Query 013818
Match_columns 436
No_of_seqs 366 out of 2309
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 17:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 2E-53 6.9E-58 428.7 21.3 301 112-424 2-335 (349)
2 3n0q_A Putative aromatic-ring 100.0 3.3E-44 1.1E-48 367.5 23.4 311 77-424 17-398 (409)
3 2zyl_A Possible oxidoreductase 100.0 8.4E-44 2.9E-48 363.0 22.9 300 112-426 19-339 (386)
4 1z01_A 2-OXO-1,2-dihydroquinol 100.0 1.3E-43 4.5E-48 368.0 24.4 308 85-427 25-408 (446)
5 3vca_A Ring-hydroxylating diox 100.0 6.3E-44 2.2E-48 365.8 21.4 309 77-422 19-398 (412)
6 2de6_A Terminal oxygenase comp 100.0 1.6E-43 5.4E-48 361.9 19.5 298 112-428 22-377 (392)
7 3gcf_A Terminal oxygenase comp 100.0 2.2E-39 7.5E-44 326.8 23.0 302 111-431 27-384 (394)
8 3gkq_A Terminal oxygenase comp 100.0 5.1E-39 1.7E-43 323.3 23.4 302 110-429 23-379 (389)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 3.4E-38 1.2E-42 328.2 18.4 180 77-275 13-217 (454)
10 2bmo_A Oxygenase-alpha NBDO; n 100.0 1.9E-38 6.4E-43 329.5 16.0 180 78-276 12-217 (447)
11 2b1x_A Naphthalene dioxygenase 100.0 6.1E-38 2.1E-42 327.6 16.3 181 76-275 20-226 (470)
12 3gzx_A Biphenyl dioxygenase su 100.0 1.8E-37 6.2E-42 321.4 11.7 180 77-275 33-244 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 2.4E-36 8.3E-41 314.6 13.3 179 77-274 31-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 2.2E-27 7.5E-32 197.6 12.3 100 118-222 3-103 (103)
15 1fqt_A Rieske-type ferredoxin 99.9 5.6E-27 1.9E-31 198.2 13.4 102 118-224 5-108 (112)
16 2i7f_A Ferredoxin component of 99.9 1.4E-27 4.9E-32 200.5 9.6 102 118-224 3-106 (108)
17 2de6_D Ferredoxin component of 99.9 1.4E-27 4.7E-32 203.0 9.4 104 116-224 2-107 (115)
18 1vm9_A Toluene-4-monooxygenase 99.9 3.7E-27 1.3E-31 198.9 12.0 104 118-226 1-106 (111)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 3.5E-27 1.2E-31 197.4 9.1 101 118-223 1-102 (106)
20 3gce_A Ferredoxin component of 99.9 1.9E-26 6.4E-31 197.7 12.2 102 118-224 10-114 (121)
21 3c0d_A Putative nitrite reduct 99.9 1.8E-26 6.1E-31 197.3 10.1 103 117-224 4-112 (119)
22 2jo6_A Nitrite reductase [NAD( 99.9 3E-26 1E-30 194.0 10.7 100 118-222 6-112 (113)
23 2jza_A Nitrite reductase [NAD( 99.9 6.6E-26 2.2E-30 196.7 13.1 104 118-226 3-113 (130)
24 3d89_A Rieske domain-containin 99.9 5.6E-26 1.9E-30 203.5 6.5 111 115-226 13-138 (157)
25 4aiv_A Probable nitrite reduct 99.9 1.5E-25 5E-30 191.5 8.8 101 117-222 8-116 (119)
26 4aay_B AROB; oxidoreductase, r 99.9 9E-24 3.1E-28 191.7 8.7 144 55-220 3-161 (175)
27 1rie_A Rieske iron-sulfur prot 99.9 3.7E-22 1.3E-26 172.8 11.4 97 118-219 5-128 (129)
28 1rfs_A Rieske protein; iron-su 99.8 5.3E-22 1.8E-26 173.9 6.2 101 117-222 20-124 (139)
29 1g8k_B Arsenite oxidase; molyb 99.8 2E-21 7E-26 169.0 9.6 97 119-220 8-119 (133)
30 3azc_A Cytochrome B6-F complex 99.7 1.5E-21 5.2E-26 169.2 0.0 97 123-224 21-121 (133)
31 3cx5_E Cytochrome B-C1 complex 99.8 2.8E-19 9.7E-24 163.7 11.4 98 117-219 61-184 (185)
32 2nwf_A Ubiquinol-cytochrome C 99.8 5.7E-19 2E-23 154.8 10.5 93 123-219 6-140 (141)
33 2qjy_C Ubiquinol-cytochrome C 99.8 7.2E-19 2.4E-23 161.4 11.5 96 119-219 49-186 (187)
34 1pp9_E Ubiquinol-cytochrome C 99.8 5.2E-19 1.8E-23 163.2 10.6 94 122-219 75-195 (196)
35 1nyk_A Rieske iron-sulfur prot 99.8 1E-18 3.5E-23 157.1 9.5 99 123-226 25-151 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 2.7E-19 9.3E-24 163.3 2.6 92 125-221 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 1.4E-17 4.7E-22 154.6 0.2 85 134-222 56-167 (204)
38 4g2k_A General control protein 58.5 27 0.00092 28.7 6.6 47 3-49 19-72 (125)
39 2yy0_A C-MYC-binding protein; 56.1 17 0.00057 25.6 4.4 30 21-50 21-50 (53)
40 2l5g_A GPS2 protein, G protein 55.4 12 0.0004 24.2 3.1 30 14-43 3-32 (38)
41 3u1c_A Tropomyosin alpha-1 cha 52.7 40 0.0014 26.8 6.8 37 21-57 46-82 (101)
42 3j21_W 50S ribosomal protein L 52.6 32 0.0011 25.7 5.8 46 19-64 9-59 (72)
43 2z5i_A TM, general control pro 52.1 15 0.0005 25.7 3.6 38 19-56 12-49 (52)
44 2jee_A YIIU; FTSZ, septum, coi 52.1 34 0.0012 26.2 5.9 35 3-37 11-45 (81)
45 3twe_A Alpha4H; unknown functi 52.0 21 0.0007 20.7 3.5 21 22-42 4-24 (27)
46 2akf_A Coronin-1A; coiled coil 51.1 30 0.001 21.0 4.3 28 22-49 2-29 (32)
47 3azd_A Short alpha-tropomyosin 49.2 7.3 0.00025 25.3 1.5 26 20-45 5-30 (37)
48 3u59_A Tropomyosin beta chain; 49.2 48 0.0017 26.2 6.8 37 21-57 46-82 (101)
49 3a7o_A Autophagy protein 16; c 46.2 54 0.0019 24.2 5.9 38 21-58 13-53 (75)
50 4emc_A Monopolin complex subun 45.8 46 0.0016 29.5 6.6 51 4-54 19-69 (190)
51 3m91_A Proteasome-associated A 44.2 76 0.0026 22.0 6.2 38 25-62 8-45 (51)
52 2wuj_A Septum site-determining 43.9 13 0.00045 26.4 2.3 33 6-41 24-56 (57)
53 2r2v_A GCN4 leucine zipper; co 42.5 24 0.00081 22.3 3.0 24 3-33 6-29 (34)
54 2rjz_A PILO protein; structura 41.7 38 0.0013 28.7 5.4 43 15-58 11-53 (147)
55 4i0x_B ESAT-6-like protein MAB 40.6 53 0.0018 25.6 5.8 38 21-58 34-81 (103)
56 3mq7_A Bone marrow stromal ant 40.1 40 0.0014 27.5 4.8 42 8-51 55-96 (121)
57 3hnw_A Uncharacterized protein 37.9 90 0.0031 26.2 7.1 42 19-60 89-130 (138)
58 3pp5_A BRK1, protein brick1; t 37.8 30 0.001 26.0 3.5 30 23-52 42-71 (73)
59 2w6b_A RHO guanine nucleotide 37.6 84 0.0029 22.0 5.5 36 21-56 12-50 (56)
60 1kd8_A GABH AIV, GCN4 acid bas 36.2 40 0.0014 21.5 3.3 27 3-36 6-32 (36)
61 1oeg_A Apolipoprotein E; siali 36.1 15 0.00053 21.9 1.3 18 21-38 3-20 (26)
62 1ic2_A Tropomyosin alpha chain 34.5 59 0.002 24.5 4.9 25 21-45 43-67 (81)
63 2zkr_v 60S ribosomal protein L 33.4 82 0.0028 26.0 5.9 48 19-66 12-64 (123)
64 1uix_A RHO-associated kinase; 33.2 1.2E+02 0.0041 22.5 6.1 19 21-39 13-31 (71)
65 3u1c_A Tropomyosin alpha-1 cha 33.2 90 0.0031 24.6 6.0 30 21-50 53-82 (101)
66 3mq9_A Bone marrow stromal ant 31.8 72 0.0024 31.9 6.5 40 21-60 399-449 (471)
67 1vq8_V 50S ribosomal protein L 31.7 1.5E+02 0.005 21.9 6.5 26 19-44 12-37 (71)
68 1r73_A TM1492, 50S ribosomal p 31.3 99 0.0034 22.4 5.5 25 19-43 9-33 (66)
69 4gkw_A Spindle assembly abnorm 31.2 76 0.0026 26.4 5.2 43 18-60 59-104 (167)
70 3u06_A Protein claret segregat 30.9 77 0.0026 31.7 6.4 45 22-67 6-50 (412)
71 4a17_U RPL35, 60S ribosomal pr 30.0 1.3E+02 0.0045 24.8 6.6 27 19-45 13-39 (124)
72 3v2d_2 50S ribosomal protein L 29.8 1.3E+02 0.0044 22.3 6.0 27 19-45 16-42 (72)
73 3viq_B Mating-type switching p 28.4 69 0.0023 24.7 4.2 39 20-58 9-49 (85)
74 3u59_A Tropomyosin beta chain; 28.3 1.2E+02 0.0041 23.7 6.0 30 21-50 53-82 (101)
75 2xdj_A Uncharacterized protein 28.0 1.7E+02 0.0059 22.2 6.5 40 19-58 20-59 (83)
76 3g80_A Protein B2; RNA-binding 27.9 86 0.0029 24.2 4.6 37 5-44 42-78 (97)
77 1s1c_X RHO-associated, coiled- 27.8 1.3E+02 0.0046 22.2 5.6 19 21-39 15-33 (71)
78 4e61_A Protein BIM1; EB1-like 27.4 1.2E+02 0.004 24.4 5.6 37 28-64 6-42 (106)
79 4etp_A Kinesin-like protein KA 27.2 1E+02 0.0034 30.6 6.5 46 21-67 5-50 (403)
80 3iz5_c 60S ribosomal protein L 26.8 1.3E+02 0.0044 24.8 6.0 26 19-44 14-39 (124)
81 2q0o_C Probable transcriptiona 26.7 52 0.0018 26.3 3.3 42 16-59 57-98 (107)
82 3p8c_E Probable protein brick1 25.8 60 0.002 24.4 3.4 29 23-51 42-70 (75)
83 3qfl_A MLA10; coiled-coil, (CC 25.7 72 0.0025 25.6 4.3 45 15-59 15-67 (115)
84 3c3g_A Alpha/beta peptide with 25.7 66 0.0023 20.1 3.0 24 3-33 5-28 (33)
85 2zjr_V 50S ribosomal protein L 25.4 1.3E+02 0.0045 21.8 5.2 25 19-43 9-33 (67)
86 2wq1_A General control protein 25.4 68 0.0023 20.1 3.0 11 3-13 5-15 (33)
87 1ic2_A Tropomyosin alpha chain 25.3 1.6E+02 0.0054 22.1 5.9 12 39-50 54-65 (81)
88 1lwu_C Fibrinogen gamma chain; 24.6 1.4E+02 0.0047 28.8 6.7 41 21-61 7-47 (323)
89 4ani_A Protein GRPE; chaperone 24.5 1.3E+02 0.0046 27.1 6.2 32 21-52 68-99 (213)
90 3sjb_C Golgi to ER traffic pro 23.3 88 0.003 24.5 4.1 33 24-56 54-86 (93)
91 2bni_A General control protein 23.3 65 0.0022 20.3 2.6 24 3-33 6-29 (34)
92 3v1a_A Computational design, M 23.3 50 0.0017 22.7 2.3 23 15-37 23-45 (48)
93 3fpp_A Macrolide-specific effl 23.2 1.2E+02 0.0042 28.5 6.2 42 23-64 66-107 (341)
94 4dk0_A Putative MACA; alpha-ha 23.1 1E+02 0.0034 29.5 5.6 41 23-63 67-107 (369)
95 3nmd_A CGMP dependent protein 22.5 1.9E+02 0.0066 21.5 5.6 33 28-60 21-53 (72)
96 3bbo_Z Ribosomal protein L29; 22.3 49 0.0017 28.9 2.7 50 19-68 73-126 (173)
97 3he5_B Synzip2; heterodimeric 22.3 1.8E+02 0.006 19.3 6.2 38 23-60 7-44 (52)
98 2eqb_B RAB guanine nucleotide 22.2 79 0.0027 25.0 3.6 25 26-50 26-50 (97)
99 1l8d_A DNA double-strand break 21.7 1.4E+02 0.0048 23.4 5.3 34 19-52 3-36 (112)
100 1nkp_B MAX protein, MYC proto- 21.7 1.2E+02 0.0041 22.7 4.6 30 21-50 49-78 (83)
101 3viq_B Mating-type switching p 21.2 1.1E+02 0.0038 23.5 4.2 31 20-50 2-32 (85)
102 3mud_A DNA repair protein XRCC 21.1 97 0.0033 27.1 4.4 39 18-56 134-172 (175)
103 3uul_A Utrophin; spectrin repe 20.9 1.2E+02 0.004 23.5 4.7 50 3-52 54-111 (118)
104 3kin_B Kinesin heavy chain; mo 20.6 61 0.0021 26.4 2.9 27 20-46 83-109 (117)
105 1uo4_A General control protein 20.4 81 0.0028 19.9 2.6 11 3-13 6-16 (34)
106 3mtu_A Tropomyosin alpha-1 cha 20.4 2.7E+02 0.0091 20.6 6.5 46 20-65 3-48 (75)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=2e-53 Score=428.69 Aligned_cols=301 Identities=24% Similarity=0.445 Sum_probs=234.9
Q ss_pred cccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCC
Q 013818 112 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 191 (436)
Q Consensus 112 ~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~ 191 (436)
..++++.|++||+++|| +|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.||+
T Consensus 2 ~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 2 ATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCC
T ss_pred CcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCC
Confidence 45678999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC-cc--ccccccccCCeeeecCeEEEcCCCCC-CC-CCCCCCC--CCCCcEEeEEEEEEeecCchhhhhccCCCC
Q 013818 192 CEKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDLA 264 (436)
Q Consensus 192 ~~~~P~-~~--~~~~~l~~~pv~e~~G~I~v~~~~~~-~~-~~lp~~~--~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~ 264 (436)
|+.+|+ .. ....+|++|||++++|+||||+++++ +. ..+|++. +..++.+. ...++++||||+++||++|+|
T Consensus 81 ~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~ 159 (349)
T 3gke_A 81 CVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDLG 159 (349)
T ss_dssp EEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCGG
T ss_pred ccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhccccc
Confidence 999995 22 13578999999999999999998754 21 1245442 23567655 456789999999999999999
Q ss_pred CCCCCCcccccCCCC--CCceeeeecCCCCC-----------Ccccc------CCC----ccceecCCeeEEEEeeecCC
Q 013818 265 HAPFTHTSTFAKGWS--VPSLVKFLTPASGL-----------QGYWD------PYP----IDMEFRPPCMVLSTIGISKP 321 (436)
Q Consensus 265 H~~~vH~~t~~~~~~--~p~~~~~~~~~~~~-----------~~~~~------~~~----~~~~f~~P~~~~~~~~~~~~ 321 (436)
|++++|+++++.... ++..++. . ..++ ..+|. ... ..++|.+|+++...+++..+
T Consensus 160 H~~~~H~~~~~~~~~~~~~~~v~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~~ 237 (349)
T 3gke_A 160 HAQYVHRANAQTDAFDRLEREVIV-G-DGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAPE 237 (349)
T ss_dssp GHHHHTHHHHCCTTGGGCEEEEEE-C-SSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cchhccchhhcCccccCCCCEEEE-c-CCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEEEecccC
Confidence 999999999987542 1221111 0 0000 01111 001 24678899998777777665
Q ss_pred CCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcchHHHHHHHHHHHHH-hhHHHHHHHHHhhccCCC
Q 013818 322 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLGQQERMNNGA 400 (436)
Q Consensus 322 g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~ED~~ile~qq~~l~~g~ 400 (436)
|.. ...+.++..+++|||+++++|+++|.+++||..++ +.+...+..+..+|| +||+.|||+||+++....
T Consensus 238 g~p-----~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d---~~~~~~~~~~~~~if~~ED~~ile~Qq~~l~~~~ 309 (349)
T 3gke_A 238 GTP-----KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDD---PEMDGVLRSWQAQALVKEDKVVVEAIERRRAYVE 309 (349)
T ss_dssp TSC-----GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTC---HHHHHHHHHHHHHHTTTHHHHHHHHHHHTHHHHH
T ss_pred CCC-----CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCc---hhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhcCC
Confidence 541 12234567789999999999999999999987543 233455667888999 999999999999987632
Q ss_pred --CCCCccccCCHHHHHHHHHHHHHH
Q 013818 401 --NVWNLPVGYDKLGVRYRLWRDALE 424 (436)
Q Consensus 401 --~~~~l~~~aD~~~v~~Rrwl~~l~ 424 (436)
...++++.+|+++++||||++++.
T Consensus 310 ~~~~~~~~~~~D~~~v~~Rr~l~~l~ 335 (349)
T 3gke_A 310 ANGIRPAMLSCDEAAVRVSREIEKLE 335 (349)
T ss_dssp HTTCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHH
Confidence 223589999999999999998774
No 2
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=3.3e-44 Score=367.53 Aligned_cols=311 Identities=18% Similarity=0.173 Sum_probs=226.1
Q ss_pred CccCCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 013818 77 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 155 (436)
Q Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a 155 (436)
..++.+.++|+++|+.|++++|+ +.|++||++++|+ +|++++++++|++++|+|+.||+++|
T Consensus 17 ~~lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A 79 (409)
T 3n0q_A 17 HALDQAFYTDAEVFQTDLQEIFY-----------------KEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRA 79 (409)
T ss_dssp BCCCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred ccCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEe
Confidence 45677788999999999999885 6699999999998 59999999999999999999999999
Q ss_pred EecCCCCCCCCCCC-CcccCCeEeCcCCCceeecCCCccccCCcc----ccccccccCCeeeecCeEEEcCCCCCCCCCC
Q 013818 156 VQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATI 230 (436)
Q Consensus 156 ~~n~CpHrg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~----~~~~~l~~~pv~e~~G~I~v~~~~~~~~~~l 230 (436)
|.|+|||||++|+. |.++++.|+||||||+||.||+|+.+|+.. ....+|++|||++++|+|||++++++| ++
T Consensus 80 ~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~--~l 157 (409)
T 3n0q_A 80 FHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAP--DF 157 (409)
T ss_dssp EESCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CC
T ss_pred ecCcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCC--Ch
Confidence 99999999999996 888889999999999999999999999753 246789999999999999999987654 35
Q ss_pred CCCCC----------CCCcEEeEEEEEEeecCchhhhhccCCCCCCCCCCcccccCCCCC--------------------
Q 013818 231 PCLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV-------------------- 280 (436)
Q Consensus 231 p~~~~----------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~~~~-------------------- 280 (436)
+++++ ...+.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 158 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (409)
T 3n0q_A 158 ERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFD 237 (409)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHH
T ss_pred HHhhhhhhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhh
Confidence 44321 123455556678899999999999999999999999886531100
Q ss_pred -------Cceee------e---ecCC-C-----CCCc---c---ccC---C--CccceecCCeeEEEEeeecCCCCcCCC
Q 013818 281 -------PSLVK------F---LTPA-S-----GLQG---Y---WDP---Y--PIDMEFRPPCMVLSTIGISKPGKLEGQ 327 (436)
Q Consensus 281 -------p~~~~------~---~~~~-~-----~~~~---~---~~~---~--~~~~~f~~P~~~~~~~~~~~~g~~~~~ 327 (436)
+.... + ..+. . ...+ + ... . .....+..||+.+...
T Consensus 238 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~----------- 306 (409)
T 3n0q_A 238 RCEQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL----------- 306 (409)
T ss_dssp HHHHTTCCCCCEECTTSSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC-----------
T ss_pred hhhccCCcceeecccccceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC-----------
Confidence 00000 0 0000 0 0000 0 000 0 0112345677665432
Q ss_pred CcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcchHHHHHHHHHHHHHhhHHHHHHHHHhhccCCCCCC-Ccc
Q 013818 328 NTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVW-NLP 406 (436)
Q Consensus 328 ~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~ED~~ile~qq~~l~~g~~~~-~l~ 406 (436)
.+.+.++.+.|+++++|++.+.++.........--.+ ..+..+.+.|..||..|+|..|+++.++.... .++
T Consensus 307 ------pd~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~~G~~s 379 (409)
T 3n0q_A 307 ------SDHSIVFRVTPISPTETEVTTKWLVHKDAVEGVDYDL-QRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYS 379 (409)
T ss_dssp ------SSCEEEEEEEEEETTEEEEEEEEEEETTCCBTTTBCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCC
T ss_pred ------CCEEEEEEEEECCCCeEEEEEEEEEcCcccccchhhH-HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Confidence 1234567789999999999988775322111000112 23345668899999999999999999865422 233
Q ss_pred ccCCHHHHHHHHHHH-HHH
Q 013818 407 VGYDKLGVRYRLWRD-ALE 424 (436)
Q Consensus 407 ~~aD~~~v~~Rrwl~-~l~ 424 (436)
...+.++..|.+|+. ++.
T Consensus 380 ~~~E~~v~~F~~w~~~~l~ 398 (409)
T 3n0q_A 380 PTQESGVLQFVEWYLSTLK 398 (409)
T ss_dssp TTTSHHHHHHHHHHHHHHH
T ss_pred CCccHhHHHHHHHHHHHHH
Confidence 346899999999955 444
No 3
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.4e-44 Score=363.04 Aligned_cols=300 Identities=16% Similarity=0.281 Sum_probs=211.5
Q ss_pred cccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCC
Q 013818 112 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 191 (436)
Q Consensus 112 ~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~ 191 (436)
+..+.+.|++||++++|++|+++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence 45667899999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ccccCCccc--cccccccCCeeeecCeEEEcCCCCC-CC---CCCCCCCC--CCCcEEeEEEEEEee-cCchhhhhccCC
Q 013818 192 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-IEHGLLLDNLLD 262 (436)
Q Consensus 192 ~~~~P~~~~--~~~~l~~~pv~e~~G~I~v~~~~~~-~~---~~lp~~~~--~~~~~~~~~~~~~~~-~nwk~~~EN~~D 262 (436)
|+.+|+... ...++++|||++++|+||||++++. ++ ..+|++.. ..++.......++++ ||||+++||++|
T Consensus 99 ~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D 178 (386)
T 2zyl_A 99 CKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTD 178 (386)
T ss_dssp EEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGGGGC
T ss_pred ccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhhccc
Confidence 999998642 2468999999999999999997542 21 12343321 234544445567889 999999999999
Q ss_pred CCCCCCCCcccccCC---CCCCceeeee--cCCCCCC--c-cccC--CCccceecCCeeEEEEeeecCCCCcCCCCcccc
Q 013818 263 LAHAPFTHTSTFAKG---WSVPSLVKFL--TPASGLQ--G-YWDP--YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQC 332 (436)
Q Consensus 263 ~~H~~~vH~~t~~~~---~~~p~~~~~~--~~~~~~~--~-~~~~--~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~ 332 (436)
+||++++|+++.... .......... .+..... + .++. ......|..|++++..+....++.
T Consensus 179 ~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~g~--------- 249 (386)
T 2zyl_A 179 MAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRYGNY--------- 249 (386)
T ss_dssp STHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEETTE---------
T ss_pred ccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeeccCCc---------
Confidence 999999999753210 0000000110 0000000 0 0000 011245667887665544333221
Q ss_pred cceeEEEEEeecCCCCceeeeeeeeccchhhcc--CcchHHHHHHHHHHHHHhhHHHHHHHHHhhccCCCCCCCccccCC
Q 013818 333 ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK--HVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYD 410 (436)
Q Consensus 333 ~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~v~~ED~~ile~qq~~l~~g~~~~~l~~~aD 410 (436)
......++.++|+++++|++++.+++++.+... ....+...+..+..+++.||..|++.||+... .++...|
T Consensus 250 ~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~ED~~I~e~q~~~~~------p~~~~~D 323 (386)
T 2zyl_A 250 KSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRVFTEGVSKGFLQDVEIWKHKTRIDN------PLLVEED 323 (386)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS------CCCCGGG
T ss_pred ceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhcccccC------CccCccc
Confidence 112344667799999999999988765532111 11122233445678899999999998765422 2556789
Q ss_pred HHHHHHHHHHHHHHcc
Q 013818 411 KLGVRYRLWRDALEKG 426 (436)
Q Consensus 411 ~~~v~~Rrwl~~l~~g 426 (436)
.++++||+|++++-..
T Consensus 324 ~~~~~fRrw~~~~~~~ 339 (386)
T 2zyl_A 324 GAVYQLRRWYEQFYVD 339 (386)
T ss_dssp CSHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999876443
No 4
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=1.3e-43 Score=368.02 Aligned_cols=308 Identities=17% Similarity=0.264 Sum_probs=214.1
Q ss_pred CChhhhH--hhhcccCcccccccCCCCcccccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCC
Q 013818 85 TSKQSLD--IVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH 162 (436)
Q Consensus 85 ~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpH 162 (436)
+|+++|+ .|++.+|+ +.|++||++++|++|++++++++|++++|+| .+|+++|+.|+|||
T Consensus 25 ~~~~~~~~~~e~~~if~-----------------~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpH 86 (446)
T 1z01_A 25 KTQSQYQPYKDAAWGFI-----------------NHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLH 86 (446)
T ss_dssp HHHGGGHHHHHCTTCBC-----------------SEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTT
T ss_pred cCHHHhhhhhhhhhhhh-----------------hceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCC
Confidence 8999999 88888764 6799999999999899999999999999999 79999999999999
Q ss_pred CCCCCCCCc--ccCCeEeCcCCCceeec-CCCccccCCccc----cccccccCCeeeecCeEEEcCCCCC----CCCCCC
Q 013818 163 RACPLHLGS--VNEGRIQCPYHGWEYST-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIP 231 (436)
Q Consensus 163 rg~~L~~g~--~~~~~l~CpyHgw~f~~-~G~~~~~P~~~~----~~~~l~~~pv~e~~G~I~v~~~~~~----~~~~lp 231 (436)
||++|+.|. ++++.|+||||||+||. +|+|+.+|+.+. ...+|++|||++++|+||||++++. .+++++
T Consensus 87 rga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~ 166 (446)
T 1z01_A 87 RGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLA 166 (446)
T ss_dssp TCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGG
T ss_pred CcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChh
Confidence 999999997 46789999999999997 999999986431 2578999999999999999997642 111222
Q ss_pred CCCC----------------------CCCcEEeEEEEEEeecCchhhhhccCCCCCCCCCCcccccCC---CCCCce---
Q 013818 232 CLLP----------------------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG---WSVPSL--- 283 (436)
Q Consensus 232 ~~~~----------------------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~---~~~p~~--- 283 (436)
+.++ ..++.+. ....+++||||+++||++|+||+ ++|+++++.. ...+..
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~ 244 (446)
T 1z01_A 167 HDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLP 244 (446)
T ss_dssp GGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEE
T ss_pred HhccchhhhhhhccccccccccccccCCCeEEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccc
Confidence 1111 1345443 34568999999999999999999 9999887521 111100
Q ss_pred -----eeeecCCCCCCcc------------cc--------C----CCccceecCCeeEEEEeeecCCCCcCCCCcccccc
Q 013818 284 -----VKFLTPASGLQGY------------WD--------P----YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCAT 334 (436)
Q Consensus 284 -----~~~~~~~~~~~~~------------~~--------~----~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (436)
...+....+..+. +. . ....+.+.+|++++... .|. .
T Consensus 245 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~---~p~-----------~ 310 (446)
T 1z01_A 245 TSDDCIAVVEDDDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVEN---WPE-----------E 310 (446)
T ss_dssp CSTTSEEEECCSSSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEET---CSS-----------T
T ss_pred cCCCceeEEEecCCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEec---cCC-----------C
Confidence 0011000000000 00 0 00122344666553321 110 1
Q ss_pred eeEEEEEeecCCCCceeeeeeeeccchhhccCcchHHHHH----HHH-HHHHHhhHHHHHHHHHhhccCCCC-CCCcccc
Q 013818 335 HLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLW----RHF-AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVG 408 (436)
Q Consensus 335 ~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~----~~~-~~~v~~ED~~ile~qq~~l~~g~~-~~~l~~~ 408 (436)
.+.+++.++|+++++|++++.+++++... .....+...+ ... ...|..||+.|+|+||+++..+.. ..+++..
T Consensus 311 ~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~~~~~~~l~~ 389 (446)
T 1z01_A 311 HVVQYEWYVPITDDTHEYWEILVRVCPTD-EDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDEQLVA 389 (446)
T ss_dssp TCEEEEEEEESSSSEEEEEEEEEEECCSH-HHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHCCCCG
T ss_pred CeEEEEEEEECCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccccccccccCch
Confidence 23456788999999999988777654311 0111011100 011 134679999999999999877543 3457889
Q ss_pred CCHHHHHHHHHHHHHHccC
Q 013818 409 YDKLGVRYRLWRDALEKGA 427 (436)
Q Consensus 409 aD~~~v~~Rrwl~~l~~g~ 427 (436)
+|+++++||||++++..+.
T Consensus 390 ~D~~i~~~Rr~l~~~~~~~ 408 (446)
T 1z01_A 390 TDISPITWRKLASRWNRGI 408 (446)
T ss_dssp GGHHHHHHHHHHHHHCSCB
T ss_pred hhHHHHHHHHHHHHHHhhc
Confidence 9999999999999886554
No 5
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=6.3e-44 Score=365.80 Aligned_cols=309 Identities=17% Similarity=0.161 Sum_probs=224.1
Q ss_pred CccCCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 013818 77 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 155 (436)
Q Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a 155 (436)
..++...++|+++|+.|++++|+ +.|++||++++|+ +|++++++++|++|+|+|+.+|+++|
T Consensus 19 ~~lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A 81 (412)
T 3vca_A 19 FSLEQPFYTSPEVYALDLQHIFY-----------------KQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRA 81 (412)
T ss_dssp BCCCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHHHh-----------------ccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEE
Confidence 34566778999999999999985 5699999999998 59999999999999999999999999
Q ss_pred EecCCCCCCCCCC-CCcccCCeEeCcCCCceeecCCCccccCCcc----ccccccccCCeeeecCeEEEcCCCCCCCCCC
Q 013818 156 VQNTCAHRACPLH-LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATI 230 (436)
Q Consensus 156 ~~n~CpHrg~~L~-~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~----~~~~~l~~~pv~e~~G~I~v~~~~~~~~~~l 230 (436)
+.|+|||||++|+ .|.++++.|+||||||+||.||+|+.+|+.. ....+|++|||++++|+|||++++++| ++
T Consensus 82 ~~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~l 159 (412)
T 3vca_A 82 FHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPP--DF 159 (412)
T ss_dssp EESSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CC
T ss_pred ecccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCC--CH
Confidence 9999999999998 6888889999999999999999999999753 235789999999999999999987654 35
Q ss_pred CCCCC----------CCCcEEeEEEEEEeecCchhhhhccCCCCCCCCCCcccccCCCCC--------------------
Q 013818 231 PCLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV-------------------- 280 (436)
Q Consensus 231 p~~~~----------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~t~~~~~~~-------------------- 280 (436)
+++++ ...+.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 160 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
T 3vca_A 160 QTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHF 239 (412)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHH
T ss_pred HHHhhhhHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhh
Confidence 44332 123445556678899999999999999999999999775521100
Q ss_pred --------Ccee------ee---ecCCC-C-----CCc---c---ccC---C--CccceecCCeeEEEEeeecCCCCcCC
Q 013818 281 --------PSLV------KF---LTPAS-G-----LQG---Y---WDP---Y--PIDMEFRPPCMVLSTIGISKPGKLEG 326 (436)
Q Consensus 281 --------p~~~------~~---~~~~~-~-----~~~---~---~~~---~--~~~~~f~~P~~~~~~~~~~~~g~~~~ 326 (436)
+... .+ ..+.. + ..+ + ... . .....+.+||+.+...
T Consensus 240 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~---------- 309 (412)
T 3vca_A 240 DRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL---------- 309 (412)
T ss_dssp HHHHHTTCCCSCEECTTSSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC----------
T ss_pred hhhhccCCcccccccccCceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC----------
Confidence 0000 00 00000 0 000 0 000 0 0112345677665432
Q ss_pred CCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcchHHHHHHHHHHHHHhhHHHHHHHHHhhccCCCCC-CCc
Q 013818 327 QNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANV-WNL 405 (436)
Q Consensus 327 ~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~ED~~ile~qq~~l~~g~~~-~~l 405 (436)
.+...++.+.|+++++|++.+.++.........-..+ +.+..+.+.+..||..|+|..|+++.++... ..+
T Consensus 310 -------pd~~~~~~~~P~~~~~t~v~~~~~~~~d~~~~~d~~~-~~~~~~~~~~~~ED~~l~e~~Q~G~~S~~y~~G~~ 381 (412)
T 3vca_A 310 -------PDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDL-KRLTEVWIATNDEDREIVETNQQGILSPAYVPGPY 381 (412)
T ss_dssp -------SSCEEEEEEEEEETTEEEEEEEEEEETTCCBTTTBCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBC
T ss_pred -------CCEEEEEEEEECCCCeEEEEEEEEEccccccCccHHH-HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Confidence 1234567789999999999987775321111000112 2334567889999999999999999986532 223
Q ss_pred cccCCHHHHHHHHHHHH
Q 013818 406 PVGYDKLGVRYRLWRDA 422 (436)
Q Consensus 406 ~~~aD~~~v~~Rrwl~~ 422 (436)
+...+.++..|.+|+.+
T Consensus 382 sp~~E~~v~~F~~w~~~ 398 (412)
T 3vca_A 382 SPGQESGVMQFVDWYAA 398 (412)
T ss_dssp CTTTCHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHH
Confidence 33358999999999653
No 6
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=1.6e-43 Score=361.91 Aligned_cols=298 Identities=19% Similarity=0.314 Sum_probs=205.4
Q ss_pred cccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcc--cCCeEeCcCCCceeec-
Q 013818 112 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYST- 188 (436)
Q Consensus 112 ~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~--~~~~l~CpyHgw~f~~- 188 (436)
...+.+.|++||++++|++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|.+ +++.|+||||||+||.
T Consensus 22 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~ 100 (392)
T 2de6_A 22 KLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWE 100 (392)
T ss_dssp TTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETT
T ss_pred hhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCC
Confidence 455788999999999999899999999999999999 599999999999999999999875 4689999999999997
Q ss_pred CCCccccCCccc----cccccccCCeeeecCeEEEcCCCCCCCCCCCCCC----CCCCcEEeEEEEEEeecCchhhhhcc
Q 013818 189 DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLDNL 260 (436)
Q Consensus 189 ~G~~~~~P~~~~----~~~~l~~~pv~e~~G~I~v~~~~~~~~~~lp~~~----~~~~~~~~~~~~~~~~~nwk~~~EN~ 260 (436)
+|+|+.+|+.+. ...+|++|||++++|+|||+++++.++ ++++.+ ...++.+. ....+++||||+++||+
T Consensus 101 ~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~ 178 (392)
T 2de6_A 101 DGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP-PLARDTPPNFLDDDMEIL-GKNQIIKSNWRLAVENG 178 (392)
T ss_dssp TCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSCC-CGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHHHH
T ss_pred CCccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCCC-ChhHhccccccCCCeEEE-EEEEEEecChHhhhHhc
Confidence 999999986432 357899999999999999999764322 233222 12456654 34678999999999999
Q ss_pred CCCCCCCCCCcccccCCCC---CCc---------eeeeecCCCC--CCcc---ccC------------------------
Q 013818 261 LDLAHAPFTHTSTFAKGWS---VPS---------LVKFLTPASG--LQGY---WDP------------------------ 299 (436)
Q Consensus 261 ~D~~H~~~vH~~t~~~~~~---~p~---------~~~~~~~~~~--~~~~---~~~------------------------ 299 (436)
+|+||+ ++|+++++.... .+. .......... ..++ +..
T Consensus 179 ~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~ 257 (392)
T 2de6_A 179 FDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKI 257 (392)
T ss_dssp HCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEETTEEEEECEECSBC
T ss_pred chhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCccccccccccccceeeccccCCcc
Confidence 999999 999988653110 000 0000000000 0000 000
Q ss_pred CCccceecCCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcc-hHHH---HHH
Q 013818 300 YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP-FMQY---LWR 375 (436)
Q Consensus 300 ~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p-~~~~---~~~ 375 (436)
.+....+.+|+..... ..|+ ..+.++..++|+++++|++++.+++++... .... +... .+.
T Consensus 258 ~~~~~~~~~P~~~~~~---~~p~-----------~~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 322 (392)
T 2de6_A 258 VANDISIWLPGVLKVN---PFPN-----------PDMMQFEWYVPIDENTHYYFQTLGKPCAND-EERKKYEQEFESKWK 322 (392)
T ss_dssp CCCEEEEETTTEEEEE---SCSS-----------TTCEEEEEEEEEETTEEEEEEEEEEECSSH-HHHHHHHHHHHHTHH
T ss_pred cceeEEEecccceecc---ccCC-----------CCEEEEEEEeecCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHHH
Confidence 0111223345443211 0111 123456678999999999988777655421 1111 1101 011
Q ss_pred H-HHHHHHhhHHHHHHHHHhhccCCCC-CCCccccCCHHHHHHHHHHHHHHccCC
Q 013818 376 H-FAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAK 428 (436)
Q Consensus 376 ~-~~~~v~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rrwl~~l~~g~~ 428 (436)
. ....|+.||+.|+|+||+.+..+.. ..+++..+|+++++||||++++..+..
T Consensus 323 ~~~~~~~~~qD~~i~e~qq~~~~~~~~~~~e~~~~~D~~~~~~Rr~l~~~~~~~~ 377 (392)
T 2de6_A 323 PMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQ 377 (392)
T ss_dssp HHTTTTTTHHHHHHHHHTHHHHHTSTHHHHCCCCGGGHHHHHHHHHHHHHCSCBC
T ss_pred HhhccCCChhhHHHHHhhhhhhhccccCccceecchhHHHHHHHHHHHHHhhhhc
Confidence 1 1234678999999999998876543 445788999999999999999876654
No 7
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=2.2e-39 Score=326.82 Aligned_cols=302 Identities=20% Similarity=0.323 Sum_probs=211.9
Q ss_pred ccccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCc--ccCCeEeCcCCCceeec
Q 013818 111 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST 188 (436)
Q Consensus 111 ~~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~ 188 (436)
....+++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+||.
T Consensus 27 ~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl 105 (394)
T 3gcf_A 27 ATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDL 105 (394)
T ss_dssp CTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEET
T ss_pred hhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEEC
Confidence 3456778999999999999999999999999999999 79999999999999999999986 46789999999999997
Q ss_pred -CCCccccCCccc----cccccccCCeeeecCeEEEcCCCCCCCCCCCCCCC----CCCcEEeEEEEEEeecCchhhhhc
Q 013818 189 -DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLDN 259 (436)
Q Consensus 189 -~G~~~~~P~~~~----~~~~l~~~pv~e~~G~I~v~~~~~~~~~~lp~~~~----~~~~~~~~~~~~~~~~nwk~~~EN 259 (436)
+|+|+.+|+.+. ...+|++|||++++|+|||+++++++ +++++.++ ..++.+.. ...+++||||+++||
T Consensus 106 ~dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~~-~~~~i~~NWK~~~EN 183 (394)
T 3gcf_A 106 DDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLLG-IRRTVQSNWRLGVEN 183 (394)
T ss_dssp TTCBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHHH
T ss_pred CCCceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEEe-EEEEEecCchhhHhh
Confidence 899999987542 35789999999999999999976432 23443222 24555443 467899999999999
Q ss_pred cCCCCCCCCCCcccccCC---CCCCcee--------eeecCCCCCCccccC-----------------------------
Q 013818 260 LLDLAHAPFTHTSTFAKG---WSVPSLV--------KFLTPASGLQGYWDP----------------------------- 299 (436)
Q Consensus 260 ~~D~~H~~~vH~~t~~~~---~~~p~~~--------~~~~~~~~~~~~~~~----------------------------- 299 (436)
++|+||+ ++|+++++.. ...+..+ ... +.....|.++.
T Consensus 184 ~lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kg~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~ 261 (394)
T 3gcf_A 184 GFDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVY-DENWPKGVLDRLSENYMPVFEATLDGETVLSAELTGEEKK 261 (394)
T ss_dssp HSCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEE-CSSSSCEEEECHHHHEEEECEEEETTEEEEECCCCSSCBC
T ss_pred ccccchh-hCchhhhcccccccccCcceeEcCCceEEec-cCCCCcchhhhhhccccccccccccccccccccccCcccc
Confidence 9999999 9999988641 1111111 011 11122221111
Q ss_pred CCccceecCCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcch---HHHHHHH
Q 013818 300 YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF---MQYLWRH 376 (436)
Q Consensus 300 ~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~---~~~~~~~ 376 (436)
.+....+..|++.... .+.. .+++++-..+|+++++++|+..+...+........+ ++..|..
T Consensus 262 ~~~~~s~~lP~v~~v~-~~p~-------------~~~~~~~~~vPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (394)
T 3gcf_A 262 VAAQVSVWLPGVLKVD-PFPD-------------PTLIQYEFYVPISETQHEYFQVLQRKVEGPEDVKTFEVEFEERWRD 327 (394)
T ss_dssp CCSEEEEETTTEEEEE-SCSS-------------TTCEEEEEEEESSSSCEEEEEEEEEECSSHHHHHHHHHHHHHTHHH
T ss_pred cceeEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEECCCHHHHHHHHHHHHHHhHH
Confidence 0112333445443322 1111 146667777999999999997776544322111111 1112221
Q ss_pred H-HHHHHhhHHHHHHHHHhhccCCCC-CCCccccCCHHHHHHHHHHHHHHccCCCCC
Q 013818 377 F-AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAKQLP 431 (436)
Q Consensus 377 ~-~~~v~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rrwl~~l~~g~~~~p 431 (436)
. ...+.++|+..-|++|+=+..+.. ..+.....|..+|++||...+..+|...-|
T Consensus 328 ~~~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~~r~~~~~~~~~~~~~~ 384 (394)
T 3gcf_A 328 DALHGFNDDDVWAREAQQEFYGERDGWSKEQLFPPDMCIVKWRTLASERGRGVRAAR 384 (394)
T ss_dssp HTTTTTTHHHHHHHHHHHHHHHHSCHHHHCCCCGGGHHHHHHHHHHHHHCSEECC--
T ss_pred HhhcccchhhHHHHHHHHHhhcccCCCChhhccCcchhHHHHHHHHHHhcccCCCCC
Confidence 1 356788999999999987765422 225677899999999999999988876544
No 8
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=5.1e-39 Score=323.32 Aligned_cols=302 Identities=19% Similarity=0.362 Sum_probs=214.2
Q ss_pred cccccccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCc--ccCCeEeCcCCCceee
Q 013818 110 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 187 (436)
Q Consensus 110 ~~~~~~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~ 187 (436)
+....+++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+||
T Consensus 23 E~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 101 (389)
T 3gkq_A 23 DAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYR 101 (389)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEE
T ss_pred hhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEE
Confidence 34456678999999999999999999999999999999 79999999999999999999986 4678999999999999
Q ss_pred c-CCCccccCCccc----cccccccCCeeeecCeEEEcCCCCCCCCCCCCCCC----CCCcEEeEEEEEEeecCchhhhh
Q 013818 188 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD 258 (436)
Q Consensus 188 ~-~G~~~~~P~~~~----~~~~l~~~pv~e~~G~I~v~~~~~~~~~~lp~~~~----~~~~~~~~~~~~~~~~nwk~~~E 258 (436)
. +|+|+.+|+.+. ...+|++|||++++|+|||+++++++ +++++.++ ..++.+.+ ..++++||||+++|
T Consensus 102 l~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~l~~~~~~~~~~~~~-~~~~i~~NWK~~~E 179 (389)
T 3gkq_A 102 WDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP-HDLAEDVPPGFLDADLAVHG-QHRVVDANWRMGVE 179 (389)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred CCCCCeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCC-CCchhhcchhccCCceEEEe-EEEEEecCchhhHH
Confidence 7 899999987542 35789999999999999999976432 23443322 24565544 46789999999999
Q ss_pred ccCCCCCCCCCCcccccCC---CCCCc---------eeeeecCCCCCCccccCC--------------------------
Q 013818 259 NLLDLAHAPFTHTSTFAKG---WSVPS---------LVKFLTPASGLQGYWDPY-------------------------- 300 (436)
Q Consensus 259 N~~D~~H~~~vH~~t~~~~---~~~p~---------~~~~~~~~~~~~~~~~~~-------------------------- 300 (436)
|++|+||+ ++|+++++.. ...+. ............|.++.+
T Consensus 180 N~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (389)
T 3gkq_A 180 NGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAIQGHMGSKM 258 (389)
T ss_dssp HHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEEECBCCSBC
T ss_pred hcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccccCCCCCcc
Confidence 99999999 9999987631 11111 111222222334432211
Q ss_pred -CccceecCCeeEEEEeeecCCCCcCCCCcccccceeEEEEEeecCCCCceeeeeeeeccchhhccCcch---HHHHHHH
Q 013818 301 -PIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF---MQYLWRH 376 (436)
Q Consensus 301 -~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~---~~~~~~~ 376 (436)
.....+..|++.... .+.. .++.++-..+|+++++++|+..+...+........+ ++..|..
T Consensus 259 ~~~~~s~~lP~v~~v~-~~~~-------------~~~~~~~~~vpi~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (389)
T 3gkq_A 259 VAISISVWLPGVLKVD-PFPD-------------PTLTQFEWYVPIDEGHHLYLQMLGRRVGSEEEARSFEAEFREKWVE 324 (389)
T ss_dssp CCCEEEEETTTEEEEE-SCSS-------------TTCEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHHH
T ss_pred cceeEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 112334455544332 1111 246677777999999999997777544322111111 1112221
Q ss_pred H-HHHHHhhHHHHHHHHHhhccCCCC-CCCccccCCHHHHHHHHHHHHHHccCCC
Q 013818 377 F-AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAKQ 429 (436)
Q Consensus 377 ~-~~~v~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rrwl~~l~~g~~~ 429 (436)
. ...+.++|+..-|++|+=+..+.. ..+.....|..+|+.||...+..+|...
T Consensus 325 ~~~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~wr~~~~~~~~~~~~ 379 (389)
T 3gkq_A 325 LALNGFNDDDILARRSMEPFYADDRGWREEVLFESDRAIIEWRRLASQYNRGIQT 379 (389)
T ss_dssp HTTTTTTHHHHHHHHHHHHHHHTSHHHHHCCCCGGGHHHHHHHHHHHHHCSCBCC
T ss_pred HhhccccchhHHHHHHHHHhhccCCCCChhhccCcchhHHHHHHHHHHhccccCC
Confidence 1 356788999999999987765421 2256778999999999999998888654
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=3.4e-38 Score=328.22 Aligned_cols=180 Identities=18% Similarity=0.302 Sum_probs=153.9
Q ss_pred CccCCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 013818 77 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 155 (436)
Q Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a 155 (436)
..++.+.++|+++|+.|++++|. +.|++||++++|+ +|+++++.++|.+|+|+|+.+|+++|
T Consensus 13 ~~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 75 (454)
T 2gbw_A 13 ASQSRQVFWDEDVYALEIERIFS-----------------RAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRA 75 (454)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CccCHHHcCCHHHHHHHHHHHhh-----------------cCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 35677889999999999999885 5699999999998 69999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCcc-cCCeEeCcCCCceeecCCCccccCCccc--------cccccccCCeeeecCeEEEcCCCCCC
Q 013818 156 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 156 ~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P~~~~--------~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
+.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+... ...+|++|+|++++|+|||++++++|
T Consensus 76 ~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p 155 (454)
T 2gbw_A 76 FINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP 155 (454)
T ss_dssp EESSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC
T ss_pred EeccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC
Confidence 99999999999999865 6789999999999999999999997531 24679999999999999999987654
Q ss_pred CCCCCCCCC-------------CCCcEEe-EEEEEEeecCchhhhhcc-CCCCCCCCCCccccc
Q 013818 227 TATIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 275 (436)
Q Consensus 227 ~~~lp~~~~-------------~~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~t~~ 275 (436)
+++++++ +.++.+. ....++++||||+++||+ +|+||++++|..+++
T Consensus 156 --~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 156 --SLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp --CHHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred --CHHHHhhhhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 3554432 1345544 356778999999999999 799999999976654
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=1.9e-38 Score=329.54 Aligned_cols=180 Identities=19% Similarity=0.291 Sum_probs=153.8
Q ss_pred ccC-CCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 013818 78 QTC-ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 155 (436)
Q Consensus 78 ~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a 155 (436)
.++ ...++|+++|+.|++++|. +.|++||++++|+ +|+++++.++|.+|+|+|+.+|+++|
T Consensus 12 ~~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 74 (447)
T 2bmo_A 12 LTQKLLIHGDKELFQHELKTIFA-----------------RNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRA 74 (447)
T ss_dssp CEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CCCccceeCCHHHHHHHHHHhhc-----------------cCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEE
Confidence 456 7789999999999999885 5699999999998 69999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCcc-cCCeEeCcCCCceeecCCCccccCCcc--------ccccccccCC-eeeecCeEEEcCCCCC
Q 013818 156 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEP 225 (436)
Q Consensus 156 ~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P~~~--------~~~~~l~~~p-v~e~~G~I~v~~~~~~ 225 (436)
|.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+.. ....+|++|| |++++|+|||++++++
T Consensus 75 ~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~ 154 (447)
T 2bmo_A 75 FLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEA 154 (447)
T ss_dssp EESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTC
T ss_pred EeccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCC
Confidence 99999999999999875 568999999999999999999999753 2246899999 9999999999998765
Q ss_pred CCCCCCCCCC------------CCCcEEe-EEEEEEeecCchhhhhcc-CCCCCCCCCCcccccC
Q 013818 226 PTATIPCLLP------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK 276 (436)
Q Consensus 226 ~~~~lp~~~~------------~~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~t~~~ 276 (436)
| +++++++ ..++.+. ....++++||||+++||+ +|+||++++|..+++.
T Consensus 155 ~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~ 217 (447)
T 2bmo_A 155 P--PLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA 217 (447)
T ss_dssp C--CHHHHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred C--CHHHHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence 4 3444432 2345554 355778999999999999 7999999999766653
No 11
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=6.1e-38 Score=327.55 Aligned_cols=181 Identities=19% Similarity=0.333 Sum_probs=152.0
Q ss_pred CCccCCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCCC-CCeEEEEEcCeeEEEEEcCCCcEE
Q 013818 76 TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPG 154 (436)
Q Consensus 76 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~~-g~~~~~~~~g~~vvv~R~~dG~~~ 154 (436)
...++.+.++|+++|+.|++++|+ +.|++||++++|++ |++++++++|.+|+|+|+.+|+++
T Consensus 20 ~~~lp~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~ 82 (470)
T 2b1x_A 20 DWTVPAAIINDPEVHDVERERIFG-----------------HAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIR 82 (470)
T ss_dssp TCEEEGGGSSCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEE
T ss_pred CCcCCHHHcCCHHHHHHHHHHHhh-----------------cCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEE
Confidence 345677889999999999999875 56999999999985 889999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCccc-CCeEeCcCCCceeecCCCccccCCccc--------cccccccCC-eeeecCeEEEcCCCC
Q 013818 155 CVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGDE 224 (436)
Q Consensus 155 a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~G~~~~~P~~~~--------~~~~l~~~p-v~e~~G~I~v~~~~~ 224 (436)
||.|+|||||++|+.|.+. ++.|+||||||+||.||+|+.+|+.+. .+.+|..+| |++++|+|||+++++
T Consensus 83 a~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~ 162 (470)
T 2b1x_A 83 GHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPH 162 (470)
T ss_dssp EEESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTT
T ss_pred EEecccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCC
Confidence 9999999999999998754 479999999999999999999998531 246788885 566799999999876
Q ss_pred CCCCCCCCCCC-------------CCCcEEeE-EEEEEeecCchhhhhcc-CCCCCCCCCCccccc
Q 013818 225 PPTATIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 275 (436)
Q Consensus 225 ~~~~~lp~~~~-------------~~~~~~~~-~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~t~~ 275 (436)
+| +++++++ ..++.+.. ...++++||||+++||+ +|+||++++|+++++
T Consensus 163 ~~--~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 163 AD--SLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp CC--CHHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred CC--CHHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 54 3444322 23455543 55678999999999999 999999999998654
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=1.8e-37 Score=321.41 Aligned_cols=180 Identities=18% Similarity=0.274 Sum_probs=155.7
Q ss_pred CccCCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 013818 77 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 155 (436)
Q Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a 155 (436)
..++...++|+++|+.|++++|+ +.|++||++++|+ +|++++++++|++|+|+|+.||+++|
T Consensus 33 ~~~~~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A 95 (457)
T 3gzx_A 33 GKLDARIYADQDLYQLELERVFG-----------------RSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKV 95 (457)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEE
Confidence 45677889999999999999985 6699999999997 69999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCc-ccCCeEeCcCCCceeecCCCccccCCcc--------------ccccccccCCeeeecCeEEEc
Q 013818 156 VQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------------LRNVKIKSLPCFEQEGMIWIW 220 (436)
Q Consensus 156 ~~n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~--------------~~~~~l~~~pv~e~~G~I~v~ 220 (436)
|.|+|||||++|+.|. ++++.|+||||||+||.+|+|+.+|+.+ +...+|++|||.+++|+||||
T Consensus 96 ~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~ 175 (457)
T 3gzx_A 96 FLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFAN 175 (457)
T ss_dssp EESCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEE
T ss_pred EeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEe
Confidence 9999999999999986 6778999999999999999999999853 124678999999999999999
Q ss_pred CCCCCCCCCCCCCCCC-------------CCcEEe-EEEEEEeecCchhhhhcc-CCCCCCC-CCCccccc
Q 013818 221 PGDEPPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFA 275 (436)
Q Consensus 221 ~~~~~~~~~lp~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~-~vH~~t~~ 275 (436)
+++++| ++++++++ .++.+. +...+.++||||+++||+ +|+||++ ++|.++++
T Consensus 176 ~~~~ap--~l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~ 244 (457)
T 3gzx_A 176 WDPEAP--DLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVL 244 (457)
T ss_dssp SCTTSC--CHHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHH
T ss_pred cCCCCC--ChHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhh
Confidence 987654 45555432 245544 256788999999999999 8999999 99997765
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=2.4e-36 Score=314.63 Aligned_cols=179 Identities=19% Similarity=0.291 Sum_probs=151.1
Q ss_pred CccCCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCC-CCCeEEEEEcCeeEEEEEcCCCcEEE
Q 013818 77 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 155 (436)
Q Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~-~g~~~~~~~~g~~vvv~R~~dG~~~a 155 (436)
..++.+.++|+++|+.|++++|. +.|++||++++|+ +|+++++.++|.+|+|+|+.+|+++|
T Consensus 31 ~~~p~~~y~d~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a 93 (460)
T 1uli_A 31 GRLDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRV 93 (460)
T ss_dssp TEECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHhhh-----------------cCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 35677789999999999999875 5699999999998 58899999999999999999999999
Q ss_pred EecCCCCCCCCCCCCcc-cCCeEeCcCCCceeecCCCccccCCcc-------ccccccccCCeeeecCeEEEcCCCCCCC
Q 013818 156 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPT 227 (436)
Q Consensus 156 ~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P~~~-------~~~~~l~~~pv~e~~G~I~v~~~~~~~~ 227 (436)
|.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|+.. ....+|++|+|++++|+|||++++++|
T Consensus 94 ~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p- 172 (460)
T 1uli_A 94 FLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP- 172 (460)
T ss_dssp EESCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC-
T ss_pred EeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC-
Confidence 99999999999999865 567999999999999999999999753 124679999999999999999987654
Q ss_pred CCCCCCCCC-------------CCcEEe-EEEEEEeecCchhhhhcc-CCCCCC-CCCCcccc
Q 013818 228 ATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHA-PFTHTSTF 274 (436)
Q Consensus 228 ~~lp~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~-~~vH~~t~ 274 (436)
++++++++ .++.+. ....++++||||+++||+ +|+||+ .++|..++
T Consensus 173 -~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 173 -DLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp -CHHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred -CHHHHhcchHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 34444321 234432 345678999999999999 799999 69998665
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.95 E-value=2.2e-27 Score=197.57 Aligned_cols=100 Identities=19% Similarity=0.325 Sum_probs=94.6
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec-CCCccccC
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 196 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P 196 (436)
.|++++.++||++|+++.+++.|++++|+| .+|+++|++|+|||+|++|+.|.++++.|+||||||+||. ||+|+.+|
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P 81 (103)
T 2qpz_A 3 KWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAP 81 (103)
T ss_dssp CEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETT
T ss_pred ccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 599999999999999999999999999999 7999999999999999999999988899999999999997 99999999
Q ss_pred CccccccccccCCeeeecCeEEEcCC
Q 013818 197 STQLRNVKIKSLPCFEQEGMIWIWPG 222 (436)
Q Consensus 197 ~~~~~~~~l~~~pv~e~~G~I~v~~~ 222 (436)
+. .+|++|||++++|.|||+++
T Consensus 82 ~~----~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 82 VT----QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp CC----SCCCEECEEEETTEEEEECC
T ss_pred CC----CCCCEEeEEEECCEEEEEcC
Confidence 74 47999999999999999874
No 15
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.94 E-value=5.6e-27 Score=198.18 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=95.7
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCC-cccCCeEeCcCCCceeec-CCCcccc
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEKM 195 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g-~~~~~~l~CpyHgw~f~~-~G~~~~~ 195 (436)
.|++|+.++||++|+++.+++.|++++|+|. +|+++|++|+|||+|++|+.| .++++.|+||||||+||. ||+|+.+
T Consensus 5 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~ 83 (112)
T 1fqt_A 5 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP 83 (112)
T ss_dssp CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred ceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCC
Confidence 5999999999999999999999999999998 999999999999999999999 778899999999999998 8999999
Q ss_pred CCccccccccccCCeeeecCeEEEcCCCC
Q 013818 196 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 224 (436)
Q Consensus 196 P~~~~~~~~l~~~pv~e~~G~I~v~~~~~ 224 (436)
|+. .+|++|||++++|+|||+++++
T Consensus 84 P~~----~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 84 PPC----EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp SCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred CCC----CCccEEEEEEECCEEEEEeccc
Confidence 974 4799999999999999998654
No 16
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.94 E-value=1.4e-27 Score=200.48 Aligned_cols=102 Identities=24% Similarity=0.380 Sum_probs=94.8
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCee-EEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec-CCCcccc
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 195 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~-vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~ 195 (436)
.|++|+.++||++|+++.+++.|++ ++|+|+ +|+++|++|+|||+|++|+.|.++++.|+||||||+||. ||+|+.+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 4999999999999999999999999 999998 999999999999999999999888899999999999995 9999999
Q ss_pred CCccccccccccCCeeeecCeEEEcCCCC
Q 013818 196 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 224 (436)
Q Consensus 196 P~~~~~~~~l~~~pv~e~~G~I~v~~~~~ 224 (436)
|+. .+|++|||++++|+|||+++++
T Consensus 82 P~~----~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ----IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC--
T ss_pred CCC----CCccEEeEEEECCEEEEeCCCC
Confidence 974 4799999999999999998654
No 17
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.94 E-value=1.4e-27 Score=202.98 Aligned_cols=104 Identities=21% Similarity=0.463 Sum_probs=96.1
Q ss_pred cCceEEeeeCCCCCCCCeEEEEEcCe-eEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec-CCCcc
Q 013818 116 KNFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCE 193 (436)
Q Consensus 116 ~~~W~~v~~~~~l~~g~~~~~~~~g~-~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~ 193 (436)
.+.|++|+.++||++|+++.+++.|+ +++|+|+ +|+++|++|+|||+|++|+.|.++++.|+||||||+||. ||+|+
T Consensus 2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~ 80 (115)
T 2de6_D 2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA 80 (115)
T ss_dssp --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence 46799999999999999999999999 9999998 999999999999999999999988899999999999996 99999
Q ss_pred ccCCccccccccccCCeeeecCeEEEcCCCC
Q 013818 194 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 224 (436)
Q Consensus 194 ~~P~~~~~~~~l~~~pv~e~~G~I~v~~~~~ 224 (436)
.+|+. .+|++|||++++|.|||++++.
T Consensus 81 ~~P~~----~~L~~~~v~~~~g~V~v~~~~~ 107 (115)
T 2de6_D 81 SSPCT----VPLGVFEVEVKEGEVYVAGEKK 107 (115)
T ss_dssp ETTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred CCCCc----CCCCEEEEEEECCEEEEecCCc
Confidence 99984 4799999999999999998654
No 18
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.94 E-value=3.7e-27 Score=198.90 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=96.1
Q ss_pred ceEEeeeCCCCCCCCeEEEEE-cCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec-CCCcccc
Q 013818 118 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 195 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~-~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~ 195 (436)
.|+.|+.++||++|+++.+++ .|++++|+|+.+|+++|++|+|||+|++|+.|.++++.|+||||||+||. +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 499999999999999999999 99999999988999999999999999999999988899999999999998 599998
Q ss_pred CCccccccccccCCeeeecCeEEEcCCCCCC
Q 013818 196 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 196 P~~~~~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
|+ ..+|++|||++.+|+|||++++.++
T Consensus 80 p~----~~~L~~~~v~~~~g~v~v~~~~~~~ 106 (111)
T 1vm9_A 80 PD----DAALAEYPVEVKGDDIYVSTKGILP 106 (111)
T ss_dssp SS----SCBCCEECEEEETTEEEECCTTCCC
T ss_pred CC----cCCcCEEEEEEECCEEEEeccCcCC
Confidence 75 3589999999999999999976543
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.94 E-value=3.5e-27 Score=197.41 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=95.1
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceee-cCCCccccC
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 196 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~-~~G~~~~~P 196 (436)
.|+.|+.++||++|+++.+.+.|.+++|+| .+|+++|++|+|||+|++|+.|.++++.|+||||||+|| .||+|+.+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 499999999999999999999999999999 699999999999999999999998889999999999999 599999999
Q ss_pred CccccccccccCCeeeecCeEEEcCCC
Q 013818 197 STQLRNVKIKSLPCFEQEGMIWIWPGD 223 (436)
Q Consensus 197 ~~~~~~~~l~~~pv~e~~G~I~v~~~~ 223 (436)
+. .+|++||+++.+|.|||++++
T Consensus 80 ~~----~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 80 AC----KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp CC----SCCCEECEEEETTEEEECGGG
T ss_pred CC----CCccEEEEEEECCEEEEEccc
Confidence 84 489999999999999999854
No 20
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.94 E-value=1.9e-26 Score=197.71 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=94.8
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCC--cccCCeEeCcCCCceee-cCCCccc
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEK 194 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g--~~~~~~l~CpyHgw~f~-~~G~~~~ 194 (436)
.|++|+.++||++|+++.+++.|++++|+|. +|+++|++|+|||+|++|+.| .++++.|+||||||+|| .+|+|+.
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~ 88 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTA 88 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeC
Confidence 5999999999999999999999999999996 999999999999999999999 88889999999999999 5999999
Q ss_pred cCCccccccccccCCeeeecCeEEEcCCCC
Q 013818 195 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 224 (436)
Q Consensus 195 ~P~~~~~~~~l~~~pv~e~~G~I~v~~~~~ 224 (436)
+|+. .+|++|||++++|.|||+++..
T Consensus 89 ~P~~----~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 89 LPCV----LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp TTCC----SCCCBCCEEEETTEEEECCC--
T ss_pred CCCc----CCcceEEEEEECCEEEEEECcc
Confidence 9984 4899999999999999998654
No 21
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.93 E-value=1.8e-26 Score=197.27 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=95.0
Q ss_pred CceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCC-CCCCCcccCC----eEeCcCCCceeec-CC
Q 013818 117 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG 190 (436)
Q Consensus 117 ~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~-~L~~g~~~~~----~l~CpyHgw~f~~-~G 190 (436)
..|++|+.++||++|+++.+.+.|.+++|+|+.+|+++|++|+|||+|+ +|+.|.+++. .|+||||||+||. ||
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 4699999999999999999999999999999989999999999999999 8999987532 8999999999997 99
Q ss_pred CccccCCccccccccccCCeeeecCeEEEcCCCC
Q 013818 191 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 224 (436)
Q Consensus 191 ~~~~~P~~~~~~~~l~~~pv~e~~G~I~v~~~~~ 224 (436)
+|+.+|+ .+|++|||++.+|.|||++++.
T Consensus 84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence 9999997 4799999999999999998653
No 22
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.93 E-value=3e-26 Score=193.97 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=92.5
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCC-cEEEEecCCCCCCC-CCCCCccc---CC-eEeCcCCCceeec-CC
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---EG-RIQCPYHGWEYST-DG 190 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG-~~~a~~n~CpHrg~-~L~~g~~~---~~-~l~CpyHgw~f~~-~G 190 (436)
.|+.|+.++||++|+++.+++.|.+++|+|+.+| +++|++|+|||+|+ +|+.|.+. +. .|+||||||+||. ||
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG 85 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG 85 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence 4999999999999999999999999999998899 69999999999999 79999875 23 8999999999997 99
Q ss_pred CccccCCccccccccccCCeeeecCeEEEcCC
Q 013818 191 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 222 (436)
Q Consensus 191 ~~~~~P~~~~~~~~l~~~pv~e~~G~I~v~~~ 222 (436)
+|+.+|+ .+|++|||++.+|+|||+++
T Consensus 86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence 9999997 47999999999999999874
No 23
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.93 E-value=6.6e-26 Score=196.72 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=94.7
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCC-cEEEEecCCCCCCC-CCCCCccc---C-CeEeCcCCCceeec-CC
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG 190 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG-~~~a~~n~CpHrg~-~L~~g~~~---~-~~l~CpyHgw~f~~-~G 190 (436)
.|+.||.++||++|+++.+++.|++++|+|+.+| +++|++|+|||+|+ +|+.|.+. + ..|+||||||+||. ||
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 82 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG 82 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998788 99999999999999 59999864 2 38999999999997 99
Q ss_pred CccccCCccccccccccCCeeeecCeEEEcCCCCCC
Q 013818 191 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 191 ~~~~~P~~~~~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
+|+.+|+ .+|++|||++++|+|||+++++++
T Consensus 83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~~ 113 (130)
T 2jza_A 83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSDV 113 (130)
T ss_dssp CBSSCCS-----SCCBCCCEEESSSEEEEECCCCCC
T ss_pred CCCCCCc-----CcceEEEEEEECCEEEEEeCCCCC
Confidence 9999997 479999999999999999976543
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.92 E-value=5.6e-26 Score=203.45 Aligned_cols=111 Identities=23% Similarity=0.372 Sum_probs=95.7
Q ss_pred ccCceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccC----CeEeCcCCCceeec-C
Q 013818 115 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-D 189 (436)
Q Consensus 115 ~~~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~----~~l~CpyHgw~f~~-~ 189 (436)
..+.|++||.++||++|+++.+++.|++|+|+| .+|+++|+.|+|||||++|+.|.+.+ +.|+||||||+||. |
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 457899999999998899999999999999999 69999999999999999999998753 68999999999997 9
Q ss_pred CCccc--c-CCccc-------cccccccCCeeeecCeEEEcCCCCCC
Q 013818 190 GKCEK--M-PSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 190 G~~~~--~-P~~~~-------~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
|+|+. + |.... ...+|++|||++++|+|||+++++++
T Consensus 92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~~ 138 (157)
T 3d89_A 92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEPF 138 (157)
T ss_dssp CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCSS
T ss_pred cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCCc
Confidence 99986 3 64211 13679999999999999999987543
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.92 E-value=1.5e-25 Score=191.47 Aligned_cols=101 Identities=19% Similarity=0.213 Sum_probs=88.4
Q ss_pred CceEEeeeCCCCCCCCeEEEEEc-CeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccC-----CeEeCcCCCceee-cC
Q 013818 117 NFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-----GRIQCPYHGWEYS-TD 189 (436)
Q Consensus 117 ~~W~~v~~~~~l~~g~~~~~~~~-g~~vvv~R~~dG~~~a~~n~CpHrg~~L~~g~~~~-----~~l~CpyHgw~f~-~~ 189 (436)
+.|++||.++||++|..+.+.+. |++|+|||..||+++|++|+|||+|++|+.|.+.+ ..|+||||||+|| .|
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t 87 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD 87 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence 46999999999999988888885 79999999999999999999999999998765432 3699999999999 59
Q ss_pred CCccccCCccccccccccCCee-eecCeEEEcCC
Q 013818 190 GKCEKMPSTQLRNVKIKSLPCF-EQEGMIWIWPG 222 (436)
Q Consensus 190 G~~~~~P~~~~~~~~l~~~pv~-e~~G~I~v~~~ 222 (436)
|+|+..|.. ++++|||+ |.+|.|||...
T Consensus 88 G~~~~~p~~-----~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 88 GSCLDDPRV-----SVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp CBBSSCTTC-----BCCEECEEECTTSEEEEEEE
T ss_pred CcCcCCCCC-----ccceEEEEEEeCCEEEEecC
Confidence 999999864 69999997 56899999763
No 26
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.89 E-value=9e-24 Score=191.72 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=87.9
Q ss_pred hHHHHHHhhhhhhhcccCCCCCCcc-CCCCCCChhhhHhhhcccCcccccccCCCCcccccccCceEEeeeCCCCCCCCe
Q 013818 55 KLAYMEALVNDRLLQDRHTSGTDQT-CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM 133 (436)
Q Consensus 55 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~~l~~g~~ 133 (436)
+-..|.++.||.||+++.++.++.+ ++-+.... +.+.. .. ....+ -.+..||.++||++|++
T Consensus 3 ~~~~~~~~~rr~fl~~~~~a~~~~~~~~~~~~~~------~~~~~-----~~---~~~~~---~p~~~v~~~~dL~~g~~ 65 (175)
T 4aay_B 3 RCQNMVDIGRRQFLRGGALAAAGATAAVFGVGAP------QARAA-----TA---AAGVE---YPANRLANISELTLNEP 65 (175)
T ss_dssp -------------------------------------------------------CCSCC---CCCEEEEEGGGCBBTBC
T ss_pred cchhhccccHHHHhhhhHHhhhheeEeccccccc------ccccc-----cc---CcccC---CCcceEEEHHHCCCCCE
Confidence 4467889999999997766555322 11111100 00000 00 01111 12458999999999999
Q ss_pred EEEEEcC--eeEEEEEc---------CCCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeec--CCCccccCCccc
Q 013818 134 VPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMPSTQL 200 (436)
Q Consensus 134 ~~~~~~g--~~vvv~R~---------~dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~--~G~~~~~P~~~~ 200 (436)
+.+++.| .+++|+|. .+|+++|++|+|||+|++|++| .+++.|+||||||+||. +|+|+.+|+.
T Consensus 66 ~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~-- 142 (175)
T 4aay_B 66 LDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQAT-- 142 (175)
T ss_dssp EEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCS--
T ss_pred EEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCC--
Confidence 9999874 58999997 5999999999999999999998 57789999999999996 5999999984
Q ss_pred cccccccCCeee-ecCeEEEc
Q 013818 201 RNVKIKSLPCFE-QEGMIWIW 220 (436)
Q Consensus 201 ~~~~l~~~pv~e-~~G~I~v~ 220 (436)
..|+.||+++ .+|.||+-
T Consensus 143 --~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 143 --QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp --SCCCBEEEEECTTSEEEEE
T ss_pred --CCcCEEEEEEEcCCEEEEE
Confidence 4799999998 68999963
No 27
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.87 E-value=3.7e-22 Score=172.80 Aligned_cols=97 Identities=16% Similarity=0.284 Sum_probs=88.9
Q ss_pred ceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcC--------------------------CCcEEEEecCCCCCCCCCCCCc
Q 013818 118 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGS 171 (436)
Q Consensus 118 ~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~--------------------------dG~~~a~~n~CpHrg~~L~~g~ 171 (436)
.|+.+ ..++|++|+.+.+.+.|++++|+|.. +|+++|++|+|||+|++|+.|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 46666 88999999999999999999999963 8999999999999999999998
Q ss_pred ccCCeEeCcCCCceeecCCCccccCCccccccccccCCeee-ecCeEEE
Q 013818 172 VNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 219 (436)
Q Consensus 172 ~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~pv~e-~~G~I~v 219 (436)
++++.|.||||||+||.+|+|+.+|+. ..|+.||+++ .+|.|||
T Consensus 84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~----~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDFGGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTTEEEEETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEEE
T ss_pred CCCCEEEcCCCCCEEcCCCCEeeCCCC----CCCCceeEEEEeCCEEEE
Confidence 888899999999999999999999984 4799999998 8999987
No 28
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.85 E-value=5.3e-22 Score=173.92 Aligned_cols=101 Identities=17% Similarity=0.274 Sum_probs=88.4
Q ss_pred CceEEeee-CCCCCCCCeEEEE-EcCeeEEEEEcCCCcE--EEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCCc
Q 013818 117 NFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKC 192 (436)
Q Consensus 117 ~~W~~v~~-~~~l~~g~~~~~~-~~g~~vvv~R~~dG~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~ 192 (436)
..|+.++. .+||++|..+.+. +.|.+++++|+.+|++ +|++|+|||+|++|++|. .++.|+||||||+||.||+|
T Consensus 20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~ 98 (139)
T 1rfs_A 20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGRV 98 (139)
T ss_dssp SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCCE
T ss_pred CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCCC
Confidence 45778877 8999987766655 5788888888899999 999999999999999887 46899999999999999999
Q ss_pred cccCCccccccccccCCeeeecCeEEEcCC
Q 013818 193 EKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 222 (436)
Q Consensus 193 ~~~P~~~~~~~~l~~~pv~e~~G~I~v~~~ 222 (436)
+.+|+. ..|+.|||++.+|.|||.+.
T Consensus 99 ~~~P~~----~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 99 VRGPAP----LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred ccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence 999974 47999999999999999863
No 29
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.85 E-value=2e-21 Score=169.00 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=87.6
Q ss_pred eEEeeeCCCCCCCCeEEEEEc--CeeEEEEEcC---------CCcEEEEecCCCCCCCCCCCCcccCCeEeCcCCCceee
Q 013818 119 WFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 187 (436)
Q Consensus 119 W~~v~~~~~l~~g~~~~~~~~--g~~vvv~R~~---------dG~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~ 187 (436)
|+.+|.++||++|+++.+.+. |.+++|+|.. +|+++|++|+|||+|++|+++ .+++.|+||||||+||
T Consensus 8 ~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~Fd 86 (133)
T 1g8k_B 8 ATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEFD 86 (133)
T ss_dssp CEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEE
T ss_pred ceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEEC
Confidence 889999999999999999985 8999999975 999999999999999999984 4668999999999999
Q ss_pred c--CCCccccCCccccccccccCCeeee--cCeEEEc
Q 013818 188 T--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 220 (436)
Q Consensus 188 ~--~G~~~~~P~~~~~~~~l~~~pv~e~--~G~I~v~ 220 (436)
. +|+|+.+|+. ..|+.|++++. +|.|||.
T Consensus 87 ~~~~G~~~~gP~~----~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 87 AEKAGQMICGEAT----ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp GGGTTEEEESSCS----SCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCEEcCCCC----CCCCEEEEEEECCCCEEEEE
Confidence 7 8999999974 37999999988 6789984
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.70 E-value=1.5e-21 Score=169.25 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=82.0
Q ss_pred eeCCCCCCCCeEEEE-EcCeeEEEEEcCCCc--EEEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCCccccCCcc
Q 013818 123 AFSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 199 (436)
Q Consensus 123 ~~~~~l~~g~~~~~~-~~g~~vvv~R~~dG~--~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~ 199 (436)
...+++++|+...+. +.|.+.+++|..+|+ ++|++|+|||+|++|+.|. .++.|+||||||+||.+|+|+.+|+.
T Consensus 21 ~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~- 98 (133)
T 3azc_A 21 EYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP- 98 (133)
Confidence 456778888776666 345566666667999 9999999999999999987 56899999999999999999999974
Q ss_pred ccccccccCCeee-ecCeEEEcCCCC
Q 013818 200 LRNVKIKSLPCFE-QEGMIWIWPGDE 224 (436)
Q Consensus 200 ~~~~~l~~~pv~e-~~G~I~v~~~~~ 224 (436)
.+|++|||++ .+|.|||.++.+
T Consensus 99 ---~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 99 ---LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 3799999999 999999987643
No 31
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.79 E-value=2.8e-19 Score=163.74 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=85.5
Q ss_pred CceEEeeeCCCCCCCCeEEEEEcCeeEEEEEcC--------------------------CCcEEEEecCCCCCCCCCCCC
Q 013818 117 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLG 170 (436)
Q Consensus 117 ~~W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~~--------------------------dG~~~a~~n~CpHrg~~L~~g 170 (436)
..|+.| .+++|++|+.+++.+.|++++|+|.. +|+++|+.|+|||+||.+..+
T Consensus 61 ~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~ 139 (185)
T 3cx5_E 61 MAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGE 139 (185)
T ss_dssp CCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEE
T ss_pred cCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccC
Confidence 469999 69999999999999999999999974 699999999999999965443
Q ss_pred cccCCeEeCcCCCceeecCCCccccCCccccccccccCCeeeecCeEEE
Q 013818 171 SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 219 (436)
Q Consensus 171 ~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~pv~e~~G~I~v 219 (436)
.++.+.|.||||||+||.+|+|+.+|+. ..|..+|+...+|.|||
T Consensus 140 ~~~~~~~~CPcHGs~FD~~G~v~~gPa~----~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 140 AGDFGGWFCPCHGSHYDISGRIRKGPAP----LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp ETTTTEEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTEEEE
T ss_pred CCCCCEEEcCCCCCEECCCCCEecCCCC----CCcceEEEEEECCEEEE
Confidence 3456899999999999999999999974 46888888888999987
No 32
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.78 E-value=5.7e-19 Score=154.77 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=83.8
Q ss_pred eeCCCCCCCCeEEEEEcCeeEEEEEcC----------------------------------------CCcEEEEecCCCC
Q 013818 123 AFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------------DGIPGCVQNTCAH 162 (436)
Q Consensus 123 ~~~~~l~~g~~~~~~~~g~~vvv~R~~----------------------------------------dG~~~a~~n~CpH 162 (436)
..+++|++|+.+++...|+||+|.|.. +|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 467899999999999999999998841 7999999999999
Q ss_pred CCCCCCC-CcccCCeEeCcCCCceeecCCCccccCCccccccccccCCeee-ecCeEEE
Q 013818 163 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 219 (436)
Q Consensus 163 rg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~pv~e-~~G~I~v 219 (436)
+||+|++ +.++++.|.||||||+||.+|+|+.+|+. ..|..||++. .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC----CCCCceeEEEEECCEEEE
Confidence 9999998 77667899999999999999999999984 4799999998 7899987
No 33
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.78 E-value=7.2e-19 Score=161.39 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=84.3
Q ss_pred eEEeeeCCCCCCCCeEEEEEcCeeEEEEEc----------------------------------------CCCcEEEEec
Q 013818 119 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQN 158 (436)
Q Consensus 119 W~~v~~~~~l~~g~~~~~~~~g~~vvv~R~----------------------------------------~dG~~~a~~n 158 (436)
|+.+ ..++|++|+.+.+.+.|++|+|+|. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 5555 8899999999999999999999992 2899999999
Q ss_pred CCCCCCCCCCC-CcccCCeEeCcCCCceeecCCCccccCCccccccccccCCeeee-cCeEEE
Q 013818 159 TCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 219 (436)
Q Consensus 159 ~CpHrg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~pv~e~-~G~I~v 219 (436)
+|||+||+|++ +.++.+.|.||||||+||.+|+|+.+|+. ..|+.||++.. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~----~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC----CCCceEEEEEEeCCEEEE
Confidence 99999999998 34445899999999999999999999984 47999999875 689987
No 34
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.78 E-value=5.2e-19 Score=163.21 Aligned_cols=94 Identities=17% Similarity=0.293 Sum_probs=86.2
Q ss_pred eeeCCCCCCCCeEEEEEcCeeEEEEEcC--------------------------CCcEEEEecCCCCCCCCCCCCcccCC
Q 013818 122 VAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 175 (436)
Q Consensus 122 v~~~~~l~~g~~~~~~~~g~~vvv~R~~--------------------------dG~~~a~~n~CpHrg~~L~~g~~~~~ 175 (436)
.+..++|++|+.+.+.+.|++++|+|.. +|+++|+.|+|||+||+|+.|.++.+
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~ 154 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFG 154 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTS
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCC
Confidence 4788999999999999999999999862 89999999999999999999987778
Q ss_pred eEeCcCCCceeecCCCccccCCccccccccccCCeee-ecCeEEE
Q 013818 176 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 219 (436)
Q Consensus 176 ~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~pv~e-~~G~I~v 219 (436)
.|.||||||+||.+|+++.+|+. ..|..||++. .+|.|+|
T Consensus 155 ~~~CP~HGs~FD~~G~v~~gPa~----~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 155 GYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTTEEEE
T ss_pred EEEeCCCCCEECCCCCCccCCCC----CCCcceeEEEEECCEEEE
Confidence 99999999999999999999984 4799999998 7899987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.76 E-value=1e-18 Score=157.14 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=82.0
Q ss_pred eeCCCCCCCCeEEEEEcCee-------------EEEEEc-------------CCCcEEEEecCCCCCCCCCCCCcccCCe
Q 013818 123 AFSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGR 176 (436)
Q Consensus 123 ~~~~~l~~g~~~~~~~~g~~-------------vvv~R~-------------~dG~~~a~~n~CpHrg~~L~~g~~~~~~ 176 (436)
...++|++|+.+.+..-|.+ +++.|- .+| ++||+|+|||+||+|+.|.++++.
T Consensus 25 v~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~ 103 (165)
T 1nyk_A 25 IRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEA 103 (165)
T ss_dssp CBGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTE
T ss_pred ecHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCE
Confidence 36788888888788765544 455564 355 999999999999999988888889
Q ss_pred EeCcCCCceeec-CCC-ccccCCccccccccccCCeeeecCeEEEcCCCCCC
Q 013818 177 IQCPYHGWEYST-DGK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 226 (436)
Q Consensus 177 l~CpyHgw~f~~-~G~-~~~~P~~~~~~~~l~~~pv~e~~G~I~v~~~~~~~ 226 (436)
|.||||||+||. +|. |+.+|+. ..|..||+++.+|.|||+++...+
T Consensus 104 i~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~ 151 (165)
T 1nyk_A 104 ALCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP 151 (165)
T ss_dssp EECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred EECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence 999999999997 486 9999974 479999999999999999876544
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.74 E-value=2.7e-19 Score=163.29 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=82.1
Q ss_pred CCCCCCCCeEEEE-EcCeeEEEEEcCCCcE--EEEecCCCCCCCCCCCCcccCCeEeCcCCCceeecCCCccccCCcccc
Q 013818 125 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 201 (436)
Q Consensus 125 ~~~l~~g~~~~~~-~~g~~vvv~R~~dG~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~ 201 (436)
.+++++|+...+. +.|++++++|+.+|++ +|++|+|||+||+|+++. .++.|.||||||+||.+|+|+.+|+.
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~--- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP--- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence 4678888877776 6789999999999998 999999999999999987 45899999999999999999999974
Q ss_pred ccccccCCeeeecCeEEEcC
Q 013818 202 NVKIKSLPCFEQEGMIWIWP 221 (436)
Q Consensus 202 ~~~l~~~pv~e~~G~I~v~~ 221 (436)
..|+.||+++.+|.|||.+
T Consensus 146 -~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -SCCBCCCCCCSSSSCCCCC
T ss_pred -CCCCeEEEEEECCEEEEEe
Confidence 4799999999999999965
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.64 E-value=1.4e-17 Score=154.63 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=71.9
Q ss_pred EEEEEcCeeEEEEEcC------------CCcEEEEecCCCCCCCCCCCCcc-----------cCCeEeCcCCCceeecC-
Q 013818 134 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGSV-----------NEGRIQCPYHGWEYSTD- 189 (436)
Q Consensus 134 ~~~~~~g~~vvv~R~~------------dG~~~a~~n~CpHrg~~L~~g~~-----------~~~~l~CpyHgw~f~~~- 189 (436)
+.+++.+..++++|+. +|+++|+.|+|||+||+|+.|.+ .++.|.||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 4567788888888876 89999999999999999998843 56899999999999986
Q ss_pred -CCccccCCccccccccccCCeeee--cCeEEEcCC
Q 013818 190 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWPG 222 (436)
Q Consensus 190 -G~~~~~P~~~~~~~~l~~~pv~e~--~G~I~v~~~ 222 (436)
|+|+.+|+. ..|+.|++... +|.|||...
T Consensus 136 GG~v~~gPa~----~~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 136 GGVVVSGPAP----RPLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp TSEEEESSCC----SCCCBEEEEECTTTCEEEEEEE
T ss_pred CCeEecCCCC----CCCCeEeeEEEecCCEEEEEeC
Confidence 699999974 36888888866 899999753
No 38
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=58.54 E-value=27 Score=28.67 Aligned_cols=47 Identities=26% Similarity=0.339 Sum_probs=31.9
Q ss_pred hhhHHHHhh-------ChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013818 3 LHEKVVEVL-------NPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARV 49 (436)
Q Consensus 3 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (436)
+-|||+|.| |+.||=.|-||.|...|.-+-.+-++|=.-+......+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~L~~q~Tsl 72 (125)
T 4g2k_A 19 IEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLELLLRVTTEE 72 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899988 56788888888888887777666555554444433333
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.09 E-value=17 Score=25.56 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
+..||.|+++||.++..-..+..-..+++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888877777766666553
No 40
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=55.39 E-value=12 Score=24.22 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=22.7
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHhh
Q 013818 14 LARDYKSIGTMKKELAELQEDLAQAHRQVH 43 (436)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (436)
+..|.++++..|+|+..|+.+|+.-.+.-|
T Consensus 3 e~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 3 EMEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888888888877666555
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=52.74 E-value=40 Score=26.76 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 57 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (436)
|..|.+.+..|+++|-++..++..+...+...-.+++
T Consensus 46 i~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 46 IVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666555555554444444
No 42
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.56 E-value=32 Score=25.67 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=30.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHhhHHHHHHhhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVN 64 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 64 (436)
+|...|.++|.+|..||.+-.-|-...+ +++...-..++.+..+.+
T Consensus 9 ~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~ 59 (72)
T 3j21_W 9 MSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKK 59 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999988777766554 333343344444444444
No 43
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=52.09 E-value=15 Score=25.72 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=30.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhH
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 56 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (436)
.||..|.|++..|.++|..+..+--.....+.+++.-+
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el 49 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999998887777666777765443
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.06 E-value=34 Score=26.15 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=22.6
Q ss_pred hhhHHHHhhChhhhhccchhhHHHHHHHHHHHHHH
Q 013818 3 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQ 37 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (436)
|..||-..+..++-=++=|..||.+-..|.+|...
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777666566667777776665554444
No 45
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=51.99 E-value=21 Score=20.69 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 013818 22 GTMKKELAELQEDLAQAHRQV 42 (436)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ 42 (436)
..|-|||..|||.|.|-...+
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357789999999988876654
No 46
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=51.07 E-value=30 Score=21.04 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013818 22 GTMKKELAELQEDLAQAHRQVHISEARV 49 (436)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (436)
..|.+++-.||.-+++-+.++-..|-.|
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888877777777766665554
No 47
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=49.22 E-value=7.3 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=19.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhh
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHIS 45 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (436)
++..||+.+..||.|+.+|..++-..
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899988888888777766443
No 48
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.18 E-value=48 Score=26.15 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 57 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (436)
|..|++.+..|++++-++..++..+...+...-.++.
T Consensus 46 i~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777666665555544444
No 49
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=46.15 E-value=54 Score=24.25 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHhhHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVA---TALDKLAY 58 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 58 (436)
-.+|+..|+.||++|-.-..+++..+.++. .+..||.+
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLND 53 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLND 53 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhH
Confidence 345666677777777666666666666654 44445544
No 50
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=45.76 E-value=46 Score=29.55 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=32.8
Q ss_pred hhHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 013818 4 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALD 54 (436)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (436)
|.-|..+.++..+=..-+.+...|+..||++++.+.+|...++.+.+..+.
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e 69 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAE 69 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 344445555544444446677777888888888888888777766665433
No 51
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=44.15 E-value=76 Score=22.00 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHh
Q 013818 25 KKELAELQEDLAQAHRQVHISEARVATALDKLAYMEAL 62 (436)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (436)
+.++.+||.++.....|-+.....+..+-+++..|.+-
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888887777777777777776543
No 52
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=43.85 E-value=13 Score=26.39 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=20.6
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 013818 6 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQ 41 (436)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (436)
.|-+.|..++.++ .+|.+|..+|++++.+...+
T Consensus 24 EVD~FLd~v~~~~---~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDY---EIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 4666677777664 46778888888887776654
No 53
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=42.48 E-value=24 Score=22.31 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=13.3
Q ss_pred hhhHHHHhhChhhhhccchhhHHHHHHHHHH
Q 013818 3 LHEKVVEVLNPLARDYKSIGTMKKELAELQE 33 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (436)
+-+||+|+++.. .+|..|++.|++
T Consensus 6 ledKvEel~~~~-------~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKL-------YHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------HHHHHHHHHHHH
Confidence 346777776642 345555555544
No 54
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=41.72 E-value=38 Score=28.70 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=35.0
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 15 ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
++.-.....||+|+++|++++.+...|+- +++.+..-|..+++
T Consensus 11 ~~~aa~L~~l~~ql~~l~~~l~~l~~~LP-~~~em~~LL~~i~~ 53 (147)
T 2rjz_A 11 AFQAANLEAYKAQMKEMEESFGALLRQLP-SDTEVPGLLEDITR 53 (147)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHHHTTT-GGGHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHH
Confidence 34455678999999999999999999886 77888888776666
No 55
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=40.64 E-value=53 Score=25.62 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHH----------HHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 21 IGTMKKELAELQED----------LAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 21 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
+..|+.+++.|+.. +..++.+++.+...+...|..++.
T Consensus 34 l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~ 81 (103)
T 4i0x_B 34 LDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEE 81 (103)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766 778888888888888888777666
No 56
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.09 E-value=40 Score=27.51 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=27.9
Q ss_pred HHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013818 8 VEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 51 (436)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (436)
|+-|+.---+.||.+ .+++.+||+|+..-.++++-..+-|+.
T Consensus 55 V~tL~~SL~~ekaq~--q~~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 55 VMALMASLDAEKAQG--QKKVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444334445566 667888999988888888877665553
No 57
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.93 E-value=90 Score=26.20 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=25.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (436)
+-+-.||.+|..+|.++..+..++--.+..+..-..++..+|
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666666666666666655555555555
No 58
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=37.85 E-value=30 Score=25.95 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 23 TMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
.-|..|+.|.+.|++...++-+.||+|++.
T Consensus 42 sce~KLa~ln~kL~~lE~~L~iLEAklsSI 71 (73)
T 3pp5_A 42 STRNKLSDLNEKLTILDRQVDYLEATFKTV 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999999853
No 59
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=37.64 E-value=84 Score=22.04 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHhhH
Q 013818 21 IGTMKKELAELQEDLAQ---AHRQVHISEARVATALDKL 56 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 56 (436)
|=.||.|+.+||.|..+ +-...+.+..|++..+.|+
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55689999999987654 4455566666666665554
No 60
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=36.24 E-value=40 Score=21.53 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=16.8
Q ss_pred hhhHHHHhhChhhhhccchhhHHHHHHHHHHHHH
Q 013818 3 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLA 36 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (436)
|-+||+|.|+. ..+|..|.+.|++.+.
T Consensus 6 LE~kVEeLl~~-------~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESE-------VWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-------hHHHHHHHHHHHHHhc
Confidence 45778777764 3456666666665554
No 61
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=36.08 E-value=15 Score=21.87 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQA 38 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~ 38 (436)
+.+||+|+++|=|.++.|
T Consensus 3 ~e~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467899999998888765
No 62
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=34.53 E-value=59 Score=24.53 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHIS 45 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (436)
|..|++.+..|+++|-++..++..+
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 63
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.38 E-value=82 Score=26.02 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=32.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHhhHHHHHHhhhhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVNDR 66 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 66 (436)
+|...|.++|.+|.+||..-.-|-...+ +++...-..++.+..+.+.+
T Consensus 12 ~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er 64 (123)
T 2zkr_v 12 KKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQT 64 (123)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999988776665542 44455555555555555443
No 64
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=33.23 E-value=1.2e+02 Score=22.52 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAH 39 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~ 39 (436)
...|.++|..+|+|++++.
T Consensus 13 ~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 13 KEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888766
No 65
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.23 E-value=90 Score=24.63 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
+..|..+|..+++.|..|..++-.++.+.+
T Consensus 53 ~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 53 LRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888777777776666
No 66
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.79 E-value=72 Score=31.91 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHhhHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVH-----------ISEARVATALDKLAYME 60 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 60 (436)
..-|++||.++|+-++++..|-. ..++.||+.+.|+-++|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELE 449 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999888753 34667777777777665
No 67
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=31.68 E-value=1.5e+02 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=20.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHI 44 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (436)
+|...|.++|.+|..||..-+-|-..
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~q~at 37 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARAVQAA 37 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999876655444
No 68
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=31.33 E-value=99 Score=22.45 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=20.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVH 43 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (436)
+|...|.++|.+|..||..-.-|-.
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~a 33 (66)
T 1r73_A 9 YTDEELKNLLEEKKRQLMELRFQLA 33 (66)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999887665544
No 69
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=31.22 E-value=76 Score=26.42 Aligned_cols=43 Identities=26% Similarity=0.405 Sum_probs=30.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHhhHHHHH
Q 013818 18 YKSIGTMKKELAELQEDLAQAHRQVHISEA---RVATALDKLAYME 60 (436)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 60 (436)
+|-+++||-++..+|+-+.||..++..+-. .-|-...||.++|
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELE 104 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELE 104 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHH
Confidence 466889999999999999999887765422 2234455666664
No 70
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.90 E-value=77 Score=31.65 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhh
Q 013818 22 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 67 (436)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (436)
.+|+.||.+|+++..+-..+.+..++.+...-.++-+ ++..|+++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~~~rr~l 50 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-SNMERKEL 50 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5788888888888888888888888888777666666 33444444
No 71
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=29.96 E-value=1.3e+02 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=21.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHIS 45 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (436)
+|...|.++|.+|.+||..-.-|-.+.
T Consensus 13 ~s~eEL~~~L~eLK~ELf~LRfq~atg 39 (124)
T 4a17_U 13 QTEEQLVGELGKLQTELSQLRIAKIAG 39 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568999999999999998766655444
No 72
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=29.84 E-value=1.3e+02 Score=22.26 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=22.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHIS 45 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (436)
+|...|.++|.+|..||.+-.-|-...
T Consensus 16 ~s~eEL~~~L~elk~ELf~LR~q~atg 42 (72)
T 3v2d_2 16 LSPVELEKLVREKKRELMELRFQASIG 42 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999998877665543
No 73
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.35 E-value=69 Score=24.71 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=22.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHhhHHH
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHI--SEARVATALDKLAY 58 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 58 (436)
.|..|+.|++.|+.+++++..++.. .+.-|....++|-+
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~ 49 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHT 49 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3556666666666666666665543 24556655555544
No 74
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=28.29 E-value=1.2e+02 Score=23.75 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
+..|..+|...++.|..|+..+-.++.+.+
T Consensus 53 iq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 53 LKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888887777776666
No 75
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.00 E-value=1.7e+02 Score=22.24 Aligned_cols=40 Identities=10% Similarity=0.280 Sum_probs=21.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHH
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 58 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (436)
.+...|..+|..||.|+++-.-++--..-.+++...+-.+
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555555554444444444433
No 76
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=27.88 E-value=86 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=28.4
Q ss_pred hHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhh
Q 013818 5 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHI 44 (436)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (436)
.+|+++.+.+. +. =...+|+|..+++=|+|++..+-.
T Consensus 42 q~~v~ai~sl~--~q-DpnV~kDLdn~~acL~k~~~t~~r 78 (97)
T 3g80_A 42 QETQATIQTLM--IA-DPNVNKDLRAFCEFLTVQHQRAYR 78 (97)
T ss_dssp HHHHHHHHTCC--CC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--cc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777776 22 277899999999999999887653
No 77
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=27.81 E-value=1.3e+02 Score=22.24 Aligned_cols=19 Identities=5% Similarity=0.188 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAH 39 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~ 39 (436)
...|.++|..+|++++++.
T Consensus 15 ~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 15 NEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567777788888888766
No 78
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.44 E-value=1.2e+02 Score=24.40 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhh
Q 013818 28 LAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 64 (436)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (436)
++.||.||++++.++.-..+.+.....++..||+-.+
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 79
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.20 E-value=1e+02 Score=30.65 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhh
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 67 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (436)
+..|+.+|+.|+++..+-...++..+.++...-.++...+. .|+++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~rr~l 50 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET-VRRTL 50 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45678888888888888888888888887776666665443 34443
No 80
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=26.81 E-value=1.3e+02 Score=24.83 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=20.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHI 44 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (436)
+|...|.++|.+|.+||..-.-|-.+
T Consensus 14 ~s~eEL~~~L~eLK~ELf~LRfq~at 39 (124)
T 3iz5_c 14 KSKDDLTKQLAELKTELGQLRIQKVA 39 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999876655443
No 81
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=26.67 E-value=52 Score=26.35 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=33.1
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHH
Q 013818 16 RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 59 (436)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (436)
++-+|++- .-|+.||.||..|...-|--+.-|++.++.|.++
T Consensus 57 ~~d~~~~~--avl~~~q~eYi~a~~e~~AQq~~lstLid~LGyv 98 (107)
T 2q0o_C 57 SDDPSISG--PVLQTLQDEYVARQKRSEAQQEELSDILDALGFV 98 (107)
T ss_dssp TTCTTSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44445553 3467899999999999999999999999988874
No 82
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=25.79 E-value=60 Score=24.42 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013818 23 TMKKELAELQEDLAQAHRQVHISEARVAT 51 (436)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (436)
.-|..|+.|.+.|++...++-+.||+|++
T Consensus 42 sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 42 SCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999999974
No 83
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=25.72 E-value=72 Score=25.58 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=27.1
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHhhHHHH
Q 013818 15 ARDYKSIGTMKKELAELQEDLAQAHRQVH--------ISEARVATALDKLAYM 59 (436)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 59 (436)
..|++-..-+++++..|+.||..-+.-++ .....|..|++++-++
T Consensus 15 ~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdl 67 (115)
T 3qfl_A 15 TEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVREL 67 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 45566666666666666666654443332 2344578888877765
No 84
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=25.71 E-value=66 Score=20.10 Aligned_cols=24 Identities=17% Similarity=0.305 Sum_probs=13.4
Q ss_pred hhhHHHHhhChhhhhccchhhHHHHHHHHHH
Q 013818 3 LHEKVVEVLNPLARDYKSIGTMKKELAELQE 33 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (436)
|-+||+|.|+. ..+|+.|.+.|++
T Consensus 5 LEdKvEeLl~~-------~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSK-------XYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------hhHHHHHHHHHHH
Confidence 45677776653 2355555555554
No 85
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=25.38 E-value=1.3e+02 Score=21.82 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=19.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVH 43 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (436)
+|...|.++|.+|..||..-.-|-.
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~a 33 (67)
T 2zjr_V 9 LQATDFAKEIDARKKELMELRFQAA 33 (67)
T ss_dssp SCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999887665544
No 86
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.35 E-value=68 Score=20.05 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=6.8
Q ss_pred hhhHHHHhhCh
Q 013818 3 LHEKVVEVLNP 13 (436)
Q Consensus 3 ~~~~~~~~~~~ 13 (436)
|-+||+|.|+.
T Consensus 5 LEdKVEell~~ 15 (33)
T 2wq1_A 5 LEDKIEENTSK 15 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45677776654
No 87
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.35 E-value=1.6e+02 Score=22.05 Aligned_cols=12 Identities=0% Similarity=0.041 Sum_probs=4.2
Q ss_pred HHHhhhhHHHHH
Q 013818 39 HRQVHISEARVA 50 (436)
Q Consensus 39 ~~~~~~~~~~~~ 50 (436)
..++-.++.|+.
T Consensus 54 E~eld~~ee~l~ 65 (81)
T 1ic2_A 54 EDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 88
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.61 E-value=1.4e+02 Score=28.84 Aligned_cols=41 Identities=7% Similarity=0.023 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 61 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (436)
+..|++||..|+..+..+..+++..++.+.+.-.|+.+|+.
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666665555655553
No 89
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.52 E-value=1.3e+02 Score=27.12 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
+..|++++++|+++|.++++...+-..|....
T Consensus 68 l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE 99 (213)
T 4ani_A 68 IAELEAKLSEMEHRYLRLYADFENFRRRTRQE 99 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555543
No 90
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.35 E-value=88 Score=24.49 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhH
Q 013818 24 MKKELAELQEDLAQAHRQVHISEARVATALDKL 56 (436)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (436)
|++++..|.+||.+-..++-.+.+.....+.||
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~ 86 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQSENKAFQAHLHKL 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555544444443
No 91
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=23.33 E-value=65 Score=20.31 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=13.3
Q ss_pred hhhHHHHhhChhhhhccchhhHHHHHHHHHH
Q 013818 3 LHEKVVEVLNPLARDYKSIGTMKKELAELQE 33 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (436)
|-+||+|.|+. -.+|..|++-|++
T Consensus 6 LEdKvEeLl~~-------~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSK-------GHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-------cHHHHHHHHHHHH
Confidence 45677777653 2345555555544
No 92
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=23.28 E-value=50 Score=22.68 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=18.9
Q ss_pred hhhccchhhHHHHHHHHHHHHHH
Q 013818 15 ARDYKSIGTMKKELAELQEDLAQ 37 (436)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (436)
+|-+-=|.+|++-|.+|++|+.+
T Consensus 23 ~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 23 AGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHh
Confidence 45556689999999999999864
No 93
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.22 E-value=1.2e+02 Score=28.52 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhh
Q 013818 23 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 64 (436)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (436)
.++.+|+.++.+|.+|..++...++.+..+-..+..+++|..
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~ 107 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQ 107 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776666655444444444433
No 94
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.11 E-value=1e+02 Score=29.51 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhh
Q 013818 23 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 63 (436)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (436)
.++.+|+.++.+|.+|..++...++++..+...+..+++|.
T Consensus 67 ~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 107 (369)
T 4dk0_A 67 TQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLY 107 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666665555554444443
No 95
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.49 E-value=1.9e+02 Score=21.45 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH
Q 013818 28 LAELQEDLAQAHRQVHISEARVATALDKLAYME 60 (436)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (436)
+.+||+.|.+.-.++..-++++..--.++.+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd 53 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKD 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444443
No 96
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.33 E-value=49 Score=28.87 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=31.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHhhHHHHHHhhhhhhh
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRLL 68 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l 68 (436)
+|...|.++|.+|.+||.+-+-|-...+ .++...-..+++|..+.|.+-+
T Consensus 73 lS~eEL~ekL~eLKkELFnLRfQkATGQLeNpsrIR~VRRdIARIkTVLrErel 126 (173)
T 3bbo_Z 73 KTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREI 126 (173)
T ss_dssp SCHHHHHHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999988766655432 2333444445555555544443
No 97
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.25 E-value=1.8e+02 Score=19.27 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHH
Q 013818 23 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 60 (436)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (436)
-|||+++.|..+-.+-....+..|.-+..-.+..+.+|
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 35666666655544444444444444444434444443
No 98
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.16 E-value=79 Score=24.99 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 26 KELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
.++..|+++|.+...+--..|+..+
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~ 50 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEAD 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333443333
No 99
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.75 E-value=1.4e+02 Score=23.44 Aligned_cols=34 Identities=6% Similarity=0.213 Sum_probs=22.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 19 KSIGTMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
|+++.+++++.++++++.+...+.-..++++...
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l 36 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDL 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888777665554444444433
No 100
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.74 E-value=1.2e+02 Score=22.75 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 21 IGTMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
|..|+++...|++|+.+-..+....+++++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888777777777666666654
No 101
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.23 E-value=1.1e+02 Score=23.52 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=23.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHISEARVA 50 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (436)
+..+|+.+++.|++++.+-..+++..++..+
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568888899999888888888777766443
No 102
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.10 E-value=97 Score=27.15 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=30.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhH
Q 013818 18 YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 56 (436)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (436)
-++|..|++++..|+++|..+..+.-....-+.++|.-+
T Consensus 134 ertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL 172 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999888777666666665443
No 103
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=20.92 E-value=1.2e+02 Score=23.53 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=23.6
Q ss_pred hhhHHHHhhChhhhhccch--------hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013818 3 LHEKVVEVLNPLARDYKSI--------GTMKKELAELQEDLAQAHRQVHISEARVATA 52 (436)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (436)
.|...++.++..+.+...- ..++++|..|.+.+.+-...+.-=..++..+
T Consensus 54 ~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~a 111 (118)
T 3uul_A 54 AHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDA 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554221 2355555555555544444444444444444
No 104
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=20.57 E-value=61 Score=26.35 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=12.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhH
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHISE 46 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (436)
+...|++++...++++.+-..++...|
T Consensus 83 ~~~~l~~~~~~e~~~~~~L~~~i~~Le 109 (117)
T 3kin_B 83 TAEEWKKKYEKEKEKNKALKSVIQHLE 109 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555544444444333
No 105
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.45 E-value=81 Score=19.88 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=6.4
Q ss_pred hhhHHHHhhCh
Q 013818 3 LHEKVVEVLNP 13 (436)
Q Consensus 3 ~~~~~~~~~~~ 13 (436)
|-+||+|.|+.
T Consensus 6 LEdKVEeLl~~ 16 (34)
T 1uo4_A 6 IEDKGEEILSK 16 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34666666653
No 106
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=20.44 E-value=2.7e+02 Score=20.63 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=32.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhh
Q 013818 20 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVND 65 (436)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (436)
+...+|+.+..|+.|...|-.++...|.-=.=-.+||-++|-+...
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~ 48 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQE 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4567888889999999988888888876444444566666655443
Done!