Query 013820
Match_columns 436
No_of_seqs 253 out of 1522
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 17:42:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 1.2E-49 4.2E-54 385.7 27.1 240 110-373 16-261 (261)
2 2iub_A CORA, divalent cation t 100.0 6.9E-37 2.4E-41 311.1 28.5 274 109-431 69-358 (363)
3 4ev6_A Magnesium transport pro 100.0 2.6E-35 9E-40 296.8 31.6 273 109-431 48-334 (339)
4 4egw_A Magnesium transport pro 99.8 9.8E-19 3.4E-23 171.2 21.5 216 109-375 48-280 (280)
5 3nvo_A Zinc transport protein 99.7 9.2E-16 3.1E-20 148.3 21.0 166 108-291 39-218 (264)
6 3ck6_A Putative membrane trans 99.7 3E-15 1E-19 143.8 18.4 204 109-374 30-252 (252)
7 2bbh_A Divalent cation transpo 99.6 1.4E-14 4.9E-19 140.3 13.2 168 109-290 60-242 (269)
8 2hn1_A CORA, magnesium and cob 99.5 2.1E-14 7.3E-19 139.0 10.8 168 109-291 65-243 (266)
9 2iub_A CORA, divalent cation t 95.8 0.19 6.4E-06 50.3 15.5 66 210-280 177-248 (363)
10 4ev6_A Magnesium transport pro 94.5 0.91 3.1E-05 44.7 15.7 174 210-428 153-334 (339)
11 1nfn_A Apolipoprotein E3; lipi 84.2 14 0.00047 33.5 12.4 69 220-289 59-128 (191)
12 4egw_A Magnesium transport pro 82.3 3.4 0.00012 39.3 7.9 68 209-281 152-225 (280)
13 3nvo_A Zinc transport protein 66.2 17 0.00058 33.8 8.0 62 214-281 148-215 (264)
14 1gs9_A Apolipoprotein E, APOE4 66.0 33 0.0011 30.2 9.4 22 265-286 104-125 (165)
15 2l7b_A Apolipoprotein E, APO-E 63.8 40 0.0014 32.7 10.3 69 221-290 68-137 (307)
16 3v86_A De novo design helix; c 59.3 18 0.00061 21.7 4.2 25 262-286 2-26 (27)
17 3s84_A Apolipoprotein A-IV; fo 53.2 1.5E+02 0.0052 28.0 12.3 33 325-357 88-121 (273)
18 3ck6_A Putative membrane trans 52.8 21 0.00071 32.9 6.0 60 214-281 137-199 (252)
19 3s8f_C Cytochrome C oxidase po 39.9 42 0.0014 21.9 4.0 27 405-431 1-27 (34)
20 1txp_A HnRNP C, heterogeneous 39.4 32 0.0011 21.4 3.2 24 263-286 2-25 (28)
21 1nfn_A Apolipoprotein E3; lipi 38.5 76 0.0026 28.4 7.2 22 264-285 70-91 (191)
22 3swf_A CGMP-gated cation chann 38.1 70 0.0024 24.5 5.7 48 227-282 7-54 (74)
23 3r2p_A Apolipoprotein A-I; amp 35.6 2.3E+02 0.0078 24.9 11.0 21 265-285 109-129 (185)
24 3ghg_A Fibrinogen alpha chain; 34.8 2.8E+02 0.0097 28.9 11.3 18 349-366 141-158 (562)
25 2a01_A Apolipoprotein A-I; fou 34.8 2.7E+02 0.0093 25.6 10.7 75 264-353 107-183 (243)
26 3s84_A Apolipoprotein A-IV; fo 32.8 3.2E+02 0.011 25.7 13.9 32 324-355 109-141 (273)
27 3r2p_A Apolipoprotein A-I; amp 27.8 2.4E+02 0.0082 24.7 8.6 24 265-288 87-110 (185)
28 3oja_B Anopheles plasmodium-re 26.8 5.2E+02 0.018 26.3 13.1 19 342-360 561-579 (597)
29 3trt_A Vimentin; cytoskeleton, 24.5 2.2E+02 0.0075 21.2 7.3 28 259-286 48-75 (77)
30 1t3j_A Mitofusin 1; coiled coi 23.6 2.9E+02 0.0097 22.2 8.7 33 214-246 34-66 (96)
31 3ghg_A Fibrinogen alpha chain; 22.3 6.8E+02 0.023 26.1 12.0 8 233-240 63-70 (562)
32 2lem_A Apolipoprotein A-I; lip 21.8 2.1E+02 0.0072 25.8 7.2 65 224-288 66-130 (216)
33 1gs9_A Apolipoprotein E, APOE4 21.7 1.7E+02 0.0057 25.6 6.1 11 328-338 109-119 (165)
34 3t98_B Nucleoporin NUP58/NUP45 20.4 3.2E+02 0.011 21.6 8.1 64 226-289 11-80 (93)
35 2hn1_A CORA, magnesium and cob 20.2 2.6E+02 0.0088 25.6 7.6 67 210-281 169-240 (266)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-49 Score=385.71 Aligned_cols=240 Identities=22% Similarity=0.387 Sum_probs=220.3
Q ss_pred eeEEEEEecCCceeEee--ecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEEeecccceeeeecCeEEEEec
Q 013820 110 VYEVVEVKSNGVVSTRK--INRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIFDY 187 (436)
Q Consensus 110 ~~~wi~id~~G~~~~~~--~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Ilvnle~IraII~~d~Vllf~~ 187 (436)
.+.|+.||..|++..+. ++|++|++++||+|||||.|||++ .++.|+|++|++||+||+++|||||++|.|++|++
T Consensus 16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~--~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~ 93 (261)
T 3rkg_A 16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSS--IDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDT 93 (261)
T ss_dssp EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCC--SSCCCEEEECSSCEEEEETTEEEEECSSCEEEECC
T ss_pred eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccc--cCCCceEEecCCeEEEechhceEEEEcceEEEEcC
Confidence 68899999999999865 999999999999999999999974 46899999999999999999999999999999998
Q ss_pred CCCCcc----chHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHH
Q 013820 188 NRKGGQ----AFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLR 263 (436)
Q Consensus 188 ~~~~~~----~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~ 263 (436)
.++... .|+.++..|+++++ .+.+||||+|||+||.++|..|++++..++..+..++++|+++++++.|++|+
T Consensus 94 ~~~~~~~~~~~f~~~l~~~l~~~~---~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll 170 (261)
T 3rkg_A 94 TNPSAAAKLSVLMYDLESKLSSTK---NNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLL 170 (261)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCSS---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 764332 58889999997643 45799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 013820 264 ISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCES 343 (436)
Q Consensus 264 ~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~LLE~Y~r~vd~ 343 (436)
..|++|..+.++++.+|++|+++|++|+||+.||||+++. ..++|+|+|||||+||+|+|+
T Consensus 171 ~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~-------------------~~~d~eElEmLLE~Y~~q~d~ 231 (261)
T 3rkg_A 171 IKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS-------------------PKDNFSDLEMLIETYYTQCDE 231 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC-------------------TTSCCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC-------------------CccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997641 256789999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 013820 344 CHGQSERLLDSAKEMEDSIAVNLSSRRLEV 373 (436)
Q Consensus 344 i~~~le~L~e~i~~ted~i~i~Ld~~rN~i 373 (436)
+.+.+++++++|++|||+|++.||++||++
T Consensus 232 ~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L 261 (261)
T 3rkg_A 232 YVQQSESLIQDIKSTEEIVNIILDANRNSL 261 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 999999999999999999999999999985
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=6.9e-37 Score=311.11 Aligned_cols=274 Identities=18% Similarity=0.164 Sum_probs=207.3
Q ss_pred ceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEE--------------eecccce
Q 013820 109 PVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAIL--------------LNLGSLR 174 (436)
Q Consensus 109 ~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Il--------------vnle~Ir 174 (436)
..+.|+.+++-.+...++ .|++.|||||..++++.. ..++|++...++.++ +..+++.
T Consensus 69 ~~~~Wi~l~~p~~~~e~~----~l~~~f~l~~l~ied~l~----~~~rpk~e~~~~~lfivl~~~~~~~~~~~~~~~~v~ 140 (363)
T 2iub_A 69 STPTWINITGIHRTDVVQ----RVGEFFGIHPLVLEDILN----VHQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVS 140 (363)
T ss_dssp SSCEEEEEECTTCHHHHH----HHHHHTTCCHHHHHHHHC----CSSCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred CCeEEEEeCCCCCHHHHH----HHHHHcCcChhHHHHHhC----CCCCCeEEEECCEEEEEEEeeeecccccccceEEEE
Confidence 358899999986555555 899999999999999988 579999998887642 2345689
Q ss_pred eeeecCeEEEEecCCCCccchHhhhhhhhCCCCCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCc
Q 013820 175 AITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNG-SPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNR 253 (436)
Q Consensus 175 aII~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~-~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~ 253 (436)
.+++++.|++|...+ .+.++.+++|++...... ... |.. ++.++++.+++.+...++.++++++.+++++.+.
T Consensus 141 ~~l~~~~liTv~~~~---~~~~~~v~~rl~~~~~~~~~~~-~~~--ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~ 214 (363)
T 2iub_A 141 LILTKNCVLMFQEKI---GDVFDPVRERIRYNRGIIRKKR-ADY--LLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLER 214 (363)
T ss_dssp EEEETTEEEEEESSS---CCSCHHHHHHHHTTCTTTTTSC-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred EEEECCEEEEEEeCC---CchHHHHHHHHHhcCCccccCC-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999865 367788999986542211 111 222 5667777777788888888999999999988877
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHH
Q 013820 254 LTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEML 333 (436)
Q Consensus 254 v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~L 333 (436)
...+.+.+|+.+||++..+++.++|+++++..|.+.+.... .++....
T Consensus 215 ~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~--------------------------------~~~~~~~ 262 (363)
T 2iub_A 215 PEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLI--------------------------------EKETVPY 262 (363)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSC--------------------------------HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--------------------------------CHHHHHH
Confidence 77788999999999999999999999999999987643210 0122222
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCC-CCchHH
Q 013820 334 LENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLE-EHVFAF 412 (436)
Q Consensus 334 LE~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~E-e~~~gF 412 (436)
++.-..++..+.+.++.+++.+..+.|.+...+++++|++|| +||++|++|+|+|||||+|||||++||| +|+|||
T Consensus 263 lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk---~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy 339 (363)
T 2iub_A 263 FRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMK---VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGY 339 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTSCC--------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHH
Confidence 222233444556677888999999999999999999999999 5999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013820 413 WLTTAGIIVGAVMAFLPHV 431 (436)
Q Consensus 413 ~~v~~~mv~~~v~~~~~~~ 431 (436)
|+++++|+++|+++|++|.
T Consensus 340 ~~~l~~m~~i~~~~~~~Fk 358 (363)
T 2iub_A 340 PVVLAVMGVIAVIMVVYFK 358 (363)
T ss_dssp HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888774
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.6e-35 Score=296.82 Aligned_cols=273 Identities=17% Similarity=0.139 Sum_probs=222.3
Q ss_pred ceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEEe-----------ecccceeee
Q 013820 109 PVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILL-----------NLGSLRAIT 177 (436)
Q Consensus 109 ~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Ilv-----------nle~IraII 177 (436)
.++-||++.+-...+ +. .|++.|||||..++++.. ..++|++...++..++ ...++..++
T Consensus 48 ~~~vWIdl~~Pt~~E-~~----~l~~~~~l~~~~~ed~l~----~~~rpk~e~~~~~~~iv~~~~~~~~~~~~~~v~i~l 118 (339)
T 4ev6_A 48 YRLIWIDCYDPKDEE-LY----KLSKKIGISVSDLQIGLD----EQEIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYI 118 (339)
T ss_dssp CSCEEEEEESCCHHH-HH----HHHHHHTCCHHHHHHHHC----TTCCCEEEEETTEEEEECCCCCCTTTCCCCCCEEEE
T ss_pred CCEEEEEeCCCCHHH-HH----HHHHHHCcCHhHHHHhhC----CccCCeEEEECCEEEEEEecCccCCCcceEEEEEEE
Confidence 568899997654432 33 799999999999999987 5799999988886442 456799999
Q ss_pred ecCeEEEEecCCCCccchHhhhhhhhCCCCCCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccc
Q 013820 178 MQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNG--SPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLT 255 (436)
Q Consensus 178 ~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~--~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~ 255 (436)
+++.++++...+ .+.++.+++++..++... .....| ++.++++.+++.+...++.++++++.+++++.....
T Consensus 119 ~~~~lITv~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~ 192 (339)
T 4ev6_A 119 KNNLLLTIHSDK---IKAIGRLHKLISTKKPRIVFERGIGF---LLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD 192 (339)
T ss_dssp ETTEEEEEESSC---CHHHHHHHHHSSSSSSCCCCCSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred ECCeeEEeecCC---cchhHHHHHHHHcCCCccccccCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999998765 377889999987654321 112222 566778888888888888899999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHHHH
Q 013820 256 ADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLE 335 (436)
Q Consensus 256 ~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~LLE 335 (436)
.+.+++|+.+|+++..+++.+.|.++++..+.+.+.... + ++....++
T Consensus 193 ~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~----~----------------------------~~~~~~l~ 240 (339)
T 4ev6_A 193 REVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPIT----T----------------------------KEDRENFE 240 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTB----C----------------------------HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccccc----c----------------------------hHHHHHHH
Confidence 899999999999999999999999999999987643320 0 12222333
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCC-CCchHHHH
Q 013820 336 NYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLE-EHVFAFWL 414 (436)
Q Consensus 336 ~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~E-e~~~gF~~ 414 (436)
....++..+.+.++.+++.+..+.|.+...+++++|++||+ ||++|++|+|+|||||+|||||++||| +|+||||+
T Consensus 241 dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~---LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~ 317 (339)
T 4ev6_A 241 DLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKI---LTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWL 317 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHH
Confidence 34445556677788889999999999999999999999995 999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013820 415 TTAGIIVGAVMAFLPHV 431 (436)
Q Consensus 415 v~~~mv~~~v~~~~~~~ 431 (436)
++++|+++++++|++|-
T Consensus 318 ~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 318 VMALMVVIIMIFVYIFR 334 (339)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998888774
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=9.8e-19 Score=171.16 Aligned_cols=216 Identities=14% Similarity=0.089 Sum_probs=159.5
Q ss_pred ceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEE-----------eecccceeee
Q 013820 109 PVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAIL-----------LNLGSLRAIT 177 (436)
Q Consensus 109 ~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Il-----------vnle~IraII 177 (436)
..|-||.+.+-.... +. .|++.|||||..++++.. ..++|++...++.++ +..+++.+++
T Consensus 48 ~~~vWIdl~~Pt~eE-l~----~l~~~f~lh~l~leD~l~----~~~rpKie~~~d~~fivl~~~~~~~~~~t~~v~i~l 118 (280)
T 4egw_A 48 YRLIWIDCYDPKDEE-LY----KLSKKIGISVSDLQIGLD----EQEIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYI 118 (280)
T ss_dssp SSCEEEEEESCCHHH-HH----HHHHHHTCCHHHHHHHTC----TTCCCEEECCSSSEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CeEEEEEeCCCCHHH-HH----HHHHHHCcCHHHHHHHhC----cccCceEEEECCEEEEEEEeccccccceeeeEEEEE
Confidence 578899998765533 33 899999999999999988 579999998877643 2456799999
Q ss_pred ecCeEEEEecCCCCccchHhhhhhhhCCCCCCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccc
Q 013820 178 MQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNG--SPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLT 255 (436)
Q Consensus 178 ~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~--~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~ 255 (436)
+++++++|+..+ .+.++.+++|+....... .....| ++.++++.+++.|...++.++++++.+++.+.....
T Consensus 119 ~~~~lITv~~~~---~~~~~~v~~~l~~~~~~~~~~~g~~~---ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~ 192 (280)
T 4egw_A 119 KNNLLLTIHSDK---IKAIGRLHKLISTKKPRIVFERGIGF---LLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD 192 (280)
T ss_dssp ETTEEEEEESSC---CHHHHHHHHHHHHSCCSSSCTTTTTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ECCEEEEEecCC---cchHHHHHHHHHhcCcccccccCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999866 378899999886443211 111123 445666666777777777889999899999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHHHH
Q 013820 256 ADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLE 335 (436)
Q Consensus 256 ~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~LLE 335 (436)
++.+.+|+.+||+|..|++.++|+++++..|.+.+.... . ++..
T Consensus 193 ~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~----~----------------------------~~~~---- 236 (280)
T 4egw_A 193 REVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPIT----T----------------------------KEDR---- 236 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC----C----------------------------HHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccC----C----------------------------HHHH----
Confidence 899999999999999999999999999999987654321 0 1222
Q ss_pred HHHHHH-HH---HHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 013820 336 NYLQRC-ES---CHGQSERLLDSAKEMEDSIAVNLSSRRLEVSR 375 (436)
Q Consensus 336 ~Y~r~v-d~---i~~~le~L~e~i~~ted~i~i~Ld~~rN~imk 375 (436)
.||+++ ++ +.+.++.+++.+..+.|.+...+++++|++||
T Consensus 237 ~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~iMK 280 (280)
T 4egw_A 237 ENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMK 280 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 566665 44 45556778899999999999999999999997
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.70 E-value=9.2e-16 Score=148.27 Aligned_cols=166 Identities=9% Similarity=0.023 Sum_probs=132.5
Q ss_pred CceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEEe--------------ecccc
Q 013820 108 EPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILL--------------NLGSL 173 (436)
Q Consensus 108 ~~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Ilv--------------nle~I 173 (436)
...+.|+.+++-.. ..+. .|.+.|||||..++++.. .+++|++...++.+++ .++++
T Consensus 39 ~~~~~Wi~l~~p~~-~e~~----~l~~~~~l~~l~~ed~~~----~~~rpk~e~~~~~~fivl~~~~~~~~~~~~~~~~v 109 (264)
T 3nvo_A 39 SQHPCWLHLNYTHP-DSAR----WLASTPLLPNNVRDALAG----ESSRPRVSRMGEGTLITLRCINGSTDERPDQLVAM 109 (264)
T ss_dssp TTSCEEEEEETTSH-HHHH----HHHHCTTSCTTTHHHHTT----CCCSCEEEEETTEEEEEEECC----------CCEE
T ss_pred CCCCEEEEeCCCCH-HHHH----HHHhccCCCHHHHHHHhC----CCCCCceEEECCEEEEEEEecccCCCCCCcceEEE
Confidence 35689999998544 3334 799999999999999987 5799999988886543 35679
Q ss_pred eeeeecCeEEEEecCCCCccchHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCc
Q 013820 174 RAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNR 253 (436)
Q Consensus 174 raII~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~ 253 (436)
++++++++|++|+..+ .+.++.+++|+..+... . -|. .++.++++.+++.|...++.++++++.+++.+..+
T Consensus 110 ~~~l~~~~lITv~~~~---~~~~~~v~~rl~~~~~~--~-~~~--~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~ 181 (264)
T 3nvo_A 110 RLYMDERFIVSTRQRK---VLALDDVVSDLQEGTGP--V-DCG--GWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ 181 (264)
T ss_dssp EEEECSSEEEEEESSC---CHHHHHHHHHHHTTCSC--S-SHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred EEEEeCCEEEEEecCC---cCcHHHHHHHHHhCCCC--C-CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999865 38889999999754421 1 133 36778888888888888889999999998888766
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 013820 254 LTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPH 291 (436)
Q Consensus 254 v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~ 291 (436)
..+.+.+|+.+||+++.|++.++|+++++.+|.+.+.
T Consensus 182 -~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 218 (264)
T 3nvo_A 182 -QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERL 218 (264)
T ss_dssp -CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred -CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCC
Confidence 6778999999999999999999999999999988654
No 6
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.66 E-value=3e-15 Score=143.78 Aligned_cols=204 Identities=13% Similarity=0.077 Sum_probs=149.7
Q ss_pred ceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecC-eEE--ee------------cccc
Q 013820 109 PVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREH-AIL--LN------------LGSL 173 (436)
Q Consensus 109 ~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~-~Il--vn------------le~I 173 (436)
+. .|+.+.+-.. ..++ .|.+. ||||..++++.. ..++|++...++ .++ ++ +..+
T Consensus 30 ~~-~Wi~l~~p~~-~e~~----~l~~~-~l~~l~~ed~l~----~~~rpk~e~~~d~~lfivl~~~~~~~~~~~~~~~~l 98 (252)
T 3ck6_A 30 PN-HWYHCERLHP-DIRG----WLEDN-HVPRATVDHLLA----DESRPSFHPLDDDNFMLILRGINMNENASPEDMLSI 98 (252)
T ss_dssp TT-EEEEEETTCT-THHH----HHHHT-TCCHHHHHHHHC----SSCCCEEEECSTTCEEEEEEECCCSTTCCTTSCEEE
T ss_pred CC-EEEEecCCCH-HHHH----HHHHc-CCCHHHHHHHhC----CCCCCceEEeCCceEEEEEecCccCCCCCcccEEEE
Confidence 44 8999988653 3344 79999 999999999998 579999999988 753 22 1225
Q ss_pred eeeeecCeEEEEecCCCCccchHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCc
Q 013820 174 RAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNR 253 (436)
Q Consensus 174 raII~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~ 253 (436)
.+++++++|++++..+ .+.++.+++|+..+.+. . -|.. +|.++++.+++.|...++.++++++.++++
T Consensus 99 ~i~l~~~~lITvr~~~---~~~~~~v~~~l~~~~~~--~-~~~~--ll~~lld~ivd~y~~~l~~l~~~id~lE~~---- 166 (252)
T 3ck6_A 99 RILYFQGALISTRKIP---SRAIMEIRQALAEHKGP--K-SLAS--LLNQIIEGLNGKIDLYLDTIEETLNEFDVN---- 166 (252)
T ss_dssp EEEEETTEEEEEESSC---CHHHHHHHHHHHTTCSC--S-SHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTCCTT----
T ss_pred EEEEeCCEEEEEeCCC---cchHHHHHHHHHhCCCC--C-CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 6699999999999865 37889999998654321 1 1332 556777777777777788888877666655
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHH
Q 013820 254 LTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEML 333 (436)
Q Consensus 254 v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~L 333 (436)
.+.+.+|+.+||++..|++.++|+|+++.+|.+.+..+ . ++.
T Consensus 167 --~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~-----~----------------------------~~~--- 208 (252)
T 3ck6_A 167 --DESTYNHIAAQKALISIKRFIRPQQYAIRDLIESESEL-----V----------------------------TSR--- 208 (252)
T ss_dssp --CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----H----------------------------HTS---
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----C----------------------------HHH---
Confidence 24578899999999999999999999999998764321 0 111
Q ss_pred HHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 013820 334 LENYLQRC----ESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVS 374 (436)
Q Consensus 334 LE~Y~r~v----d~i~~~le~L~e~i~~ted~i~i~Ld~~rN~im 374 (436)
..|++++ ..+.+.++.+++.+..+.|.+...+++++|++|
T Consensus 209 -~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 209 -PHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKTNKNS 252 (252)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1455544 444666788899999999999999999999987
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.57 E-value=1.4e-14 Score=140.25 Aligned_cols=168 Identities=16% Similarity=0.155 Sum_probs=127.5
Q ss_pred ceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEE--e------------ecccce
Q 013820 109 PVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAIL--L------------NLGSLR 174 (436)
Q Consensus 109 ~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Il--v------------nle~Ir 174 (436)
..+.|+.+.+..+...+. .|++.||||+..++++.. ..++|++...++.++ + ..+++.
T Consensus 60 ~~~~Wi~l~~p~~~~e~~----~l~~~f~l~~l~~ed~l~----~~~rpk~e~~~d~lfivl~~~~~~~~~~~~~~~~v~ 131 (269)
T 2bbh_A 60 STPTWINITGIHRTDVVQ----RVGEFFGTHPLVLEDILN----VHQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVS 131 (269)
T ss_dssp SSCEEEEEECTTCHHHHH----HHHHHHTCCHHHHHHHHC----TTCCCEEEECSSEEEEEEEEEECCC--CCCEEEEEE
T ss_pred CCeEEEEecCCCCHHHHH----HHHHHcCCCHhHHHHHhC----cCCCceEEEECCEEEEEEEeeeecCCcCceeEEEEE
Confidence 358899999986555555 899999999999999988 579999998888652 2 234688
Q ss_pred eeeecCeEEEEecCCCCccchHhhhhhhhCCCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCc
Q 013820 175 AITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLN-GSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNR 253 (436)
Q Consensus 175 aII~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~-~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~ 253 (436)
+++++++|++|+..+ .+.++.+++|++..... ......| ++.++++.+++.|...++.++++++.+++.+.+.
T Consensus 132 ~~l~~~~lITv~~~~---~~~~~~v~~rl~~~~~~~~~~~~~~---ll~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~ 205 (269)
T 2bbh_A 132 LILTKNCVLMFQEKI---GDVFDPVRERIRYNRGIIRKKRADY---LLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLER 205 (269)
T ss_dssp EEEETTEEEEEESSS---CCSCHHHHHHHHTTCTTGGGSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred EEEECCEEEEEECCC---CCcHHHHHHHHHhcCCchhhCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999765 36778899998764221 0111122 4556777777777777778898888888888777
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013820 254 LTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDP 290 (436)
Q Consensus 254 v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd 290 (436)
...+.+.+|+.+|+++..|++.++|+++++..|.+.+
T Consensus 206 ~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 206 PEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6677899999999999999999999999999998754
No 8
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.53 E-value=2.1e-14 Score=139.04 Aligned_cols=168 Identities=14% Similarity=0.112 Sum_probs=132.6
Q ss_pred ceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEE-----------eecccceeee
Q 013820 109 PVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAIL-----------LNLGSLRAIT 177 (436)
Q Consensus 109 ~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Il-----------vnle~IraII 177 (436)
+.+.|+.+++.++...++ .|++.||||+..++++.. ..++|++...++.++ +..++|.+++
T Consensus 65 ~~~~Wi~l~~p~~~~e~~----~l~~~f~l~~l~~ed~l~----~~~rpk~e~~~d~lfivl~~~~~~~~~~~~~v~~~l 136 (266)
T 2hn1_A 65 NKKLWIDVVGVHDESLIA----KICEFLGIHPLAAEDILN----TAQRVKIEDYDDHLFLVLKILLYNETLEIDQLSLVL 136 (266)
T ss_dssp TSEEEEEECCCCCHHHHH----HHHHTTTCCHHHHHHHHB----TTCCSEEEECSSEEEEEEEEEEESSSEEEEEEEEEE
T ss_pred CCeEEEEeCCCCCHHHHH----HHHHHcCCCHhHHHHHhC----CCCCCeEEEECCEEEEEEEeccccCccceEEEEEEE
Confidence 468899999976555555 899999999999999988 579999998888652 2346789999
Q ss_pred ecCeEEEEecCCCCccchHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccchh
Q 013820 178 MQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTAD 257 (436)
Q Consensus 178 ~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~ 257 (436)
++++|++|+..+ .+.++.+++|+.......... |. .++.++++.+++.|...++.++++++.+++++..... +
T Consensus 137 ~~~~lITv~~~~---~~~~~~v~~rl~~~~~~~~~~-~~--~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-~ 209 (266)
T 2hn1_A 137 KKNLVATFEERE---YWILDSIRSRLKSGGRMRKLA-GD--YLAYTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS-T 209 (266)
T ss_dssp ETTEEEEEESSS---SCSTHHHHHHHHSSSHHHHSC-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-C
T ss_pred ECCEEEEEEcCC---CChHHHHHHHHHhCCchhhcC-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-H
Confidence 999999999765 366789999986542100011 22 1556777777777777788888888888888866666 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 013820 258 ILEQLRISKQTLVELSSRAGALRQMLLDLLEDPH 291 (436)
Q Consensus 258 ~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~ 291 (436)
.+.+|+.+|+++..|++.++|+++++..|.+.+.
T Consensus 210 ~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 243 (266)
T 2hn1_A 210 LIGKIHSLKREILAFRNAVWPLRDVLSFFTRVEH 243 (266)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999998654
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=95.82 E-value=0.19 Score=50.25 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=36.3
Q ss_pred CCCCcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHhhccCccch---hHHHHHHHHHHHHHHHHHHHHHHH
Q 013820 210 GSPCMPFMIEAVEAALLSR---VQRLEQRLMHIEPRVQGLLEVLPNRLTA---DILEQLRISKQTLVELSSRAGALR 280 (436)
Q Consensus 210 ~~~~LpfE~~aLEaiLd~v---~~~Le~~l~~Le~~v~~~ld~L~~~v~~---~~L~~L~~LKr~L~~l~~~v~~vr 280 (436)
+.+++.|. +++++++.+ ++.++++++++|+++.. .-..+... ..-+++..+|+.+..++..+..+.
T Consensus 177 ~~~~ll~~--lld~ivd~y~~~l~~l~~~id~lE~~v~~---~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 248 (363)
T 2iub_A 177 RADYLLYS--LIDALVDDYFVLLEKIDDEIDVLEEEVLE---RPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLY 248 (363)
T ss_dssp CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTS---SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566675 777887776 44555677777765432 11111111 112336667777766666665554
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=94.52 E-value=0.91 Score=44.73 Aligned_cols=174 Identities=11% Similarity=0.055 Sum_probs=86.5
Q ss_pred CCCCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhhccCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013820 210 GSPCMPFMIEAVEAALLSRV---QRLEQRLMHIEPRVQGLLEVLPNRLTAD---ILEQLRISKQTLVELSSRAGALRQML 283 (436)
Q Consensus 210 ~~~~LpfE~~aLEaiLd~v~---~~Le~~l~~Le~~v~~~ld~L~~~v~~~---~L~~L~~LKr~L~~l~~~v~~vre~L 283 (436)
+.+++-|. +|+.+++.+. +.++++++++|+.+. +.-.++.-.+ .-+.+..+++.+...+..+..++..-
T Consensus 153 ~~~~ll~~--lld~ivd~~~~~l~~l~~~i~~lE~~l~---~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~ 227 (339)
T 4ev6_A 153 GIGFLLYH--ILNEITRSYSRILMNLEDELEELEDKLL---AGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKY 227 (339)
T ss_dssp CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTST---TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcc
Confidence 56677886 8899998875 556677888887652 2222111111 12346677887777777766655432
Q ss_pred HHHhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013820 284 LDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIA 363 (436)
Q Consensus 284 ~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~LLE~Y~r~vd~i~~~le~L~e~i~~ted~i~ 363 (436)
......+. ..++.+ . .++...+...++.|.. .+..+ .+.....++
T Consensus 228 ~~~~~~~~---~~~l~d---------------------v-~~~~~~l~e~~~~~~e-------~l~~l---~d~~~s~is 272 (339)
T 4ev6_A 228 LPITTKED---RENFED---------------------L-YYDTLQLIDMSATYRE-------VLTSM---MDITLSLEN 272 (339)
T ss_dssp BTTBCHHH---HHHHHH---------------------H-HHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHH
T ss_pred ccccchHH---HHHHHH---------------------H-HHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHH
Confidence 22222111 111110 0 1111222222333322 22222 222334456
Q ss_pred HHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhH-h-ccCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 013820 364 VNLSSRRLEVSRVELLLQVGAFCVAVGALIAGI-F-GMNLKSYLEEHVFAFWLTTAGIIVGAVMAFL 428 (436)
Q Consensus 364 i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGi-F-GMNf~~~~Ee~~~gF~~v~~~mv~~~v~~~~ 428 (436)
..++..+..+-- +|++-+..+..|=+.|. | ||=..+.+- .-+..++++++++++.++.|-
T Consensus 273 ~~~N~~mk~LTi----it~IflP~T~IaGiyGMNf~~mPel~~~~-gy~~~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 273 IKMNQIMKILTM----VTTIFAVPMWITGIYGMNFSYLPLANNPQ-GFWLVMALMVVIIMIFVYIFR 334 (339)
T ss_dssp HHHHHHHHHHHH----HHHHSSHHHHHHHHTTCCCSCCTTSSCTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhhccCcCCCCCCccCch-HHHHHHHHHHHHHHHHHHHHH
Confidence 666666655544 44444444444444454 3 465544443 345667777777777776663
No 11
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=84.17 E-value=14 Score=33.46 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013820 220 AVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLR-ISKQTLVELSSRAGALRQMLLDLLED 289 (436)
Q Consensus 220 aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~-~LKr~L~~l~~~v~~vre~L~~LL~d 289 (436)
=+...+....+.+...+..+...+.+..+++...+..+ ++.++ .+++.+-.++.++.|..+.+..-+..
T Consensus 59 el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~~-~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~ 128 (191)
T 1nfn_A 59 ELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKE-LQAAQARLGADMEDVCGRLVQYRGEVQAMLGQ 128 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC----------CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455566666666666666666666665555544332 33333 46788899999999999988766553
No 12
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=82.32 E-value=3.4 Score=39.27 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=45.0
Q ss_pred CCCCCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhhccCccchh--HH-HHHHHHHHHHHHHHHHHHHHHH
Q 013820 209 NGSPCMPFMIEAVEAALLSRV---QRLEQRLMHIEPRVQGLLEVLPNRLTAD--IL-EQLRISKQTLVELSSRAGALRQ 281 (436)
Q Consensus 209 ~~~~~LpfE~~aLEaiLd~v~---~~Le~~l~~Le~~v~~~ld~L~~~v~~~--~L-~~L~~LKr~L~~l~~~v~~vre 281 (436)
.|.+++.|. +|+++++.+. +.++.+++.+|+.+. ..-.+..-.+ .+ +.+..+|+.+..++..+..+..
T Consensus 152 ~g~~~ll~~--lld~ivd~y~~~l~~i~~~id~lE~~l~---~~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~ 225 (280)
T 4egw_A 152 RGIGFLLYH--ILNEITRSYSRILMNLEDELEELEDKLL---AGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKR 225 (280)
T ss_dssp TTTTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTT---TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 467889997 8999999874 566688888887653 2222221111 12 3477888888888877776653
No 13
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=66.22 E-value=17 Score=33.75 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=39.5
Q ss_pred cchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhhccCccchh--HH-HHHHHHHHHHHHHHHHHHHHHH
Q 013820 214 MPFMIEAVEAALLSRV---QRLEQRLMHIEPRVQGLLEVLPNRLTAD--IL-EQLRISKQTLVELSSRAGALRQ 281 (436)
Q Consensus 214 LpfE~~aLEaiLd~v~---~~Le~~l~~Le~~v~~~ld~L~~~v~~~--~L-~~L~~LKr~L~~l~~~v~~vre 281 (436)
+.|. +|+.+++.+. +.++.+++.+|+.+. +. .+..-.+ .+ +.+..+|+.+..++..+..+..
T Consensus 148 ll~~--lld~ivd~y~~~l~~l~~~id~lE~~l~---~~-~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 215 (264)
T 3nvo_A 148 WLVD--VCDALTDHASEFIEELHDKIIDLEDNLL---DQ-QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLAS 215 (264)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHTTC--------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC-CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 4565 8899999885 555677888887653 33 3433322 23 3477888888888888776654
No 14
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=66.00 E-value=33 Score=30.23 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013820 265 SKQTLVELSSRAGALRQMLLDL 286 (436)
Q Consensus 265 LKr~L~~l~~~v~~vre~L~~L 286 (436)
+...+-.+|.++.|.++.+...
T Consensus 104 L~~d~EelR~~l~p~~~el~~~ 125 (165)
T 1gs9_A 104 LGADMEDVRGRLVQYRGEVQAM 125 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666655555433
No 15
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=63.77 E-value=40 Score=32.75 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013820 221 VEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLR-ISKQTLVELSSRAGALRQMLLDLLEDP 290 (436)
Q Consensus 221 LEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~-~LKr~L~~l~~~v~~vre~L~~LL~dd 290 (436)
++..+....+.+......+...+.++.+++...+.. ..+.|+ .+.+.+..++.++.|.++.+...++.+
T Consensus 68 l~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~~-~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~ 137 (307)
T 2l7b_A 68 LRALMDETMKELKAYKSELEEQLTPVAEETRARLSK-ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQS 137 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444444444333333222222221 222333 456788899999999999998887754
No 16
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=59.33 E-value=18 Score=21.69 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013820 262 LRISKQTLVELSSRAGALRQMLLDL 286 (436)
Q Consensus 262 L~~LKr~L~~l~~~v~~vre~L~~L 286 (436)
++++|.+.-+++..++.+++.+.++
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 5788999999999999998887765
No 17
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=53.16 E-value=1.5e+02 Score=28.01 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHH
Q 013820 325 EEEEEIEMLLENYLQRC-ESCHGQSERLLDSAKE 357 (436)
Q Consensus 325 ~~~eevE~LLE~Y~r~v-d~i~~~le~L~e~i~~ 357 (436)
.+.+++..-|.+|...+ ..+.+.++.+++.+.-
T Consensus 88 ~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~P 121 (273)
T 3s84_A 88 ENADSLQASLRPHADELKAKIDQNVEELKGRLTP 121 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHh
Confidence 34556666677777666 4455555555554443
No 18
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=52.78 E-value=21 Score=32.93 Aligned_cols=60 Identities=10% Similarity=-0.067 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013820 214 MPFMIEAVEAALLSRV---QRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQ 281 (436)
Q Consensus 214 LpfE~~aLEaiLd~v~---~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre 281 (436)
+.|. +++.+++.+. +.++.+++++|+. .+.+..+ ...-+.+..+|+.+.-++..+..+..
T Consensus 137 ll~~--lld~ivd~y~~~l~~l~~~id~lE~~-~~~~~~l-----~~lrr~l~~lrr~l~p~r~~l~~L~r 199 (252)
T 3ck6_A 137 LLNQ--IIEGLNGKIDLYLDTIEETLNEFDVN-DESTYNH-----IAAQKALISIKRFIRPQQYAIRDLIE 199 (252)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHTCCTT-CGGGCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4564 8899999985 5555788888877 4333222 12234577888888888877766643
No 19
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=39.91 E-value=42 Score=21.93 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=14.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHH
Q 013820 405 LEEHVFAFWLTTAGIIVGAVMAFLPHV 431 (436)
Q Consensus 405 ~Ee~~~gF~~v~~~mv~~~v~~~~~~~ 431 (436)
+|+++-|-+.++.+..+..++.|+.+|
T Consensus 1 ~E~~l~GTl~~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 1 MEEKPKGALAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccceehHHHHHHHHHHHHHHHHH
Confidence 367788877766655544444444443
No 20
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=39.44 E-value=32 Score=21.35 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013820 263 RISKQTLVELSSRAGALRQMLLDL 286 (436)
Q Consensus 263 ~~LKr~L~~l~~~v~~vre~L~~L 286 (436)
..+|++|.+++..+..+-+-++++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467889999998888877777665
No 21
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=38.53 E-value=76 Score=28.45 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013820 264 ISKQTLVELSSRAGALRQMLLD 285 (436)
Q Consensus 264 ~LKr~L~~l~~~v~~vre~L~~ 285 (436)
.++..+..++..+.|+.+.+..
T Consensus 70 ~l~~~~~~l~~qL~P~~~e~~~ 91 (191)
T 1nfn_A 70 ELKAYKSELEEQLTPVAEETRA 91 (191)
T ss_dssp HHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHhcchhHHHHHH
Confidence 3333444556666666544433
No 22
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=38.05 E-value=70 Score=24.55 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013820 227 SRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQM 282 (436)
Q Consensus 227 ~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre~ 282 (436)
.-+..|+..++.|..+...++.+.+.. =..||+++..+...+.+.++.
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ss--------Q~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESM--------QQKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccCCC
Confidence 334555555555555554444443311 256889999999998885543
No 23
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=35.60 E-value=2.3e+02 Score=24.88 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013820 265 SKQTLVELSSRAGALRQMLLD 285 (436)
Q Consensus 265 LKr~L~~l~~~v~~vre~L~~ 285 (436)
+.+.+-.++.++.|+-+.+..
T Consensus 109 ~~~~~e~lr~~l~Py~~el~~ 129 (185)
T 3r2p_A 109 WQEEMELYRQKVEPLRAELQE 129 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 345555666666666555543
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.83 E-value=2.8e+02 Score=28.87 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013820 349 ERLLDSAKEMEDSIAVNL 366 (436)
Q Consensus 349 e~L~e~i~~ted~i~i~L 366 (436)
+.++..|.-+|-=|.+++
T Consensus 141 edq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 141 RAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333443344444
No 25
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=34.81 E-value=2.7e+02 Score=25.56 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhccccccccCCCCCCCcCcchh-hhhhhhhHHHHHHHHHHHHHHH-
Q 013820 264 ISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLE-KQIAEEEEEEIEMLLENYLQRC- 341 (436)
Q Consensus 264 ~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~-~~~~~~~~eevE~LLE~Y~r~v- 341 (436)
.+.+.+-.++.++.|+-+.+..=++.+-+ . +..+ +.. +..+ +.......+++...+++|..++
T Consensus 107 ~~~~~~eelr~~L~P~~eel~~~~~~~~e--e--l~~~---L~p--------~~eelr~kl~~~veelk~~l~P~~ee~r 171 (243)
T 2a01_A 107 KWQEEMELYRQKVEPLRAELQEGARQKLH--E--LQEK---LSP--------LGEEMRDRARAHVDALRTHLAPYSDELR 171 (243)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHH--H--HCCS---CCS--------STHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhHH--H--HHHH---HHh--------HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34567778888888887777555433221 1 1100 000 0000 1122456677777777877666
Q ss_pred HHHHhHHHHHHH
Q 013820 342 ESCHGQSERLLD 353 (436)
Q Consensus 342 d~i~~~le~L~e 353 (436)
..+.+.++.+++
T Consensus 172 ~kl~~~~~el~~ 183 (243)
T 2a01_A 172 QRLAARLEALKE 183 (243)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555555
No 26
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=32.81 E-value=3.2e+02 Score=25.75 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHhHHHHHHHHH
Q 013820 324 EEEEEEIEMLLENYLQRC-ESCHGQSERLLDSA 355 (436)
Q Consensus 324 ~~~~eevE~LLE~Y~r~v-d~i~~~le~L~e~i 355 (436)
..+.+++...+.+|..++ ..+.+.++.+++.+
T Consensus 109 ~~~veelk~~L~Py~eelr~k~~~~leeLr~~l 141 (273)
T 3s84_A 109 DQNVEELKGRLTPYADEFKVKIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh
Confidence 445677777788887766 55566666666554
No 27
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=27.75 E-value=2.4e+02 Score=24.70 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 013820 265 SKQTLVELSSRAGALRQMLLDLLE 288 (436)
Q Consensus 265 LKr~L~~l~~~v~~vre~L~~LL~ 288 (436)
+.+.+-.++.++.|..+.+...+.
T Consensus 87 l~kdlee~r~~l~P~~~e~~~~~~ 110 (185)
T 3r2p_A 87 MSKDLEEVKAKVQPYLDDFQKKWQ 110 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777766665543
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.82 E-value=5.2e+02 Score=26.29 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=7.3
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 013820 342 ESCHGQSERLLDSAKEMED 360 (436)
Q Consensus 342 d~i~~~le~L~e~i~~ted 360 (436)
.++.+..+.++..+..+++
T Consensus 561 ~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 561 AELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344443433333
No 29
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.46 E-value=2.2e+02 Score=21.15 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013820 259 LEQLRISKQTLVELSSRAGALRQMLLDL 286 (436)
Q Consensus 259 L~~L~~LKr~L~~l~~~v~~vre~L~~L 286 (436)
-+.+...|.++..+++.++.+.-.|+.+
T Consensus 48 ~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 48 NDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457788899999999999888877654
No 30
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.60 E-value=2.9e+02 Score=22.17 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 013820 214 MPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGL 246 (436)
Q Consensus 214 LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ 246 (436)
|..-|.-|...++.+-..++.+++.++.++..+
T Consensus 34 Ls~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 34 MATTFARLCQQVDMTQKHLEEEIARLSKEIDQL 66 (96)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566899999999999999999999877544
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.29 E-value=6.8e+02 Score=26.07 Aligned_cols=8 Identities=13% Similarity=0.439 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013820 233 EQRLMHIE 240 (436)
Q Consensus 233 e~~l~~Le 240 (436)
...+++|.
T Consensus 63 tkrINELK 70 (562)
T 3ghg_A 63 TNRINKLK 70 (562)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 32
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=21.83 E-value=2.1e+02 Score=25.82 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013820 224 ALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLE 288 (436)
Q Consensus 224 iLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~ 288 (436)
....+...+...++.+..++..-++++...+.+-.-+-=-.+.+.+-.++.++.|.-+.+..=++
T Consensus 66 ~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py~~el~~~~~~~~e~lr~~L~Py~~el~~~~~ 130 (216)
T 2lem_A 66 LTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKEDVELYRQKASPQGAELQESAR 130 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544555544433321111123466777788888888777765444
No 33
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=21.68 E-value=1.7e+02 Score=25.63 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 013820 328 EEIEMLLENYL 338 (436)
Q Consensus 328 eevE~LLE~Y~ 338 (436)
+++..-++.|.
T Consensus 109 EelR~~l~p~~ 119 (165)
T 1gs9_A 109 EDVRGRLVQYR 119 (165)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 34
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=20.38 E-value=3.2e+02 Score=21.58 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhccC-----ccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013820 226 LSRVQRLEQRLMHIEPRVQGLLEVLPN-----RLTADILE-QLRISKQTLVELSSRAGALRQMLLDLLED 289 (436)
Q Consensus 226 d~v~~~Le~~l~~Le~~v~~~ld~L~~-----~v~~~~L~-~L~~LKr~L~~l~~~v~~vre~L~~LL~d 289 (436)
...+..++.++......++.++..|.. ..+...|. -|..+=...+.|-.+++.+.+.++.+.+.
T Consensus 11 ~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~ 80 (93)
T 3t98_B 11 RVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666555543 23344443 35555567788888888888888877553
No 35
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=20.25 E-value=2.6e+02 Score=25.56 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=44.8
Q ss_pred CCCCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhhccCccch-hHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013820 210 GSPCMPFMIEAVEAALLSRV---QRLEQRLMHIEPRVQGLLEVLPNRLTA-DIL-EQLRISKQTLVELSSRAGALRQ 281 (436)
Q Consensus 210 ~~~~LpfE~~aLEaiLd~v~---~~Le~~l~~Le~~v~~~ld~L~~~v~~-~~L-~~L~~LKr~L~~l~~~v~~vre 281 (436)
+.+++.|. +|+++++.+. +.++++++++|+.+..- -.+.... -.+ ..+..+|+.+..++..+..+..
T Consensus 169 ~~~~ll~~--lld~ivd~y~~~l~~i~~~id~lE~~l~~~---~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 240 (266)
T 2hn1_A 169 AGDYLAYT--ILDAVVDSYFEALLKISDEIEVLEDEVVSG---DSTLIGKIHSLKREILAFRNAVWPLRDVLSFFTR 240 (266)
T ss_dssp CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667786 8999999985 56667888888876321 1122221 123 3488889998888888877764
Done!