIGR02377 81 VC----VNLKTYPVKVVDGAVYVDI 101 (101)
T ss_pred cc----CCcceEeEEEECCEEEEeC
Confidence 74 3799999999999999853
No 28
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.90 E-value=1.8e-23 Score=175.18 Aligned_cols=96 Identities=24% Similarity=0.324 Sum_probs=87.6
Q ss_pred eEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCC-CCCCccc----CCeEeCcCCCceee-cCCCc
Q 013818 119 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYS-TDGKC 192 (436)
Q Consensus 119 W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~-L~~g~~~----~~~l~CpyHgw~f~-~~G~~ 192 (436)
|+.|+.++||++|+.+.+.+.|++++|+|..+|+++|+.|+|||+|++ |+.|.+. ++.|+||||||+|| .+|+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 899999999999999999999999999998777999999999999997 7878653 24899999999999 69999
Q ss_pred cccCCccccccccccCCeeeecCeEEE
Q 013818 193 EKMPSTQLRNVKIKSLPCFEQEGMIWI 219 (436)
Q Consensus 193 ~~~P~~~~~~~~l~~~pv~e~~G~I~v 219 (436)
+..|. .+|++|||++++|.|||
T Consensus 81 ~~~p~-----~~l~~y~v~~~~g~v~v 102 (103)
T cd03529 81 LEDED-----VSVATFPVRVEDGEVYV 102 (103)
T ss_pred cCCCC-----ccEeeEeEEEECCEEEE
Confidence 99885 37999999999999998
No 29
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.90 E-value=1.5e-23 Score=172.97 Aligned_cols=93 Identities=26% Similarity=0.489 Sum_probs=86.9
Q ss_pred EeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec-CCCccccCCcc
Q 013818 121 PVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ 199 (436)
Q Consensus 121 ~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~~~ 199 (436)
.|+.++||++|+.+.+.+.|.+++|+|. +|+++|++|+|||+|++|+.|.+.++.|+||||||+||. +|+|+.+|..
T Consensus 2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~- 79 (95)
T cd03478 2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL- 79 (95)
T ss_pred ceeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc-
Confidence 3688999999999999999999999997 999999999999999999999988899999999999996 9999999974
Q ss_pred ccccccccCCeeeecCeEE
Q 013818 200 LRNVKIKSLPCFEQEGMIW 218 (436)
Q Consensus 200 ~~~~~l~~~pv~e~~G~I~ 218 (436)
..|++||+++++|.||
T Consensus 80 ---~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 ---DSLPCYEVEVEDGRVY 95 (95)
T ss_pred ---CCcceEEEEEECCEEC
Confidence 3699999999999997
No 30
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.89 E-value=2.5e-23 Score=174.92 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=90.0
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCC-CCCCCCCcccCCe----EeCcCCCceeec-CCC
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYST-DGK 191 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHr-g~~L~~g~~~~~~----l~CpyHgw~f~~-~G~ 191 (436)
.|++|+.++||++|+.+.+.+.|.+++|+|..+|+++|+.|+|||+ +++|+.|.+.++. |+||||||+||. +|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 4999999999999999999999999999998889999999999999 8999998776555 999999999995 899
Q ss_pred ccccCCccccccccccCCeeeecCeEEEcC
Q 013818 192 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 221 (436)
Q Consensus 192 ~~~~P~~~~~~~~l~~~pv~e~~G~I~v~~ 221 (436)
|+..|. .+|++||+++++|.|||.+
T Consensus 81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDDS-----GSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence 998764 3799999999999999964
No 31
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.89 E-value=3.5e-23 Score=174.42 Aligned_cols=100 Identities=20% Similarity=0.364 Sum_probs=90.6
Q ss_pred eEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccC-CeEeCcCCCceeec-CCCccccC
Q 013818 119 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKMP 196 (436)
Q Consensus 119 W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~-~~l~CpyHgw~f~~-~G~~~~~P 196 (436)
|+.++..+||++|..+.+.+. .+++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||||||+||. +|+|+..|
T Consensus 3 ~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p 80 (106)
T PRK09965 3 RIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLP 80 (106)
T ss_pred cEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCC
Confidence 899999999999998888876 88999985 9999999999999999999998887 79999999999995 99999888
Q ss_pred CccccccccccCCeeeecCeEEEcCCCC
Q 013818 197 STQLRNVKIKSLPCFEQEGMIWIWPGDE 224 (436)
Q Consensus 197 ~~~~~~~~l~~~pv~e~~G~I~v~~~~~ 224 (436)
.. .+|++|++++.+|.|||.+...
T Consensus 81 ~~----~~l~~y~v~v~~g~v~v~~~~~ 104 (106)
T PRK09965 81 AT----DPLRTYPVHVEGGDIFIDLPEA 104 (106)
T ss_pred CC----CCcceEeEEEECCEEEEEccCC
Confidence 63 4799999999999999988543
No 32
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.86 E-value=8.8e-22 Score=162.79 Aligned_cols=93 Identities=31% Similarity=0.661 Sum_probs=79.6
Q ss_pred ceEEeeeCCCCCC-CCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCc--ccCCeEeCcCCCceeecC-CCcc
Q 013818 118 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE 193 (436)
Q Consensus 118 ~W~~v~~~~~l~~-g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~~-G~~~ 193 (436)
.|++|+.++||++ |+...+.+ |...++++..+|+++|++|+|||+|++|+.|. .+++.|+||||||+||.+ |+|+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV 79 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence 4999999999998 88888888 55555555789999999999999999999994 456799999999999975 9999
Q ss_pred ccCCccccccccccCCeeeecC
Q 013818 194 KMPSTQLRNVKIKSLPCFEQEG 215 (436)
Q Consensus 194 ~~P~~~~~~~~l~~~pv~e~~G 215 (436)
.+|+.. +++.|||+++++
T Consensus 80 ~~p~~~----~l~~~~v~ve~~ 97 (97)
T PF00355_consen 80 GGPAPR----PLPLYPVKVEGD 97 (97)
T ss_dssp ESTTCS----BSTEEEEEEETT
T ss_pred cCCCCC----CcCCCCeEEeCC
Confidence 999853 789999988763
No 33
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.85 E-value=2.4e-21 Score=162.39 Aligned_cols=98 Identities=28% Similarity=0.612 Sum_probs=91.1
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCC-CCCCCCCCcccCC----eEeCcCCCceeec-CCC
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYST-DGK 191 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpH-rg~~L~~g~~~~~----~l~CpyHgw~f~~-~G~ 191 (436)
.|+.||..+||++|..+.+.+.|++|+|||..+|+++|++|+||| ++++|+.|.+.+. .+.||+|+|+||+ +|+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 499999999999999999999999999999889999999999999 8999999998765 9999999999994 999
Q ss_pred ccccCCccccccccccCCeeeecCeEEEc
Q 013818 192 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW 220 (436)
Q Consensus 192 ~~~~P~~~~~~~~l~~~pv~e~~G~I~v~ 220 (436)
|+..|. .++++|||++.+|.|||.
T Consensus 81 ~~~~~~-----~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDPD-----VSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSECS-----EBSBEEEEEECTTEEEEE
T ss_pred cCCCCC-----CcEEeEEEEEECCEEEEC
Confidence 998665 479999999999999984
No 34
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.85 E-value=5.4e-21 Score=161.52 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=87.7
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEc-CCCcEEEEecCCCCCCCC-CCCCcccC---C-eEeCcCCCceee-cCC
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE---G-RIQCPYHGWEYS-TDG 190 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~-~dG~~~a~~n~CpHrg~~-L~~g~~~~---~-~l~CpyHgw~f~-~~G 190 (436)
.|+.||..+||++|+.+.+.+.|++|+|+|. .+|+++|++|+|||.|++ |+.|.+.+ + .++||+|||+|| .+|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 4999999999999999999999999999995 689999999999999985 99998742 2 599999999999 599
Q ss_pred CccccCCccccccccccCCeeeecCeEEEc
Q 013818 191 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 220 (436)
Q Consensus 191 ~~~~~P~~~~~~~~l~~~pv~e~~G~I~v~ 220 (436)
+|+..|. ..|++|||++.+|.|||.
T Consensus 83 ~~~~~~~-----~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQ-----FSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCC-----ccEeeEeEEEECCEEEEe
Confidence 9998664 379999999999999984
No 35
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.84 E-value=6.1e-21 Score=158.17 Aligned_cols=95 Identities=25% Similarity=0.468 Sum_probs=87.6
Q ss_pred eEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec-CCCccccCC
Q 013818 119 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 197 (436)
Q Consensus 119 W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~ 197 (436)
|++++..++|++|+...+.+.|.+++|+|..+|+++|++|+|||+|++|..+..+++.|+||+|||+||. ||+|+..|+
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 8899999999999999999999999999998899999999999999999999888899999999999997 999999997
Q ss_pred ccccccccccCCeeeec-CeE
Q 013818 198 TQLRNVKIKSLPCFEQE-GMI 217 (436)
Q Consensus 198 ~~~~~~~l~~~pv~e~~-G~I 217 (436)
...|.+||+++.+ +.|
T Consensus 81 ----~~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 81 ----PRPLPKYPVKVEGDGVV 97 (98)
T ss_pred ----CCCcCEEEEEEeCCceE
Confidence 3589999999884 444
No 36
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.84 E-value=7.7e-21 Score=159.83 Aligned_cols=101 Identities=23% Similarity=0.436 Sum_probs=90.2
Q ss_pred CceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCC-eEeCcCCCceee-cCCCccc
Q 013818 117 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYS-TDGKCEK 194 (436)
Q Consensus 117 ~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~-~l~CpyHgw~f~-~~G~~~~ 194 (436)
..|+.+|..++|+++..+.+.+.+..+++++..+|+++|+.|+|||.|++|+.|.+.+. .++||+|+|.|| .||+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 46999999999999888888884436777777899999999999999999999999876 599999999999 5999999
Q ss_pred cCCccccccccccCCeeeecCeEEEcC
Q 013818 195 MPSTQLRNVKIKSLPCFEQEGMIWIWP 221 (436)
Q Consensus 195 ~P~~~~~~~~l~~~pv~e~~G~I~v~~ 221 (436)
.|+.. .|++||+++.+|.|||.+
T Consensus 83 ~p~~~----~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 83 PPAGK----TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred CCCCC----ceeEEeEEEECCEEEEec
Confidence 99864 299999999999999976
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.84 E-value=5.3e-21 Score=156.55 Aligned_cols=88 Identities=24% Similarity=0.393 Sum_probs=79.6
Q ss_pred eeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCCccccCCcccc
Q 013818 122 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 201 (436)
Q Consensus 122 v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~ 201 (436)
++.++||++|+...+.+.|++++|+|+.+|+++|+.|+|||+|++|+.|.. ++.|.||||||+||.||+|+..|+.
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~--- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAV--- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCC---
Confidence 467899999999999999999999999999999999999999999999875 4799999999999999999999974
Q ss_pred ccccccCCeeeec
Q 013818 202 NVKIKSLPCFEQE 214 (436)
Q Consensus 202 ~~~l~~~pv~e~~ 214 (436)
..|.+|++...+
T Consensus 78 -~~l~~y~v~~~~ 89 (91)
T cd03477 78 -SGLKPADDAPID 89 (91)
T ss_pred -CCCCeeEeeccc
Confidence 378899987543
No 38
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.79 E-value=3.2e-19 Score=154.50 Aligned_cols=96 Identities=21% Similarity=0.323 Sum_probs=85.8
Q ss_pred EEeeeCCCCCCCCeEEEEEcC--eeEEEEEcC---------CCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec
Q 013818 120 FPVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST 188 (436)
Q Consensus 120 ~~v~~~~~l~~g~~~~~~~~g--~~vvv~R~~---------dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~ 188 (436)
+.+|..++|++|+.+.+.+.+ .+++|+|.. +|+++|++|+|||+||+|+++. +++.|.||+|||+||.
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl 82 (126)
T cd03476 4 VKVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDP 82 (126)
T ss_pred eEEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeC
Confidence 367899999999999999887 899999974 7999999999999999999987 6789999999999996
Q ss_pred --CCCccccCCccccccccccCCeeee--cCeEEEc
Q 013818 189 --DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 220 (436)
Q Consensus 189 --~G~~~~~P~~~~~~~~l~~~pv~e~--~G~I~v~ 220 (436)
+|.|+..|+. ..|+.||+++. +|.|||.
T Consensus 83 ~tgG~~~~gPa~----~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 83 ARGGQMVSGQAT----QNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCCeEEcCCCC----CCCCeEEEEEECCCCEEEEE
Confidence 5799988863 48999999999 9999984
No 39
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.76 E-value=6.4e-18 Score=155.23 Aligned_cols=171 Identities=21% Similarity=0.214 Sum_probs=111.3
Q ss_pred EEEeecCchhhhhccCCCCCCCCCCcccccCCCCC---CceeeeecCCCCC-----------C--ccccC--CCccceec
Q 013818 246 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---PSLVKFLTPASGL-----------Q--GYWDP--YPIDMEFR 307 (436)
Q Consensus 246 ~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~~~~---p~~~~~~~~~~~~-----------~--~~~~~--~~~~~~f~ 307 (436)
.++++|||++++||++|++|++|||.++++..... +...++.....+. . ++-+. ......|.
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEGPVDRWRVIEFL 84 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeCCEEEEEEEecCCCCCCCCCCCCccEEEEEEEE
Confidence 46789999999999999999999999999864321 1111111000000 0 00000 01224678
Q ss_pred CCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhc--cCcchHHHHHHHHHHHHHhhH
Q 013818 308 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL--KHVPFMQYLWRHFAEQVLNED 385 (436)
Q Consensus 308 ~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~v~~ED 385 (436)
+|++.........+|. ......+..++.++|+++++|++++.+++++.... ...+.+...+..+...|+.||
T Consensus 85 ~P~~~~~~~~~~~~~~------~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~eD 158 (196)
T cd08878 85 LPNVLLIDPGVAPAGT------REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTETLRSGLSGAFNED 158 (196)
T ss_pred CCEEEEEecccccCCc------CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHHHHHHhhhhchhH
Confidence 8987765544333322 11123456678899999999999998887765421 112233444455778999999
Q ss_pred HHHHHHHHhhccCCCCCCCccccCCHHHHHHHHHHHHH
Q 013818 386 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 423 (436)
Q Consensus 386 ~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rrwl~~l 423 (436)
+.|+|+||+++... ...+....+|+++++||||++++
T Consensus 159 ~~i~e~q~~~~~~~-~~~~~l~~~D~~~~~~Rr~l~~~ 195 (196)
T cd08878 159 KEAVEAQQRIIDRD-PTREHLGLSDKGIVRFRRLLRRL 195 (196)
T ss_pred HHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHh
Confidence 99999999998764 22345667999999999999875
No 40
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.76 E-value=3.1e-18 Score=147.41 Aligned_cols=91 Identities=18% Similarity=0.355 Sum_probs=74.7
Q ss_pred CCCCeEEEE-EcCeeEEEEEcCCCcE--EEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCCccccCCcccccccc
Q 013818 129 KDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI 205 (436)
Q Consensus 129 ~~g~~~~~~-~~g~~vvv~R~~dG~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l 205 (436)
.+|++..+. ..+.+.++.+..+|++ +|++|+|||+||+|+.+.. ++.|+||||||+||.+|+++..|.. ..|
T Consensus 21 ~~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa~----~~L 95 (126)
T cd03471 21 NPGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPAP----LSL 95 (126)
T ss_pred CCCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCCC----CCC
Confidence 467777766 4455555555579977 8999999999999998765 4799999999999999999988863 489
Q ss_pred ccCCeeeecCeEEEcCCCC
Q 013818 206 KSLPCFEQEGMIWIWPGDE 224 (436)
Q Consensus 206 ~~~pv~e~~G~I~v~~~~~ 224 (436)
..|+|++.+|.|||.+..+
T Consensus 96 ~~y~V~vedg~I~V~~~~~ 114 (126)
T cd03471 96 ALVHATVDDDKVVLSPWTE 114 (126)
T ss_pred ceEeEEEECCEEEEEECcc
Confidence 9999999999999975443
No 41
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.71 E-value=2.8e-17 Score=142.70 Aligned_cols=94 Identities=21% Similarity=0.355 Sum_probs=81.9
Q ss_pred EeeeCCCCCCCCeEEEEEcC--eeEEEEEc---------CCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecC
Q 013818 121 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 189 (436)
Q Consensus 121 ~v~~~~~l~~g~~~~~~~~g--~~vvv~R~---------~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~ 189 (436)
.+|..+||++|+++.+.+.+ .+++++|. .+|+++|++|+|||.|++|+++. ++..|.||+|||+||.+
T Consensus 8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~ 86 (129)
T TIGR02694 8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE 86 (129)
T ss_pred EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence 68999999999999999865 47888884 59999999999999999999876 66899999999999964
Q ss_pred --CCccccCCccccccccccCCeeee-cCeEEE
Q 013818 190 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 219 (436)
Q Consensus 190 --G~~~~~P~~~~~~~~l~~~pv~e~-~G~I~v 219 (436)
|+|+..|.. .+|++||+++. +|.||.
T Consensus 87 tgG~~~~gP~~----~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 87 KGGQQVWGQAT----QNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCcEECCCCC----CCCCeeEEEEECCCeEEE
Confidence 699988863 48999999996 589994
No 42
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.70 E-value=6.9e-17 Score=139.89 Aligned_cols=92 Identities=21% Similarity=0.324 Sum_probs=81.5
Q ss_pred eCCCCCCCCeEEEEEcCeeEEEEEcC----------------------------CCcEEEEecCCCCCCCCCCCCcccCC
Q 013818 124 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 175 (436)
Q Consensus 124 ~~~~l~~g~~~~~~~~g~~vvv~R~~----------------------------dG~~~a~~n~CpHrg~~L~~g~~~~~ 175 (436)
..++|++|+.+.+.+.|++|+|+|.. +|+++|+.++|||.||.+.++.+.++
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~ 84 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG 84 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence 46889999999999999999999953 67999999999999999998876778
Q ss_pred eEeCcCCCceeecCCCccccCCccccccccccCCeeeec-CeEEE
Q 013818 176 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI 219 (436)
Q Consensus 176 ~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~pv~e~~-G~I~v 219 (436)
.|.||||||+||.+|+.+.+|+. ..|+.||++..+ +.|+|
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa~----~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPAP----LNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred EEEecCcCCEECCCCeEecCCCC----CCCCeeeEEEecCCEEEe
Confidence 99999999999999999998874 589999998766 67765
No 43
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.68 E-value=8.8e-17 Score=133.50 Aligned_cols=73 Identities=15% Similarity=0.344 Sum_probs=66.4
Q ss_pred CCCCCCCCeEEEEE-cCeeEEEEEcCCCcEEEEecCCCCCCCCCCCC--cccCCeEeCcCCCceee-cCCCccccCCc
Q 013818 125 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEKMPST 198 (436)
Q Consensus 125 ~~~l~~g~~~~~~~-~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g--~~~~~~l~CpyHgw~f~-~~G~~~~~P~~ 198 (436)
..+|++|..+.+.+ .|.+|+|++. +|+++|++|+|||.|++|+.| .++++.|+||+|||+|| .+|+++..|..
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~~ 90 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPDS 90 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCcc
Confidence 47899999999999 9999999995 999999999999999999994 58888999999999999 59999987753
No 44
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.64 E-value=3.4e-15 Score=136.14 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=98.5
Q ss_pred EEEEeecCchhhhhccCCCCCCCCCCcccccCCC-----CCCceeeeecC----CCCCCcccc-------------CCCc
Q 013818 245 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGW-----SVPSLVKFLTP----ASGLQGYWD-------------PYPI 302 (436)
Q Consensus 245 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~~-----~~p~~~~~~~~----~~~~~~~~~-------------~~~~ 302 (436)
..++++||||+++||++|+||++++|+.+++... ..+.. ....+ .......|. ....
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDHY-RVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGY 81 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCce-EEEeccCCCCChhhcccchhhhcccccccccccCe
Confidence 3578999999999999999999999999987421 11111 11110 000000010 0011
Q ss_pred cceecCCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhh-ccCcchHHHHHHHHHHHH
Q 013818 303 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-LKHVPFMQYLWRHFAEQV 381 (436)
Q Consensus 303 ~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~v 381 (436)
...+.+||+++... .....++.++|+++++|++.+.++...... .+........+..+...|
T Consensus 82 ~~~~~fPn~~~~~~-----------------~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (188)
T cd00680 82 LYLYLFPNLMIGLY-----------------PDSLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGILRQV 144 (188)
T ss_pred EEEEECCcEeeeec-----------------CCEEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHHHHHH
Confidence 24456787765432 123456778999999999999887653321 111111111122356889
Q ss_pred HhhHHHHHHHHHhhccCCCCCCCccccCCHHHHHHHHHHHHH
Q 013818 382 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 423 (436)
Q Consensus 382 ~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rrwl~~l 423 (436)
+.||+.++|+||+++.++.............+..|.+|+++.
T Consensus 145 ~~ED~~~~e~~Q~gl~s~~~~~~~l~~~E~~i~~f~~~~~~~ 186 (188)
T cd00680 145 LDEDIELCERIQRGLRSGAFRGGPLSPLEEGIRHFHRWLRRA 186 (188)
T ss_pred HHHHHHHHHHHhccccCCcCCCCCCCcccccHHHHHHHHHHh
Confidence 999999999999999987543322223456888888887754
No 45
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.60 E-value=3.5e-15 Score=136.80 Aligned_cols=88 Identities=19% Similarity=0.377 Sum_probs=74.6
Q ss_pred CCCCeEEEE-EcCeeEEEEEcCCCcE--EEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCCccccCCcccccccc
Q 013818 129 KDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI 205 (436)
Q Consensus 129 ~~g~~~~~~-~~g~~vvv~R~~dG~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l 205 (436)
++|+...+. +.|.+.++++..+|++ +|++++|||.||+|.++..+ +.+.||||||+||.+|.++..|.. ..|
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa~----~~L 147 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPAP----LSL 147 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCCC----CCC
Confidence 667777776 6777745555569999 67799999999999998754 699999999999999999998874 489
Q ss_pred ccCCeeeecCeEEEcC
Q 013818 206 KSLPCFEQEGMIWIWP 221 (436)
Q Consensus 206 ~~~pv~e~~G~I~v~~ 221 (436)
+.|++++.+|.|+|.+
T Consensus 148 ~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 148 ALVHVTVEDDKVLFSP 163 (178)
T ss_pred CeEeEEEECCEEEEEE
Confidence 9999999999999965
No 46
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.56 E-value=1e-13 Score=128.29 Aligned_cols=163 Identities=12% Similarity=0.069 Sum_probs=96.3
Q ss_pred EEEEEeecCchhhhhccCCCCCCCCCCcccccCCCCC----------CceeeeecCCC---CCCccccC---------CC
Q 013818 244 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV----------PSLVKFLTPAS---GLQGYWDP---------YP 301 (436)
Q Consensus 244 ~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~~~~----------p~~~~~~~~~~---~~~~~~~~---------~~ 301 (436)
...++++||||+++||++|+||++++|++|++..... +.......+.. .......+ ..
T Consensus 3 ~~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T cd08885 3 REEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRR 82 (190)
T ss_pred eeeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcc
Confidence 3467899999999999999999999999988642110 00000001100 00000000 00
Q ss_pred ccceecCCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhc-cCcchHHHHHHHHHHH
Q 013818 302 IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL-KHVPFMQYLWRHFAEQ 380 (436)
Q Consensus 302 ~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~ 380 (436)
....+.+||+++... + ....++.+.|+++++|++.+.++..-.... .........+..+...
T Consensus 83 ~~~~~iFPN~~i~~~----~-------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (190)
T cd08885 83 LVLFAIFPTHLLALT----P-------------DYVWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKALLDA 145 (190)
T ss_pred eEEEEECCcEEEEec----C-------------CeEEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHHHHHH
Confidence 112346787766432 1 123455678999999999887654321110 0111112223335678
Q ss_pred HHhhHHHHHHHHHhhccCCCCCCCccccCCHHHHHHHHHHHHH
Q 013818 381 VLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 423 (436)
Q Consensus 381 v~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rrwl~~l 423 (436)
|+.||..++|.+|+++.++..........+.++..|.+|+++.
T Consensus 146 v~~ED~~~~e~~Q~Gl~S~~~~~g~l~~~E~~i~~fh~~l~~~ 188 (190)
T cd08885 146 INDEDRLVVEGVQRGLGSRFAVPGRLSHLERPIWQFQRYLASR 188 (190)
T ss_pred HHHHHHHHHHHhcccccCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 9999999999999999986543222224577888899997753
No 47
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.50 E-value=2.7e-13 Score=124.56 Aligned_cols=161 Identities=18% Similarity=0.199 Sum_probs=96.5
Q ss_pred EEEEeecCchhhhhccCCCCCCCCCCcccccCCCCCCc-eeeeecCCC-------C-------CCccccCC-Cc-cceec
Q 013818 245 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPS-LVKFLTPAS-------G-------LQGYWDPY-PI-DMEFR 307 (436)
Q Consensus 245 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~~~~p~-~~~~~~~~~-------~-------~~~~~~~~-~~-~~~f~ 307 (436)
..++++||||+++||++|+||++++|++|++....... ..+...+.. . ...-|... .. ...+.
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYTL 83 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCCceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEEEE
Confidence 46789999999999999999999999999864211010 001100000 0 00001000 00 12345
Q ss_pred CCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCc-chHHHHHHHHH-HHHHhhH
Q 013818 308 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV-PFMQYLWRHFA-EQVLNED 385 (436)
Q Consensus 308 ~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~-p~~~~~~~~~~-~~v~~ED 385 (436)
+||+++... .....+..+.|.++++|.+.+.++.......... ......+ .+. ..|..||
T Consensus 84 FPN~~i~~~-----------------~~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ED 145 (185)
T cd08887 84 FPNVSLLVQ-----------------PDHLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNW-DFLMAVVLDED 145 (185)
T ss_pred CCceEEEec-----------------CCeEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHH-HHHHhhhHHHH
Confidence 777765432 1123456679999999999887764322111111 1111222 233 6899999
Q ss_pred HHHHHHHHhhccCCCCCCCccccCCHHHHHHHHHHHHH
Q 013818 386 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 423 (436)
Q Consensus 386 ~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rrwl~~l 423 (436)
..++|.+|+++.++...+......+..+..|.+|+++.
T Consensus 146 ~~~~e~~Q~Gl~s~~~~~~~l~~~E~~i~~fh~~~~~~ 183 (185)
T cd08887 146 FEVAEEIQRGLASGANDHLTFGRNESALQHFHRWLERA 183 (185)
T ss_pred HHHHHHHhhhhhcCCCCceEeecCCHHHHHHHHHHHHH
Confidence 99999999999987654433345677888999998754
No 48
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.49 E-value=1.2e-13 Score=126.25 Aligned_cols=93 Identities=20% Similarity=0.265 Sum_probs=78.6
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcC----------------------------------CCcEEEEecCCCCC
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHR 163 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~----------------------------------dG~~~a~~n~CpHr 163 (436)
.|+.| ..++|++|+.+.+.+.|.+++|+|.. +++++|++++|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 36677 78999999999999999999999851 48999999999999
Q ss_pred CCCCCC-Cccc-CCeEeCcCCCceeecCCCccccCCccccccccccCCeeeecC
Q 013818 164 ACPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEG 215 (436)
Q Consensus 164 g~~L~~-g~~~-~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~pv~e~~G 215 (436)
||.+.+ +... .+.|.|||||++||.+|+.+..|+. ..|..||++..++
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~----~~L~~~~~~~~~~ 168 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAP----LNLPVPPYKFLSD 168 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCCC----CCCCCCCEEEcCC
Confidence 998765 3332 4689999999999999999998874 4899999986554
No 49
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.49 E-value=5.8e-13 Score=121.94 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=95.8
Q ss_pred EEEEEeecCchhhhhccCCCCCCCCCCcccccCCCCCCceee-------eecCCCC-CCccccCCC--ccceecCCeeEE
Q 013818 244 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVK-------FLTPASG-LQGYWDPYP--IDMEFRPPCMVL 313 (436)
Q Consensus 244 ~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~~~~p~~~~-------~~~~~~~-~~~~~~~~~--~~~~f~~P~~~~ 313 (436)
...+++++|||+++||++|+||++++|++|++.......... ...+... ....+.... ....+.+||+++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~i 82 (175)
T cd08883 3 RREYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYATYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLML 82 (175)
T ss_pred cEEeeeecCceEEehhcCCcccCcccchhHHhhcccCceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCEee
Confidence 346788999999999999999999999998854211000000 0001000 011111111 113456888876
Q ss_pred EEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcchHHHHHHHHHHHHHhhHHHHHHHHH
Q 013818 314 STIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQ 393 (436)
Q Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~ED~~ile~qq 393 (436)
... | . ...++.+.|+++++|++.+.++..... ..........+ . .+.|+.||..|+|.+|
T Consensus 83 ~~~----~------------~-~~~~~~~~P~~p~~t~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~v~~ED~~i~e~vQ 142 (175)
T cd08883 83 NRY----P------------P-GMDVNVVLPLGPERCKVVFDYFVDDSD-GSDEAFIAESI-E-SDRVQKEDIEICESVQ 142 (175)
T ss_pred eec----C------------C-eEEEEEEEeCCCCcEEEEEEEEEeccc-cchhHHHHHHH-H-HHHHHHHHHHHHHHHh
Confidence 532 1 1 233455789999999998877643221 01111112222 2 5789999999999999
Q ss_pred hhccCCCCC-CCccccCCHHHHHHHHHHHHH
Q 013818 394 ERMNNGANV-WNLPVGYDKLGVRYRLWRDAL 423 (436)
Q Consensus 394 ~~l~~g~~~-~~l~~~aD~~~v~~Rrwl~~l 423 (436)
++|.++... ..+....+.++..|.+|+++.
T Consensus 143 ~Gl~S~~~~~G~l~~~~E~~v~~Fh~~l~~~ 173 (175)
T cd08883 143 RGLESGAYDPGRFSPKRENGVHHFHRLLAQA 173 (175)
T ss_pred hhhcCCCCCCCCCCCccchHHHHHHHHHHHh
Confidence 999987532 222223367788899997754
No 50
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.45 E-value=1.9e-12 Score=121.68 Aligned_cols=167 Identities=13% Similarity=0.026 Sum_probs=97.8
Q ss_pred CcEEeEEEEEEeecCchhhhhccCCCCCCCCCCcccccC-----CCCCCc-------eeee----------ecCCCC---
Q 013818 238 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK-----GWSVPS-------LVKF----------LTPASG--- 292 (436)
Q Consensus 238 ~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~-----~~~~p~-------~~~~----------~~~~~~--- 292 (436)
.++......++++||||+++||++|+||++++|+++... ....+. .... ......
T Consensus 7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
T cd08884 7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVA 86 (205)
T ss_pred hcEEccceEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCccc
Confidence 455556678899999999999999999999999976531 000000 0000 000000
Q ss_pred --CCccccCC--CccceecCCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcc
Q 013818 293 --LQGYWDPY--PIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP 368 (436)
Q Consensus 293 --~~~~~~~~--~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p 368 (436)
+.+..... .....+.+||+++... .....++.+.|+++++|++.+.++......... .
T Consensus 87 p~~~~~~~~~~~~~~~~~lfPN~~~~~~-----------------~d~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~-~ 148 (205)
T cd08884 87 PPLPGLTEADDRGALYYTLYPNSFLHLH-----------------PDHVVTFRVLPLSPDETLVRCKWLVHPDAVEGV-D 148 (205)
T ss_pred CCCCCCCccccCceEEEEeCCcEEEEEc-----------------CCEEEEEEEEeCCCCceEEEEEEEECCchhccc-c
Confidence 00000000 1123345777765432 123446667999999999988776532221111 1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhhccCCCCCCCccccCCHHHHHHHHHHHH
Q 013818 369 FMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA 422 (436)
Q Consensus 369 ~~~~~~~~~~~~v~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rrwl~~ 422 (436)
+.......+.+.|..||..|+|.+|+++.++..........+.++..|.+|+.+
T Consensus 149 ~~~~~~~~~~~~v~~ED~~i~e~vQ~Gl~S~~~~~g~l~~~E~~v~~F~~~~~~ 202 (205)
T cd08884 149 YDLDDLVEVWDATNRQDWAICERNQRGVNSPAYRPGPYSPMEGGVLAFDRWYLE 202 (205)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcccccCCCcCCCCcCCccHHHHHHHHHHHH
Confidence 111222346689999999999999999998654321222346777788888764
No 51
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.44 E-value=9.8e-13 Score=121.35 Aligned_cols=160 Identities=14% Similarity=0.019 Sum_probs=94.3
Q ss_pred EEEEEeecCchhhhhccCCCCCCCCCCcccccCCCCCCceeeeec-----------CCCCCCccccCCCccceecCCeeE
Q 013818 244 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLT-----------PASGLQGYWDPYPIDMEFRPPCMV 312 (436)
Q Consensus 244 ~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~~~~p~~~~~~~-----------~~~~~~~~~~~~~~~~~f~~P~~~ 312 (436)
...++++||||+++||++|+||++++|+.+++............. +................+.+||++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 82 (182)
T cd08886 3 RLTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMDTYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPNTM 82 (182)
T ss_pred eEEEEeecccEEEEecCCccccCcccChhHHhcccccccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCCEE
Confidence 356789999999999999999999999998854211111011000 000000000001112345678877
Q ss_pred EEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcchHHHHHHHHHHHHH-hhHHHHHHH
Q 013818 313 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLG 391 (436)
Q Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~ED~~ile~ 391 (436)
++.. |+ .....++.+.|+++++|++.+.++..- ...... ......+...|+ .||..++|+
T Consensus 83 i~~~----~~-----------~~~~~~~~~~P~~p~~t~~~~~~~~~~--~~~~~~--~~~~~~~~~~v~~~ED~~l~e~ 143 (182)
T cd08886 83 LNVY----PG-----------AGNMGVINIIPVDAETTLQHYDFYFRD--EELTDE--EKELIEYYRQVLQPEDLELVES 143 (182)
T ss_pred EEee----CC-----------CCeEEEEEEEeCCCCeEEEEEEEEecC--CCccHH--HHHHHHHHHHhcchhhHHHHHH
Confidence 6542 11 012345668999999999987765321 111111 111224567787 999999999
Q ss_pred HHhhccCCCCCC-Ccc------ccCCHHHHHHHHHHHH
Q 013818 392 QQERMNNGANVW-NLP------VGYDKLGVRYRLWRDA 422 (436)
Q Consensus 392 qq~~l~~g~~~~-~l~------~~aD~~~v~~Rrwl~~ 422 (436)
+|+++.++.... .+. ...+.++..|.+|+++
T Consensus 144 vQ~Gl~S~~~~~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 144 VQRGLKSRAFGQGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred HhcccccCCCCCceeccCcccCCccchhHHHHHHHHhc
Confidence 999999865322 122 1346788888898764
No 52
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.29 E-value=3.9e-12 Score=117.43 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=95.0
Q ss_pred EEEeecCchhhhhccCCCCCCCCCCcccccCCCCCCc------eeeeecCCCCCC-------------cccc--------
Q 013818 246 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPS------LVKFLTPASGLQ-------------GYWD-------- 298 (436)
Q Consensus 246 ~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~~~~p~------~~~~~~~~~~~~-------------~~~~-------- 298 (436)
.++++||||+++||++|+||++++|+++++....... ......+..... ....
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPP 90 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhccc
Confidence 4568999999999999999999999988653211111 111111111000 0000
Q ss_pred ------CCCccceecCCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcchHHH
Q 013818 299 ------PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQY 372 (436)
Q Consensus 299 ------~~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~ 372 (436)
.......+.+||+++... ++ + ..++.+.|+++++|.+.+..+...... ..+.+.+
T Consensus 91 ~~~~~~~~~~~~~~iFPn~~i~~~----~~------------~-~~~~~~~P~~p~~t~~~~~~~~~~~~~--~~~~~~~ 151 (209)
T PF00848_consen 91 GLPDDQRMGYRNYVIFPNLSIIVY----PD------------H-FTVRTIIPIGPDRTEVWSWWFVPKDEG--APPEFRE 151 (209)
T ss_dssp HHHHHHHTSEEEEEETTTEEEEE-----TT------------T-TEEEEEEEESTTEEEEEEEEEEETT----STHHHHH
T ss_pred cccccccccccceeeCCCEEEEec----cc------------c-cEEEEEEECCCCeEEEEEEEEEeCCcc--cchhhHH
Confidence 001123466888876532 11 1 125677999999999998776543211 2222233
Q ss_pred HHHHHHHH---HHhhHHHHHHHHHhhccCCCC-CCCccccCCHHHHHHHHHHHHH
Q 013818 373 LWRHFAEQ---VLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDAL 423 (436)
Q Consensus 373 ~~~~~~~~---v~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rrwl~~l 423 (436)
.+...... |+.||..++|++|+++.++.. ...+....|..+..|++|++++
T Consensus 152 ~~~~~~~~~~~~~~ED~~~~e~~Q~gl~s~~~~~~~~~~~~E~~v~~f~~~~~~~ 206 (209)
T PF00848_consen 152 ARIRNWDRFFGVFAEDIEIVERQQRGLRSRGFDPGRLSGTSERGVRHFHRWWRRY 206 (209)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHHHHHHTTSSTSCTSEESSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 33222233 899999999999999988543 2223457888999999886654
No 53
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.28 E-value=1.9e-11 Score=110.23 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=54.4
Q ss_pred cCCCcEEEEecCCCCCCCCCCC---------------CcccCCeEeCcCCCceeec-CC-CccccCCccccccccccCCe
Q 013818 148 GKDGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPC 210 (436)
Q Consensus 148 ~~dG~~~a~~n~CpHrg~~L~~---------------g~~~~~~l~CpyHgw~f~~-~G-~~~~~P~~~~~~~~l~~~pv 210 (436)
+.+|+++|++++|||+||+|.. |...++.|.||||||+||. +| ..+..|+. ..|..|++
T Consensus 72 Gp~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~----~pLp~~~L 147 (171)
T cd03475 72 GPNKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAP----RPLPAVIL 147 (171)
T ss_pred CCCCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCC----CCcCEeEE
Confidence 3589999999999999998763 3445789999999999996 45 56666764 47899998
Q ss_pred eee--cCeEEE
Q 013818 211 FEQ--EGMIWI 219 (436)
Q Consensus 211 ~e~--~G~I~v 219 (436)
+.. .|.||+
T Consensus 148 ~~d~~~d~iyA 158 (171)
T cd03475 148 EYDSSTDDLYA 158 (171)
T ss_pred EEeCCCCcEEE
Confidence 876 378886
No 54
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=99.03 E-value=3.9e-10 Score=103.67 Aligned_cols=79 Identities=25% Similarity=0.352 Sum_probs=61.2
Q ss_pred CeeEEEEEcCCCc-----EEEEecCCCCCCCCCCC-CcccCCeEeCcCCCceeecCCCccccCCccccccccccCCeeee
Q 013818 140 EEPWVIFRGKDGI-----PGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ 213 (436)
Q Consensus 140 g~~vvv~R~~dG~-----~~a~~n~CpHrg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~pv~e~ 213 (436)
+.+...+++.+|. +.|++.+|+|.||.+.+ +....+.|.|||||++||.+|+.+..|+. ..|..+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA~----~~L~~~~~~~~ 158 (177)
T COG0723 83 GPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPAP----RPLPIPPLEYD 158 (177)
T ss_pred cccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCCC----CCcCCceEEEe
Confidence 4455555555554 44999999999999999 55567999999999999999999999984 47888888766
Q ss_pred cCeE-EEcCC
Q 013818 214 EGMI-WIWPG 222 (436)
Q Consensus 214 ~G~I-~v~~~ 222 (436)
.+.+ .+-.+
T Consensus 159 ~d~~~~~~~~ 168 (177)
T COG0723 159 SDKLYLIGLG 168 (177)
T ss_pred CCceEEEEec
Confidence 6633 34343
No 55
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=98.94 E-value=3.3e-09 Score=86.99 Aligned_cols=88 Identities=36% Similarity=0.769 Sum_probs=65.5
Q ss_pred ecCCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccc-hhhccCcchHHHHHHHH-HHHHHh
Q 013818 306 FRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDF-ASVLKHVPFMQYLWRHF-AEQVLN 383 (436)
Q Consensus 306 f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~-~~~~~~~p~~~~~~~~~-~~~v~~ 383 (436)
|.+||++.+.... .....++.+++++++|+|+++++||+++++.++| ..+.+.+| .++.++ ..+|++
T Consensus 1 F~pPc~v~~~~~~--------~~~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P---~wl~H~~~n~VLd 69 (92)
T PF08417_consen 1 FIPPCLVRSTEEG--------PKKKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIP---RWLSHLTSNKVLD 69 (92)
T ss_pred CCCCEEEEEeccc--------cccCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCC---HHHHHHhhCcccH
Confidence 6799998766111 0112334578889999999999999999999998 34445556 444444 489999
Q ss_pred hHHHHHHHHHhhccC-CCCCCC
Q 013818 384 EDLRLVLGQQERMNN-GANVWN 404 (436)
Q Consensus 384 ED~~ile~qq~~l~~-g~~~~~ 404 (436)
||+.++..||+.+.. |.+.|.
T Consensus 70 ~Dl~lLh~Qe~~l~~~g~~~W~ 91 (92)
T PF08417_consen 70 QDLYLLHGQERRLAREGADNWQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHhccCcCC
Confidence 999999999999987 766663
No 56
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.91 E-value=2.9e-09 Score=101.33 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=29.0
Q ss_pred EEEEeecCchhhhhccCCCCCCCCCCc--ccccC
Q 013818 245 IVMELPIEHGLLLDNLLDLAHAPFTHT--STFAK 276 (436)
Q Consensus 245 ~~~~~~~nwk~~~EN~~D~~H~~~vH~--~t~~~ 276 (436)
.++.+++|||+.+||+.|.||++++|. .||+.
T Consensus 4 ~~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~ 37 (222)
T cd08880 4 YRQRIPGNWKLYAENVKDPYHASLLHLFFVTFGL 37 (222)
T ss_pred eeeecCCCcHHHHHhccCcchHHHHhhhheeeec
Confidence 457889999999999999999999999 88865
No 57
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.76 E-value=4.5e-08 Score=94.52 Aligned_cols=85 Identities=9% Similarity=-0.036 Sum_probs=52.4
Q ss_pred EEEEeec--CCCCceeeeeeeeccchhhccCc------chHHHHHHHH--HHHHHhhHHHHHHHHHhhccCCCCCCCccc
Q 013818 338 QLHVCLP--SSRKKTRLLYRMSLDFASVLKHV------PFMQYLWRHF--AEQVLNEDLRLVLGQQERMNNGANVWNLPV 407 (436)
Q Consensus 338 ~~~~~~P--~s~~~tr~~~~~~~~~~~~~~~~------p~~~~~~~~~--~~~v~~ED~~ile~qq~~l~~g~~~~~l~~ 407 (436)
.++.+.| .++++|.+...++....+..... ..+... ..+ ...|++||..+++.+|++|.++........
T Consensus 146 ~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~ED~~~~e~vQ~Gl~S~~~~~~~l~ 224 (243)
T cd08882 146 LVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDA-PELGGLGLVLDQDFSNLPAVQKGMHSRGFGGLVLA 224 (243)
T ss_pred EEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccc-cccccccchhHhHHHHHHHHHHHhccCCCCCcccC
Confidence 3445677 59999998776654332221110 011111 122 368999999999999999998654322222
Q ss_pred cCC-HHHHHHHHHHHHH
Q 013818 408 GYD-KLGVRYRLWRDAL 423 (436)
Q Consensus 408 ~aD-~~~v~~Rrwl~~l 423 (436)
... ..+..|.+|+++.
T Consensus 225 ~~EE~~I~~FH~~l~~~ 241 (243)
T cd08882 225 NQEESRIRHFHEVLDDY 241 (243)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 333 6788888988764
No 58
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.74 E-value=1.1e-08 Score=92.89 Aligned_cols=75 Identities=27% Similarity=0.392 Sum_probs=64.0
Q ss_pred eCCCCCCCCeEEEEEcCeeEEEE--------------------------EcCCCcEEEEecCCCCCCCCCCCCcccCCeE
Q 013818 124 FSTDLKDDTMVPFDCFEEPWVIF--------------------------RGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 177 (436)
Q Consensus 124 ~~~~l~~g~~~~~~~~g~~vvv~--------------------------R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l 177 (436)
...+||+|.-.++.-.|+|+++- |.++=++.++..+|+|.||......++.+.+
T Consensus 91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~ 170 (210)
T KOG1671|consen 91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGY 170 (210)
T ss_pred eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCce
Confidence 45678888888888888888873 3344567899999999999999988888899
Q ss_pred eCcCCCceeecCCCccccCCc
Q 013818 178 QCPYHGWEYSTDGKCEKMPST 198 (436)
Q Consensus 178 ~CpyHgw~f~~~G~~~~~P~~ 198 (436)
.|||||+.||..|+...+|+.
T Consensus 171 ~CPCHGSHYdasGRIrkGPAP 191 (210)
T KOG1671|consen 171 YCPCHGSHYDASGRIRKGPAP 191 (210)
T ss_pred ecccccccccccCceecCCCC
Confidence 999999999999999999973
No 59
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.68 E-value=3.6e-08 Score=96.48 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=53.0
Q ss_pred cCCCcEEEEecCCCCCCCCCCCC------c----------------------cc---CCeEeCcCCCceeecC--CCccc
Q 013818 148 GKDGIPGCVQNTCAHRACPLHLG------S----------------------VN---EGRIQCPYHGWEYSTD--GKCEK 194 (436)
Q Consensus 148 ~~dG~~~a~~n~CpHrg~~L~~g------~----------------------~~---~~~l~CpyHgw~f~~~--G~~~~ 194 (436)
++++.|.||+.+|+|+||++..- . -. .+.|.|||||++||.+ |+.+.
T Consensus 173 Gp~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~ 252 (321)
T TIGR03171 173 GPNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLT 252 (321)
T ss_pred CCCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeC
Confidence 46789999999999999998331 0 00 1489999999999963 57999
Q ss_pred cCCccccccccccCCeeee--cCeEEEc
Q 013818 195 MPSTQLRNVKIKSLPCFEQ--EGMIWIW 220 (436)
Q Consensus 195 ~P~~~~~~~~l~~~pv~e~--~G~I~v~ 220 (436)
+|+.+ .|..++++.. .|.|++-
T Consensus 253 GPA~r----pLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 253 GPTVR----PLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred CCCCC----CCCcceEEEeCCCCeEEEE
Confidence 99854 6888888765 4677763
No 60
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=98.61 E-value=1.4e-07 Score=90.76 Aligned_cols=31 Identities=32% Similarity=0.273 Sum_probs=28.1
Q ss_pred EEEEeecCchhhhhccCCCCCCCCCCccccc
Q 013818 245 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 275 (436)
Q Consensus 245 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~ 275 (436)
.++.++||||+.+||+.|.||++++|.+++.
T Consensus 4 ~~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 4 HRYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred eEEEeeceEEEEeeecCccccCccccHHHHH
Confidence 4678999999999999999999999998774
No 61
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.49 E-value=3.8e-07 Score=85.84 Aligned_cols=132 Identities=14% Similarity=0.015 Sum_probs=71.0
Q ss_pred EEEEEeecCchhhhhccC-CCCCCCCCCcccccCCCCCCceeeeecCCCCC------Cccc--cCC-CccceecCCeeEE
Q 013818 244 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGL------QGYW--DPY-PIDMEFRPPCMVL 313 (436)
Q Consensus 244 ~~~~~~~~nwk~~~EN~~-D~~H~~~vH~~t~~~~~~~p~~~~~~~~~~~~------~~~~--~~~-~~~~~f~~P~~~~ 313 (436)
..++.++||||+++||++ |.||++++|.+++........ ........+. .|.. ... .....+.+||+.+
T Consensus 8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~GHg~~~~~~~~~~~~iFPN~~~ 86 (206)
T cd08881 8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEAGLPPDA-ADLPPIDLGLQFTAPWHGHGLGFFLDSPQHGTIFPNLSF 86 (206)
T ss_pred cEEEEecCcceehhhccccccccchhhhHHHHHhhCCccc-ccCCCCCCCcEEEeCCCCeEEEEeccCcceeeECCcchh
Confidence 467889999999999998 999999999988743211100 0000000000 0000 000 0011223444432
Q ss_pred EEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcchHHHHHHHHHHHH-------HhhHH
Q 013818 314 STIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQV-------LNEDL 386 (436)
Q Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v-------~~ED~ 386 (436)
... . ...+....|.++++|.+.+.++... ..+ +.++..+....... -.||.
T Consensus 87 ~~~-----------------~-~~~~r~~~P~gp~~tev~~~~~~~k--da~--e~~~~~~~~~~~~~~gpaG~~~~DD~ 144 (206)
T cd08881 87 LPG-----------------Y-FNTLRVWHPRGPDETEVWTWTLVDK--DAP--EEVKDRVRRQYTRTFGPAGTFEQDDG 144 (206)
T ss_pred hhc-----------------c-CceEEEEEeCCCCeEEEEEEEEecC--CCC--HHHHHHHHHHHHhccCCcCCCcCchH
Confidence 110 0 2335556899999999776555321 111 12222222222332 24999
Q ss_pred HHHHHHHhhccC
Q 013818 387 RLVLGQQERMNN 398 (436)
Q Consensus 387 ~ile~qq~~l~~ 398 (436)
++++.+|+++..
T Consensus 145 e~~e~~Q~g~~~ 156 (206)
T cd08881 145 ENWEEITRVARG 156 (206)
T ss_pred HHHHHHHHhhcc
Confidence 999999999874
No 62
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=98.34 E-value=1.3e-06 Score=81.95 Aligned_cols=186 Identities=18% Similarity=0.214 Sum_probs=95.3
Q ss_pred CCcEEeEEEEEEeecCchhhhhccCCCCCCCCCCccccc---CCCCCC---------ceeeeecCCCCCCccccCCC---
Q 013818 237 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA---KGWSVP---------SLVKFLTPASGLQGYWDPYP--- 301 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~---~~~~~p---------~~~~~~~~~~~~~~~~~~~~--- 301 (436)
.+..+. .....+.|||.+.+||.+|+.|+ |+|+.+.- ..+..| ..++......++.|..+.+.
T Consensus 21 ~~~~~~-g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~~~~~~~ 98 (240)
T PF11723_consen 21 DDIVIF-GMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMDRLTEHY 98 (240)
T ss_dssp TTEEEE-EEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE-CHHHE
T ss_pred CcceEE-eeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeeecccccc
Confidence 344444 45678999999999999999998 99985421 111111 11122222334444332110
Q ss_pred --c----------cceecCCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcch
Q 013818 302 --I----------DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF 369 (436)
Q Consensus 302 --~----------~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~ 369 (436)
+ ...-..|..+...+++.-||-+..... -..++.++-..+|+++++.+++..+...-. ..++...
T Consensus 99 ~pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~V~~~--P~p~~~qyEwYVPID~~~h~Y~q~l~~~~~-t~ee~~~ 175 (240)
T PF11723_consen 99 EPIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLMVENW--PYPDFTQYEWYVPIDEDTHRYFQLLGKVCP-TEEERKA 175 (240)
T ss_dssp EEESEEEETTEEEEE-BESSBE--SEEEEETTTEEEEES---SSTTEEEEEEEEEEETTEEEEEEEEEEE-S-SHHHHHH
T ss_pred eEEEecccCCceeecCCCCCceeEEEeeEeccceeecccC--CCCCeeEEEEEEEecccceeeEeEEeeecC-CHHHHHH
Confidence 0 000001222222223333331110000 014567777779999999999876654321 1111111
Q ss_pred ----HHHHHH-HHHHHHHhhHHHHHHHHHhhccCCCC-CCCccccCCHHHHHHHHHHHHHHccC
Q 013818 370 ----MQYLWR-HFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGA 427 (436)
Q Consensus 370 ----~~~~~~-~~~~~v~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rrwl~~l~~g~ 427 (436)
+...|+ .+...+.+.|+...|+.|+=...+.. ..|.....|..++++||...+..+|.
T Consensus 176 f~~~f~~~~~~~~l~gFN~~D~wAREamq~fY~d~~Gw~~E~L~~~D~sIi~WRkLas~~nrgI 239 (240)
T PF11723_consen 176 FEYEFEEQWKPLALHGFNDDDIWAREAMQPFYADDTGWDREQLFEPDKSIIAWRKLASEHNRGI 239 (240)
T ss_dssp HHHHHHHTHHHHTTTTTTHHHHHHHHHHHHHHHTSHHHHH----GGGHHHHHHHHHHHHH-SEB
T ss_pred HHHHHHHHhHHhhccCCCchhHHHHHHhhhhhhccCCCCHHHhcCcchhHHHHHHHHHHhhccC
Confidence 112222 23456788999999999977665321 12466789999999999999888774
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.70 E-value=0.017 Score=60.12 Aligned_cols=38 Identities=34% Similarity=0.829 Sum_probs=34.5
Q ss_pred CCCCCCCCCcccCCeEeCcCCCceee-cCCCccccCCcc
Q 013818 162 HRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMPSTQ 199 (436)
Q Consensus 162 Hrg~~L~~g~~~~~~l~CpyHgw~f~-~~G~~~~~P~~~ 199 (436)
|.|+||..|-...++++||+||..|+ .+|....-|+..
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~ 39 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLD 39 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCcc
Confidence 89999999977789999999999999 599999999854
No 64
>PRK14127 cell division protein GpsB; Provisional
Probab=89.85 E-value=0.93 Score=38.25 Aligned_cols=43 Identities=30% Similarity=0.493 Sum_probs=24.7
Q ss_pred hHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 5 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
+.|-+-|..+|.++. +|-+|++.|++|+++...++.-.+++++
T Consensus 26 ~EVD~FLd~V~~dye---~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 26 DEVDKFLDDVIKDYE---AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457777777777754 4455555555555555555544444443
No 65
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=75.95 E-value=8.1 Score=32.34 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=40.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhhc
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 69 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (436)
+...|++|++.+++|+++..++....+..|..-=+...++|++.|..|-.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~ 77 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGM 77 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCC
Confidence 46789999999999999988888888888874434468889999988854
No 66
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=75.72 E-value=11 Score=28.74 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=45.4
Q ss_pred hhhHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH
Q 013818 3 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (436)
|-+||...|.--.+=+.-...|+.+++.++.|=++=..+......||+.-+++|--||
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3456666555444444446789999999999999999999999999999988887766
No 67
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=70.81 E-value=12 Score=28.92 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=41.2
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhhc
Q 013818 16 RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 69 (436)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (436)
..+..+..++.|++.||.++++...+.-..+..++.--+-..++|+..|+++..
T Consensus 14 ~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 14 SGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 344556788899999999999888888888777765436677888888887743
No 68
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=70.68 E-value=17 Score=28.03 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=34.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHhhHHHHHHhhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVN 64 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 64 (436)
+|...|+++|.+|++||..-.-|-...+ +++...-..+++|..+.+
T Consensus 12 ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ 62 (69)
T PRK14549 12 MSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQR 62 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999887766665 355555555666655444
No 69
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=69.26 E-value=3.9 Score=33.65 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=26.9
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 013818 9 EVLNPLARDYKSIGTMKKELAELQEDLAQAHR 40 (436)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (436)
+++++..+-.++|.+|.|.+..||=||+.|+.
T Consensus 63 di~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 63 DIMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677778899999999999999999875
No 70
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=66.79 E-value=16 Score=34.29 Aligned_cols=55 Identities=27% Similarity=0.439 Sum_probs=43.6
Q ss_pred hhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhh
Q 013818 10 VLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVND 65 (436)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (436)
.||.+-+ |.+|+.||+++..+..++..|+..+....+.-..+.++.+.-.+-+|+
T Consensus 24 ~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~ 78 (207)
T PF05546_consen 24 ALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNE 78 (207)
T ss_pred HHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677766 889999999999999999999988888877777777777765544443
No 71
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=66.36 E-value=19 Score=26.47 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhH
Q 013818 18 YKSIGTMKKELAELQEDLAQAHRQVHISE 46 (436)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (436)
.+|...|+++|.+|.+||.+.+-|-..++
T Consensus 5 ~ls~~eL~~~l~~l~~elf~Lr~q~~~~~ 33 (57)
T cd00427 5 EKSDEELQEKLDELKKELFNLRFQKATGQ 33 (57)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 35789999999999999999987766654
No 72
>PRK14156 heat shock protein GrpE; Provisional
Probab=65.17 E-value=22 Score=32.63 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=39.4
Q ss_pred hHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 013818 5 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 55 (436)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (436)
..|.||..+-+-+.+ +..|++++++|++.+.++.....+-..|.......
T Consensus 21 ~~~~~~~~~~~~~~~-l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~ 70 (177)
T PRK14156 21 ETVEEVVEETPEKSE-LELANERADEFENKYLRAHAEMQNIQRRANEERQQ 70 (177)
T ss_pred HHHHHHHhhcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666555555 78899999999999999999999999998876433
No 73
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=62.92 E-value=21 Score=28.05 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=37.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhhc
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 69 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (436)
.++..+..+++.++.++.+...+.-..+..++ .|+...++|++.++.|-.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~-~l~~~~rIe~~Ar~~lgM 73 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVA-ELSRHERIEKIAKKQLGM 73 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHhcCC
Confidence 44667788888888888877777766666665 566688888899888744
No 74
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=62.89 E-value=59 Score=26.55 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=27.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 18 YKSIGTMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
.||+.+|+.|++-||+++.++-.+..-=.+|+.
T Consensus 1 Kk~~s~I~~eIekLqe~lk~~e~keaERigr~A 33 (92)
T PF07820_consen 1 KKSSSKIREEIEKLQEQLKQAETKEAERIGRIA 33 (92)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999888766666655
No 75
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=60.43 E-value=95 Score=25.88 Aligned_cols=78 Identities=19% Similarity=0.355 Sum_probs=51.3
Q ss_pred CCCCCeEEEEE--cC--eeEEEEEcCCCcEEEEecCCCCCCCCCCCCc---ccCCeEeCcCCCceeec------CCCccc
Q 013818 128 LKDDTMVPFDC--FE--EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS---VNEGRIQCPYHGWEYST------DGKCEK 194 (436)
Q Consensus 128 l~~g~~~~~~~--~g--~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~---~~~~~l~CpyHgw~f~~------~G~~~~ 194 (436)
|++|+...+.+ .| .++++++..||.+.+..|.|- ++.+. .+++.++|-.=|-+|.. .|.|--
T Consensus 2 v~Dgklh~y~y~~~G~~vrff~i~~~dg~~~va~daCe-----iC~~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGCNP 76 (102)
T PF10080_consen 2 VKDGKLHRYAYTDDGKEVRFFAIKKPDGSYRVAFDACE-----ICGPKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGCNP 76 (102)
T ss_pred ccCCcEEEEEEcCCCEEEEEEEEECCCCCEEEEEEecc-----ccCCCceEEECCEEEEecCCCEEehhhcccccCCCCc
Confidence 44555555444 23 457888889999999999874 33322 25789999999999984 344433
Q ss_pred cCCccccccccccCCeeeecCeEEEcC
Q 013818 195 MPSTQLRNVKIKSLPCFEQEGMIWIWP 221 (436)
Q Consensus 195 ~P~~~~~~~~l~~~pv~e~~G~I~v~~ 221 (436)
+| ++-.+.+|.|-|..
T Consensus 77 ~P-----------~~~~~~~~~I~I~~ 92 (102)
T PF10080_consen 77 IP-----------LPYTVDGGNIIIDQ 92 (102)
T ss_pred cC-----------CceEecCCeEEEeH
Confidence 33 14456677887743
No 76
>PRK09039 hypothetical protein; Validated
Probab=58.04 E-value=32 Score=35.03 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
|..|+.|++.|.+++++....+..+|++-.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333333
No 77
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.71 E-value=42 Score=26.11 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=27.6
Q ss_pred hhHHHHhhChhhhhccchhhHHHH-------HHHHHHHHHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 4 HEKVVEVLNPLARDYKSIGTMKKE-------LAELQEDLAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
..||-..+..++-=++=|..||++ -..|++|..+-...-..-+.|+..-|.|+.+
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345555554443333333333333 4444445555555555556677777777654
No 78
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=57.35 E-value=26 Score=27.10 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013818 22 GTMKKELAELQEDLAQAHRQVHISEARVATAL 53 (436)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (436)
=+||++|...+.||+.|=|| |-..-||-.-|
T Consensus 25 f~LRk~l~~~rqELs~aLYq-~DAA~RViArl 55 (70)
T PF08606_consen 25 FTLRKQLDQTRQELSHALYQ-HDAACRVIARL 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 37999999999999999998 45556666544
No 79
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=52.91 E-value=8.5 Score=32.48 Aligned_cols=36 Identities=33% Similarity=0.616 Sum_probs=22.5
Q ss_pred CcEEEEecCCCCCCCCCCCCccc--CCeEeCcCCCceeecC
Q 013818 151 GIPGCVQNTCAHRACPLHLGSVN--EGRIQCPYHGWEYSTD 189 (436)
Q Consensus 151 G~~~a~~n~CpHrg~~L~~g~~~--~~~l~CpyHgw~f~~~ 189 (436)
|++--+.-.|. +||-.|... -+...||+||=--+.|
T Consensus 63 g~~e~v~~~Cr---APL~~G~LC~RrD~~kCPfHG~IIpRD 100 (110)
T PF09740_consen 63 GEFEPVPHACR---APLPNGGLCPRRDRKKCPFHGKIIPRD 100 (110)
T ss_pred CccCcCchhhc---CCCCCCCcCCccCcccCCCCCcccCCC
Confidence 33333343453 566666543 3578999999888754
No 80
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=51.12 E-value=20 Score=29.92 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHhh
Q 013818 26 KELAELQEDLAQAHR-----------QVHISEARVATALDK 55 (436)
Q Consensus 26 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 55 (436)
-||.+|..-.++-|| +++++||||..|.+.
T Consensus 27 ~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQN 67 (125)
T KOG0484|consen 27 AQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQN 67 (125)
T ss_pred HHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHh
Confidence 478888877777775 789999999999764
No 81
>PRK14161 heat shock protein GrpE; Provisional
Probab=51.04 E-value=49 Score=30.44 Aligned_cols=44 Identities=30% Similarity=0.512 Sum_probs=32.1
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 013818 6 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 55 (436)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (436)
|.++++++. +..|++|+++|++.|.++++...+-..|.......
T Consensus 19 ~~~~~~~~e------i~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~ 62 (178)
T PRK14161 19 EIVETANPE------ITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDE 62 (178)
T ss_pred hhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555442 56788888888888888888888888888766433
No 82
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=48.66 E-value=66 Score=24.40 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=21.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhh
Q 013818 18 YKSIGTMKKELAELQEDLAQAHRQVHI 44 (436)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (436)
.+|...|.++|.+|++||.+-.-|-..
T Consensus 8 ~ls~~eL~~~l~~lkkeL~~lR~~~~~ 34 (66)
T PRK00306 8 ELSVEELNEKLLELKKELFNLRFQKAT 34 (66)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999887755433
No 83
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=48.05 E-value=29 Score=25.54 Aligned_cols=47 Identities=30% Similarity=0.352 Sum_probs=30.8
Q ss_pred HHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhh
Q 013818 7 VVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 64 (436)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (436)
|-|.=|.+.+=-.+++|+|+|+.+|.+++.+-. .+..++-.|.+++-
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~-----------envk~ll~lYE~Vs 48 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE-----------ENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 344445555656678899999888888876644 44466666655543
No 84
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=46.81 E-value=44 Score=28.84 Aligned_cols=47 Identities=13% Similarity=0.300 Sum_probs=31.6
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH
Q 013818 14 LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60 (436)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (436)
|.....+|..|+..|.++++++...+..+...+..|+..|.++..+.
T Consensus 64 L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~ 110 (133)
T PF06148_consen 64 LVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELR 110 (133)
T ss_dssp ----------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567788999999999999999999999999998888777754
No 85
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=46.70 E-value=5.6 Score=32.30 Aligned_cols=52 Identities=4% Similarity=0.082 Sum_probs=39.5
Q ss_pred ccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCC
Q 013818 113 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH 168 (436)
Q Consensus 113 ~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~ 168 (436)
+.+...||.+.. ++|+-.+++..|+.+..+-+......+|...-|++|..++
T Consensus 3 ~dl~g~WYVLe~----~pGEHLvlealgqrls~iWtS~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 3 PDLSGTWYVLED----EPGEHLVLEALGQRLSGIWTSRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp --TSSSEEEEES----STT-BEEEEETTEEEEEEBSSHHHHHHHHHTSTSS--EEE
T ss_pred CCcccceEEecC----CCCceeeHHHHhhhHHhheecHHHHHHHHHhCcccCcEee
Confidence 445678999865 5899999999999998887777778889999999888765
No 86
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=46.40 E-value=55 Score=32.83 Aligned_cols=49 Identities=22% Similarity=0.410 Sum_probs=41.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhh
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLL 68 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 68 (436)
.|.-|++++.+|+++|.+...+++++..++--+..|-+=+++|..+.=+
T Consensus 176 ~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddani 224 (323)
T PF08537_consen 176 RVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANI 224 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4677999999999999999999999999999888777777777665433
No 87
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.19 E-value=87 Score=27.54 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=22.4
Q ss_pred ChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 12 NPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
+.+.+-...+..|+.+++.++.+++.++.+....++.+...
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666666666666555555555554433
No 88
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.51 E-value=53 Score=32.22 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (436)
+...+++|..++++|.++...+.-...|+..+-.||++++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666789999999999999999999999999989998886
No 89
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=44.53 E-value=45 Score=30.09 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--HhhHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATA--LDKLAYMEA 61 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 61 (436)
...|++||+.|+++++.|..+=-+||||=.+. -.|+.+|++
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~ 78 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAA 78 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999988998664432 245666554
No 90
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=43.42 E-value=88 Score=25.30 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=35.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHhhHHHHHHhhhhhhhc
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRLLQ 69 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~ 69 (436)
+|...|+++|.+|++||.+-.-|-...+ +++...-..+++|..+.+.+-+.
T Consensus 8 lS~eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~Ek~~~ 62 (87)
T PRK00461 8 KSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNERELE 62 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999988775544432 34555556667776666655444
No 91
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=43.06 E-value=64 Score=24.15 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=23.3
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHhhhh
Q 013818 17 DYKSIGTMKKELAELQEDLAQAHRQVHIS 45 (436)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (436)
+..||..|..-++-|+.|+.++...+..-
T Consensus 19 s~lSv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 19 SLLSVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999998877665443
No 92
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=42.99 E-value=74 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhH
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISE 46 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (436)
+|...|+++|.+|.+||.+-.-|..+.+
T Consensus 7 ls~~eL~~~l~elk~eL~~Lr~q~~~~~ 34 (58)
T PF00831_consen 7 LSDEELQEKLEELKKELFNLRFQKATGQ 34 (58)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5688999999999999998888776643
No 93
>PRK04654 sec-independent translocase; Provisional
Probab=39.99 E-value=70 Score=30.17 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=36.4
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 6 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
-+-.+.+++.||.+ ...||++|.++++++..+..++..+...+.+.
T Consensus 42 ~~~~vk~El~~El~-~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~ 87 (214)
T PRK04654 42 QWDSVKQELERELE-AEELKRSLQDVQASLREAEDQLRNTQQQVEQG 87 (214)
T ss_pred HHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888877 67889988888888888888888887777644
No 94
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=39.74 E-value=1e+02 Score=25.96 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 22 GTMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
++|-.|+..|++++.+.+.....||.|..
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa 32 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSA 32 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555555555544
No 95
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.51 E-value=94 Score=31.24 Aligned_cols=41 Identities=37% Similarity=0.434 Sum_probs=18.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (436)
.+..+|++|++|++|+.+-..++.-..+..+..+..+.+.+
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 96
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=39.20 E-value=39 Score=27.31 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=38.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH-HhhhhhhhcccCCCCCCccCCCCCCChhhhHh
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME-ALVNDRLLQDRHTSGTDQTCASPSTSKQSLDI 92 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (436)
+...|+.|+...++++.++..+..+.+-|...-..+ | +-.+.+|..-++..++...-+-..|..++|+.
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~----eRK~RtHRLi~rGa~lEsi~~e~~~lT~~E~~~l 71 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKK----ERKERTHRLIERGAILESIFPEPKDLTNDEFYEL 71 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHhhcchhcCHHHHHHH
Confidence 456677777777777777777777776665544321 1 22334554434444444333444555555553
No 97
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=39.18 E-value=1.1e+02 Score=22.29 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=21.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHI 44 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (436)
+|...|.++|.+|.+||.+.+-|-..
T Consensus 5 ~s~~EL~~~l~~lr~eLf~Lr~~~~~ 30 (55)
T TIGR00012 5 KSKEELAKKLDELKKELFELRFQKAT 30 (55)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999988865433
No 98
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.16 E-value=71 Score=30.10 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH-HhhhhhhhcccCCC
Q 013818 23 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME-ALVNDRLLQDRHTS 74 (436)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 74 (436)
..++++.+|++|.++.++++..+++.+...-.++..++ ....+-|+-|++.+
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~ 181 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVA 181 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Confidence 34444445666666666666666666655444444444 23334555565544
No 99
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.88 E-value=70 Score=30.15 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVAT 51 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (436)
+..|++||++|+++|+.++++.-...+.++.
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~ 125 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQ 125 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3566666666666666666555444443333
No 100
>PRK11637 AmiB activator; Provisional
Probab=37.80 E-value=99 Score=32.27 Aligned_cols=7 Identities=0% Similarity=-0.045 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 013818 264 AHAPFTH 270 (436)
Q Consensus 264 ~H~~~vH 270 (436)
|..-|.|
T Consensus 371 ~~t~Y~~ 377 (428)
T PRK11637 371 DMSLYGY 377 (428)
T ss_pred cEEEccC
Confidence 3333444
No 101
>COG5570 Uncharacterized small protein [Function unknown]
Probab=36.23 E-value=49 Score=24.06 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=25.8
Q ss_pred hhhHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhh
Q 013818 3 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 43 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (436)
+-+++-|.+|.=+-|-..|..||+.-..|.||+.+-..|.|
T Consensus 17 le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~~ 57 (57)
T COG5570 17 LEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQMH 57 (57)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34566666666666666677777666667776666555543
No 102
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=35.28 E-value=37 Score=31.66 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 013818 23 TMKKELAELQEDLAQAHRQVHI 44 (436)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~ 44 (436)
.||+||++|.++|+++......
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999998776
No 103
>PRK14154 heat shock protein GrpE; Provisional
Probab=35.26 E-value=1.2e+02 Score=28.60 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=18.0
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013818 17 DYKSIGTMKKELAELQEDLAQAHRQVHISEARV 49 (436)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (436)
++-++..|+.+|+.|++++...+.+...+.|-.
T Consensus 50 ~~~~~~~l~~el~~le~e~~elkd~~lRl~ADf 82 (208)
T PRK14154 50 EFPSREKLEGQLTRMERKVDEYKTQYLRAQAEM 82 (208)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665555555554444433
No 104
>PRK14147 heat shock protein GrpE; Provisional
Probab=35.18 E-value=1.1e+02 Score=27.94 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
+..|++|+++|++.+.++.....+-..|..........
T Consensus 27 l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~ 64 (172)
T PRK14147 27 VESLRSEIALVKADALRERADLENQRKRIARDVEQARK 64 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888766444333
No 105
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=35.00 E-value=1.7e+02 Score=27.96 Aligned_cols=67 Identities=22% Similarity=0.204 Sum_probs=48.7
Q ss_pred hhhHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhhc
Q 013818 3 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 69 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (436)
+|+++.+.=+|.--=.-.|++++++|..+...++++..+-+.++.++.........+++-..-.+..
T Consensus 15 ~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~ 81 (225)
T COG1842 15 INELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQA 81 (225)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4555555556652222348999999999999999999999999999998877777766444444433
No 106
>PF15155 MRFAP1: MORF4 family-associated protein1
Probab=34.54 E-value=92 Score=26.14 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=26.6
Q ss_pred HHHhhChhh----hhccchhhHHHHHHHHHHHHHHHHHH
Q 013818 7 VVEVLNPLA----RDYKSIGTMKKELAELQEDLAQAHRQ 41 (436)
Q Consensus 7 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (436)
-||||.|.- ==.-.|..+|+.+|.|.+|-.+||-+
T Consensus 14 evevlepeedfeqfllPvi~e~RediAsL~Re~~RA~lR 52 (127)
T PF15155_consen 14 EVEVLEPEEDFEQFLLPVIHEMREDIASLTREHGRAYLR 52 (127)
T ss_pred hhcccCchhhhhhhccchHHHHHHHHHHHHHHHhHHHHH
Confidence 367787764 11245788999999999999998865
No 107
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=33.87 E-value=1e+02 Score=30.38 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=29.5
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhh
Q 013818 6 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHIS 45 (436)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (436)
...+..+-....++...+|++|-+.|.+|+++...++...
T Consensus 53 ~p~~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~ 92 (283)
T TIGR00219 53 RPREVFDGISENLKDVNNLEYENYKLRQELLKKNQQLEIL 92 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777888889999999999988875555443
No 108
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=33.64 E-value=1.4e+02 Score=31.36 Aligned_cols=39 Identities=15% Similarity=0.375 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCeeEEEEEcCC----CcEEEEecCCCCCCCCCC
Q 013818 130 DDTMVPFDCFEEPWVIFRGKD----GIPGCVQNTCAHRACPLH 168 (436)
Q Consensus 130 ~g~~~~~~~~g~~vvv~R~~d----G~~~a~~n~CpHrg~~L~ 168 (436)
+|+-..+.|.-++|++|+|.+ |+.+--...|.|---.+.
T Consensus 167 dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMV 209 (520)
T KOG2270|consen 167 DGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMV 209 (520)
T ss_pred CCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHH
Confidence 577789999999999999865 887766778888554444
No 109
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.55 E-value=1.1e+02 Score=26.57 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHH
Q 013818 24 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 59 (436)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (436)
.++|+.++++++++-+..+..-+..|+.--.|+..|
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 110
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=33.34 E-value=95 Score=26.90 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=29.6
Q ss_pred chhhHHHHhhChhhhhccc-hhhHHHHHHHHHHHHHHHHHHhhhh
Q 013818 2 LLHEKVVEVLNPLARDYKS-IGTMKKELAELQEDLAQAHRQVHIS 45 (436)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (436)
-+|+||+....+--+-.|+ ..-||+-|..+||-|.+-..-+++.
T Consensus 74 ~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L 118 (126)
T PF13118_consen 74 NLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELL 118 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4899999988875444443 4457777888888776655444443
No 111
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=33.08 E-value=62 Score=35.85 Aligned_cols=49 Identities=33% Similarity=0.455 Sum_probs=41.0
Q ss_pred hChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH
Q 013818 11 LNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60 (436)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (436)
|..-||-.. -+|--.+|.+|.++++.|-.|||.+|..|+.+-+|++-|.
T Consensus 573 le~~a~~~~-~~t~d~el~~le~~va~aaa~vq~~e~~~s~i~~ri~al~ 621 (714)
T PF04698_consen 573 LEECARQIH-SGTTDSELSELEDQVASAAAQVQQAESEVSDIESRIAALS 621 (714)
T ss_pred HHHhhhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344456544 3578899999999999999999999999999999998864
No 112
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.86 E-value=1.8e+02 Score=26.35 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=29.4
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHH
Q 013818 6 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 59 (436)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (436)
.|..-|--+........++++|...|++|+.+-+.++-..++-+..-..++..+
T Consensus 84 ~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 84 DVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444444444556666666666666666666665555555444444433
No 113
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=32.83 E-value=1.7e+02 Score=24.64 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=48.0
Q ss_pred hhHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhh
Q 013818 4 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 63 (436)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (436)
..|-+.++.-...|.+.......+|..|+.++...+....-.+.+|..-..=-.+|++++
T Consensus 59 ~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~ 118 (126)
T PF13863_consen 59 EAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVV 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356677788888888888888999999999999999998888888887765555655544
No 114
>PRK14139 heat shock protein GrpE; Provisional
Probab=32.53 E-value=1.3e+02 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 56 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (436)
+..|++|+++|++.|.++.....+...|+.......
T Consensus 41 l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~ 76 (185)
T PRK14139 41 LAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKA 76 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888888888888888888888664433
No 115
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=32.46 E-value=1.7e+02 Score=24.22 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=27.7
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhH
Q 013818 17 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 56 (436)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (436)
|--+++.+.+|+..||+|+..--+.---.-.|++.-++.+
T Consensus 50 esitle~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkvL 89 (99)
T PF11083_consen 50 ESITLEQVEKEIRELQNQLGLYLDEYEKLVRRLEKFVKVL 89 (99)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999877666655555555444433
No 116
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=32.05 E-value=46 Score=23.15 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=18.5
Q ss_pred hhhccchhhHHHHHHHHHHHHHH
Q 013818 15 ARDYKSIGTMKKELAELQEDLAQ 37 (436)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (436)
+|-+-=|.+|++-|.+||+|+.+
T Consensus 18 ~~r~dEV~~L~~NL~EL~~e~~~ 40 (42)
T PF11464_consen 18 ARRFDEVATLEENLRELQDEIDE 40 (42)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHh
Confidence 44455689999999999999975
No 117
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=31.65 E-value=95 Score=23.25 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVAT 51 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (436)
--|+...|+-|..+|++|..+....|+|+.+
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999998888888765
No 118
>PRK14164 heat shock protein GrpE; Provisional
Probab=31.64 E-value=1.3e+02 Score=28.65 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=31.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 55 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (436)
.-+..|++||++|++.|.++.....+...|......+
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~ 113 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQA 113 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999998866443
No 119
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=31.37 E-value=64 Score=24.05 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Q 013818 21 IGTMKKELAELQEDLAQAHRQVH 43 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ 43 (436)
|.+||+++++|+++.++-...-.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENN 38 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999988776554433
No 120
>TIGR02497 yscI_hrpB_dom type III secretion apparatus protein, YscI/HrpB, C-terminal domain. This model represents the conserved C-terminal domain of a protein conserved in across species in the bacterial type III secretion apparatus. This protein is designated YscI (Yop proteins translocation protein I) in Yersinia and HrpB (hypersensitivity response and pathogenicity protein B) in plant pathogens such as Pseudomonas syringae.
Probab=30.45 E-value=1.4e+02 Score=20.45 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhH---HHHHHHHhhHHHH
Q 013818 26 KELAELQEDLAQAHRQVHISE---ARVATALDKLAYM 59 (436)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 59 (436)
+++..+|..+.++--++-+.. ++++++++||.-|
T Consensus 2 ~~ll~~Q~~l~~~tv~~dL~AK~ag~~sQsvnKL~~m 38 (39)
T TIGR02497 2 EDLLQMQRALMQATVQVDLTAKVAGAMSQAVNKLVNM 38 (39)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHcc
Confidence 467788888888888877654 5566888888764
No 121
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.52 E-value=83 Score=23.32 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHI 44 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~ 44 (436)
|.+|..+...|+.++...+..+..
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ 35 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQA 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444433
No 122
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=29.52 E-value=1.3e+02 Score=27.22 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=30.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHH
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 61 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (436)
..+..++.+|++++.++.+++.+++.-..+|.....++..|..
T Consensus 22 ~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~ 64 (158)
T PF09486_consen 22 ARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT 64 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 3466677777777777777777777777777777777777653
No 123
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=29.44 E-value=29 Score=26.02 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=13.3
Q ss_pred cCCeEeCcCCCceeecC
Q 013818 173 NEGRIQCPYHGWEYSTD 189 (436)
Q Consensus 173 ~~~~l~CpyHgw~f~~~ 189 (436)
..-+|.||-||-.....
T Consensus 29 ~PvtI~CP~HG~~~~s~ 45 (60)
T PF05265_consen 29 TPVTIRCPKHGNFTCST 45 (60)
T ss_pred CceEEECCCCCcEEecc
Confidence 44589999999887754
No 124
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.39 E-value=1.7e+02 Score=25.84 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARV 49 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (436)
+..|..+|..++++|..+...+.-++.++
T Consensus 44 ~~~lE~eld~~~~~l~~~k~~lee~~~~~ 72 (143)
T PF12718_consen 44 NQQLEEELDKLEEQLKEAKEKLEESEKRK 72 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444555555555555555555554443
No 125
>PRK14151 heat shock protein GrpE; Provisional
Probab=29.34 E-value=1.6e+02 Score=27.06 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
+..|++++++|++.+.++.....+-..|...-
T Consensus 29 i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE 60 (176)
T PRK14151 29 VQELEEQLAAAKDQSLRAAADLQNVRRRAEQD 60 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666655
No 126
>PRK14163 heat shock protein GrpE; Provisional
Probab=29.24 E-value=1.5e+02 Score=28.19 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATAL 53 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (436)
+..|++++.+|.+.|.+++....+...|.....
T Consensus 49 l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~ 81 (214)
T PRK14163 49 LDQVRTALGERTADLQRLQAEYQNYRRRVERDR 81 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777776553
No 127
>PRK14162 heat shock protein GrpE; Provisional
Probab=28.84 E-value=1.4e+02 Score=27.85 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDK 55 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (436)
+..|++++++|++.|.++.....+-..|+......
T Consensus 48 l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~ 82 (194)
T PRK14162 48 IADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQ 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888888888888887787766333
No 128
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=28.67 E-value=44 Score=27.76 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=23.1
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHh
Q 013818 13 PLARDYKSIGTMKKELAELQEDLAQAHRQV 42 (436)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (436)
|.-.=...|.+|+.||..+|.||..+++|+
T Consensus 72 Pv~Gc~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 72 PVYGCVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 333344557889999999999999998774
No 129
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=28.58 E-value=81 Score=23.79 Aligned_cols=27 Identities=15% Similarity=0.442 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 24 MKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
+.++++-|+.++.+...++..++.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667777777777777666666655
No 130
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.52 E-value=1.2e+02 Score=29.27 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 23 TMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
.|++++-.+|+++.+-.+++--.+.++.
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~ 81 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLD 81 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 131
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.12 E-value=1.4e+02 Score=30.28 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=20.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhH
Q 013818 18 YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 56 (436)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (436)
..-+..++.+|+.|+.++.++-.+....+..+..+-.||
T Consensus 241 ~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 241 QAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333555555666666666555555555554444333333
No 132
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=28.05 E-value=2.2e+02 Score=25.40 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=42.7
Q ss_pred hhHHHHhhChhhhhccch-hhHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhhc
Q 013818 4 HEKVVEVLNPLARDYKSI-GTMKKELAELQEDLA----QAHRQVHISEARVATALDKLAYMEALVNDRLLQ 69 (436)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (436)
|..=|--|...+.|.||- -+|-.+|..|.+|-- +|-.|+|.+++.+...++-.. +.+.++|+
T Consensus 83 q~~rV~~Lqd~~~~hksa~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD----~Lr~kLlq 149 (152)
T PF15186_consen 83 QARRVQWLQDQAEEHKSAAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQKERD----LLRWKLLQ 149 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHh
Confidence 333455566677777654 578888888888877 999999999888777644333 45555553
No 133
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=27.68 E-value=79 Score=20.89 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 013818 24 MKKELAELQEDLAQAHRQVHISE 46 (436)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~ 46 (436)
|++|++.||..++.-...-|..|
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE 24 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELE 24 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHH
Confidence 78999999999988776665554
No 134
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=27.22 E-value=1e+02 Score=21.81 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 013818 21 IGTMKKELAELQEDLA 36 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (436)
|.+||.|+..||+++.
T Consensus 1 i~aLrqQv~aL~~qv~ 16 (46)
T PF09006_consen 1 INALRQQVEALQGQVQ 16 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 4678888877776653
No 135
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=27.13 E-value=1.2e+02 Score=23.88 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 013818 26 KELAELQEDLAQAHRQVHISEARVATALDK 55 (436)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (436)
+||+.+-+.+-++..+..+||+-|...+.+
T Consensus 7 ~ele~~~~~lk~~R~~lGLTQ~dvA~~lg~ 36 (75)
T smart00352 7 RELEAFAKTFKQRRIKLGFTQADVGLALGA 36 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 578888888999999999999999888764
No 136
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.80 E-value=1.1e+02 Score=24.87 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARV 49 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (436)
+..|+++|..|++++++...+....++++
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777766666655554
No 137
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=26.39 E-value=1.9e+02 Score=26.36 Aligned_cols=62 Identities=18% Similarity=0.374 Sum_probs=35.8
Q ss_pred CchhhHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhHHHHHHhhh
Q 013818 1 MLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHIS---EARVATALDKLAYMEALVN 64 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 64 (436)
|.+|+++.|+-++- +-..+..+++++...++++.++-.+.--. =......+.||-+|.++..
T Consensus 98 me~rE~le~~~~~~--d~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl~~ 162 (173)
T PRK00294 98 MQLREELEELQDEA--DLAGVATFKRRLKAAQDELNESFAACWDDAARREEAERLMRRMQFLDKLAQ 162 (173)
T ss_pred HHHHHHHHhhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 55677777665442 23335566777777666666554432100 1344567788888877654
No 138
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.26 E-value=97 Score=29.03 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=31.6
Q ss_pred hChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH
Q 013818 11 LNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60 (436)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (436)
++.+--|++-.+.+||+.+++|+|..+|.. ++.--.|.||.+++
T Consensus 64 ~~~~liD~ekm~~~qk~m~efq~e~~eA~~------~~d~~~lkkLq~~q 107 (201)
T COG1422 64 LQKLLIDQEKMKELQKMMKEFQKEFREAQE------SGDMKKLKKLQEKQ 107 (201)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHH
Confidence 455555666688999999999999988864 34445666666654
No 139
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=26.25 E-value=51 Score=28.73 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=24.4
Q ss_pred EecCCCCCCCCCCCCcccCCeEeCcCCCceee
Q 013818 156 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 187 (436)
Q Consensus 156 ~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~ 187 (436)
+...||-=|+||-. .+|.+.||-||-++.
T Consensus 27 L~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~ 55 (131)
T COG1645 27 LAKHCPKCGTPLFR---KDGEVFCPVCGYREV 55 (131)
T ss_pred HHhhCcccCCccee---eCCeEECCCCCceEE
Confidence 45679999999997 568999999998776
No 140
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=26.10 E-value=48 Score=25.16 Aligned_cols=45 Identities=24% Similarity=0.507 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhhccc
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDR 71 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (436)
.+..|++|+..|++||.. .++-.|+ +...| +.+.+ ...|-||.+.
T Consensus 3 ~~~~l~~ei~~L~~el~~--~r~~vS~--a~~~l--i~y~~-~~~DPll~~~ 47 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELER--ERIKVSK--ACKEL--IEYCE-STPDPLLPGP 47 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS------HHH--HHHHH--HHHHH-GTC-HHHHT-
T ss_pred HHHHHHHHHHHHHHHHcc--cceeHHH--HHHHH--HHHhc-CCCCceeCCC
Confidence 466789999999988877 4444443 22222 33333 5556666654
No 141
>PRK14155 heat shock protein GrpE; Provisional
Probab=26.05 E-value=1.9e+02 Score=27.36 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 56 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (436)
+..|++|+++|++.+.+++....+-..|......+.
T Consensus 22 l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 57 (208)
T PRK14155 22 IEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA 57 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888888888888888888888888887664443
No 142
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.01 E-value=1.2e+02 Score=23.89 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013818 25 KKELAELQEDLAQAHRQVHISEARVAT 51 (436)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (436)
|+|..-+++-|+++..++...|+||+.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777778888888777777764
No 143
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.98 E-value=1.5e+02 Score=32.23 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=30.9
Q ss_pred hhHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhH
Q 013818 4 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 56 (436)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (436)
++|+.+-|+-|-----+.+.|+++++.|+++|.+|=.+++.+.......|.+.
T Consensus 327 ~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~ 379 (557)
T COG0497 327 LDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKE 379 (557)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433334666777777777777777666666666655554443
No 144
>PRK14149 heat shock protein GrpE; Provisional
Probab=25.85 E-value=2e+02 Score=26.86 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 56 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (436)
+..|++++++|.+.|.++.....+-..|...-..+.
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~ 80 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMA 80 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999988888888664333
No 145
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=25.32 E-value=2.9e+02 Score=21.07 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.0
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHh
Q 013818 16 RDYKSIGTMKKELAELQEDLAQAHRQV 42 (436)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (436)
|+ +|+..|+++|.+|++||-.-+-|-
T Consensus 10 r~-ls~~eL~~~l~elk~elf~LRfq~ 35 (67)
T CHL00154 10 ID-LTDSEISEEIIKTKKELFDLRLKK 35 (67)
T ss_pred Hh-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 679999999999999998777553
No 146
>PRK14127 cell division protein GpsB; Provisional
Probab=25.31 E-value=91 Score=26.34 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=34.2
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHH----------H---HHHhhHHHHHHhh
Q 013818 6 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARV----------A---TALDKLAYMEALV 63 (436)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~ 63 (436)
.|.+-+-.+.+| +..|+++++.|++++.+.+.|+-.++++. . ..|.|++.||+.+
T Consensus 34 ~V~~dye~l~~e---~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 34 DVIKDYEAFQKE---IEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 455444455554 45778888888888877777766544331 1 4577777777543
No 147
>PRK14157 heat shock protein GrpE; Provisional
Probab=25.27 E-value=2e+02 Score=27.62 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 56 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (436)
+..|++|++++++.|.++.....+-..|...-..+.
T Consensus 86 l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~ 121 (227)
T PRK14157 86 LGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRF 121 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888777777777777554333
No 148
>PRK14140 heat shock protein GrpE; Provisional
Probab=25.07 E-value=2.1e+02 Score=26.71 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
+..|++++++|.+.|.++.....+-..|....
T Consensus 46 i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE 77 (191)
T PRK14140 46 IAELEAKLDELEERYLRLQADFENYKRRIQKE 77 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777776666666655
No 149
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.22 E-value=3.4e+02 Score=23.26 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 013818 22 GTMKKELAELQEDLAQAH 39 (436)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ 39 (436)
.+||.+|+.|+.+-.+|.
T Consensus 33 ~~l~~el~~l~~~r~~l~ 50 (120)
T PF12325_consen 33 ASLQEELARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444333333
No 150
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.19 E-value=5.9e+02 Score=26.88 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 23 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
+||.||..+..||+-|-|| |-+.-||-.-|.|=..
T Consensus 89 ~LRqqL~ttrQELShaLYq-hDAAcrViaRL~kE~~ 123 (506)
T KOG0289|consen 89 TLRQQLQTTRQELSHALYQ-HDAACRVIARLTKERD 123 (506)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 7999999999999999998 6677888777665433
No 151
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=24.15 E-value=1.2e+02 Score=28.53 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
+-.+..+|..|.+++.++...+-.+++..++++.|+.-
T Consensus 10 ~~~~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv 47 (251)
T COG5415 10 VTKYTADLSRLESQIHQLDVALKKSQSILSQWQSRLTV 47 (251)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34577899999999999999999999999999888754
No 152
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=24.06 E-value=1.8e+02 Score=29.32 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHHHH-----------------HHHHhhhhHHHHHHHHhhHHHH
Q 013818 21 IGTMKKELAELQEDLAQ-----------------AHRQVHISEARVATALDKLAYM 59 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 59 (436)
|.|||..|.++.++|+. +|.-+|-+.+-|-..|....+|
T Consensus 149 VDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdel 204 (405)
T KOG2010|consen 149 VDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDEL 204 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999875 4555666667777776666665
No 153
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.83 E-value=1.3e+02 Score=28.95 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=6.1
Q ss_pred hHHHHHHHHhhHHHHH
Q 013818 45 SEARVATALDKLAYME 60 (436)
Q Consensus 45 ~~~~~~~~~~~~~~~~ 60 (436)
.+..+++.-.++.+|+
T Consensus 174 v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 174 VRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333344433
No 154
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.83 E-value=1.6e+02 Score=24.71 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=27.9
Q ss_pred HHHHHHHHHHH----HHHHHhhhhHHHHHHHHhhHHHH
Q 013818 26 KELAELQEDLA----QAHRQVHISEARVATALDKLAYM 59 (436)
Q Consensus 26 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 59 (436)
-+|..|++.+. ...++.+.++.++..+|.+.++-
T Consensus 61 ~eL~~l~~k~~~~~~~~~q~i~~~~~~~~~Al~~~a~~ 98 (105)
T COG3027 61 HELLKLKEKLRDIEASLEQRIRKLDQALENALTTLAQR 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888 68888888999999998888763
No 155
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.72 E-value=3.5e+02 Score=23.23 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=14.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARV 49 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (436)
+.+.+||+++..++.++.......-.+.+.+
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444444444443333
No 156
>PRK14148 heat shock protein GrpE; Provisional
Probab=23.68 E-value=2.2e+02 Score=26.55 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
+..|++++++|.+.|.++.+...+...|....
T Consensus 49 l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE 80 (195)
T PRK14148 49 IKELEDSCDQFKDEALRAKAEMENIRKRAERD 80 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777755
No 157
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.47 E-value=2e+02 Score=28.79 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 59 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (436)
+.+.-++|+++..+|+++++++-..+..++.+-..++.+
T Consensus 129 ~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~ 167 (301)
T PF06120_consen 129 QADATRKLAEATRELAVAQERLEQMQSKASETQATLNDL 167 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777766666666555544444443
No 158
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.07 E-value=1.3e+02 Score=27.13 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHH
Q 013818 21 IGTMKKELAELQEDL 35 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~ 35 (436)
...||+|+.+|.+|+
T Consensus 42 ~~~l~~Ei~~l~~E~ 56 (161)
T PF04420_consen 42 QRQLRKEILQLKREL 56 (161)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555544
No 159
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.01 E-value=2.4e+02 Score=23.86 Aligned_cols=46 Identities=13% Similarity=0.317 Sum_probs=30.1
Q ss_pred hhhhhc--cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 13 PLARDY--KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 13 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
-++-|| .+...|-+++.+|++++..+..+....+..+...=.++..
T Consensus 65 Ql~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 65 QLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554 4566677778888888888877777777666655444444
No 160
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=22.81 E-value=1.2e+02 Score=23.79 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAH 39 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~ 39 (436)
+.+|+++|.+++..|.+|.
T Consensus 52 ~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 52 VESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555444444443
No 161
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.47 E-value=1.3e+02 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=21.3
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHh
Q 013818 16 RDYKSIGTMKKELAELQEDLAQAHRQV 42 (436)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (436)
-+.-||+.|.+.++-||+|+.+-..+.
T Consensus 22 LsllsV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 22 LSLLSVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999987765554
No 162
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.27 E-value=3.1e+02 Score=23.78 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhh
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 67 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (436)
++..+-+||..+.+.|+.|...+..=..+|.-.|+...++-+..++..
T Consensus 44 A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 44 AVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567788999999999999888777666667667666666655444443
No 163
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.24 E-value=3.9e+02 Score=25.09 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=44.7
Q ss_pred hhhHHHHhhChh-hhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHh
Q 013818 3 LHEKVVEVLNPL-ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEAL 62 (436)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (436)
+|+-+-.+=+|. +-++. +..++++|......++++-.+-+..+..+...-.+..+.++-
T Consensus 15 ~n~~~dk~EDP~~~l~q~-irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 15 LNALLDKAEDPEKMIRLI-IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHhccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555677 55555 889999999999999999999999999888877777776533
No 164
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=22.10 E-value=1.9e+02 Score=23.65 Aligned_cols=32 Identities=34% Similarity=0.446 Sum_probs=22.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
|--..++.|++-||+++.++-.+-.---+|+.
T Consensus 3 k~~s~I~~eI~kLqe~lk~~e~keAERigRiA 34 (98)
T PRK13848 3 KPSSKIREEIAKLQEQLKQAETREAERIGRIA 34 (98)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999887665544444443
No 165
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=22.07 E-value=2.4e+02 Score=22.76 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHH
Q 013818 27 ELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 61 (436)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (436)
.|++|++|+.++..++...+-+...--++...+++
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k 36 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEK 36 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666655555555443
No 166
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.95 E-value=3.1e+02 Score=26.44 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=18.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
..+..++.++..+++.+.+-+.++.....++.....++..
T Consensus 56 ~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 56 LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444444444444444444333333
No 167
>PRK09039 hypothetical protein; Validated
Probab=21.93 E-value=2.8e+02 Score=28.17 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 013818 21 IGTMKKELAELQEDLAQAHRQV 42 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~ 42 (436)
|..||+||+.||.+|..+..+.
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444333
No 168
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.91 E-value=74 Score=23.87 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=25.9
Q ss_pred EecCCCCCCCCCCCCcccCCeEeCcCCCceeecC
Q 013818 156 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 189 (436)
Q Consensus 156 ~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~ 189 (436)
-+-.||+=|..... ...+..+.||--|..+|.|
T Consensus 27 TSq~C~~CG~~~~~-~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKK-RRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCccccccc-ccccceEEcCCCCCEECcH
Confidence 47789888877776 3456899999999999865
No 169
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=21.81 E-value=2.4e+02 Score=25.39 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=27.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (436)
.++..|.+|++.+.++...+.+++--..+|..-..++.+|.
T Consensus 23 ~l~a~R~al~~a~a~la~~~~~~~a~~~~l~~~~arid~m~ 63 (158)
T TIGR02559 23 ELAERRAALQSADRELAEKVSQAEAKADRLHRHAARIDDLA 63 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666777777777777777766666666653
No 170
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=21.62 E-value=2.5e+02 Score=24.93 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=26.2
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 16 RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
-+.+++..|++++...+..|.+-..++...++.+...-..+.+
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666655333333
No 171
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.45 E-value=46 Score=24.45 Aligned_cols=25 Identities=24% Similarity=0.609 Sum_probs=20.2
Q ss_pred cCCeEeC-----cCCCceeecCCCccccCC
Q 013818 173 NEGRIQC-----PYHGWEYSTDGKCEKMPS 197 (436)
Q Consensus 173 ~~~~l~C-----pyHgw~f~~~G~~~~~P~ 197 (436)
+++.++| |||-|-|+..|.|+..+.
T Consensus 18 ~dDiVvCp~CgapyHR~C~~~~g~C~~~~c 47 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRDCWEKAGGCINYSC 47 (54)
T ss_pred CCCEEECCCCCCcccHHHHhhCCceEeccC
Confidence 4567788 599999999999987654
No 172
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.24 E-value=2.9e+02 Score=27.33 Aligned_cols=45 Identities=33% Similarity=0.465 Sum_probs=30.4
Q ss_pred hHHHHhhChhh-hhccchhhHHHHHHHHHHHHH-----HHHHHhhhhHHHHH
Q 013818 5 EKVVEVLNPLA-RDYKSIGTMKKELAELQEDLA-----QAHRQVHISEARVA 50 (436)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 50 (436)
.|.-|.-|.|- ||.. |..||.||+-+||+-- +-.+|+.+-|||-+
T Consensus 75 akLkes~~~l~dRetE-I~eLksQL~RMrEDWIEEECHRVEAQLALKEARkE 125 (305)
T PF15290_consen 75 AKLKESENRLHDRETE-IDELKSQLARMREDWIEEECHRVEAQLALKEARKE 125 (305)
T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444332 6665 9999999999998654 34567777787766
No 173
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=21.10 E-value=2.1e+02 Score=25.83 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
+..+..+++.|+..|..++.++......|+-+
T Consensus 88 ~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn 119 (158)
T PF09486_consen 88 VRAAEAELAALRQALRAAEDEIAATRRAIARN 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555544
No 174
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.80 E-value=2e+02 Score=23.84 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVAT 51 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (436)
+..|++++..|++++.+...++...++.+++
T Consensus 86 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 86 IKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777666666555543
No 175
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.77 E-value=2.7e+02 Score=31.85 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=23.6
Q ss_pred hhhHHHHhhChhhh-------hccchhhHHHHHHHHHHHHHHHHHHhhhh
Q 013818 3 LHEKVVEVLNPLAR-------DYKSIGTMKKELAELQEDLAQAHRQVHIS 45 (436)
Q Consensus 3 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (436)
|+++|+++=+..-| ..+.+..||.||+.|+.|+++.+..+-.+
T Consensus 471 L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~ 520 (980)
T KOG0980|consen 471 LNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNL 520 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44555554444333 12345666777777777777766663333
No 176
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.65 E-value=2.5e+02 Score=21.72 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=28.9
Q ss_pred hhHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 013818 4 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEA 47 (436)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (436)
-.||-.+...++-=++-|..||++-..|+.|.+.|+.+.-..+.
T Consensus 10 E~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 34555555555656666788888888888888877655444433
No 177
>PRK14143 heat shock protein GrpE; Provisional
Probab=20.51 E-value=2.7e+02 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
+..|+++++.|++.|.++.....+-..|....
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE 107 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRTSRE 107 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544
No 178
>PRK14159 heat shock protein GrpE; Provisional
Probab=20.41 E-value=2.8e+02 Score=25.50 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=32.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHH
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 57 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (436)
..+..|++++++|.+.|.++.....+-..|......+..
T Consensus 30 ~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~ 68 (176)
T PRK14159 30 VEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAM 68 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446889999999999999999999999999887644443
No 179
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.40 E-value=3.9e+02 Score=22.49 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=31.3
Q ss_pred hhhhhccchhh-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 13 PLARDYKSIGT-------MKKELAELQEDLAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 13 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
.+..+.+|++- |+..+..||.+-.....++.-.+|.|+.++.-+..
T Consensus 24 slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 24 SLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544 55567777888778888888888888877666655
No 180
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=20.27 E-value=4.7e+02 Score=21.17 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=31.4
Q ss_pred hHHHHhhChhhhhccc---------hhhHH--------HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 5 EKVVEVLNPLARDYKS---------IGTMK--------KELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 5 ~~~~~~~~~~~~~~~~---------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
+.|...+..+|||-.+ |..|| +++.+|+.++......+-...+.+...
T Consensus 11 ~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 11 KEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666665322 66666 677888888877777777666666654
No 181
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=20.16 E-value=3.5e+02 Score=20.85 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=18.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVH 43 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (436)
+|+..|.++|.+|..||..-..|..
T Consensus 11 ~s~eeL~~~l~eLK~ELf~LR~q~a 35 (69)
T COG0255 11 KSVEELEEELRELKKELFNLRFQLA 35 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888866555443
No 182
>PF14920 MTBP_C: MDM2-binding
Probab=20.08 E-value=41 Score=32.15 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=14.3
Q ss_pred CeEeCcCCCceeecCC
Q 013818 175 GRIQCPYHGWEYSTDG 190 (436)
Q Consensus 175 ~~l~CpyHgw~f~~~G 190 (436)
+..+|-|||-.|.+|.
T Consensus 15 ka~~chYHgieycLD~ 30 (251)
T PF14920_consen 15 KASVCHYHGIEYCLDD 30 (251)
T ss_pred hhhccccCCceeeccc
Confidence 5789999999999876
No 183
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.05 E-value=66 Score=34.30 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEA 47 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (436)
|..|+|||++|++|+..-..+|-..|.
T Consensus 33 ie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 33 IEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHhhcccccccchhhH
Done!