Query 013821
Match_columns 436
No_of_seqs 617 out of 4075
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:43:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 7E-33 1.5E-37 269.4 22.2 247 181-430 236-494 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.2E-30 2.7E-35 253.8 19.4 250 178-430 199-460 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 8.6E-24 1.9E-28 222.7 30.0 247 178-426 309-576 (615)
4 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-23 4.9E-28 219.6 30.5 245 177-425 141-500 (615)
5 PRK15174 Vi polysaccharide exp 99.9 1.2E-22 2.5E-27 214.4 32.3 246 178-427 57-319 (656)
6 PRK15174 Vi polysaccharide exp 99.9 3.9E-22 8.6E-27 210.4 31.5 244 178-424 91-384 (656)
7 KOG1126 DNA-binding cell divis 99.9 4.6E-23 9.9E-28 204.0 17.3 208 196-427 419-626 (638)
8 PRK11447 cellulose synthase su 99.9 2.8E-21 6.1E-26 216.6 30.1 246 178-426 366-705 (1157)
9 PRK11447 cellulose synthase su 99.9 4.4E-21 9.6E-26 215.0 30.8 213 177-393 283-530 (1157)
10 KOG0547 Translocase of outer m 99.9 1E-21 2.3E-26 187.6 20.8 222 201-423 329-568 (606)
11 TIGR02917 PEP_TPR_lipo putativ 99.9 1.9E-20 4.1E-25 204.4 32.1 243 180-426 550-804 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 2.3E-20 5E-25 203.8 32.0 243 178-424 582-835 (899)
13 PRK09782 bacteriophage N4 rece 99.9 4.1E-20 8.9E-25 200.0 31.9 241 182-428 460-713 (987)
14 PRK11788 tetratricopeptide rep 99.9 4.9E-20 1.1E-24 183.6 30.1 247 178-428 50-318 (389)
15 PRK11788 tetratricopeptide rep 99.9 4.7E-20 1E-24 183.7 29.6 232 200-433 37-290 (389)
16 TIGR02521 type_IV_pilW type IV 99.9 8.4E-20 1.8E-24 167.0 27.6 202 198-423 31-234 (234)
17 KOG1126 DNA-binding cell divis 99.9 3.2E-21 7E-26 191.0 17.4 222 181-427 337-592 (638)
18 PRK12370 invasion protein regu 99.9 6.5E-20 1.4E-24 190.4 25.0 189 212-424 275-473 (553)
19 PRK12370 invasion protein regu 99.9 1.1E-19 2.3E-24 188.9 26.3 215 180-421 278-502 (553)
20 COG3063 PilF Tfp pilus assembl 99.9 2.6E-19 5.5E-24 157.0 23.5 207 198-428 35-243 (250)
21 PRK11189 lipoprotein NlpI; Pro 99.9 3.5E-19 7.7E-24 170.5 26.3 215 184-427 47-272 (296)
22 KOG1155 Anaphase-promoting com 99.9 8.9E-20 1.9E-24 173.5 21.6 207 200-430 332-545 (559)
23 PRK09782 bacteriophage N4 rece 99.8 2.5E-19 5.4E-24 194.0 26.4 243 178-426 491-745 (987)
24 KOG1125 TPR repeat-containing 99.8 9.5E-20 2.1E-24 178.0 18.8 221 201-424 288-530 (579)
25 KOG0547 Translocase of outer m 99.8 1.3E-18 2.8E-23 166.6 21.9 221 176-399 339-578 (606)
26 PRK10049 pgaA outer membrane p 99.8 1.5E-17 3.3E-22 179.0 32.7 246 178-427 64-428 (765)
27 KOG2076 RNA polymerase III tra 99.8 4.5E-18 9.8E-23 173.5 26.7 219 199-419 140-510 (895)
28 KOG1173 Anaphase-promoting com 99.8 1.9E-18 4.1E-23 168.3 21.7 211 196-430 310-527 (611)
29 KOG1155 Anaphase-promoting com 99.8 4.3E-18 9.4E-23 162.2 22.0 195 203-421 267-495 (559)
30 KOG0548 Molecular co-chaperone 99.8 9.6E-18 2.1E-22 162.8 24.1 249 178-430 17-464 (539)
31 PLN02789 farnesyltranstransfer 99.8 1.1E-17 2.5E-22 160.3 24.5 215 199-435 38-265 (320)
32 KOG1129 TPR repeat-containing 99.8 2.9E-18 6.4E-23 156.8 17.6 224 202-428 227-465 (478)
33 PF13429 TPR_15: Tetratricopep 99.8 3.1E-19 6.7E-24 169.9 10.7 240 177-420 22-276 (280)
34 PF13429 TPR_15: Tetratricopep 99.8 1.5E-18 3.2E-23 165.3 14.7 205 178-387 59-277 (280)
35 COG3063 PilF Tfp pilus assembl 99.8 1.9E-17 4.1E-22 145.3 19.7 167 233-423 36-204 (250)
36 TIGR02521 type_IV_pilW type IV 99.8 1.1E-16 2.3E-21 146.3 24.8 173 231-427 30-204 (234)
37 PRK10747 putative protoheme IX 99.8 5.6E-16 1.2E-20 154.6 29.3 215 205-422 125-391 (398)
38 KOG0624 dsRNA-activated protei 99.8 5.2E-17 1.1E-21 149.6 19.5 232 197-430 105-379 (504)
39 KOG2002 TPR-containing nuclear 99.8 1.3E-16 2.9E-21 163.8 24.6 246 181-428 148-416 (1018)
40 KOG1125 TPR repeat-containing 99.8 3.3E-17 7.1E-22 160.4 18.7 211 179-414 301-564 (579)
41 PLN02789 farnesyltranstransfer 99.8 2E-16 4.3E-21 151.8 23.8 229 178-424 52-305 (320)
42 TIGR00540 hemY_coli hemY prote 99.8 9E-16 1.9E-20 153.9 29.2 240 178-421 99-399 (409)
43 KOG2003 TPR repeat-containing 99.7 1.2E-16 2.6E-21 151.7 20.0 223 177-424 470-692 (840)
44 TIGR00540 hemY_coli hemY prote 99.7 9.7E-16 2.1E-20 153.6 27.5 233 200-434 86-379 (409)
45 KOG1173 Anaphase-promoting com 99.7 1.1E-16 2.4E-21 156.1 19.6 202 178-404 327-535 (611)
46 PRK11189 lipoprotein NlpI; Pro 99.7 3.3E-16 7.1E-21 150.0 21.5 206 178-406 79-285 (296)
47 KOG2002 TPR-containing nuclear 99.7 7.2E-16 1.6E-20 158.5 23.4 253 181-436 112-387 (1018)
48 KOG1840 Kinesin light chain [C 99.7 2.6E-15 5.7E-20 150.4 23.7 223 197-421 198-479 (508)
49 KOG0624 dsRNA-activated protei 99.7 2.3E-15 5E-20 138.8 20.4 217 199-427 39-258 (504)
50 PRK14574 hmsH outer membrane p 99.7 1.5E-14 3.3E-19 154.1 29.8 248 178-429 83-487 (822)
51 TIGR03302 OM_YfiO outer membra 99.7 4.8E-15 1E-19 137.3 22.3 179 229-423 30-234 (235)
52 TIGR03302 OM_YfiO outer membra 99.7 8.3E-15 1.8E-19 135.7 22.8 187 197-390 32-235 (235)
53 PRK15359 type III secretion sy 99.7 1.6E-15 3.4E-20 129.3 16.2 126 218-369 13-138 (144)
54 PRK10747 putative protoheme IX 99.7 3.2E-14 6.9E-19 142.0 28.0 227 200-432 86-368 (398)
55 KOG0550 Molecular chaperone (D 99.7 3.7E-16 7.9E-21 147.3 13.0 252 169-424 56-353 (486)
56 KOG0495 HAT repeat protein [RN 99.7 9.9E-15 2.1E-19 144.3 23.1 244 177-428 632-887 (913)
57 KOG1174 Anaphase-promoting com 99.7 1.2E-14 2.5E-19 137.1 22.4 232 196-430 230-509 (564)
58 PRK10049 pgaA outer membrane p 99.7 2.7E-14 5.8E-19 154.0 27.7 146 177-325 29-174 (765)
59 PRK15359 type III secretion sy 99.7 2.4E-15 5.3E-20 128.1 15.0 127 252-405 13-139 (144)
60 COG2956 Predicted N-acetylgluc 99.6 4.7E-14 1E-18 129.4 22.5 227 178-425 50-282 (389)
61 cd05804 StaR_like StaR_like; a 99.6 4.9E-14 1.1E-18 138.7 23.8 204 196-423 4-217 (355)
62 KOG1129 TPR repeat-containing 99.6 2.4E-15 5.3E-20 137.8 12.6 220 178-401 238-472 (478)
63 KOG4162 Predicted calmodulin-b 99.6 9.2E-14 2E-18 140.2 23.9 210 214-425 460-787 (799)
64 KOG1174 Anaphase-promoting com 99.6 4.8E-14 1E-18 133.0 20.4 215 212-427 212-473 (564)
65 PRK10370 formate-dependent nit 99.6 4.4E-14 9.6E-19 126.9 18.3 124 245-392 52-178 (198)
66 PRK10370 formate-dependent nit 99.6 9.2E-14 2E-18 124.8 19.4 121 282-424 54-176 (198)
67 PRK14574 hmsH outer membrane p 99.6 2.9E-13 6.3E-18 144.4 25.7 197 196-417 32-228 (822)
68 KOG0548 Molecular co-chaperone 99.6 2.6E-13 5.6E-18 132.3 22.6 109 202-311 6-114 (539)
69 KOG0495 HAT repeat protein [RN 99.6 8.7E-13 1.9E-17 130.8 26.1 242 183-426 501-753 (913)
70 PRK15179 Vi polysaccharide bio 99.6 1.5E-13 3.3E-18 144.1 22.2 158 215-396 69-226 (694)
71 KOG1840 Kinesin light chain [C 99.6 2.1E-13 4.5E-18 136.8 22.1 193 228-422 195-439 (508)
72 KOG2076 RNA polymerase III tra 99.6 7.2E-13 1.6E-17 135.9 25.2 237 177-416 153-550 (895)
73 COG5010 TadD Flp pilus assembl 99.6 3.9E-13 8.5E-18 120.7 19.9 179 214-417 49-227 (257)
74 PRK15179 Vi polysaccharide bio 99.6 4.9E-13 1.1E-17 140.2 23.4 143 256-422 76-218 (694)
75 COG2956 Predicted N-acetylgluc 99.6 6.4E-12 1.4E-16 115.6 26.8 227 176-427 63-317 (389)
76 PRK14720 transcript cleavage f 99.6 4.4E-13 9.4E-18 141.7 22.0 220 191-421 25-283 (906)
77 KOG0550 Molecular chaperone (D 99.5 9.4E-14 2E-18 131.2 13.7 231 202-434 53-330 (486)
78 KOG2003 TPR repeat-containing 99.5 1.2E-12 2.6E-17 124.9 20.5 205 178-407 505-709 (840)
79 KOG3060 Uncharacterized conser 99.5 3.1E-12 6.7E-17 114.0 21.1 177 202-401 56-234 (289)
80 COG4783 Putative Zn-dependent 99.5 1.2E-12 2.6E-17 126.7 19.9 158 229-427 303-461 (484)
81 TIGR02552 LcrH_SycD type III s 99.5 7.5E-13 1.6E-17 111.4 16.3 117 219-358 4-120 (135)
82 TIGR02552 LcrH_SycD type III s 99.5 1.2E-12 2.5E-17 110.2 15.6 117 253-393 4-120 (135)
83 KOG1127 TPR repeat-containing 99.5 2.4E-13 5.2E-18 140.1 13.2 245 178-426 473-884 (1238)
84 COG5010 TadD Flp pilus assembl 99.5 3.2E-12 6.9E-17 114.9 18.1 173 186-384 56-228 (257)
85 COG3071 HemY Uncharacterized e 99.5 7.6E-11 1.6E-15 111.6 27.4 214 205-421 91-390 (400)
86 PLN03218 maturation of RBCL 1; 99.5 7.5E-11 1.6E-15 129.4 30.6 218 198-420 507-747 (1060)
87 PLN03218 maturation of RBCL 1; 99.5 1.1E-10 2.3E-15 128.2 31.3 222 197-421 471-713 (1060)
88 KOG1156 N-terminal acetyltrans 99.4 2.6E-11 5.5E-16 120.7 22.8 230 197-428 40-290 (700)
89 PLN03081 pentatricopeptide (PP 99.4 1.7E-11 3.7E-16 131.4 23.1 236 178-424 274-526 (697)
90 KOG0553 TPR repeat-containing 99.4 1.5E-12 3.2E-17 119.2 12.5 116 199-315 82-197 (304)
91 PLN03081 pentatricopeptide (PP 99.4 1.9E-11 4.1E-16 131.1 23.2 213 199-417 260-487 (697)
92 KOG0553 TPR repeat-containing 99.4 3.1E-12 6.7E-17 117.1 14.0 129 233-385 82-213 (304)
93 KOG1128 Uncharacterized conser 99.4 2.2E-12 4.8E-17 129.7 13.8 198 199-427 425-622 (777)
94 cd05804 StaR_like StaR_like; a 99.4 1.9E-11 4.2E-16 120.2 20.1 176 228-424 2-180 (355)
95 KOG1127 TPR repeat-containing 99.4 2E-11 4.4E-16 126.1 20.1 220 201-422 402-660 (1238)
96 COG4783 Putative Zn-dependent 99.4 4.4E-11 9.5E-16 116.0 20.8 156 196-357 304-459 (484)
97 KOG3060 Uncharacterized conser 99.4 1.1E-10 2.4E-15 104.2 21.5 189 212-424 26-223 (289)
98 KOG1156 N-terminal acetyltrans 99.4 5.6E-11 1.2E-15 118.3 21.2 221 205-427 14-254 (700)
99 PF12569 NARP1: NMDA receptor- 99.4 4.6E-10 9.9E-15 114.1 26.8 216 205-421 11-291 (517)
100 PRK15363 pathogenicity island 99.4 1.7E-11 3.6E-16 103.4 13.5 116 292-430 25-144 (157)
101 PRK15363 pathogenicity island 99.3 6.6E-11 1.4E-15 99.8 14.7 102 263-388 32-133 (157)
102 PLN03077 Protein ECB2; Provisi 99.3 4E-10 8.7E-15 123.7 24.9 246 178-435 404-701 (857)
103 PLN03088 SGT1, suppressor of 99.3 5.4E-11 1.2E-15 116.7 16.2 114 201-315 5-118 (356)
104 KOG1130 Predicted G-alpha GTPa 99.3 1.1E-11 2.4E-16 117.1 10.6 241 181-422 35-345 (639)
105 PF12569 NARP1: NMDA receptor- 99.3 6.4E-10 1.4E-14 113.0 23.8 242 178-422 19-335 (517)
106 KOG4162 Predicted calmodulin-b 99.3 4.8E-10 1E-14 113.8 22.2 207 183-392 464-788 (799)
107 PLN03088 SGT1, suppressor of 99.3 9.7E-11 2.1E-15 114.9 16.8 113 235-370 5-117 (356)
108 PRK14720 transcript cleavage f 99.3 3.2E-10 6.9E-15 120.3 20.3 177 227-430 26-261 (906)
109 KOG2376 Signal recognition par 99.3 6.4E-10 1.4E-14 109.8 20.9 214 207-426 21-258 (652)
110 KOG1915 Cell cycle control pro 99.2 2.5E-09 5.5E-14 103.1 23.2 254 176-430 257-545 (677)
111 KOG1130 Predicted G-alpha GTPa 99.2 3.9E-11 8.3E-16 113.6 10.2 216 205-422 24-305 (639)
112 COG4235 Cytochrome c biogenesi 99.2 5.4E-10 1.2E-14 103.2 16.3 125 212-358 136-262 (287)
113 PLN03077 Protein ECB2; Provisi 99.2 3.8E-09 8.2E-14 116.1 25.2 231 178-421 439-720 (857)
114 PRK10866 outer membrane biogen 99.2 7.4E-09 1.6E-13 96.0 23.0 175 197-380 31-234 (243)
115 KOG1128 Uncharacterized conser 99.2 5.2E-10 1.1E-14 112.9 16.2 181 202-422 402-583 (777)
116 PF13525 YfiO: Outer membrane 99.2 4.8E-09 1E-13 94.8 20.5 170 197-375 4-195 (203)
117 CHL00033 ycf3 photosystem I as 99.2 1.2E-09 2.7E-14 95.6 15.8 129 212-356 13-153 (168)
118 KOG3785 Uncharacterized conser 99.2 5E-09 1.1E-13 97.8 19.6 152 178-330 37-214 (557)
119 PRK11906 transcriptional regul 99.2 4.1E-09 9E-14 103.0 19.8 161 236-419 259-434 (458)
120 COG4785 NlpI Lipoprotein NlpI, 99.1 3.5E-09 7.7E-14 92.6 17.2 195 181-421 64-266 (297)
121 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.6E-09 3.4E-14 88.5 14.6 106 199-305 3-114 (119)
122 PRK04841 transcriptional regul 99.1 1.5E-08 3.3E-13 112.1 26.2 245 178-424 467-763 (903)
123 KOG3785 Uncharacterized conser 99.1 1.3E-08 2.8E-13 95.1 21.2 202 210-417 34-244 (557)
124 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.4E-09 5.2E-14 87.4 14.9 103 233-358 3-111 (119)
125 PRK10153 DNA-binding transcrip 99.1 4.5E-09 9.7E-14 107.5 19.6 144 226-393 331-488 (517)
126 COG4235 Cytochrome c biogenesi 99.1 2.9E-09 6.4E-14 98.3 16.1 124 248-392 138-261 (287)
127 PRK02603 photosystem I assembl 99.1 4.3E-09 9.3E-14 92.6 16.5 85 230-315 33-120 (172)
128 PF04733 Coatomer_E: Coatomer 99.1 4.6E-10 1E-14 106.6 10.9 189 212-429 80-273 (290)
129 cd00189 TPR Tetratricopeptide 99.1 1.1E-09 2.4E-14 84.1 11.3 99 200-299 2-100 (100)
130 PRK11906 transcriptional regul 99.1 4.5E-09 9.8E-14 102.7 17.5 161 202-386 259-435 (458)
131 PF13525 YfiO: Outer membrane 99.1 1.8E-08 3.8E-13 91.1 20.3 166 231-412 4-198 (203)
132 cd00189 TPR Tetratricopeptide 99.1 2.1E-09 4.5E-14 82.6 11.9 93 331-424 8-100 (100)
133 COG0457 NrfG FOG: TPR repeat [ 99.1 1.1E-07 2.4E-12 85.0 25.0 203 198-424 59-268 (291)
134 KOG1915 Cell cycle control pro 99.1 3.7E-08 7.9E-13 95.2 22.2 54 368-422 448-501 (677)
135 PF13414 TPR_11: TPR repeat; P 99.1 7.8E-10 1.7E-14 81.4 8.6 68 231-298 2-69 (69)
136 PRK10866 outer membrane biogen 99.1 6.1E-08 1.3E-12 89.9 23.2 181 230-417 30-237 (243)
137 CHL00033 ycf3 photosystem I as 99.1 5.6E-09 1.2E-13 91.4 15.2 120 248-391 15-153 (168)
138 PF13414 TPR_11: TPR repeat; P 99.1 7.9E-10 1.7E-14 81.4 8.2 68 355-423 1-69 (69)
139 PF14938 SNAP: Soluble NSF att 99.0 1.2E-08 2.6E-13 97.1 18.0 185 213-430 30-234 (282)
140 KOG4340 Uncharacterized conser 99.0 9.5E-09 2.1E-13 93.9 16.0 205 209-415 21-264 (459)
141 PF04733 Coatomer_E: Coatomer 99.0 2E-09 4.3E-14 102.3 12.2 169 199-394 103-272 (290)
142 PRK02603 photosystem I assembl 99.0 1.8E-08 3.9E-13 88.6 16.1 97 264-384 33-132 (172)
143 PRK10153 DNA-binding transcrip 99.0 1.8E-08 4E-13 103.0 18.3 152 260-427 331-488 (517)
144 KOG4648 Uncharacterized conser 99.0 2.9E-10 6.2E-15 105.5 4.3 223 202-427 101-336 (536)
145 PF12895 Apc3: Anaphase-promot 99.0 1.4E-09 3.1E-14 83.5 7.0 82 335-418 1-84 (84)
146 PF09976 TPR_21: Tetratricopep 99.0 3.7E-08 8.1E-13 84.0 16.5 114 282-419 26-145 (145)
147 KOG0543 FKBP-type peptidyl-pro 99.0 1.2E-08 2.7E-13 97.4 14.3 111 200-311 210-335 (397)
148 KOG0543 FKBP-type peptidyl-pro 99.0 2.1E-08 4.6E-13 95.9 15.7 146 233-421 209-355 (397)
149 PF12895 Apc3: Anaphase-promot 99.0 1.7E-09 3.7E-14 83.1 6.9 81 211-293 2-84 (84)
150 PF13432 TPR_16: Tetratricopep 99.0 2E-09 4.2E-14 78.3 6.8 62 204-265 3-64 (65)
151 KOG4340 Uncharacterized conser 99.0 3.5E-08 7.6E-13 90.3 15.9 183 242-430 20-220 (459)
152 PF09976 TPR_21: Tetratricopep 98.9 4E-08 8.7E-13 83.8 15.6 117 210-350 23-145 (145)
153 KOG2376 Signal recognition par 98.9 4.6E-07 1E-11 90.0 24.6 92 338-430 356-496 (652)
154 COG3071 HemY Uncharacterized e 98.9 5.8E-07 1.3E-11 85.6 23.5 205 177-387 132-390 (400)
155 PF13432 TPR_16: Tetratricopep 98.9 6E-09 1.3E-13 75.7 7.3 65 236-301 1-65 (65)
156 PF14938 SNAP: Soluble NSF att 98.9 3E-08 6.4E-13 94.4 13.5 200 199-422 36-267 (282)
157 PRK15331 chaperone protein Sic 98.9 2.4E-08 5.1E-13 84.8 11.2 100 331-432 45-144 (165)
158 KOG1070 rRNA processing protei 98.9 7.8E-07 1.7E-11 95.8 24.7 202 196-422 1456-1664(1710)
159 PRK04841 transcriptional regul 98.9 7.9E-07 1.7E-11 98.5 26.2 220 201-422 455-721 (903)
160 PRK10803 tol-pal system protei 98.9 1.6E-07 3.5E-12 87.8 17.1 61 331-392 188-251 (263)
161 PRK10803 tol-pal system protei 98.8 9.5E-08 2.1E-12 89.3 15.5 97 333-430 153-255 (263)
162 COG0457 NrfG FOG: TPR repeat [ 98.8 1.9E-06 4E-11 76.9 23.7 190 211-424 36-234 (291)
163 COG4105 ComL DNA uptake lipopr 98.8 1.4E-06 3E-11 79.1 22.1 184 199-392 35-238 (254)
164 PRK15331 chaperone protein Sic 98.8 8.5E-08 1.9E-12 81.4 13.1 97 232-351 37-133 (165)
165 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 2.2E-07 4.7E-12 91.4 16.5 117 239-382 176-292 (395)
166 COG4700 Uncharacterized protei 98.8 1E-06 2.2E-11 75.6 18.2 153 207-385 65-220 (251)
167 PF14559 TPR_19: Tetratricopep 98.8 1.7E-08 3.7E-13 74.0 6.6 66 209-274 2-67 (68)
168 PF12688 TPR_5: Tetratrico pep 98.7 2.9E-07 6.3E-12 75.2 13.1 54 331-385 46-102 (120)
169 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.5E-07 7.6E-12 89.9 16.1 116 206-347 177-292 (395)
170 PF14559 TPR_19: Tetratricopep 98.7 3.3E-08 7.3E-13 72.4 6.9 67 334-401 2-68 (68)
171 KOG2047 mRNA splicing factor [ 98.7 3.9E-06 8.4E-11 84.3 22.3 47 181-227 231-277 (835)
172 KOG1941 Acetylcholine receptor 98.7 1.5E-06 3.3E-11 81.7 18.1 221 199-421 84-360 (518)
173 PF13371 TPR_9: Tetratricopept 98.7 1E-07 2.2E-12 70.9 8.6 68 206-273 3-70 (73)
174 PF12688 TPR_5: Tetratrico pep 98.7 4.9E-07 1.1E-11 73.8 13.2 90 331-421 9-104 (120)
175 KOG4234 TPR repeat-containing 98.7 2.8E-07 6.1E-12 79.9 11.8 108 200-308 97-209 (271)
176 KOG4648 Uncharacterized conser 98.7 5.4E-08 1.2E-12 90.6 7.5 109 235-366 100-208 (536)
177 KOG4234 TPR repeat-containing 98.7 2.2E-07 4.8E-12 80.5 10.3 99 331-430 103-206 (271)
178 COG4700 Uncharacterized protei 98.7 5.4E-06 1.2E-10 71.2 18.6 161 240-426 64-231 (251)
179 PF13371 TPR_9: Tetratricopept 98.6 2.8E-07 6.1E-12 68.4 9.1 68 331-399 3-70 (73)
180 KOG2053 Mitochondrial inherita 98.6 2E-05 4.3E-10 82.1 23.7 112 212-325 23-134 (932)
181 PF06552 TOM20_plant: Plant sp 98.6 8.2E-07 1.8E-11 76.2 11.3 106 283-400 7-122 (186)
182 COG4785 NlpI Lipoprotein NlpI, 98.6 3.1E-06 6.7E-11 74.4 15.0 175 184-389 86-268 (297)
183 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 3.4E-07 7.3E-12 89.7 9.2 73 352-425 70-146 (453)
184 KOG1070 rRNA processing protei 98.5 2E-05 4.3E-10 85.4 22.2 197 199-420 1498-1699(1710)
185 COG3898 Uncharacterized membra 98.5 0.00011 2.4E-09 70.2 24.5 215 206-422 162-393 (531)
186 COG1729 Uncharacterized protei 98.5 4.1E-06 8.8E-11 76.8 14.4 107 201-308 144-256 (262)
187 KOG3081 Vesicle coat complex C 98.5 2.9E-05 6.4E-10 70.5 19.4 159 205-392 115-276 (299)
188 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 9.3E-07 2E-11 86.7 10.5 70 296-388 70-142 (453)
189 KOG4555 TPR repeat-containing 98.5 3.9E-06 8.3E-11 67.9 12.2 96 331-427 51-150 (175)
190 KOG3081 Vesicle coat complex C 98.5 8.2E-05 1.8E-09 67.7 21.9 201 200-427 74-277 (299)
191 COG4105 ComL DNA uptake lipopr 98.5 7.1E-05 1.5E-09 68.2 21.7 178 231-425 33-237 (254)
192 PF06552 TOM20_plant: Plant sp 98.5 2.6E-06 5.7E-11 73.1 11.8 73 283-366 51-123 (186)
193 KOG1941 Acetylcholine receptor 98.5 1.1E-05 2.4E-10 76.0 16.7 198 201-422 46-276 (518)
194 KOG2047 mRNA splicing factor [ 98.5 2.4E-05 5.1E-10 78.8 19.8 198 199-419 388-613 (835)
195 PF13512 TPR_18: Tetratricopep 98.4 6.9E-06 1.5E-10 68.4 13.6 106 198-303 10-135 (142)
196 PF05843 Suf: Suppressor of fo 98.4 7.8E-06 1.7E-10 77.6 15.6 134 234-390 3-139 (280)
197 COG1729 Uncharacterized protei 98.4 1E-05 2.2E-10 74.3 14.9 104 235-361 144-253 (262)
198 KOG1586 Protein required for f 98.4 6.7E-05 1.4E-09 66.9 19.3 181 211-430 27-233 (288)
199 PF05843 Suf: Suppressor of fo 98.4 1.3E-05 2.8E-10 76.1 15.2 137 267-427 2-142 (280)
200 PF13512 TPR_18: Tetratricopep 98.3 2E-05 4.3E-10 65.7 14.0 99 331-430 18-137 (142)
201 PF04184 ST7: ST7 protein; In 98.3 3.2E-05 7E-10 76.1 17.6 113 209-324 179-318 (539)
202 PF13424 TPR_12: Tetratricopep 98.3 9.7E-07 2.1E-11 66.5 4.6 67 354-421 2-75 (78)
203 PF13424 TPR_12: Tetratricopep 98.3 1.2E-06 2.7E-11 65.9 4.9 64 232-296 5-75 (78)
204 KOG4555 TPR repeat-containing 98.2 6.5E-05 1.4E-09 60.9 13.8 94 202-296 47-144 (175)
205 KOG4642 Chaperone-dependent E3 98.2 5.8E-06 1.2E-10 73.8 7.8 93 204-297 16-108 (284)
206 KOG2796 Uncharacterized conser 98.2 0.00032 6.9E-09 63.8 18.6 144 234-401 179-332 (366)
207 KOG4642 Chaperone-dependent E3 98.1 8.1E-06 1.8E-10 72.8 7.9 91 331-422 18-108 (284)
208 KOG2610 Uncharacterized conser 98.1 0.00012 2.5E-09 68.7 15.7 158 238-419 109-274 (491)
209 PF04184 ST7: ST7 protein; In 98.1 0.00022 4.8E-09 70.4 18.4 179 244-426 180-380 (539)
210 KOG2796 Uncharacterized conser 98.1 9.2E-05 2E-09 67.2 14.1 152 245-426 162-320 (366)
211 PF13428 TPR_14: Tetratricopep 98.1 9.4E-06 2E-10 53.8 5.4 41 233-273 2-42 (44)
212 KOG0376 Serine-threonine phosp 98.1 6.8E-06 1.5E-10 80.4 6.5 107 203-310 9-115 (476)
213 KOG3617 WD40 and TPR repeat-co 98.0 0.00033 7.1E-09 72.6 17.9 167 202-385 804-994 (1416)
214 KOG3617 WD40 and TPR repeat-co 98.0 0.0014 3E-08 68.2 22.2 217 199-418 859-1171(1416)
215 KOG1585 Protein required for f 98.0 0.0011 2.4E-08 59.7 19.0 193 200-415 33-250 (308)
216 KOG2471 TPR repeat-containing 98.0 0.00061 1.3E-08 66.9 18.4 81 199-279 284-382 (696)
217 KOG4507 Uncharacterized conser 98.0 0.00021 4.5E-09 71.5 15.3 96 331-427 615-711 (886)
218 KOG0545 Aryl-hydrocarbon recep 98.0 5.5E-05 1.2E-09 67.9 10.0 104 199-303 179-300 (329)
219 PF13428 TPR_14: Tetratricopep 98.0 1.7E-05 3.6E-10 52.6 5.3 43 357-400 1-43 (44)
220 KOG1586 Protein required for f 97.9 0.0027 5.8E-08 56.9 19.3 169 205-392 41-229 (288)
221 KOG1258 mRNA processing protei 97.9 0.0079 1.7E-07 60.9 25.0 231 197-429 78-403 (577)
222 PF13431 TPR_17: Tetratricopep 97.9 1.5E-05 3.1E-10 49.6 3.4 33 220-252 1-33 (34)
223 COG3898 Uncharacterized membra 97.9 0.012 2.7E-07 56.5 24.2 184 203-389 89-294 (531)
224 PF13281 DUF4071: Domain of un 97.9 0.0018 3.9E-08 63.1 19.2 181 232-427 141-340 (374)
225 PF13431 TPR_17: Tetratricopep 97.8 1.9E-05 4.1E-10 49.1 3.3 31 381-411 2-32 (34)
226 KOG0545 Aryl-hydrocarbon recep 97.8 0.0002 4.3E-09 64.3 10.9 98 331-429 186-301 (329)
227 KOG0376 Serine-threonine phosp 97.8 3.5E-05 7.7E-10 75.5 6.3 97 282-401 19-115 (476)
228 KOG0530 Protein farnesyltransf 97.8 0.0092 2E-07 54.4 20.9 215 207-423 52-300 (318)
229 PF13281 DUF4071: Domain of un 97.8 0.0043 9.2E-08 60.5 20.3 181 198-392 141-339 (374)
230 KOG1550 Extracellular protein 97.8 0.0058 1.3E-07 63.8 22.7 242 178-430 264-547 (552)
231 COG3118 Thioredoxin domain-con 97.8 0.0017 3.6E-08 60.4 16.2 53 206-258 142-194 (304)
232 COG0790 FOG: TPR repeat, SEL1 97.8 0.013 2.9E-07 55.8 23.4 191 208-422 51-267 (292)
233 PF10300 DUF3808: Protein of u 97.7 0.004 8.6E-08 63.6 20.4 164 236-422 192-377 (468)
234 PF08424 NRDE-2: NRDE-2, neces 97.7 0.0036 7.9E-08 60.6 18.7 162 219-388 6-184 (321)
235 KOG2610 Uncharacterized conser 97.7 0.00084 1.8E-08 63.1 13.2 143 207-350 112-274 (491)
236 KOG1585 Protein required for f 97.7 0.0035 7.6E-08 56.5 16.6 171 233-422 32-220 (308)
237 COG3118 Thioredoxin domain-con 97.7 0.007 1.5E-07 56.3 18.4 163 232-419 134-299 (304)
238 PF00515 TPR_1: Tetratricopept 97.6 0.0001 2.2E-09 45.6 4.5 32 233-264 2-33 (34)
239 KOG1914 mRNA cleavage and poly 97.6 0.017 3.6E-07 57.9 21.6 206 217-423 264-503 (656)
240 KOG2053 Mitochondrial inherita 97.6 0.0019 4.1E-08 67.8 15.8 130 243-397 20-149 (932)
241 PF07719 TPR_2: Tetratricopept 97.6 0.00017 3.6E-09 44.5 5.2 32 233-264 2-33 (34)
242 KOG0551 Hsp90 co-chaperone CNS 97.6 0.00048 1E-08 64.6 10.0 97 331-428 89-189 (390)
243 PF00515 TPR_1: Tetratricopept 97.6 0.00015 3.2E-09 44.8 4.5 32 358-390 2-33 (34)
244 PF08631 SPO22: Meiosis protei 97.5 0.043 9.3E-07 52.0 23.1 210 209-419 4-273 (278)
245 PF07719 TPR_2: Tetratricopept 97.5 0.00024 5.1E-09 43.8 5.2 33 358-391 2-34 (34)
246 KOG2471 TPR repeat-containing 97.5 0.00087 1.9E-08 65.8 11.2 146 235-404 209-381 (696)
247 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00071 1.5E-08 63.5 10.0 103 198-301 81-187 (390)
248 KOG0530 Protein farnesyltransf 97.4 0.0061 1.3E-07 55.6 14.5 176 212-404 40-233 (318)
249 PF03704 BTAD: Bacterial trans 97.4 0.0053 1.1E-07 52.0 13.8 40 268-308 64-103 (146)
250 KOG1258 mRNA processing protei 97.4 0.039 8.5E-07 56.0 21.3 184 199-405 298-488 (577)
251 COG0790 FOG: TPR repeat, SEL1 97.4 0.047 1E-06 52.0 21.5 154 212-390 91-269 (292)
252 KOG1550 Extracellular protein 97.4 0.02 4.4E-07 59.8 20.0 183 211-420 225-425 (552)
253 PF10300 DUF3808: Protein of u 97.4 0.014 3E-07 59.6 18.1 161 207-387 197-376 (468)
254 PF03704 BTAD: Bacterial trans 97.3 0.0055 1.2E-07 51.9 12.9 63 233-296 63-125 (146)
255 KOG2300 Uncharacterized conser 97.3 0.17 3.8E-06 50.2 24.2 54 212-265 61-122 (629)
256 PF08424 NRDE-2: NRDE-2, neces 97.3 0.035 7.5E-07 53.8 19.1 147 253-422 6-184 (321)
257 PF02259 FAT: FAT domain; Int 97.2 0.022 4.8E-07 55.6 17.9 126 229-370 143-305 (352)
258 PF07079 DUF1347: Protein of u 97.2 0.24 5.2E-06 48.9 24.6 49 367-417 472-520 (549)
259 PF04910 Tcf25: Transcriptiona 97.2 0.015 3.3E-07 57.1 16.0 168 224-424 32-225 (360)
260 KOG1308 Hsp70-interacting prot 97.2 0.0003 6.5E-09 66.2 3.5 92 205-297 121-212 (377)
261 PF02259 FAT: FAT domain; Int 97.2 0.13 2.8E-06 50.2 22.2 157 266-426 146-343 (352)
262 PF09613 HrpB1_HrpK: Bacterial 97.0 0.04 8.6E-07 47.0 14.5 82 199-280 11-92 (160)
263 KOG1308 Hsp70-interacting prot 97.0 0.0005 1.1E-08 64.8 3.3 114 282-419 129-242 (377)
264 PF13181 TPR_8: Tetratricopept 97.0 0.0015 3.2E-08 40.2 4.3 30 234-263 3-32 (34)
265 COG2976 Uncharacterized protei 97.0 0.083 1.8E-06 46.4 16.2 89 331-422 97-189 (207)
266 KOG1914 mRNA cleavage and poly 97.0 0.12 2.5E-06 52.1 19.1 171 250-421 263-464 (656)
267 KOG2300 Uncharacterized conser 96.9 0.13 2.9E-06 51.0 19.1 192 204-415 329-550 (629)
268 KOG2396 HAT (Half-A-TPR) repea 96.9 0.017 3.7E-07 57.3 13.2 97 283-401 87-183 (568)
269 KOG0985 Vesicle coat protein c 96.9 0.095 2.1E-06 56.3 19.3 201 196-412 1102-1374(1666)
270 KOG2396 HAT (Half-A-TPR) repea 96.9 0.018 3.9E-07 57.2 13.2 95 214-308 87-181 (568)
271 PF07079 DUF1347: Protein of u 96.9 0.12 2.6E-06 51.0 18.6 112 268-383 381-520 (549)
272 COG2909 MalT ATP-dependent tra 96.9 0.22 4.9E-06 53.0 21.5 194 205-422 422-648 (894)
273 PF13181 TPR_8: Tetratricopept 96.9 0.0023 4.9E-08 39.3 4.3 31 358-389 2-32 (34)
274 KOG4507 Uncharacterized conser 96.8 0.0058 1.3E-07 61.5 9.2 104 205-309 614-718 (886)
275 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.19 4.2E-06 49.5 18.9 201 219-424 289-534 (660)
276 KOG1464 COP9 signalosome, subu 96.7 0.12 2.5E-06 47.7 16.0 175 212-387 41-260 (440)
277 KOG3783 Uncharacterized conser 96.7 0.47 1E-05 47.9 21.5 208 215-425 250-524 (546)
278 PF04781 DUF627: Protein of un 96.7 0.043 9.3E-07 43.6 11.3 103 238-387 2-107 (111)
279 KOG0985 Vesicle coat protein c 96.6 0.16 3.5E-06 54.7 17.9 61 230-296 1102-1162(1666)
280 PF14561 TPR_20: Tetratricopep 96.6 0.023 5.1E-07 43.8 9.2 77 342-419 7-85 (90)
281 PF10345 Cohesin_load: Cohesin 96.6 1.3 2.8E-05 47.0 27.0 237 177-416 74-428 (608)
282 COG2976 Uncharacterized protei 96.6 0.16 3.5E-06 44.6 15.1 117 250-391 70-192 (207)
283 PF13174 TPR_6: Tetratricopept 96.5 0.0054 1.2E-07 37.2 4.3 31 234-264 2-32 (33)
284 PRK10941 hypothetical protein; 96.5 0.038 8.2E-07 51.8 11.7 69 331-400 189-257 (269)
285 KOG3824 Huntingtin interacting 96.5 0.039 8.5E-07 51.6 11.1 65 243-308 127-191 (472)
286 KOG3824 Huntingtin interacting 96.4 0.0079 1.7E-07 56.1 6.6 67 209-275 127-193 (472)
287 PF13176 TPR_7: Tetratricopept 96.4 0.0069 1.5E-07 37.9 4.3 25 235-259 2-26 (36)
288 PF13174 TPR_6: Tetratricopept 96.2 0.011 2.3E-07 35.8 4.4 31 359-390 2-32 (33)
289 PF13176 TPR_7: Tetratricopept 96.2 0.0069 1.5E-07 37.9 3.5 28 200-227 1-28 (36)
290 KOG3616 Selective LIM binding 96.2 0.2 4.3E-06 52.1 15.3 206 202-420 665-910 (1636)
291 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.036 7.7E-07 38.0 7.0 42 233-274 2-43 (53)
292 TIGR02561 HrpB1_HrpK type III 96.1 0.21 4.6E-06 42.0 12.8 79 202-280 14-92 (153)
293 COG3914 Spy Predicted O-linked 96.1 0.19 4E-06 51.2 14.6 143 212-370 45-189 (620)
294 PRK10941 hypothetical protein; 96.1 0.055 1.2E-06 50.8 10.3 67 204-270 187-253 (269)
295 PF04781 DUF627: Protein of un 96.1 0.062 1.4E-06 42.7 8.9 92 204-296 2-107 (111)
296 KOG2041 WD40 repeat protein [G 96.0 0.34 7.4E-06 50.2 16.1 187 225-418 686-936 (1189)
297 PF14561 TPR_20: Tetratricopep 96.0 0.12 2.5E-06 40.0 10.2 64 217-280 7-72 (90)
298 PF09613 HrpB1_HrpK: Bacterial 96.0 0.14 3.1E-06 43.6 11.6 78 331-409 18-95 (160)
299 PF08631 SPO22: Meiosis protei 96.0 0.33 7.2E-06 46.0 15.5 124 283-421 9-150 (278)
300 COG3914 Spy Predicted O-linked 96.0 0.36 7.8E-06 49.2 16.1 139 245-407 44-191 (620)
301 PF04910 Tcf25: Transcriptiona 96.0 0.27 5.8E-06 48.4 15.2 119 292-433 31-188 (360)
302 PF12968 DUF3856: Domain of Un 96.0 0.13 2.9E-06 41.3 10.3 88 333-421 19-129 (144)
303 PF14853 Fis1_TPR_C: Fis1 C-te 95.8 0.05 1.1E-06 37.3 6.6 42 358-400 2-43 (53)
304 KOG3807 Predicted membrane pro 95.7 1.6 3.6E-05 41.5 18.2 176 210-399 196-403 (556)
305 COG5107 RNA14 Pre-mRNA 3'-end 95.7 0.34 7.3E-06 47.9 14.1 165 252-420 288-494 (660)
306 PF09986 DUF2225: Uncharacteri 95.7 0.11 2.4E-06 47.1 10.3 71 331-402 126-210 (214)
307 COG1747 Uncharacterized N-term 95.7 1.5 3.3E-05 44.1 18.5 178 207-391 75-292 (711)
308 PF10345 Cohesin_load: Cohesin 95.7 3.7 8E-05 43.6 23.3 187 214-420 37-253 (608)
309 COG2909 MalT ATP-dependent tra 95.6 1.3 2.8E-05 47.4 19.1 192 203-417 463-684 (894)
310 smart00028 TPR Tetratricopepti 95.6 0.019 4.1E-07 33.5 3.7 30 234-263 3-32 (34)
311 KOG0890 Protein kinase of the 95.6 1.2 2.5E-05 52.6 19.8 212 207-422 1458-1732(2382)
312 KOG1310 WD40 repeat protein [G 95.4 0.058 1.3E-06 53.9 8.0 89 212-301 388-479 (758)
313 smart00028 TPR Tetratricopepti 95.4 0.029 6.3E-07 32.7 3.8 31 359-390 3-33 (34)
314 COG4976 Predicted methyltransf 95.4 0.028 6.1E-07 50.4 5.1 59 207-265 4-62 (287)
315 KOG2422 Uncharacterized conser 95.3 1.4 3.1E-05 44.9 17.2 158 245-423 251-450 (665)
316 KOG3616 Selective LIM binding 95.3 0.43 9.3E-06 49.8 13.7 161 235-415 664-847 (1636)
317 KOG3807 Predicted membrane pro 95.3 2.9 6.3E-05 39.9 19.0 175 244-426 196-396 (556)
318 COG4941 Predicted RNA polymera 95.2 0.82 1.8E-05 43.5 14.2 188 213-428 211-401 (415)
319 PF04053 Coatomer_WDAD: Coatom 95.1 0.72 1.6E-05 46.7 14.9 170 209-436 272-442 (443)
320 COG5191 Uncharacterized conser 95.1 0.048 1E-06 51.1 5.8 87 221-307 96-182 (435)
321 PRK15180 Vi polysaccharide bio 95.0 0.37 7.9E-06 47.9 12.0 127 209-358 300-426 (831)
322 KOG1463 26S proteasome regulat 95.0 2.7 5.8E-05 40.3 17.1 152 271-424 133-319 (411)
323 PF12968 DUF3856: Domain of Un 95.0 1.5 3.3E-05 35.4 13.2 90 282-387 24-129 (144)
324 COG4976 Predicted methyltransf 94.9 0.052 1.1E-06 48.7 5.4 60 332-392 4-63 (287)
325 PF09986 DUF2225: Uncharacteri 94.9 0.19 4.2E-06 45.5 9.2 91 335-426 89-199 (214)
326 KOG1310 WD40 repeat protein [G 94.8 0.11 2.4E-06 52.1 7.8 51 338-389 426-476 (758)
327 PF00244 14-3-3: 14-3-3 protei 94.6 2.7 5.8E-05 38.8 16.3 48 374-421 142-198 (236)
328 PRK15180 Vi polysaccharide bio 94.6 0.19 4.1E-06 49.9 8.9 111 281-392 303-425 (831)
329 KOG0529 Protein geranylgeranyl 94.6 2.2 4.7E-05 41.9 15.9 172 215-404 46-241 (421)
330 KOG4814 Uncharacterized conser 94.6 3.2 7E-05 43.0 17.6 90 331-421 362-457 (872)
331 TIGR02561 HrpB1_HrpK type III 94.5 0.72 1.6E-05 38.8 10.9 77 331-408 18-94 (153)
332 PF10602 RPN7: 26S proteasome 94.5 0.51 1.1E-05 41.4 10.7 102 233-353 37-143 (177)
333 KOG2422 Uncharacterized conser 94.4 6 0.00013 40.6 19.0 156 211-389 251-450 (665)
334 KOG1839 Uncharacterized protei 94.2 0.49 1.1E-05 52.6 11.8 148 216-387 956-1128(1236)
335 COG5191 Uncharacterized conser 94.2 0.11 2.4E-06 48.7 6.0 93 286-401 92-185 (435)
336 KOG0529 Protein geranylgeranyl 94.1 2.2 4.7E-05 41.9 14.6 139 243-403 39-194 (421)
337 PF10602 RPN7: 26S proteasome 94.0 0.45 9.7E-06 41.8 9.3 98 199-297 37-143 (177)
338 KOG0128 RNA-binding protein SA 94.0 1.9 4.1E-05 45.8 15.1 204 218-421 298-526 (881)
339 PF13374 TPR_10: Tetratricopep 93.9 0.15 3.2E-06 32.4 4.8 29 233-261 3-31 (42)
340 KOG3364 Membrane protein invol 93.9 0.68 1.5E-05 38.2 9.3 74 357-430 32-109 (149)
341 KOG2041 WD40 repeat protein [G 93.8 1.7 3.6E-05 45.4 13.9 136 233-384 797-936 (1189)
342 KOG1839 Uncharacterized protei 93.7 0.6 1.3E-05 51.9 11.3 164 235-422 935-1129(1236)
343 KOG4814 Uncharacterized conser 93.6 0.92 2E-05 46.7 11.7 94 233-327 355-454 (872)
344 PRK13184 pknD serine/threonine 93.6 6.9 0.00015 43.3 19.2 101 206-308 483-593 (932)
345 KOG3364 Membrane protein invol 93.5 1.8 3.8E-05 35.8 11.0 75 231-306 31-110 (149)
346 PF13374 TPR_10: Tetratricopep 93.5 0.19 4.1E-06 31.9 4.6 29 358-387 3-31 (42)
347 COG4649 Uncharacterized protei 93.4 4.8 0.0001 34.9 14.8 70 331-402 140-210 (221)
348 COG2912 Uncharacterized conser 93.0 0.83 1.8E-05 42.5 9.6 68 331-399 189-256 (269)
349 COG3629 DnrI DNA-binding trans 92.8 4 8.7E-05 38.4 13.9 64 357-421 153-216 (280)
350 COG5159 RPN6 26S proteasome re 92.8 7.7 0.00017 36.4 15.2 204 202-422 7-236 (421)
351 KOG1464 COP9 signalosome, subu 92.8 8.4 0.00018 35.9 15.7 175 245-421 40-260 (440)
352 KOG0890 Protein kinase of the 92.3 6.9 0.00015 46.6 17.3 151 199-367 1630-1799(2382)
353 KOG4014 Uncharacterized conser 92.2 5.8 0.00012 34.7 12.8 106 198-308 34-151 (248)
354 smart00299 CLH Clathrin heavy 92.1 3 6.4E-05 34.7 11.4 32 246-277 21-52 (140)
355 PF15015 NYD-SP12_N: Spermatog 92.0 2.6 5.6E-05 41.5 11.8 88 205-293 183-288 (569)
356 KOG1538 Uncharacterized conser 91.9 11 0.00024 39.3 16.5 58 199-257 586-657 (1081)
357 COG2912 Uncharacterized conser 91.9 0.78 1.7E-05 42.6 7.9 68 237-305 186-253 (269)
358 PF10579 Rapsyn_N: Rapsyn N-te 91.7 2.1 4.5E-05 31.9 8.4 57 276-352 16-72 (80)
359 PF07720 TPR_3: Tetratricopept 91.7 0.7 1.5E-05 28.8 5.1 30 234-263 3-34 (36)
360 COG4649 Uncharacterized protei 91.6 8.7 0.00019 33.4 15.3 54 208-261 68-123 (221)
361 COG1747 Uncharacterized N-term 91.2 19 0.00041 36.7 22.1 189 228-422 62-289 (711)
362 PF12862 Apc5: Anaphase-promot 90.7 1.1 2.5E-05 34.6 6.7 57 333-390 8-73 (94)
363 PF12862 Apc5: Anaphase-promot 90.7 1.1 2.3E-05 34.8 6.6 54 209-262 9-71 (94)
364 KOG2581 26S proteasome regulat 90.4 6.5 0.00014 38.6 12.7 61 331-392 217-281 (493)
365 PF10373 EST1_DNA_bind: Est1 D 90.4 0.91 2E-05 42.6 7.3 62 342-404 1-62 (278)
366 PF10579 Rapsyn_N: Rapsyn N-te 90.4 2 4.3E-05 32.0 7.2 59 202-260 10-71 (80)
367 PF04053 Coatomer_WDAD: Coatom 90.3 2.1 4.6E-05 43.3 10.0 133 240-412 269-409 (443)
368 PF10373 EST1_DNA_bind: Est1 D 89.9 1.1 2.4E-05 42.0 7.4 62 217-278 1-62 (278)
369 PF07721 TPR_4: Tetratricopept 89.7 0.46 9.9E-06 27.1 2.8 23 234-256 3-25 (26)
370 PF11207 DUF2989: Protein of u 89.6 15 0.00032 32.8 13.6 56 355-412 139-198 (203)
371 PF15015 NYD-SP12_N: Spermatog 89.5 5.4 0.00012 39.4 11.4 90 232-322 183-283 (569)
372 COG3629 DnrI DNA-binding trans 89.2 3.8 8.2E-05 38.6 10.1 56 331-387 161-216 (280)
373 KOG2114 Vacuolar assembly/sort 89.1 3.7 8E-05 43.8 10.7 110 207-324 343-454 (933)
374 PF07720 TPR_3: Tetratricopept 88.9 1.6 3.6E-05 27.1 5.1 32 358-390 2-35 (36)
375 KOG1538 Uncharacterized conser 88.6 9 0.00019 39.9 12.7 171 204-384 638-830 (1081)
376 KOG4014 Uncharacterized conser 88.6 16 0.00035 32.0 14.5 168 230-421 32-233 (248)
377 PRK12798 chemotaxis protein; R 88.6 28 0.0006 34.7 21.8 109 222-330 101-214 (421)
378 PF11207 DUF2989: Protein of u 88.4 18 0.00039 32.3 13.2 72 283-378 122-198 (203)
379 PF07721 TPR_4: Tetratricopept 88.3 0.6 1.3E-05 26.6 2.7 22 394-415 3-24 (26)
380 PF04190 DUF410: Protein of un 88.3 22 0.00048 33.2 18.7 78 299-387 88-170 (260)
381 PRK13184 pknD serine/threonine 88.2 14 0.00031 41.0 15.0 91 283-392 491-586 (932)
382 PF10516 SHNi-TPR: SHNi-TPR; 87.7 1 2.2E-05 28.4 3.7 28 234-261 3-30 (38)
383 COG3947 Response regulator con 87.3 9.7 0.00021 35.9 11.1 52 331-383 287-338 (361)
384 COG4455 ImpE Protein of avirul 87.1 5.9 0.00013 35.7 9.3 60 207-266 10-69 (273)
385 KOG0276 Vesicle coat complex C 87.0 5.9 0.00013 40.9 10.3 83 331-419 645-748 (794)
386 PF11817 Foie-gras_1: Foie gra 86.2 17 0.00037 33.7 12.6 80 339-419 154-245 (247)
387 KOG4279 Serine/threonine prote 85.8 2 4.3E-05 45.2 6.5 185 231-430 200-405 (1226)
388 smart00101 14_3_3 14-3-3 homol 85.8 30 0.00064 32.0 17.1 56 202-257 5-64 (244)
389 PF04190 DUF410: Protein of un 85.5 32 0.00069 32.2 18.5 196 204-407 16-243 (260)
390 KOG0889 Histone acetyltransfer 85.4 35 0.00076 42.7 16.9 137 266-423 2812-2956(3550)
391 PF10255 Paf67: RNA polymerase 85.4 7.5 0.00016 38.7 10.1 61 200-260 124-192 (404)
392 smart00386 HAT HAT (Half-A-TPR 85.0 2.6 5.7E-05 24.6 4.5 26 248-273 3-28 (33)
393 smart00386 HAT HAT (Half-A-TPR 84.9 3 6.4E-05 24.3 4.7 31 212-242 1-31 (33)
394 KOG2581 26S proteasome regulat 84.8 43 0.00094 33.2 15.3 133 206-357 134-281 (493)
395 PF10516 SHNi-TPR: SHNi-TPR; 83.3 2.4 5.2E-05 26.8 3.7 28 359-387 3-30 (38)
396 PF12739 TRAPPC-Trs85: ER-Golg 83.1 50 0.0011 33.2 15.2 25 399-423 377-401 (414)
397 PF09670 Cas_Cas02710: CRISPR- 82.6 34 0.00074 34.0 13.6 62 234-296 133-198 (379)
398 PF09670 Cas_Cas02710: CRISPR- 82.6 27 0.0006 34.6 13.0 63 199-261 132-198 (379)
399 COG3947 Response regulator con 82.1 6.4 0.00014 37.1 7.5 61 359-420 281-341 (361)
400 KOG0128 RNA-binding protein SA 82.1 80 0.0017 34.2 23.5 42 381-422 301-342 (881)
401 KOG0276 Vesicle coat complex C 81.7 20 0.00043 37.3 11.3 93 241-348 646-746 (794)
402 KOG1463 26S proteasome regulat 81.5 46 0.001 32.2 13.0 165 204-389 134-318 (411)
403 KOG1920 IkappaB kinase complex 80.8 42 0.0009 37.7 14.1 46 302-347 940-989 (1265)
404 KOG3783 Uncharacterized conser 80.6 73 0.0016 32.8 17.9 192 200-391 269-524 (546)
405 KOG0546 HSP90 co-chaperone CPR 79.4 2.2 4.7E-05 41.1 3.7 107 203-310 227-352 (372)
406 PF12739 TRAPPC-Trs85: ER-Golg 79.4 73 0.0016 32.0 16.4 31 199-229 209-239 (414)
407 COG5536 BET4 Protein prenyltra 78.2 30 0.00065 32.5 10.5 171 215-402 49-237 (328)
408 PF11846 DUF3366: Domain of un 77.8 9.2 0.0002 33.9 7.2 51 212-263 125-175 (193)
409 PRK11619 lytic murein transgly 77.8 1E+02 0.0023 32.9 20.8 205 204-418 247-465 (644)
410 PF13041 PPR_2: PPR repeat fam 77.0 13 0.00028 24.5 6.1 30 232-261 3-32 (50)
411 KOG4279 Serine/threonine prote 76.9 24 0.00052 37.6 10.4 130 210-355 255-398 (1226)
412 PF00244 14-3-3: 14-3-3 protei 76.4 63 0.0014 29.7 15.5 174 201-387 4-198 (236)
413 TIGR03504 FimV_Cterm FimV C-te 75.7 5.6 0.00012 26.0 3.8 25 236-260 3-27 (44)
414 TIGR02710 CRISPR-associated pr 74.7 51 0.0011 32.6 11.8 54 204-257 136-196 (380)
415 TIGR03504 FimV_Cterm FimV C-te 74.5 5.8 0.00013 26.0 3.6 26 396-421 3-28 (44)
416 PF09205 DUF1955: Domain of un 74.3 24 0.00051 29.4 7.8 52 209-260 97-148 (161)
417 KOG0546 HSP90 co-chaperone CPR 74.3 4 8.7E-05 39.3 4.0 77 199-275 276-352 (372)
418 PF12854 PPR_1: PPR repeat 73.8 9.2 0.0002 23.2 4.3 27 231-257 6-32 (34)
419 PF14863 Alkyl_sulf_dimr: Alky 73.8 17 0.00037 30.5 7.3 50 231-280 69-118 (141)
420 COG5536 BET4 Protein prenyltra 73.2 73 0.0016 30.0 11.6 167 236-424 35-225 (328)
421 PF13226 DUF4034: Domain of un 72.8 40 0.00087 31.8 10.2 111 207-317 9-149 (277)
422 PRK11619 lytic murein transgly 72.4 1.4E+02 0.0031 31.9 22.9 88 339-429 295-382 (644)
423 cd02682 MIT_AAA_Arch MIT: doma 72.3 32 0.00069 25.4 7.5 32 333-364 16-54 (75)
424 PF11846 DUF3366: Domain of un 72.3 15 0.00034 32.4 7.2 45 343-389 131-175 (193)
425 COG4455 ImpE Protein of avirul 72.2 14 0.0003 33.4 6.5 61 331-392 9-69 (273)
426 PF12854 PPR_1: PPR repeat 71.8 10 0.00022 23.0 4.1 26 392-417 7-32 (34)
427 PF08311 Mad3_BUB1_I: Mad3/BUB 71.2 56 0.0012 26.7 11.9 108 214-350 1-126 (126)
428 PF13041 PPR_2: PPR repeat fam 69.7 26 0.00055 23.1 6.2 30 357-387 3-32 (50)
429 PF11817 Foie-gras_1: Foie gra 69.6 38 0.00083 31.3 9.4 75 214-289 154-240 (247)
430 smart00299 CLH Clathrin heavy 69.1 19 0.00042 29.7 6.7 84 331-417 15-107 (140)
431 KOG1920 IkappaB kinase complex 68.4 61 0.0013 36.5 11.5 44 305-348 1003-1051(1265)
432 cd02680 MIT_calpain7_2 MIT: do 68.1 12 0.00025 27.7 4.4 18 335-352 18-35 (75)
433 PRK12798 chemotaxis protein; R 67.7 1.4E+02 0.003 29.9 21.2 197 199-416 113-319 (421)
434 KOG2063 Vacuolar assembly/sort 67.6 1.5E+02 0.0032 32.9 14.2 170 200-386 506-712 (877)
435 COG4941 Predicted RNA polymera 67.4 1.3E+02 0.0027 29.3 12.0 30 331-360 373-402 (415)
436 KOG2114 Vacuolar assembly/sort 67.4 77 0.0017 34.4 11.7 30 198-227 368-397 (933)
437 PF14863 Alkyl_sulf_dimr: Alky 66.7 34 0.00073 28.7 7.5 42 331-372 78-119 (141)
438 KOG2758 Translation initiation 66.5 1.3E+02 0.0028 29.1 15.8 78 217-296 114-196 (432)
439 KOG0567 HEAT repeat-containing 66.4 1.1E+02 0.0025 28.5 16.9 167 246-420 63-261 (289)
440 PHA02537 M terminase endonucle 65.8 59 0.0013 29.8 9.4 95 331-427 91-213 (230)
441 cd02680 MIT_calpain7_2 MIT: do 65.4 12 0.00027 27.6 4.1 17 245-261 19-35 (75)
442 KOG2063 Vacuolar assembly/sort 65.4 1.8E+02 0.0039 32.2 14.4 167 235-420 507-712 (877)
443 cd02681 MIT_calpain7_1 MIT: do 65.3 14 0.00031 27.3 4.5 20 333-352 16-35 (76)
444 PF01535 PPR: PPR repeat; Int 64.5 11 0.00024 21.5 3.2 23 236-258 4-26 (31)
445 COG5159 RPN6 26S proteasome re 62.9 1.4E+02 0.0031 28.3 14.8 169 236-422 7-195 (421)
446 cd02682 MIT_AAA_Arch MIT: doma 62.7 53 0.0011 24.3 7.0 24 236-259 10-33 (75)
447 PF10255 Paf67: RNA polymerase 62.4 1.1E+02 0.0023 30.7 11.3 54 331-385 130-191 (404)
448 PF04212 MIT: MIT (microtubule 62.2 25 0.00054 25.2 5.3 21 332-352 14-34 (69)
449 PF09205 DUF1955: Domain of un 61.7 95 0.0021 25.9 9.7 56 331-387 94-149 (161)
450 KOG4521 Nuclear pore complex, 61.4 1.6E+02 0.0035 33.4 13.0 135 266-409 920-1071(1480)
451 PF02184 HAT: HAT (Half-A-TPR) 60.9 20 0.00044 21.7 3.7 27 374-401 3-29 (32)
452 PF04348 LppC: LppC putative l 59.6 3 6.5E-05 43.4 0.0 111 182-293 8-124 (536)
453 PF09797 NatB_MDM20: N-acetylt 59.5 48 0.001 32.6 8.5 47 212-258 197-243 (365)
454 TIGR00756 PPR pentatricopeptid 59.0 23 0.00049 20.6 4.0 26 235-260 3-28 (35)
455 PRK15490 Vi polysaccharide bio 58.8 68 0.0015 33.6 9.5 49 331-382 50-98 (578)
456 PF04090 RNA_pol_I_TF: RNA pol 55.8 1.5E+02 0.0033 26.4 12.5 32 339-370 158-191 (199)
457 KOG4151 Myosin assembly protei 55.7 32 0.00069 36.8 6.6 115 181-305 45-165 (748)
458 PHA02537 M terminase endonucle 55.5 15 0.00033 33.5 3.8 94 207-300 92-211 (230)
459 PF04348 LppC: LppC putative l 54.7 4.1 8.8E-05 42.5 0.0 76 216-292 7-86 (536)
460 KOG0687 26S proteasome regulat 53.9 1.1E+02 0.0023 29.6 9.1 97 199-296 105-210 (393)
461 PF13226 DUF4034: Domain of un 53.7 2E+02 0.0043 27.2 13.6 134 239-372 7-148 (277)
462 PF09797 NatB_MDM20: N-acetylt 53.3 75 0.0016 31.2 8.7 43 283-325 199-241 (365)
463 PF13812 PPR_3: Pentatricopept 53.1 40 0.00088 19.5 4.4 27 234-260 3-29 (34)
464 TIGR02710 CRISPR-associated pr 52.2 2.5E+02 0.0054 27.9 12.8 56 236-292 134-196 (380)
465 COG3014 Uncharacterized protei 51.7 2.4E+02 0.0052 27.5 15.6 34 391-424 212-245 (449)
466 PF07163 Pex26: Pex26 protein; 51.6 2.2E+02 0.0047 27.0 10.6 106 207-313 44-165 (309)
467 cd02681 MIT_calpain7_1 MIT: do 51.3 15 0.00033 27.2 2.6 16 212-227 20-35 (76)
468 PF07163 Pex26: Pex26 protein; 51.0 2.2E+02 0.0048 26.9 12.4 83 331-415 91-181 (309)
469 PRK15490 Vi polysaccharide bio 50.1 84 0.0018 33.0 8.5 56 199-256 43-98 (578)
470 KOG1938 Protein with predicted 50.0 85 0.0018 34.6 8.7 135 215-390 241-387 (960)
471 PF10952 DUF2753: Protein of u 49.9 82 0.0018 25.8 6.6 59 201-259 4-77 (140)
472 PF04097 Nic96: Nup93/Nic96; 49.1 2.6E+02 0.0056 29.8 12.4 197 207-417 267-530 (613)
473 KOG2062 26S proteasome regulat 48.7 3.5E+02 0.0077 29.3 12.6 67 336-407 584-657 (929)
474 KOG1114 Tripeptidyl peptidase 47.1 4.6E+02 0.0099 29.4 14.4 81 339-421 1212-1295(1304)
475 PF05053 Menin: Menin; InterP 47.1 2.5E+02 0.0054 29.3 11.1 45 339-384 295-344 (618)
476 PF12583 TPPII_N: Tripeptidyl 47.1 66 0.0014 26.5 5.7 26 283-308 92-117 (139)
477 cd02679 MIT_spastin MIT: domai 46.8 49 0.0011 24.7 4.7 18 335-352 20-37 (79)
478 PF10952 DUF2753: Protein of u 46.6 1E+02 0.0022 25.2 6.7 57 360-417 4-75 (140)
479 cd02679 MIT_spastin MIT: domai 46.2 18 0.00039 27.0 2.3 15 212-226 22-36 (79)
480 KOG0687 26S proteasome regulat 46.2 2.9E+02 0.0062 26.8 11.8 30 232-261 104-133 (393)
481 KOG1497 COP9 signalosome, subu 46.2 2.9E+02 0.0062 26.8 12.5 72 233-306 104-185 (399)
482 PF15290 Syntaphilin: Golgi-lo 45.2 19 0.00041 33.5 2.7 27 39-83 24-51 (305)
483 COG5187 RPN7 26S proteasome re 45.2 1.3E+02 0.0029 28.5 8.1 63 199-261 116-184 (412)
484 PF04212 MIT: MIT (microtubule 44.6 59 0.0013 23.2 4.8 22 238-259 11-32 (69)
485 PF12549 TOH_N: Tyrosine hydro 43.8 14 0.0003 20.9 1.0 11 56-66 10-20 (25)
486 TIGR03362 VI_chp_7 type VI sec 43.7 3E+02 0.0065 26.3 15.0 48 210-258 111-158 (301)
487 PF07219 HemY_N: HemY protein 43.3 86 0.0019 24.8 6.0 27 236-262 63-89 (108)
488 smart00671 SEL1 Sel1-like repe 43.2 47 0.001 19.6 3.6 12 247-258 20-31 (36)
489 KOG1811 Predicted Zn2+-binding 43.2 4.3E+02 0.0092 27.9 12.0 63 334-400 567-630 (1141)
490 smart00745 MIT Microtubule Int 43.1 68 0.0015 23.4 5.1 17 335-351 20-36 (77)
491 PF05053 Menin: Menin; InterP 42.6 1.3E+02 0.0028 31.3 8.3 18 331-348 326-343 (618)
492 KOG4459 Membrane-associated pr 42.6 1.9E+02 0.0042 29.2 9.3 81 331-418 141-221 (471)
493 cd02683 MIT_1 MIT: domain cont 42.5 1.4E+02 0.003 22.1 7.8 62 284-383 4-72 (77)
494 cd00280 TRFH Telomeric Repeat 42.4 2.4E+02 0.0053 24.9 9.2 39 331-370 119-157 (200)
495 COG3107 LppC Putative lipoprot 42.3 4.2E+02 0.009 27.6 17.4 39 356-394 201-239 (604)
496 KOG0686 COP9 signalosome, subu 42.2 3.7E+02 0.008 26.9 12.4 95 267-385 151-256 (466)
497 PRK09687 putative lyase; Provi 41.9 3.1E+02 0.0066 25.9 18.7 154 215-405 127-280 (280)
498 KOG3677 RNA polymerase I-assoc 41.7 1.2E+02 0.0026 30.3 7.6 102 204-309 241-351 (525)
499 PF08238 Sel1: Sel1 repeat; I 41.5 66 0.0014 19.4 4.2 12 283-294 24-35 (39)
500 cd02678 MIT_VPS4 MIT: domain c 41.4 74 0.0016 23.2 5.0 33 283-352 3-35 (75)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=7e-33 Score=269.44 Aligned_cols=247 Identities=16% Similarity=0.160 Sum_probs=240.5
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.+..+|..++.+++ .+..+|+++|++|-..+.+++|+.+|.+++.+.|+++.++-++|.+|+.+|..+-|+..|+++++
T Consensus 236 ~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 236 LAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred HHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 67889999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013821 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
+.|..+.++.++|..+-..|. ..+|+.+|.+++.+.|++++++++||.++.++|.++.|..+|...+..
T Consensus 315 ~~P~F~~Ay~NlanALkd~G~-V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN 393 (966)
T KOG4626|consen 315 LQPNFPDAYNNLANALKDKGS-VTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN 393 (966)
T ss_pred cCCCchHHHhHHHHHHHhccc-hHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence 999999999999999999875 999999999999999999999999999999999999999999988776
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013821 331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
.+|.++|++++|+.+|+.||++.|..++++.++|.+|..+|+ .+.|+.+|.+|++++|...+++.+||.+|...|+.
T Consensus 394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence 889999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhHHh
Q 013821 409 EDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 409 ~eA~~~~~~al~l~p~~~~~~~ 430 (436)
.+|+..|++++.+.|+|+++.-
T Consensus 473 ~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 473 PEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHHHHHHHccCCCCchhhh
Confidence 9999999999999999998764
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-30 Score=253.82 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=237.4
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
.-.+|...|.+++...+ .++.+|.++|-++...|+...|+..|++++.++|...++|+++|.+|...+.+++|+..|.+
T Consensus 199 rl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred ccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 44577888999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
|+.+.|+.+.++-++|.+|+++| +.+-|+.+|++++++.|+.++++.+++.++.+.|+..+|.+.|.+++..
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG-~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada 356 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQG-LLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA 356 (966)
T ss_pred HHhcCCcchhhccceEEEEeccc-cHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH
Confidence 99999999999999999999987 4999999999999999999999999999999999999999999988776
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.++..+|.+++|...|+++++..|+.+.++.+||.+|.++|+ +++|+.+|+.++.+.|...+++.++|..|..+
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn-l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN-LDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc-HHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 889999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh
Q 013821 406 EEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 406 g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
|+...|+..|.+++.++|.|.++-.
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 9999999999999999999888655
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=8.6e-24 Score=222.74 Aligned_cols=247 Identities=13% Similarity=0.045 Sum_probs=221.5
Q ss_pred CCCChHHHHHhhcCCCC--CCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISV--PGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY 255 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 255 (436)
.+.++..++..++.... .....+|..+|.++...|++++|+..|+++++.+|.+..+|..+|.++...|++++|+..|
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34466677777776542 1566889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013821 256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 330 (436)
+++++.+|+++.+++.+|.+++..++ +++|+.+|+++++++|++..++..+|.++..+|++++|+..+.+++..
T Consensus 389 ~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~ 467 (615)
T TIGR00990 389 DKALKLNSEDPDIYYHRAQLHFIKGE-FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP 467 (615)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999875 999999999999999999999999999999999999999999988875
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 331 -------LPIQSKGDLEGAEEYFSRAILANPGDGEI------MSQYAKLVWE-LHHDHDKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~-~g~d~~eA~~~~~~al~~~p~~~~~~~ 396 (436)
.++...|++++|+..|++++.+.|.+... +...+.+++. .|+ +++|+.+|+++++++|++..++.
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~-~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD-FIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCcHHHHH
Confidence 78889999999999999999999875433 3333444444 577 99999999999999999999999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 397 AYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 397 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
.+|.++..+|++++|+.+|++++++.+...
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 999999999999999999999999977533
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=2.3e-23 Score=219.58 Aligned_cols=245 Identities=11% Similarity=0.032 Sum_probs=217.2
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+++.|..+|.+++.+.+ + +..|.++|.++..+|++++|+..++++++++|++..+|+.+|.+|..+|++++|+..|.
T Consensus 141 ~~~~~Ai~~y~~al~~~p-~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~ 218 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKP-D-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218 (615)
T ss_pred CCHHHHHHHHHHHHhcCC-c-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 477789999999999988 4 67899999999999999999999999999999999999999999999999988876443
Q ss_pred HHH-----------------------------------------------------------------------------
Q 013821 257 HAT----------------------------------------------------------------------------- 259 (436)
Q Consensus 257 ~al----------------------------------------------------------------------------- 259 (436)
.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (615)
T TIGR00990 219 ASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLG 298 (615)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHH
Confidence 322
Q ss_pred -----------------------Hh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 260 -----------------------MA---DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 260 -----------------------~~---~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
.. .|....++..+|.+++.+++ +++|+..|+++++++|++...+..+|.++..
T Consensus 299 ~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~-~~eA~~~~~kal~l~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 299 LKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK-HLEALADLSKSIELDPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 11 24455677788888877764 9999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821 314 MEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~ 381 (436)
.|++++|+..+++.+.. .++...|++++|+.+|+++++++|++..++..+|.++..+|+ +++|+..|
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~-~~eA~~~~ 456 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS-IASSMATF 456 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 99999999999887776 778889999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 382 ERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 382 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
++++...|.++.++..+|.++..+|++++|++.|++++.+.|..
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998764
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.2e-22 Score=214.42 Aligned_cols=246 Identities=12% Similarity=0.066 Sum_probs=156.8
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++.++...+...+...+ ....++..+|......|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 57 ~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred CcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55566666666666666 56666777777667777777777777777777777777777777777777777777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++++|+++.++..++.++...++ +++|+..+++++...|++..++..++ .+...|++++|+..+...+..
T Consensus 136 Al~l~P~~~~a~~~la~~l~~~g~-~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 136 AWLAFSGNSQIFALHLRTLVLMDK-ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 777777777777777777666654 77777777777777777666665543 355666666666666543332
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 331 ------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK----ALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~e----A~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++ |+..|+++++++|++..++..+|.
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~-~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~ 292 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR-SREAKLQAAEHWRHALQFNSDNVRIVTLYAD 292 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 234455555555555555555555555555555555555555 543 555555555555555555555555
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 401 FLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 401 ~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
++...|++++|+..+++++.+.|+...
T Consensus 293 ~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 293 ALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 555555555555555555555555443
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=3.9e-22 Score=210.38 Aligned_cols=244 Identities=11% Similarity=0.065 Sum_probs=158.0
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.|...+.+.+.+++ +++.+|..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+++
T Consensus 91 ~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 55677888888888888 78888999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHhCCCCHHHHHHHH----------------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 258 ATMADPGDGESWMQYA----------------------------------KLVWELHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 258 al~~~p~~~~~~~~la----------------------------------~~~~~~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
++...|+++.++..++ .++...+ ++++|+..|+++++.+|+++.+
T Consensus 170 ~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g-~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 170 QAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVG-KYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHH
Confidence 8888888776665443 2223333 2455555555555555555555
Q ss_pred HHHHHHHHHHccCchH----HHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 304 LAAYACFLWEMEDDGE----DDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~----A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
+..+|.++...|++++ |+..+++.+.. .++...|++++|+.+++++++++|+++.++..+|.++
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555555555555543 44444444433 4445555555555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 368 ~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
...|+ +++|+..|++++..+|++...+..+|.++...|++++|+..|++++++.|.
T Consensus 329 ~~~G~-~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 329 RQVGQ-YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHCCC-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 55555 555555555555555555444444455555555555555555555555443
No 7
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.6e-23 Score=204.00 Aligned_cols=208 Identities=15% Similarity=0.121 Sum_probs=197.0
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+.+|..+|+++--+++++.|+++|+++++++|..+.+|..+|.-+....++|.|..+|++|+..+|.+-.+|+.+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
|.++++ ++.|+-+|++|++++|.+......+| .++.+.|+.++|+.+|++|+.++|.
T Consensus 499 y~Kqek-~e~Ae~~fqkA~~INP~nsvi~~~~g----------------------~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 499 YLKQEK-LEFAEFHFQKAVEINPSNSVILCHIG----------------------RIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred eeccch-hhHHHHHHHhhhcCCccchhHHhhhh----------------------HHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 999986 99999999999999999999998899 8899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
++-..+..|.+++.+++ +++|+..+++..++.|+...+++.+|.+|.++|+.+.|+..|--|+.++|.-..
T Consensus 556 n~l~~~~~~~il~~~~~-~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGR-YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CchhHHHHHHHHHhhcc-hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999 999999999999999999999999999999999999999999999999987554
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=2.8e-21 Score=216.56 Aligned_cols=246 Identities=15% Similarity=0.125 Sum_probs=218.1
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQL---------------- 241 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~---------------- 241 (436)
++++|..++.+++.+++ ....++..+|.++...|++++|+++|+++++.+|++..++..++.+
T Consensus 366 ~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 366 NLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 55678888999999999 7889999999999999999999999999999999988776655544
Q ss_pred --------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 242 --------------------------LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 242 --------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
+...|++++|+..|+++++++|+++.+++.+|.++...++ +++|+..|+++++
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-~~~A~~~l~~al~ 523 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-RSQADALMRRLAQ 523 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 4467999999999999999999999999999999999875 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH----------------------------------------HH-----
Q 013821 296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI----------------------------------------QV----- 330 (436)
Q Consensus 296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----------------------------------------~~----- 330 (436)
..|+++.+++.++.++...++.++|+..++... +.
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~ 603 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST 603 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc
Confidence 999999999888888888887777766654210 00
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 331 -------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW 403 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 403 (436)
.++...|++++|+..|+++++.+|+++.++..++.++...|+ +++|+..|+++++..|+++.++..+|.++.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD-LAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 677888999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHHhhCCCCh
Q 013821 404 ETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 404 ~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
..|++++|+++|++++...|...
T Consensus 683 ~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 683 ALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred hCCCHHHHHHHHHHHhhhCccCC
Confidence 99999999999999998875543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=4.4e-21 Score=214.98 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=176.0
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL--------------LLRNYAQLL 242 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------~~~~la~~~ 242 (436)
.++++|..++.+++.+.+ .++.++..+|.++...|++++|+.+|+++++.+|++.. ....+|.++
T Consensus 283 g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 366788999999999999 78999999999999999999999999999999997642 224568889
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
...|++++|+..|+++++++|.+..++..+|.++...++ +++|+++|+++++++|++..++..++.++.. ++.++|+.
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-~~~~~A~~ 439 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD-YAAAERYYQQALRMDPGNTNAVRGLANLYRQ-QSPEKALA 439 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCHHHHHH
Confidence 999999999999999999999999999999999998875 9999999999999999999999888887753 45666666
Q ss_pred HHHHHHH---------------------HhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821 323 AQEEHIQ---------------------VLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 323 ~~~~~~~---------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~ 381 (436)
.++.+.. ..++...|++++|+.+|+++++++|+++.+++.+|.++..+|+ +++|+..|
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-RSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 5542210 0455667888888888888888888888888888888888877 88888888
Q ss_pred HHHHHhCCCCHH
Q 013821 382 ERAVQASPADSH 393 (436)
Q Consensus 382 ~~al~~~p~~~~ 393 (436)
+++++..|+++.
T Consensus 519 ~~al~~~P~~~~ 530 (1157)
T PRK11447 519 RRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHcCCCCHH
Confidence 777777776554
No 10
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1e-21 Score=187.62 Aligned_cols=222 Identities=17% Similarity=0.201 Sum_probs=205.0
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
....|.+++-.|++-.|...|+++|.++|.+...|..+|.+|....+.++-...|.+|..++|+++.+|++.|.+++-++
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH
Confidence 33344588888999999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHH
Q 013821 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~ 348 (436)
+ +++|+..|++++.++|.+..++..++.++++++++++++..+++.+++ .++..+++|++|++.|..
T Consensus 409 q-~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 409 Q-YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred H-HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 5 999999999999999999999999999999999999999999988888 888899999999999999
Q ss_pred HHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 349 AILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 349 al~~~p~------~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
|+++.|. ++..+...|.+..++.+|+.+|+.++.+|++++|....++..||.+..++|+.++|+++|+++..+.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999 7778888888887777779999999999999999999999999999999999999999999998875
Q ss_pred C
Q 013821 423 P 423 (436)
Q Consensus 423 p 423 (436)
.
T Consensus 568 r 568 (606)
T KOG0547|consen 568 R 568 (606)
T ss_pred H
Confidence 3
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=1.9e-20 Score=204.44 Aligned_cols=243 Identities=13% Similarity=0.110 Sum_probs=154.0
Q ss_pred CChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 180 VSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+++..++..++...+ .....+..++.++...|++++|+.++++++...|.+..+|..+|.++...|++++|+..|++++
T Consensus 550 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 550 EEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555555 4445566666666667777777777777777677777777777777777777777777777777
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013821 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------- 330 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------- 330 (436)
+.+|.++.++..+|.++...++ +++|+..|+++++.+|++..++..++.++...|++++|...+......
T Consensus 629 ~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 629 ALQPDSALALLLLADAYAVMKN-YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred HhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 7777777777777777666653 777777777777777776666666666666666666666666544332
Q ss_pred ---hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821 331 ---LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 331 ---~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
.++...|++++|+..|++++...|++ ..+..++.++...|+ +++|+..+++++...|++..++..+|.++...|+
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGN-TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 45555666666666666666665554 455555555555555 5666666666666566555555666666666666
Q ss_pred hHHHHHHHHHHHhhCCCCh
Q 013821 408 DEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 408 ~~eA~~~~~~al~l~p~~~ 426 (436)
+++|+..|+++++..|+..
T Consensus 786 ~~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHHHHHHHHHHHhCCCCH
Confidence 6666666666655555443
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=2.3e-20 Score=203.82 Aligned_cols=243 Identities=15% Similarity=0.136 Sum_probs=166.0
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+..++.......+ .....|..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++
T Consensus 582 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 582 QLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44556666666666666 56788889999999999999999999999999998888899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++.+|++..++..++.++...++ +++|+..++++.+..|.+...+..+|.++...|++++|...+.+.+..
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 739 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKR-TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA 739 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHH
Confidence 999888888887777777776654 777777777777777777777777777777777777777777655543
Q ss_pred ----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821 331 ----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 331 ----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
.++...|++++|+..++++++.+|++..+++.+|.++..+|+ +++|+..|+++++..|+++.++..++.++...|
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD-YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 444455555555555555555555555555555555555555 555555555555555555544444444444444
Q ss_pred ChHHHHHHHHHHHhhCCC
Q 013821 407 EDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 407 ~~~eA~~~~~~al~l~p~ 424 (436)
+ .+|+.++++++.+.|+
T Consensus 819 ~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPN 835 (899)
T ss_pred c-HHHHHHHHHHHhhCCC
Confidence 4 3344444444444443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=4.1e-20 Score=200.03 Aligned_cols=241 Identities=10% Similarity=0.007 Sum_probs=211.7
Q ss_pred hHHHHHhhcCCCCCC--chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 182 PPMYLAMGLGISVPG--FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 182 a~~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+...+.+++...+ . .+.+|.++|.++.. +++.+|+..|.+++...|++. ....+|.++...|++++|+..|++++
T Consensus 460 ~~~~~~~al~~~p-~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMS-PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCC-CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4455666666666 5 78899999999987 888999999999999999754 46677888889999999999999987
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013821 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------- 330 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------- 330 (436)
...|.+ ..++.+|.++...+ ++++|+.+|+++++.+|.+...+..++..+...|++++|+..+++.++.
T Consensus 537 ~~~p~~-~a~~~la~all~~G-d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~ 614 (987)
T PRK09782 537 LHDMSN-EDLLAAANTAQAAG-NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVA 614 (987)
T ss_pred ccCCCc-HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 775554 45778888888876 5999999999999999998888887777777889999999999988864
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013821 331 --LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
.++.+.|++++|+..|++++.++|+++.++.++|.++...|+ +++|+..|+++++++|+++.++.++|.++..+|++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 788999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCChhH
Q 013821 409 EDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 409 ~eA~~~~~~al~l~p~~~~~ 428 (436)
++|+..|++++++.|+....
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALI 713 (987)
T ss_pred HHHHHHHHHHHhcCCCCchh
Confidence 99999999999999976543
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.9e-20 Score=183.57 Aligned_cols=247 Identities=16% Similarity=0.108 Sum_probs=213.2
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAED 253 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~ 253 (436)
+++.+..++..++..++ .+..++..+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.
T Consensus 50 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred ChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 55678888999999988 678889999999999999999999999988854322 2568899999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821 254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-----NILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
+|+++++.+|.+..++..++.++...++ +++|++.++++++..|.+. ..+..++.++...|++++|...+.+++
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIYQQEKD-WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHhch-HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999888875 9999999999999887753 245678888999999999999998877
Q ss_pred HH------------hHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 329 QV------------LPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 329 ~~------------~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~ 395 (436)
+. .++...|++++|++.|++++..+|.+ ..++..++.++...|+ +++|+..++++++..|+... +
T Consensus 208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~l~~~~~~~p~~~~-~ 285 (389)
T PRK11788 208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-EAEGLEFLRRALEEYPGADL-L 285 (389)
T ss_pred hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCchH-H
Confidence 65 67888999999999999999988876 4667889999999999 99999999999999997654 4
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 396 ~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~ 428 (436)
..++.++.+.|++++|+..++++++..|+....
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~ 318 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRRHPSLRGF 318 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH
Confidence 889999999999999999999999998876543
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.7e-20 Score=183.69 Aligned_cols=232 Identities=14% Similarity=0.067 Sum_probs=206.7
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAKL 275 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 275 (436)
..+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 455567778888999999999999999999999999999999999999999999999998864333 3578899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------------hHHHHcCC
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------------LPIQSKGD 338 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~g~ 338 (436)
+...++ +++|+..|+++++..|.+..++..++.++...|++++|+..+...++. .++...|+
T Consensus 117 ~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGL-LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCC-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 988875 999999999999999999999999999999999999999999876553 34567899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~ 417 (436)
+++|+.+|+++++.+|++..++..+|.++...|+ +++|+..|++++..+|.+ ..++..++.+|...|++++|+..+++
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGD-YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999876 36678899999999999999999999
Q ss_pred HHhhCCCChhHHhhhh
Q 013821 418 FQQVAPIRQGAVTTAN 433 (436)
Q Consensus 418 al~l~p~~~~~~~~a~ 433 (436)
++...|+.......+.
T Consensus 275 ~~~~~p~~~~~~~la~ 290 (389)
T PRK11788 275 ALEEYPGADLLLALAQ 290 (389)
T ss_pred HHHhCCCchHHHHHHH
Confidence 9999988654433333
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.87 E-value=8.4e-20 Score=166.98 Aligned_cols=202 Identities=22% Similarity=0.279 Sum_probs=188.4
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 278 ELHRDQHRALTYFERAALAA--PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
..++ +++|+..|++++... +.....+..+| .++...|++++|+.+|.+++..+|.
T Consensus 111 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 111 QQGK-YEQAMQQFEQAIEDPLYPQPARSLENAG----------------------LCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred Hccc-HHHHHHHHHHHHhccccccchHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 8875 999999999999864 45677788888 8888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 423 (436)
+..++..+|.++...|+ +++|+.++++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 168 ~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 168 RPESLLELAELYYLRGQ-YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999999 99999999999999998899999999999999999999999888776644
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.2e-21 Score=191.00 Aligned_cols=222 Identities=15% Similarity=0.155 Sum_probs=197.6
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC--------------------------------
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY-------------------------------- 228 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------------- 228 (436)
+|...|..-...-. +.+-....+|..|+.+++|++|+++|+.+-+..
T Consensus 337 ~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~ 415 (638)
T KOG1126|consen 337 EALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID 415 (638)
T ss_pred HHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 55555555333323 444555789999999999999999998876554
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 229 --PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 229 --P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
|+.++.|..+|+||--+++++.|++.|++|++++|....+|-.+|.=+.... ++|.|..+|++|+..+|.+..+|+.
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e-e~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE-EFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH-HHHhHHHHHHhhhcCCchhhHHHHh
Confidence 5667889999999999999999999999999999999999999998777776 4999999999999999999999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~ 386 (436)
+| .+|.++++++.|+-.|++|++++|.+......+|.++.++|+ .++|+.+|++|+.
T Consensus 495 lG----------------------~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 495 LG----------------------TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR-KDKALQLYEKAIH 551 (638)
T ss_pred hh----------------------hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHh
Confidence 99 999999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 387 ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 387 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
++|.++...+..+.+++.++++++|+..+++.-++-|+-.-
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~ 592 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS 592 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH
Confidence 99999999999999999999999999999999999886443
No 18
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=6.5e-20 Score=190.43 Aligned_cols=189 Identities=13% Similarity=0.069 Sum_probs=136.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK---------GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
+++++|+.+|+++++.+|+++.+|..+|.++... +++++|+..++++++++|+++.++..+|.++...++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~- 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE- 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-
Confidence 5578999999999999999999999999887643 348899999999999999999999999999888874
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
+++|+..|+++++++|+++.+++.+| .++...|++++|+..++++++++|.++..+..
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg----------------------~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYG----------------------WNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 99999999999999999999999999 55555555555555555555555555554444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 363 YAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 363 la~~~~~~g~d~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
++.+++..|+ +++|+..+++++... |+++.++..+|.++..+|++++|+..++++....|.
T Consensus 412 ~~~~~~~~g~-~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 412 KLWITYYHTG-IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHHhccC-HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 4444555555 555555555555443 445555555555555555555555555555444443
No 19
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=1.1e-19 Score=188.86 Aligned_cols=215 Identities=8% Similarity=-0.027 Sum_probs=193.7
Q ss_pred CChHHHHHhhcCCCCCCchhhhhhHHhhhhh---------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 013821 180 VSPPMYLAMGLGISVPGFDDAGEVVDLIMPN---------FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYR 250 (436)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~---------~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 250 (436)
..|..++.+++.+++ +++.+|..+|.++.. .+++++|+..++++++++|+++.++..+|.++...|++++
T Consensus 278 ~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 278 QQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 367788999999999 789899998876552 3458999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821 251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
|+..|+++++++|+++.+++.+|.++...|+ +++|+..++++++++|.++..+..++
T Consensus 357 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~l~P~~~~~~~~~~---------------------- 413 (553)
T PRK12370 357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQ-LEEALQTINECLKLDPTRAAAGITKL---------------------- 413 (553)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCChhhHHHHH----------------------
Confidence 9999999999999999999999999999875 99999999999999999988777666
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
.+++..|++++|+..+++++... |+++.++.++|.++..+|+ +++|+..+++++...|....++..++..|...|+
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~-~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 490 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK-HELARKLTKEISTQEITGLIAVNLLYAEYCQNSE-- 490 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC-HHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--
Confidence 66677899999999999999885 7889999999999999999 9999999999999999988899999999998884
Q ss_pred HHHHHHHHHHhh
Q 013821 410 DDSKSSDQFQQV 421 (436)
Q Consensus 410 eA~~~~~~al~l 421 (436)
+|...++++++.
T Consensus 491 ~a~~~l~~ll~~ 502 (553)
T PRK12370 491 RALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHHHH
Confidence 777777776664
No 20
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=2.6e-19 Score=157.04 Aligned_cols=207 Identities=22% Similarity=0.245 Sum_probs=193.7
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+.+.+.+|.-|+..|++..|..-++++|+.+|++..+|..+|.+|...|+.+.|.+.|++|+.++|++.++++++|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 278 ELHRDQHRALTYFERAALA--APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
.+++ +++|...|++|+.. .+.....+.++| .|..++|+++.|..+|+++|+++|+
T Consensus 115 ~qg~-~~eA~q~F~~Al~~P~Y~~~s~t~eN~G----------------------~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 115 AQGR-PEEAMQQFERALADPAYGEPSDTLENLG----------------------LCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred hCCC-hHHHHHHHHHHHhCCCCCCcchhhhhhH----------------------HHHhhcCCchhHHHHHHHHHHhCcC
Confidence 9985 99999999999985 467889999999 9999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~ 428 (436)
++.....++...+..|+ |..|..++++.....+-....+.....+-...|+.+.+-.+=.+.....|...+-
T Consensus 172 ~~~~~l~~a~~~~~~~~-y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 172 FPPALLELARLHYKAGD-YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred CChHHHHHHHHHHhccc-chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999999999 9999999999998888888888888889999999999998888888888876553
No 21
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=3.5e-19 Score=170.53 Aligned_cols=215 Identities=11% Similarity=0.014 Sum_probs=170.0
Q ss_pred HHHHhhcC---CCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 184 MYLAMGLG---ISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 184 ~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
..+...+. +++...+..|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444443 333344678999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++|++..++.++|.+++..++ +++|++.|+++++++|+++.... +. .+....++++
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~-~~eA~~~~~~al~~~P~~~~~~~-~~----------------------~l~~~~~~~~ 182 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGR-YELAQDDLLAFYQDDPNDPYRAL-WL----------------------YLAESKLDPK 182 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHH-HH----------------------HHHHccCCHH
Confidence 999999999999999998875 99999999999999999974211 11 2334567899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q 013821 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA-------VQASPADSHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 413 (436)
+|+..|.+++...+.. .|. ++.+...+|+ +.++ ..++.+ +++.|...++|+.+|.++.++|++++|+.
T Consensus 183 ~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~-~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 183 QAKENLKQRYEKLDKE--QWG-WNIVEFYLGK-ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHHHhhCCcc--ccH-HHHHHHHccC-CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999998776554322 222 4556666666 5433 233333 35666777889999999999999999999
Q ss_pred HHHHHHhhCC-CChh
Q 013821 414 SSDQFQQVAP-IRQG 427 (436)
Q Consensus 414 ~~~~al~l~p-~~~~ 427 (436)
+|+++++++| +|.+
T Consensus 258 ~~~~Al~~~~~~~~e 272 (296)
T PRK11189 258 LFKLALANNVYNFVE 272 (296)
T ss_pred HHHHHHHhCCchHHH
Confidence 9999999885 5544
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.9e-20 Score=173.54 Aligned_cols=207 Identities=19% Similarity=0.203 Sum_probs=191.7
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
+..-+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.|-.+|+.+|+.|..+
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence 44457888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+- +.=|+-+|++|+++.|+|...|..|| .+|.+.++.++|+.+|++|+.....+..+
T Consensus 412 ~M-h~YaLyYfqkA~~~kPnDsRlw~aLG----------------------~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 412 KM-HFYALYYFQKALELKPNDSRLWVALG----------------------ECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred cc-hHHHHHHHHHHHhcCCCchHHHHHHH----------------------HHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 86 89999999999999999999999999 88999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 360 MSQYAKLVWELHHDHDKALCYFERAVQ-------ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~eA~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
+..||.++.++++ ..+|..+|++.++ ..|.-..+...|+..+.+.+++++|..+..+++.-.+.-.++..
T Consensus 469 l~~LakLye~l~d-~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~ 545 (559)
T KOG1155|consen 469 LVRLAKLYEELKD-LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKA 545 (559)
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999 9999999999998 44555678888999999999999999999988887666655544
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=2.5e-19 Score=194.01 Aligned_cols=243 Identities=13% Similarity=0.030 Sum_probs=203.2
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++.++...+..+....+ ... ...++|.++...|++++|+..|++++...|.+ ..++.+|.++...|++++|+.+|++
T Consensus 491 ~~~eAi~a~~~Al~~~P-d~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 491 LPGVALYAWLQAEQRQP-DAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CcHHHHHHHHHHHHhCC-chH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55566666666666666 322 34455666678888888888888877765543 4567888888888888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++.+|.....+..++..+...+ ++++|+..|+++++++|+ ..++.++|.++.+.|++++|+..+.+.+..
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~G-r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a 645 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPG-QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNY 645 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 88888888777766665555555 488888888888888886 888888888888888888888888877776
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.++...|++++|+..|+++++++|+++.+++++|.++..+|+ +++|+.+|+++++++|++..+...+|++....
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 678899999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCh
Q 013821 406 EEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 406 g~~~eA~~~~~~al~l~p~~~ 426 (436)
.+++.|.+.|.++..+.|...
T Consensus 725 ~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 725 FNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHHhhcCccch
Confidence 999999999999999988755
No 24
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=9.5e-20 Score=178.01 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=185.0
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
-+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...+
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHHHHHHccCchHH--HHHHHHHHHHhHHHHcCC
Q 013821 281 RDQHRALTYFERAALAAPQDS--------------------NILAAYACFLWEMEDDGED--DKAQEEHIQVLPIQSKGD 338 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~--------------------~~~~~la~~~~~~g~~~~A--~~~~~~~~~~~~~~~~g~ 338 (436)
- -.+|.+++.+-+...|... ..+..+...+......... .--+...+- .+|.-.|+
T Consensus 368 ~-q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG-VLy~ls~e 445 (579)
T KOG1125|consen 368 L-QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG-VLYNLSGE 445 (579)
T ss_pred h-HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH-HHHhcchH
Confidence 5 7899999999887765321 1111111111111110000 000000000 88889999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 418 (436)
|++|+.||+.||...|++...|+.||..+..-.+ ..+|+..|.+|+++.|..+.++++||..++.+|.|++|+++|-.|
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999998888 999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q 013821 419 QQVAPI 424 (436)
Q Consensus 419 l~l~p~ 424 (436)
+.+.++
T Consensus 525 L~mq~k 530 (579)
T KOG1125|consen 525 LSMQRK 530 (579)
T ss_pred HHhhhc
Confidence 999766
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.3e-18 Score=166.60 Aligned_cols=221 Identities=17% Similarity=0.221 Sum_probs=202.4
Q ss_pred hcCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821 176 IERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY 255 (436)
Q Consensus 176 ~~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 255 (436)
..++..+-.-+..++.+++ .+...|+.++.+|+...+.++-...|.++..++|+++++|+.+|++++-.+++++|+..|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 3466667777888888888 566779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013821 256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 330 (436)
++++.++|++...+..++.+++++++ ++++...|+.+++..|..++++...+.++.+++++++|.+.|+.++..
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k-~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHK-IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999986 999999999999999999999999999999999999999999987766
Q ss_pred --------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 331 --------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 331 --------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~ 396 (436)
.++.-.+++.+|+.++++|++++|....++..+|.+..++|+ .++|+++|++++.+.....+...
T Consensus 497 ~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~-i~eAielFEksa~lArt~~E~~~ 575 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK-IDEAIELFEKSAQLARTESEMVH 575 (606)
T ss_pred cccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhHHHHHH
Confidence 445566999999999999999999999999999999999999 99999999999998776555444
Q ss_pred HHH
Q 013821 397 AYA 399 (436)
Q Consensus 397 ~la 399 (436)
.+.
T Consensus 576 a~s 578 (606)
T KOG0547|consen 576 AYS 578 (606)
T ss_pred HHH
Confidence 433
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.5e-17 Score=178.96 Aligned_cols=246 Identities=13% Similarity=0.063 Sum_probs=158.1
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++.+|..++.+++.+.+ .++.++..++.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..+++
T Consensus 64 ~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 64 QWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 45566666666666666 56666677777777777777777777777777777777 77777777777777777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------------------
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL------------------------------------------ 295 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~------------------------------------------ 295 (436)
+++..|+++.++..++.++...+ ..++|+..++++..
T Consensus 142 al~~~P~~~~~~~~la~~l~~~~-~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 142 ALPRAPQTQQYPTEYVQALRNNR-LSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 77777777777777776665443 36666655542110
Q ss_pred ----h---CCCCHH----H-----------------------------------HHHHHHHHHHccCchHHHHHHHHHHH
Q 013821 296 ----A---APQDSN----I-----------------------------------LAAYACFLWEMEDDGEDDKAQEEHIQ 329 (436)
Q Consensus 296 ----~---~p~~~~----~-----------------------------------~~~la~~~~~~g~~~~A~~~~~~~~~ 329 (436)
. +|.... + ...++.++...|++++|+..+++.++
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 1 111100 0 00123333333444444443333222
Q ss_pred H----------------hHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhcCCHHHHH
Q 013821 330 V----------------LPIQSKGDLEGAEEYFSRAILANPG---------------DGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 330 ~----------------~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~d~~eA~ 378 (436)
. .++...|++++|+..+++++...|. ...++..++.++...|+ +++|+
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~-~~eA~ 379 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND-LPQAE 379 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC-HHHHH
Confidence 1 1344556666666666666666552 13456677778888888 88888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
..+++++...|++..++..+|.++...|++++|++.+++++.+.|+...
T Consensus 380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 8888888888888888888888888888888888888888888887654
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=4.5e-18 Score=173.47 Aligned_cols=219 Identities=17% Similarity=0.210 Sum_probs=185.9
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
...++.++.++..|++++|+.++.++|+++|.++.+|+.||.+|.++|+.+++...+-.|-.++|.+.+.|..++.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 56677778888888888888888888888888888888888888888888888888888888888888888888888777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------------------
Q 013821 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------------------------- 330 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------------- 330 (436)
++. +.+|+-+|.+|++.+|.+....+..+.++.++|+...|+..+.+.++.
T Consensus 220 ~~~-i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGN-INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred ccc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 765 888888888888888888888888888888888888877776622221
Q ss_pred --------------------------------------------------------------------------------
Q 013821 331 -------------------------------------------------------------------------------- 330 (436)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (436)
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence
Q ss_pred -------------------------------------------hHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 013821 331 -------------------------------------------LPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKL 366 (436)
Q Consensus 331 -------------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 366 (436)
.++...|++.+|+.+|..++...+. +..+|+.+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 6778889999999999988877653 46799999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821 367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 367 ~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 419 (436)
|..+|. +++|+..|++++...|++.++...|+.++.++|+.++|++.+++..
T Consensus 459 ~~~l~e-~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELGE-YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhh-HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999 9999999999999999999999999999999999999988888765
No 28
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.9e-18 Score=168.28 Aligned_cols=211 Identities=15% Similarity=0.119 Sum_probs=192.7
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+..|+.+|..|+..|++.+|.++|.++..++|....+|..+|..+...|+.++|+..|.+|-++-|....-...+|.-
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME 389 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999999999999999999999987777788877
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC-
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP- 354 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p- 354 (436)
|...+. +..|.++|.+|+.+.|.++.++..+| .+.+..+.|.+|..+|+.++..-+
T Consensus 390 y~~t~n-~kLAe~Ff~~A~ai~P~Dplv~~Elg----------------------vvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 390 YMRTNN-LKLAEKFFKQALAIAPSDPLVLHELG----------------------VVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHhcc-HHHHHHHHHHHHhcCCCcchhhhhhh----------------------heeehHhhhHHHHHHHHHHHHHhhh
Confidence 777775 99999999999999999999999999 888889999999999999995422
Q ss_pred ------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821 355 ------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 355 ------~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~ 428 (436)
.....+.+||.++.++++ +++|+.+|+++|.+.|.++.++..+|.+|..+|+.+.|++.|.++|.+.|+....
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNK-YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhh-HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 234568999999999999 9999999999999999999999999999999999999999999999999987655
Q ss_pred Hh
Q 013821 429 VT 430 (436)
Q Consensus 429 ~~ 430 (436)
.+
T Consensus 526 ~~ 527 (611)
T KOG1173|consen 526 SE 527 (611)
T ss_pred HH
Confidence 44
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.3e-18 Score=162.15 Aligned_cols=195 Identities=17% Similarity=0.206 Sum_probs=173.8
Q ss_pred hHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HH-------------------------------HHHHHHHHHHcCCH
Q 013821 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LL-------------------------------LRNYAQLLQKKGDL 248 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~-------------------------------~~~la~~~~~~g~~ 248 (436)
..|.+.+...++++|+..|+..++.+|-.. +. ...+|+.|...++.
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 456688889999999999999999888422 11 11235566677788
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
++|+.+|++|++++|....+|..+|.=|.++.+ ...|+..|++|++++|.|..+|+.+|
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~DyRAWYGLG-------------------- 405 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRDYRAWYGLG-------------------- 405 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchhHHHHhhhh--------------------
Confidence 999999999999999999999999999999876 89999999999999999999999999
Q ss_pred HHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013821 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 329 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
..|.-++-..-|+-+|++|+.+.|.+...|..||.||.++++ .++|+++|.+++.....+..++..+|.+|.++++.
T Consensus 406 --QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 406 --QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred --HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 888888999999999999999999999999999999999999 99999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 013821 409 EDDSKSSDQFQQV 421 (436)
Q Consensus 409 ~eA~~~~~~al~l 421 (436)
.+|..+|++.++.
T Consensus 483 ~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 483 NEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999884
No 30
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.6e-18 Score=162.83 Aligned_cols=249 Identities=16% Similarity=0.094 Sum_probs=215.5
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+++..+|..++.+++ .+..-|.+....+..+|+|++|+.--.+.++++|+.+..|..+|..+.-+|+|++|+..|.+
T Consensus 17 d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred cHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 66789999999999999 58888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHH-----------------------------------------------------------------
Q 013821 258 ATMADPGDGESWMQY----------------------------------------------------------------- 272 (436)
Q Consensus 258 al~~~p~~~~~~~~l----------------------------------------------------------------- 272 (436)
.++.+|.+......+
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 999999874443333
Q ss_pred -------------------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821 273 -------------------------------------------------------AKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 273 -------------------------------------------------------a~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
|...+... ++..|+++|.++++++
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk-~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK-DFETAIQHYAKALELA 254 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh-hHHHHHHHHHHHHhHh
Confidence 33333332 3578999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------------------------------------------
Q 013821 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------------------------------------- 330 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------------------------------------- 330 (436)
.+...+.+.+-++...|.+.+.+..+...++.
T Consensus 255 -~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 -TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred -hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 77777777777777777766555444422221
Q ss_pred --------------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013821 331 --------------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 331 --------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~ 378 (436)
..++..|+|..|+..|.+||..+|+++..|.+.|.||..+|. +..|+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~-~~~aL 412 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE-YPEAL 412 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh-HHHHH
Confidence 778899999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
..++++++++|++..+|...|.++..+.+|++|.+.|.++++.+|...+...
T Consensus 413 ~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~ 464 (539)
T KOG0548|consen 413 KDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAID 464 (539)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 9999999999999999999999999999999999999999999998766543
No 31
>PLN02789 farnesyltranstransferase
Probab=99.80 E-value=1.1e-17 Score=160.34 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=178.5
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
.++.-+-.++...+..++|+..+.++|+++|++..+|..++.++..+| ++++++..++++++.+|++..+|..++.++.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 344444446667788899999999999999999999999999999988 6799999999999999999999999998887
Q ss_pred HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 278 ELHRD-QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 278 ~~~~d-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
..+.. +++++.+++++++.+|++..+|...+ +++...|++++|++++.++|+.+|.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~----------------------w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQ----------------------WVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 77642 36789999999999999999999999 88888889999999999999999999
Q ss_pred HHHHHHHHHHHHHh---cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCCh
Q 013821 357 GEIMSQYAKLVWEL---HH---DHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 357 ~~~~~~la~~~~~~---g~---d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~~ 426 (436)
..+|+.++.++..+ |+ ..++++.+..+++.++|++..+|..++.++.. +++..+|+..+.+++...|+..
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 99999999888765 33 02467888889999999999999999998887 4556778888888888777766
Q ss_pred hHHh-hhhhc
Q 013821 427 GAVT-TANVY 435 (436)
Q Consensus 427 ~~~~-~a~~y 435 (436)
.+.. .+.+|
T Consensus 256 ~al~~l~d~~ 265 (320)
T PLN02789 256 FALSDLLDLL 265 (320)
T ss_pred HHHHHHHHHH
Confidence 5544 55554
No 32
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=2.9e-18 Score=156.80 Aligned_cols=224 Identities=13% Similarity=0.093 Sum_probs=208.2
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
..+|.+|+++|.+.+|.+.++.+++..| .++.+..++.+|.+..++..|+..|...+...|.+...+..++.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4689999999999999999999999988 889999999999999999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHH
Q 013821 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRA 349 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~a 349 (436)
+++|+++|+.+++.+|.+.++...++..++..++.+-|+..|++.++. .++...++++-++..|++|
T Consensus 306 -~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 -QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred -HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999988877 6777889999999999999
Q ss_pred HHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 350 ILANP---GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 350 l~~~p---~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
+.... .-.++|+++|.+....|+ +.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-.+.|+..
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD-~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGD-FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccc-hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 98743 236899999999999999 99999999999999999999999999999999999999999999999998865
Q ss_pred hH
Q 013821 427 GA 428 (436)
Q Consensus 427 ~~ 428 (436)
++
T Consensus 464 E~ 465 (478)
T KOG1129|consen 464 EV 465 (478)
T ss_pred cc
Confidence 54
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=3.1e-19 Score=169.93 Aligned_cols=240 Identities=20% Similarity=0.214 Sum_probs=82.5
Q ss_pred cCCCChHHHHHhhcCCC-CCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGIS-VPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY 255 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 255 (436)
.+|+.|...+..+..-. +..+...|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|+.++
T Consensus 22 ~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~ 100 (280)
T PF13429_consen 22 GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLA 100 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 46667777665544333 235667777777777778888888888888888777777777777777 6778888888887
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---
Q 013821 256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--- 330 (436)
Q Consensus 256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 330 (436)
.++.+..+ ++..+..+..++...+ +++++...++++.... +.++..|..+|.++...|+.++|+..++++++.
T Consensus 101 ~~~~~~~~-~~~~l~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 101 EKAYERDG-DPRYLLSALQLYYRLG-DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp ------------------H-HHHTT--HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred cccccccc-ccchhhHHHHHHHHHh-HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 77776553 4555666666666555 4788888887776554 567777777887777777777777666666655
Q ss_pred ---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 331 ---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+++...|+++++.+.+....+..|.++..|..+|.++..+|+ +++|+.+|++++..+|+++.++..+|.+
T Consensus 179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-cccccccccccccccccccccccccccc
Confidence 455556666666666666666666666666666777777766 6777777777777777767666777777
Q ss_pred HHHCCChHHHHHHHHHHHh
Q 013821 402 LWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 402 ~~~~g~~~eA~~~~~~al~ 420 (436)
+...|+.++|..++++++.
T Consensus 258 l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 258 LEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HT-----------------
T ss_pred ccccccccccccccccccc
Confidence 7777777777666666654
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=1.5e-18 Score=165.29 Aligned_cols=205 Identities=21% Similarity=0.221 Sum_probs=108.7
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+...+.+.+..+. ..+..+..++.+ ...+++++|+.+++++.+..+ ++..+..+..++...++++++...+++
T Consensus 59 ~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 55567777777777776 566667777777 688999999999999888664 567778888889999999999999999
Q ss_pred HHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013821 258 ATMAD--PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 258 al~~~--p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 330 (436)
+.... +.++.+|..+|.++...|+ +++|+.+|+++++++|++..++..++.++...|+.+++..++..+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGD-PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence 87655 6788899999999888875 999999999999999999999999999999999999888888766655
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 331 -------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
.++...|++++|+.+|+++++.+|+++.++..+|.++...|+ .++|..++++++..
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~-~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR-KDEALRLRRQALRL 277 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 889999999999999999999999999999999999999999 99999999998753
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=1.9e-17 Score=145.34 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
.+...+|.-|+..|++..|..-+++|++.+|++..+|..+|.+|...|. .+.|.+.|++|+.++|++.++++++|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge-~~~A~e~YrkAlsl~p~~GdVLNNYG---- 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE-NDLADESYRKALSLAPNNGDVLNNYG---- 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hhhHHHHHHHHHhcCCCccchhhhhh----
Confidence 6788999999999999999999999999999999999999999888875 99999999999999999999999999
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
+.++.+|++++|..+|++|+.. .+....+|.|+|.|..++|+ ++.|..+|+++++++|+
T Consensus 111 ------------------~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 111 ------------------AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALELDPQ 171 (250)
T ss_pred ------------------HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHhCcC
Confidence 8888899999999999999975 35667899999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821 391 DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 423 (436)
++.....++..+++.|++..|..++++....-+
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 999999999999999999999999998877655
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=1.1e-16 Score=146.31 Aligned_cols=173 Identities=22% Similarity=0.258 Sum_probs=161.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
.+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...++ +++|++.|+++++..|.+..++..++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~-- 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE-LEKAEDSFRRALTLNPNNGDVLNNYG-- 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHH--
Confidence 468899999999999999999999999999999999999999999999875 99999999999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~ 388 (436)
.++...|++++|+..|++++... +.....+..+|.++...|+ +++|+..+.+++...
T Consensus 107 --------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 107 --------------------TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-FDKAEKYLTRALQID 165 (234)
T ss_pred --------------------HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Confidence 88889999999999999999864 5567889999999999999 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
|++..++..++.++...|++++|+..+++++.+.|....
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999998765433
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=5.6e-16 Score=154.63 Aligned_cols=215 Identities=13% Similarity=0.064 Sum_probs=167.6
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPL-LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
+......|+++.|..+|+++.+.+|++.. .....+.++...|++++|+..++++.+.+|+++.++..++.+|...+ |+
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g-dw 203 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG-AW 203 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hH
Confidence 44446667777777777777666666542 22334666667777777777777777777777777777766666665 36
Q ss_pred HHHHHHHHHHH------------------------------------------HhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821 284 HRALTYFERAA------------------------------------------LAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 284 ~~A~~~~~~al------------------------------------------~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
++|++.+.+.. +..|+++.++..++..+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 66664443333 233557788889999999999999999
Q ss_pred HHHHHHHHH---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 322 KAQEEHIQV---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 322 ~~~~~~~~~---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
..+++.++. ......++.+++++.+++.++.+|+++..+..+|.++...++ +++|..+|+++++..|++
T Consensus 284 ~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~-~~~A~~~le~al~~~P~~- 361 (398)
T PRK10747 284 QIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE-WQEASLAFRAALKQRPDA- 361 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCH-
Confidence 999988877 223345999999999999999999999999999999999999 999999999999999985
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 393 HVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
..+..++.++.++|+.++|..+|++++.+.
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 556789999999999999999999998764
No 38
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.76 E-value=5.2e-17 Score=149.56 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=161.0
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LL------------LRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
+..+.+..|.+++++|++++|+.-|++.+..+|.+. ++ +......+...|++..|+++..+.+++
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 334455555555555555555555555555555321 11 111222233345555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------
Q 013821 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------- 330 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------- 330 (436)
.|-++..+...+.||...+. ...|+..++.+-++..++.+.++.++.+++..|+.+.++..++++++.
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY 263 (504)
T ss_pred CcchhHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH
Confidence 55556666666777666653 777777777777777777777777777777777777777766655544
Q ss_pred -------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 331 -------------LPIQSKGDLEGAEEYFSRAILANPGDGEI----MSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393 (436)
Q Consensus 331 -------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~ 393 (436)
......++|.++++..+++++.+|..+.+ ...+..|+..-++ +.+|+..+.++|+.+|+++.
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC-HHHHHHHHHHHHhcCchHHH
Confidence 34456678888888888888888875443 3345566777788 99999999999999999999
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 394 VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
++...+.+|+-...|++|+..|+++++.+++...+..
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 9999999999999999999999999999998776554
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.3e-16 Score=163.78 Aligned_cols=246 Identities=15% Similarity=0.145 Sum_probs=208.2
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
++...|...+.-.+ ++.-+..+.+.+.+..++|..|+.+|++++.++|... +....+|.|+.++|+.+.|+..|.+++
T Consensus 148 ~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHH
Confidence 56666666666666 6677788888889999999999999999999998654 777888999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821 260 MADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++|.+..++..||.+-.... ..+..++..+.++...++.++.++..|+.-++..|+++.+..+...++..
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ 306 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK 306 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999998887755432 12678999999999999999999999999999999999988888765554
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 331 --------LPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.|..+|+|++|..+|.++++.++++ .-.++.+|.++...|+ ++.|+.+|++++...|++.+....+|.+
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d-le~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD-LEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch-HHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 78888999999999999999999988 7788899999999998 9999999999999999999999999999
Q ss_pred HHHCC----ChHHHHHHHHHHHhhCCCChhH
Q 013821 402 LWETE----EDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 402 ~~~~g----~~~eA~~~~~~al~l~p~~~~~ 428 (436)
|...+ ..+.|..+..+++...|.-..+
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a 416 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEA 416 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHH
Confidence 88875 5677888888888887654443
No 40
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=3.3e-17 Score=160.40 Aligned_cols=211 Identities=13% Similarity=0.088 Sum_probs=186.3
Q ss_pred CCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 179 PVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 179 p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
-.+|.+.|..++.-+| ....+|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|+.++.+-
T Consensus 301 L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKW 379 (579)
T ss_pred chHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3466778888888888 788999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHhCC-------------------------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 259 TMADP-------------------------------------------GDGESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 259 l~~~p-------------------------------------------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
+...| .++++...||.+|+-.+ +|++|+.+|+.||.
T Consensus 380 i~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~-efdraiDcf~~AL~ 458 (579)
T KOG1125|consen 380 IRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG-EFDRAVDCFEAALQ 458 (579)
T ss_pred HHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch-HHHHHHHHHHHHHh
Confidence 66543 23778888997666555 69999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 013821 296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~ 375 (436)
..|+|...|..|| ..+....+..+|+..|++|+++.|....++++||..++.+|. |.
T Consensus 459 v~Pnd~~lWNRLG----------------------AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-yk 515 (579)
T KOG1125|consen 459 VKPNDYLLWNRLG----------------------ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YK 515 (579)
T ss_pred cCCchHHHHHHhh----------------------HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HH
Confidence 9999999999999 888888999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCChHHHHHH
Q 013821 376 KALCYFERAVQASPA----------DSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 376 eA~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~eA~~~ 414 (436)
+|.++|-.||.+.+. +..+|..|-.++.-+++.+-+...
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 999999999988654 125888888888888888755443
No 41
>PLN02789 farnesyltranstransferase
Probab=99.76 E-value=2e-16 Score=151.78 Aligned_cols=229 Identities=13% Similarity=0.111 Sum_probs=195.8
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD-DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL--YRAEDY 254 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~--~~A~~~ 254 (436)
....|...+..++.+.+ ++..+|...|.++..+| ++++++..++++++.+|++..+|..++.++...|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 55678888999999999 89999999999999998 689999999999999999999999999999999874 789999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013821 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 334 (436)
++++++.+|++..+|..++.++...+. +++|++++.++|+.+|.+..+|..++.++...+... .
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~-~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~---------------~ 194 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGG-WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG---------------G 194 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc---------------c
Confidence 999999999999999999999999985 999999999999999999999999995554332100 0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----
Q 013821 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE---- 406 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---- 406 (436)
.....++++.+..++|..+|++..+|.+++.++.. +++ ..+|+..+.+++...|..+.++..|+.++....
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~-~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS-DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc-chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 01123578899999999999999999999999988 455 577999999999999999999999999998643
Q ss_pred --------------ChHHHHHHHHHHHhhCCC
Q 013821 407 --------------EDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 407 --------------~~~eA~~~~~~al~l~p~ 424 (436)
..++|.+++...-..+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 236677777777555553
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=9e-16 Score=153.86 Aligned_cols=240 Identities=11% Similarity=0.010 Sum_probs=164.8
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
++..|...+.++....+ .....+...|.+....|+++.|..+|+++.+..|++. .+...++.++...|++++|...++
T Consensus 99 ~~~~A~~~l~~~~~~~~-~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAA-EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555555555 4445555556666666666666666666666666553 344445666666666666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------------------HHhCC
Q 013821 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA--------------------------------------ALAAP 298 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a--------------------------------------l~~~p 298 (436)
+.++..|+++.++..++.++...+ |+++|++.+.+. .+..|
T Consensus 178 ~l~~~~P~~~~~l~ll~~~~~~~~-d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 178 KLLEMAPRHKEVLKLAEEAYIRSG-AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 666666666666666666666555 355555544443 33344
Q ss_pred ----CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCH--H
Q 013821 299 ----QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDG--E 358 (436)
Q Consensus 299 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~--~ 358 (436)
+++.++..++..+...|+.++|...+++.++. ......++.+++++.++++++..|+++ .
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ 336 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC 336 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH
Confidence 46777778888888888888888888877775 122334677888888888888888888 7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 359 IMSQYAKLVWELHHDHDKALCYFE--RAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~eA~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
.+..+|+++++.|+ +++|.++|+ ++++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus 337 ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 337 INRALGQLLMKHGE-FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHccc-HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888888888888 888888888 57777786544 558888888888888888888887654
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.2e-16 Score=151.70 Aligned_cols=223 Identities=20% Similarity=0.163 Sum_probs=185.5
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+..++..|-..++.+++ -++.+..+.|++.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-
T Consensus 470 k~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred cchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 355577788888899988 6888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013821 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
+.-.+--++.++++.++.+|..+. +..+|++++.++..+-|+++.++..|+ .+|-+.
T Consensus 549 klh~il~nn~evl~qianiye~le-d~aqaie~~~q~~slip~dp~ilskl~----------------------dlydqe 605 (840)
T KOG2003|consen 549 KLHAILLNNAEVLVQIANIYELLE-DPAQAIELLMQANSLIPNDPAILSKLA----------------------DLYDQE 605 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhh-CHHHHHHHHHHhcccCCCCHHHHHHHH----------------------HHhhcc
Confidence 999999999999999999998887 599999999999999999999999999 666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Q 013821 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSD 416 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 416 (436)
|+-.+|..++-...+..|.+.++.-+||..|....- +++|+.+|+++--+.|....-...++.|+.+.|+|..|.+.|+
T Consensus 606 gdksqafq~~ydsyryfp~nie~iewl~ayyidtqf-~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF-SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred cchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 777777777777777777777777777766666666 6777777777766777666555666667777777777777777
Q ss_pred HHHhhCCC
Q 013821 417 QFQQVAPI 424 (436)
Q Consensus 417 ~al~l~p~ 424 (436)
+.....|.
T Consensus 685 ~~hrkfpe 692 (840)
T KOG2003|consen 685 DIHRKFPE 692 (840)
T ss_pred HHHHhCcc
Confidence 66665554
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=9.7e-16 Score=153.62 Aligned_cols=233 Identities=14% Similarity=0.047 Sum_probs=198.2
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-ESWMQYAKLVWE 278 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 278 (436)
.....|.+....|+++.|.+.+.++.+..|+....+...|.++..+|++++|..++.++.+..|++. .+...++.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3345677888899999999999999999998888889999999999999999999999999999975 566777988888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------------------
Q 013821 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------------------------- 330 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------------- 330 (436)
.++ +++|...+++.++..|+++.++..++.++...|+++++...+....+.
T Consensus 166 ~~~-~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 166 QNE-LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 875 999999999999999999999999999999999999888877633311
Q ss_pred --------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 013821 331 --------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIM--SQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 331 --------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~d~~eA~~~~~ 382 (436)
..+...|++++|++.++++++..|++.... ..........++ ...+++.++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e 323 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED-NEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC-hHHHHHHHH
Confidence 678888999999999999999999987532 222223333455 899999999
Q ss_pred HHHHhCCCCH--HHHHHHHHHHHHCCChHHHHHHHH--HHHhhCCCChhHHhhhhh
Q 013821 383 RAVQASPADS--HVLAAYACFLWETEEDEDDSKSSD--QFQQVAPIRQGAVTTANV 434 (436)
Q Consensus 383 ~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~--~al~l~p~~~~~~~~a~~ 434 (436)
++++.+|+++ .++..+|+++++.|++++|.++|+ ++++..|+.......+.+
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADA 379 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHH
Confidence 9999999999 889999999999999999999999 577788877665554444
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-16 Score=156.07 Aligned_cols=202 Identities=16% Similarity=0.203 Sum_probs=183.2
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
...+|.-|+.++..+++ .++.+|++.|..+.-.|+.++|+..|.+|-++-|..-.-.+.+|.-|..++++.-|..+|.+
T Consensus 327 k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 44567788899999999 89999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C---HHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ----D---SNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
|+.+.|.++.++..+|.+.+..+ +|.+|+.+|++++..-+. . ...+.++|
T Consensus 406 A~ai~P~Dplv~~Elgvvay~~~-~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG---------------------- 462 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGVVAYTYE-EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG---------------------- 462 (611)
T ss_pred HHhcCCCcchhhhhhhheeehHh-hhHHHHHHHHHHHHHhhhccccccchhHHHHhHH----------------------
Confidence 99999999999999999988876 599999999999954332 2 34478889
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.++.+++.+++|+.+|+++|.+.|.++.++..+|.++..+|+ ++.|+++|.++|.+.|++..+-..|+.+...
T Consensus 463 H~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-ld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 463 HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-LDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-hHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999999 9999999999999999997776666655443
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.74 E-value=3.3e-16 Score=150.05 Aligned_cols=206 Identities=14% Similarity=0.022 Sum_probs=155.4
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...+...+..++.+++ +++.+|..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|++.|++
T Consensus 79 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 79 LRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34467778999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
+++.+|+++.....+ .+.. ..+++++|+..|.+++...+.+ .|. ++.+...+|+...+ .
T Consensus 158 al~~~P~~~~~~~~~-~l~~-~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~----------------~ 216 (296)
T PRK11189 158 FYQDDPNDPYRALWL-YLAE-SKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE----------------T 216 (296)
T ss_pred HHHhCCCCHHHHHHH-HHHH-ccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH----------------H
Confidence 999999998432222 1222 3346999999998877654322 222 34222222221100 0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCC
Q 013821 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP-ADSHVLAAYACFLWETE 406 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g 406 (436)
.++.+.+.++.++++.|...++|+++|.++..+|+ +++|+.+|+++++.+| ++++..+.+..+....+
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-LDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 12222333344456677888999999999999999 9999999999999997 66666665555554433
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=7.2e-16 Score=158.49 Aligned_cols=253 Identities=17% Similarity=0.181 Sum_probs=215.2
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD--SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
.+..+|..+-.++- ....-|..-+..+...++ ++.|.+.|...+...|++..+++..|.+.+..|+|..|+.+|+++
T Consensus 112 ~at~~~~~A~ki~m-~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~a 190 (1018)
T KOG2002|consen 112 KATLLFDLADKIDM-YEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKA 190 (1018)
T ss_pred HHHHHhhHHHHhhc-cCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 56677777777666 344455555555555555 499999999999999999999999999999999999999999999
Q ss_pred HHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc---hHHHHHHHHHHHH----
Q 013821 259 TMADPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD---GEDDKAQEEHIQV---- 330 (436)
Q Consensus 259 l~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~---- 330 (436)
+.++|. -+.....+|.|++.++. .+.|+..|+++++++|.++.++..||.+.....+. ..+...+.+.+..
T Consensus 191 l~inp~~~aD~rIgig~Cf~kl~~-~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 191 LRINPACKADVRIGIGHCFWKLGM-SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred HhcCcccCCCccchhhhHHHhccc-hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence 999998 46778889999999986 99999999999999999999999999887776654 4555555555544
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHH
Q 013821 331 --------LPIQSKGDLEGAEEYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAY 398 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~-~~~~~~l 398 (436)
..++-.|+|+.+......++...-. -++.++.+|+++..+|+ |++|..+|.++++.+|++ ...+..+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd-~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD-FEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHccCCCCccccccch
Confidence 6677789999999999999987633 35679999999999999 999999999999999998 7788999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhcC
Q 013821 399 ACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVYA 436 (436)
Q Consensus 399 a~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~ya 436 (436)
|+.++..|+.+.|+.+|++++...|+..+... .+-+||
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 99999999999999999999999999887665 666654
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.70 E-value=2.6e-15 Score=150.36 Aligned_cols=223 Identities=19% Similarity=0.172 Sum_probs=190.2
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------- 261 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 261 (436)
...+...++..+...|+|+.|+..++.+++. .|.-......+|.+|..++++.+|+..|++|+.+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3466677999999999999999999999998 5655566667999999999999999999999986
Q ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--
Q 013821 262 -DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-- 330 (436)
Q Consensus 262 -~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 330 (436)
+|.-+.++.+||.+|...|+ +++|..++++|+++. |.-...+.+++.++...+++++|..++...++.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GK-f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGK-FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 44557789999999998886 999999999999874 233456678899999999999999999866665
Q ss_pred ------------------hHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 331 ------------------LPIQSKGDLEGAEEYFSRAILAN--------PGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 331 ------------------~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
.+|..+|+|++|.++|++|+.+. +.....+.++|..+.++++ +.+|...|.++
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~ 435 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEA 435 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 88999999999999999999884 3346788999999999988 99999999998
Q ss_pred HHhC----C---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 385 VQAS----P---ADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 385 l~~~----p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
+.+. | +-...+.+|+.+|..+|++++|+++..+++..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 7653 3 33478899999999999999999999998854
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.70 E-value=2.3e-15 Score=138.79 Aligned_cols=217 Identities=13% Similarity=0.087 Sum_probs=189.5
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.-...+|.-++..|++.+|+..|..+++.+|++..+++..|.+|..+|+-..|+..+.+++++.|+...+....|.++.+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 34455677777779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 279 LHRDQHRALTYFERAALAAPQDSNI---LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+|. +++|+..|+++++-+|.+... .-.++.+... ..... .+ ..+...|++..|+++....|++.|=
T Consensus 119 ~Ge-le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~-------~~l~~-ql--~s~~~~GD~~~ai~~i~~llEi~~W 187 (504)
T KOG0624|consen 119 QGE-LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH-------WVLVQ-QL--KSASGSGDCQNAIEMITHLLEIQPW 187 (504)
T ss_pred ccc-HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH-------HHHHH-HH--HHHhcCCchhhHHHHHHHHHhcCcc
Confidence 986 999999999999999965433 3333311111 00000 00 4566789999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
++..+...+.||...|+ ...|+..++.+-.+..++.+.++.++.+++..|+.+.++...+.+|.++|++..
T Consensus 188 da~l~~~Rakc~i~~~e-~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGE-PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred hhHHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 99999999999999999 999999999999999999999999999999999999999999999999998754
No 50
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=1.5e-14 Score=154.10 Aligned_cols=248 Identities=13% Similarity=0.018 Sum_probs=186.5
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+..+|..++.++..-.+ ........+|.++...|++++|+++|+++++.+|+++.++..++.++...++.++|++.+++
T Consensus 83 ~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 83 RDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred CcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 45578888888883333 34455566688999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH---------
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI--------- 328 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--------- 328 (436)
+...+|.+... ..++.++...++ ..+|++.|+++++.+|++..++..+..++...|-...|.+++.++.
T Consensus 162 l~~~dp~~~~~-l~layL~~~~~~-~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~ 239 (822)
T PRK14574 162 LAERDPTVQNY-MTLSYLNRATDR-NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYR 239 (822)
T ss_pred hcccCcchHHH-HHHHHHHHhcch-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHH
Confidence 99999996655 556666655554 7679999999999999999999999999999988777776665110
Q ss_pred ---------------------------------------HH---------------------------------------
Q 013821 329 ---------------------------------------QV--------------------------------------- 330 (436)
Q Consensus 329 ---------------------------------------~~--------------------------------------- 330 (436)
..
T Consensus 240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~ 319 (822)
T PRK14574 240 QLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00
Q ss_pred -------------------------------------------------------hHHHHcCCHHHHHHHHHHHHHhCC-
Q 013821 331 -------------------------------------------------------LPIQSKGDLEGAEEYFSRAILANP- 354 (436)
Q Consensus 331 -------------------------------------------------------~~~~~~g~~~~A~~~~~~al~~~p- 354 (436)
..+...++|++|..++++..+..|
T Consensus 320 ~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 320 AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 223334455555555555544222
Q ss_pred --------------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 355 --------------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 355 --------------~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
+..++...++.++...|+ +.+|++.+++.+...|.++.++..+|.++...|.+.+|.+.++.++.
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd-l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALND-LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 234455666777777777 77777777777777777777777777777777777777777777777
Q ss_pred hCCCChhHH
Q 013821 421 VAPIRQGAV 429 (436)
Q Consensus 421 l~p~~~~~~ 429 (436)
++|......
T Consensus 479 l~P~~~~~~ 487 (822)
T PRK14574 479 LAPRSLILE 487 (822)
T ss_pred hCCccHHHH
Confidence 777654433
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=4.8e-15 Score=137.29 Aligned_cols=179 Identities=15% Similarity=0.062 Sum_probs=140.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 013821 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN--- 302 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~--- 302 (436)
+..+..++.+|..+...|++++|+..|++++..+|.++ .+++.+|.++...++ +++|+..|+++++..|+++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD-YAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCchHH
Confidence 44567788888888888888888888888888877765 567788888777764 88888888888888887665
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHH
Q 013821 303 ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM-----------------SQYAK 365 (436)
Q Consensus 303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~ 365 (436)
+++.+|.++..... .++...|++++|++.|++++..+|++..++ ..+|.
T Consensus 109 a~~~~g~~~~~~~~--------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 174 (235)
T TIGR03302 109 AYYLRGLSNYNQID--------------RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVAR 174 (235)
T ss_pred HHHHHHHHHHHhcc--------------cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677744433210 223344889999999999999999986543 36788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821 366 LVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 366 ~~~~~g~d~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 423 (436)
+++..|+ +.+|+..|++++...|+. ..++..+|.++..+|++++|+.+++......|
T Consensus 175 ~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 175 FYLKRGA-YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHcCC-hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8899999 999999999999997764 58999999999999999999999888776655
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.68 E-value=8.3e-15 Score=135.69 Aligned_cols=187 Identities=14% Similarity=0.082 Sum_probs=152.8
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE---SWM 270 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 270 (436)
....+..+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 446778888888889999999999999999999876 68899999999999999999999999999998765 789
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821 271 QYAKLVWEL--------HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 271 ~la~~~~~~--------~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
.+|.++... + ++++|++.|+++++.+|++..++..+..+....+..... . .....++...|++.+|
T Consensus 112 ~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~----~-~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGK----E-LYVARFYLKRGAYVAA 185 (235)
T ss_pred HHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHcCChHHH
Confidence 999998875 4 489999999999999999877664443322211111000 0 0001778899999999
Q ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 343 EEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 343 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
+..|++++...|+. +.+++.+|.++..+|+ +++|..+++......|+
T Consensus 186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 186 INRFETVVENYPDTPATEEALARLVEAYLKLGL-KDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Confidence 99999999997764 6899999999999999 99999998887766553
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=1.6e-15 Score=129.32 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=77.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821 218 EEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 218 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
..+|+++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..+|..+|.++...++ +++|+..|+++++++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE-YTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcC
Confidence 34566666666543 44556666666666666666666666666666666666666666553 666666666666666
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (436)
|+++.+++++| .++...|++++|+..|++++++.|+++..+.+++.+...
T Consensus 89 p~~~~a~~~lg----------------------~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTG----------------------VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 66666666666 555566666666666666666666666666666655543
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=3.2e-14 Score=142.05 Aligned_cols=227 Identities=12% Similarity=0.069 Sum_probs=185.2
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNY-AQLLQKKGDLYRAEDYYNHATMADPGDGESW-MQYAKLVW 277 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~ 277 (436)
.....|.+....|++++|++.+.+..+..+ ++..++.+ +.+....|+++.|..+|.++.+.+|++.... ...+.++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 334566777778999999988887666543 34444444 6666999999999999999999999986444 34477777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------------------------
Q 013821 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------------- 330 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------------- 330 (436)
..+ ++++|+..++++++..|+++.++..++.++...|+++++..++....+.
T Consensus 165 ~~g-~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 165 ARN-ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776 5999999999999999999999999999999999999998655522210
Q ss_pred ---------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821 331 ---------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 331 ---------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~ 383 (436)
..+...|+.++|...++++++. +.++.....++.+ ..++ .+++++.+++
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~-~~~al~~~e~ 319 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNN-PEQLEKVLRQ 319 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCC-hHHHHHHHHH
Confidence 6677889999999999999995 4456655555554 3366 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhh
Q 013821 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTA 432 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~a 432 (436)
.++.+|+++..+..+|.++...+++++|.++|++++++.|+...-...+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La 368 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLA 368 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999876644433
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.7e-16 Score=147.29 Aligned_cols=252 Identities=12% Similarity=0.020 Sum_probs=210.9
Q ss_pred cccchhhhcCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 013821 169 LNGIGEEIERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL 248 (436)
Q Consensus 169 ~~~~~~~~~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 248 (436)
.+.+..+ ..+.++...+..++.+.+ ++...|.+.+.+++..|++++|.-.+++.++++|.....+...++++..+++.
T Consensus 56 gn~~yk~-k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQ-KTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHH-hhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHH
Confidence 3444333 378889999999999999 78999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHHHHHHH------------Hh------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 249 YRAEDYYNHAT------------MA------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 249 ~~A~~~~~~al------------~~------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
.+|.+.++..- .+ .|....+....+.|+...+ ++++|...--..+++++.+.++++..|.+
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~-~~~~a~~ea~~ilkld~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG-DYDEAQSEAIDILKLDATNAEALYVRGLC 212 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc-cchhHHHHHHHHHhcccchhHHHHhcccc
Confidence 87776655221 00 1223345555666766666 48888888888888888888888888888
Q ss_pred HHHccCchHHHHHHHHHHHH------------------------hHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 013821 311 LWEMEDDGEDDKAQEEHIQV------------------------LPIQSKGDLEGAEEYFSRAILANPGD----GEIMSQ 362 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~------------------------~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~ 362 (436)
++..++.+.++..+++.+.. .-.++.|+|.+|.++|..+|.++|++ +..|.+
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 88888888888888755544 66778999999999999999999985 567899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 363 la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
++.+...+|+ ..+|+..++.++.++|...+++...|.++..++++++|++.|+++++....
T Consensus 293 ra~v~~rLgr-l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 293 RALVNIRLGR-LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hHhhhcccCC-chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999 999999999999999999999999999999999999999999999998654
No 56
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=9.9e-15 Score=144.34 Aligned_cols=244 Identities=18% Similarity=0.186 Sum_probs=215.4
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+++.+..++.++....+ ....|+.-.++..-+++.++|+.+++++++..|+....|+.+|+++.++++.+.|.+.|.
T Consensus 632 ~e~eraR~llakar~~sg--TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 632 DELERARDLLAKARSISG--TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred ccHHHHHHHHHHHhccCC--cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 466678888888887554 467899889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013821 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------ 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 330 (436)
..++..|.....|..++.+-...++ .-+|...++++.-.+|++...|.....+..+.|+.+.|...+.++++.
T Consensus 710 ~G~k~cP~~ipLWllLakleEk~~~-~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 710 QGTKKCPNSIPLWLLLAKLEEKDGQ-LVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred hccccCCCCchHHHHHHHHHHHhcc-hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence 9999999999999999999888875 999999999999999999999999999999999999999888888876
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 331 ------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
++.-+-++ ...+..||+....++.++..+|.+++...+ +++|.++|.+++.++|+++++|..+-.++..
T Consensus 789 LWaEaI~le~~~~r----kTks~DALkkce~dphVllaia~lfw~e~k-~~kar~Wf~Ravk~d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSEKK-IEKAREWFERAVKKDPDNGDAWAWFYKFELR 863 (913)
T ss_pred hHHHHHHhccCccc----chHHHHHHHhccCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHccCCccchHHHHHHHHHHH
Confidence 11112222 233445666677889999999999999999 9999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCChhH
Q 013821 405 TEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 405 ~g~~~eA~~~~~~al~l~p~~~~~ 428 (436)
.|..++-.++|.++..-.|.|...
T Consensus 864 hG~eed~kev~~~c~~~EP~hG~~ 887 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKCETAEPTHGEL 887 (913)
T ss_pred hCCHHHHHHHHHHHhccCCCCCcH
Confidence 999999999999999999988763
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-14 Score=137.12 Aligned_cols=232 Identities=15% Similarity=0.142 Sum_probs=188.3
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHH----------------------------------HHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNY----------------------------------AQL 241 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l----------------------------------a~~ 241 (436)
.+..-++.+|.+++..|++.+|+..|+++.-++|.+....-.+ +..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 5667778888999999999999999999988888765443333 444
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
.+..+++..|+.+-+++|..+|.+..++...|.++...++ .++|+-.|+.|..+.|.+.+.+..+..+|...|.+.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R-~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER-HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc-hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 4555566677777788888888888888888888888776 888888888888888888888888888888888888877
Q ss_pred HHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 322 KAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 322 ~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
-.....++. .++....--++|.+.++++|+++|....+...+|.++...|. +..++.++++++..
T Consensus 389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~-~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP-TKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc-cchHHHHHHHHHhh
Confidence 777665554 122223345789999999999999999999999999999999 99999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 388 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
.|+ ...+..||.++...+.+++|..+|..++.++|+...+..
T Consensus 468 ~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 468 FPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred ccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 998 457889999999999999999999999999998776543
No 58
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.67 E-value=2.7e-14 Score=153.98 Aligned_cols=146 Identities=12% Similarity=0.011 Sum_probs=133.9
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.++.++...+.....+++ ....++..+|.++...|++++|+.+|+++++.+|.++.++..++.++...|++++|+..++
T Consensus 29 g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred CCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 467788888888877777 6778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
++++..|+++. +..+|.++...++ +++|+..|++++++.|++..++..++.++...+..++|+..++
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~~~g~-~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYKRAGR-HWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999 9999999998875 9999999999999999999999999999988888776665554
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=2.4e-15 Score=128.14 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=114.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013821 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
..+|+++++++|++ +..+|.++...|+ +++|+.+|++++.++|.+..++..+| .
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg----------------------~ 66 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGD-YSRAVIDFSWLVMAQPWSWRAHIALA----------------------G 66 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH----------------------H
Confidence 46789999999885 5678888888875 99999999999999999999999999 8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
++...|++++|+..|++++.++|+++.+++++|.++..+|+ +++|+..|++++.+.|+++..+..++.+...+
T Consensus 67 ~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~-~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 67 TWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE-PGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999 99999999999999999999998888776543
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.7e-14 Score=129.44 Aligned_cols=227 Identities=15% Similarity=0.093 Sum_probs=147.8
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAE 252 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~ 252 (436)
+|+.|.-.|..-+..++ ....+..-+|+++...|+.+.|+.+-+..+. .|+.+ .++..+|.-|...|-++.|.
T Consensus 50 Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 50 QPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred CcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 55555555555555555 4555555666666666666666655444333 23221 44555666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013821 253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
..|........--..++..|..+|.... +|++|++.-++..++.++...+ .++.+|+++. ..
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k~~~q~~~~--eIAqfyCELA---------------q~ 189 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATR-EWEKAIDVAERLVKLGGQTYRV--EIAQFYCELA---------------QQ 189 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCCccchh--HHHHHHHHHH---------------HH
Confidence 6665555444444555555555554443 4666666666666665553322 1222222221 55
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCChHHH
Q 013821 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-HVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA 411 (436)
+....++++|+..+++|++.+|++..+-..+|.+....|+ |+.|++.++.+++.+|+.. .+.-.|..+|.++|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~-y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD-YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc-hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5566788888999999999999888888889999988888 9999999999988888864 6778888889999999888
Q ss_pred HHHHHHHHhhCCCC
Q 013821 412 SKSSDQFQQVAPIR 425 (436)
Q Consensus 412 ~~~~~~al~l~p~~ 425 (436)
+..+.++.+..+..
T Consensus 269 ~~fL~~~~~~~~g~ 282 (389)
T COG2956 269 LNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHccCCc
Confidence 88888888776543
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=4.9e-14 Score=138.69 Aligned_cols=204 Identities=16% Similarity=0.075 Sum_probs=169.7
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
+++.++..+|.++...|+.+++...+.++.+..|.+ .......+.++...|++++|...++++++.+|.+..++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~- 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL- 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-
Confidence 667788888888888999999999999999887754 4667788999999999999999999999999999987775
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH
Q 013821 273 AKLVWELHR---DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRA 349 (436)
Q Consensus 273 a~~~~~~~~---d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 349 (436)
+..++..+. ....+.+.+.......|.....+..++ .++..+|++++|+..++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a----------------------~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA----------------------FGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHH
Confidence 545444442 234444444443345566667777778 8888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821 350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 423 (436)
++++|+++.++..+|.+++..|+ +++|+.++++++...|.++ ..+..++.++...|++++|+..|++++...|
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGR-FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999 9999999999999887433 3566899999999999999999999987665
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=2.4e-15 Score=137.82 Aligned_cols=220 Identities=15% Similarity=0.101 Sum_probs=183.4
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
-|.+++-.++..+.--+ .++.+..+..+|.+..+...|+..|.+.++..|.+...+...+.++..++++++|.++|+.
T Consensus 238 m~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred ChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 34455555655554333 3567788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++++|.+.++...+|.-|+.-++ .+-|+.+|++.+++.-.+++.+.++|.|....++++-++..+.+++..
T Consensus 316 vlk~~~~nvEaiAcia~~yfY~~~-PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYFYDNN-PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred HHhcCCccceeeeeeeeccccCCC-hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 888888888888888877777765 888888888888888888888888888888888888888777766655
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 331 --------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.+....||+.-|..+|+-+|..++++.+++++||.+-.+.|+ .++|..++..|-...|+-.+..++++.+
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD-ILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-hHHHHHHHHHhhhhCccccccccceeEE
Confidence 445567999999999999999999999999999999999999 9999999999999999988877777644
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.62 E-value=9.2e-14 Score=140.19 Aligned_cols=210 Identities=18% Similarity=0.203 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
..+++..++++++.+|.|+.+.++++.-|..+++.+.|.++.++++++++. ++.+|..++.++...++ +.+|+...+.
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr-~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR-LKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh-hHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999655 78999999999888875 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHH-------------------------------------------
Q 013821 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ------------------------------------------- 329 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------------------------------- 329 (436)
++.-.|+|.........+....++.++++..+...+.
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 9998888665555555555555555555444431110
Q ss_pred ------------------------------------------------------------H------------hHHHHcC
Q 013821 330 ------------------------------------------------------------V------------LPIQSKG 337 (436)
Q Consensus 330 ------------------------------------------------------------~------------~~~~~~g 337 (436)
. .++...|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 0 5666778
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC--YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 415 (436)
++.+|.+.|..|+.++|+++.....+|.++.+.|+ ..-|.. ++..+++++|.++++|+.+|.++.++|+.++|.++|
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999999999999999999999999999999998 777777 999999999999999999999999999999999999
Q ss_pred HHHHhhCCCC
Q 013821 416 DQFQQVAPIR 425 (436)
Q Consensus 416 ~~al~l~p~~ 425 (436)
.-++++.+..
T Consensus 778 ~aa~qLe~S~ 787 (799)
T KOG4162|consen 778 QAALQLEESN 787 (799)
T ss_pred HHHHhhccCC
Confidence 9999987543
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.8e-14 Score=132.98 Aligned_cols=215 Identities=16% Similarity=0.191 Sum_probs=180.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH------------------
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA------------------ 273 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la------------------ 273 (436)
.-+.-+..++-.-...-|++...+..+|.+++..|++.+|+..|+++.-++|......-.+|
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence 33445555666667788999999999999999999999999999999999998744433333
Q ss_pred ----------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821 274 ----------------KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 274 ----------------~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
.++|..+ ++..|+.+-+++|+.+|.+..++...|.++..+++.++|.-+++.+...
T Consensus 292 Lf~~~~~ta~~wfV~~~~l~~~K-~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 292 LFAKVKYTASHWFVHAQLLYDEK-KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred HHhhhhcchhhhhhhhhhhhhhh-hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 3334443 4788999999999999999999999999999999999999888865543
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA-KLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.+|...|++.+|...-+.+++.-|.++.++..+| .++...-.--++|.+.+++++.+.|....+...++.++..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999987 5554322214899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCChh
Q 013821 405 TEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 405 ~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
.|.+++++..+++.+...|+-.-
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D~~L 473 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPDVNL 473 (564)
T ss_pred hCccchHHHHHHHHHhhccccHH
Confidence 99999999999999999887544
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=4.4e-14 Score=126.87 Aligned_cols=124 Identities=12% Similarity=0.149 Sum_probs=95.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013821 245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
.++.++++..++++++.+|++...|..+|.++...++ +++|+..|+++++++|++..++..+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~-~~~A~~a~~~Al~l~P~~~~~~~~lA---------------- 114 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND-YDNALLAYRQALQLRGENAELYAALA---------------- 114 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------
Confidence 5666777778888888888888888888877777764 88888888888888888888888877
Q ss_pred HHHHHHhH-HHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 325 EEHIQVLP-IQSKGD--LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 325 ~~~~~~~~-~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
.+ +...|+ +++|...++++++.+|++..+++++|.++...|+ +++|+.+|++++++.|.+.
T Consensus 115 ------~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~-~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 115 ------TVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD-YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred ------HHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCc
Confidence 43 345555 4788888888888888888888888888888887 8888888888888777654
No 66
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.60 E-value=9.2e-14 Score=124.80 Aligned_cols=121 Identities=12% Similarity=0.119 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+.++++..++++++.+|++...|..+| .+|...|++++|+..|+++++++|+++.++.
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg----------------------~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~ 111 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLG----------------------EYYLWRNDYDNALLAYRQALQLRGENAELYA 111 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 467777777777777777777777777 7777777777777777777777777777777
Q ss_pred HHHHHH-HHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 362 QYAKLV-WELHHD-HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 362 ~la~~~-~~~g~d-~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
.+|.++ ...|+- +++|+..++++++.+|+++.++..+|..+.+.|++++|+..+++++++.|.
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 777765 444441 377777777777777777777777777777777777777777777777654
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.60 E-value=2.9e-13 Score=144.41 Aligned_cols=197 Identities=13% Similarity=0.091 Sum_probs=169.7
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+......+.+.++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|........+|.+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 56677788888999999999999999999999999965545899999999999999999999994444455555556878
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...+ ++++|++.|+++++.+|+++.++..++ .++...++.++|++.+++++..+|.
T Consensus 112 y~~~g-dyd~Aiely~kaL~~dP~n~~~l~gLa----------------------~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 112 YRNEK-RWDQALALWQSSLKKDPTNPDLISGMI----------------------MTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHH----------------------HHHhhcCCHHHHHHHHHHhcccCcc
Confidence 88877 599999999999999999999998888 8888899999999999999999998
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 417 (436)
+... ..++.++..+++ ..+|+..++++++.+|++..++..+..++.+.|-...|.+..++
T Consensus 169 ~~~~-l~layL~~~~~~-~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 169 VQNY-MTLSYLNRATDR-NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred hHHH-HHHHHHHHhcch-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 5554 556666666677 77799999999999999999999999999999999988766554
No 68
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.6e-13 Score=132.29 Aligned_cols=109 Identities=12% Similarity=0.097 Sum_probs=103.4
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
...|+..+..|+++.|+.+|..+|.++|.+...|.+...+|..+|+|++|+..-.+.++++|.-+..|..+|..+..+|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 34678888999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 282 DQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
|++|+..|.+.|+.+|++..++..++.++
T Consensus 86 -~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 -YEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred -HHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999998888776
No 69
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=8.7e-13 Score=130.76 Aligned_cols=242 Identities=14% Similarity=0.122 Sum_probs=201.5
Q ss_pred HHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821 183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 262 (436)
..+--.|+++...+.-..|+..+..+.+.+-++-|+..|..+++.+|....+|...+.+-..-|..+.-..++++++...
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 34445555665544558899999999999999999999999999999999999999888888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------h
Q 013821 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----------L 331 (436)
Q Consensus 263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------~ 331 (436)
|.....|..++.-++..| |...|...+.++++.+|++.++|+.-..+......++.|..++.++... .
T Consensus 581 pkae~lwlM~ake~w~ag-dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAG-DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSAN 659 (913)
T ss_pred CcchhHHHHHHHHHHhcC-CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhH
Confidence 999999999999888886 6999999999999999999999988888888888888888888865544 5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q 013821 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 411 (436)
+...+++.++|+.+++++|+..|+....|..+|+++.++++ .+.|...|...+...|.....|..++.+-.+.|..-.|
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~-ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN-IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH-HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 55567888888888888888888888888888888888888 88888888888877777777777777777777777777
Q ss_pred HHHHHHHHhhCCCCh
Q 013821 412 SKSSDQFQQVAPIRQ 426 (436)
Q Consensus 412 ~~~~~~al~l~p~~~ 426 (436)
...+.++.-.+|+..
T Consensus 739 R~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 739 RSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHHHHhcCCCcc
Confidence 777777777776543
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.59 E-value=1.5e-13 Score=144.07 Aligned_cols=158 Identities=14% Similarity=0.048 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
.+++.-+.......|++++++++||.+....|++++|..++++++++.|++..++..++.++.+.++ +++|+..+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l 147 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYF 147 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHh
Confidence 4455555556667899999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH
Q 013821 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~ 374 (436)
..+|++..+++.+| .++.+.|++++|+.+|++++..+|+++.++..+|.++..+|+ .
T Consensus 148 ~~~p~~~~~~~~~a----------------------~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~ 204 (694)
T PRK15179 148 SGGSSSAREILLEA----------------------KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-L 204 (694)
T ss_pred hcCCCCHHHHHHHH----------------------HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-H
Confidence 99999999999999 888899999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 013821 375 DKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 375 ~eA~~~~~~al~~~p~~~~~~~ 396 (436)
++|...|+++++...+-...+.
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 205 WRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999998766555443
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.59 E-value=2.1e-13 Score=136.79 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=167.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 013821 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-- 297 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-- 297 (436)
.|.-..+...++..|..+|+|++|+..+++++.. .|.-......+|.+|..+++ +.+|+..|++|+.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k-~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK-YDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHH
Confidence 4656677888999999999999999999999998 55556666679999999986 999999999999873
Q ss_pred ------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------------hHHHHcCCHHHHHHHHHHHHH
Q 013821 298 ------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------LPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 298 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~~g~~~~A~~~~~~al~ 351 (436)
|.-..++.+|+.+|...|++++|...++.++.. .++..++++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445677899999999999999999999977766 778889999999999999998
Q ss_pred hC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821 352 AN--------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--------PADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 352 ~~--------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~ 415 (436)
+. +.-+..+.+||.+|..+|+ +.+|.++|++|+++. +.....+.++|..+.+.+++.+|.+.|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGK-YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 72 2346789999999999999 999999999999874 334578899999999999999999999
Q ss_pred HHHHhhC
Q 013821 416 DQFQQVA 422 (436)
Q Consensus 416 ~~al~l~ 422 (436)
.++..+.
T Consensus 433 ~~~~~i~ 439 (508)
T KOG1840|consen 433 EEAKDIM 439 (508)
T ss_pred HHHHHHH
Confidence 9988764
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=7.2e-13 Score=135.89 Aligned_cols=237 Identities=18% Similarity=0.201 Sum_probs=193.0
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+.++|...+...+..++ .+..+|.-||.++.++|+.+++...+-.|-.++|.+.+.|..++....++|++.+|+-+|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 456678888888889999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCchHHHHHHH------
Q 013821 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-----SNILAAYACFLWEMEDDGEDDKAQE------ 325 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~------ 325 (436)
+|++.+|.+....+..+.+|.++| ++..|...|.+++.+.|.. .+.....+..+...++.+.|.+.++
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 999999999999999999988887 5999999999999999821 1111222333333333333333332
Q ss_pred --------------------------------------------------------------------------------
Q 013821 326 -------------------------------------------------------------------------------- 325 (436)
Q Consensus 326 -------------------------------------------------------------------------------- 325 (436)
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence
Q ss_pred -------------------------------HHHHH------------------------------hHHHHcCCHHHHHH
Q 013821 326 -------------------------------EHIQV------------------------------LPIQSKGDLEGAEE 344 (436)
Q Consensus 326 -------------------------------~~~~~------------------------------~~~~~~g~~~~A~~ 344 (436)
+++.. .+|..+|.+++|++
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 11111 89999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCChHHHHHHH
Q 013821 345 YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---------SHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 345 ~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~eA~~~~ 415 (436)
+|++++...|++.++...|+.++.++|+ .++|.+.++....-++.+ ..+...+..++.+.|+.++=+..-
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~-~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGN-HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCC-HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999 999999998866333222 256678888999999988855443
Q ss_pred H
Q 013821 416 D 416 (436)
Q Consensus 416 ~ 416 (436)
.
T Consensus 550 ~ 550 (895)
T KOG2076|consen 550 S 550 (895)
T ss_pred H
Confidence 3
No 73
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.57 E-value=3.9e-13 Score=120.75 Aligned_cols=179 Identities=17% Similarity=0.123 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
...+...+-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+..++..+|...+..++ |.+|+..++++
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~-~~~A~~~~rkA 126 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN-FGEAVSVLRKA 126 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Confidence 344666677777788888888 8888888899988888888888888888888888888888888875 89999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 013821 294 ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD 373 (436)
Q Consensus 294 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d 373 (436)
..+.|++..+|..+| .+|.+.|+++.|...|.+++++.|.++.+..|+|..+.-.|+
T Consensus 127 ~~l~p~d~~~~~~lg----------------------aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd- 183 (257)
T COG5010 127 ARLAPTDWEAWNLLG----------------------AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD- 183 (257)
T ss_pred hccCCCChhhhhHHH----------------------HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC-
Confidence 999999999999998 888888999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821 374 HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 374 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 417 (436)
++.|..++..+....+.+..+..+++.+...+|++++|.+.-.+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 89999999988888888888888999999899998888776543
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.56 E-value=4.9e-13 Score=140.25 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=136.4
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013821 256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
.......|.++.+++.||.+....++ +++|+..++.++++.|++..++..++ .++.+
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~-~~ea~~~l~~~~~~~Pd~~~a~~~~a----------------------~~L~~ 132 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHR-SDEGLAVWRGIHQRFPDSSEAFILML----------------------RGVKR 132 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCcHHHHHHHH----------------------HHHHH
Confidence 33345578999999999999999986 99999999999999999999999999 89999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 415 (436)
.+++++|+..+++++..+|+++.+++.+|.++.++|+ +++|+.+|++++..+|++..++..+|.++...|+.++|...|
T Consensus 133 ~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 133 QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ-SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhhC
Q 013821 416 DQFQQVA 422 (436)
Q Consensus 416 ~~al~l~ 422 (436)
+++++..
T Consensus 212 ~~a~~~~ 218 (694)
T PRK15179 212 QAGLDAI 218 (694)
T ss_pred HHHHHhh
Confidence 9999875
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=6.4e-12 Score=115.58 Aligned_cols=227 Identities=16% Similarity=0.117 Sum_probs=184.3
Q ss_pred hcCCCChHHHHHhhcCCCCCCch----------------------hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHH
Q 013821 176 IERPVSPPMYLAMGLGISVPGFD----------------------DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL 233 (436)
Q Consensus 176 ~~~p~~a~~~~~~~~~~~~~~~~----------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 233 (436)
+.+|..-++.+..|.-++.++.. -+...+|.-|+..|-++.|+..|...++...--..
T Consensus 63 ~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~ 142 (389)
T COG2956 63 QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEG 142 (389)
T ss_pred hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHH
Confidence 35777788888877766665332 45667889999999999999999999887666668
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++..+..+|....+|++|++..++..++.+.. +..+..+|..+.... +++.|+..+.+|++.+|+...+-..+|
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~-~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-DVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhCccceehhhhhh
Confidence 99999999999999999999999999998875 456777887766665 599999999999999999999999999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
.++...|+|++|++.++.+++.+|+. +++...|..+|.++|+ .++.+..+.++.+.
T Consensus 222 ----------------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~-~~~~~~fL~~~~~~ 278 (389)
T COG2956 222 ----------------------RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK-PAEGLNFLRRAMET 278 (389)
T ss_pred ----------------------HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHc
Confidence 77788888888888888888888875 5677788888888888 88888888888888
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 388 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
.+. +.+...++.......-.+.|..++.+-+...|...+
T Consensus 279 ~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 279 NTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred cCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 776 445566666666666677777777777777776444
No 76
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.55 E-value=4.4e-13 Score=141.70 Aligned_cols=220 Identities=13% Similarity=0.070 Sum_probs=185.9
Q ss_pred CCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----
Q 013821 191 GISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---- 266 (436)
Q Consensus 191 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---- 266 (436)
.+++ ....+|..+...+...+++++|++.++.+++.+|+...+|+.+|.++.+.+++.+|... +++...+.+.
T Consensus 25 ~~~p-~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSL-SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4445 67789999999999999999999999999999999999999999999999998877666 6666655554
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013821 267 ---------------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 267 ---------------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
.+++.+|.||-.+++ +++|...|+++++++|+++.++.++|..+... +.++|..++.+++ .
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~-~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV--~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNE-NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI--Y 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH--H
Confidence 899999999999986 99999999999999999999999999999999 9999999999999 4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--------HH------------HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQ--------YA------------KLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--------la------------~~~~~~g~d~~eA~~~~~~al~~~p~~ 391 (436)
.+...++|.++.++..+.+..+|++.+.+.. ++ ..|...++ |++++..++.+|+.+|.+
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~-~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED-WDEVIYILKKILEHDNKN 256 (906)
T ss_pred HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh-hhHHHHHHHHHHhcCCcc
Confidence 5777779999999999999999987665322 22 34445555 999999999999999999
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
..+...++.+|. +.|.. ...++..+.+
T Consensus 257 ~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 257 NKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred hhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 999999999987 33333 4444444444
No 77
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=9.4e-14 Score=131.20 Aligned_cols=231 Identities=14% Similarity=0.082 Sum_probs=192.3
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
...|+.+++..+|.+|+..|..+++..|+++..|.+.+.++...|++++|...+++.+.++|.........+.++..++.
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 34455677779999999999999999999999999999999999999999999999999999999988888888877763
Q ss_pred CHHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------h
Q 013821 282 DQHRALTYFERAA------------LAA------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------L 331 (436)
Q Consensus 282 d~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~ 331 (436)
..+|.+.|+..- .+- |.-..+....+.++...+++++|...--..++. .
T Consensus 133 -~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 -LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred -HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 666665554211 111 222344566788999999999988877655554 7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHH
Q 013821 332 PIQSKGDLEGAEEYFSRAILANPGDG------------EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVL 395 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~----~~~ 395 (436)
+++..++.+.|+..|+++|.++|++. +.|..-|.-.++.|+ +..|.++|..+|.++|++. ..|
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccccchhHHHH
Confidence 77788999999999999999999764 456777888899999 9999999999999999865 678
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhh
Q 013821 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANV 434 (436)
Q Consensus 396 ~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~ 434 (436)
.+++.+..++|+.++|+...+.++.++|.+..+.. .|+.
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887765 4444
No 78
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=1.2e-12 Score=124.87 Aligned_cols=205 Identities=15% Similarity=0.077 Sum_probs=187.8
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+.+..+|..++.-+. ....+.+++|..+..+|+.++|+.+|-+.-.+--+++++++.++.+|..+.+..+|++++.+
T Consensus 505 d~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 44567788888888777 67789999999999999999999999999888888999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
+..+-|.++.++..||.+|-+.| |-.+|.+++-......|.+.+..-.|+ ..|....
T Consensus 584 ~~slip~dp~ilskl~dlydqeg-dksqafq~~ydsyryfp~nie~iewl~----------------------ayyidtq 640 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEG-DKSQAFQCHYDSYRYFPCNIETIEWLA----------------------AYYIDTQ 640 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhccc-chhhhhhhhhhcccccCcchHHHHHHH----------------------HHHHhhH
Confidence 99999999999999999877765 699999999999999999999999999 7778888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
-+++|+.+|++|--+.|+.......++.|+.+.|+ |++|...|+..-...|.+.+.+.-|..+.-.+|-
T Consensus 641 f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn-yqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN-YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 89999999999999999988888999999999999 9999999999999999999988888888777663
No 79
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=3.1e-12 Score=114.04 Aligned_cols=177 Identities=19% Similarity=0.203 Sum_probs=160.2
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
-.+..+....|+.+.|..++++.....|....+....|..+...|++++|+++|+..++-+|.+..++...-.+.-.+|+
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 34455667789999999999999999999999999999999999999999999999999999999988887777777776
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
.-+|++.+...++..+.|.++|..++ .+|...|+|++|.-||++++-++|.++..+.
T Consensus 136 -~l~aIk~ln~YL~~F~~D~EAW~eLa----------------------eiY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 136 -NLEAIKELNEYLDKFMNDQEAWHELA----------------------EIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred -cHHHHHHHHHHHHHhcCcHHHHHHHH----------------------HHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 77999999999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 362 QYAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 362 ~la~~~~~~g~--d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.+|.+++-+|. ++.-|.++|.++++++|.+..+++.+-.+
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 99999988775 36789999999999999887777665544
No 80
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.52 E-value=1.2e-12 Score=126.75 Aligned_cols=158 Identities=15% Similarity=0.024 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|....+++..+..++..|++++|+..++..++..|+|+..+...+.++...++ ..+|++.+++++.++|+....+.++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk-~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK-AKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999986 99999999999999999999999999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~ 388 (436)
..+.+.|++++|+..+++.+..+|+++..|..||.+|..+|+ ..+|..
T Consensus 382 ----------------------~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~-~~~a~~--------- 429 (484)
T COG4783 382 ----------------------QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN-RAEALL--------- 429 (484)
T ss_pred ----------------------HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc-hHHHHH---------
Confidence 888889999999999999999999999999999999999998 555544
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCChh
Q 013821 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA-PIRQG 427 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~-p~~~~ 427 (436)
..+..|+..|++++|+..+.++.+.. .+|..
T Consensus 430 --------A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 430 --------ARAEGYALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred --------HHHHHHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 44555666667777777766666553 44443
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.51 E-value=7.5e-13 Score=111.45 Aligned_cols=117 Identities=19% Similarity=0.144 Sum_probs=80.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
+.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...++ +++|+.+|+++++.+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence 356667777777777777777777777777777777777777777777777777777666654 6677777777666666
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.+...++.+| .++...|++++|+..|+++++.+|++..
T Consensus 83 ~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAA----------------------ECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CChHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 6666666666 6666666666666666666666666544
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=1.2e-12 Score=110.25 Aligned_cols=117 Identities=19% Similarity=0.143 Sum_probs=88.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013821 253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
+.|++++..+|++..+.+.+|.++...++ +++|+..|++++..+|.+..++..+| .+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~la----------------------~~ 60 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR-YDEALKLFQLLAAYDPYNSRYWLGLA----------------------AC 60 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HH
Confidence 45677777777777777777777777664 77777777777777777777777777 66
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH 393 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~ 393 (436)
+...|++++|+.+|+++++.+|.++..++.+|.++...|+ +++|+..|+++++++|++..
T Consensus 61 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE-PESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccch
Confidence 6777777777777777777777777777777777777777 77777777777777777654
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.49 E-value=2.4e-13 Score=140.05 Aligned_cols=245 Identities=16% Similarity=0.105 Sum_probs=203.8
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHH-----------------------
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL----------------------- 234 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~----------------------- 234 (436)
+-..+...+-+++.+++ ..+.+|.-+|.+|...-+...|..+|+++.++++.+..+
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34466788899999999 899999999999999999999999999999999876544
Q ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 235 -------------LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 235 -------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~ 301 (436)
|..+|..|...+++..|+..|+.++..+|.+...|..+|.+|...|+ +.-|++.|.++..++|.+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhH
Confidence 44456666666777788888999999999999999999999999987 9999999999999999999
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHH---------------------------------------------------
Q 013821 302 NILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------------------------------------- 330 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------------------------------------- 330 (436)
...+..+......|++.+++..+...+..
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988888722222
Q ss_pred ------------------------------------------------------------------------hHHHH---
Q 013821 331 ------------------------------------------------------------------------LPIQS--- 335 (436)
Q Consensus 331 ------------------------------------------------------------------------~~~~~--- 335 (436)
.-|++
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHH
Confidence 11111
Q ss_pred -----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821 336 -----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 336 -----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 410 (436)
+.+-..|+.++++++++..++...|+.||.+ ...|+ +.-|..+|-+.+...|.....|.++|.++.+..+++.
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gn-va~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGN-VACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccch-hhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence 2233578888999998888888888888877 55577 8888888888888889888889999999999999999
Q ss_pred HHHHHHHHHhhCCCCh
Q 013821 411 DSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 411 A~~~~~~al~l~p~~~ 426 (436)
|...|.++..++|..-
T Consensus 869 A~~af~~~qSLdP~nl 884 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNL 884 (1238)
T ss_pred hhHHHHhhhhcCchhh
Confidence 9999999999888644
No 84
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.48 E-value=3.2e-12 Score=114.94 Aligned_cols=173 Identities=18% Similarity=0.157 Sum_probs=156.9
Q ss_pred HHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 186 LAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
+-......+ ++... .++...+...|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..++++..+.|.+
T Consensus 56 l~~~~~~~p-~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d 133 (257)
T COG5010 56 LGAAVLRNP-EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD 133 (257)
T ss_pred HHHHHhcCc-chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence 344444444 45555 6777788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013821 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
+++|..+|.+|.+.|+ +++|...|.+++++.|+++.+..++| ..+.-.|+++.|..+
T Consensus 134 ~~~~~~lgaaldq~Gr-~~~Ar~ay~qAl~L~~~~p~~~nNlg----------------------ms~~L~gd~~~A~~l 190 (257)
T COG5010 134 WEAWNLLGAALDQLGR-FDEARRAYRQALELAPNEPSIANNLG----------------------MSLLLRGDLEDAETL 190 (257)
T ss_pred hhhhhHHHHHHHHccC-hhHHHHHHHHHHHhccCCchhhhhHH----------------------HHHHHcCCHHHHHHH
Confidence 9999999999999985 99999999999999999999999999 888889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
+.++....+.+..+..+++.+...+|+ +++|.....+-
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~-~~~A~~i~~~e 228 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGD-FREAEDIAVQE 228 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCC-hHHHHhhcccc
Confidence 999999999999999999999999999 99998877653
No 85
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=7.6e-11 Score=111.57 Aligned_cols=214 Identities=18% Similarity=0.117 Sum_probs=131.7
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCH
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~d~ 283 (436)
|..-+..|+|.+|++...+.-+..+.-..++..-+.+..++|+++.|-.++.++-+..++ ...+...++.++...+ |+
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~-d~ 169 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR-DY 169 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC-Cc
Confidence 334444455555555555544444433444444444555555555555555555554332 2334444444444443 35
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH-----------------------------------------
Q 013821 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK----------------------------------------- 322 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~----------------------------------------- 322 (436)
..|.....++++..|.++.++.....+|...|++.....
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 555555555555555555555555555555555544444
Q ss_pred -----------------------------------HHHHHHHH---------hHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 323 -----------------------------------AQEEHIQV---------LPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 323 -----------------------------------~~~~~~~~---------~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++.+.++. .-....++...=++..++.++..|+++.
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 44444433 1122334444555555555555788999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
.+..||..+++.+. |.+|..+|+.++...|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 330 L~~tLG~L~~k~~~-w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKL-WGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999887 677899999999999999999999998865
No 86
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.46 E-value=7.5e-11 Score=129.39 Aligned_cols=218 Identities=14% Similarity=0.028 Sum_probs=142.1
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 271 (436)
...|..+-..+.+.|++++|+.+|+++.+.. | +...|..+...|.+.|++++|.+.|.++... .| +...|..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence 4566666666777777777777777766532 3 4566677777777777777777777776552 22 3456666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcC
Q 013821 272 YAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKG 337 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g 337 (436)
+...|.+.++ +++|.+.|+++.+.+ +.+...|..+...+.+.|+.++|..++.++... ..+.+.|
T Consensus 585 LI~ay~k~G~-ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQ-VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 6666666653 777777777777665 345666777777777777777777777665544 4566667
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821 338 DLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA--SPADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~ 414 (436)
++++|.++++++.+.. +-+..++..+..+|.+.|+ +++|+.+|++.... .| +...|..+...|.+.|++++|+++
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~-~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777766653 2345666667777777776 77777777766543 33 355666677777777777777777
Q ss_pred HHHHHh
Q 013821 415 SDQFQQ 420 (436)
Q Consensus 415 ~~~al~ 420 (436)
|++...
T Consensus 742 f~eM~~ 747 (1060)
T PLN03218 742 LSEMKR 747 (1060)
T ss_pred HHHHHH
Confidence 766554
No 87
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.45 E-value=1.1e-10 Score=128.19 Aligned_cols=222 Identities=9% Similarity=-0.000 Sum_probs=165.2
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAK 274 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 274 (436)
+...|..+-..+.+.|+.++|.++|+++.+... .+...|..+...|.+.|++++|++.|++.....- -+..+|..+..
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345666666777788888888888888777542 2667778888888888888888888887766532 25667777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCC
Q 013821 275 LVWELHRDQHRALTYFERAALAA---PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGD 338 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~ 338 (436)
.|.+.+. +++|.+.|++..... ..+...+..+...+.+.|++++|.++++.+.+. ..|.+.|+
T Consensus 551 a~~k~G~-~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 551 ACGQSGA-VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHHCCC-HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 7777764 888888888876531 124566777777888888888888888766655 56778888
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821 339 LEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 339 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~ 415 (436)
+++|+..|.+..+. .|+ ...|..+..++.+.|+ +++|.++++++.+.. +.+...+..+...|.+.|++++|.++|
T Consensus 630 ~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888887765 344 6677888888888888 888888888887754 334678888888888888888888888
Q ss_pred HHHHhh
Q 013821 416 DQFQQV 421 (436)
Q Consensus 416 ~~al~l 421 (436)
++....
T Consensus 708 ~eM~~~ 713 (1060)
T PLN03218 708 EDIKSI 713 (1060)
T ss_pred HHHHHc
Confidence 887653
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=2.6e-11 Score=120.67 Aligned_cols=230 Identities=12% Similarity=0.050 Sum_probs=179.7
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.|.+.-..|..+...|+-++|..+...++..++....+|..+|.++....+|++|+.+|+.|+.++|+|..+|..++.+.
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 34455556666666789999999999999988888889999999999999999999999999999999999999998877
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------------hHHHHc
Q 013821 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------------LPIQSK 336 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~~ 336 (436)
.+++ |++-....-.+.+++.|..-..|..++..+...|++..|..+++++.+. .+..+.
T Consensus 120 ~QmR-d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~ 198 (700)
T KOG1156|consen 120 IQMR-DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA 198 (700)
T ss_pred HHHH-hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 7775 5888888888889999998889999998888889888888888866655 566677
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-HHH
Q 013821 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS-KSS 415 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~ 415 (436)
|.+++|.+.+..--..--+........|.++.++++ +++|...|...+..+|++...+..+-.++.+..+--+++ ..|
T Consensus 199 g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~-lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly 277 (700)
T KOG1156|consen 199 GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ-LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALY 277 (700)
T ss_pred ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh-HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 777777766654433333344556667888889999 999999999999999999888888887876444444555 666
Q ss_pred HHHHhhCCCChhH
Q 013821 416 DQFQQVAPIRQGA 428 (436)
Q Consensus 416 ~~al~l~p~~~~~ 428 (436)
...-+.+|.+..+
T Consensus 278 ~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 278 AILSEKYPRHECP 290 (700)
T ss_pred HHHhhcCcccccc
Confidence 6666666654443
No 89
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.43 E-value=1.7e-11 Score=131.44 Aligned_cols=236 Identities=14% Similarity=-0.017 Sum_probs=146.6
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
+.++|...+..-. . .+..+|..+...+.+.|++++|+.+|+++.+.. .-+...+..+..++.+.|++++|.+.+.
T Consensus 274 ~~~~A~~vf~~m~---~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMP---E-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCC---C-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4445666665432 2 355688888888899999999999998887643 2255677788888888888888888888
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013821 257 HATMAD-PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 257 ~al~~~-p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 330 (436)
.+++.. +.+..++..+...|.+.|+ +++|.+.|++..+ .+...|..+...|...|+.++|.++++++...
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGR-MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCC-HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 887765 4466677777777777664 7777777776543 35566777777777777777777777766554
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 331 --------LPIQSKGDLEGAEEYFSRAILANP--GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~ 400 (436)
..+...|++++|.++|+...+..+ -+...|..+..++.+.|+ +++|.+.+++. ...| +..+|..+..
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~-~~eA~~~~~~~-~~~p-~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL-LDEAYAMIRRA-PFKP-TVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC-HHHHHHHHHHC-CCCC-CHHHHHHHHH
Confidence 345556666666666666654321 113344445555555555 55555544432 1122 2334444444
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCC
Q 013821 401 FLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 401 ~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
.+...|+.+.|...+++.+.+.|.
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCC
Confidence 444444444444444444444443
No 90
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=119.20 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=107.3
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.....-|+-+++.++|++|+..|.+||+++|.++..|.+.|.+|.++|.++.|++.++.++.++|....+|..||.+|+.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 013821 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEME 315 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 315 (436)
+++ +.+|++.|+++|+++|++...+.+|..+...++
T Consensus 162 ~gk-~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 162 LGK-YEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred cCc-HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 986 999999999999999999999988885444433
No 91
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.43 E-value=1.9e-11 Score=131.11 Aligned_cols=213 Identities=10% Similarity=-0.026 Sum_probs=143.3
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKLVW 277 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 277 (436)
..+..+-..|.+.|++++|.++|+++. +.+...|..+...|.+.|++++|++.|++..+..- -+...+..+...+.
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666677777777777777777653 34566777777777777777777777777765432 24556666666767
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------hHHHHcCCHHHHHHHHH
Q 013821 278 ELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------LPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~g~~~~A~~~~~ 347 (436)
..+. +++|.+.+..+++.. +.+..++..+...|.+.|+.++|.++++++.+. ..|.+.|+.++|++.|+
T Consensus 337 ~~g~-~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 337 RLAL-LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred hccc-hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 6664 777777777777765 446666777777777777777777777654333 56667777777777777
Q ss_pred HHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821 348 RAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA--DSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 348 ~al~~--~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~ 417 (436)
+..+. .|+ ..++..+..++.+.|. .++|..+|+...+..+- +...|..+..+|.+.|+.++|.+.+++
T Consensus 416 ~M~~~g~~Pd-~~T~~~ll~a~~~~g~-~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 416 RMIAEGVAPN-HVTFLAVLSACRYSGL-SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHhCCCCC-HHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 76654 233 5566666667777777 77777777777653221 235566777777777777777776654
No 92
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.1e-12 Score=117.12 Aligned_cols=129 Identities=23% Similarity=0.208 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
+-+..-|.-+.+.++|++|+..|.+||+++|.++..|.+.|.+|.+++. ++.|++.++.++.++|....+|..||
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~-~~~AVkDce~Al~iDp~yskay~RLG---- 156 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE-YEDAVKDCESALSIDPHYSKAYGRLG---- 156 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc-hHHHHHHHHHHHhcChHHHHHHHHHH----
Confidence 5567888999999999999999999999999999999999999999986 99999999999999999999999999
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH---HHHHHHHHHH
Q 013821 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHD---KALCYFERAV 385 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~---eA~~~~~~al 385 (436)
.+|..+|++++|++.|++||+++|++...+.+|.++-.++++ .. .+...++-+.
T Consensus 157 ------------------~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e-~~~~~~~~~~~d~~~ 213 (304)
T KOG0553|consen 157 ------------------LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE-PKSSAQASGSFDMAG 213 (304)
T ss_pred ------------------HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC-CCcccccccchhhhh
Confidence 999999999999999999999999999999999999888877 44 4444444443
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=2.2e-12 Score=129.70 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=163.8
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|-....+|...|+..+|..+..+-++ .|.++..|..+|.+....--|++|.++.+.. ++.+.+.+|...+.
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~ 497 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhcccccc
Confidence 4556666677777777777777777777 5557777777777666655555555555443 33355556655555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.+ +|.++.++++..++++|-....|+.+| .+..+.++++.|.++|.+++.++|++.+
T Consensus 498 ~~-~fs~~~~hle~sl~~nplq~~~wf~~G----------------------~~ALqlek~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 498 NK-DFSEADKHLERSLEINPLQLGTWFGLG----------------------CAALQLEKEQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred ch-hHHHHHHHHHHHhhcCccchhHHHhcc----------------------HHHHHHhhhHHHHHHHHHHhhcCCCchh
Confidence 44 699999999999999999999999999 8888899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
+|++++.+|..+++ -.+|...+++|++.+-++..+|-|+..+..+.|.+++|++.|.+.+.+..+..+
T Consensus 555 aWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred hhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999 999999999999999888999999999999999999999999999998755544
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.41 E-value=1.9e-11 Score=120.21 Aligned_cols=176 Identities=19% Similarity=0.061 Sum_probs=147.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~ 304 (436)
+|+++.++..+|.++...|+++.|...+.++.+..|.+ .+.....+.+++..+ ++++|...++++++.+|++..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG-DLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHH
Confidence 79999999999999999999999999999999887754 556777787877776 59999999999999999999777
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
.. +..+...+ ...+....+.+.+......+|....++..+|.++..+|+ +++|+..++++
T Consensus 81 ~~-~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~~~a 140 (355)
T cd05804 81 KL-HLGAFGLG------------------DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ-YDRAEEAARRA 140 (355)
T ss_pred HH-hHHHHHhc------------------ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 65 42222222 123444455555554445677778888899999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 385 VQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 385 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
+++.|++..++..++.++...|++++|+.++.+++...|.
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 9999999999999999999999999999999999998764
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=2e-11 Score=126.10 Aligned_cols=220 Identities=15% Similarity=0.004 Sum_probs=183.5
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHH-----HHcCCHHHHHHHH
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH--------------------PLLLRNYAQLL-----QKKGDLYRAEDYY 255 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--------------------~~~~~~la~~~-----~~~g~~~~A~~~~ 255 (436)
.++.|.+......|.+|...+.....+.-++ ....+..+..+ ...++...|...|
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~al 481 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHAL 481 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4566666667777777776666665554111 11111111111 2244578899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----
Q 013821 256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----- 330 (436)
Q Consensus 256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 330 (436)
-+++.+++..+.+|..||.+|.... |...|.++|++|.++|+.+..++...+..+....+++.|..++...-+.
T Consensus 482 i~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 482 IRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 9999999999999999999999987 6999999999999999999999999999999999999998886543333
Q ss_pred ---------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 331 ---------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ---------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
..|...+++.+|+..|+.|++.+|.+...|..+|.+|...|+ +.-|++.|.+|..++|.+..+.+-.+..
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr-y~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR-YSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc-eehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHHhhC
Q 013821 402 LWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 402 ~~~~g~~~eA~~~~~~al~l~ 422 (436)
...+|+|.+|+..+...+...
T Consensus 640 ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999998877653
No 96
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.40 E-value=4.4e-11 Score=116.02 Aligned_cols=156 Identities=19% Similarity=0.099 Sum_probs=142.8
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
....++++.+..++..|++++|+..++..+...|+|+..+...+.++...++..+|++.+++++.++|..+..++++|.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
|...++ +.+|+..+++.+..+|+++..|..|+..+..+|+..++..... ..|...|++++|+..+.++.+...-
T Consensus 384 ll~~g~-~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----E~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 384 LLKGGK-PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----EGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHhcCC-hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----HHHHhCCCHHHHHHHHHHHHHhccC
Confidence 999986 9999999999999999999999999999999999888877766 5566789999999999988887644
Q ss_pred CH
Q 013821 356 DG 357 (436)
Q Consensus 356 ~~ 357 (436)
+.
T Consensus 458 ~~ 459 (484)
T COG4783 458 GF 459 (484)
T ss_pred Cc
Confidence 33
No 97
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.1e-10 Score=104.24 Aligned_cols=189 Identities=16% Similarity=0.083 Sum_probs=163.8
Q ss_pred CCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 013821 212 DDSAEAEEYYKRMIDEY------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHR 285 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~ 285 (436)
.+.++-++++...+... |+.-.++-....+....|+.+-|..++++.....|+...+....|..+...+. +++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~-~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN-YKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc-hhh
Confidence 34466666666655533 33345566667777889999999999999999999999999999988888875 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAK 365 (436)
Q Consensus 286 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (436)
|+++|+..++-+|.|...+.... .+...+|+--+|++.+..-++..+.|.++|..++.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKl----------------------Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKL----------------------AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHH----------------------HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999999999998887666 66777888889999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCC
Q 013821 366 LVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE---EDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 366 ~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~l~p~ 424 (436)
+|...|+ |++|.-++++.+-+.|-++..+..+|.+++-+| +..-|.++|.+++++.|.
T Consensus 163 iY~~~~~-f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 163 IYLSEGD-FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHhHhH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 9999999 999999999999999999999999999988887 456699999999999984
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=5.6e-11 Score=118.28 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=180.8
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
..-.+..++|...++..+..++..|++++.+...|..+..+|+-++|..+...++..++.....|..+|.++.... +|+
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-~Y~ 92 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-KYD 92 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh-hHH
Confidence 3445566999999999999999999999999999999999999999999999999999999999999998877765 599
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHh
Q 013821 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+|+++|+.|+.+.|+|..+|.-++.+...+++++.....-.+.++. ..+...|++..|...++.-...
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888777666655554 6667788999998888777665
Q ss_pred C---CCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 353 N---PGD-----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 353 ~---p~~-----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
. |.. .+.......++...|. +++|++.+..--..--+........+.++.++++.++|+..|+..+..+|+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd 251 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD 251 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch
Confidence 4 331 2345555666677777 777777766533222233345567789999999999999999999999998
Q ss_pred Chh
Q 013821 425 RQG 427 (436)
Q Consensus 425 ~~~ 427 (436)
...
T Consensus 252 n~~ 254 (700)
T KOG1156|consen 252 NLD 254 (700)
T ss_pred hHH
Confidence 544
No 99
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=4.6e-10 Score=114.09 Aligned_cols=216 Identities=19% Similarity=0.183 Sum_probs=138.7
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH---- 280 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---- 280 (436)
..++...|++++|++++++....-.+...++-..|.++.++|++++|...|...+..+|++...+..+..++....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3455666777777777777777777777777777777777777777777777777777777777777776653222
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH--------------------------------HHHHHHHHHHccCchHHHHHHHHHH
Q 013821 281 RDQHRALTYFERAALAAPQDSNI--------------------------------LAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~--------------------------------~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
.+.+.-...|++.....|..... ..++-.+|....+..-...++..+.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 12455566666665555532111 1111111111111111111111111
Q ss_pred HH-----------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 013821 329 QV-----------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC 379 (436)
Q Consensus 329 ~~-----------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~ 379 (436)
.. ..|...|++++|++++++||+..|..++.+...|.++.+.|+ +.+|..
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~-~~~Aa~ 249 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD-LKEAAE 249 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-HHHHHH
Confidence 00 455677888888888888888888888888888888888888 888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 380 YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 380 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
.++.|-.+++.|-.+-...+..+.+.|+.++|.+.......-
T Consensus 250 ~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 250 AMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 888888888877777777777788888888887776655443
No 100
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.36 E-value=1.7e-11 Score=103.40 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=104.2
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821 292 RAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 292 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
-+..+. ++..+..+.+| ..+...|++++|+..|+-+..++|.+...|++||.++..+
T Consensus 25 ~l~~~~~~~~l~~lY~~A----------------------~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~ 82 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYA----------------------MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ 82 (157)
T ss_pred HHHCCChHHHHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344556 66777888888 8888999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCChhHHh
Q 013821 371 HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA---PIRQGAVT 430 (436)
Q Consensus 371 g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~---p~~~~~~~ 430 (436)
|+ |.+|+..|.+++.++|+++..++++|.+++..|+.+.|.+.|+.++... |.+.....
T Consensus 83 g~-~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~ 144 (157)
T PRK15363 83 KH-WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQ 144 (157)
T ss_pred hh-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999885 44444333
No 101
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.32 E-value=6.6e-11 Score=99.81 Aligned_cols=102 Identities=12% Similarity=-0.008 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
++.-+..+.+|..++..|+ +++|+..|+-+..++|.+...|++|| .++..+|+|++|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~-l~~A~~~f~~L~~~Dp~~~~y~~gLG----------------------~~~Q~~g~~~~A 88 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKE-FAGAARLFQLLTIYDAWSFDYWFRLG----------------------ECCQAQKHWGEA 88 (157)
T ss_pred HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHH----------------------HHHHHHhhHHHH
Confidence 4444555555555555543 66666666666666666666666666 555556666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~ 388 (436)
+..|.+|+.++|+++..++++|.|+...|+ .+.|++.|+.++...
T Consensus 89 I~aY~~A~~L~~ddp~~~~~ag~c~L~lG~-~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 89 IYAYGRAAQIKIDAPQAPWAAAECYLACDN-VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666 666666666666554
No 102
>PLN03077 Protein ECB2; Provisional
Probab=99.31 E-value=4e-10 Score=123.70 Aligned_cols=246 Identities=10% Similarity=0.037 Sum_probs=141.2
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+.+.+...+.......-..+...+..+-..|.+.|++++|.++|+++.+ .+...|..+...|.+.|++++|+..|++
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4445555555554443333345666666677777777777777776543 2445666666667777777777777776
Q ss_pred HHHhCCCCHHHH-----------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 258 ATMADPGDGESW-----------------------------------MQYAKLVWELHRDQHRALTYFERAALAAPQDSN 302 (436)
Q Consensus 258 al~~~p~~~~~~-----------------------------------~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~ 302 (436)
.+...+.+...+ ..+...|.+.|+ +++|...|+.. +.+..
T Consensus 481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~-~~~A~~~f~~~----~~d~~ 555 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR-MNYAWNQFNSH----EKDVV 555 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC-HHHHHHHHHhc----CCChh
Confidence 654322222111 122244444443 66666666554 44566
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Q 013821 303 ILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGDLEGAEEYFSRAILA---NPGDGEIMSQYAKL 366 (436)
Q Consensus 303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~ 366 (436)
.|..+...+...|+.++|+++++++... ..+.+.|++++|.++|+...+. .|+ ...|..+..+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~ 634 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDL 634 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHH
Confidence 6666666677777777777776665554 4455666666666666666533 222 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013821 367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 367 ~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~y 435 (436)
+.+.|+ +++|.+.+++. ...|+ ..+|..+...+...|+.+.+....++++++.|+...... .+|+|
T Consensus 635 l~r~G~-~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 635 LGRAGK-LTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHhCCC-HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 666666 66666666653 23343 445555555555566666666666666666665554444 44444
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.31 E-value=5.4e-11 Score=116.71 Aligned_cols=114 Identities=24% Similarity=0.143 Sum_probs=106.8
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
+...|..++..|++++|+.+|+++++.+|+++.+|+.+|.+|...|++++|+..+++++.++|.++.+++.+|.+++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45667888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 013821 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEME 315 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 315 (436)
+ +++|+..|+++++++|++..+...++.+...+.
T Consensus 85 ~-~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 E-YQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred C-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 5 999999999999999999999998888866653
No 104
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.31 E-value=1.1e-11 Score=117.14 Aligned_cols=241 Identities=9% Similarity=0.026 Sum_probs=183.5
Q ss_pred ChHHHHHhhcCCCCCCc---hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHH
Q 013821 181 SPPMYLAMGLGISVPGF---DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGDLYRA 251 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A 251 (436)
.-..+|..++...-.+. ...|..+|+.|..+++|++|+++-..-+.+ .-..+..--++|+++..+|.|++|
T Consensus 35 aGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA 114 (639)
T KOG1130|consen 35 AGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEA 114 (639)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchH
Confidence 34566777777766322 267888999999999999999875443322 223445667899999999999999
Q ss_pred HHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCC------C
Q 013821 252 EDYYNHATMADPG------DGESWMQYAKLVWELHRD-------------------QHRALTYFERAALAAPQ------D 300 (436)
Q Consensus 252 ~~~~~~al~~~p~------~~~~~~~la~~~~~~~~d-------------------~~~A~~~~~~al~~~p~------~ 300 (436)
+.+..+-+.+..+ ...+++++|.+|...|+- ++.|.++|+.-+++... .
T Consensus 115 ~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aq 194 (639)
T KOG1130|consen 115 LTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQ 194 (639)
T ss_pred HHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 9998887765322 467899999999877641 24566666666555432 2
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhC------CCC
Q 013821 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILAN------PGD 356 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~------p~~ 356 (436)
..++-+||..|+-+|+++.|+..-+.-+.. .++.-.|+++.|+++|++++.+. ...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 334568899999999999998877754443 77888899999999999987653 223
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASP------ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
+...+.||..|.-..+ +++|+.++.+-+.+.. ....+++.||..+-.+|..++|+.+.++.+++.
T Consensus 275 AQscYSLgNtytll~e-~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKE-VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6678999999999988 9999999999776643 235788999999999999999999999888765
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=6.4e-10 Score=113.00 Aligned_cols=242 Identities=15% Similarity=0.046 Sum_probs=164.8
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-----DLYRAE 252 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-----~~~~A~ 252 (436)
+++.|..++......-. +.....-..|.++.++|++++|...|+..|+.+|++...+..+..+..... +.+.-.
T Consensus 19 ~~~~AL~~L~~~~~~I~-Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 19 DYEEALEHLEKNEKQIL-DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred CHHHHHHHHHhhhhhCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 44567777766555444 556677788999999999999999999999999999999999999884333 456667
Q ss_pred HHHHHHHHhCCCC--------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC
Q 013821 253 DYYNHATMADPGD--------------------------------GESWMQYAKLVWELHRDQHRALTYFERAAL---AA 297 (436)
Q Consensus 253 ~~~~~al~~~p~~--------------------------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~---~~ 297 (436)
..|+......|.. |.++..+-.+|....+ ..-....+...+. ..
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K-~~~i~~l~~~~~~~l~~~ 176 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK-AAIIESLVEEYVNSLESN 176 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH-HHHHHHHHHHHHHhhccc
Confidence 7777776666543 1111111111110000 0001111111110 00
Q ss_pred ------------CCCHH--HHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHH
Q 013821 298 ------------PQDSN--ILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 298 ------------p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~ 351 (436)
|.... +++.++..+...|++++|+..+++++.. .++...|++.+|.++++.|-.
T Consensus 177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred CCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01111 2244566666666666666666655554 899999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PAD-------SHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~--p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
+++.|-.+....+..+.+.|+ +++|...+......+ |.. .+.....|.+|.+.|++..|++.|..+....
T Consensus 257 LD~~DRyiNsK~aKy~LRa~~-~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 257 LDLADRYINSKCAKYLLRAGR-IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred CChhhHHHHHHHHHHHHHCCC-HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999998888889999999999 999999988765544 211 1444667889999999999999998888764
No 106
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=4.8e-10 Score=113.76 Aligned_cols=207 Identities=15% Similarity=0.061 Sum_probs=144.6
Q ss_pred HHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
...+..+..+++ .++.+.+.++.-+...++.+.|..+.+++++.+ -+++.+|..+|.++-..+++.+|+...+-++.-
T Consensus 464 lqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 344555556666 555666666666666666666666666666663 344566666666666666666666665555554
Q ss_pred CCCC----------------------------------------------------------------------------
Q 013821 262 DPGD---------------------------------------------------------------------------- 265 (436)
Q Consensus 262 ~p~~---------------------------------------------------------------------------- 265 (436)
.|+|
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 4441
Q ss_pred ---------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCch
Q 013821 266 ---------------------------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDG 318 (436)
Q Consensus 266 ---------------------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 318 (436)
...|...+..+...+ ..++|..++.++-.++|..+..|+..|.++...|+..
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~-~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG-NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH
Confidence 123334444433333 3566777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHH------------hHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 319 EDDKAQEEHIQV------------LPIQSKGDLEGAEE--YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 319 ~A~~~~~~~~~~------------~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
+|.+.+..++.. .++.+.|+..-|.. .+..+++++|.++++|+++|.++.++|+ .++|.++|..+
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd-~~~Aaecf~aa 780 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD-SKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc-hHHHHHHHHHH
Confidence 777777655544 77888888887877 9999999999999999999999999999 99999999999
Q ss_pred HHhCCCCH
Q 013821 385 VQASPADS 392 (436)
Q Consensus 385 l~~~p~~~ 392 (436)
+++.+.+|
T Consensus 781 ~qLe~S~P 788 (799)
T KOG4162|consen 781 LQLEESNP 788 (799)
T ss_pred HhhccCCC
Confidence 99998766
No 107
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.29 E-value=9.7e-11 Score=114.95 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+...|..++..|+|++|+.+|+++++++|.++.+++.+|.++..+++ +++|+..++++++++|++..+++.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~-~~eAl~~~~~Al~l~P~~~~a~~~lg------ 77 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN-FTEAVADANKAIELDPSLAKAYLRKG------ 77 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCCHHHHHHHH------
Confidence 45567777777888888888888888888877777777777777764 77777777777777777777777777
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++..+|+|++|+..|+++++++|++..+...++.+...+
T Consensus 78 ----------------~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 78 ----------------TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ----------------HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777665554
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.27 E-value=3.2e-10 Score=120.31 Aligned_cols=177 Identities=12% Similarity=0.009 Sum_probs=146.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 013821 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS----- 301 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~----- 301 (436)
..|.+..+|..++..+...+++++|+..++.+++..|+...+++.+|.+++..+. +.++.-. .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhhhh--hhhhhcccccchhHH
Confidence 4688999999999999999999999999999999999999999999998877764 6666555 5555555443
Q ss_pred --------------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 302 --------------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 302 --------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
.+++.+| .+|.++|++++|...|+++++.+|+++.+++++|..|
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA----------------------~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLA----------------------EAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHH----------------------HHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 5666666 8899999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHh--------------------CCCCHHH--------HHHHH------------HHHHHCCC
Q 013821 368 WELHHDHDKALCYFERAVQA--------------------SPADSHV--------LAAYA------------CFLWETEE 407 (436)
Q Consensus 368 ~~~g~d~~eA~~~~~~al~~--------------------~p~~~~~--------~~~la------------~~~~~~g~ 407 (436)
... + +++|+.++.+|+.. +|++... ...++ ..|...++
T Consensus 161 ae~-d-L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 161 EEE-D-KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred HHh-h-HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh
Confidence 998 6 99999999998764 3444322 12223 56778889
Q ss_pred hHHHHHHHHHHHhhCCCChhHHh
Q 013821 408 DEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 408 ~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
+++++.+++.+++.+|....+..
T Consensus 239 ~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 239 WDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred hhHHHHHHHHHHhcCCcchhhHH
Confidence 99999999999999987655543
No 109
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=6.4e-10 Score=109.82 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=161.6
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.+...|+|++|+....+.+...|++..++...-.++.+.++|++|+...++-....-.+ ...+..|.|.+++++ .++|
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk-~Dea 98 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNK-LDEA 98 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHccc-HHHH
Confidence 34455999999999999999999999999999999999999999995554433222222 223789999999987 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----hHHHHcCCHHHHHHH---HHHHHHhCCC-CH
Q 013821 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-----LPIQSKGDLEGAEEY---FSRAILANPG-DG 357 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~g~~~~A~~~---~~~al~~~p~-~~ 357 (436)
+.+++ -.++.+..++...+.++++++++++|..+|+...+. ....+.+-...+-.. ..+.+...|. ..
T Consensus 99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 99999 567777888899999999999999999999876655 111111111111111 2233333444 56
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQAS-------PAD--------SHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-------p~~--------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
+.++|.+.++...|+ |.+|++.+++++.+. ..+ ..+...++.++..+|+.++|...|...+...
T Consensus 176 el~yN~Ac~~i~~gk-y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 176 ELLYNTACILIENGK-YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 789999999999999 999999999995431 111 1466789999999999999999999999987
Q ss_pred CCCh
Q 013821 423 PIRQ 426 (436)
Q Consensus 423 p~~~ 426 (436)
|.-.
T Consensus 255 ~~D~ 258 (652)
T KOG2376|consen 255 PADE 258 (652)
T ss_pred CCCc
Confidence 6543
No 110
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=2.5e-09 Score=103.10 Aligned_cols=254 Identities=18% Similarity=0.151 Sum_probs=198.8
Q ss_pred hcCCCChHHHHHhhcCCCCCCch-hhhhhHHhhhhhCCC---HHHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 013821 176 IERPVSPPMYLAMGLGISVPGFD-DAGEVVDLIMPNFDD---SAEAE-----EYYKRMIDEYPCHPLLLRNYAQLLQKKG 246 (436)
Q Consensus 176 ~~~p~~a~~~~~~~~~~~~~~~~-~~~~~lg~~~~~~g~---~~~A~-----~~~~~al~~~P~~~~~~~~la~~~~~~g 246 (436)
+.+.+.+...|..|+..-+.+.+ ..+.+.-..--+.|+ .++++ -.|++.+..+|.+-++|+.+-.+-...|
T Consensus 257 qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence 33455666777777777774322 112222222222333 33443 3478889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHH
Q 013821 247 DLYRAEDYYNHATMADPGD---------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ----DSNILAAYACFLWE 313 (436)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~ 313 (436)
+.+.-.+.|++|+..-|.. ...|.+++..-...-.|.+.+.+.|+.++++-|. .+.+|..++.+..+
T Consensus 337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR 416 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR 416 (677)
T ss_pred CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 9999999999999987764 2345555533222334789999999999999997 57789999999999
Q ss_pred ccCchHHHHHHHHHHHH-----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013821 314 MEDDGEDDKAQEEHIQV-----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~ 382 (436)
+.+...|.+++..++-. .+-.++++++....+|++-|+..|.+..+|...|.+-..+|+ .+.|...|+
T Consensus 417 q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd-tdRaRaife 495 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD-TDRARAIFE 495 (677)
T ss_pred HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh-HHHHHHHHH
Confidence 99999999999876655 667788999999999999999999999999999999999999 999999999
Q ss_pred HHHHhCCCC-H-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 383 RAVQASPAD-S-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 383 ~al~~~p~~-~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
-|+....-+ + ..|..+..+-...|.++.|..+|++.|+..++...-..
T Consensus 496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis 545 (677)
T KOG1915|consen 496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS 545 (677)
T ss_pred HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence 998754322 2 45677888889999999999999999999887654433
No 111
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.24 E-value=3.9e-11 Score=113.56 Aligned_cols=216 Identities=12% Similarity=0.032 Sum_probs=167.5
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGESWMQYAK 274 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~ 274 (436)
|.-+++.|+....+..|+.+++..-++. .+|..+|++|+.+++|++|+++-..-+.+ .-..+...-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4567889999999999999999877664 67889999999999999999986654433 2234556678999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCc-------------hHHHHHHHHH-------H
Q 013821 275 LVWELHRDQHRALTYFERAALAAP------QDSNILAAYACFLWEMEDD-------------GEDDKAQEEH-------I 328 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~-------------~~A~~~~~~~-------~ 328 (436)
++-.+|. |++|+.++.+-+.+.. ....+++++|.+|...|+- +++...++.+ +
T Consensus 104 tlKv~G~-fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGA-FDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcc-cchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 9888876 9999999999887643 2567899999999888741 2222333222 1
Q ss_pred HH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 329 QV------------------LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 329 ~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
+. ..|+..|+|++|+..-+.-|++.... -.++.++|.++.-+|+ ++.|+++|+++
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~t 261 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLT 261 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHH
Confidence 11 77888899999999988888775432 3588999999999999 99999999997
Q ss_pred HHhC----CCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 385 VQAS----PAD--SHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 385 l~~~----p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
+.+. ... ....+.||..|.-..++++||.++.+-+++.
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 322 3567889999999999999999998877764
No 112
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.4e-10 Score=103.16 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR--DQHRALTY 289 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--d~~~A~~~ 289 (436)
...++.+.-++..+..+|++++-|..||.+|..+|++..|...|.+|+++.|++++++..+|.+++...+ +..++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 4467888899999999999999999999999999999999999999999999999999999999988764 45799999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
+++++..+|.+..++..|+ ..++..|+|.+|+..++..++..|.+..
T Consensus 216 l~~al~~D~~~iral~lLA----------------------~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLA----------------------FAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999 9999999999999999999999886543
No 113
>PLN03077 Protein ECB2; Provisional
Probab=99.20 E-value=3.8e-09 Score=116.05 Aligned_cols=231 Identities=10% Similarity=0.016 Sum_probs=186.9
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHh-CCCCHHH----------------------
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE-YPCHPLL---------------------- 234 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~~~~---------------------- 234 (436)
+.+.|...+..-. . .+...|..+...+.+.|++++|+.+|++++.. .|+....
T Consensus 439 ~~~~A~~vf~~m~---~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 439 CIDKALEVFHNIP---E-KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred CHHHHHHHHHhCC---C-CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 5556766666533 2 34568999999999999999999999999864 3432211
Q ss_pred ------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Q 013821 235 ------------LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--PQD 300 (436)
Q Consensus 235 ------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--p~~ 300 (436)
+..+...|.+.|++++|...|+.. +.+...|..+...|...|. .++|++.|++..+.. |+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd- 588 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPD- 588 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCC-
Confidence 123346788889999999988876 6688899999999888875 999999999998754 44
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
...+..+...+...|..++|.++++.+... .++.+.|++++|.+.+++. .+.|+ ..+|..|-.+
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~a 666 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNA 666 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHH
Confidence 445666667889999999999999988743 7888999999999999885 35665 7788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 367 ~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
+...|+ .+.|....++++++.|++...+..++.+|...|++++|.+..+...+.
T Consensus 667 c~~~~~-~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 667 CRIHRH-VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHcCC-hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 877777 999999999999999999999999999999999999999998877654
No 114
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.19 E-value=7.4e-09 Score=95.98 Aligned_cols=175 Identities=11% Similarity=0.030 Sum_probs=113.4
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLL---LRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWM 270 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 270 (436)
.+..+...|...+..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 34456667777788899999999999999999988744 5899999999999999999999999998876 56788
Q ss_pred HHHHHHHHHc--------------CC---HHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCchHHHHHHHHHHHH
Q 013821 271 QYAKLVWELH--------------RD---QHRALTYFERAALAAPQDSNIL---AAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 271 ~la~~~~~~~--------------~d---~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
.+|.++...+ +| ..+|+..|++.++..|+...+- ..+..+...+...+- .+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~--~ia------ 182 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL--SVA------ 182 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH--HHH------
Confidence 8887754432 11 2478899999999999864332 222211111100000 000
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~ 380 (436)
..|.+.|.|..|+.-++.+++..|+. .+++..++.++..+|. .++|...
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~-~~~a~~~ 234 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL-NAQADKV 234 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC-hHHHHHH
Confidence 44445555555555555555554432 3444555555555555 4444443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=5.2e-10 Score=112.91 Aligned_cols=181 Identities=13% Similarity=0.132 Sum_probs=151.7
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
..++..+...|-...|+..|++. ..|-....||...|+..+|.....+-++ .|.++..|..+|++....
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~-- 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP-- 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh--
Confidence 45777888888888888888875 5567788888888988999888888888 777888888888775433
Q ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 282 DQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
.+|++++++..+ +..+...+| ......++|+++.+.++..++++|-....|
T Consensus 471 ------s~yEkawElsn~~sarA~r~~~----------------------~~~~~~~~fs~~~~hle~sl~~nplq~~~w 522 (777)
T KOG1128|consen 471 ------SLYEKAWELSNYISARAQRSLA----------------------LLILSNKDFSEADKHLERSLEINPLQLGTW 522 (777)
T ss_pred ------HHHHHHHHHhhhhhHHHHHhhc----------------------cccccchhHHHHHHHHHHHhhcCccchhHH
Confidence 344555544332 333455555 556678999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 361 ~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
+.+|.+..++++ ++.|.++|.+.+.++|++..+|.+++.+|.+.++..+|...+.++++-+
T Consensus 523 f~~G~~ALqlek-~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 523 FGLGCAALQLEK-EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HhccHHHHHHhh-hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999 9999999999999999999999999999999999999999999999875
No 116
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.18 E-value=4.8e-09 Score=94.78 Aligned_cols=170 Identities=18% Similarity=0.148 Sum_probs=114.1
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWM 270 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 270 (436)
.+..+...|...+..|++.+|+..|++++...|... .+.+.+|.+++..|++++|+..+++.++..|.+ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 345678888899999999999999999999988754 889999999999999999999999999999886 56888
Q ss_pred HHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013821 271 QYAKLVWELHRD----------QHRALTYFERAALAAPQDSNIL---AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 271 ~la~~~~~~~~d----------~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
.+|.+++....+ ..+|+..|+..++..|+...+- ..+..+-..+...+- .+ ...|.+.|
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~--~i------a~~Y~~~~ 155 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL--YI------ARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH--HH------HHHHHCTT
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH--HH------HHHHHHcc
Confidence 999887765321 3589999999999999865432 212211111000000 00 05566666
Q ss_pred CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHH
Q 013821 338 DLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~d~~ 375 (436)
.|..|+..++.+++..|+.. +++..++.++.++|. .+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~-~~ 195 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL-KQ 195 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT--HH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC-hH
Confidence 66666666666666666543 455666666666666 44
No 117
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.17 E-value=1.2e-09 Score=95.63 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~d~~~A 286 (436)
..+..+...+...++.++.+ ..+++.+|.++...|++++|+..|++++.+.|+ .+.++.++|.++...++ +++|
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~eA 91 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTKA 91 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHHH
Confidence 33555666665555555444 467788888888889999999999999888665 34588888888888875 8999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH-------HHHHHHHHHHHhCCCC
Q 013821 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE-------GAEEYFSRAILANPGD 356 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~-------~A~~~~~~al~~~p~~ 356 (436)
+.+|++++.++|.....+.+++.++...| ..+...|+++ +|+.+|++++..+|.+
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~---------------~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRG---------------EQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhh---------------HHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999998888888888887776655 4444566655 4444455555555543
No 118
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=5e-09 Score=97.75 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=116.6
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++.-|..++.-...+++......-.-+|.+++.+|+|++|+..|+-+...+..+.+.+.++|.|++-.|.|.+|.....+
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 66678888888887777544455566788999999999999999999987777889999999999999999999877665
Q ss_pred HHH--------------hCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 258 ATM--------------ADPG------------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 258 al~--------------~~p~------------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+-+ ++.+ ..+-...+|.+.+.... |++|+..|++++.-+|+....-..++.++
T Consensus 117 a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 117 APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH-YQEAIDVYKRVLQDNPEYIALNVYMALCY 195 (557)
T ss_pred CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 421 1111 12233445656665554 99999999999999999888888899999
Q ss_pred HHccCchHHHHHHHHHHHH
Q 013821 312 WEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~ 330 (436)
.++.-++-+.+.+.-|++.
T Consensus 196 yKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 196 YKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HhcchhhhHHHHHHHHHHh
Confidence 9998888777777654444
No 119
>PRK11906 transcriptional regulator; Provisional
Probab=99.15 E-value=4.1e-09 Score=102.99 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=133.3
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCH
Q 013821 236 RNYAQLLQKKGD---LYRAEDYYNHAT---MADPGDGESWMQYAKLVWEL--------HRDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 236 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~--------~~d~~~A~~~~~~al~~~p~~~ 301 (436)
+..|......+. .+.|+.+|.+++ +++|+.+.++..++.|++.. ..+..+|.+..++|++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 666666655544 467899999999 99999999999999998765 1235688999999999999999
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821 302 NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~ 381 (436)
.++..+| .++...++++.|+..|++|+.++|+.+.+|+..|.+....|+ .++|...+
T Consensus 339 ~a~~~~g----------------------~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i 395 (458)
T PRK11906 339 KILAIMG----------------------LITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-IEEARICI 395 (458)
T ss_pred HHHHHHH----------------------HHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 9999999 766777889999999999999999999999999999999999 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH-HHHCCChHHHHHHHHHHH
Q 013821 382 ERAVQASPADSHVLAAYACF-LWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 382 ~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~~~~al 419 (436)
+++++++|....+-...-++ .+-....++|+..|-+-.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 99999999866554444444 444556788888776543
No 120
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=3.5e-09 Score=92.55 Aligned_cols=195 Identities=11% Similarity=0.025 Sum_probs=138.2
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.|..++.+|.-.+.. |-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|+..++
T Consensus 64 RA~l~fERGvlYDSl----------------GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 64 RAQLLFERGVLYDSL----------------GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHhcchhhhh----------------hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 455666666666665 8899999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++|....+..+.|..++.-|+ +.-|.+.+.+-.+.+|+++.--..+- +-...-+..
T Consensus 128 LDp~y~Ya~lNRgi~~YY~gR-~~LAq~d~~~fYQ~D~~DPfR~LWLY-----------------------l~E~k~dP~ 183 (297)
T COG4785 128 LDPTYNYAHLNRGIALYYGGR-YKLAQDDLLAFYQDDPNDPFRSLWLY-----------------------LNEQKLDPK 183 (297)
T ss_pred cCCcchHHHhccceeeeecCc-hHhhHHHHHHHHhcCCCChHHHHHHH-----------------------HHHhhCCHH
Confidence 999999999999999888876 99999999999999999986433222 112234455
Q ss_pred HHHHHHH-HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHH
Q 013821 341 GAEEYFS-RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-------HVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 341 ~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~ 412 (436)
+|...+. ++...+ +....|+..+..+.+.. -...++++.+...++. +.++.+|+.+...|+.++|.
T Consensus 184 ~A~tnL~qR~~~~d-~e~WG~~iV~~yLgkiS-----~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~ 257 (297)
T COG4785 184 QAKTNLKQRAEKSD-KEQWGWNIVEFYLGKIS-----EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEAT 257 (297)
T ss_pred HHHHHHHHHHHhcc-HhhhhHHHHHHHHhhcc-----HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 5554433 333322 22334443333322221 1233444443333322 56777788888888888888
Q ss_pred HHHHHHHhh
Q 013821 413 KSSDQFQQV 421 (436)
Q Consensus 413 ~~~~~al~l 421 (436)
..|+-+++-
T Consensus 258 ~LfKLaian 266 (297)
T COG4785 258 ALFKLAVAN 266 (297)
T ss_pred HHHHHHHHH
Confidence 777766653
No 121
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=1.6e-09 Score=88.54 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=96.6
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 272 (436)
..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+.+|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467889999999999999999999999999876 5789999999999999999999999999998885 6789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
|.++...++ +++|+.+++++++..|++..+..
T Consensus 83 ~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGD-KEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCC-hHHHHHHHHHHHHHCcCChhHHH
Confidence 999998875 99999999999999999876554
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=1.5e-08 Score=112.05 Aligned_cols=245 Identities=15% Similarity=0.063 Sum_probs=175.6
Q ss_pred CCCChHHHHHhhcCCCCCCc----hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 013821 178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~ 247 (436)
+++.+..++..++...+... ..++..+|.++...|++++|..++++++...... ..++..+|.++...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 55566666766665433222 1355677888888999999999999888753321 2456778888899999
Q ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 013821 248 LYRAEDYYNHATMADPG--------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-----DSNILAAYACFLWEM 314 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~ 314 (436)
+++|..++++++..... ....+..+|.+++..| ++++|...+++++..... ....+..++.++...
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 99999999988875221 2334556788888876 499999999988876332 244556678888888
Q ss_pred cCchHHHHHHHHHHHH-------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhc
Q 013821 315 EDDGEDDKAQEEHIQV-------------------LPIQSKGDLEGAEEYFSRAILANPGDG----EIMSQYAKLVWELH 371 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g 371 (436)
|+++.|...+.+.... ..+...|+.+.|..++.......+... ..+..++.++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 9888888877765432 222345777888777766554322222 12567899999999
Q ss_pred CCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 372 HDHDKALCYFERAVQASP------ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 372 ~d~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
+ +++|+..+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 706 ~-~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 706 Q-FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred C-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 9 9999999999988632 22357888999999999999999999999998643
No 123
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1.3e-08 Score=95.06 Aligned_cols=202 Identities=14% Similarity=0.068 Sum_probs=159.5
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013821 210 NFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
...+|..|+.+++-.+..+.+.. ..-..+|.|++..|+|++|++.|.-+...+..+.+.+.++|.+++.+|. |.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-YIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-HHHHHH
Confidence 34788999999988886655443 6677889999999999999999999999888889999999999999986 999977
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH---HHHH-----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 289 YFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE---HIQV-----LPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 289 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---~~~~-----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
...+ .|+.+.-...+-.+-.+.++.++-+..-.. ..+. .+.+..-.|++|++.|++++.-+|+....-
T Consensus 113 ~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 113 IAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 6555 466665555555566666666554443321 1111 556666789999999999999999998899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 361 ~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 417 (436)
.++|.||+++.- |+-+.+.+.-.++..|+...+....+..++++=+-..|....+.
T Consensus 189 Vy~ALCyyKlDY-ydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ 244 (557)
T KOG3785|consen 189 VYMALCYYKLDY-YDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKE 244 (557)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHH
Confidence 999999999988 99999999999999999999988888888876555555544443
No 124
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.13 E-value=2.4e-09 Score=87.45 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAA 306 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~ 306 (436)
..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...++ +++|+.+|++++...|++ ..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 455666666666666666666666666666554 3455566666555553 666666666666655553 344555
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
+| .++...|++++|+.+++++++..|++..
T Consensus 82 ~~----------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LG----------------------MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HH----------------------HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55 5555555666666666666666555544
No 125
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.12 E-value=4.5e-09 Score=107.50 Aligned_cols=144 Identities=16% Similarity=0.057 Sum_probs=110.0
Q ss_pred HhCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-------CHHHHHHHHHHH
Q 013821 226 DEYPCHPLLL--RNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR-------DQHRALTYFERA 293 (436)
Q Consensus 226 ~~~P~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------d~~~A~~~~~~a 293 (436)
...|.+..+| +..|.-+...++ ..+|+.+|++|++++|+++.++..++.++..... +...+....+++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445665544 455555555444 7789999999999999998888888877655421 134566666666
Q ss_pred HHh--CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013821 294 ALA--APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 294 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (436)
+.+ +|.++.++..+| ..+...|++++|...+++|+.++| +..+|..+|.++...|
T Consensus 411 ~al~~~~~~~~~~~ala----------------------~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G 467 (517)
T PRK10153 411 VALPELNVLPRIYEILA----------------------VQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG 467 (517)
T ss_pred hhcccCcCChHHHHHHH----------------------HHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence 664 677777788887 667778999999999999999998 4789999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH
Q 013821 372 HDHDKALCYFERAVQASPADSH 393 (436)
Q Consensus 372 ~d~~eA~~~~~~al~~~p~~~~ 393 (436)
+ +++|+..|++|+.++|.++.
T Consensus 468 ~-~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 468 D-NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred C-HHHHHHHHHHHHhcCCCCch
Confidence 9 99999999999999998774
No 126
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.9e-09 Score=98.33 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH
Q 013821 248 LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH 327 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 327 (436)
.++-+.-++.-+..+|+|++-|..||.+|...++ +..|...|.+++++.|++++.+..++.++....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~-~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a------------ 204 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGR-ASDALLAYRNALRLAGDNPEILLGLAEALYYQA------------ 204 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc-hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------------
Confidence 4556666777778888888888888888888775 888888888888888888888888885543322
Q ss_pred HHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 328 IQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 328 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
......++...+++++..+|.+..+.+.||..+++.|+ |.+|...++..+...|.+.
T Consensus 205 -------~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~-~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 205 -------GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGD-YAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred -------CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCCC
Confidence 23456677888888888888888888888888888888 8888888888888776654
No 127
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.11 E-value=4.3e-09 Score=92.56 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..+.+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...++ +++|+.+|++++...|++...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-HDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHH
Confidence 455778999999999999999999999999887653 4688999999888875 999999999999999999999999
Q ss_pred HHHHHHHcc
Q 013821 307 YACFLWEME 315 (436)
Q Consensus 307 la~~~~~~g 315 (436)
+|.++...|
T Consensus 112 lg~~~~~~g 120 (172)
T PRK02603 112 IAVIYHKRG 120 (172)
T ss_pred HHHHHHHcC
Confidence 995554444
No 128
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=4.6e-10 Score=106.60 Aligned_cols=189 Identities=17% Similarity=0.135 Sum_probs=126.0
Q ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTY 289 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~ 289 (436)
++-+.++..++..+.... .++......|.++...|++++|++.+.+. .+.+.......++...++ ++.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R-~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNR-PDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCC-HHHHHHH
Confidence 444555555554443321 23445556666777778888887777654 556666667777777765 8888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
++.+-+.+.+..-.....+ ++....| .+.+|...|++.....+.++.+++.++.+.
T Consensus 154 l~~~~~~~eD~~l~qLa~a----------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 154 LKNMQQIDEDSILTQLAEA----------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHCCSCCHHHHHHHHH----------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHH----------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 8887777666554444444 4443333 578888888887776677788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh-HHHHHHHHHHHhhCCCChhHH
Q 013821 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED-EDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 368 ~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~l~p~~~~~~ 429 (436)
..+|+ |++|...+++++..+|.++.++.+++.+...+|+. +.+.+++.+.....|.++-..
T Consensus 212 l~~~~-~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 212 LQLGH-YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHCT--HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHhCC-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 88888 88888888888888888888888888888888877 445567777777777766543
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.11 E-value=1.1e-09 Score=84.11 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=91.5
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.+..+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 013821 280 HRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~ 299 (436)
++ +++|...++++++..|.
T Consensus 82 ~~-~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GK-YEEALEAYEKALELDPN 100 (100)
T ss_pred Hh-HHHHHHHHHHHHccCCC
Confidence 75 99999999999988763
No 130
>PRK11906 transcriptional regulator; Provisional
Probab=99.10 E-value=4.5e-09 Score=102.72 Aligned_cols=161 Identities=9% Similarity=-0.001 Sum_probs=134.5
Q ss_pred hhHHhhhhhCC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCH
Q 013821 202 EVVDLIMPNFD---DSAEAEEYYKRMI---DEYPCHPLLLRNYAQLLQKK---------GDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 202 ~~lg~~~~~~g---~~~~A~~~~~~al---~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 266 (436)
+..|...+..+ ..+.|+.+|.+++ +++|+.+.+|..++.|+... .+..+|.+..++|++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 44454443333 3568999999999 99999999999999998753 245689999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013821 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.++..+|.+++..++ ++.|+..|++|+.++|+.+.+|+..| ++..-.|+.++|.+.+
T Consensus 339 ~a~~~~g~~~~~~~~-~~~a~~~f~rA~~L~Pn~A~~~~~~~----------------------~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 339 KILAIMGLITGLSGQ-AKVSHILFEQAKIHSTDIASLYYYRA----------------------LVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHhhcc-hhhHHHHHHHHhhcCCccHHHHHHHH----------------------HHHHHcCCHHHHHHHH
Confidence 999999999999986 99999999999999999999999999 8899999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 013821 347 SRAILANPGDGEIMSQYAKL-VWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~-~~~~g~d~~eA~~~~~~al~ 386 (436)
+++++++|.-..+-...-++ .+.... .++|+..|-+--+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 435 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKETE 435 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhccc
Confidence 99999999876554444444 444456 7999998876443
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.10 E-value=1.8e-08 Score=91.09 Aligned_cols=166 Identities=15% Similarity=0.111 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS---NIL 304 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~---~~~ 304 (436)
.+..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..+ ++++|+..|++.++..|+++ .++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-DYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 45789999999999999999999999999998874 678999999999987 59999999999999999864 567
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhH---HHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHH
Q 013821 305 AAYACFLWEMEDDGEDDKAQEEHIQVLP---IQSKGDLEGAEEYFSRAILANPGDGE-----------------IMSQYA 364 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la 364 (436)
+.+|.++..... .. ...++...+|+..|+..+...|++.. --+.+|
T Consensus 83 Y~~g~~~~~~~~--------------~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 83 YMLGLSYYKQIP--------------GILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHHHH--------------HHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--------------cchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777866554321 22 44556678899999999999998632 224567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHH
Q 013821 365 KLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 365 ~~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~ 412 (436)
..|.+.|. +..|+..++.+++..|+.. .++..++..+.++|..+.|.
T Consensus 149 ~~Y~~~~~-y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGK-YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT--HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHccc-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88899999 9999999999999999976 67889999999999988553
No 132
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.08 E-value=2.1e-09 Score=82.57 Aligned_cols=93 Identities=17% Similarity=0.301 Sum_probs=88.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 410 (436)
.++...|++++|+..++++++..|.+..++..+|.++...++ +++|+.+|++++...|.+..++..++.++...|++++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK-YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence 778889999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 013821 411 DSKSSDQFQQVAPI 424 (436)
Q Consensus 411 A~~~~~~al~l~p~ 424 (436)
|...+.+++...|.
T Consensus 87 a~~~~~~~~~~~~~ 100 (100)
T cd00189 87 ALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHccCCC
Confidence 99999999988763
No 133
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.08 E-value=1.1e-07 Score=84.97 Aligned_cols=203 Identities=23% Similarity=0.290 Sum_probs=174.2
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMID--EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK- 274 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 274 (436)
.......+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+.+++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45677778888889999999999999997 678888999999999999999999999999999988887555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821 275 LVWELHRDQHRALTYFERAALAAPQ---DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
++...+. ++.|...|.+++...|. .......++ ..+...++++.|+..+.+++.
T Consensus 139 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 139 ALYELGD-YEEALELYEKALELDPELNELAEALLALG----------------------ALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHcCC-HHHHHHHHHHHHhcCCCccchHHHHHHhh----------------------hHHHHhcCHHHHHHHHHHHHh
Confidence 6777764 99999999999887773 344444444 556778999999999999999
Q ss_pred hCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 352 ANPG-DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 352 ~~p~-~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
..+. ....+..++.++...+. +.+|+..+.+++...|.....+..++..+...+..+++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGK-YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHccc-HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999 79999999999999998 999999999999999987778888888888888899999999999998876
No 134
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=3.7e-08 Score=95.24 Aligned_cols=54 Identities=13% Similarity=0.160 Sum_probs=45.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 368 ~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
.++++ ++....+|++.|+..|.+..+|..+|.+-..+|+.+.|...|+-|+..+
T Consensus 448 lqL~e-fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 448 LQLRE-FDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHhh-HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 45566 8888888888888899988999999999999999999999998887754
No 135
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=7.8e-10 Score=81.45 Aligned_cols=68 Identities=25% Similarity=0.396 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
++.+|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+++++.+|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555555555555555555555555555555555555555555555554125555555555555554
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.07 E-value=6.1e-08 Score=89.87 Aligned_cols=181 Identities=13% Similarity=0.040 Sum_probs=137.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 013821 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGES---WMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNI 303 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~ 303 (436)
..+..++..|..+...|+|++|++.|++++...|..+.+ .+.+|.+++..+ ++++|+..|++.++.+|++ ..+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~-~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCcCCCchHHH
Confidence 356778899999999999999999999999999987655 489999999987 5999999999999999886 456
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHH-hHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHH
Q 013821 304 LAAYACFLWEMEDDGEDDKAQEEHIQV-LPIQSKGDLEGAEEYFSRAILANPGDGE-----------------IMSQYAK 365 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~ 365 (436)
++.+|.+....+.. .+..+... .....+....+|+..|++.++..|+..- --+.+|.
T Consensus 109 ~Y~~g~~~~~~~~~-----~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 109 LYMRGLTNMALDDS-----ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred HHHHHHhhhhcchh-----hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777554333210 00000000 0111122245688889999999887532 2246677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHH
Q 013821 366 LVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 366 ~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~ 417 (436)
.|++.|. |..|+.-++.+++..|+.+ +++..+...|..+|..++|.+....
T Consensus 184 ~Y~~~~~-y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 184 YYTKRGA-YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHcCc-hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8899999 9999999999999998754 7889999999999999999876543
No 137
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=5.6e-09 Score=91.44 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHH
Q 013821 248 LYRAEDYYNHATMADPGD--GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 322 (436)
+..+...+...++.++.+ ...++.+|.++...+. +++|+..|++++.+.|+. +.++.++|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~~~~lg-------------- 79 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE-YAEALQNYYEAMRLEIDPYDRSYILYNIG-------------- 79 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccchhhHHHHHHHH--------------
Confidence 445555554444444444 5566778877777764 888888888888876653 34677777
Q ss_pred HHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhcCCHH-------HHHHHHHHHHHhC
Q 013821 323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW-------ELHHDHD-------KALCYFERAVQAS 388 (436)
Q Consensus 323 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~d~~-------eA~~~~~~al~~~ 388 (436)
.++...|++++|+.+|++++.++|.....+.++|.++. .+|+ ++ +|+.+|++++..+
T Consensus 80 --------~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 80 --------LIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGD-SEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred --------HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHccc-HHHHHHHHHHHHHHHHHHHHhC
Confidence 77888888888888888888888888888888888887 5555 55 4444455555566
Q ss_pred CCC
Q 013821 389 PAD 391 (436)
Q Consensus 389 p~~ 391 (436)
|.+
T Consensus 151 p~~ 153 (168)
T CHL00033 151 PGN 153 (168)
T ss_pred ccc
Confidence 653
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.06 E-value=7.9e-10 Score=81.43 Aligned_cols=68 Identities=13% Similarity=0.284 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCC
Q 013821 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE-EDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 355 ~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~l~p 423 (436)
+++.+|..+|.+++..|+ +++|+.+|+++++++|+++.++.++|.++..+| ++++|++.++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 357899999999999999 999999999999999999999999999999999 79999999999999987
No 139
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.05 E-value=1.2e-08 Score=97.10 Aligned_cols=185 Identities=18% Similarity=0.193 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHcCCHHHH
Q 013821 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--G----DGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~d~~~A 286 (436)
++++|..+|+++ |.+|...+++++|.+.|.++....- + -...+...+.++... ++++|
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~--~~~~A 93 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG--DPDEA 93 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--THHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--CHHHH
Confidence 566666666655 6667777777777777777765421 1 134455566665444 58899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHH
Q 013821 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAILANPG--D----GEI 359 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~ 359 (436)
+.+|++++.+. ...|++..+...+...- .+|... |++++|+++|++|+++... . ..+
T Consensus 94 i~~~~~A~~~y--------------~~~G~~~~aA~~~~~lA--~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 94 IECYEKAIEIY--------------REAGRFSQAAKCLKELA--EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHHHH--------------HHCT-HHHHHHHHHHHH--HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHH--------------HhcCcHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 99999887653 22333333322222222 778787 9999999999999987321 1 457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------H-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 360 MSQYAKLVWELHHDHDKALCYFERAVQASPAD------S-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
+..+|.++..+|+ |++|+..|++.....-++ . ..+...+.+++..|+...|.+.+++....+|.|.....
T Consensus 158 ~~~~A~l~~~l~~-y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 158 LLKAADLYARLGR-YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 7899999999999 999999999998754221 1 34567778899999999999999999999998877543
No 140
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=9.5e-09 Score=93.93 Aligned_cols=205 Identities=13% Similarity=0.046 Sum_probs=158.6
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
.+..+|++|++++.--.+..|.+-..+..+|.||+...+|..|.++|++...+.|......+..+..++..+. +.+|+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i-~ADALr 99 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI-YADALR 99 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence 5667889999999998899998888899999999999999999999999999999988888888888888876 888887
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHH-H---------hHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 289 YFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQ-V---------LPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 289 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~---------~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
......+...-.......-+.+.+..+++..+..++++.-. . -+.++.|+++.|++-|+.|++...-++-
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 76554432111223333445555666666666666664432 1 6677899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCH-------------------------HHHHHHHHHHHHCCChH
Q 013821 359 IMSQYAKLVWELHHDHDKALCYFERAVQA----SPADS-------------------------HVLAAYACFLWETEEDE 409 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~----~p~~~-------------------------~~~~~la~~~~~~g~~~ 409 (436)
+-++++.+.++.++ ++.|+++....++. +|+.. +++...+.++++.++++
T Consensus 180 lAYniALaHy~~~q-yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQ-YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hHHHHHHHHHhhhh-HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 99999999999999 99999988776653 44321 45556677889999998
Q ss_pred HHHHHH
Q 013821 410 DDSKSS 415 (436)
Q Consensus 410 eA~~~~ 415 (436)
.|.+.+
T Consensus 259 AA~eaL 264 (459)
T KOG4340|consen 259 AAQEAL 264 (459)
T ss_pred HHHHHh
Confidence 886543
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=2e-09 Score=102.25 Aligned_cols=169 Identities=19% Similarity=0.126 Sum_probs=140.6
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
......|.++...|++++|++.+.+. .+.++......++...++++.|.+.++.+.+.+.+..-+...-+.+...
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 34455667888889999999999875 5788888999999999999999999999988887776666666666666
Q ss_pred HcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 279 LHR-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 279 ~~~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (436)
.|+ .+.+|...|+...+..+..+..+..++ .++..+|+|++|...+++++..+|.++
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A----------------------~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLA----------------------VCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--SHHHHHHHH----------------------HHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred hCchhHHHHHHHHHHHHhccCCCHHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 665 489999999998888888999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~ 394 (436)
+++.+++.+...+|+..+.+.+++.+....+|+++.+
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999994477888999988999997754
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.01 E-value=1.8e-08 Score=88.55 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
....+++.+|.++...+ ++++|+.+|+++++..|+. ..++..+| .++...|+++
T Consensus 33 ~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~ 89 (172)
T PRK02603 33 KEAFVYYRDGMSAQADG-EYAEALENYEEALKLEEDPNDRSYILYNMG----------------------IIYASNGEHD 89 (172)
T ss_pred hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhccchHHHHHHHHH----------------------HHHHHcCCHH
Confidence 45667888888887776 4999999999999887653 45777888 8888889999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
+|+.+|++++...|.+...+..+|.++..+|+ ...+...++.+
T Consensus 90 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~a~~~~~~A 132 (172)
T PRK02603 90 KALEYYHQALELNPKQPSALNNIAVIYHKRGE-KAEEAGDQDEA 132 (172)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHhHhhCHHHH
Confidence 99999999999999999999999999988877 54444444433
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.00 E-value=1.8e-08 Score=103.02 Aligned_cols=152 Identities=10% Similarity=-0.029 Sum_probs=116.5
Q ss_pred HhCCCCHHHHHH--HHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013821 260 MADPGDGESWMQ--YAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 260 ~~~p~~~~~~~~--la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
..-|.+..+|-. .|.-+.... +++.+|+.+|+++++++|++..++..++.++.....+.. ..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~--------------~~ 396 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP--------------LD 396 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC--------------cc
Confidence 344555555433 333333221 237899999999999999999999988865533221100 00
Q ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q 013821 336 KGDLEGAEEYFSRAILA--NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 413 (436)
..++.++....++++.+ +|.++.++..+|......|+ +++|...+++|+.++|. ..+|..+|.++...|++++|++
T Consensus 397 ~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~-~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 397 EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK-TDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 12456677777777774 77788899999999998998 99999999999999994 8899999999999999999999
Q ss_pred HHHHHHhhCCCChh
Q 013821 414 SSDQFQQVAPIRQG 427 (436)
Q Consensus 414 ~~~~al~l~p~~~~ 427 (436)
.|++|+.++|.++.
T Consensus 475 ~~~~A~~L~P~~pt 488 (517)
T PRK10153 475 AYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHhcCCCCch
Confidence 99999999998764
No 144
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.99 E-value=2.9e-10 Score=105.46 Aligned_cols=223 Identities=11% Similarity=0.012 Sum_probs=167.7
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
...|+.|+++|.|++|+.+|.+++..+|.++..+.+.|.+|++..++..|...+..|+.++.....+|...+.+-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999888986
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------CchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHH
Q 013821 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEME---------DDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~ 348 (436)
..+|.+.++.++++.|++.+....++.+-.-.. .+-.|++-..+.+.. ..+...|.++.++.+|.+
T Consensus 181 -~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~ 259 (536)
T KOG4648|consen 181 -NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVS 259 (536)
T ss_pred -HHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeec
Confidence 999999999999999998877665554322110 011122222222211 566777888888888877
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
-+....++.....+ +..+.+..+ +.+|+..+.+++..+|.........+.+---.|...++...++.++.+.|....
T Consensus 260 ~~A~~~~~~~L~~~-~~~~~KI~~-~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 260 PRATIDDSNQLRIS-DEDIDKIFN-SNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred cccccCccccCccc-HHHHHHHhh-cchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence 77666665555545 666677777 889988888888887765554444455544555666666666767666665433
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.98 E-value=1.4e-09 Score=83.51 Aligned_cols=82 Identities=15% Similarity=0.312 Sum_probs=73.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 013821 335 SKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 412 (436)
.+|+|+.|+.+|+++++..|. +...++.+|.++++.|+ +++|+.++++ +..++.+......+|.++.++|++++|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK-YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH-HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC-HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 368999999999999999995 46778889999999999 9999999999 8888888899999999999999999999
Q ss_pred HHHHHH
Q 013821 413 KSSDQF 418 (436)
Q Consensus 413 ~~~~~a 418 (436)
+.|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.98 E-value=3.7e-08 Score=83.99 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 013821 282 DQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-- 356 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-- 356 (436)
+...+...+++.++..|+. ..+.+.++ .++...|++++|+..|+.++...|+.
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA----------------------~~~~~~g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLA----------------------KAAYEQGDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence 5777777788888888877 44455566 77778888888888888888877654
Q ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821 357 -GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 357 -~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 419 (436)
..+.+.++.++...|+ +++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 84 ~~~a~l~LA~~~~~~~~-~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQ-YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3577788888888888 8888888866 33334456777888888888899988888888764
No 147
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.2e-08 Score=97.45 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=98.9
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC---------------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
.....|+.+++.|+|..|...|++++..-.. -..++.+++.|+.++++|.+|+....++|.++|.
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 4455689999999999999999999885321 1257899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 265 ~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
|..++++.|.++..++ +|+.|+..|+++++++|.|..+...+..+.
T Consensus 290 N~KALyRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 290 NVKALYRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred chhHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9999999999999998 599999999999999999999998888433
No 148
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.1e-08 Score=95.89 Aligned_cols=146 Identities=15% Similarity=0.093 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
......|+.|++.|+|..|...|++++..-..... -+.++... ..++ -..++.+++
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~-------------~~~ee~~~--~~~~-----k~~~~lNlA---- 264 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS-------------FDEEEQKK--AEAL-----KLACHLNLA---- 264 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc-------------CCHHHHHH--HHHH-----HHHHhhHHH----
Confidence 34567899999999999999999999875321100 00000000 0000 123345555
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
.++.++++|.+|+.++.++|.++|+|..+++..|.++..+|+ |+.|+..|++++++.|.|.
T Consensus 265 ------------------~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 265 ------------------ACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE-YDLARDDFQKALKLEPSNK 325 (397)
T ss_pred ------------------HHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCcH
Confidence 556666666666666666666666666666666666666666 6666666666666666666
Q ss_pred HHHHHHHHHHHHCCChHHH-HHHHHHHHhh
Q 013821 393 HVLAAYACFLWETEEDEDD-SKSSDQFQQV 421 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~eA-~~~~~~al~l 421 (436)
.+...+..+..+..++.+. .+.|.+.+..
T Consensus 326 a~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 326 AARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666665555544443 4555555543
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.96 E-value=1.7e-09 Score=83.05 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013821 211 FDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
.|++++|+.+|+++++..|. +...++.+|.+++..|+|++|+.++++ .+.++.+....+.+|.+++.+++ +++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-YEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-HHHHHH
Confidence 58999999999999999995 457788899999999999999999999 88888888999999999999986 999999
Q ss_pred HHHHH
Q 013821 289 YFERA 293 (436)
Q Consensus 289 ~~~~a 293 (436)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.96 E-value=2e-09 Score=78.31 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=37.4
Q ss_pred HHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45556666666666666666666666666666666666666666666666666666666654
No 151
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=3.5e-08 Score=90.30 Aligned_cols=183 Identities=14% Similarity=0.073 Sum_probs=151.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
+.+..+|.+|++.+.--.+.+|.+...+..+|.||+..+. |..|..+|++.-.+.|......+..+..++..+.+.+|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~-f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE-FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 3567889999999999999999999999999999999985 999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 322 KAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANP--GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 322 ~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
+........ .+.+..+++..+.... +.-| +++....+.|.++++.|+ +++|++-|+.|++.
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv----eQlp~en~Ad~~in~gCllykegq-yEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV----EQLPSENEADGQINLGCLLYKEGQ-YEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH----HhccCCCccchhccchheeecccc-HHHHHHHHHHHHhh
Confidence 877543321 3333444544444333 3334 568899999999999999 99999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCCChhHHh
Q 013821 388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV----APIRQGAVT 430 (436)
Q Consensus 388 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l----~p~~~~~~~ 430 (436)
..-++-.-++++.++++.++++.|+++...+++. .|.+.-+++
T Consensus 174 sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~ 220 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMT 220 (459)
T ss_pred cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence 9999999999999999999999999887766654 465554443
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.95 E-value=4e-08 Score=83.80 Aligned_cols=117 Identities=17% Similarity=0.236 Sum_probs=98.9
Q ss_pred hCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCH
Q 013821 210 NFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~ 283 (436)
..++...+...+++.+..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ..+.+.+|.++...++ +
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~-~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ-Y 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-H
Confidence 4689999999999999999998 4788899999999999999999999999988665 4688899999999875 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q 013821 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI 350 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 350 (436)
++|+..++. +.-.+-.+.++..+| .++...|++++|+..|++||
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~G----------------------di~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLG----------------------DIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHhC
Confidence 999999966 333344566677778 88888888899988888874
No 153
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=4.6e-07 Score=89.99 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHh---------------------
Q 013821 338 DLEGAEEYFSRAILANPGD-GEIMSQYAKLVWELHHDHDKALCYFE--------RAVQA--------------------- 387 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~--------~al~~--------------------- 387 (436)
.+.+|++++....+.+|.+ ..+...++.+...+|+ +..|++.+. ...+.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn-~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN-PEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCc
Confidence 3555666666666666665 4556666666666666 777766666 22221
Q ss_pred -------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 388 -------------------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 388 -------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
.+.....+...+.+-.+.|+.++|...+++.+...|+......
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 1111134456677777889999999999999998887665443
No 154
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.92 E-value=5.8e-07 Score=85.61 Aligned_cols=205 Identities=17% Similarity=0.066 Sum_probs=151.5
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+.+.+..|+.++....+...--.....+.++...|++..|..-..++++..|.++.++.....+|...|+|.+...++.
T Consensus 132 gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 132 GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35556677777777774433445666677788889999999999999999999999999999999999999999988888
Q ss_pred HHHHhCCC------------------------------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 257 HATMADPG------------------------------------------DGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 257 ~al~~~p~------------------------------------------~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
+.-+..-- ++.+...++.-+...+ ++++|.+..+.++
T Consensus 212 ~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~-~~~~A~~~i~~~L 290 (400)
T COG3071 212 KLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG-DHDEAQEIIEDAL 290 (400)
T ss_pred HHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC-ChHHHHHHHHHHH
Confidence 87654211 1444455665556665 5888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
+..-+.. ....++ ....++...-++..+..++. .++.+.+.|.+|..+|+.+++..|. ...+..
T Consensus 291 k~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~ 366 (400)
T COG3071 291 KRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAE 366 (400)
T ss_pred HhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHH
Confidence 7653332 111111 22333444444444444444 8899999999999999999999887 788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 363 YAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 363 la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
+|.++.++|+ ..+|...++.++..
T Consensus 367 la~~~~~~g~-~~~A~~~r~e~L~~ 390 (400)
T COG3071 367 LADALDQLGE-PEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHHHH
Confidence 9999999999 99999999999854
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.89 E-value=6e-09 Score=75.71 Aligned_cols=65 Identities=28% Similarity=0.511 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~ 301 (436)
+.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...++ +++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR-YDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCC
Confidence 4689999999999999999999999999999999999999999875 9999999999999999875
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.88 E-value=3e-08 Score=94.40 Aligned_cols=200 Identities=19% Similarity=0.127 Sum_probs=140.8
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP--CH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--G----DG 266 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~ 266 (436)
..+...|+.+...+++++|...|.++....- ++ ...+...+.++.+. ++++|+.+|++++.+.- + -+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4556677888888999999999999987542 11 25667777777665 99999999999998732 2 25
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
..+..+|.+|....+++++|+++|++|+++..... ..+..++ .++...|+|+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A----------------------~l~~~l~~y~ 172 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA----------------------DLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----------------------HHHHHTT-HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH----------------------HHHHHhCCHH
Confidence 67889999988772369999999999998753221 2233444 8888999999
Q ss_pred HHHHHHHHHHHhCCCC------H-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH--CC
Q 013821 341 GAEEYFSRAILANPGD------G-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-----HVLAAYACFLWE--TE 406 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~------~-~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-----~~~~~la~~~~~--~g 406 (436)
+|++.|+++....-++ . ..++..+.|+...|+ +..|...+++....+|... .....+..++-. ..
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e 251 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-YVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVE 251 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHH
Confidence 9999999998764221 1 345667778888888 9999999999999998653 444445555433 34
Q ss_pred ChHHHHHHHHHHHhhC
Q 013821 407 EDEDDSKSSDQFQQVA 422 (436)
Q Consensus 407 ~~~eA~~~~~~al~l~ 422 (436)
.+.+++..|.+...++
T Consensus 252 ~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 252 AFTEAVAEYDSISRLD 267 (282)
T ss_dssp CHHHHCHHHTTSS---
T ss_pred HHHHHHHHHcccCccH
Confidence 5677777776655554
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=98.87 E-value=2.4e-08 Score=84.79 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=91.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 410 (436)
.-++.+|++++|...|+-+...+|.+++.|..||.++..+++ |++|+..|..+..++++++...+..|.|+..+|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 778889999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChhHHhhh
Q 013821 411 DSKSSDQFQQVAPIRQGAVTTA 432 (436)
Q Consensus 411 A~~~~~~al~l~p~~~~~~~~a 432 (436)
|+..|..++.. |.+......|
T Consensus 124 A~~~f~~a~~~-~~~~~l~~~A 144 (165)
T PRK15331 124 ARQCFELVNER-TEDESLRAKA 144 (165)
T ss_pred HHHHHHHHHhC-cchHHHHHHH
Confidence 99999999984 5555444433
No 158
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=7.8e-07 Score=95.78 Aligned_cols=202 Identities=12% Similarity=0.089 Sum_probs=122.2
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHH-hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMID-EYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (436)
+....|+..-....+.++.++|.+..++||. +++... .+|..+-+....-|.-+.-.+.|++|.+... .-.++.
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~ 1534 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHL 1534 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHH
Confidence 3444454444444555555555555555554 222111 2233333333333344444444555444321 122344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI 350 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 350 (436)
.|..+|....+ +++|.++|+..++...+...+|..++ ..+.++.+-++|...+.+||
T Consensus 1535 ~L~~iy~k~ek-~~~A~ell~~m~KKF~q~~~vW~~y~----------------------~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1535 KLLGIYEKSEK-NDEADELLRLMLKKFGQTRKVWIMYA----------------------DFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHhhc-chhHHHHHHHHHHHhcchhhHHHHHH----------------------HHHhcccHHHHHHHHHHHHH
Confidence 44445444443 55555555555555555555555555 55666677778888888888
Q ss_pred HhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 351 LANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 351 ~~~p~--~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
+.-|. +.+.....|.+.++.|+ .+.+..+|+..+..+|.-.+.|..+...-.+.|+.+.....|++++.+.
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GD-aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGD-AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCC-chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 88877 67777788888888888 7888888888888888888888888888888888888888888887763
No 159
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=7.9e-07 Score=98.49 Aligned_cols=220 Identities=16% Similarity=0.127 Sum_probs=162.4
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESW 269 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 269 (436)
...+|.++...|++++|..+++++++..+... .++..+|.++...|++++|..++++++...... ..++
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 34467788899999999999999998655432 356778999999999999999999998764321 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------
Q 013821 270 MQYAKLVWELHRDQHRALTYFERAALAAPQ--------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------- 330 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------- 330 (436)
..+|.+++..| ++++|...+++++.+... ....+..++.+++..|++++|...+.+.+..
T Consensus 535 ~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 535 LQQSEILFAQG-FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 77888888877 599999999999886321 2334567888899999999998888765442
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH---H-HHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----H
Q 013821 331 ------LPIQSKGDLEGAEEYFSRAILANPGD---GEIMS---Q-YAKLVWELHHDHDKALCYFERAVQASPADS----H 393 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~---~-la~~~~~~g~d~~eA~~~~~~al~~~p~~~----~ 393 (436)
.++...|++++|...+.+++.+.... ..... . ....+...|+ .+.|..++.......+... .
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD-KEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC-HHHHHHHHHhcCCCCCccchhHHH
Confidence 57778899999999999997764321 11111 1 1233344666 8888888777654332222 2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 394 VLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
.+..++.++...|++++|+..+.+++...
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 25678999999999999999999998864
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.85 E-value=1.6e-07 Score=87.76 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=31.0
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
.+|+..|++++|+..|++++...|+ .+++++.+|.++..+|+ +++|+..|+++++..|+..
T Consensus 188 ~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 188 QLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-TAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCH
Confidence 4444455555555555555554443 24445555555555555 5555555555555555443
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.85 E-value=9.5e-08 Score=89.32 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=89.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCC
Q 013821 333 IQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETE 406 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g 406 (436)
....|+|++|+..|+..++..|++ +.+++.+|.+|+..|+ +++|+..|++++...|++ +++++.+|.++..+|
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~-~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK-KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 356799999999999999999998 5899999999999999 999999999999998875 588999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCChhHHh
Q 013821 407 EDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 407 ~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
++++|+..|+++++..|+...+..
T Consensus 232 ~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHH
Confidence 999999999999999999876544
No 162
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.85 E-value=1.9e-06 Score=76.91 Aligned_cols=190 Identities=24% Similarity=0.259 Sum_probs=167.8
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821 211 FDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATM--ADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+..++.++...+. +..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK-YEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh-HHHH
Confidence 46778888899999888886 378889999999999999999999999998 788889999999999888875 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHH
Q 013821 287 LTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL-PIQSKGDLEGAEEYFSRAILANP---GDGEIMSQ 362 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~ 362 (436)
+..+.+++...+.......... . ++...|+++.|...|.+++...| .....+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 172 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLA----------------------LGALYELGDYEEALELYEKALELDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 9999999999888755555555 5 68889999999999999998777 45667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 363 YAKLVWELHHDHDKALCYFERAVQASPA-DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 363 la~~~~~~g~d~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
++..+...++ +++|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|.
T Consensus 173 ~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 173 LGALLEALGR-YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hhhHHHHhcC-HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 7777788888 99999999999999999 6899999999999999999999999999999886
No 163
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.84 E-value=1.4e-06 Score=79.11 Aligned_cols=184 Identities=15% Similarity=0.110 Sum_probs=130.8
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---ESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 272 (436)
.-|.+-|...++.|++++|+..|+.+...+|..+ .+.+.++.++++.+++++|+..+++-+.+.|.++ .+++..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 4455556666667999999999999999998765 7899999999999999999999999999988764 567777
Q ss_pred HHHHHHHcC----C---HHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821 273 AKLVWELHR----D---QHRALTYFERAALAAPQDSNI---LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 273 a~~~~~~~~----d---~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
|.+++..-. | ..+|+..|+..+...|+..-+ ...+..+--.+...+ -.+. ..|.+.|.|..|
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E-------m~Ia-ryY~kr~~~~AA 186 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE-------MAIA-RYYLKRGAYVAA 186 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH-------HHHH-HHHHHhcChHHH
Confidence 777654422 1 257889999999999985432 222221111111111 1111 778888888888
Q ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCH
Q 013821 343 EEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADS 392 (436)
Q Consensus 343 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-p~~~ 392 (436)
+..++.+++..|+. .+++..+..+|..+|- .++|...-. .|..+ |+..
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl-~~~a~~~~~-vl~~N~p~s~ 238 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGL-TDEAKKTAK-VLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCC-hHHHHHHHH-HHHhcCCCCc
Confidence 88888888886654 4677778888888888 777765544 44444 4443
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=98.83 E-value=8.5e-08 Score=81.42 Aligned_cols=97 Identities=14% Similarity=-0.012 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
.+..+.+|.-++..|++++|..+|+-....+|.+++.|+.||.++..++. |++|+..|..+..++++++...+..|
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~dp~p~f~ag--- 112 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKNDYRPVFFTG--- 112 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCCCCccchHH---
Confidence 34455555555556666666666655555555555555555555555443 55555555555555555555555555
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
.++..+|+.+.|..+|+.++.
T Consensus 113 -------------------qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 -------------------QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -------------------HHHHHhCCHHHHHHHHHHHHh
Confidence 455555555555555555554
No 165
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.79 E-value=2.2e-07 Score=91.38 Aligned_cols=117 Identities=22% Similarity=0.198 Sum_probs=75.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCch
Q 013821 239 AQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDG 318 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 318 (436)
-.++...++++.|++.+++..+.+|+ +...++.++...++ ..+|++.+.++++..|.+...+...+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~-E~~AI~ll~~aL~~~p~d~~LL~~Qa---------- 241 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE-EVEAIRLLNEALKENPQDSELLNLQA---------- 241 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc-HHHHHHHHHHHHHhCCCCHHHHHHHH----------
Confidence 34444556677777777766666654 44456666655543 56677777777766676666666666
Q ss_pred HHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013821 319 EDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 319 ~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~ 382 (436)
..+...++++.|+.+.++++.+.|.+...|+.|+.+|..+|+ +++|+..+.
T Consensus 242 ------------~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d-~e~ALlaLN 292 (395)
T PF09295_consen 242 ------------EFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD-FENALLALN 292 (395)
T ss_pred ------------HHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC-HHHHHHHHh
Confidence 556666666777777777777777777777777777777766 777765554
No 166
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.79 E-value=1e-06 Score=75.58 Aligned_cols=153 Identities=17% Similarity=0.122 Sum_probs=110.4
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM-ADPGDGESWMQYAKLVWELHRDQHR 285 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~d~~~ 285 (436)
...+.=+.+....-..+.++..| ...-.+.+|..+...|++.+|..+|++++. +...++..+..++...+..++ +..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~-~A~ 142 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE-FAA 142 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc-HHH
Confidence 33444455666666666666666 345567788888888888888888888875 566777888888888888764 888
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 286 ALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY 363 (436)
Q Consensus 286 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 363 (436)
|...+++..+.+|. .++....++ +.+..+|++.+|...|+.++...|+ +.+...+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~a----------------------R~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y 199 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFA----------------------RTLAAQGKYADAESAFEVAISYYPG-PQARIYY 199 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHH----------------------HHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHH
Confidence 88888888887775 455666667 7777778888888888888888777 6777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 013821 364 AKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 364 a~~~~~~g~d~~eA~~~~~~al 385 (436)
+..+..+|+ .++|..-+....
T Consensus 200 ~e~La~qgr-~~ea~aq~~~v~ 220 (251)
T COG4700 200 AEMLAKQGR-LREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcc-hhHHHHHHHHHH
Confidence 778888887 666665554443
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.79 E-value=1.7e-08 Score=73.97 Aligned_cols=66 Identities=24% Similarity=0.225 Sum_probs=54.2
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
+..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456888888888888888888888888888888888888888888888888888888777776664
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.74 E-value=2.9e-07 Score=75.18 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=26.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPG---DGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~d~~eA~~~~~~al 385 (436)
..+...|++++|+..+++++...|+ +..+...++.++...|+ +++|+..+..++
T Consensus 46 stlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr-~~eAl~~~l~~l 102 (120)
T PF12688_consen 46 STLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR-PKEALEWLLEAL 102 (120)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 4444445555555555555554444 44444445555555555 555555554444
No 169
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.74 E-value=3.5e-07 Score=89.93 Aligned_cols=116 Identities=18% Similarity=0.120 Sum_probs=101.7
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 013821 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHR 285 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~ 285 (436)
.++...++++.|+.+|++..+.+|+ +...++.++...++..+|+..+.++++..|.+...+...+..+...++ ++.
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~-~~l 252 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK-YEL 252 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHH
Confidence 4555678999999999999999874 567799999999999999999999999999999999999999998875 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 286 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
|+++.++++.+.|.+...|+.|+ .+|...|+++.|+..+.
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La----------------------~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLA----------------------ECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHH----------------------HHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999 66666666666665444
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.74 E-value=3.3e-08 Score=72.37 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=59.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
...|++++|+..|++++..+|++..+++.+|.++...|+ +++|...+++++..+|+++.++..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ-YDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 468999999999999999999999999999999999999 9999999999999999988877777653
No 171
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.71 E-value=3.9e-06 Score=84.26 Aligned_cols=47 Identities=9% Similarity=-0.072 Sum_probs=39.7
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHh
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE 227 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 227 (436)
+.+.....|+..-.-..|--|..|+..|.+.|.+++|...|++++..
T Consensus 231 nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 231 NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 66777787877666456788999999999999999999999999874
No 172
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.70 E-value=1.5e-06 Score=81.70 Aligned_cols=221 Identities=15% Similarity=0.090 Sum_probs=133.7
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH-----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GE 267 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 267 (436)
.++.+++..+.+..++.+++.+-+..+...... ..+...+|.++.-++.++++++.|++|+.+.-++ -.
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 345555555555555666665555555432211 1444556666666666666666666666542221 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQ----------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
++..+|.++..+. |+++|+-+..+|.++-.. ...+++.++..+..+|....|.+..+++.+.
T Consensus 164 vcv~Lgslf~~l~-D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLK-DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHH-hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 5555665555554 466666666666554321 1234455566666666666666655544443
Q ss_pred -----------hHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHhC
Q 013821 331 -----------LPIQSKGDLEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHD-----KALCYFERAVQAS 388 (436)
Q Consensus 331 -----------~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~-----eA~~~~~~al~~~ 388 (436)
.+|...|+.+.|..-|++|+..-.. ..+++...+.++....- .. +|++.-++++++.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~-~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRL-QNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHH
Confidence 8889999999999999999876321 24566666666654433 33 4888888888775
Q ss_pred CCCH------HHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 389 PADS------HVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 389 p~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
..-. ..+..++.+|..+|..++-...+.++-+.
T Consensus 322 ~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 322 SSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4422 67788999999999888877777665543
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.70 E-value=1e-07 Score=70.86 Aligned_cols=68 Identities=25% Similarity=0.207 Sum_probs=45.1
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
.++...+++++|++++++++..+|+++..|..+|.++..+|++++|++.|+++++..|+++.+...++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45566666777777777777777766666666777777777777777777776666666665544433
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.70 E-value=4.9e-07 Score=73.82 Aligned_cols=90 Identities=20% Similarity=0.178 Sum_probs=81.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~---~~~~~~~la~~~~~ 404 (436)
+++...|+.++|+.+|++++...... ..++..+|.++..+|+ +++|+..+++++...|+ +..+...++.++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 88999999999999999999986544 5689999999999999 99999999999999898 77788889999999
Q ss_pred CCChHHHHHHHHHHHhh
Q 013821 405 TEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 405 ~g~~~eA~~~~~~al~l 421 (436)
.|+.++|+..+-.++.-
T Consensus 88 ~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAE 104 (120)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887753
No 175
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=2.8e-07 Score=79.86 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=97.2
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
....-|+-++..|+|++|..-|..+|+.-|... ..|.+.|.++.+++.++.|++.+.++++++|.+..++...|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 345567888999999999999999999988654 568899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|..+.+ |++|++.|++.++.+|....+....+
T Consensus 177 ayek~ek-~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 177 AYEKMEK-YEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHhhhh-HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 9999976 99999999999999999877766555
No 176
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.67 E-value=5.4e-08 Score=90.58 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+...|+-|+++|.|++|+.+|.+++..+|.++..+.+.|.+|+++.+ |..|...+..|+.++.....+|...+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~-FA~AE~DC~~AiaLd~~Y~KAYSRR~------ 172 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS-FAQAEEDCEAAIALDKLYVKAYSRRM------ 172 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH-HHHHHHhHHHHHHhhHHHHHHHHHHH------
Confidence 56789999999999999999999999999999999999999999987 99999999999999988888888888
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
.+...+|...+|.+.++.+|++.|++.+..-.++.+
T Consensus 173 ----------------~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 173 ----------------QARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred ----------------HHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 777788899999999999999999877766555543
No 177
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=2.2e-07 Score=80.49 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=91.3
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDG-----EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.-++..|+|++|...|..||.+.|... ..|.+.|.++++++. ++.|+..+.++++++|.+..++...+.+|.++
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 667889999999999999999998753 467889999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh
Q 013821 406 EEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 406 g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
..+++|++-|+++++++|..+.+..
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHH
Confidence 9999999999999999998876554
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.65 E-value=5.4e-06 Score=71.24 Aligned_cols=161 Identities=18% Similarity=0.144 Sum_probs=129.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCch
Q 013821 240 QLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL-AAPQDSNILAAYACFLWEMEDDG 318 (436)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~ 318 (436)
....++=+++.+..-..+.+...|... -.+.+|..+.+.|+ +.+|...|++++. +..+++..+..++
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr-~~EA~~hy~qalsG~fA~d~a~lLglA---------- 131 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAELGR-YHEAVPHYQQALSGIFAHDAAMLLGLA---------- 131 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhh-hhhhHHHHHHHhccccCCCHHHHHHHH----------
Confidence 334444455556555566666666543 45778989999986 9999999999986 4577888999999
Q ss_pred HHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 319 EDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 319 ~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~ 396 (436)
...+..+++..|...+++..+.+|. .++....+|+++..+|+ +.+|...|+.++...|+ +.+..
T Consensus 132 ------------~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~~ypg-~~ar~ 197 (251)
T COG4700 132 ------------QAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK-YADAESAFEVAISYYPG-PQARI 197 (251)
T ss_pred ------------HHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC-chhHHHHHHHHHHhCCC-HHHHH
Confidence 8888899999999999999999885 57788999999999999 99999999999999998 78889
Q ss_pred HHHHHHHHCCChHHHHHHHHHH----HhhCCCCh
Q 013821 397 AYACFLWETEEDEDDSKSSDQF----QQVAPIRQ 426 (436)
Q Consensus 397 ~la~~~~~~g~~~eA~~~~~~a----l~l~p~~~ 426 (436)
.++..+.++|+.++|...+..+ ..-.|+|.
T Consensus 198 ~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 198 YYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 9999999999988877665543 34445543
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.62 E-value=2.8e-07 Score=68.42 Aligned_cols=68 Identities=32% Similarity=0.370 Sum_probs=60.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la 399 (436)
.+|...++|++|++++++++.++|+++..|..+|.++..+|+ +.+|+..|+++++..|+++.+....+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR-YEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc-HHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 577889999999999999999999999999999999999999 99999999999999998887665554
No 180
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.57 E-value=2e-05 Score=82.10 Aligned_cols=112 Identities=14% Similarity=0.046 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
+++.+|+....+.++..|+..-+....|.++.++|+.++|...++..-...+++...+-.+-.+|..+++ +++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~-~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK-LDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-hhHHHHHHH
Confidence 5666666666666666666666666666666666666666655555555555566666666666666654 666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
+++..+|. ...+..+-.++.+.+.+.+..++.-
T Consensus 102 ~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~ 134 (932)
T KOG2053|consen 102 RANQKYPS-EELLYHLFMAYVREKSYKKQQKAAL 134 (932)
T ss_pred HHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 5555556666666655544444333
No 181
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.56 E-value=8.2e-07 Score=76.20 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
|+.|.+.++.....+|.+.+.++++|.++..+.++.... ....-+++|+.-|++||.++|+..+++++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~------------es~~miedAisK~eeAL~I~P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGP------------ESKKMIEDAISKFEEALKINPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HH------------HHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcc------------hHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 678888888888889999998888888877765432211 12245688999999999999999999999
Q ss_pred HHHHHHHhcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 363 YAKLVWELHH----------DHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 363 la~~~~~~g~----------d~~eA~~~~~~al~~~p~~~~~~~~la~ 400 (436)
+|.++..++. -|++|..+|++|+..+|++......|..
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999976653 1678899999999999998766555543
No 182
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=3.1e-06 Score=74.45 Aligned_cols=175 Identities=17% Similarity=0.114 Sum_probs=126.1
Q ss_pred HHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 184 MYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
.-+..++++.| +.+.++.-+|..+...|+++.|.+.|+..++++|.+.-++.+.|..++--|++.-|.+.+.+-.+.+|
T Consensus 86 ~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 86 NDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred hhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 33788899999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821 264 GDGESWMQYAKLVWELHRDQHRALTYFE-RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
++|.--..+-.. +..-|+.+|...+. ++...+.+ .| ..- .+-+-.|+..+
T Consensus 165 ~DPfR~LWLYl~--E~k~dP~~A~tnL~qR~~~~d~e---~W-G~~----------------------iV~~yLgkiS~- 215 (297)
T COG4785 165 NDPFRSLWLYLN--EQKLDPKQAKTNLKQRAEKSDKE---QW-GWN----------------------IVEFYLGKISE- 215 (297)
T ss_pred CChHHHHHHHHH--HhhCCHHHHHHHHHHHHHhccHh---hh-hHH----------------------HHHHHHhhccH-
Confidence 998543333222 22235777766553 33333322 11 111 11111222211
Q ss_pred HHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821 343 EEYFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 343 ~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p 389 (436)
...++++.....++ .++++.+|..+...|+ .++|...|+-++..+-
T Consensus 216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~-~~~A~~LfKLaiannV 268 (297)
T COG4785 216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD-LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhH
Confidence 12223333222222 4689999999999999 9999999999987653
No 183
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=3.4e-07 Score=89.68 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=65.6
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHhh-CCCC
Q 013821 352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV---LAAYACFLWETEEDEDDSKSSDQFQQV-APIR 425 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~l-~p~~ 425 (436)
.+|+++.+|+++|.+|+.+|+ |++|+..|+++++++|++..+ |+++|.+|..+|+.++|++.+++++++ ++.|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR-VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 368899999999999999999 999999999999999998854 999999999999999999999999997 4444
No 184
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.51 E-value=2e-05 Score=85.38 Aligned_cols=197 Identities=11% Similarity=0.133 Sum_probs=160.6
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|+.+=++....|.-+.-.+.|++|.+... -..+|..|..+|...+++++|.++|+..++...+...+|..+|..++.
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 4566666666666888888999999998753 347889999999999999999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 279 LHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
... -+.|...+++|++.-|. +.+.....+ .+.++.|+.+.+...|+..+..+|.-
T Consensus 1577 ~ne-~~aa~~lL~rAL~~lPk~eHv~~IskfA----------------------qLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1577 QNE-AEAARELLKRALKSLPKQEHVEFISKFA----------------------QLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred ccH-HHHHHHHHHHHHhhcchhhhHHHHHHHH----------------------HHHhhcCCchhhHHHHHHHHhhCccc
Confidence 864 78999999999999998 777777777 88889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHH-HHHHHHHCCChHHHHHHHHHHHh
Q 013821 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PADSHVLAA-YACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~--p~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~ 420 (436)
.++|.-+...-.+.|+ .+-+..+|++++.+. |......+. +-..-.+.|+-......-.+|.+
T Consensus 1634 tDlW~VYid~eik~~~-~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1634 TDLWSVYIDMEIKHGD-IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred hhHHHHHHHHHHccCC-HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 9999999999999999 899999999999875 443333333 33333344665555444444544
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.50 E-value=0.00011 Score=70.15 Aligned_cols=215 Identities=18% Similarity=0.074 Sum_probs=173.1
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHHH
Q 013821 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA---DPGD---GESWMQYAKLVWEL 279 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~---~~~~~~la~~~~~~ 279 (436)
.-..+.|+.+.|+.|-+++....|.-+.++...-......|+|+.|++..+..... .++. ..+-..-+......
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 34457899999999999999999999999988888899999999999999877653 3322 22333334444444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------hHHHHcCCHHHHHHHHHHH---
Q 013821 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------LPIQSKGDLEGAEEYFSRA--- 349 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~g~~~~A~~~~~~a--- 349 (436)
.-|...|...-.+++++.|+...+-..-+..+.+.|+..++-.+++..++. .+|....--+.++.-++++
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 557899999999999999999999999999999999999999999998887 4555444444455555554
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhC
Q 013821 350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLW-ETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~l~ 422 (436)
..+.|++.+....++..-..-|+ +..|...-+.+....|. ..++..|+.+-. +.|+..+....+.+++.-+
T Consensus 322 ~slk~nnaes~~~va~aAlda~e-~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGE-FSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccc-hHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 45579999999999999999999 99999999999999998 456677777754 4599999999999999865
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.48 E-value=4.1e-06 Score=76.83 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=96.1
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAK 274 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 274 (436)
.++.+.-++..|+|..|+..|..-++..|+.. .+++.||.+++.+|+|++|...|..+++..|+ -+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 67777788888999999999999999999764 89999999999999999999999999998776 4789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++..+++ .++|...|+++++..|+...+.....
T Consensus 224 ~~~~l~~-~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 224 SLGRLGN-TDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHhcC-HHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999986 99999999999999999887765443
No 187
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=2.9e-05 Score=70.49 Aligned_cols=159 Identities=19% Similarity=0.127 Sum_probs=74.9
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cC
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---HR 281 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~ 281 (436)
+.+++..|++++|+....+. .+.++...-..++.++.+.+-|...++++.+++.+. ++..||..+... +.
T Consensus 115 a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccch
Confidence 34555555555555554442 233444444455555555555555555555444332 111122221111 11
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
.+.+|.-+|+..-+..|-.+..+..++ .+...+|+|++|...++.+|..++++++++.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~A----------------------v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQA----------------------VCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHH----------------------HHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 244555555555554444444444444 4555555555555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 362 QYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
|+..+-...|.|.+--.+.+.+....+|.++
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 5555555555533333344444444455443
No 188
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.47 E-value=9.3e-07 Score=86.65 Aligned_cols=70 Identities=21% Similarity=0.140 Sum_probs=66.1
Q ss_pred hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcC
Q 013821 296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI---MSQYAKLVWELHH 372 (436)
Q Consensus 296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~ 372 (436)
.+|+++.+++++| .+|..+|+|++|+.+|+++|+++|++.++ |+++|.+|..+|+
T Consensus 70 ~dP~~a~a~~NLG----------------------~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr 127 (453)
T PLN03098 70 ADVKTAEDAVNLG----------------------LSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE 127 (453)
T ss_pred CCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC
Confidence 4688999999999 89999999999999999999999999865 9999999999999
Q ss_pred CHHHHHHHHHHHHHhC
Q 013821 373 DHDKALCYFERAVQAS 388 (436)
Q Consensus 373 d~~eA~~~~~~al~~~ 388 (436)
+++|+.++++|+++.
T Consensus 128 -~dEAla~LrrALels 142 (453)
T PLN03098 128 -GKKAADCLRTALRDY 142 (453)
T ss_pred -HHHHHHHHHHHHHhc
Confidence 999999999999983
No 189
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.47 E-value=3.9e-06 Score=67.89 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=87.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCC
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYACFLWETE 406 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g 406 (436)
..+...|+.+.|++.|.++|.+.|..+.+|++.+.++.-+|+ .++|+..+++++++..+.. .++...|.+|..+|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~-~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD-DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 777889999999999999999999999999999999999999 8999999999999976544 67788999999999
Q ss_pred ChHHHHHHHHHHHhhCCCChh
Q 013821 407 EDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 407 ~~~eA~~~~~~al~l~p~~~~ 427 (436)
+.+.|..-|+.+.++-..|..
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHH
Confidence 999999999999998766544
No 190
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=8.2e-05 Score=67.65 Aligned_cols=201 Identities=13% Similarity=0.085 Sum_probs=143.9
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHh-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDE-YP-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+...++.++..-++-+.-+.-+.+.+.. .- .+...+..-|.+|...|++++|+....+. .+.++...--.++.
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHH
Confidence 3333444444445545544444444433 22 23355666778889999999999887763 34445555556777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (436)
++.+ ++-|.+.+++..+++.+.. +..|+..+.. +....+.+..|.-+|+..-+..|-.+
T Consensus 149 k~~r-~d~A~~~lk~mq~ided~t--LtQLA~awv~------------------la~ggek~qdAfyifeE~s~k~~~T~ 207 (299)
T KOG3081|consen 149 KMHR-FDLAEKELKKMQQIDEDAT--LTQLAQAWVK------------------LATGGEKIQDAFYIFEELSEKTPPTP 207 (299)
T ss_pred HHHH-HHHHHHHHHHHHccchHHH--HHHHHHHHHH------------------HhccchhhhhHHHHHHHHhcccCCCh
Confidence 7776 9999999999988876543 3334433221 11234568999999999988777779
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH-HHHHHHhhCCCChh
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSK-SSDQFQQVAPIRQG 427 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~-~~~~al~l~p~~~~ 427 (436)
..+...+.|...+|+ |++|...++.+|..++.+++.+.++..+-..+|...++.. ...+.....|.+.-
T Consensus 208 ~llnG~Av~~l~~~~-~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGR-YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHccHHHHHHHhcC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999999999999 9999999999999999999999999999999999877665 44555556666543
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.46 E-value=7.1e-05 Score=68.15 Aligned_cols=178 Identities=16% Similarity=0.117 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---IL 304 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~---~~ 304 (436)
-+..|+.-|...++.|++++|+..|+.+....|.. ..+...++.++++.+ ++++|+...++-+.+.|.++. ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-EYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 35788999999999999999999999999988765 578889999999887 599999999999999998654 34
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHH
Q 013821 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-----------------EIMSQYAKLV 367 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~ 367 (436)
+..|..+...-+ .....+.-..+|+..|+..+...|+.. .-=..+|..|
T Consensus 112 YlkgLs~~~~i~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 112 YLKGLSYFFQID--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred HHHHHHHhccCC--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445533322211 223334445678888889999888752 1124567788
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhh-CCCC
Q 013821 368 WELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQFQQV-APIR 425 (436)
Q Consensus 368 ~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~l-~p~~ 425 (436)
.+.|. +-.|+..++.+++..|+.. +++..+..+|..+|-.++|.+. .+++.. .|+.
T Consensus 178 ~kr~~-~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s 237 (254)
T COG4105 178 LKRGA-YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPDS 237 (254)
T ss_pred HHhcC-hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCC
Confidence 89999 9999999999999877654 7888889999999999999776 445554 3544
No 192
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.46 E-value=2.6e-06 Score=73.14 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
+++|+.-|++||.++|+..++++++|.++..++.... ..-.....|++|..+|++|...+|.+...+..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~-----------d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP-----------DTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC-----------ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 5677778888888888888888888877776553211 11122345889999999999999998766655
Q ss_pred HHHH
Q 013821 363 YAKL 366 (436)
Q Consensus 363 la~~ 366 (436)
|..+
T Consensus 120 Le~~ 123 (186)
T PF06552_consen 120 LEMA 123 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 193
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.45 E-value=1.1e-05 Score=76.01 Aligned_cols=198 Identities=14% Similarity=0.057 Sum_probs=137.7
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHH----hCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMID----EYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESW 269 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 269 (436)
++.+..+..+.|.|++++.+---.++ .+... -.++.+++..+.+..++.+++.+-+-.+.+-... ..+.
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 33344466677777766655433333 22111 2567777777777777777777777666653222 3566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013821 270 MQYAKLVWELHRDQHRALTYFERAALAAPQDS------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
..++..+..+++ ++++++.|++|+++..++. .+...++ .++.+..|+++|.
T Consensus 126 l~~~~Ahlgls~-fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg----------------------slf~~l~D~~Kal 182 (518)
T KOG1941|consen 126 LSMGNAHLGLSV-FQKALESFEKALRYAHNNDDAMLELQVCVSLG----------------------SLFAQLKDYEKAL 182 (518)
T ss_pred hhHHHHhhhHHH-HHHHHHHHHHHHHHhhccCCceeeeehhhhHH----------------------HHHHHHHhhhHHh
Confidence 667777777776 8888888888877754432 3445566 7777888888888
Q ss_pred HHHHHHHHhCCC----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Q 013821 344 EYFSRAILANPG----------DGEIMSQYAKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWETEE 407 (436)
Q Consensus 344 ~~~~~al~~~p~----------~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~~g~ 407 (436)
-+..+|.++... ...+++.++..+..+|+ .-.|.++++++.++. +-.......+|.+|...|+
T Consensus 183 ~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd 261 (518)
T KOG1941|consen 183 FFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD 261 (518)
T ss_pred hhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc
Confidence 888888877321 13467788888999999 999999999987763 2233566788999999999
Q ss_pred hHHHHHHHHHHHhhC
Q 013821 408 DEDDSKSSDQFQQVA 422 (436)
Q Consensus 408 ~~eA~~~~~~al~l~ 422 (436)
.+.|..-|+++....
T Consensus 262 ~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 262 LERAFRRYEQAMGTM 276 (518)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999999988764
No 194
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.45 E-value=2.4e-05 Score=78.80 Aligned_cols=198 Identities=16% Similarity=0.140 Sum_probs=103.4
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC----HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---------- 264 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------- 264 (436)
..|..+|.+|...|+.+.|..+|+++++..=. -+.+|...|..-....+++.|+...++|...-..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 55666666666666666666666666654321 2355666666666666666666666666543111
Q ss_pred --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013821 265 --------DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 265 --------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
...+|..++++....|- ++.-...|++.+++.--.+....++|.++. ..
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gt-festk~vYdriidLriaTPqii~NyAmfLE----------------------eh 524 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGT-FESTKAVYDRIIDLRIATPQIIINYAMFLE----------------------EH 524 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------hh
Confidence 12345555555444443 566666666666666666666666664444 44
Q ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCChHH
Q 013821 337 GDLEGAEEYFSRAILAN--PGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASPADS--HVLAAYACFLWETEEDED 410 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~--~g~d~~eA~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~e 410 (436)
.-++++.+.|++.+.+. |.-.++|..+-..+.+ .|...+.|..+|++||+..|... .++..++.+-.+.|-...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44555555555555553 2333344332222211 12225555566666655554211 334444555555555555
Q ss_pred HHHHHHHHH
Q 013821 411 DSKSSDQFQ 419 (436)
Q Consensus 411 A~~~~~~al 419 (436)
|+..|+++-
T Consensus 605 amsiyerat 613 (835)
T KOG2047|consen 605 AMSIYERAT 613 (835)
T ss_pred HHHHHHHHH
Confidence 555555543
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.45 E-value=6.9e-06 Score=68.37 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=89.8
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 271 (436)
+..+...|.-.++.|+|.+|++.|+......|... .+.+.+|.+|++.+++++|+..+++.++++|.+ ..+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 45666777777888999999999999999988654 889999999999999999999999999999986 467888
Q ss_pred HHHHHHHHcC--------------CHHHHHHHHHHHHHhCCCCHHH
Q 013821 272 YAKLVWELHR--------------DQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 272 la~~~~~~~~--------------d~~~A~~~~~~al~~~p~~~~~ 303 (436)
.|.+++.+.. ...+|...|+++++..|+...+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8988877641 1578999999999999987654
No 196
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.43 E-value=7.8e-06 Score=77.65 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
+|..+..+..+.+..+.|..+|.+|++..+....+|...|.+-+..++|.+.|.+.|+.+++..|.+...|..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~----- 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYL----- 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHH-----
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-----
Confidence 344444445444445555555555553333344555555555444444444455555555555555555555555
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
..+...++.+.|...|++++..-|... .+|..+...-...|+ .+....+.+++.+..|+
T Consensus 78 -----------------~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd-l~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 78 -----------------DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD-LESVRKVEKRAEELFPE 139 (280)
T ss_dssp -----------------HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTT
T ss_pred -----------------HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhh
Confidence 333344455555555555554433322 344444444445554 55555555555555444
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.41 E-value=1e-05 Score=74.26 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ---DSNILAAYA 308 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la 308 (436)
.++.|.-++..|+|..|...|..-++..|+. +.++++||.+++.+++ |++|...|..+++..|+ -+++++.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~-y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD-YEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc-chHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 6777778888888888888888888888874 6788888888888764 88888888888887765 457777777
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
.+..++|+.++|...|+++++..|+...+..
T Consensus 223 ----------------------~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 ----------------------VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred ----------------------HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 6667777777777777777777777655543
No 198
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=6.7e-05 Score=66.90 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=118.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-C-CHHHHHHHHHHHHHHcCCHH
Q 013821 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA----DP-G-DGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p-~-~~~~~~~la~~~~~~~~d~~ 284 (436)
.+.+++|.++|.++-. .|...++|..|-..|-++-.. +. . -+..+...+.+|.+. +..
T Consensus 27 ~~k~eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~--~~~ 90 (288)
T KOG1586|consen 27 SNKYEEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV--DPE 90 (288)
T ss_pred CcchHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc--ChH
Confidence 3578999888887743 333344444444444444332 11 1 133445555565443 599
Q ss_pred HHHHHHHHHHHhCCCCHHH------HHHHHHHHHHccCchHHHHHHHHHHHHhHHH-HcCCHHHHHHHHHHHHHhCCCC-
Q 013821 285 RALTYFERAALAAPQDSNI------LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ-SKGDLEGAEEYFSRAILANPGD- 356 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~- 356 (436)
+|+.++++++++.-+.... +..+| .+|. ...++++|+.+|+++-+....+
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~ia----------------------EiyEsdl~d~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIA----------------------EIYESDLQDFEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHH----------------------HHHhhhHHHHHHHHHHHHHHHHHHcchh
Confidence 9999999998775442221 12333 4444 3488999999999987764432
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-------HVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 357 -----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
...+...+..-.++++ |.+|+..|++.....-++. ..++.-|.|++-..+.-.+...+++..+++|.
T Consensus 149 s~ssANKC~lKvA~yaa~leq-Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 149 SVSSANKCLLKVAQYAAQLEQ-YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 2345556666677888 9999999999877655543 34455677777778888888889999999999
Q ss_pred ChhHHh
Q 013821 425 RQGAVT 430 (436)
Q Consensus 425 ~~~~~~ 430 (436)
|.+...
T Consensus 228 F~dsRE 233 (288)
T KOG1586|consen 228 FTDSRE 233 (288)
T ss_pred ccccHH
Confidence 987654
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.36 E-value=1.3e-05 Score=76.09 Aligned_cols=137 Identities=21% Similarity=0.321 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH-cCCHHHHHHH
Q 013821 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS-KGDLEGAEEY 345 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~g~~~~A~~~ 345 (436)
.+|..+.....+.+| .+.|...|.+|++..+....+|...| .+... .++.+.|...
T Consensus 2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~~~~~~~vy~~~A----------------------~~E~~~~~d~~~A~~I 58 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG-IEAARKVFKRARKDKRCTYHVYVAYA----------------------LMEYYCNKDPKRARKI 58 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCS-THHHHHHH----------------------HHHHHTCS-HHHHHHH
T ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHcCCCCCHHHHHHHH----------------------HHHHHhCCCHHHHHHH
Confidence 468888888888887 99999999999966666788898888 66444 5777779999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
|+.+++..|.+...|..+...+...++ .+.|..+|++++..-|... .+|..+..+-.+.|+.+...++++++.++.
T Consensus 59 fe~glk~f~~~~~~~~~Y~~~l~~~~d-~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 59 FERGLKKFPSDPDFWLEYLDFLIKLND-INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998 9999999999998877654 689999999999999999999999999998
Q ss_pred CCChh
Q 013821 423 PIRQG 427 (436)
Q Consensus 423 p~~~~ 427 (436)
|....
T Consensus 138 ~~~~~ 142 (280)
T PF05843_consen 138 PEDNS 142 (280)
T ss_dssp TTS-H
T ss_pred hhhhH
Confidence 77433
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.34 E-value=2e-05 Score=65.66 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=88.3
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~ 404 (436)
....+.|+|.+|++.|+.+....|.. ..+.+.++.++++.++ +++|+..+++.++++|.++ .+++..|.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~-y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD-YEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 66778999999999999999998764 5789999999999999 9999999999999999876 788899999888
Q ss_pred CCC---------------hHHHHHHHHHHHhhCCCChhHHh
Q 013821 405 TEE---------------DEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 405 ~g~---------------~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
+.. ..+|...|++++...|+..-+..
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 876 88999999999999999876544
No 201
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.34 E-value=3.2e-05 Score=76.15 Aligned_cols=113 Identities=16% Similarity=0.072 Sum_probs=81.1
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C--
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---------------------D-- 265 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------------~-- 265 (436)
-+..+.+.-++.-++|++++|+.+++|..+|.- ...-..+|.++|+++++.... +
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 345777888999999999999999998888752 223356777777777664211 0
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHH
Q 013821 266 --GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 266 --~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
..+...+|.|.+++|+ .++|++.|+..++..|. +..++.++..++..++.+.++..++
T Consensus 257 ~~~y~KrRLAmCarklGr-~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGR-LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 3455678999999986 99999999999988775 5667888885555555555544444
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.28 E-value=9.7e-07 Score=66.48 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---C-C---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---P-A---DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---p-~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
|+-..++.++|.++..+|+ +++|+.+|++++++. + + ...++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3346789999999999999 999999999999762 2 2 2467899999999999999999999999886
No 203
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.27 E-value=1.2e-06 Score=65.92 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA---DP----GDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
..++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++...++ +++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 344555555555555555555555555543 11 113445555555555543 55555555555543
No 204
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.22 E-value=6.5e-05 Score=60.93 Aligned_cols=94 Identities=24% Similarity=0.179 Sum_probs=52.0
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAKLVW 277 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 277 (436)
-..|..+...|+.+.|++.|.+++.+-|..+.+|.+.++.+.-+|+.++|++.+++++++.... -.++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666666666666666666666654332 123444444444
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 013821 278 ELHRDQHRALTYFERAALA 296 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~ 296 (436)
..++ -+.|...|+.+.++
T Consensus 127 l~g~-dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGN-DDAARADFEAAAQL 144 (175)
T ss_pred HhCc-hHHHHHhHHHHHHh
Confidence 4432 45555555444443
No 205
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5.8e-06 Score=73.76 Aligned_cols=93 Identities=16% Similarity=0.025 Sum_probs=86.1
Q ss_pred HHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013821 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
-|+.++....|..|+..|.++|.++|..+..|.+.+.|+++..+++.+.....+++++.|+....++.+|.++....+ |
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~-~ 94 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG-Y 94 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-c
Confidence 355666668899999999999999999999999999999999999999999999999999999999999999999987 9
Q ss_pred HHHHHHHHHHHHhC
Q 013821 284 HRALTYFERAALAA 297 (436)
Q Consensus 284 ~~A~~~~~~al~~~ 297 (436)
++|+..++++..+.
T Consensus 95 ~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLL 108 (284)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999997664
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00032 Score=63.76 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHH
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMAD-PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ------DSNILAA 306 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~ 306 (436)
+.+.++.++.-.|+|.-.+..+.+.++.+ |.++.....+|.+-.+.| |.+.|..+|+++-+.... +..+..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G-D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG-DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34455566666666666667777766666 446666666666665554 466666666644432211 2233334
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~ 386 (436)
.+ .++.-++++..|...|.+.+..+|.++.+.++.|.|+..+|+ ...|++.++.+++
T Consensus 258 ~a----------------------~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 258 SA----------------------FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-LKDALKQLEAMVQ 314 (366)
T ss_pred hh----------------------hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 44 778888888888888888888888888888888888888888 8888888888888
Q ss_pred hCCCCH---HHHHHHHHH
Q 013821 387 ASPADS---HVLAAYACF 401 (436)
Q Consensus 387 ~~p~~~---~~~~~la~~ 401 (436)
..|... .++.++...
T Consensus 315 ~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 315 QDPRHYLHESVLFNLTTM 332 (366)
T ss_pred cCCccchhhhHHHHHHHH
Confidence 888743 334444443
No 207
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=8.1e-06 Score=72.83 Aligned_cols=91 Identities=18% Similarity=0.125 Sum_probs=86.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 410 (436)
..++...+|..|+.+|.+||.++|..+..|.+.+.+++++.+ ++.+...+.+++++.|+.+..++.+|.++.....+++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~-~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 566777899999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 013821 411 DSKSSDQFQQVA 422 (436)
Q Consensus 411 A~~~~~~al~l~ 422 (436)
|+..+.+++.+.
T Consensus 97 aI~~Lqra~sl~ 108 (284)
T KOG4642|consen 97 AIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999997763
No 208
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00012 Score=68.70 Aligned_cols=158 Identities=18% Similarity=0.042 Sum_probs=120.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHH
Q 013821 238 YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA-APQD---SNILAAYACFLWE 313 (436)
Q Consensus 238 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~ 313 (436)
-+.+....|++.+|...+++.++..|.+..++..--.+++..|+ ...-...+++.+-. +++- ..+.-.++
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~-~~~~k~ai~kIip~wn~dlp~~sYv~Gmya----- 182 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN-QIGKKNAIEKIIPKWNADLPCYSYVHGMYA----- 182 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc-hhhhhhHHHHhccccCCCCcHHHHHHHHHH-----
Confidence 34555667888888888999999999988888777777788775 77778888888776 5554 33333444
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---
Q 013821 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA--- 390 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~--- 390 (436)
..+...|-|++|++..++++++++.+..+...++.++...|+ +.++.+.+.+.-..-..
T Consensus 183 -----------------FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~Wr~s~m 244 (491)
T KOG2610|consen 183 -----------------FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDDWRQSWM 244 (491)
T ss_pred -----------------hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch-hhhHHHHHHhcccchhhhhH
Confidence 667788999999999999999999999999999999998898 99999888774322111
Q ss_pred -CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821 391 -DSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 391 -~~~~~~~la~~~~~~g~~~eA~~~~~~al 419 (436)
...-|...+.++++.+.++.|+++|.+-+
T Consensus 245 lasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 245 LASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 01345667788888899999999887643
No 209
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.14 E-value=0.00022 Score=70.39 Aligned_cols=179 Identities=11% Similarity=0.063 Sum_probs=116.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCchHH
Q 013821 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI---LAAYACFLWEMEDDGED 320 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A 320 (436)
+..+.++-++..++|++++|+.+.+|..||.-.. .-..+|+++|+++++.......- ....+........-+--
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA---~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEEA---STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc---cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 3456677788889999999999999998885322 23789999999998875331110 00111000000000000
Q ss_pred HHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHH
Q 013821 321 DKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG--DGEIMSQYAKLVWELHHDHDKALCYFERAVQA-SPADSHVLAA 397 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-~p~~~~~~~~ 397 (436)
.-.+.+.--..+..+.|+.++|++.++..++..|. +..++.+|..++..++. |.++...+.+.=.+ -|....+.+.
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhccccCCchHHHHHH
Confidence 00000110117888999999999999999998875 56799999999999999 99999999986433 2555555555
Q ss_pred HHHHHHH-CCC---------------hHHHHHHHHHHHhhCCCCh
Q 013821 398 YACFLWE-TEE---------------DEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 398 la~~~~~-~g~---------------~~eA~~~~~~al~l~p~~~ 426 (436)
-+.+..+ .++ ...|++.+++|.+.+|+-+
T Consensus 336 aALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 336 AALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 5544333 122 1346788999999988744
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=9.2e-05 Score=67.16 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=111.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHH
Q 013821 245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKA 323 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 323 (436)
....+..++.+++-+. .+.+.+..++...+. |.-.+..+.++++.+ |.++.....++
T Consensus 162 ~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kE-y~iS~d~~~~vi~~~~e~~p~L~s~Lg--------------- 219 (366)
T KOG2796|consen 162 GLAEESSIRLWRKRLG------RVMYSMANCLLGMKE-YVLSVDAYHSVIKYYPEQEPQLLSGLG--------------- 219 (366)
T ss_pred ccchhhHHHHHHHHHH------HHHHHHHHHHhcchh-hhhhHHHHHHHHHhCCcccHHHHHHHH---------------
Confidence 3334666666666543 466777777777764 888888888888887 55777777888
Q ss_pred HHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 324 QEEHIQVLPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 324 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~ 397 (436)
.+..+.||.+.|..+|+++-+.+. ...-+..+.+.++...++ +.+|...|.+.+..+|.++.+..+
T Consensus 220 -------r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn-~a~a~r~~~~i~~~D~~~~~a~Nn 291 (366)
T KOG2796|consen 220 -------RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN-FAEAHRFFTEILRMDPRNAVANNN 291 (366)
T ss_pred -------HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc-hHHHHHHHhhccccCCCchhhhch
Confidence 777777788888888875544422 234456666667777766 888888888888888888888888
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 398 YACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 398 la~~~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
.|.|+.-+|+..+|++..++++...|.+.
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 88888888888888888888888877543
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.07 E-value=9.4e-06 Score=53.76 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
.++..+|.+|...|++++|++.|+++++.+|+++.+|..+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34556666666666666666666666666666666666555
No 212
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.07 E-value=6.8e-06 Score=80.43 Aligned_cols=107 Identities=18% Similarity=0.067 Sum_probs=99.0
Q ss_pred hHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013821 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
..++..+..+.++.|+..|.++|+++|+++..+.+.+.++.+.+++..|+..+.+|++++|....+|+..|.++...++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~- 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE- 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH-
Confidence 3456677779999999999999999999999999999999999999999999999999999999999999999888886
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
+.+|...|++...+.|+++.+...+..+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 9999999999999999999998777644
No 213
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00033 Score=72.56 Aligned_cols=167 Identities=18% Similarity=0.161 Sum_probs=111.3
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
...+.+...+|..++|+.+|++.-.. -.+-.+|...|.+++|.+..+.--.+ .-...|+++|.-+...+
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~- 872 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARR- 872 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhc-
Confidence 34455666778888888888877443 34556677778888877765432111 12456777777665554
Q ss_pred CHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcC
Q 013821 282 DQHRALTYFERA----------ALAAP----------QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKG 337 (436)
Q Consensus 282 d~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g 337 (436)
|.+.|+++|+++ +.-+| .+...|..+|..+...|+.+.|+..|..+-.- .+..-+|
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQG 952 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeecc
Confidence 688888888764 22233 25566677787777777777777777644332 5555567
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013821 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al 385 (436)
+.++|....++ ..+-.+.+.||+.|...|+ +.+|+..|.+|-
T Consensus 953 k~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~-v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 953 KTDKAARIAEE-----SGDKAACYHLARMYENDGD-VVKAVKFFTRAQ 994 (1416)
T ss_pred CchHHHHHHHh-----cccHHHHHHHHHHhhhhHH-HHHHHHHHHHHH
Confidence 77777654433 4667788899999999888 999998888764
No 214
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.0014 Score=68.16 Aligned_cols=217 Identities=20% Similarity=0.224 Sum_probs=142.4
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRM----------IDEYPC----------HPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~P~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
..|++.+..+...++.+.|+++|+++ +..+|. +...|...|..+...|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 56777888888889999999999874 444553 4456777888899999999999999887
Q ss_pred HHh---------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 013821 259 TMA---------------------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA------PQDSNILAAYACFL 311 (436)
Q Consensus 259 l~~---------------------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 311 (436)
-.. ...+..+.+.+|..|...+ ++.+|+..|.+|-... ..+. ..-.|..+.
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g-~v~~Av~FfTrAqafsnAIRlcKEnd-~~d~L~nla 1016 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG-DVVKAVKFFTRAQAFSNAIRLCKEND-MKDRLANLA 1016 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 442 3456778999999988887 4999999998875432 2110 111222222
Q ss_pred HHccCch--HHHHHHHHHH---HH--hHHHHcCCHHHHHHHHHH-----HHH-----hCC-CCHHHHHHHHHHHHHhcCC
Q 013821 312 WEMEDDG--EDDKAQEEHI---QV--LPIQSKGDLEGAEEYFSR-----AIL-----ANP-GDGEIMSQYAKLVWELHHD 373 (436)
Q Consensus 312 ~~~g~~~--~A~~~~~~~~---~~--~~~~~~g~~~~A~~~~~~-----al~-----~~p-~~~~~~~~la~~~~~~g~d 373 (436)
...+..+ .|.+.|++.- .. .+|.+.|.+.+|++..-+ +|+ ++| .++..+..-+..+....+
T Consensus 1017 l~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q- 1095 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ- 1095 (1416)
T ss_pred hhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH-
Confidence 3333222 2333333221 00 566666777666654322 121 234 357777777777777777
Q ss_pred HHHHHHHHHH------HHHhC----------------CCC---------HHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821 374 HDKALCYFER------AVQAS----------------PAD---------SHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 374 ~~eA~~~~~~------al~~~----------------p~~---------~~~~~~la~~~~~~g~~~eA~~~~~~a 418 (436)
|++|..++-. |+++. |.. ..++-.+|.+..++|.|..|.+-|.+|
T Consensus 1096 yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9988876544 44431 211 267889999999999999998888765
No 215
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0011 Score=59.67 Aligned_cols=193 Identities=16% Similarity=0.114 Sum_probs=122.4
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH-H
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGDLYRAEDYYNHATMAD-----PGDG-E 267 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~ 267 (436)
.|..-+..+....++++|...+.++++-..++. .++-..|.+......+.++..+|++|..+. |+.+ .
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 333444455555999999999999997655442 445566677778899999999999998863 3333 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSN---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
++-.-|.++.. . ++++|++.|++++.+-..+.. +.-.++.+- +++.+...|.+|-.
T Consensus 113 aleKAak~len-v-~Pd~AlqlYqralavve~~dr~~ma~el~gk~s-------------------r~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 113 ALEKAAKALEN-V-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCS-------------------RVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHhhc-C-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh-------------------hHhhhhHHhhHHHH
Confidence 33444444333 3 489999999999876543222 222222111 77777788888777
Q ss_pred HHHHHHHh----C--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821 345 YFSRAILA----N--PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA----SPADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 345 ~~~~al~~----~--p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~ 414 (436)
.+.+-... . +.....+.....++....+ |..|..+++...++ .+++..++.+|-..| ..|+.++..++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D-yv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD-YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH-HHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 66664322 2 3333344444445555556 99999999887665 355666777776655 56777776554
Q ss_pred H
Q 013821 415 S 415 (436)
Q Consensus 415 ~ 415 (436)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
No 216
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00061 Score=66.87 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=72.1
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE---------YP---------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~P---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
..|.++|-+.++.|.|.-+..+|.++++. .| ..-+++++.|..|...|++-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 57899999999999999999999999961 12 2347899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHH
Q 013821 261 ADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~ 279 (436)
..-.+|..|..+|.++...
T Consensus 364 vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCcHHHHHHHHHHHHH
Confidence 9999999999999987654
No 217
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.00 E-value=0.00021 Score=71.46 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=84.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDG-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
..+..+|+...|+.++.+|+...|... ..+.+||.++.+-|- .-.|-..+.+++.+.-..+-.++.+|..+..+.+.+
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~-~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL-HLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh-hccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 344567899999999999999988654 357899999999998 899999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhhCCCChh
Q 013821 410 DDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 410 eA~~~~~~al~l~p~~~~ 427 (436)
.|++.|++++.++|+...
T Consensus 694 ~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPE 711 (886)
T ss_pred HHHHHHHHHHhcCCCChh
Confidence 999999999999988654
No 218
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=5.5e-05 Score=67.86 Aligned_cols=104 Identities=20% Similarity=0.222 Sum_probs=91.2
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMID--------EYPCH----------PLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~P~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
......|+-+++.|+|.+|...|+.|+. ..|.. ...+.++++|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 5667789999999999999999999875 23544 35688999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
.+|.+..+++..|.+....=+ .++|...|.++++++|.-..+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn-~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWN-EAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999888764 899999999999999975443
No 219
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.98 E-value=1.7e-05 Score=52.56 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~ 400 (436)
+.++..+|.++..+|+ +++|++.|+++++.+|+++.+|..++.
T Consensus 1 p~~~~~la~~~~~~G~-~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQ-PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578899999999999 999999999999999999999988875
No 220
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0027 Score=56.93 Aligned_cols=169 Identities=12% Similarity=-0.003 Sum_probs=111.5
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHH
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYP-----C-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE------SWMQY 272 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P-----~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l 272 (436)
|+.+-...++..|-..|.++.+.+- + -+..|...+.+|. .++.++|+..+++++++..+... .+..+
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~i 119 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEI 119 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhH
Confidence 3344444666666666666655321 1 2345555555554 45999999999999998665433 34578
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821 273 AKLVWELHRDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
|.+|...-.|+++|+.+|+++-+....+ .....+...+-.. ..-...++|.+|+..|+++..
T Consensus 120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA-----------------~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA-----------------QYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 8888766457999999999998876543 2222222211111 555577899999999999887
Q ss_pred hCCCCHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 352 ANPGDGE-------IMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 352 ~~p~~~~-------~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
..-++.- .++.-|.|+....+ .-.+...+++..+++|...
T Consensus 183 ~s~~n~LLKys~KdyflkAgLChl~~~D-~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 183 SSLDNNLLKYSAKDYFLKAGLCHLCKAD-EVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HhccchHHHhHHHHHHHHHHHHhHhccc-HHHHHHHHHHHHhcCCccc
Confidence 7655542 23444555565556 7788888899899999865
No 221
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.92 E-value=0.0079 Score=60.95 Aligned_cols=231 Identities=14% Similarity=0.083 Sum_probs=141.6
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPGD---GESWMQY 272 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 272 (436)
..+.|...+..-.+.|..+.+.+.|++++.--|-..+.|..+-..+. ..|+.+.-...|++|......+ ...|-.+
T Consensus 78 ~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdky 157 (577)
T KOG1258|consen 78 CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKY 157 (577)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHH
Confidence 34666777777777777777777777777777766666665554443 4566666666777776665443 3344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------------HHHHHHHH-----------------
Q 013821 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILA----------------------AYACFLWE----------------- 313 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~----------------------~la~~~~~----------------- 313 (436)
-.....++ ++..-...|++.++.--.....++ .+..-...
T Consensus 158 ie~en~qk-s~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~ 236 (577)
T KOG1258|consen 158 IEFENGQK-SWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIG 236 (577)
T ss_pred HHHHhccc-cHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHH
Confidence 44433333 366667777776654221111111 00000000
Q ss_pred ---c----cCchHHHHHHHHHHHH--------------------------------------------hHHHHcCCHHHH
Q 013821 314 ---M----EDDGEDDKAQEEHIQV--------------------------------------------LPIQSKGDLEGA 342 (436)
Q Consensus 314 ---~----g~~~~A~~~~~~~~~~--------------------------------------------~~~~~~g~~~~A 342 (436)
. +..+++...+.+.+.. ......|+++..
T Consensus 237 v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~ 316 (577)
T KOG1258|consen 237 VKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRV 316 (577)
T ss_pred HhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHH
Confidence 0 0001111111100000 444567888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
.-.|++++--.....+.|...+......|+ .+-|...+.++.++. |..+.++...+.+--..|++..|...+++...-
T Consensus 317 ~~l~ercli~cA~Y~efWiky~~~m~~~~~-~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 317 FILFERCLIPCALYDEFWIKYARWMESSGD-VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHHHHHhHHhhhHHHHHHHHHHHHHcCc-hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 888888887777778889988888888888 888888888887764 666777788888888888999999999988877
Q ss_pred CCCChhHH
Q 013821 422 APIRQGAV 429 (436)
Q Consensus 422 ~p~~~~~~ 429 (436)
.|.+-...
T Consensus 396 ~pg~v~~~ 403 (577)
T KOG1258|consen 396 YPGLVEVV 403 (577)
T ss_pred CCchhhhH
Confidence 67655443
No 222
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.89 E-value=1.5e-05 Score=49.56 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013821 220 YYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAE 252 (436)
Q Consensus 220 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 252 (436)
+|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367788888888888888888888888888775
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.88 E-value=0.012 Score=56.53 Aligned_cols=184 Identities=20% Similarity=0.039 Sum_probs=101.8
Q ss_pred hHHhhhhhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHH
Q 013821 203 VVDLIMPNFDDSAEAEEYYKRMIDEYP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE-SWMQYAKLVWEL 279 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~ 279 (436)
.-|.+..-.|+-..|.++-.++-.+-. ..+.++..-++.-.-.|+++.|..-|+-.+. +|+... .+..|-.- .+.
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle-Aqr 166 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE-AQR 166 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH-HHh
Confidence 345555556777777777666654322 2234555556666677777777777765542 232111 11111111 112
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------------hHHHHcCCHH
Q 013821 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------------LPIQSKGDLE 340 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~ 340 (436)
.|+.+-|+.+-+++....|.-+=++...-...+..|+++.|+++++..... -.-.-.-+..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 235677777777777777776666666666667777777777777644333 0111123445
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p 389 (436)
.|...-.+++++.|+...+-..-+..++..|+ ..++-.+++.+.+..|
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~-~rKg~~ilE~aWK~eP 294 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGN-LRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccc-hhhhhhHHHHHHhcCC
Confidence 55555555666666655555555555555555 5555555555555554
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.88 E-value=0.0018 Score=63.05 Aligned_cols=181 Identities=13% Similarity=0.060 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHH-HHhCCCCHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQYAKLVWE---LHRDQHRALTYFERA-ALAAPQDSNI 303 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~d~~~A~~~~~~a-l~~~p~~~~~ 303 (436)
+++..++-..|....+|+.-++..+..-.+ -++.+.+...+|.++.+ .| |.++|+..+..+ ....+.+++.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~g-dre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPG-DREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCC-CHHHHHHHHHHHHhccCCCChHH
Confidence 466677777888889999888888877666 45667777888877776 44 689999999884 4555678888
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821 304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~ 383 (436)
+-.+|.+|.+.-.. ..+......++|+.+|.++.+++|+ ...-.|++.++...|.++....+.-+-
T Consensus 220 ~gL~GRIyKD~~~~-------------s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 220 LGLLGRIYKDLFLE-------------SNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred HHHHHHHHHHHHHH-------------cCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHH
Confidence 88888777653100 0011234589999999999999965 455567777777777643333222222
Q ss_pred HHHh-----------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 384 AVQA-----------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 384 al~~-----------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
.+.+ .-.+-+.+..++.+..-.|++++|++.+++++.+.|....
T Consensus 286 ~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 286 GVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 2111 1234466778888899999999999999999998755433
No 225
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.84 E-value=1.9e-05 Score=49.05 Aligned_cols=31 Identities=13% Similarity=0.370 Sum_probs=15.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q 013821 381 FERAVQASPADSHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 381 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 411 (436)
|+++|+++|+++.+|.++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 4444555555555555555555555555444
No 226
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0002 Score=64.34 Aligned_cols=98 Identities=12% Similarity=0.175 Sum_probs=82.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILA--------NPGD----------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
.-+++.|+|.+|...|+.|+.. .|.+ ...+.|++.|+...|+ |-++++.+...|..+|.+.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e-~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE-YYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH-HHHHHHHHHHHHhcCCchH
Confidence 6667778888888888877654 3433 3468899999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013821 393 HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 429 (436)
.+++..|.+....-+.++|..-|.++++++|......
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999999999999999998765443
No 227
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.81 E-value=3.5e-05 Score=75.54 Aligned_cols=97 Identities=20% Similarity=0.135 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+|+.|+..|.+||+++|+.+..+.+.+ .++.+.+++..|+..+.+|++++|....+|+
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa----------------------~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~ 76 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRA----------------------LAHLKVESFGGALHDALKAIELDPTYIKAYV 76 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhh----------------------hhheeechhhhHHHHHHhhhhcCchhhheee
Confidence 366777777777777776666666666 5666667777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
..|.+...+++ +.+|...|++...+.|+++.+...+..+
T Consensus 77 rrg~a~m~l~~-~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 77 RRGTAVMALGE-FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred eccHHHHhHHH-HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 77777777777 7777777777777777776666655555
No 228
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0092 Score=54.45 Aligned_cols=215 Identities=17% Similarity=0.217 Sum_probs=157.0
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH- 284 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~- 284 (436)
++.+...-..|+.+-..+|.++|.+-.+|...-.++.. ..+..+-++++...++.+|++-.+|...-.+....+ ++.
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~ 130 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSF 130 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-Cccc
Confidence 44445667899999999999999999888888877765 456788999999999999999999999887877766 677
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcC-----CHHHHHHHH
Q 013821 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKG-----DLEGAEEYF 346 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g-----~~~~A~~~~ 346 (436)
+-++..+.++..+..+..+|...-.+....+.++.-+....+.++. .+-...| ..+.-+.+.
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 8899999999999999999999888888888898888888877776 0000011 234556788
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH-hc--CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH------HCCChH---HHHH
Q 013821 347 SRAILANPGDGEIMSQYAKLVWE-LH--HDHDKALCYFERAV-QASPADSHVLAAYACFLW------ETEEDE---DDSK 413 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~-~g--~d~~eA~~~~~~al-~~~p~~~~~~~~la~~~~------~~g~~~---eA~~ 413 (436)
.+.|.+.|++..+|..|.-++.. .| . +..-.......+ +..-..+..+.-+..+|. +.+..+ +|.+
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~s-~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ 289 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLELDSGLSS-DSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVK 289 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHhccCCcC-CchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 88999999999999999988875 33 1 233444444443 333445666655655552 223333 4666
Q ss_pred HHHHHH-hhCC
Q 013821 414 SSDQFQ-QVAP 423 (436)
Q Consensus 414 ~~~~al-~l~p 423 (436)
.|+... +.+|
T Consensus 290 ly~~La~~~Dp 300 (318)
T KOG0530|consen 290 LYEDLAIKVDP 300 (318)
T ss_pred HHHHHhhccCc
Confidence 666544 4554
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.80 E-value=0.0043 Score=60.51 Aligned_cols=181 Identities=14% Similarity=0.059 Sum_probs=123.6
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE----YPCHPLLLRNYAQLLQK---KGDLYRAEDYYNHAT-MADPGDGESW 269 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~ 269 (436)
++...++=..|....+|+.-+++.+..-.. -++...+.+.+|.++.+ .|+.++|+..+..++ ...+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 345556666777789999999999887776 45667888899999998 999999999999954 5566789999
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--hHHHHcCCH
Q 013821 270 MQYAKLVWELH--------RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--LPIQSKGDL 339 (436)
Q Consensus 270 ~~la~~~~~~~--------~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~g~~ 339 (436)
..+|.+|-..- ...++|+..|.++.+++|+ ...-.|++.++...|...+....+.+.... ..+.+.|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~- 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS- 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc-
Confidence 99999875431 1268999999999999964 344456665555555432222111111000 11111111
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
.-.-.+-+.+..++.+..-.|+ +++|+.++++++.+.|...
T Consensus 299 -----------~~~~~dYWd~ATl~Ea~vL~~d-~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 -----------LEKMQDYWDVATLLEASVLAGD-YEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred -----------ccccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCcch
Confidence 1122344556667777777888 9999999999999987744
No 230
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.78 E-value=0.0058 Score=63.77 Aligned_cols=242 Identities=17% Similarity=0.089 Sum_probs=166.7
Q ss_pred CCCChHHHHHhhcC----CCCCCchhhhhhHHhhhhhCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q 013821 178 RPVSPPMYLAMGLG----ISVPGFDDAGEVVDLIMPNFD-----DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-- 246 (436)
Q Consensus 178 ~p~~a~~~~~~~~~----~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-- 246 (436)
++..+..|+.++.. -...+.+.+...+|.+|.+.. ++..|+.+|.++.+.. ++.+.+.+|.++....
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~ 341 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKE 341 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCcc
Confidence 56677777777754 111134457788888888743 7788999999998874 5677889999988755
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCchHHH
Q 013821 247 -DLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---HRDQHRALTYFERAALAAPQDSNILAAYACFLWEM-EDDGEDD 321 (436)
Q Consensus 247 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~ 321 (436)
++..|.++|..|... .+..+.+.++.||..- .++...|..+|+++.+.. ++.+...++.++.-. +.++.+.
T Consensus 342 ~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~ 417 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTAL 417 (552)
T ss_pred ccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHH
Confidence 678999999988754 5678888889776542 246899999999999998 444444444333322 5555544
Q ss_pred HHHHHHHHH---------hHHHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHHHHH
Q 013821 322 KAQEEHIQV---------LPIQS-----------KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL---HHDHDKAL 378 (436)
Q Consensus 322 ~~~~~~~~~---------~~~~~-----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~d~~eA~ 378 (436)
..+...... ..+.. ..+...+...+.++. ...+..+...+|.+|+.- ++|+..|.
T Consensus 418 ~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~a~~~lgd~y~~g~g~~~d~~~a~ 495 (552)
T KOG1550|consen 418 ALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA--AQGNADAILKLGDYYYYGLGTGRDPEKAA 495 (552)
T ss_pred HHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHH--hccCHHHHhhhcceeeecCCCCCChHHHH
Confidence 444322211 11111 124455666666654 345678888899888765 56799999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHC-C--ChHHHHHHHHHHHhhCCCChhHHh
Q 013821 379 CYFERAVQASPADSHVLAAYACFLWET-E--EDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~-g--~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
..|.++.... ....+++|.++..- | ....|..+|.++.+.......+..
T Consensus 496 ~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~~~~~ 547 (552)
T KOG1550|consen 496 AQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAYLPVK 547 (552)
T ss_pred HHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhhhHHH
Confidence 9999998877 78899999887652 1 267899999999887766555444
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0017 Score=60.39 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=42.7
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 206 LIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34445588888888888888888888888888888888888888888776654
No 232
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.76 E-value=0.013 Score=55.82 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=139.8
Q ss_pred hhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---c
Q 013821 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---H 280 (436)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~ 280 (436)
....+++..|...+.++.... +......++.+|.. ..+..+|..+|+ ......++.+.+.||.+|..- .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcc
Confidence 345588999999999988733 34777888888875 556889999999 445667788999999888762 3
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 281 RDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+|+.+|..+|+++.+..-.. ..+...++.++..-. .+ .....+...|..+|.++-... ++.+
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~--------------~~~~~~~~~A~~~~~~aa~~~--~~~a 189 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA--------------LAVAYDDKKALYLYRKAAELG--NPDA 189 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh--------------hcccHHHHhHHHHHHHHHHhc--CHHH
Confidence 37999999999999886554 345677775443321 00 001113358999999988776 6889
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---------------ChHHHHHHHHHHHhh
Q 013821 360 MSQYAKLVWEL---HHDHDKALCYFERAVQASPADSHVLAAYACFLWETE---------------EDEDDSKSSDQFQQV 421 (436)
Q Consensus 360 ~~~la~~~~~~---g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~eA~~~~~~al~l 421 (436)
...+|.+|..- ..|+.+|..+|.++-+... ...++.++ ++...| +...|...+.++...
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 99999887542 2359999999999998877 78888888 777666 677778887777665
Q ss_pred C
Q 013821 422 A 422 (436)
Q Consensus 422 ~ 422 (436)
.
T Consensus 267 ~ 267 (292)
T COG0790 267 G 267 (292)
T ss_pred C
Confidence 4
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.75 E-value=0.004 Score=63.56 Aligned_cols=164 Identities=16% Similarity=0.052 Sum_probs=120.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGD-GES------WMQYAKLVWE---LHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~~---~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
..+-.+.--.||-+.++..+.++.+...-. +.+ |+.....+.. .+.+.+.|.+.++...+..|+..-.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 344444445788899999998887732212 111 1111111111 134578999999999999999999999
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821 306 AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 306 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~eA~~~~ 381 (436)
..| +++...|+.++|++.|++++..... ..-.++.+++++..+++ |++|..+|
T Consensus 272 ~~g----------------------R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-w~~A~~~f 328 (468)
T PF10300_consen 272 FEG----------------------RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-WEEAAEYF 328 (468)
T ss_pred HHH----------------------HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-HHHHHHHH
Confidence 999 8888899999999999998854332 23467889999999999 99999999
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHCCCh-------HHHHHHHHHHHhhC
Q 013821 382 ERAVQASPADS-HVLAAYACFLWETEED-------EDDSKSSDQFQQVA 422 (436)
Q Consensus 382 ~~al~~~p~~~-~~~~~la~~~~~~g~~-------~eA~~~~~~al~l~ 422 (436)
.+.++.+.-.. ...+..|.++...|+. ++|.++++++-.+.
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 99998766533 4456678889999999 88888888877654
No 234
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.71 E-value=0.0036 Score=60.63 Aligned_cols=162 Identities=10% Similarity=0.096 Sum_probs=111.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGD------------LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.-|++.++.+|.+..+|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+.. +.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHH
Confidence 45888999999999999999887765432 466788999999999999999998888887776 58889
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH-cc--CchHHHHHHHHHHHHhHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHH
Q 013821 287 LTYFERAALAAPQDSNILAAYACFLWE-ME--DDGEDDKAQEEHIQVLPIQSKGD--LEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
.+-+++++..+|++...|..+-..... .. .+......|.+++....-...+. .......++ ..-..++.
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e------~~~l~v~~ 158 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELE------EFMLYVFL 158 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHH------HHHHHHHH
Confidence 999999999999999999887755433 11 23333444433333211111110 000000000 01134667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821 362 QYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 362 ~la~~~~~~g~d~~eA~~~~~~al~~~ 388 (436)
.+...+.+.|- .+.|+..++..++.+
T Consensus 159 r~~~fl~~aG~-~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 159 RLCRFLRQAGY-TERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHCCc-hHHHHHHHHHHHHHH
Confidence 77778888999 999999999999875
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00084 Score=63.08 Aligned_cols=143 Identities=17% Similarity=0.053 Sum_probs=118.2
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCC
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGD---GESWMQYAKLVWELHRD 282 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~d 282 (436)
++...|++.+|-..+++.++..|.+..++..--.+++.+|+.+.-...+++.+-. +++. ..+.-.++..+.+.|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~- 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI- 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc-
Confidence 3444599999999999999999999988888888999999999999999999877 6665 5566667777888875
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------------hHHHHcCCHHHHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----------------LPIQSKGDLEGAEEYF 346 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~g~~~~A~~~~ 346 (436)
|++|.+.-++++++++.+.=+...++.++...++..++.+.+.+.-.. .++...+.|+.|++.|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999999999999999999999999999999888888877622111 5666778899999888
Q ss_pred HHHH
Q 013821 347 SRAI 350 (436)
Q Consensus 347 ~~al 350 (436)
.+-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8755
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0035 Score=56.55 Aligned_cols=171 Identities=15% Similarity=0.150 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..|..-+.+|...++|++|...+.+|.+...++. .++-..+.+...+.. +.++..+|+++..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k-lsEvvdl~eKAs~----------- 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK-LSEVVDLYEKASE----------- 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH-----------
Confidence 4566667788889999999999999987655442 233344444444543 7777777777754
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~ 380 (436)
.|...|..+.|...++++-+ .....+.++|+..|++++.+-..+ .+.+...++++....+ +.+|-..
T Consensus 100 ---lY~E~GspdtAAmaleKAak---~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k-f~Eaa~a 172 (308)
T KOG1585|consen 100 ---LYVECGSPDTAAMALEKAAK---ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK-FTEAATA 172 (308)
T ss_pred ---HHHHhCCcchHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH-hhHHHHH
Confidence 45555555555555544332 335678999999999998874432 3456677888888888 9999888
Q ss_pred HHHHHH----h--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 381 FERAVQ----A--SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 381 ~~~al~----~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
+.+-.. . .++....+.....++....++..|...|+..-+++
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 877432 2 24434555555666777779999999998877664
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.007 Score=56.34 Aligned_cols=163 Identities=14% Similarity=0.059 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-SNILAAYACF 310 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-~~~~~~la~~ 310 (436)
.+.-+..+.-....|++.+|...|..++...|++..+...++.+|...+. .+.|...+...-....+. ...+....
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~-~e~A~~iL~~lP~~~~~~~~~~l~a~i-- 210 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD-VEAAQAILAALPLQAQDKAAHGLQAQI-- 210 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC-hHHHHHHHHhCcccchhhHHHHHHHHH--
Confidence 34456667777889999999999999999999999999999999999975 888777665432211111 11111111
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
.++.+.....+. ..+++.+..+|++.++.+.+|..+...|+ +++|.+.+-..+..+-.
T Consensus 211 --------------------~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~-~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 211 --------------------ELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR-NEAALEHLLALLRRDRG 268 (304)
T ss_pred --------------------HHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccc
Confidence 222222222222 34566778899999999999999999999 99999999999987654
Q ss_pred --CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821 391 --DSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 391 --~~~~~~~la~~~~~~g~~~eA~~~~~~al 419 (436)
+..+...+-.++.-.|.-+.+...|++-+
T Consensus 269 ~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 269 FEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred ccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 56788888888888887777666666544
No 238
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.65 E-value=0.0001 Score=45.60 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555566666666666666666666555554
No 239
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.63 E-value=0.017 Score=57.87 Aligned_cols=206 Identities=14% Similarity=0.130 Sum_probs=152.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcC
Q 013821 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD--------------LYRAEDYYNHATMAD-PGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 281 (436)
-.-.|++++..-+..+++|+..+..+...++ -+++...|++++... ..+...++.++..-....+
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 3345678888778888888888777776666 678888888888653 3344444544433211110
Q ss_pred --CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHcCCHHHHHHH
Q 013821 282 --DQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSKGDLEGAEEY 345 (436)
Q Consensus 282 --d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~g~~~~A~~~ 345 (436)
.++.--.++++++.+...+ ..++.++-.+..+..-...|+.++.++-+. .-|...++..-|...
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrI 423 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRI 423 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHH
Confidence 1566667777877765443 345666777777777777777777755544 557788999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA--SPA-DSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
|+-.|+..++.+.........+..+++ -..|..+|++++.. .|+ ...+|..+-..-...|+....+++-++-....
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNd-d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLND-DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCc-chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999 68999999999987 443 34789999999999999999888877776665
Q ss_pred C
Q 013821 423 P 423 (436)
Q Consensus 423 p 423 (436)
|
T Consensus 503 ~ 503 (656)
T KOG1914|consen 503 P 503 (656)
T ss_pred c
Confidence 5
No 240
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.62 E-value=0.0019 Score=67.83 Aligned_cols=130 Identities=14% Similarity=0.045 Sum_probs=107.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
...+++.+|+....+.++..|+...+...-|..+.++|+ .++|..+++..-...+++...+..+.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le~~~~~~~~D~~tLq~l~-------------- 84 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLEALYGLKGTDDLTLQFLQ-------------- 84 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHhhhccCCCCchHHHHHHH--------------
Confidence 356788999999999999999999999999999999987 99999888887777888877777777
Q ss_pred HHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 323 AQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 323 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~ 397 (436)
.+|..++++++|..+|++++..+|. .+.++.+=.+|.+.+. |.+-.+.--+..+..|.++...+.
T Consensus 85 --------~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~-yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 85 --------NVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKS-YKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred --------HHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCcccchHHH
Confidence 8899999999999999999999999 7777777778877777 766555555555677777644433
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.62 E-value=0.00017 Score=44.49 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
.+|+.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 242
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00048 Score=64.61 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=85.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
.-|++.++|..|+.+|.+.|+..-. ++..|.|.|.+...+|+ |..|+..+.+++.++|.+..+++.=+.|++.+.
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N-yRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN-YRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 7788999999999999999998543 35578899999999999 999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCChhH
Q 013821 407 EDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 407 ~~~eA~~~~~~al~l~p~~~~~ 428 (436)
++++|+.+.+..+.++-.-..+
T Consensus 168 ~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred HHHHHHHHHhhhhhhhHHHHHH
Confidence 9999999998887776443333
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.57 E-value=0.00015 Score=44.84 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
.+|+++|.++..+|+ +++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD-YEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCC-chHHHHHHHHHHHHCcC
Confidence 456666666666666 66666666666666665
No 244
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.55 E-value=0.043 Score=52.04 Aligned_cols=210 Identities=12% Similarity=0.049 Sum_probs=115.4
Q ss_pred hhCCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCCC----------
Q 013821 209 PNFDDSAEAEEYYKRMIDEY----PCH----PLLLRNYAQLLQKKG-DLYRAEDYYNHATMA----DPGD---------- 265 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~----P~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~~---------- 265 (436)
.+.|+++.|..++.|+-... |+. ...+++.|......+ +++.|..+++++.++ .+..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34577777777777776543 222 245666777777777 777777777777766 2111
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------
Q 013821 266 GESWMQYAKLVWELHR--DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------- 330 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~--d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------- 330 (436)
..++..++.++...+. ..++|....+.+-.-.|+.+..+...-.++.+.++.+.+.+.+.+++..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 2355666666655442 1344555555555556776666655555555566666666666666554
Q ss_pred -hHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH---HHHHhc-CCHHHH--HHHHHHHHH----h--CCCCH---
Q 013821 331 -LPIQSKGDLEGAEEYFSRAILA--NPGDGEIMSQYAK---LVWELH-HDHDKA--LCYFERAVQ----A--SPADS--- 392 (436)
Q Consensus 331 -~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~---~~~~~g-~d~~eA--~~~~~~al~----~--~p~~~--- 392 (436)
.-.........|..++...+.. .|.... |..... ++...+ .+.... ++..+..+. . .|-..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 1011223345566666665543 232221 322222 222211 111122 333322222 1 12222
Q ss_pred ----HHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821 393 ----HVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 393 ----~~~~~la~~~~~~g~~~eA~~~~~~al 419 (436)
..+++.|...++.++|++|+.+|+-++
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 345677888999999999999999776
No 245
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.54 E-value=0.00024 Score=43.79 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~ 391 (436)
.+|+.+|.+++.+|+ +++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~-~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN-YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCcCC
Confidence 456666666666666 666666666666666653
No 246
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.00087 Score=65.85 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=109.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHH
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA-ALAAPQ--------DSNILA 305 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a-l~~~p~--------~~~~~~ 305 (436)
.......|.++.+...+..-.+.++.+..+.+.++...+..++..|+ +.+|.+.+... +...|. .-..|.
T Consensus 209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn-~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN-HPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc-hHHHHHHHHhcccccccCccccchhhhheeec
Confidence 34444555666666677766677776667777777777877777764 88887766543 233333 223456
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHH
Q 013821 306 AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA---------N---------PGDGEIMSQYAKLV 367 (436)
Q Consensus 306 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~~~~la~~~ 367 (436)
++| .++++.|.|.-+..+|.+|++. . -..-+++++.|..|
T Consensus 288 NlG----------------------cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~ 345 (696)
T KOG2471|consen 288 NLG----------------------CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLY 345 (696)
T ss_pred Ccc----------------------eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHH
Confidence 777 7888889999999999999862 1 13468999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 368 ~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
...|+ .-.|.++|.+++.....++..|..++.+.+.
T Consensus 346 Lh~gr-Pl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 346 LHSGR-PLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhcCC-cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999988654
No 247
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00071 Score=63.50 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=90.7
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
+..+..-|+-+++..+|..|+..|.+.|+..-.+ +..|.+.|-+.+..|+|..|+....+++.++|.+..+++.=|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3566778999999999999999999999975433 467899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 274 KLVWELHRDQHRALTYFERAALAAPQDS 301 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~p~~~ 301 (436)
.|++.+.+ +++|..+++..+.++....
T Consensus 161 kc~~eLe~-~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 161 KCLLELER-FAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHHH-HHHHHHHHhhhhhhhHHHH
Confidence 99999987 9999999999887765543
No 248
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0061 Score=55.57 Aligned_cols=176 Identities=13% Similarity=0.181 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
.+|.++..+|+..+..+...+ .|+.....++.++|.+-.+|...-.++..++.|..+-++++.
T Consensus 40 e~fr~~m~YfRAI~~~~E~S~-----------------RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKSP-----------------RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhccccCH-----------------HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 678888888888777665444 567777889999999999999999999999888999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCch-HHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 292 RAALAAPQDSNILAAYACFLWEMEDDG-EDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
+.++-+|.+.++|...-.+....|+.. +-+.....++.. ++...-+.|+.-+.+..+.|+.+-.+-.
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 999999999999998886666666554 334444433332 5555556666666666666666555555
Q ss_pred HHHHHHHHHHH-hcC-C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 359 IMSQYAKLVWE-LHH-D---HDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 359 ~~~~la~~~~~-~g~-d---~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
+|+..-.+... .|- + .+.-+.+..+.+.+.|++..+|..|.-++..
T Consensus 183 AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 183 AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 55544333322 111 0 2233445555666666666666666666654
No 249
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.0053 Score=52.05 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+...++..+...+ ++++|+..+++++..+|.+..++..+.
T Consensus 64 ~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm 103 (146)
T PF03704_consen 64 ALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLM 103 (146)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4455666666665 488888888888888888888888888
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.40 E-value=0.039 Score=56.04 Aligned_cols=184 Identities=14% Similarity=0.083 Sum_probs=124.7
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD-PGDGESWMQYAKLVW 277 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 277 (436)
..|...-......|+++...-.|++++-.-......|..++......|+.+-|...+.++.+.. |..+.+....+.+ .
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f-~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF-E 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH-H
Confidence 5566666677888999999999999998877888999999999999999999999999999875 5566666666655 4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH---HHHHHHHh--
Q 013821 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE---YFSRAILA-- 352 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~---~~~~al~~-- 352 (436)
+..++++.|...+++...-.|+...+-...+.+..+.| ..+.+.. ++.....-
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~----------------------~~~~~~~~~~l~s~~~~~~~ 434 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG----------------------NLEDANYKNELYSSIYEGKE 434 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc----------------------chhhhhHHHHHHHHhccccc
Confidence 44456999999999999888998888888884444444 4444442 11111110
Q ss_pred CC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821 353 NP-GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 353 ~p-~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
++ -....+...++..+...+|.+.|...+.++++..|.+...+..+..+....
T Consensus 435 ~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 435 NNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 01 112334444444444444455666666666666666555555554444333
No 251
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.39 E-value=0.047 Score=52.02 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH----cCC
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGD-GESWMQYAKLVWEL----HRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~----~~d 282 (436)
.+..+|..+|+.+.+ ..++.+.+.+|.+|.. ..++.+|..+|+++.+..-.. ..+.+.++.++..- +-.
T Consensus 91 ~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 91 RDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred ccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 458899999995544 4577889999999987 559999999999999886554 45577888776652 122
Q ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 283 --QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 283 --~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
...|+..|.++.... +..+.+.+|.+|..- .-...++.+|..+|.++-+... ...+
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G------------------~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG------------------LGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC------------------CCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 347999999988776 778888888433221 0124589999999999998877 8888
Q ss_pred HHHHHHHHHhcC--------------CHHHHHHHHHHHHHhCCC
Q 013821 361 SQYAKLVWELHH--------------DHDKALCYFERAVQASPA 390 (436)
Q Consensus 361 ~~la~~~~~~g~--------------d~~eA~~~~~~al~~~p~ 390 (436)
+.++ +++..|. |...|..++.++....+.
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 8899 6665552 256666666666655544
No 252
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.37 E-value=0.02 Score=59.77 Aligned_cols=183 Identities=17% Similarity=0.124 Sum_probs=129.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHc
Q 013821 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-----KGDLYRAEDYYNHATM-----ADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~ 280 (436)
.++...|..+|+.+.+. .+..+...+|.+|.. ..+.+.|+.+|+.+.+ ..-..+.+.+.+|.+|....
T Consensus 225 ~~~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 225 SGELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred chhhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 34567899999998877 467788888888875 4789999999999977 11225667888999887732
Q ss_pred ---C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 281 ---R-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 281 ---~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
. |+..|..+|.++.+.. ++.+.+.+|.++... . ...++..|.++|..|... .+
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g-----------------~--~~~d~~~A~~yy~~Aa~~--G~ 359 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG-----------------T--KERDYRRAFEYYSLAAKA--GH 359 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC-----------------C--ccccHHHHHHHHHHHHHc--CC
Confidence 2 5788999999988775 455666777433221 1 124678999999998764 45
Q ss_pred HHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHh
Q 013821 357 GEIMSQYAKLVWEL---HHDHDKALCYFERAVQASPADSHVLAAYACFLWET-EEDEDDSKSSDQFQQ 420 (436)
Q Consensus 357 ~~~~~~la~~~~~~---g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~ 420 (436)
..+.++++.++..= .++...|..++.++.+.. .+.+...++.++... ++++.+...+....+
T Consensus 360 ~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 360 ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 78889999887632 235899999999999888 345555566554443 677666655544443
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.35 E-value=0.014 Score=59.62 Aligned_cols=161 Identities=16% Similarity=0.066 Sum_probs=114.1
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCC-HHH-----HHHHHHH-HH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCH-PLL-----LRNYAQL-LQ----KKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~-~~~-----~~~la~~-~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
+..-.||-+.+++.+.++.+..-=. +.+ .+..+.. +. .....+.|.+.+....+..|+.....+..|.+
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL 276 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4445599999999999988732111 111 1111111 11 24567889999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ .++|++.|++++.....-.+.. ..++++++ +++.-+.+|++|..+|.+.++.+.-
T Consensus 277 ~~~~g~-~~~Ai~~~~~a~~~q~~~~Ql~---~l~~~El~---------------w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 277 ERLKGN-LEEAIESFERAIESQSEWKQLH---HLCYFELA---------------WCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHhcC-HHHHHHHHHHhccchhhHHhHH---HHHHHHHH---------------HHHHHHchHHHHHHHHHHHHhcccc
Confidence 888875 9999999999985433322211 12233333 8899999999999999999987654
Q ss_pred C-HHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHh
Q 013821 356 D-GEIMSQYAKLVWELHHDH-------DKALCYFERAVQA 387 (436)
Q Consensus 356 ~-~~~~~~la~~~~~~g~d~-------~eA~~~~~~al~~ 387 (436)
. +-..+..|.++...++ . ++|..+|.++-..
T Consensus 338 Ska~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHHHH
Confidence 3 3445667778888888 7 8888888887554
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.34 E-value=0.0055 Score=51.90 Aligned_cols=63 Identities=25% Similarity=0.249 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
.++..++..+...|++++|+..+++++..+|.+..++..+..+|...|+ ..+|++.|++....
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR-RAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHH
Confidence 4567788888999999999999999999999999999999999999986 99999999987543
No 255
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.17 Score=50.19 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC
Q 013821 212 DDSAEAEEYYKRMIDEY---PCH----PLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~---P~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~ 265 (436)
.+.+-|...++++..+- |.. -++...++.+|.... .+..|...+++++++....
T Consensus 61 ~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~ 122 (629)
T KOG2300|consen 61 KNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV 122 (629)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Confidence 44555555555554432 211 123344444444433 4444555555555554443
No 256
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.27 E-value=0.035 Score=53.85 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=115.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821 253 DYYNHATMADPGDGESWMQYAKLVWELHR-----------DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
.-|++.+..+|.+..+|..+....-.... -.+.-+.+|++|++.+|++...+..+-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l------------- 72 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYL------------- 72 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH-------------
Confidence 45788899999999999999876544421 035678899999999999999988887
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCC----C----
Q 013821 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE---LHHDHDKALCYFERAVQASP----A---- 390 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~d~~eA~~~~~~al~~~p----~---- 390 (436)
.+..+.-+-++..+.+++++..+|++...|..+-..... .-. +......|.+++..-. .
T Consensus 73 ---------~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~-v~~~~~~y~~~l~~L~~~~~~~~~~ 142 (321)
T PF08424_consen 73 ---------EEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT-VSDVRDVYEKCLRALSRRRSGRMTS 142 (321)
T ss_pred ---------HHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHhhcccccc
Confidence 666677788888999999999999999988766655443 123 6677778877775311 0
Q ss_pred ----------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 391 ----------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 391 ----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
...++..+..++.+.|-.+.|+..++-.++++
T Consensus 143 ~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 143 HPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 12566788888999999999999999999985
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.25 E-value=0.022 Score=55.63 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--H
Q 013821 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP----GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-D--S 301 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-~--~ 301 (436)
......|...+.+..+.|.++.|...+.++...++ ..+.+.+..+.+++..|+ ..+|+..++..+..... . .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhcccc
Confidence 34557888889999999999999998888887652 256788888888888875 88898888888872211 1 0
Q ss_pred H------------------------HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH------cCCHHHHHHHHHHHHH
Q 013821 302 N------------------------ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS------KGDLEGAEEYFSRAIL 351 (436)
Q Consensus 302 ~------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~g~~~~A~~~~~~al~ 351 (436)
. .....+.++...| ..... .+..++++..|++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a---------------~w~~~~~~~~~~~~~~~~~~~~~~a~~ 286 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLA---------------KWLDELYSKLSSESSDEILKYYKEATK 286 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHH---------------HHHHhhccccccccHHHHHHHHHHHHH
Confidence 0 0111122222222 22222 3677777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 013821 352 ANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~ 370 (436)
++|....+|+.+|..+...
T Consensus 287 ~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 287 LDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred hChhHHHHHHHHHHHHHHH
Confidence 7777777777777666443
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.25 E-value=0.24 Score=48.89 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=41.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821 367 VWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 367 ~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 417 (436)
++..|+ |.++.-+-.-..++.| .+.++..+|.++....+|++|..++..
T Consensus 472 Lysqge-y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 472 LYSQGE-YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHhccc-HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 456777 8888888888888999 699999999999999999999887653
No 259
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.22 E-value=0.015 Score=57.14 Aligned_cols=168 Identities=13% Similarity=0.126 Sum_probs=106.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHh---CCC
Q 013821 224 MIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFE-RAALA---APQ 299 (436)
Q Consensus 224 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~-~al~~---~p~ 299 (436)
.+..+|-+.+++..++.++..+|+++.|.+.+++|+-.-.. ++... +..-..... -...+ .+.
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~----------~~~~~---F~~~~~~~~~g~~rL~~~~~e 98 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER----------AFHPS---FSPFRSNLTSGNCRLDYRRPE 98 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------HHHHH---hhhhhcccccCccccCCcccc
Confidence 35678889999999999999999999999998888643111 10000 000000000 00011 133
Q ss_pred CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHhcCCHHHH
Q 013821 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKLV-WELHHDHDKA 377 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~d~~eA 377 (436)
|...+..+-... ..+.+.|-+..|.++.+-.+.++|. |+-....+...| .+.++ |+=-
T Consensus 99 NR~fflal~r~i-------------------~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~-y~~L 158 (360)
T PF04910_consen 99 NRQFFLALFRYI-------------------QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ-YQWL 158 (360)
T ss_pred chHHHHHHHHHH-------------------HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC-HHHH
Confidence 444333333222 6777899999999999999999998 765544444444 44555 7777
Q ss_pred HHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCh---------------HHHHHHHHHHHhhCCC
Q 013821 378 LCYFERAVQASPA-----DSHVLAAYACFLWETEED---------------EDDSKSSDQFQQVAPI 424 (436)
Q Consensus 378 ~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~---------------~eA~~~~~~al~l~p~ 424 (436)
+..++........ -+...+..+.+++.+++. ++|...+.+|+...|.
T Consensus 159 i~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 159 IDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 7777765542111 234567778888888888 8999999999987764
No 260
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.18 E-value=0.0003 Score=66.24 Aligned_cols=92 Identities=15% Similarity=0.028 Sum_probs=55.5
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
+.-.+..|.+++|++.|..++.++|..+..|...+.++++++++..|+..+..+++++|+...-+-..+.....++. +.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~-~e 199 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN-WE 199 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc-hH
Confidence 34445556666666666666666666666666666666666666666666666666666665555555555444442 55
Q ss_pred HHHHHHHHHHHhC
Q 013821 285 RALTYFERAALAA 297 (436)
Q Consensus 285 ~A~~~~~~al~~~ 297 (436)
+|...+..+.+++
T Consensus 200 ~aa~dl~~a~kld 212 (377)
T KOG1308|consen 200 EAAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHHhcc
Confidence 6655555555543
No 261
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.16 E-value=0.13 Score=50.20 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
...|..++.+..+.|. ++.|...+.++....+. .+.+.+..+.+++..|+..+|+..+...+.. .........
T Consensus 146 ~~~~l~~a~~aRk~g~-~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~- 222 (352)
T PF02259_consen 146 AETWLKFAKLARKAGN-FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI- 222 (352)
T ss_pred HHHHHHHHHHHHHCCC-cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc-
Confidence 4556666666666654 77777777777765421 4566666777777777766666666555441 000000000
Q ss_pred HHHHHHHH--------------HHhCCCCHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 342 AEEYFSRA--------------ILANPGDGEIMSQYAKLVWEL------HHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 342 A~~~~~~a--------------l~~~p~~~~~~~~la~~~~~~------g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
....+... .......+.++..+|...... +. .++++..|.++++.+|....+|..+|..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES-SDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc-HHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 00000000 000011245777777777777 66 8999999999999999999999999988
Q ss_pred HHHCCCh-----------------HHHHHHHHHHHhhCCCCh
Q 013821 402 LWETEED-----------------EDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 402 ~~~~g~~-----------------~eA~~~~~~al~l~p~~~ 426 (436)
+.+.-+. ..|+..|-+++.+.+.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~ 343 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYV 343 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCch
Confidence 6554211 347888888888887743
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.02 E-value=0.04 Score=47.01 Aligned_cols=82 Identities=18% Similarity=0.040 Sum_probs=73.0
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
++.+.+..+-...++.+++..++...--+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+--.++.|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45556666777788999999999999999999999999999999999999999999999999999999998999988877
Q ss_pred Hc
Q 013821 279 LH 280 (436)
Q Consensus 279 ~~ 280 (436)
++
T Consensus 91 ~~ 92 (160)
T PF09613_consen 91 LG 92 (160)
T ss_pred cC
Confidence 75
No 263
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.02 E-value=0.0005 Score=64.79 Aligned_cols=114 Identities=14% Similarity=0.017 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+++.|++.|..++.++|.....+...+ .++.+++++..|+..|..|+.++|+...-+-
T Consensus 129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~----------------------sv~lkl~kp~~airD~d~A~ein~Dsa~~yk 186 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPPLAILYAKRA----------------------SVFLKLKKPNAAIRDCDFAIEINPDSAKGYK 186 (377)
T ss_pred chhhhhcccccccccCCchhhhccccc----------------------ceeeeccCCchhhhhhhhhhccCcccccccc
Confidence 478888888888888888888887788 8888899999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821 362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 419 (436)
..+.+...+|+ |.+|...+..+.+++=+ ..+-..+-.+.-+.+..++-...+++..
T Consensus 187 frg~A~rllg~-~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 187 FRGYAERLLGN-WEEAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred hhhHHHHHhhc-hHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 99999999999 99999999999988754 2222333344334444444333344333
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.00 E-value=0.0015 Score=40.20 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666665555
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.083 Score=46.35 Aligned_cols=89 Identities=11% Similarity=0.125 Sum_probs=65.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA-DSHVLAAYACFLWETE 406 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g 406 (436)
..+...+++++|+..++.++....+. .-+-.+|+.++.++|. +++|+..+..... +. ....-...|.++...|
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg 173 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK-ADAALKTLDTIKE--ESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcC
Confidence 66777888888888888888654432 3356778888888888 8888887765322 11 1234566788888888
Q ss_pred ChHHHHHHHHHHHhhC
Q 013821 407 EDEDDSKSSDQFQQVA 422 (436)
Q Consensus 407 ~~~eA~~~~~~al~l~ 422 (436)
+.++|+..|+++++..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888988888888875
No 266
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.96 E-value=0.12 Score=52.07 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Q 013821 250 RAEDYYNHATMADPGDGESWMQYAKLVWELHRD--------------QHRALTYFERAALAAP-QDSNILAAYACFLWEM 314 (436)
Q Consensus 250 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 314 (436)
.-.-.|++++..-+-.+++|+..+..+...+ + -+++..+|++++..-- .+...++.++......
T Consensus 263 Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s-~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~ 341 (656)
T KOG1914|consen 263 RVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS-DLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESR 341 (656)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh-HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 3445678888888889999998876655543 3 4788999999987543 3555556666554443
Q ss_pred cC---chHHHHHHHHHHHH-------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013821 315 ED---DGEDDKAQEEHIQV-------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 315 g~---~~~A~~~~~~~~~~-------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~ 378 (436)
-+ .+.....+++.+.. ..-.+..-...|...|.+|-+..-.-..++..-|.+-+...+|..-|.
T Consensus 342 ~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~Af 421 (656)
T KOG1914|consen 342 YDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAF 421 (656)
T ss_pred cccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHH
Confidence 33 45555666655554 333344556777888888866544434555555555444444499999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
..|+-.+...++.+.....+...+..+++...|...|++++..
T Consensus 422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999876
No 267
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.13 Score=51.00 Aligned_cols=192 Identities=14% Similarity=0.070 Sum_probs=131.3
Q ss_pred HHhhhhhCCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH--HHHH
Q 013821 204 VDLIMPNFDDSAEAEEYYKRMIDE---YPC-------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DG--ESWM 270 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~---~P~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~--~~~~ 270 (436)
+..+-.-.|++.+|++....+.+. .|. .+..+..+|......+.++.|...|..|.+.... +. ..-.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344566789999999888877763 454 3466778888888899999999999999987544 33 3445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALAAPQDS---NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
++|.+|...++ +..+|+-.-.+.|.+. -.....+.+++..| ...+.++++.+|...+.
T Consensus 409 nlAi~YL~~~~----~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~g---------------lfaf~qn~lnEaK~~l~ 469 (629)
T KOG2300|consen 409 NLAISYLRIGD----AEDLYKALDLIGPLNTNSLSSQRLEASILYVYG---------------LFAFKQNDLNEAKRFLR 469 (629)
T ss_pred hHHHHHHHhcc----HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHH---------------HHHHHhccHHHHHHHHH
Confidence 67888777543 4444444444556532 22233444444444 77788999999999999
Q ss_pred HHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHH---HHHHHHHHHHHCCC--hHHHHH
Q 013821 348 RAILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---PADSH---VLAAYACFLWETEE--DEDDSK 413 (436)
Q Consensus 348 ~al~~~p~------~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---p~~~~---~~~~la~~~~~~g~--~~eA~~ 413 (436)
+.+++... .+-.+..|+.+....|+ ..++.....-++++. |+.+. ....+-.++...|+ .+++.+
T Consensus 470 e~Lkmanaed~~rL~a~~LvLLs~v~lslgn-~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e 548 (629)
T KOG2300|consen 470 ETLKMANAEDLNRLTACSLVLLSHVFLSLGN-TVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENE 548 (629)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHhcc-hHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 99988622 13356678888889999 999999999888765 55442 23445566777787 444444
Q ss_pred HH
Q 013821 414 SS 415 (436)
Q Consensus 414 ~~ 415 (436)
.|
T Consensus 549 ~~ 550 (629)
T KOG2300|consen 549 AF 550 (629)
T ss_pred HH
Confidence 44
No 268
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.017 Score=57.33 Aligned_cols=97 Identities=16% Similarity=0.274 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
..+-...|+.|+...+.|...|..+. ....+.+.+.+--..|.+++..+|+++++|..
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi----------------------~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~ 144 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYI----------------------AFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIY 144 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHH----------------------HHHHHhcchhHHHHHHHHHHHhCCCCchhHHh
Confidence 45677889999999999999999988 55556667889999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 363 la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
-|.-.+..+.+.+.|..+|.++|+.+|+.+..|..+-..
T Consensus 145 aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 145 AAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred hhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 999999988889999999999999999999887665544
No 269
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.095 Score=56.27 Aligned_cols=201 Identities=14% Similarity=0.069 Sum_probs=137.9
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD--PG-DGESWMQY 272 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l 272 (436)
+.+..|..+|....+.|...+|++-|-++ +++..|.....+..+.|.|++-+.++..|-+.. |. +.+..+.+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 44578999999999999999999988776 778888999999999999999999988887653 22 23333333
Q ss_pred HHH------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821 273 AKL------------------------VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 273 a~~------------------------~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
|.. ++..+. |+.|.-+| .+..-|..++..+..+|+++.|....+++-
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~-y~aAkl~y--------~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKM-YEAAKLLY--------SNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhh-hHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 222 111111 22222222 233445677888888888887777665221
Q ss_pred HH-------------------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013821 329 QV-------------------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 329 ~~-------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (436)
.. ..|...|-|++-+..++.++.+...+-..+..||.+|.+-
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-
Confidence 11 6788889999999999999998888888888899887765
Q ss_pred CCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHH
Q 013821 372 HDHDKALCYFERAVQAS--------PADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 372 ~d~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~ 412 (436)
+ +++-.++++-....- -+....|..+..+|.+-.+|+.|.
T Consensus 1327 k-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1327 K-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred C-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 4 566666655433211 123467777777777777777664
No 270
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.018 Score=57.18 Aligned_cols=95 Identities=17% Similarity=0.283 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
...-...|+.++...+.+...|..+.....+.+.+.+--..|.+++..+|+++..|..-|.-.+..+...+.|...|.++
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 35567789999999999999999999988888889999999999999999999999999988888887789999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 013821 294 ALAAPQDSNILAAYA 308 (436)
Q Consensus 294 l~~~p~~~~~~~~la 308 (436)
++.+|+.+..|..+-
T Consensus 167 LR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYF 181 (568)
T ss_pred hhcCCCChHHHHHHH
Confidence 999999998886444
No 271
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.93 E-value=0.12 Score=50.95 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH--HHHHHHH-----------------
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD--KAQEEHI----------------- 328 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~--~~~~~~~----------------- 328 (436)
.+..-|.-+|+.|+.-++|+..++.+++..+.+.......-.+. + ..+.+|+ ..+.+.+
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fv-K-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFV-K-QAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHH-H-HHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 44455666777776567888888888888887764432111100 0 0011111 0010000
Q ss_pred ----HH-----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821 329 ----QV-----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 329 ----~~-----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~ 383 (436)
.. ..++.+|+|.++.-+-.-..++.| .+.++..+|.+++...+ |++|..++..
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~-Y~eA~~~l~~ 520 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR-YQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh-HHHHHHHHHh
Confidence 00 677889999999999999999999 79999999999999999 9999999875
No 272
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.88 E-value=0.22 Score=52.98 Aligned_cols=194 Identities=16% Similarity=0.145 Sum_probs=115.9
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHH
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYPC---------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----GESWM 270 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~ 270 (436)
+.......++.+|..+..++...-+. .+......|.+....|++++|+++.+.++..-|.+ ..+..
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 33556678888888888887765433 12455667788888999999999999999887765 34566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHH--HHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH--HHH
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALAAPQ----DSNILA--AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL--EGA 342 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~----~~~~~~--~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~--~~A 342 (436)
.+|.+..-.| ++++|..+.+.+.+.... ...+|. ..+ .++..+|+. ++.
T Consensus 502 v~~~a~~~~G-~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s----------------------~il~~qGq~~~a~~ 558 (894)
T COG2909 502 VLGEAAHIRG-ELTQALALMQQAEQMARQHDVYHLALWSLLQQS----------------------EILEAQGQVARAEQ 558 (894)
T ss_pred hhhHHHHHhc-hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH----------------------HHHHHhhHHHHHHH
Confidence 6777766666 599999999888877433 222222 223 555556622 222
Q ss_pred HHHHHHH----HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC--HH-HHHHHHHHHHHCCChHHH
Q 013821 343 EEYFSRA----ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA----SPAD--SH-VLAAYACFLWETEEDEDD 411 (436)
Q Consensus 343 ~~~~~~a----l~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~eA 411 (436)
+..|... +...|-+.-.....+.+++..-+ ++.+.....+.+++ .|.. .. ++..++.+++..|+.++|
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A 637 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKA 637 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHH
Confidence 2222222 12233333344444444444444 55555555554443 2222 11 224677778888888888
Q ss_pred HHHHHHHHhhC
Q 013821 412 SKSSDQFQQVA 422 (436)
Q Consensus 412 ~~~~~~al~l~ 422 (436)
...+.+...+.
T Consensus 638 ~~~l~~~~~l~ 648 (894)
T COG2909 638 LAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHh
Confidence 77777766653
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.85 E-value=0.0023 Score=39.32 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p 389 (436)
.+|+.+|.++..+|+ +++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~-~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD-YEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCC
Confidence 345556666666655 6666666666666555
No 274
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.85 E-value=0.0058 Score=61.48 Aligned_cols=104 Identities=17% Similarity=0.143 Sum_probs=92.5
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
|......|+...|++++..++-..|... ....++|+++..-|-.-+|-.++.+++.++-..+..++.+|.++..+++ .
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~-i 692 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN-I 692 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh-h
Confidence 5566678999999999999999998665 4578999999999999999999999999998899999999999999974 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 284 HRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
+.|++.|++|++++|+++.....+-.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 99999999999999999887765553
No 275
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.81 E-value=0.19 Score=49.50 Aligned_cols=201 Identities=11% Similarity=0.137 Sum_probs=139.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 013821 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA- 297 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~- 297 (436)
-.+++++..-|-.++.|+.....+...++-+.|+....+++...|. ....++.++... .|-+....+|+++++.-
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~-nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELV-NDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhc-ccHHHHhhhHHHHHHHHH
Confidence 3568888888888999999999999999999999999998888776 555566554433 34566666666665321
Q ss_pred --------------CCCH----H-----------HHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHH
Q 013821 298 --------------PQDS----N-----------ILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQS 335 (436)
Q Consensus 298 --------------p~~~----~-----------~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~ 335 (436)
.++. + +|..+.+...+......|..++.++-+. .-+..
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh
Confidence 0011 1 2222333333444445555555544443 55667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHH
Q 013821 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--SHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~ 413 (436)
.|++.-|-..|+-.+...|+++......-..+...++ -..|..+|++++..-.+. ..+|..+...-..-|+...+..
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind-e~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND-EENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc-HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 8899999999999999999988777777777788888 788999999887654433 4667777777777788877777
Q ss_pred HHHHHHhhCCC
Q 013821 414 SSDQFQQVAPI 424 (436)
Q Consensus 414 ~~~~al~l~p~ 424 (436)
.-++...+.|.
T Consensus 524 Le~rf~e~~pQ 534 (660)
T COG5107 524 LEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHcCc
Confidence 76666666654
No 276
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.75 E-value=0.12 Score=47.72 Aligned_cols=175 Identities=11% Similarity=0.082 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCC
Q 013821 212 DDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~d 282 (436)
.+.++|+.-|++.+++.+.-. .++..+..+++.+++|++-.+.|.+.+.. ..+..+-..+-..-|....++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456788888888888776554 45666777778888888887777776653 112111111111111222222
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHH----HHHHHHHHccCchHHHHHHHHHHHH------------------------hH
Q 013821 283 QHRALTYFERAALA--APQDSNILA----AYACFLWEMEDDGEDDKAQEEHIQV------------------------LP 332 (436)
Q Consensus 283 ~~~A~~~~~~al~~--~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~~~~~------------------------~~ 332 (436)
.+--..+|+..++. +..+...|+ .+|.+++..+.+.+-.+++.+.-+. ..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 34444455544433 223444443 5677777777776666666543332 56
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 333 IQSKGDLEGAEEYFSRAILANPGD--GEIMSQ----YAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~----la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
|..+++-.+-...|++++.+...- +.++-. =|....+.|+ |++|-..|-.|+..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~-fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGE-FEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccch-HHHHHhHHHHHHhc
Confidence 666777777777888887764322 222222 2334556677 88887777776654
No 277
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.47 Score=47.90 Aligned_cols=208 Identities=16% Similarity=0.115 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DGESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
....+.+.......|+++...+..+.++...|+.+.|+..++..+...-. ..-.++.+|.++..+.+ |.+|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~-~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQ-YSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHH
Confidence 45556666667788999999999999999999988899999888871111 12345667777777765 9999999988
Q ss_pred HHHhCCCCHHHHHHHH-HHH--------HHccCchHHHHHHHH---HHHH---------------hHHHHcC--------
Q 013821 293 AALAAPQDSNILAAYA-CFL--------WEMEDDGEDDKAQEE---HIQV---------------LPIQSKG-------- 337 (436)
Q Consensus 293 al~~~p~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~---~~~~---------------~~~~~~g-------- 337 (436)
..+...-..-.+..++ -++ ...++.+++....+. .+.. .-+...+
T Consensus 329 L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~l 408 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILL 408 (546)
T ss_pred HHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccc
Confidence 8877654433333333 222 222344443333321 1111 1111111
Q ss_pred -----------------CHHHHHHHHHHHHHh----CCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC--
Q 013821 338 -----------------DLEGAEEYFSRAILA----NPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQA---SPA-- 390 (436)
Q Consensus 338 -----------------~~~~A~~~~~~al~~----~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~~al~~---~p~-- 390 (436)
...+.+ .++..++. ++++ .-.+..+|.++..+|+ ...|..+|...++. ...
T Consensus 409 a~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~-~~~a~~~f~i~~~~e~~~~~d~ 486 (546)
T KOG3783|consen 409 ASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGD-SEVAPKCFKIQVEKESKRTEDL 486 (546)
T ss_pred cchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhcccc
Confidence 111111 11111111 1111 2346678999999998 89999999998843 222
Q ss_pred --CHHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhCCCC
Q 013821 391 --DSHVLAAYACFLWETEE-DEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 391 --~~~~~~~la~~~~~~g~-~~eA~~~~~~al~l~p~~ 425 (436)
.|.+++.+|.+++.+|. ..++.+++.+|.+-..++
T Consensus 487 w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 487 WAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred ccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 24789999999999999 999999999999876544
No 278
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.69 E-value=0.043 Score=43.61 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=60.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821 238 YAQLLQKKGDLYRAEDYYNHATMADPGDGES---WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 238 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
+|.-++..|++-+|++..+..+...+++... +..-|.+++. .+...+..+....+.++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~-------------lA~~ten~d~k~~yLl~------ 62 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK-------------LAKKTENPDVKFRYLLG------ 62 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH-------------HHHhccCchHHHHHHHH------
Confidence 3556667777777777777777776665533 2333333322 22233322333333333
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
++++|.++..+.|..+..++.+|.-+..... |+++..-.+++|.+
T Consensus 63 ---------------------------sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~-Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 ---------------------------SVECFSRAVELSPDSAHSLFELASQLGSVKY-YKKAVKKAKRGLSV 107 (111)
T ss_pred ---------------------------hHHHHHHHhccChhHHHHHHHHHHHhhhHHH-HHHHHHHHHHHhcc
Confidence 5777777777777777777777766555545 67777777776654
No 279
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.16 Score=54.66 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
+.+.+|..+|.+..+.|...+|++-|-+| +++..+.....+....+. |++-++++.-+-+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~-~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK-YEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc-HHHHHHHHHHHHHh
Confidence 44567777777777777777777777554 566666666666666654 77777777666544
No 280
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.59 E-value=0.023 Score=43.82 Aligned_cols=77 Identities=12% Similarity=-0.028 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--SHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al 419 (436)
.+..+++.++.+|++..+.+.+|..+...|+ +++|++.+-.+++.+++. ..+...+-.++..+|.-+..+..|++-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~-~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGD-YEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3567889999999999999999999999999 999999999999988765 5777888888888888777766666654
No 281
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.59 E-value=1.3 Score=47.00 Aligned_cols=237 Identities=14% Similarity=0.051 Sum_probs=130.7
Q ss_pred cCCCChHHHHHhhcCCCCCCch-----hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC---CH-HHHHHH--HHHHHHc
Q 013821 177 ERPVSPPMYLAMGLGISVPGFD-----DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC---HP-LLLRNY--AQLLQKK 245 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~-~~~~~l--a~~~~~~ 245 (436)
.+.+.|+.++.+|+.+.....- ..-..++.++.+.+... |+..+++.++.... .. ...+.+ ...+...
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~ 152 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH 152 (608)
T ss_pred CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence 3667778888888777653111 22334566666666655 88888887775433 11 111222 2222233
Q ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHH
Q 013821 246 GDLYRAEDYYNHATMAD--PGDGESWMQ----YAKLVWELHRDQHRALTYFERAALAAP----------QDSNILAAYAC 309 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~--p~~~~~~~~----la~~~~~~~~d~~~A~~~~~~al~~~p----------~~~~~~~~la~ 309 (436)
+++..|++.++...... ..++.+... .+.++...+ ..+++++..+++..... ....+|..+-.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 67888888888777664 344433222 222333332 25667777776643221 12333333332
Q ss_pred H--HHHccCchHHHHHHH---HHHHH---------------------------------------------------hHH
Q 013821 310 F--LWEMEDDGEDDKAQE---EHIQV---------------------------------------------------LPI 333 (436)
Q Consensus 310 ~--~~~~g~~~~A~~~~~---~~~~~---------------------------------------------------~~~ 333 (436)
+ ....|+...+...+. +.+.. ...
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~ 311 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHN 311 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHH
Confidence 2 333333333333322 11000 344
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 334 QSKGDLEGAEEYFSRAILANPGD--------------------------GEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~--------------------------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
...+..++|.+++.++++.-.+. ..+....+.+..-.++ +..|...++.+...
T Consensus 312 ~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~-~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 312 LYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD-WSKATQELEFMRQL 390 (608)
T ss_pred hhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHH
Confidence 44566667888888777651110 1133455555666777 88888888877654
Q ss_pred C---CC------CHHHHHHHHHHHHHCCChHHHHHHHH
Q 013821 388 S---PA------DSHVLAAYACFLWETEEDEDDSKSSD 416 (436)
Q Consensus 388 ~---p~------~~~~~~~la~~~~~~g~~~eA~~~~~ 416 (436)
. |. .+.+++..|..+...|+.+.|..+|.
T Consensus 391 ~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 391 CQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3 22 35677888888889999999999998
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.16 Score=44.62 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHH
Q 013821 250 RAEDYYNHATMADPGDG---ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKA 323 (436)
Q Consensus 250 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~ 323 (436)
+.+...++....++... .+-..+|..+...++ +++|+..++.++....+. .-+-..++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~-~d~A~aqL~~~l~~t~De~lk~l~~lRLA--------------- 133 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANN-LDKAEAQLKQALAQTKDENLKALAALRLA--------------- 133 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHccchhHHHHHHHHHHHH---------------
Confidence 33444444555554443 344567777778774 999999988888654442 22335566
Q ss_pred HHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821 324 QEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 324 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~ 391 (436)
.+...+|.+++|+..+...-.-.- .+......|.++...|+ -++|+..|+++++..++.
T Consensus 134 -------rvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~-k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 134 -------RVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD-KQEARAAYEKALESDASP 192 (207)
T ss_pred -------HHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc-hHHHHHHHHHHHHccCCh
Confidence 777778888888777655422110 12345567888888888 888888888888887553
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.51 E-value=0.0054 Score=37.15 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPG 264 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 264 (436)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555553
No 284
>PRK10941 hypothetical protein; Provisional
Probab=96.49 E-value=0.038 Score=51.85 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=62.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|. +..|...++..++..|+++.+......
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c-~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC-EHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 888999999999999999999999999999999999999999 999999999999999998866544333
No 285
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.45 E-value=0.039 Score=51.56 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=34.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
.+.|+.++|...|+.|+++.|.+++++..+|.+.... ++.-+|-.+|-+|+.++|.+.+++.+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3445555555555555555555555555555443333 3455555555555555555555554444
No 286
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.45 E-value=0.0079 Score=56.06 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=62.3
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.+.|+.++|..+|+.++.+.|++++++..+|.+....++.-+|-.+|-+|+.+.|.+.+++.+.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3459999999999999999999999999999999999999999999999999999999988877654
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.40 E-value=0.0069 Score=37.91 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
|.++|.+|...|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.23 E-value=0.011 Score=35.79 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
+++.+|.++...|+ +++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~-~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGD-YDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHHHCcC
Confidence 45556666666655 66666666666665554
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.21 E-value=0.0069 Score=37.92 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.0
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHh
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDE 227 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 227 (436)
+|.++|.++...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999996643
No 290
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.17 E-value=0.2 Score=52.13 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=102.3
Q ss_pred hhHHhhhhhCCCHHHHHHHHHH------HHHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKR------MIDE----YPCHP-LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~------al~~----~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (436)
-..|.++.+..++++|+++|++ ++++ .|... ..--..|.-+.+.|+++.|+.+|-.+--+-
T Consensus 665 dkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~-------- 736 (1636)
T KOG3616|consen 665 DKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI-------- 736 (1636)
T ss_pred HhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH--------
Confidence 3445556666666667666654 2222 12221 122234555556677777776665442110
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHH
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYF 346 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~ 346 (436)
.-...-... +++.+|+..++..-... .....+-..+.-|...|+++.|.+++.+.-.. ..|-+.|+|.+|.+.-
T Consensus 737 kaieaai~a-kew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 737 KAIEAAIGA-KEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HHHHHHhhh-hhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHH
Confidence 000000111 12455554444332211 11222334556666667777776666532211 6677788888776655
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHH-------------HHHHHHH------HH----hCCCC-HHHHHHHHHH
Q 013821 347 SRAILANPGD-GEIMSQYAKLVWELHHDHDKA-------------LCYFERA------VQ----ASPAD-SHVLAAYACF 401 (436)
Q Consensus 347 ~~al~~~p~~-~~~~~~la~~~~~~g~d~~eA-------------~~~~~~a------l~----~~p~~-~~~~~~la~~ 401 (436)
++.. .|.. ...|...+.-+-..|+ |.+| +.+|.+. +. ..|+. .+.+..++.-
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgk-f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e 891 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGK-FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKE 891 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcc-hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHH
Confidence 5442 2332 2233344444455555 5444 4444442 11 12332 2566778888
Q ss_pred HHHCCChHHHHHHHHHHHh
Q 013821 402 LWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 402 ~~~~g~~~eA~~~~~~al~ 420 (436)
|...|+...|...|-++-.
T Consensus 892 ~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHhccChhHHHHHHHhhhh
Confidence 8888888888877765543
No 291
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.14 E-value=0.036 Score=38.04 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
+.++.+|..+++.|+|++|..+.+.+++.+|++..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 356777777888888888888888888888877766554443
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.13 E-value=0.21 Score=41.96 Aligned_cols=79 Identities=13% Similarity=-0.082 Sum_probs=67.8
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
+.+-.+-...++.+++..++..+--+.|+.+.+-..-|.++...|+|.+|+..++......+..+..--.++.|++.++
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 3333444557899999999999999999999999999999999999999999999999988888888888888887776
No 293
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.19 Score=51.18 Aligned_cols=143 Identities=17% Similarity=0.000 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRN--YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTY 289 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~ 289 (436)
+...-++..+...+.++|.++..+.. +...+...++...+...+..++..+|.+..+..+++..+...+..+.-+...
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444777777777888888866443 4667777888889999999999999999999999998888877755666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 290 FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (436)
.+.+....|++......+..++. .+ ......|+..++....+++.++.|.++.+...+.....+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQ-LG---------------RYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHH-HH---------------HHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 66689999999988877765555 44 677788999999999999999999987777666665433
Q ss_pred h
Q 013821 370 L 370 (436)
Q Consensus 370 ~ 370 (436)
.
T Consensus 189 ~ 189 (620)
T COG3914 189 Q 189 (620)
T ss_pred h
Confidence 3
No 294
>PRK10941 hypothetical protein; Provisional
Probab=96.06 E-value=0.055 Score=50.79 Aligned_cols=67 Identities=13% Similarity=-0.010 Sum_probs=38.6
Q ss_pred HHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWM 270 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (436)
+-.++.+.++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|...++..++..|+++.+..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3335555566666666666666666655555555666666666666666666655555555554443
No 295
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.06 E-value=0.062 Score=42.70 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=67.8
Q ss_pred HHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCCCCHHHH
Q 013821 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKG----D-------LYRAEDYYNHATMADPGDGESW 269 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g----~-------~~~A~~~~~~al~~~p~~~~~~ 269 (436)
++..++..|++-+|+++.+..+..++++. ..+...|.++..+. + .-.+++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 34567888999999999999999988776 55667777776533 2 2357788888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 270 MQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
+.+|.-+-.... |++++.-.++++.+
T Consensus 82 ~~la~~l~s~~~-Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKY-YKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHH-HHHHHHHHHHHhcc
Confidence 887766544443 77777777776654
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=0.34 Score=50.22 Aligned_cols=187 Identities=17% Similarity=0.073 Sum_probs=103.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-----DGE---SWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~---~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
++.+| ++..|..+|.....+-.++-|...|-+.-....- -.. --...|.+-..-| +|++|.+.|-.+=+.
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g-~feeaek~yld~drr 763 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYG-EFEEAEKLYLDADRR 763 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhc-chhHhhhhhhccchh
Confidence 44566 7889999999888888888888877665321110 000 0011222222223 366666655332111
Q ss_pred C-------------------------C---CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHH
Q 013821 297 A-------------------------P---QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEE 344 (436)
Q Consensus 297 ~-------------------------p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~ 344 (436)
+ . ....++.++|..+..+..+++|.+.|...-.. .+++...+|++-+.
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~ 843 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEV 843 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHH
Confidence 1 1 12345666676666666666666665532221 44555555544332
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------------HHhC-----CCCHHHHHHHHH
Q 013821 345 YFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA-------------------VQAS-----PADSHVLAAYAC 400 (436)
Q Consensus 345 ~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a-------------------l~~~-----p~~~~~~~~la~ 400 (436)
+ ...-|++.+.+-.+|..+...|. -++|.+.|-+. +++. |.-.......+.
T Consensus 844 l----a~~Lpe~s~llp~~a~mf~svGM-C~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aa 918 (1189)
T KOG2041|consen 844 L----ARTLPEDSELLPVMADMFTSVGM-CDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAA 918 (1189)
T ss_pred H----HHhcCcccchHHHHHHHHHhhch-HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 2 23347888888888888888888 88887766442 1111 111122233344
Q ss_pred HHHHCCChHHHHHHHHHH
Q 013821 401 FLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 401 ~~~~~g~~~eA~~~~~~a 418 (436)
-+...++.-+|++.++++
T Consensus 919 qll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHhhcchHHHHHHhhhc
Confidence 456667778888877766
No 297
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.02 E-value=0.12 Score=39.96 Aligned_cols=64 Identities=14% Similarity=-0.016 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHc
Q 013821 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD--GESWMQYAKLVWELH 280 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~ 280 (436)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++.. ..+...+-.++..+|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 4667888899999999999999999999999999999999998887764 444444444444444
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.01 E-value=0.14 Score=43.63 Aligned_cols=78 Identities=18% Similarity=0.075 Sum_probs=67.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
.+-...++.+++...+...--+.|..+++-..-|+++...|+ |.+|+..|+.+.+..|..+.+-..++.|+..+|+.+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~-w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGD-WDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCC-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 556677889999998888888899999999999999999999 999999999988888888888888888888887753
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.00 E-value=0.33 Score=45.99 Aligned_cols=124 Identities=15% Similarity=0.095 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-CHHHHHHHHHHHHHh----CC--
Q 013821 283 QHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-DLEGAEEYFSRAILA----NP-- 354 (436)
Q Consensus 283 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~----~p-- 354 (436)
++.|..++.|+-... ..++.....++.+++..| ......+ +++.|..++++++++ .+
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G---------------~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~ 73 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG---------------KSLLSKKDKYEEAVKWLQRAYDILEKPGKMD 73 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH---------------HHHHHcCCChHHHHHHHHHHHHHHHhhhhcc
Confidence 555555555554444 334444444444444444 4455556 777777777777766 21
Q ss_pred -C-------CHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 355 -G-------DGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 355 -~-------~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
. ...++..++.++...+. ..++|...++.+-.-.|+.+..+...-.++.+.++.+++.+.+.+++.-
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1 12355666777766655 1233444444444455666666655555555567777777777666653
No 300
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.36 Score=49.18 Aligned_cols=139 Identities=17% Similarity=0.094 Sum_probs=103.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821 245 KGDLYRAEDYYNHATMADPGDGESWMQY--AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
.+...-++..+...+.+++.++..+... ...+...+ +...+.-.+..++..+|.+..+..+++.
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~L~~------------- 109 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLA-DSTLAFLAKRIPLSVNPENCPAVQNLAA------------- 109 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccc-cchhHHHHHhhhHhcCcccchHHHHHHH-------------
Confidence 3444457777777788899888875544 54444454 4778899999999999999999999994
Q ss_pred HHHHHHHHhHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 323 AQEEHIQVLPIQSKGD-LEGAEEYFSRAILANPGDGEIMSQY------AKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 323 ~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l------a~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~ 395 (436)
.....|. +..+..+.+.+....|.+......+ +..+..+|+ ..++...+++++.+.|.++.+.
T Consensus 110 ---------ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 110 ---------ALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR-TAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred ---------HHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhhhhhhhhH
Confidence 3333444 4445555556888899988877666 888888999 9999999999999999988776
Q ss_pred HHHHHHHHHCCC
Q 013821 396 AAYACFLWETEE 407 (436)
Q Consensus 396 ~~la~~~~~~g~ 407 (436)
..+.....++..
T Consensus 180 ~~~~~~r~~~cs 191 (620)
T COG3914 180 GALMTARQEQCS 191 (620)
T ss_pred hHHHHHHHHhcc
Confidence 666655444433
No 301
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.99 E-value=0.27 Score=48.40 Aligned_cols=119 Identities=15% Similarity=0.125 Sum_probs=80.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-------------------
Q 013821 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA------------------- 352 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------- 352 (436)
..+..+|-+.+++..++.++. .+|+.+.|.+.+++||-.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~----------------------~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYR----------------------QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHH----------------------HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC
Confidence 345678999999999995554 455555555555544321
Q ss_pred -------CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 353 -------NPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPA-DSHV-LAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 353 -------~p~~~---~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
.+.|- .+++.....+.+.|. +..|.++++-.+.++|. |+.. +..+-....+.++++--++.++....
T Consensus 89 ~~rL~~~~~eNR~fflal~r~i~~L~~RG~-~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 89 NCRLDYRRPENRQFFLALFRYIQSLGRRGC-WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccccCCccccchHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 12232 356667778889999 99999999999999999 7744 44455556677888777777776544
Q ss_pred --------hCCCChhHHhhhh
Q 013821 421 --------VAPIRQGAVTTAN 433 (436)
Q Consensus 421 --------l~p~~~~~~~~a~ 433 (436)
.-|++.-..+.|.
T Consensus 168 ~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 168 KCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred hhhhhhhhhCccHHHHHHHHH
Confidence 3466666555443
No 302
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.98 E-value=0.13 Score=41.29 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=66.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HhCCCCHH
Q 013821 333 IQSKGDLEGAEEYFSRAILANPG------------DGEIMSQYAKLVWELHHDHDKALCYFERAV-------QASPADSH 393 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~d~~eA~~~~~~al-------~~~p~~~~ 393 (436)
....|-|++|...+++|+++... ++-.+..|+.++..+|+ |++++..-.++| +++.+...
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr-y~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR-YDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHhhccccccccch
Confidence 34568999999999999988422 24567788899999999 998887766666 45666554
Q ss_pred ----HHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 394 ----VLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 394 ----~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
+.+..+..+..+|+.++|+..|+.+-++
T Consensus 98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4477888999999999999999998775
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.83 E-value=0.05 Score=37.29 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~ 400 (436)
+.++.+|..++++|+ |++|..+++.+|++.|++..+......
T Consensus 2 d~lY~lAig~ykl~~-Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGE-YEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhh-HHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 457788888888988 999999999999999988776554443
No 304
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.73 E-value=1.6 Score=41.51 Aligned_cols=176 Identities=14% Similarity=0.023 Sum_probs=95.6
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------------C-
Q 013821 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-----------------------D- 265 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----------------------~- 265 (436)
+..+..+-++.-..+++++|+.+.+|..++.- ...-..+|.+.+++|++.... +
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv 273 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV 273 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence 34555666777777888888888777777652 222345666666666653110 1
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821 266 -GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD--SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 266 -~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
..+-..++.|-.++|+ ..+|++.++...+-.|-. ..++-++...+....-+.+...++. -|........|
T Consensus 274 l~YIKRRLAMCARklGr-lrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa------kYDdislPkSA 346 (556)
T KOG3807|consen 274 LVYIKRRLAMCARKLGR-LREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA------KYDDISLPKSA 346 (556)
T ss_pred hhHHHHHHHHHHHHhhh-HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhccccCcchH
Confidence 2334567777777775 888888888887777632 2233445444444433333333331 12223333444
Q ss_pred HHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 343 EEYFSRAILAN-----PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 343 ~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la 399 (436)
.-+|..|+-.. .-.+++-...|..-. -..|++.+.+|++.+|.-+..+..+-
T Consensus 347 ~icYTaALLK~RAVa~kFspd~asrRGLS~A-----E~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 347 AICYTAALLKTRAVSEKFSPETASRRGLSTA-----EINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHHHHHHHHHHhhcCchhhhhccccHH-----HHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 44554443221 111222222222211 23577888889999988776665544
No 305
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.73 E-value=0.34 Score=47.85 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=112.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-
Q 013821 252 EDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV- 330 (436)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 330 (436)
--.+++++..-|-.+++|+.....+...+ |-+.|+...++++...|. ....++.++....+.+.....++.+.+.
T Consensus 288 ~y~~~q~~~y~~~~~evw~dys~Y~~~is-d~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 288 HYIHNQILDYFYYAEEVWFDYSEYLIGIS-DKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhcc-HHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 34577888888889999999887766665 588999988888887776 5555666655555544444444433222
Q ss_pred -----------------------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 331 -----------------------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE 369 (436)
Q Consensus 331 -----------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (436)
..-.+..-.+.|...|-++-+..-...+++..-|.+-+.
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~ 443 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY 443 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH
Confidence 111122334555566665544432334555555555444
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 370 LHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 370 ~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
..+|+.-|-..|+-.+...|+.+.....+-..+...++...|...|++++.
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 334499999999999999999998888888899999999999999996554
No 306
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.70 E-value=0.11 Score=47.13 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=47.3
Q ss_pred hHHHHcCCH-------HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHH
Q 013821 331 LPIQSKGDL-------EGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-HVLA 396 (436)
Q Consensus 331 ~~~~~~g~~-------~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-~~~~ 396 (436)
|+|..+|+. .+|.+.|.+++.... +...+++.+|.+..+.|+ +++|+.+|.+++....... ..+.
T Consensus 126 WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~-~~eA~~~fs~vi~~~~~s~~~~l~ 204 (214)
T PF09986_consen 126 WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGN-YDEAKRWFSRVIGSKKASKEPKLK 204 (214)
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHcCCCCCCcHHHH
Confidence 666666663 456666666665532 225678889999999999 9999999999887543322 3455
Q ss_pred HHHHHH
Q 013821 397 AYACFL 402 (436)
Q Consensus 397 ~la~~~ 402 (436)
.+|.-+
T Consensus 205 ~~AR~~ 210 (214)
T PF09986_consen 205 DMARDQ 210 (214)
T ss_pred HHHHHH
Confidence 555443
No 307
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.68 E-value=1.5 Score=44.11 Aligned_cols=178 Identities=11% Similarity=0.059 Sum_probs=115.2
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
++...-.++-.+-++.+++.... +..+++.++++|... ..++-...+++.++.+-++...-..|+..|.. . +...+
T Consensus 75 ~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i-k~sk~ 150 (711)
T COG1747 75 IFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I-KKSKA 150 (711)
T ss_pred HhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h-chhhH
Confidence 34344445555667777777654 667888899998887 66777788888888888888888888877665 3 37888
Q ss_pred HHHHHHHHHhC-CC--CH---HHHHHHHHHHHHcc-CchHHHHHHHHHHHH--------------hHHHHcCCHHHHHHH
Q 013821 287 LTYFERAALAA-PQ--DS---NILAAYACFLWEME-DDGEDDKAQEEHIQV--------------LPIQSKGDLEGAEEY 345 (436)
Q Consensus 287 ~~~~~~al~~~-p~--~~---~~~~~la~~~~~~g-~~~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~ 345 (436)
..+|.+++..- |. +. ++|..+-. ..| +.+.-.....+.-.. .-|....+|.+|++.
T Consensus 151 a~~f~Ka~yrfI~~~q~~~i~evWeKL~~---~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~I 227 (711)
T COG1747 151 AEFFGKALYRFIPRRQNAAIKEVWEKLPE---LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRI 227 (711)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHH---hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHH
Confidence 88888887543 21 11 22222221 111 112222211111000 445667899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHHHhCCCC
Q 013821 346 FSRAILANPGDGEIMSQYAKLVWE-------------------LHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~-------------------~g~d~~eA~~~~~~al~~~p~~ 391 (436)
+...++.+..+..+.-++...+.. .|+++.+++..|++.+-.+..+
T Consensus 228 lk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 228 LKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 999999998888887777766654 3555778888888777665543
No 308
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.66 E-value=3.7 Score=43.61 Aligned_cols=187 Identities=16% Similarity=0.127 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHHcCC
Q 013821 214 SAEAEEYYKRMIDEYPC----HPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPG--DG----ESWMQYAKLVWELHRD 282 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~~~d 282 (436)
...|+.+++-+++..+- .+.+++.+|.+++ ...+++.|..++++++.+... .. ...+.++.++...+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~-- 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN-- 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC--
Confidence 35678888887753221 3477899999998 799999999999999887643 22 23445677777765
Q ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 013821 283 QHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PGDGEI 359 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 359 (436)
...|...++++++.... ....|...-.++.- ..+...+++..|++.++...... ..++.+
T Consensus 115 ~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~-----------------~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 115 PKAALKNLDKAIEDSETYGHSAWYYAFRLLKI-----------------QLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHH-----------------HHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 44599999999987655 22223222222101 22323389999999999988775 354443
Q ss_pred HH----HHHHHHHHhcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHH--HHHCCChHHHHHHHHHHHh
Q 013821 360 MS----QYAKLVWELHHDHDKALCYFERAVQASP----------ADSHVLAAYACF--LWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 360 ~~----~la~~~~~~g~d~~eA~~~~~~al~~~p----------~~~~~~~~la~~--~~~~g~~~eA~~~~~~al~ 420 (436)
.. .-+.+....+. .+++++.++++..... ....+|..+-.+ ....|+++.+...+++...
T Consensus 178 ~v~~~l~~~~l~l~~~~-~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGS-PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 22344445565 6778887777743221 123455555443 5667777777766655444
No 309
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.65 E-value=1.3 Score=47.42 Aligned_cols=192 Identities=16% Similarity=0.082 Sum_probs=116.1
Q ss_pred hHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHH
Q 013821 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG----D--GESWMQ 271 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~ 271 (436)
-.|.+....|++++|+++.+.++..-|.+. .++..+|.+..-.|++++|..+..++.+.... . ..+...
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~ 542 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQ 542 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 346688889999999999999999877653 56788999999999999999999999887332 2 233344
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013821 272 YAKLVWELHR-DQHRALTYFERAA----LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 272 la~~~~~~~~-d~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.+.++..+|. -+.+....|...- ...|-........+.++ +.+.+ ++.+..-.
T Consensus 543 ~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll-------------------~~~~r---~~~~~~ea 600 (894)
T COG2909 543 QSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL-------------------RAWLR---LDLAEAEA 600 (894)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH-------------------HHHHH---HhhhhHHh
Confidence 5666666651 0333333333322 22233333333344322 22222 44444444
Q ss_pred HHHHHh----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---H--HHHHHHH--HHHHHCCChHHHH
Q 013821 347 SRAILA----NPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPAD---S--HVLAAYA--CFLWETEEDEDDS 412 (436)
Q Consensus 347 ~~al~~----~p~~~---~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~---~--~~~~~la--~~~~~~g~~~eA~ 412 (436)
...+++ .|... -+++.++.+.+..|+ +++|...+.....+.-.. + .+..... .....+|+..+|.
T Consensus 601 r~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gd-l~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~ 679 (894)
T COG2909 601 RLGIEVGSVYTPQPLLSRLALSMLAELEFLRGD-LDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAA 679 (894)
T ss_pred hhcchhhhhcccchhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHH
Confidence 444443 33322 233578999999999 999999888876653221 1 1112222 2234467777777
Q ss_pred HHHHH
Q 013821 413 KSSDQ 417 (436)
Q Consensus 413 ~~~~~ 417 (436)
....+
T Consensus 680 ~~l~~ 684 (894)
T COG2909 680 EWLLK 684 (894)
T ss_pred HHHHh
Confidence 66555
No 310
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.64 E-value=0.019 Score=33.55 Aligned_cols=30 Identities=37% Similarity=0.476 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
++..+|.++...+++++|+..|+++++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 311
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=1.2 Score=52.62 Aligned_cols=212 Identities=13% Similarity=0.109 Sum_probs=127.4
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAK-LVWELHRDQHR 285 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~d~~~ 285 (436)
.....|+++.|..+|+++++.+|+....+...-...+..|.++..+...+-.....++...-|+.++. +-|..+. ++.
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q-wD~ 1536 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ-WDL 1536 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc-hhh
Confidence 45567999999999999999999888777877788888888888888777666655555555555442 2244432 444
Q ss_pred HHHHHH-------------HH-HHhCCCCHHHH-HHHHHHH-------HHccCchHHHHHHHHHHHH-------------
Q 013821 286 ALTYFE-------------RA-ALAAPQDSNIL-AAYACFL-------WEMEDDGEDDKAQEEHIQV------------- 330 (436)
Q Consensus 286 A~~~~~-------------~a-l~~~p~~~~~~-~~la~~~-------~~~g~~~~A~~~~~~~~~~------------- 330 (436)
-..+.- ++ +.....|..+- ..+.... ...+......+.|+-..+.
T Consensus 1537 ~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l 1616 (2382)
T KOG0890|consen 1537 LESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEEL 1616 (2382)
T ss_pred hhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433321 11 11111111111 0000000 0000000101111100000
Q ss_pred ---------------h--HHHHcCC---HHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821 331 ---------------L--PIQSKGD---LEGAEEYFSRAILA---N----PGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 331 ---------------~--~~~~~g~---~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~d~~eA~~~~~~ 383 (436)
| -+...+. ..+-+-.+++++.. + ..-++.|...|++....|+ ++.|..++-.
T Consensus 1617 ~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~-~q~A~nall~ 1695 (2382)
T KOG0890|consen 1617 KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH-LQRAQNALLN 1695 (2382)
T ss_pred hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc-HHHHHHHHHh
Confidence 1 1111111 23333344444322 3 2347899999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
|.+..+ +.++...|+.+|.+|+...|+.++++.+...
T Consensus 1696 A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1696 AKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 988874 5889999999999999999999999999764
No 312
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.44 E-value=0.058 Score=53.93 Aligned_cols=89 Identities=28% Similarity=0.268 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK---KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
+....|+..|.++++..|+....+.+++.++.+ .|+.-.|+.....|+.++|....+|+.|+.++..+++ +.+|+.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHhhh
Confidence 677889999999999999999999999998886 5677788888999999999999999999999999987 999999
Q ss_pred HHHHHHHhCCCCH
Q 013821 289 YFERAALAAPQDS 301 (436)
Q Consensus 289 ~~~~al~~~p~~~ 301 (436)
+...+....|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 9988888888544
No 313
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.38 E-value=0.029 Score=32.71 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
++..+|.++..+++ +++|+..+++++++.|.
T Consensus 3 ~~~~~a~~~~~~~~-~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGD-YDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHccCCC
Confidence 45555555555555 56666666655555543
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.37 E-value=0.028 Score=50.39 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=54.1
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD 265 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (436)
...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566899999999999999999999999999999999999999999999999999986
No 315
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=1.4 Score=44.93 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=101.2
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC--------
Q 013821 245 KGDLYRAEDYYNHATMA------------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA-----APQ-------- 299 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-----~p~-------- 299 (436)
...|++|...|.-+... .|-+...+..++.++..++ |.+.|....+++|=. .|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qg-D~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQG-DREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 44577777777777664 2444667777777755554 577777777777632 121
Q ss_pred --------CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Q 013821 300 --------DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKLVWEL 370 (436)
Q Consensus 300 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 370 (436)
+-..+..+-... ..+.+.|-|..|.++++-.+.++|. ++-+...+...|.-.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m-------------------~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYM-------------------QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred cCcccchhhHHHHHHHHHHH-------------------HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 111111111000 5667889999999999999999998 887777777666655
Q ss_pred cCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCC
Q 013821 371 HHDHDKALCYFERA-----VQASPADSHVLAAYACFLWETEE---DEDDSKSSDQFQQVAP 423 (436)
Q Consensus 371 g~d~~eA~~~~~~a-----l~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~l~p 423 (436)
.++|+=-+..++.. +..-|+.+. -..+|.+|..... -..|...+.+|+.+.|
T Consensus 391 areYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 391 AREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 55476666666655 334465443 2456666766665 4568888888888766
No 316
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.28 E-value=0.43 Score=49.81 Aligned_cols=161 Identities=16% Similarity=0.084 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH------HHHh----CCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNH------ATMA----DPGD-GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~------al~~----~p~~-~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
|-.-|.+|.+..++++|+++|++ ++++ .|.. ...--.+|.-+...++ ++.|+..|-.+-.+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q-~daainhfiea~~~------- 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ-LDAAINHFIEANCL------- 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh-HHHHHHHHHHhhhH-------
Confidence 33445555566666677666654 2332 2221 1222334544455543 66666666443211
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHH-----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013821 304 LAAYACFLWEMEDDGEDDKAQEEHIQV-----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
..-.........+.+|+.+++..-.+ .-|...|+|+.|.+.|.++-. ...-...|.+.|+
T Consensus 736 -~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~k 806 (1636)
T KOG3616|consen 736 -IKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGK 806 (1636)
T ss_pred -HHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhcccc
Confidence 11112222333444444444321111 456667777777777765421 1122234455566
Q ss_pred CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCChHHHHHHH
Q 013821 373 DHDKALCYFERAVQASPADS-HVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 373 d~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~ 415 (436)
|.+|.++-++.. .|+.. ..|...+.-+-+.|++.+|.+.|
T Consensus 807 -w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 807 -WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred -HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 766665554432 23322 23344444455555555554443
No 317
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.26 E-value=2.9 Score=39.90 Aligned_cols=175 Identities=11% Similarity=-0.017 Sum_probs=101.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHH
Q 013821 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKA 323 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 323 (436)
+..+..+-+.....|++++|+.+.++..++.--.. -..+|.+.++++++...... +..+.....|...+|..-
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~---Ti~~AE~l~k~ALka~e~~y----r~sqq~qh~~~~~da~~r 268 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEEAT---TIVDAERLFKQALKAGETIY----RQSQQCQHQSPQHEAQLR 268 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh---hHHHHHHHHHHHHHHHHHHH----hhHHHHhhhccchhhhhh
Confidence 33445556677778999999999999988854332 27889999999988643221 111112222222222211
Q ss_pred ----HHHHHHH---hHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Q 013821 324 ----QEEHIQV---LPIQSKGDLEGAEEYFSRAILANPGD--GEIMSQYAKLVWELHHDHDKALCYFERAVQAS-PADSH 393 (436)
Q Consensus 324 ----~~~~~~~---~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-p~~~~ 393 (436)
+.-|+++ .+..++|+..+|++.++...+-.|-. ..++-+|-.++..+.- |.+....+.+.-.+. |....
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA-YADvqavLakYDdislPkSA~ 347 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA-YADVQAVLAKYDDISLPKSAA 347 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccCcchHH
Confidence 1123333 77888999999999999988877732 2345566666666555 555554444433322 33332
Q ss_pred HHHHHHHH-------------HHHCCC---hHHHHHHHHHHHhhCCCCh
Q 013821 394 VLAAYACF-------------LWETEE---DEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 394 ~~~~la~~-------------~~~~g~---~~eA~~~~~~al~l~p~~~ 426 (436)
+.+.-+.+ -.+.|- ...|++...++.+.+|+-+
T Consensus 348 icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 348 ICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCc
Confidence 22222211 111111 2347888899999888754
No 318
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=95.18 E-value=0.82 Score=43.54 Aligned_cols=188 Identities=16% Similarity=0.068 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
--++|+.+=+-.+.+-|..++++-.++.+.++..+...=...=-..+-+...+...|. ..- .+++...+.+
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~--------r~l-I~eg~all~r 281 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWD--------RAL-IDEGLALLDR 281 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhh--------HHH-HHHHHHHHHH
Confidence 3467888777778888888888777776665433221110000001111222333222 111 5777888888
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013821 293 AALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 293 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (436)
++... |.-......++.+... .-....-+|..-..+|.-...+.|. +.+-.|.+.++.+..
T Consensus 282 A~~~~~pGPYqlqAAIaa~HA~-----------------a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~ 343 (415)
T COG4941 282 ALASRRPGPYQLQAAIAALHAR-----------------ARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMRE 343 (415)
T ss_pred HHHcCCCChHHHHHHHHHHHHh-----------------hcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhh
Confidence 87665 4444444444422222 1122346788888888888888877 667777777777766
Q ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821 372 HDHDKALCYFERAVQA--SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 372 ~d~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~ 428 (436)
. .+.++...+..... -......+...|.++.++|+.++|...|.+++.+.++-.+.
T Consensus 344 G-p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 344 G-PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred h-HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 6 78888877766554 23345677889999999999999999999999998775543
No 319
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.09 E-value=0.72 Score=46.66 Aligned_cols=170 Identities=17% Similarity=0.037 Sum_probs=93.2
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPCH-PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRAL 287 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~ 287 (436)
...++++++..+.+.. ++-|.- .......+..+.++|-++.|+.+. .++...+.|| .+.|+ ++.|.
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~-L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGN-LDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT--HHHHH
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCC-HHHHH
Confidence 3457788876666411 111222 344667778888899888888764 3556666666 45553 66666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 288 TYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 288 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
+..+ ..++...|..|| .....+|+++-|+++|+++- -+..|..+|
T Consensus 339 ~~a~-----~~~~~~~W~~Lg----------------------~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy 383 (443)
T PF04053_consen 339 EIAK-----ELDDPEKWKQLG----------------------DEALRQGNIELAEECYQKAK--------DFSGLLLLY 383 (443)
T ss_dssp HHCC-----CCSTHHHHHHHH----------------------HHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred HHHH-----hcCcHHHHHHHH----------------------HHHHHcCCHHHHHHHHHhhc--------CccccHHHH
Confidence 5433 234788999999 78888899999999988862 334455566
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhhcC
Q 013821 368 WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVYA 436 (436)
Q Consensus 368 ~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~a~~ya 436 (436)
.-.|+ .+.-.++...+.... + +...-.+++.+|+.++.++.+.++= .+++++..|..|+
T Consensus 384 ~~~g~-~~~L~kl~~~a~~~~-~----~n~af~~~~~lgd~~~cv~lL~~~~----~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 384 SSTGD-REKLSKLAKIAEERG-D----INIAFQAALLLGDVEECVDLLIETG----RLPEAALFARTYG 442 (443)
T ss_dssp HHCT--HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHHHHTT-----HHHHHHHHHHTT
T ss_pred HHhCC-HHHHHHHHHHHHHcc-C----HHHHHHHHHHcCCHHHHHHHHHHcC----CchHHHHHHHhcC
Confidence 66777 444444444333322 2 1222234555677777766555432 2355555665553
No 320
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.07 E-value=0.048 Score=51.09 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=49.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 221 YKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 221 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
|.++....|+++..|..++....+.|-|.+--..|.++++.+|.+++.|..-+..-+....++..+...|.+++..+|+.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 33444445566666666666666666666666666666666666666665533333333334666666666666666666
Q ss_pred HHHHHHH
Q 013821 301 SNILAAY 307 (436)
Q Consensus 301 ~~~~~~l 307 (436)
+..|..+
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 6665443
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.03 E-value=0.37 Score=47.94 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=87.8
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALT 288 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~ 288 (436)
...|+...|-.-+..++...|.++......+.+....|+|+.|...+.-+-..-..-..+...+-.-++.+++ +++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r-~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR-WREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh-HHHHHH
Confidence 3457777777778888888888888778888888888888888877766655544433444444445566665 777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 289 YFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 289 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.-.-.+.-.-.++++...-+ ......|-++++..++++.+.++|....
T Consensus 379 ~a~~~l~~eie~~ei~~iaa----------------------~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAA----------------------GSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHhccccCChhheeeec----------------------ccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 66666655555555544333 4455678889999999999999876433
No 322
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=2.7 Score=40.27 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------------
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALA----AP--QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------- 330 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------- 330 (436)
.+..+|+..++ |.+|+......+.- +. .-.+++..-..++..+.+..+|...+..+-..
T Consensus 133 rli~Ly~d~~~-YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 133 RLIRLYNDTKR-YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHhhHH-HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 35555555554 77776666555432 11 12333444455566666666665555432222
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCC---CCHHHH---HHHHHHHHHhcCCHHHHHHHH--HHHHHhCCCCHHHHHH
Q 013821 331 -----LPIQSKGDLEGAEEYFSRAILANP---GDGEIM---SQYAKLVWELHHDHDKALCYF--ERAVQASPADSHVLAA 397 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~---~~la~~~~~~g~d~~eA~~~~--~~al~~~p~~~~~~~~ 397 (436)
.++....+|.-|..+|-+|++-.. ++..+. -++-.+-..++. .++-...+ +.+++....+..+...
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~-~ddv~~lls~K~~l~y~g~~i~Amka 290 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL-PDDVAALLSAKLALKYAGRDIDAMKA 290 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC-HHHHHHHHhhHHHHhccCcchHHHHH
Confidence 555555888888888888887632 223333 333334445555 55544443 3456666666778888
Q ss_pred HHHHHHH--CCChHHHHHHHHHHHhhCCC
Q 013821 398 YACFLWE--TEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 398 la~~~~~--~g~~~eA~~~~~~al~l~p~ 424 (436)
++.++.+ +.+|+.|+..|++-+..+|.
T Consensus 291 vAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 291 VAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 8877654 45788888888887777664
No 323
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.01 E-value=1.5 Score=35.36 Aligned_cols=90 Identities=19% Similarity=0.121 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH
Q 013821 282 DQHRALTYFERAALAAPQ------------DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRA 349 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 349 (436)
-|++|...++++++.... +...+..|+..+..+|++++++... +.|+.+|.+-
T Consensus 24 ~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA---------------~~aL~YFNRR 88 (144)
T PF12968_consen 24 AYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA---------------DRALRYFNRR 88 (144)
T ss_dssp -HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH---------------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH---------------HHHHHHHhhc
Confidence 366777777777665421 2334455664444444333332221 2334444444
Q ss_pred HHhCCCCHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 350 ILANPGDGEI----MSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 350 l~~~p~~~~~----~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
=+++.+.... .++.+.++..+|+ .++|+..|+.+.+.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr-~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGR-KEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence 4556665544 4678888999999 99999999998753
No 324
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.92 E-value=0.052 Score=48.75 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=55.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+ ++.|.+.|++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~-~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE-FDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc-HHHHHHHHHHHHcCCcccc
Confidence 34567999999999999999999999999999999999999 9999999999999999865
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.87 E-value=0.19 Score=45.54 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=66.2
Q ss_pred HcCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHhCC--C----CHHH
Q 013821 335 SKGDLEGAEEYFSRAILAN----PG---DGEIMSQYAKLVWELHHDHD-------KALCYFERAVQASP--A----DSHV 394 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~d~~-------eA~~~~~~al~~~p--~----~~~~ 394 (436)
....+++|++.|.-|+-.. .. -+..+..+|++|..+|+ .+ .|+..|+++++... . ...+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~-~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD-EENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 3567888888888887541 12 25678889999998888 44 45555555554432 2 2367
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 395 LAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 395 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
.+.+|.+..+.|++++|.++|.+++...-...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 88999999999999999999999998754333
No 326
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.81 E-value=0.11 Score=52.06 Aligned_cols=51 Identities=22% Similarity=0.032 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p 389 (436)
+.-.|+.....|++++|....+|+.|+.++.++++ +.+|+.+...+....|
T Consensus 426 d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 426 DSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEALSCHWALQMSFP 476 (758)
T ss_pred cHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHhhhhHHHHhhcCc
Confidence 44444444455555555555555555555555555 5555554444444444
No 327
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.64 E-value=2.7 Score=38.78 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHH-CCChHHHHHHHHHHHhh
Q 013821 374 HDKALCYFERAVQ-----ASPADS---HVLAAYACFLWE-TEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 374 ~~eA~~~~~~al~-----~~p~~~---~~~~~la~~~~~-~g~~~eA~~~~~~al~l 421 (436)
.++|...|++|++ +.|.++ ....+++.+|+. +|+.++|++..++++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3677778888775 457776 344556666544 78999998888777653
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.62 E-value=0.19 Score=49.88 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHH
Q 013821 281 RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 281 ~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~ 348 (436)
||...|-.-+..++...|.++......+.+...+|.++.+.+.+...-.. +.....|++++|.....-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence 46888888888999999999998888897777777777666665533222 445566777777766666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 349 AILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
.+...-+++++...-+-...++|- ++++..++++.+.++|...
T Consensus 383 ~l~~eie~~ei~~iaa~sa~~l~~-~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 383 MLSNEIEDEEVLTVAAGSADALQL-FDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HhccccCChhheeeecccHHHHhH-HHHHHHHHHHHhccCChhc
Confidence 666555666666555555566666 7777777777777766533
No 329
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=2.2 Score=41.94 Aligned_cols=172 Identities=14% Similarity=0.117 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK------------KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
.++++.=.+.+..+|+...+|...=.++.. +.-.++-+.+...+++.+|+.-.+|+.+..++.+....
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 467777777788888877666554443332 22356678888899999999999999999998877654
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 283 -QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 283 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+..-++..+++++.+|.+..+|...=.+... +-.......+=+++..+++..++.|-.+|.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~------------------~~~~~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ------------------AERSRNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHH------------------HhcccccchhHHHHHHHHHhccchhhhHHH
Confidence 7899999999999999998888654422211 111122356667888999999999999999
Q ss_pred HHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 362 QYAKLVWELHHD-----------HDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 362 ~la~~~~~~g~d-----------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
+...++-.+-.+ ...-+..-..|+=.+|++..+|+..-+++-+
T Consensus 188 yRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 188 YRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 988887632110 2334455566777789998888775555443
No 330
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=3.2 Score=42.97 Aligned_cols=90 Identities=8% Similarity=0.067 Sum_probs=77.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.-.++..+|..++++|...+..-|.+ .....+++.||..+.+ .+.|.++++.|-+.+|.++-....+..+...
T Consensus 362 ~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 362 KKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 56778899999999999999887654 4567889999999999 9999999999999999998888888888888
Q ss_pred CCChHHHHHHHHHHHhh
Q 013821 405 TEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 405 ~g~~~eA~~~~~~al~l 421 (436)
.|.-++|+.........
T Consensus 441 E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKSS 457 (872)
T ss_pred hcchHHHHHHHHHHHhh
Confidence 89999998887766654
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.53 E-value=0.72 Score=38.83 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=66.1
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEED 408 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 408 (436)
..-...++.+++...+...--+.|+.+++-..-|+++...|+ |.+|+..|+...+-.+..+.....++.|+.-+|+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~-w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGN-YDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCC-HHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 445568899999999988888899999999999999999999 99999999998888877787777788887777765
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.51 E-value=0.51 Score=41.43 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG---DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAY 307 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~l 307 (436)
.++..+|..|.+.|++++|++.|.++...... -.+.++.+..+....+ |+.....++.++-..-.. +....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~~~d~~~~--- 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEKGGDWERR--- 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccchHHHH---
Confidence 56667777777777777777777776665433 2345555666656665 477777777776554322 22211
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013821 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
..+-...| ..+...++|.+|.+.|-.++...
T Consensus 113 nrlk~~~g---------------L~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEG---------------LANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHH---------------HHHHHhchHHHHHHHHHccCcCC
Confidence 11111111 66667889999998887765443
No 333
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=6 Score=40.61 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Q 013821 211 FDDSAEAEEYYKRMIDE------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA----------------- 261 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 261 (436)
...|++|...|.-++.. .|-+.+.+..++.++..+|+.+-|....++++-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45688899888888875 3567788999999999999998887777777542
Q ss_pred ----CCCCHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHH
Q 013821 262 ----DPGDGESWMQ---YAKLVWELHRDQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPI 333 (436)
Q Consensus 262 ----~p~~~~~~~~---la~~~~~~~~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (436)
.|.+...|.. .-..+... |-+..|.++++-.+.++|. |+.....+..+| .
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~R-GC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~---------------------A 388 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQR-GCWRTALEWCKLLLSLDPSEDPLGILYLIDIY---------------------A 388 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCcCCchhHHHHHHHH---------------------H
Confidence 2333333322 22222333 3589999999999999998 887766665433 2
Q ss_pred HHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCC
Q 013821 334 QSKGDLEGAEEYFSRAIL-----ANPGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASP 389 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p 389 (436)
.+..+|+=-++.++..-. .-|+. ..-..+|..|..... +-+.|...+.+|+...|
T Consensus 389 LrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 389 LRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 344555555555555422 23332 222334444444333 13567777777777666
No 334
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.21 E-value=0.49 Score=52.59 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=108.7
Q ss_pred HHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821 216 EAEEYYK-RMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 216 ~A~~~~~-~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
+++.++. ..-...|+....|..++.++...|++++|+.+-.++.-+ .|+....+.+++...+.... ...|
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~-~~~a 1034 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN-LSGA 1034 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC-ccch
Confidence 3344666 444568889999999999999999999999998887644 34556778888877676664 8889
Q ss_pred HHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC----
Q 013821 287 LTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP---- 354 (436)
Q Consensus 287 ~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---- 354 (436)
+..+.++..+. |.-.....++. .++...++++.|+.+.+.|+..+.
T Consensus 1035 l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle----------------------~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1035 LKSLNRALKLKLLSSGEDHPPTALSFINLE----------------------LLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred hhhHHHHHHhhccccCCCCCchhhhhhHHH----------------------HHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99888887763 33344445666 666677899999999999988642
Q ss_pred ----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 355 ----GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 355 ----~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
.....+..++++...+++ +..|+...+..+.+
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~~d-fr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKD-FRNALEHEKVTYGI 1128 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhhHH-HHHHHHHHhhHHHH
Confidence 234566677777777777 77777777766544
No 335
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.19 E-value=0.11 Score=48.71 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-H
Q 013821 286 ALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQY-A 364 (436)
Q Consensus 286 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a 364 (436)
-+-.|.++....|+++..|..++ ....+.|-|.+--..|.+++..+|.+++.|..- +
T Consensus 92 ~~f~~~R~tnkff~D~k~w~~y~----------------------~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~ 149 (435)
T COG5191 92 KIFELYRSTNKFFNDPKIWSQYA----------------------AYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCA 149 (435)
T ss_pred eeEeeehhhhcCCCCcHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeecc
Confidence 33455666667789999999888 556667788888999999999999999999874 4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 365 KLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 365 ~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.-+...++ ++.+..+|.+++..+|+.+.+|..+-.+
T Consensus 150 ~e~~~~an-i~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 150 FELFEIAN-IESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred chhhhhcc-HHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 44555666 9999999999999999999888765543
No 336
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=2.2 Score=41.93 Aligned_cols=139 Identities=11% Similarity=0.073 Sum_probs=107.2
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 243 QKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHR-----------DQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 243 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
...|.+ +++++.-.+.+..+|+...+|+..-.++....- -+++-+.+...+++.+|+...+|+.+.
T Consensus 39 r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~-- 116 (421)
T KOG0529|consen 39 REAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK-- 116 (421)
T ss_pred HhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH--
Confidence 344554 567777788888899887777655444432211 256778889999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 013821 311 LWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD---HDKALCYFERAV 385 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d---~~eA~~~~~~al 385 (436)
+++.+.+ ++..=++..+++++.+|.+..+|...-.+......+ ..+-+++..+++
T Consensus 117 --------------------w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I 176 (421)
T KOG0529|consen 117 --------------------WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLI 176 (421)
T ss_pred --------------------HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHH
Confidence 5555443 478889999999999999999998887777665553 567788999999
Q ss_pred HhCCCCHHHHHHHHHHHH
Q 013821 386 QASPADSHVLAAYACFLW 403 (436)
Q Consensus 386 ~~~p~~~~~~~~la~~~~ 403 (436)
..++.+-.+|.....++.
T Consensus 177 ~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 177 NDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred hccchhhhHHHHHHHHHH
Confidence 999999999988887766
No 337
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.01 E-value=0.45 Score=41.78 Aligned_cols=98 Identities=21% Similarity=0.063 Sum_probs=72.1
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH----
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--GDGESW---- 269 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~---- 269 (436)
.++..+|..+.+.|+.++|++.|.++.+..-.. .+.++.+..+.+..+++..+..++.++-..-. .+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 678899999999999999999999988864322 37788899999999999999999999976532 333222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821 270 MQYAKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
..-|..+... ++|.+|.+.|-.++.-.
T Consensus 117 ~~~gL~~l~~-r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQ-RDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHh-chHHHHHHHHHccCcCC
Confidence 1223223333 46999988887765433
No 338
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.01 E-value=1.9 Score=45.82 Aligned_cols=204 Identities=13% Similarity=0.070 Sum_probs=127.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821 218 EEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 218 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
+..+++.++..|.-..-|..+.......|++-.-...+++++.-.+.+...|..++..+-..-+-.+.+...+-+++...
T Consensus 298 ~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c 377 (881)
T KOG0128|consen 298 LFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC 377 (881)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCC
Confidence 33455555566666677888888889999999999999999999999999999988554333332345556666666666
Q ss_pred CCCHHHHHHHHHHHHHccCch-HHHHHHHHHHHH----------------------hHHHHcCCHHHHHHHHHHHHHh-C
Q 013821 298 PQDSNILAAYACFLWEMEDDG-EDDKAQEEHIQV----------------------LPIQSKGDLEGAEEYFSRAILA-N 353 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~----------------------~~~~~~g~~~~A~~~~~~al~~-~ 353 (436)
|-...+|...-..+.+.+... .....+..++.. .+-.-...|..|..+|...... -
T Consensus 378 p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~ 457 (881)
T KOG0128|consen 378 PWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQL 457 (881)
T ss_pred chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 665555543332222222111 111111111111 1112223455566666655544 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-VLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
.....++..+|.+...+..+.+.|..++...+........ .|.....+-...|+...+..++++++..
T Consensus 458 Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 458 DTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred hhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 2235677778888877666688888888877665555444 7777777777888888888887777754
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.95 E-value=0.15 Score=32.40 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777654
No 340
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.91 E-value=0.68 Score=38.24 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 357 GEIMSQYAKLVWELHH--DHDKALCYFERAVQ-ASPAD-SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~--d~~eA~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
.+..+++++++....+ |..+.+.+++..+. ..|+. -+.++.|+..++++++|+.++.+.+..++..|+...+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 5667777777764432 36677888888776 44443 356677788888888888888888888888887776654
No 341
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.83 E-value=1.7 Score=45.39 Aligned_cols=136 Identities=16% Similarity=0.091 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
.++.++|..+..+-.|++|.++|.+.-.. -++..+++.... |++ ++.....-|++...+-.+|..+.
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~-f~~----LE~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLEL-FGE----LEVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHh-hhh----HHHHHHhcCcccchHHHHHHHHH
Confidence 44555555555555555555555443111 122333333321 222 23334445777777777787777
Q ss_pred HccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 313 EMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
..|.-++|.+.+.+.-.. .....+++|.+|++..++-- -|.-.......+.-+.+.++ .-+|++..+++
T Consensus 864 svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~-~~eaIe~~Rka 936 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADAN-HMEAIEKDRKA 936 (1189)
T ss_pred hhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcc-hHHHHHHhhhc
Confidence 777666666555422111 34445555666655443310 12212222223333444555 66777766665
No 342
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.71 E-value=0.6 Score=51.89 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=119.6
Q ss_pred HHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Q 013821 235 LRNYAQLLQKKGDLYRAED------YYNHA-TMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQ 299 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~ 299 (436)
....|......|.+.+|.+ ++.+. -.+.|.....+..++.++...+ |+++|+..-.++.-+. |+
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~-d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG-DNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc-chHHHHHhcccceeeechhccCCCHH
Confidence 4455555666666666666 55533 3357888899999999999987 5999999888876443 34
Q ss_pred CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc
Q 013821 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA--------NPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g 371 (436)
....+.+++ ...+..+....|...+.+++.+ .|.-.....+++.++...+
T Consensus 1014 t~~~y~nla----------------------l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~ 1071 (1236)
T KOG1839|consen 1014 TKLAYGNLA----------------------LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVE 1071 (1236)
T ss_pred HHHHhhHHH----------------------HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHH
Confidence 455556666 5566666777788888877765 4555667788999988888
Q ss_pred CCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 372 HDHDKALCYFERAVQASPA--------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 372 ~d~~eA~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
+ ++.|+++++.|+...-. ....+..++.+...++++..|+...+..+.+.
T Consensus 1072 e-~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1072 E-ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred H-HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence 9 99999999999986421 23566778888888888888888877776653
No 343
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=0.92 Score=46.73 Aligned_cols=94 Identities=14% Similarity=0.039 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
.++.+-|.-.++..+|..++++|...+..-|.+ +.....++.||..+.+ .+.|.++++.|-+.+|.++.....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccccHHHHHH
Confidence 345677888889999999999999999887654 5677889999999986 999999999999999999988888
Q ss_pred HHHHHHHccCchHHHHHHHHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEH 327 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~ 327 (436)
........++-++|+..+...
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHH
Confidence 776666666666666555433
No 344
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.60 E-value=6.9 Score=43.32 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=78.8
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHc----CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 206 LIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKK----GD---LYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~----g~---~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+.....|++|+..|++...-.|.-. ++.+..|..+..+ |+ +++|+.-|++. .-.|.-+--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHH
Confidence 366777889999999999999998754 7888888888753 33 56666666553 3457778888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|..++ ++++-+++|.-|++..|+++..-...-
T Consensus 562 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (932)
T PRK13184 562 YQRLG-EYNEEIKSLLLALKRYSQHPEISRLRD 593 (932)
T ss_pred HHHhh-hHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 88887 599999999999999999876544333
No 345
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.47 E-value=1.8 Score=35.85 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 231 HPLLLRNYAQLLQKKG---DLYRAEDYYNHATM-ADPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
.....+++|.++.... +..+.+..++..++ ..|. ..+..+.++.-+++.++ |++++.+.+..++..|++.++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke-Y~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE-YSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh-HHHHHHHHHHHHhhCCCcHHHHH
Confidence 3466777777777544 44567777777775 4444 45566677777777765 88888888888888888777654
Q ss_pred H
Q 013821 306 A 306 (436)
Q Consensus 306 ~ 306 (436)
.
T Consensus 110 L 110 (149)
T KOG3364|consen 110 L 110 (149)
T ss_pred H
Confidence 3
No 346
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.45 E-value=0.19 Score=31.89 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
.++.++|.+|..+|+ +++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGR-YEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh-cchhhHHHHHHHHH
Confidence 345566666666666 66666666666554
No 347
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=4.8 Score=34.93 Aligned_cols=70 Identities=10% Similarity=0.117 Sum_probs=38.4
Q ss_pred hHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAI-LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
.++...|-|++-..-.+..- ..+|--..+.-.||..-++.|+ +..|..+|.+... +..-+....+.+.+.
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd-~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD-FAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc-hHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 44555666666554443321 2234444566667777777777 7777777776655 333344444444443
No 348
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=0.83 Score=42.45 Aligned_cols=68 Identities=19% Similarity=0.049 Sum_probs=60.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la 399 (436)
..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|. +.-|+..++..++..|+++.+-....
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c-~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC-YHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC-chhhHHHHHHHHHhCCCchHHHHHHH
Confidence 778888999999999999999999999999999999999999 99999999999999999876554433
No 349
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.79 E-value=4 Score=38.43 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
..++..++..+...|+ ++.++..+++.+..+|.+-.+|..+-..|...|+...|+..|++...+
T Consensus 153 ~~~l~~lae~~~~~~~-~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGR-ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhccc-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4577778888888899 999999999999999999999999999999999999999999987764
No 350
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=7.7 Score=36.41 Aligned_cols=204 Identities=11% Similarity=-0.006 Sum_probs=110.5
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhC----C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEY----P----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGDGES 268 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~----P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 268 (436)
..+++-..+..++++|+..|.+.+... . +.......++.+|...|++..-.+......+. .|....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 445566667789999999999998752 1 12356789999999999987655544333221 1111112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013821 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
...+-..+-.....++.-+..+...++........ -++.-.+.-...++++.|.|.+|+.....
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~----------------fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRK----------------FLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 22111111111112233333333333221111110 01110011111677888999999888777
Q ss_pred HHHh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHH--HHHHHHHHHCCChHHHHHHH
Q 013821 349 AILA------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS-----PADSHVL--AAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 349 al~~------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~-----p~~~~~~--~~la~~~~~~g~~~eA~~~~ 415 (436)
.+.- .+.-..++..-..+|....+ ..++..-+..|-... |....+. ..-|.....-.+|.-|..+|
T Consensus 151 ll~ElKk~DDK~~Li~vhllESKvyh~irn-v~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF 229 (421)
T COG5159 151 LLHELKKYDDKINLITVHLLESKVYHEIRN-VSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYF 229 (421)
T ss_pred HHHHHHhhcCccceeehhhhhHHHHHHHHh-hhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHH
Confidence 6543 23445677777788888877 888777777665432 3222221 22244456667788888887
Q ss_pred HHHHhhC
Q 013821 416 DQFQQVA 422 (436)
Q Consensus 416 ~~al~l~ 422 (436)
-.+++-.
T Consensus 230 ~Ea~Egf 236 (421)
T COG5159 230 IEALEGF 236 (421)
T ss_pred HHHHhcc
Confidence 7777643
No 351
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.76 E-value=8.4 Score=35.89 Aligned_cols=175 Identities=10% Similarity=0.049 Sum_probs=103.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHc
Q 013821 245 KGDLYRAEDYYNHATMADPGDG----ESWMQYAKLVWELHRDQHRALTYFERAALAA-----PQDS-NILAAYACFLWEM 314 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~ 314 (436)
..++++|+.-|++++++.++.. .++..+..+.+.+++ |++-.+.|.+.+..- .+.. .....+-......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~-~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGN-YKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3478899999999999988754 466778888899886 999998888877542 1111 1111111111111
Q ss_pred cCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHH
Q 013821 315 EDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPG------------DGEIMSQYA 364 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la 364 (436)
.+.+--...++.-+.. .+|+..++|.+-.+.+++.-..... -.++|..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 1111112222211111 6677777777777766665443211 123444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHH----HHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 365 KLVWELHHDHDKALCYFERAVQASPAD--SHVL----AAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 365 ~~~~~~g~d~~eA~~~~~~al~~~p~~--~~~~----~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
.+|..+.+ ...-..+|++++.+...- +.+. -.=|..+.+.|++++|..-|-.|..-
T Consensus 199 QmYT~qKn-NKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 199 QMYTEQKN-NKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhhcc-cHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 56666666 677777888888765432 3222 22345577888888888777666654
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.27 E-value=6.9 Score=46.59 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=100.7
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE---YP----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
.-|.+....-....+..+-+-.+++++-. +| .-...|...|.+....|+++.|..++-.|.+.. -+.+...
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E 1707 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLE 1707 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHH
Confidence 34555554444444555666666665542 22 345899999999999999999999999988877 6788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-------HHHHHH--HHHHHHHccCchHHHHHHHHHHHHhHHHHcCC--H
Q 013821 272 YAKLVWELHRDQHRALTYFERAALAA-PQD-------SNILAA--YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD--L 339 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~-p~~-------~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~--~ 339 (436)
.|..+|..| |...|+..+++.+..+ |+. +..... .+.+....+ ......++ -
T Consensus 1708 ~AK~lW~~g-d~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~---------------~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1708 RAKLLWQTG-DELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT---------------KYLEESGNFES 1771 (2382)
T ss_pred HHHHHHhhc-cHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH---------------HHHHHhcchhH
Confidence 999999998 4999999999999765 220 111110 011111111 22223333 3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 340 EGAEEYFSRAILANPGDGEIMSQYAKLV 367 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (436)
.+-+++|+.+.++.|.....++.+|..|
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 4567889999999998777777777544
No 353
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=92.16 E-value=5.8 Score=34.74 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=73.8
Q ss_pred hhhhhhHHhhhh-hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 198 DDAGEVVDLIMP-NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-----KGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
+.+-..||..+. -+.++++|..+|+.-.+.+. .+..-+.+|..++. .+++..|++.|..+.. -+.+.+...
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~ 110 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRY 110 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhh
Confidence 344444554432 24678888888888776654 56667777776653 5678999999998876 567888888
Q ss_pred HHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 272 YAKLVWELHR------DQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 272 la~~~~~~~~------d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|.+++.-.. |..+|++++.++.++. +..+.+.|.
T Consensus 111 ~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS 151 (248)
T KOG4014|consen 111 LGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLS 151 (248)
T ss_pred hhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHH
Confidence 8888765432 3678999999987664 455556665
No 354
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.13 E-value=3 Score=34.71 Aligned_cols=32 Identities=13% Similarity=-0.011 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+.+...+.+++.++..++.++..+..+..+|.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 355
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.00 E-value=2.6 Score=41.49 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=63.3
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhC--------CC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEY--------PC-----HP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~--------P~-----~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
+...+++++|..|.--|..++++- |. +. .+-..+..||+.+++.+-|+.+..+.+.++|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 335666777777777777776642 11 11 2345678888889999999999888888999888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 267 ESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
.-+...|.|+..+.+ |.+|...+.-+
T Consensus 263 rnHLrqAavfR~LeR-y~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLER-YSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 888888888887776 77777655443
No 356
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.94 E-value=11 Score=39.32 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=39.3
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
..|..+++-....=+++-|.+.|.+.-.+ ....+ --..+|.++.-.|++.+|.+.|.+
T Consensus 586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHH
Confidence 46888888888888888888888765331 11111 124567777778888888777765
No 357
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=0.78 Score=42.63 Aligned_cols=68 Identities=16% Similarity=0.008 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.+++. +.-|++.+...++..|+++.+-.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c-~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC-YHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC-chhhHHHHHHHHHhCCCchHHHH
Confidence 333445555666666666666666666666666666666665553 56666666666666666555443
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.71 E-value=2.1 Score=31.87 Aligned_cols=57 Identities=7% Similarity=0.137 Sum_probs=40.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
++... +.++|+..++++++..++..+-+..+|.+. .+|...|+|.+++.+-.+-+++
T Consensus 16 LY~~~-~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~-------------------qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 16 LYHQN-ETQQALQKWRKALEKITDREDRFRVLGYLI-------------------QAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred Hhccc-hHHHHHHHHHHHHhhcCChHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 378888888888888888777777777655 6777778887777766555443
No 359
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.67 E-value=0.7 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCC
Q 013821 234 LLRNYAQLLQKKGDLYRAEDY--YNHATMADP 263 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p 263 (436)
.++.+|..+..+|++++|+.. |.-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 445555555556666666655 324444444
No 360
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.55 E-value=8.7 Score=33.42 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=25.5
Q ss_pred hhhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 208 MPNFDDSAEAEEYYKRMIDEYPCH--PLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
+.+.+..++|+..|...-+..-.. ..+.+..|.+..+.|+...|+.+|..+-..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 334444555555555444332211 133444555555555555555555554443
No 361
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.25 E-value=19 Score=36.70 Aligned_cols=189 Identities=7% Similarity=-0.025 Sum_probs=123.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
.|-+...+..+-.++....++.-....+.+.+... ++..+++.++.+|...+ .++-...+++.++.+=++...-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en~--n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKENG--NEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhcC--chhhHHHHHHHHHhcchhHHHHHHH
Confidence 34444556666666666666666667777777664 46678899999988873 6888999999999999999888889
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-------------------HHHHHHHHHHH
Q 013821 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-------------------EIMSQYAKLVW 368 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------~~~~~la~~~~ 368 (436)
+..|.. ++..++...+.+++... ....+...-.+...+..+.-+++. .+.+.--..++
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 877766 66777777777655431 111112222233333333333332 22222222334
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------CCChHHHHHHHHHHHhhC
Q 013821 369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE--------------------TEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 369 ~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~eA~~~~~~al~l~ 422 (436)
....|+.+|++.+...++.+..+..+..++...+.. -.++.+++.-|++.+.++
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~ 289 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFD 289 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheec
Confidence 445569999999999999999988888877777655 344556666666655543
No 362
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.66 E-value=1.1 Score=34.64 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 333 IQSKGDLEGAEEYFSRAILANPG---------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
..+.|+|.+|++.+.+.+..... ...++.++|.+....|+ +++|+..+++++.+...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~-~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH-YEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHH
Confidence 45689999998888888776332 13567889999999999 99999999999987543
No 363
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.65 E-value=1.1 Score=34.80 Aligned_cols=54 Identities=22% Similarity=0.117 Sum_probs=38.8
Q ss_pred hhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPC---------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD 262 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 262 (436)
.+.|++.+|++.+.+..+.... ...++.++|.++...|++++|+..+++++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4558889998888877764321 13556777888888888888888888887763
No 364
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=6.5 Score=38.62 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=44.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILA----NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
+.|...+.|++|.....++.-- +...+..++++|.+..-+++ |..|.++|-+|+...|.+.
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld-YssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD-YSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc-hhHHHHHHHHHHHhCcchh
Confidence 5667778888888777766411 11235567788888888888 9999999999999988743
No 365
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.41 E-value=0.91 Score=42.64 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
|+.+|.+|+.+.|.++..++.+|.+....|+ .-.|+-+|-+++-..-..+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~-~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD-DLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT--HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7899999999999999999999999999988 8999999999997765568888888888877
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.40 E-value=2 Score=31.95 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=38.1
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHH
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRN---YAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+..|.-++...+.++|+..++++++..++..+.+.. +..+|...|+|.+.+.+..+-+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677888888888888877766654444 44455667777777766544433
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.27 E-value=2.1 Score=43.33 Aligned_cols=133 Identities=17% Similarity=0.054 Sum_probs=71.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchH
Q 013821 240 QLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 319 (436)
+.....++++++....+. -++-|.-+.-+.....-|.+..|-++.|+... .|+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA----------- 328 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA----------- 328 (443)
T ss_dssp HHHHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH-----------
T ss_pred HHHHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH-----------
Confidence 344567888888777641 22334433333333333333334355554433 2345555444
Q ss_pred HHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------hCCCC
Q 013821 320 DDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ--------ASPAD 391 (436)
Q Consensus 320 A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~--------~~p~~ 391 (436)
.+.|+++.|.+..++ -++...|..||......|+ ++-|..+|+++-. .--.+
T Consensus 329 --------------l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~-~~lAe~c~~k~~d~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 329 --------------LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGN-IELAEECYQKAKDFSGLLLLYSSTGD 388 (443)
T ss_dssp --------------HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTB-HHHHHHHHHHCT-HHHHHHHHHHCT-
T ss_pred --------------HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcCccccHHHHHHhCC
Confidence 578999999876533 3578899999999999999 9999999998522 12233
Q ss_pred HHHHHHHHHHHHHCCChHHHH
Q 013821 392 SHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~eA~ 412 (436)
...+..++......|++.-|.
T Consensus 389 ~~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 389 REKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHH
Confidence 444455555555555555443
No 368
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.89 E-value=1.1 Score=42.04 Aligned_cols=62 Identities=24% Similarity=0.233 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
|+.+|.+|+.+.|.+...|..+|.++...|+.=.|+-+|-|++......+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997655567788888877665
No 369
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.67 E-value=0.46 Score=27.10 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666666554
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.63 E-value=15 Score=32.84 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHHHH
Q 013821 355 GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA----DSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 355 ~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~ 412 (436)
++++..+.||..|.+. |.++|+.++.+++++.+. +++++..|+.++.++|+++.|.
T Consensus 139 ~t~elq~aLAtyY~kr--D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTKR--DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4567777777666643 378888888888877543 3677888888888888887774
No 371
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.46 E-value=5.4 Score=39.36 Aligned_cols=90 Identities=11% Similarity=0.003 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C-----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-G-----D-----GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~-----~-----~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
+...+..+..-...|++..|++++.+...+.. . + ..+.-.+..||..+++ .+-|+..-.+.+-++|..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk-pdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK-PDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC-CchHHHHHhhhhhcCcch
Confidence 33444444444445555555555555544321 1 1 1233345666666654 666666666666666666
Q ss_pred HHHHHHHHHHHHHccCchHHHH
Q 013821 301 SNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~ 322 (436)
..-+...+.+...+.+|.+|.+
T Consensus 262 frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655544
No 372
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.22 E-value=3.8 Score=38.61 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=49.1
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
..+...|+++.+++.+++.+..+|.+...|..+-.+|...|+ ...|+..|++.-..
T Consensus 161 e~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~-~~~ai~~y~~l~~~ 216 (280)
T COG3629 161 EALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR-QSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC-chHHHHHHHHHHHH
Confidence 677778899999999999999999999999999999999998 89999998887653
No 373
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.11 E-value=3.7 Score=43.83 Aligned_cols=110 Identities=16% Similarity=0.102 Sum_probs=58.4
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCH-PLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGDGESWMQYAKLVWELHRDQH 284 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~d~~ 284 (436)
++.+...|.-|+.+.+.- ..+++. ..++..+|..++.+|++++|...|-+++.. +|...--.+ ....+ ..
T Consensus 343 iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~-Ik 414 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQR-IK 414 (933)
T ss_pred HHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHH-HH
Confidence 444555566665544332 122222 367889999999999999999999998864 332211000 11111 22
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013821 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
+=..+++...+..-.+.+-...|-.+|.++++.++-.+.+
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHH
Confidence 2233333333333334444445556666666655544433
No 374
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.89 E-value=1.6 Score=27.15 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCC
Q 013821 358 EIMSQYAKLVWELHHDHDKALCY--FERAVQASPA 390 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~--~~~al~~~p~ 390 (436)
+.++.+|..+...|+ +++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~k-y~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGK-YDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhccc
Confidence 345556666666666 6666666 3355555543
No 375
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=88.60 E-value=9 Score=39.94 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=93.0
Q ss_pred HHhhhhhCCCHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Q 013821 204 VDLIMPNFDDSAEAEEYYKRM------IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM--ADPGDGESWMQYAKL 275 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~a------l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~ 275 (436)
++.++.-.|.+.+|.++|.+. ++..- ..-.+.+++-+...|..++-....++-.+ .+-+.+.+ -|.+
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT--DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka---AAEm 712 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYT--DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA---AAEM 712 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---HHHH
Confidence 444555556666666666542 22211 01234556666666666555554444322 22222222 1223
Q ss_pred HHHHcCCHHHHHHH----------HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHH
Q 013821 276 VWELHRDQHRALTY----------FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEG 341 (436)
Q Consensus 276 ~~~~~~d~~~A~~~----------~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~ 341 (436)
+...| +.++|+.. ++-+-+++..+.+.+...+..+.....+.-|.+++...-.. .++...++|.+
T Consensus 713 LiSaG-e~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~e 791 (1081)
T KOG1538|consen 713 LISAG-EHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDE 791 (1081)
T ss_pred hhccc-chhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchH
Confidence 33333 34555442 22233344455566666666666666677777666644332 66677888988
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
|....++.-+.- +.+++-.|+.+....+ +++|.+.|-+|
T Consensus 792 AFalAe~hPe~~---~dVy~pyaqwLAE~Dr-FeEAqkAfhkA 830 (1081)
T KOG1538|consen 792 AFALAEKHPEFK---DDVYMPYAQWLAENDR-FEEAQKAFHKA 830 (1081)
T ss_pred hHhhhhhCcccc---ccccchHHHHhhhhhh-HHHHHHHHHHh
Confidence 877665533322 3577777887777777 88887777665
No 376
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.59 E-value=16 Score=32.04 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=107.7
Q ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 230 CHPLLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL-H---RDQHRALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 230 ~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~---~d~~~A~~~~~~al~~~p~~~~~~ 304 (436)
..++.-..||..+. -+.++++|..+|+.-..-+. .+...+.+|..++.- + +++..|++.|..+.. .+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 45677777887665 46788888888876654432 456667777443321 1 257899999998876 5678888
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------c
Q 013821 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----------H 371 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g 371 (436)
..++.+++.-... +.+ +..+|.+++.++-.++ +..+.++|...++.- |
T Consensus 109 ~~~gLl~~~g~~~-----------------r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g 169 (248)
T KOG4014|consen 109 RYLGLLHWNGEKD-----------------RKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEG 169 (248)
T ss_pred hhhhhhhccCcCC-----------------ccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCC
Confidence 8888666543221 223 3678888888886554 445555555544332 1
Q ss_pred ------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----CChHHHHHHHHHHHhh
Q 013821 372 ------------HDHDKALCYFERAVQASPADSHVLAAYACFLWET----EEDEDDSKSSDQFQQV 421 (436)
Q Consensus 372 ------------~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~l 421 (436)
+|.+.|.++--+|-+++ ++.+..++.+.|..- .+.++|..+-.+++++
T Consensus 170 ~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 170 KPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred CCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 22566666666665554 567777877776442 2467788888888876
No 377
>PRK12798 chemotaxis protein; Reviewed
Probab=88.59 E-value=28 Score=34.66 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=59.1
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 222 KRMIDEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 222 ~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
+..+..++. +.+.-...|...+-.|+..+|.+.+...-.. .|...-.+..|.........|..+|++.|+.+--+.|.
T Consensus 101 r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPG 180 (421)
T PRK12798 101 RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPG 180 (421)
T ss_pred HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCc
Confidence 344444432 4455566666677788888887777654322 23333344444444444445688888888888877776
Q ss_pred C---HHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821 300 D---SNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 300 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
- ..++..-..+....|+.++...+..+|+.+
T Consensus 181 TLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR 214 (421)
T PRK12798 181 TLVEEAALRRSLFIAAQLGDADKFEALARNYLRR 214 (421)
T ss_pred hHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH
Confidence 3 223333332334444444444444444443
No 378
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.39 E-value=18 Score=32.28 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC----CH
Q 013821 283 QHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG----DG 357 (436)
Q Consensus 283 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~ 357 (436)
-++|...|-++-... -++++..+.+| . |+...+.++|+..+.++|++.+. ++
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLA----------------------t-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~ 178 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALA----------------------T-YYTKRDPEKTIQLLLRALELSNPDDNFNP 178 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHH----------------------H-HHHccCHHHHHHHHHHHHHhcCCCCCCCH
Confidence 366666665543221 24677777777 3 33468999999999999999543 58
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 013821 358 EIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~ 378 (436)
+++..|+.++.++|+ ++.|-
T Consensus 179 eil~sLas~~~~~~~-~e~AY 198 (203)
T PF11207_consen 179 EILKSLASIYQKLKN-YEQAY 198 (203)
T ss_pred HHHHHHHHHHHHhcc-hhhhh
Confidence 999999999999999 98874
No 379
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.30 E-value=0.6 Score=26.60 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHCCChHHHHHHH
Q 013821 394 VLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~eA~~~~ 415 (436)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 380
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.25 E-value=22 Score=33.21 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHH-HHhcCC
Q 013821 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY----FSRAILANPGDGEIMSQYAKLV-WELHHD 373 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~-~~~g~d 373 (436)
.++..+..+|..+++.+++.+|..++ -.+.-..+... +.-..+..|...+.+...+.+. ...++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf----------l~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n- 156 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF----------LLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGN- 156 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH----------HTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTB-
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH----------HhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC-
Confidence 47899999999999999888876554 45555554443 2223345677777777666554 45677
Q ss_pred HHHHHHHHHHHHHh
Q 013821 374 HDKALCYFERAVQA 387 (436)
Q Consensus 374 ~~eA~~~~~~al~~ 387 (436)
...|...+...++.
T Consensus 157 ~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 157 LRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999887776655
No 381
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.18 E-value=14 Score=40.96 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc--CCHHHHHHHHHHHHHhCCCCH
Q 013821 283 QHRALTYFERAALAAPQD---SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK--GDLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~ 357 (436)
|++|+..|++...-.|+. .++.+..|..+.... -... ..+++|+.-|++.- -.|.-+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~ 552 (932)
T PRK13184 491 YDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKA-----------------SEQGDPRDFTQALSEFSYLH-GGVGAP 552 (932)
T ss_pred HHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHH-----------------HhcCChHHHHHHHHHHHHhc-CCCCCc
Confidence 666666666666666543 344455554433321 1111 13445555554432 223334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
--|...|.+|..+|+ +++-+++|.-|++..|.++
T Consensus 553 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 553 LEYLGKALVYQRLGE-YNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred hHHHhHHHHHHHhhh-HHHHHHHHHHHHHhcCCCC
Confidence 445555555555555 6666666666666555554
No 382
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.75 E-value=1 Score=28.44 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
++..+|.+-...++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555555555666666666555555543
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.35 E-value=9.7 Score=35.88 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=25.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~ 383 (436)
..|...|.+.+|+.+.++++.++|-+...+..+..++..+|+ --.|++.|++
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD-~is~~khyer 338 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD-EISAIKHYER 338 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc-chhhhhHHHH
Confidence 344445555555555555555555555555555555555554 3444444443
No 384
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.12 E-value=5.9 Score=35.72 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=55.1
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
-+.+.+..++|+...+.-++.+|.+......+-+.+...|+|++|...++-+-++.|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 456678999999999999999999999999999999999999999999999999999863
No 385
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.02 E-value=5.9 Score=40.87 Aligned_cols=83 Identities=17% Similarity=-0.003 Sum_probs=53.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH---
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS--------PADSHVLAAYA--- 399 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~--------p~~~~~~~~la--- 399 (436)
.+..+.|+++.|.....++ ++..-|..||.+....++ +..|.++|.++-... ..+.+.+..+|
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~-l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGE-LPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhccc-chhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHH
Confidence 5556778888776655443 556778888888888888 888888888864321 22333333333
Q ss_pred ----------HHHHHCCChHHHHHHHHHHH
Q 013821 400 ----------CFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 400 ----------~~~~~~g~~~eA~~~~~~al 419 (436)
.+++..|++++..+.+....
T Consensus 719 ~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 719 KKQGKNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HhhcccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 24677788888777665543
No 386
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.23 E-value=17 Score=33.67 Aligned_cols=80 Identities=19% Similarity=0.062 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCC
Q 013821 339 LEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETE 406 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g 406 (436)
-...++++.+|+..... -..+...+|.-|+..|+ +++|+++|+.+....... ..++..+..|+..+|
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~-~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGD-YDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34556666666655332 13466789999999999 999999999997654432 267788889999999
Q ss_pred ChHHHHHHHHHHH
Q 013821 407 EDEDDSKSSDQFQ 419 (436)
Q Consensus 407 ~~~eA~~~~~~al 419 (436)
+.++.+.+.-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9998877655443
No 387
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.78 E-value=2 Score=45.17 Aligned_cols=185 Identities=12% Similarity=0.065 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCC-CH
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG------DGESWMQYAKLVW--ELHRDQHRALTYFERAALAAPQ-DS 301 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~--~~~~d~~~A~~~~~~al~~~p~-~~ 301 (436)
.++...++-..|....+|+.-++..+..-. -|+ ...+.+.++.++- ...||-++|+...-.+++.... .+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 457777888888888899887777665433 332 1222333333332 2335678899988888887644 45
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821 302 NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~ 381 (436)
+.+..-|.+|.++--. .-|...+..+.|+++|++|++..|. ...=.+++.++...|+.++...++-
T Consensus 279 Dm~Cl~GRIYKDmF~~-------------S~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~aaG~~Fens~Elq 344 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIA-------------SNYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLRAAGEHFENSLELQ 344 (1226)
T ss_pred ceeeeechhhhhhhhc-------------cCCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHHHhhhhccchHHHH
Confidence 5555555444332100 2344557788999999999999997 3445667777777777566666655
Q ss_pred HHHHHhCC-----CCH---HHHHHHHHH---HHHCCChHHHHHHHHHHHhhC-CCChhHHh
Q 013821 382 ERAVQASP-----ADS---HVLAAYACF---LWETEEDEDDSKSSDQFQQVA-PIRQGAVT 430 (436)
Q Consensus 382 ~~al~~~p-----~~~---~~~~~la~~---~~~~g~~~eA~~~~~~al~l~-p~~~~~~~ 430 (436)
.-.+.++. ... ..|+..|.. -.-.+++.+|++.-++..++. |.+....+
T Consensus 345 ~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~ 405 (1226)
T KOG4279|consen 345 QIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKST 405 (1226)
T ss_pred HHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHH
Confidence 55555431 111 222223322 233578889998888888885 55555444
No 388
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=85.76 E-value=30 Score=32.05 Aligned_cols=56 Identities=5% Similarity=-0.066 Sum_probs=32.8
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDE-YP--CHPLLLRNYAQLLQ-KKGDLYRAEDYYNH 257 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~-~P--~~~~~~~~la~~~~-~~g~~~~A~~~~~~ 257 (436)
..++.+..+.++|++.+.+.+++++. +| -+.+-...+..+|. ..|....+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 34556666667777777777777665 33 23344555555554 35666666666554
No 389
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.51 E-value=32 Score=32.19 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=99.3
Q ss_pred HHhhhhhCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh------CCCCHHHHHH
Q 013821 204 VDLIMPNFDDSAEAEEYYKRMIDE-----YPCHPLLLRNYAQLLQKKGDLY-RAEDYYNHATMA------DPGDGESWMQ 271 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~------~p~~~~~~~~ 271 (436)
-+..+.+.|++.-|.++..-.++. .+.+.....+++.++...+.-+ +-..+.+++++- .-.++..+..
T Consensus 16 Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~ 95 (260)
T PF04190_consen 16 GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHL 95 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHH
Confidence 344566667766665555444442 2334455567776666554322 233344444432 2247899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHH
Q 013821 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILA--AYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRA 349 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 349 (436)
+|..+++.+. +.+|..+|-.. ++..... .+.......+...+..-.+.+++ ..|...++...|...+..-
T Consensus 96 ~a~~~~~e~~-~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV--L~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 96 LAEKLWKEGN-YYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEADLFIARAV--LQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp HHHHHHHTT--HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH--HHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHhhcc-HHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcchhHHHHHHH--HHHHHhcCHHHHHHHHHHH
Confidence 9999999874 99999888543 2222222 23333334455555544444554 6677889999998877666
Q ss_pred HHh----CCC----------CHHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821 350 ILA----NPG----------DGEIMSQYAKLV--WELHH--DHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 350 l~~----~p~----------~~~~~~~la~~~--~~~g~--d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
++. +|+ ....++.+-.++ .+.+. -|..-.+.|+..|+.+|.....+..+|..|+....
T Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 168 TSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 655 332 222222222221 22222 02233344444555667777888888988887554
No 390
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.40 E-value=35 Score=42.68 Aligned_cols=137 Identities=13% Similarity=0.039 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCC---HHHH
Q 013821 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD---LEGA 342 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~---~~~A 342 (436)
++.+...|..+.+.++ .++|-+.|..|++++..-..+|..+|..... ......++ -..|
T Consensus 2812 aeff~lkG~f~~kL~~-~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~-----------------~f~~e~~ni~~a~~a 2873 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGK-FEEANKAFSAAVQIDDGLGKAWAEWGKYLDN-----------------RFNKEPVNISFACNA 2873 (3550)
T ss_pred HHHHHhhhHHHHHhcC-cchhHHHHHHHHHHHhhhHHHHHHHHHHHHH-----------------HHhccCcccHHHHHH
Confidence 5677778888888875 8999999999999998889999988855443 22222222 2456
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----HHHCCChHHHHHHHHH
Q 013821 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF-----LWETEEDEDDSKSSDQ 417 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~-----~~~~g~~~eA~~~~~~ 417 (436)
+.+|-+|....- +..+.-.++.+++-+. +++|...+.+++...-....+|..+.++ ....++...+...+.+
T Consensus 2874 vsCyLqA~~~~~-~skaRk~iakvLwLls--~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~k 2950 (3550)
T KOG0889|consen 2874 VSCYLQAARLYN-SSKARKLIAKVLWLLS--FDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIK 2950 (3550)
T ss_pred HHHHHHHhcccc-chhhHHHHHHHHHHHH--hccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHH
Confidence 777777765543 3567777777777663 4556555555555443333233222222 2233444444444444
Q ss_pred HHhhCC
Q 013821 418 FQQVAP 423 (436)
Q Consensus 418 al~l~p 423 (436)
.-+..|
T Consensus 2951 ia~~yP 2956 (3550)
T KOG0889|consen 2951 IAKSYP 2956 (3550)
T ss_pred HHHhch
Confidence 444443
No 391
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.39 E-value=7.5 Score=38.68 Aligned_cols=61 Identities=8% Similarity=-0.117 Sum_probs=48.1
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMID--------EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+.+++-++..-+|||..|++.++..-- ..+-+...++..|-+|..+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788999999999998765311 1233457789999999999999999999998864
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.03 E-value=2.6 Score=24.60 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 248 LYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
++.|...|++++...|..+.+|..++
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 34444444444444444444444433
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.85 E-value=3 Score=24.35 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLL 242 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 242 (436)
|+.+.|..+|++++...|..+..|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678999999999999999999998887653
No 394
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.84 E-value=43 Score=33.16 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=84.5
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC-CHHHHH
Q 013821 206 LIMPNFDDSAEAEEYYKRMIDEY----P-----CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPG-DGESWM 270 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~----P-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~-~~~~~~ 270 (436)
..+....++.+|.++-+..+..- - -.+..|+.+..+|...|+...-...+...+.. +.. .+...+
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 34555688888888777665521 1 12466888888888899977766666655543 111 233444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI 350 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 350 (436)
.+-..|...+- |++|.+...++.- |+... -..++..++.+| .+..-+++|..|.+++-+|+
T Consensus 214 ~LLr~yL~n~l-ydqa~~lvsK~~~--pe~~s-nne~ARY~yY~G---------------rIkaiqldYssA~~~~~qa~ 274 (493)
T KOG2581|consen 214 LLLRNYLHNKL-YDQADKLVSKSVY--PEAAS-NNEWARYLYYLG---------------RIKAIQLDYSSALEYFLQAL 274 (493)
T ss_pred HHHHHHhhhHH-HHHHHHHhhcccC--ccccc-cHHHHHHHHHHh---------------hHHHhhcchhHHHHHHHHHH
Confidence 55556665553 8888887776642 22110 012333333333 78888999999999999999
Q ss_pred HhCCCCH
Q 013821 351 LANPGDG 357 (436)
Q Consensus 351 ~~~p~~~ 357 (436)
...|.+.
T Consensus 275 rkapq~~ 281 (493)
T KOG2581|consen 275 RKAPQHA 281 (493)
T ss_pred HhCcchh
Confidence 9999743
No 395
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.29 E-value=2.4 Score=26.79 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 359 IMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
++..||.+-...++ |++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~-f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENEN-FEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence 44445555555544 55555555555543
No 396
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.06 E-value=50 Score=33.24 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=20.9
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCC
Q 013821 399 ACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 399 a~~~~~~g~~~eA~~~~~~al~l~p 423 (436)
|.-+.+.|....|..+|.+++.+..
T Consensus 377 g~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 377 GHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 4668889999999999999988753
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.62 E-value=34 Score=33.95 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE--SWMQY--AKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
.....+..++..++|..|...+......-|.... .+..+ |..+|..- |+.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF-DHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 3455666677788888888888887765333222 23333 33334444 367777777766554
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.57 E-value=27 Score=34.62 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=48.1
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP--LLLRNYAQLLQ--KKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~~~~~la~~~~--~~g~~~~A~~~~~~al~~ 261 (436)
......+..+++.++|..|.+.++.++..-|... ..+..++..|. ..-++.+|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445667788899999999999999998633333 45566666554 588899999999998765
No 399
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.11 E-value=6.4 Score=37.05 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
.+...+..|...|. +.+|+.+.++++.++|-+...+..+-.++..+|+.-.+++.|++.-+
T Consensus 281 llgkva~~yle~g~-~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGK-PNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44556677788888 99999999999999999999999999999999998888888877543
No 400
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=82.11 E-value=80 Score=34.20 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=25.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 381 FERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 381 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
+++.++..|....-|..+.......|..-.-...++++..-.
T Consensus 301 ~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~ 342 (881)
T KOG0128|consen 301 FERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM 342 (881)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence 334444455545566677777777777766666666666543
No 401
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.71 E-value=20 Score=37.27 Aligned_cols=93 Identities=22% Similarity=0.121 Sum_probs=53.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Q 013821 241 LLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLW 312 (436)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~ 312 (436)
+..+.|+++.|.....+ .++..-|..||.+....++ +..|.++|.++..+. -.+.+.+..+|....
T Consensus 646 lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~-l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE-LPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc-chhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 34456666666554433 3566678888888777764 888888888875543 234444444444333
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013821 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
+.|...-|- .+|...|+++++.+.+..
T Consensus 720 ~~g~~N~AF---------~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 720 KQGKNNLAF---------LAYFLSGDYEECLELLIS 746 (794)
T ss_pred hhcccchHH---------HHHHHcCCHHHHHHHHHh
Confidence 333322111 556667777776665544
No 402
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=81.51 E-value=46 Score=32.19 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=99.5
Q ss_pred HHhhhhhCCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHH
Q 013821 204 VDLIMPNFDDSAEAEEYYKRMIDE----Y--PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGD-GESWM 270 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~----~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~ 270 (436)
+...|+..++|.+|+......+.. + +.-.+++..-..+|+...+..+|...+..|-.. .|.- +..-.
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 445788889999999888777653 2 223467777788889999999988888776543 2332 22223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH--HHH
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALAAP---QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA--EEY 345 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A--~~~ 345 (436)
.-| ++....+||.-|..+|-+|++-.. ++..+...|-..+ .+-...+..++- +-.
T Consensus 214 qSG-Ilha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMl-------------------LcKIMln~~ddv~~lls 273 (411)
T KOG1463|consen 214 QSG-ILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYML-------------------LCKIMLNLPDDVAALLS 273 (411)
T ss_pred hcc-ceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHH-------------------HHHHHhcCHHHHHHHHh
Confidence 334 333334689999999999987642 2344443332211 222233444432 223
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC
Q 013821 346 FSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~--~g~d~~eA~~~~~~al~~~p 389 (436)
-+.+++....+.+++..++.++.. +.+ |..|+..|..=+..+|
T Consensus 274 ~K~~l~y~g~~i~AmkavAeA~~nRSLkd-F~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 274 AKLALKYAGRDIDAMKAVAEAFGNRSLKD-FEKALADYKKELAEDP 318 (411)
T ss_pred hHHHHhccCcchHHHHHHHHHhcCCcHHH-HHHHHHHhHHHHhcCh
Confidence 344555555667777777776643 334 7777777776666555
No 403
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.76 E-value=42 Score=37.75 Aligned_cols=46 Identities=24% Similarity=0.112 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHH
Q 013821 302 NILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 302 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~ 347 (436)
..+..+|..+.....+++|.-+|+..-+. .+|...|+|.+|+....
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHH
Confidence 34556777777777777776655533222 45555566665554443
No 404
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.62 E-value=73 Score=32.76 Aligned_cols=192 Identities=15% Similarity=0.078 Sum_probs=115.5
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC--HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYA-KLV 276 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~ 276 (436)
-....+.++...|+.+.|+.+++..+...-. ....++.+|.++.-+.+|..|-..+......+.-..-.|..++ .|+
T Consensus 269 wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~ 348 (546)
T KOG3783|consen 269 WLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCL 348 (546)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3345566666678888899999988871111 2255778899999999999999999988877665544444444 333
Q ss_pred HHH-------cCCHHHHHHHHHHH---HHhCCCC------------------------HHH--HHHHHHHHHHccCc--h
Q 013821 277 WEL-------HRDQHRALTYFERA---ALAAPQD------------------------SNI--LAAYACFLWEMEDD--G 318 (436)
Q Consensus 277 ~~~-------~~d~~~A~~~~~~a---l~~~p~~------------------------~~~--~~~la~~~~~~g~~--~ 318 (436)
... +++-+.|-.+++.. +...|.+ ..+ ++.++.++...... .
T Consensus 349 l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~ 428 (546)
T KOG3783|consen 349 LQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKN 428 (546)
T ss_pred hccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChh
Confidence 211 11223333333222 2221111 111 12222222221111 1
Q ss_pred HHH----------------HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHhcCCHH
Q 013821 319 EDD----------------KAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN---P----GDGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 319 ~A~----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~d~~ 375 (436)
+.. ..+...+...++...|+-..|..+|+.+++.. . -.|.+++.+|.+++.+|.-..
T Consensus 429 ~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~ 508 (546)
T KOG3783|consen 429 ELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLK 508 (546)
T ss_pred hHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChH
Confidence 111 11112222288889999999999999998441 1 136799999999998877689
Q ss_pred HHHHHHHHHHHhCCCC
Q 013821 376 KALCYFERAVQASPAD 391 (436)
Q Consensus 376 eA~~~~~~al~~~p~~ 391 (436)
++..++.+|-+...++
T Consensus 509 e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 509 EARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999999998876553
No 405
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.38 E-value=2.2 Score=41.10 Aligned_cols=107 Identities=17% Similarity=0.049 Sum_probs=86.4
Q ss_pred hHHhhhhhCCCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 203 VVDLIMPNFDDSAEAEEYYKRMIDEYP-----------C--------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P-----------~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
+.|+..++.++++.|..-|.+++..-- + -...+.+++.+-...+.+..|+.....++..++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 456678888999999988888876311 1 013456678888889999999998888888888
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
....+++.++..+....+ +++|++.++.+....|++......+..+
T Consensus 307 s~tka~~Rr~~~~~~~~~-~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKN-YDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred hhCcHHHHHHhHHHhhhc-hhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 999999999999888875 9999999999999999998877666643
No 406
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=79.36 E-value=73 Score=32.03 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=26.4
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP 229 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 229 (436)
.....+|.+.+-.++|+-|...|+.+.+..-
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 4556789999999999999999999988654
No 407
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.16 E-value=30 Score=32.45 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHH
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK--------KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL--HRDQH 284 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~d~~ 284 (436)
..|++.=...+..+|..-.+|...-.+... ..-++.-+.++..+++.+|++-.+|...-.++-.. . .+.
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~-~~~ 127 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKP-SWG 127 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCc-ccc
Confidence 456777777777777766666665555543 22246678889999999999999999888776554 3 377
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
.-....++.++.|+.+...|...-.++... .-...-.++.+-.++-..++..++.|..+|...-
T Consensus 128 rEl~itkklld~DsrNyH~W~YR~~vl~~i----------------e~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~ 191 (328)
T COG5536 128 RELFITKKLLDSDSRNYHVWSYRRWVLRTI----------------EDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRY 191 (328)
T ss_pred hhHHHHHHHhcccccccceeeeEeeeeecc----------------hhhccchhHHHHHHhHHHHHhhCCCChHHHHHHH
Confidence 888889999999999988875443221110 1112223444456677778888999999988773
Q ss_pred ---HHHHHhcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 365 ---KLVWELHHD-----HDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 365 ---~~~~~~g~d-----~~eA~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
......|+= +++-+.+.-.++-.+|++..+|..+-.+.
T Consensus 192 ~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~ 237 (328)
T COG5536 192 IWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVS 237 (328)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHh
Confidence 333333330 34455666667777899887776655543
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.79 E-value=9.2 Score=33.86 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
+..+..++..++.+...| ++.++..++.++...|+.++|....+++..+.|
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445666777788888888 788899999999999999999999999999998
No 409
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.77 E-value=1e+02 Score=32.95 Aligned_cols=205 Identities=11% Similarity=0.029 Sum_probs=102.2
Q ss_pred HHhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
++.......+.+.|...+.+......-.. .++..+|.-....+...+|..++..+.....++ ..+-....+....
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~-~~~e~r~r~Al~~ 325 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST-SLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc-HHHHHHHHHHHHc
Confidence 33344455566777777776544443222 223333333333322556666666544332221 2222222222233
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------hHHHHcCCHHH---H-HHHHHHH
Q 013821 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------LPIQSKGDLEG---A-EEYFSRA 349 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~g~~~~---A-~~~~~~a 349 (436)
+ |++.+...+...-..........+.+|..+...|+.++|...+.+.... ....++|..-. . ...-...
T Consensus 326 ~-dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 326 G-DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred c-CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhh
Confidence 3 4666666665543333345566677776666666666666665543221 11111121100 0 0000000
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821 350 ILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 418 (436)
+ +. ......+..+..+|. ...|...+..++.. .+..-...++.+..+.|.++.++....++
T Consensus 405 ~---~~--~~~~~ra~~L~~~g~-~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 405 L---TQ--GPEMARVRELMYWNM-DNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred h---cc--ChHHHHHHHHHHCCC-HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0 00 123455667778888 88888888777764 23556677777888888888887766554
No 410
>PF13041 PPR_2: PPR repeat family
Probab=76.98 E-value=13 Score=24.54 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
...|..+-..+.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 345556666666666666666666666654
No 411
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.87 E-value=24 Score=37.61 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=74.0
Q ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821 210 NFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQK---------KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
+-|+-++|+...-.+++.. |-.++.+..-|.+|.. .+..+.|+++|+++.+..|..- .-.+++.++...
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aa 333 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAA 333 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHh
Confidence 4588888888888888765 3344666666666643 3456778899999988888642 223455565555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 280 HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
|..|+...+.-+-.+.+ +.++.+.|..++ +..|+.. .+-.-.++|.+|+..-+..+++.|-
T Consensus 334 G~~Fens~Elq~IgmkL-----------n~LlgrKG~lek----lq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 334 GEHFENSLELQQIGMKL-----------NSLLGRKGALEK----LQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hhhccchHHHHHHHHHH-----------HHHhhccchHHH----HHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 55555554443333332 222222222221 1222221 2233456777777777777776665
No 412
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.38 E-value=63 Score=29.70 Aligned_cols=174 Identities=12% Similarity=0.092 Sum_probs=82.5
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-LLLRNYAQLLQ-KKGDLYRAEDYYNHATMADPGDG-ESWMQYAKLVW 277 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 277 (436)
...++.+..+.|+|++.+.+.++++..+|+-. +-...+..+|. ..|....+...+........... .....+..-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 34567777888888888888888888876543 33444555553 34555555555544443322210 11111111111
Q ss_pred HHc-----CCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Q 013821 278 ELH-----RDQHRALTYFERAALAAPQDSNI----LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 278 ~~~-----~d~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 348 (436)
..- .--.+.+...+..+--...+... +...|..+...-.+. .-..+..-.++|...|++
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~------------~~~~~~~~~~~a~~aY~~ 151 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFD------------SGDEKKEAAEKALEAYEE 151 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCT------------THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccc------------cchhhHHHHHHHHHhhhh
Confidence 110 00122222222222112222222 122333332211110 000111123677888888
Q ss_pred HHHh-----CCCCHH---HHHHHHHHHHH-hcCCHHHHHHHHHHHHHh
Q 013821 349 AILA-----NPGDGE---IMSQYAKLVWE-LHHDHDKALCYFERAVQA 387 (436)
Q Consensus 349 al~~-----~p~~~~---~~~~la~~~~~-~g~d~~eA~~~~~~al~~ 387 (436)
|+.+ .|.++- ...+.+..++. +|+ .++|+...++|+..
T Consensus 152 A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~-~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 152 ALEIAKKELPPTHPLRLGLALNYSVFYYEILND-PEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHH
Confidence 8765 566653 45666666666 555 99999988888753
No 413
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.74 E-value=5.6 Score=26.04 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+.+|.+|...|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888874
No 414
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=74.67 E-value=51 Score=32.59 Aligned_cols=54 Identities=13% Similarity=-0.016 Sum_probs=40.7
Q ss_pred HHhhhhhCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 013821 204 VDLIMPNFDDSAEAEEYYKRMIDEYPC-----HPLLLRNYAQLLQ--KKGDLYRAEDYYNH 257 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~-----~~~~~~~la~~~~--~~g~~~~A~~~~~~ 257 (436)
.+..+++.++|..|...|++++...+. ....+..++.+|. ..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 445678889999999999999987542 2345666666665 57788999999986
No 415
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.46 E-value=5.8 Score=25.95 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=22.2
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 396 AAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 396 ~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
..+|.+|..+|+.+.|.+.++.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57889999999999999999988853
No 416
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.30 E-value=24 Score=29.37 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=27.0
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
-.+|.-++-.+.+....+...-++..+..+|.+|.+.|+..+|.+.+.+|.+
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3445555555555555544444566666666666666666666666666654
No 417
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=74.28 E-value=4 Score=39.32 Aligned_cols=77 Identities=8% Similarity=-0.029 Sum_probs=67.4
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
....+++.+..+.+.+..|+..-..+++.++....+++..+..+....++++|++.+..+....|.+..+...+..+
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 34556778888889999999888888888888999999999999999999999999999999999998877666654
No 418
>PF12854 PPR_1: PPR repeat
Probab=73.80 E-value=9.2 Score=23.21 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+...|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 556677777777788888887777764
No 419
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.78 E-value=17 Score=30.48 Aligned_cols=50 Identities=24% Similarity=0.213 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
-.+.....+...+..|++.-|.++.+.++..+|++..+...++.++..++
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888888888888888888888877765
No 420
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.21 E-value=73 Score=30.01 Aligned_cols=167 Identities=10% Similarity=0.024 Sum_probs=105.1
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 236 RNYAQLLQKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWE-------LHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 236 ~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
..+.....+..+| ..|++.-...+..+|..-.+|...-.+... ...-++.-+..+..+++.+|.+...|...
T Consensus 35 ~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR 114 (328)
T COG5536 35 MGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHR 114 (328)
T ss_pred HHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHH
Confidence 3444444444444 456666666777777776666655555444 11124667788899999999999998776
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhcC--CHHHHHHH
Q 013821 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSK--GDLEGAEEYFSRAILANPGDGEIMSQYAKLVW---ELHH--DHDKALCY 380 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~--d~~eA~~~ 380 (436)
- .++..- .+|..-....++.++.++.|-.+|...-.++. ..++ ++..-.++
T Consensus 115 ~----------------------~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ey 172 (328)
T COG5536 115 Q----------------------WMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEY 172 (328)
T ss_pred H----------------------HHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHh
Confidence 6 333332 56777888889999999999888877666652 1222 13444556
Q ss_pred HHHHHHhCCCCHHHHHHH---HHHHHHCCCh------HHHHHHHHHHHhhCCC
Q 013821 381 FERAVQASPADSHVLAAY---ACFLWETEED------EDDSKSSDQFQQVAPI 424 (436)
Q Consensus 381 ~~~al~~~p~~~~~~~~l---a~~~~~~g~~------~eA~~~~~~al~l~p~ 424 (436)
-..++..++.+..+|... -....+.|++ ++-+++..++.-.+|.
T Consensus 173 tt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~ 225 (328)
T COG5536 173 TTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPD 225 (328)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCcc
Confidence 666778899988888776 3334445543 3334444444444444
No 421
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=72.76 E-value=40 Score=31.80 Aligned_cols=111 Identities=9% Similarity=-0.044 Sum_probs=67.9
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCC--CHHH-HHHHHHH--HHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPC--HPLL-LRNYAQL--LQKKGDL----YRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~--~~~~-~~~la~~--~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
.+...++|++-.+.|.+..+...+ ..+. |+..... .+..... ..-.+.++.=++..|+...++..+|..+.
T Consensus 9 ~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~ 88 (277)
T PF13226_consen 9 ELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWV 88 (277)
T ss_pred HHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 455667888877777777654322 1111 1111111 1111111 13455566667778888777777776665
Q ss_pred HHcC---------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc
Q 013821 278 ELHR---------------------DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDD 317 (436)
Q Consensus 278 ~~~~---------------------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 317 (436)
...- -.+.|...+.+|++++|....+...+..+-...|..
T Consensus 89 ~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 89 HRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 4421 137899999999999999999988887666666654
No 422
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.38 E-value=1.4e+02 Score=31.95 Aligned_cols=88 Identities=9% Similarity=0.046 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 418 (436)
..+|..++..+.... .+...+-....+....++ ++.+...+...-..........+.+|.++..+|+.++|...|+++
T Consensus 295 ~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~d-w~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGD-RRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhccccc-CCcHHHHHHHHHHHHccC-HHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555544322 123333333334445666 777666666643333345567788888877888888888888887
Q ss_pred HhhCCCChhHH
Q 013821 419 QQVAPIRQGAV 429 (436)
Q Consensus 419 l~l~p~~~~~~ 429 (436)
.. ..+|.+..
T Consensus 373 a~-~~~fYG~L 382 (644)
T PRK11619 373 MQ-QRGFYPMV 382 (644)
T ss_pred hc-CCCcHHHH
Confidence 54 45565543
No 423
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=72.33 E-value=32 Score=25.42 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=16.3
Q ss_pred HHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHH
Q 013821 333 IQSKGDLEGAEEYFSRAIL-------ANPGDGEIMSQYA 364 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la 364 (436)
+...|++++|+.+|+.+++ ..|++..-.....
T Consensus 16 ~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 16 AEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 3455666666655555543 3566554333333
No 424
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.32 E-value=15 Score=32.38 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p 389 (436)
++..++.++..|+ +.++.+++.++...|+ .++|....+++..+.|
T Consensus 131 ~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~-~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRPD-PNVYQRYALALALLGD-PEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC
Confidence 3334444444443 4444444555555544 4555555555544444
No 425
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.23 E-value=14 Score=33.44 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=55.1
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
.-+.+.+..++|+...+.-++..|.+......+-.++.-.|+ |++|...++-+-++.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGd-w~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGD-WEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcch-HHHHHHHHHHHhhcCcccc
Confidence 456788999999999999999999999999999999999999 9999999999999999854
No 426
>PF12854 PPR_1: PPR repeat
Probab=71.81 E-value=10 Score=23.01 Aligned_cols=26 Identities=4% Similarity=-0.118 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821 392 SHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~eA~~~~~~ 417 (436)
...|..+...+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45566666666666666666666654
No 427
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.23 E-value=56 Score=26.75 Aligned_cols=108 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHH
Q 013821 214 SAEAEEYYKRMIDEYP---CHPLLLRNYAQLLQKK----GDLYRAEDYYNHATMADPGD---------GESWMQYAKLVW 277 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P---~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~ 277 (436)
.++-...|++.+.... +-.+.|.....-.... +.-..-...+++++.....+ ..+|..++..
T Consensus 1 ~~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~-- 78 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL-- 78 (126)
T ss_dssp -HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH--
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q 013821 278 ELHRDQHRALTYFERAALAA--PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI 350 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 350 (436)
...+.+.|+.+.... -..+..|..+| ..+...|++++|.+.|+.+|
T Consensus 79 -----~~~~~~if~~l~~~~IG~~~A~fY~~wA----------------------~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 -----SSDPREIFKFLYSKGIGTKLALFYEEWA----------------------EFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----BSHHHHHHHHHHHHTTSTTBHHHHHHHH----------------------HHHHHTT-HHHHHHHHHHHH
T ss_pred -----ccCHHHHHHHHHHcCccHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHhhC
No 428
>PF13041 PPR_2: PPR repeat family
Probab=69.70 E-value=26 Score=23.07 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
...|..+-..+.+.|+ +++|.++|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~-~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGK-FEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcC-HHHHHHHHHHHHHc
Confidence 3455666666666666 66666666666654
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.60 E-value=38 Score=31.30 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcC
Q 013821 214 SAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHR 281 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~ 281 (436)
....+++++++++..... ......+|..|+..|++++|+.+|+.+....... ..++..+..|....+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~- 232 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG- 232 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC-
Confidence 345566666666643311 2455678888888899999998888886543322 234444445555544
Q ss_pred CHHHHHHH
Q 013821 282 DQHRALTY 289 (436)
Q Consensus 282 d~~~A~~~ 289 (436)
|.+..+.+
T Consensus 233 ~~~~~l~~ 240 (247)
T PF11817_consen 233 DVEDYLTT 240 (247)
T ss_pred CHHHHHHH
Confidence 24444433
No 430
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=69.09 E-value=19 Score=29.71 Aligned_cols=84 Identities=10% Similarity=0.067 Sum_probs=56.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH---------HHHhCCCCHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER---------AVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~---------al~~~p~~~~~~~~la~~ 401 (436)
..+...+.....+.+++.++..++.++..+..+..++.+.. ..+.+..++. ++.+-.. ...|.....+
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~--~~~ll~~l~~~~~~yd~~~~~~~c~~-~~l~~~~~~l 91 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD--PQKEIERLDNKSNHYDIEKVGKLCEK-AKLYEEAVEL 91 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC--HHHHHHHHHhccccCCHHHHHHHHHH-cCcHHHHHHH
Confidence 44455688999999999999998888888888998888763 4666676662 1111111 1234455566
Q ss_pred HHHCCChHHHHHHHHH
Q 013821 402 LWETEEDEDDSKSSDQ 417 (436)
Q Consensus 402 ~~~~g~~~eA~~~~~~ 417 (436)
+.+.|++++|+..+-+
T Consensus 92 ~~k~~~~~~Al~~~l~ 107 (140)
T smart00299 92 YKKDGNFKDAIVTLIE 107 (140)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 7777777777766543
No 431
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.41 E-value=61 Score=36.54 Aligned_cols=44 Identities=18% Similarity=0.022 Sum_probs=27.5
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHH-----hHHHHcCCHHHHHHHHHH
Q 013821 305 AAYACFLWEMEDDGEDDKAQEEHIQV-----LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~g~~~~A~~~~~~ 348 (436)
..|+.-+...++.-+|.++..++... .+|.+...|++|+.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHh
Confidence 56777777777777777766655543 455555566666554433
No 432
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.10 E-value=12 Score=27.72 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=13.7
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 013821 335 SKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~ 352 (436)
..|+|++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 467888888888887765
No 433
>PRK12798 chemotaxis protein; Reviewed
Probab=67.69 E-value=1.4e+02 Score=29.90 Aligned_cols=197 Identities=14% Similarity=0.056 Sum_probs=120.3
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQL-LQKKGDLYRAEDYYNHATMADPGD--GESWMQYAK 274 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~ 274 (436)
..-...|...+-.|+-.+|.+.+...-... |...-.+..|... .....+..+|+.+|+.+--+.|.. .++-.....
T Consensus 113 d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi 192 (421)
T PRK12798 113 DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSL 192 (421)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Confidence 444555667778899999988887654432 3333444544443 456788999999999999999985 345555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-C
Q 013821 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-N 353 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~ 353 (436)
......++.+++..+-.+.+......+.+....-.+- ..+.+..+-.. ...+...+.. +
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~-------------------~~~~~~~d~~~-~~~l~~~ls~~d 252 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFV-------------------DLVVRLDDEIR-DARLVEILSFMD 252 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHH-------------------HHHHhcccccc-HHHHHHHHHhcC
Confidence 5545556799999999999888877665544333221 11112211111 1224444444 3
Q ss_pred CC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCChHHHHHHHH
Q 013821 354 PG-DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD----SHVLAAYACFLWETEEDEDDSKSSD 416 (436)
Q Consensus 354 p~-~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~ 416 (436)
|. ...+|..+++.-.-.|+ .+-|.-.-++++.+.... ..+....+....-..+++++++.+.
T Consensus 253 ~~~q~~lYL~iAR~Ali~Gk-~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 253 PERQRELYLRIARAALIDGK-TELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred chhHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 33 35677788888888888 888888888888875332 2333333334444455555554443
No 434
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.59 E-value=1.5e+02 Score=32.92 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=84.1
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH------
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEY----PCHPLLLRNYAQLLQKKGDL--YRAEDYYNHATMADPGDGE------ 267 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~------ 267 (436)
-+..|..+|...|++++|++.+.+..... +...+.+-..-..+...+.. +-..++-.=.+..+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 34556777888888888888888877733 22233333433333444443 4444444444444443210
Q ss_pred -----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013821 268 -----SWMQYAKLV--WELHRDQHRALTYFERAALAAPQ-DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339 (436)
Q Consensus 268 -----~~~~la~~~--~~~~~d~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~ 339 (436)
.-.....++ .... ..+-++.+++.++..... +...+..++..|.+.=+. .-...++-
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~-~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~--------------~~~~~~kg 650 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSK-EPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLE--------------QASTDGKG 650 (877)
T ss_pred ChhhhccCCHHHHHHHhhhh-CcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhh--------------ccCchhcc
Confidence 000111111 1222 366777788887776655 444444455444332110 00001111
Q ss_pred HHHHHH--HHHHHH---------------hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821 340 EGAEEY--FSRAIL---------------ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 340 ~~A~~~--~~~al~---------------~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~ 386 (436)
+++.+. .++... .-|. ...|...+.++.++|+ .++|+..|-.-+.
T Consensus 651 ~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~-~~l~ee~aill~rl~k-he~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 651 EEAPETTVREKLLDFLESSDLYDPQLLLERLNG-DELYEERAILLGRLGK-HEEALHIYVHELD 712 (877)
T ss_pred ccchhhhHHHHHHHHhhhhcccCcchhhhhccc-hhHHHHHHHHHhhhhh-HHHHHHHHHHHhc
Confidence 222222 122111 1122 4677788888888888 8888887766554
No 435
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=67.41 E-value=1.3e+02 Score=29.32 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=16.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
.++.+.|+.++|...|++++.+.++..+..
T Consensus 373 dlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 373 DLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 445555666666666666666555544433
No 436
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.40 E-value=77 Score=34.39 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=25.9
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE 227 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 227 (436)
...+...|..++..|++++|...|-+.+..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 366777889999999999999999998873
No 437
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.65 E-value=34 Score=28.74 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=32.0
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
.-....|++.-|.++...++..+|++.++...++.++.++|.
T Consensus 78 ~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 78 QAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 445578888899999999988999888888888888887765
No 438
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=66.47 E-value=1.3e+02 Score=29.06 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--H-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--DPGD--G-ESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~-~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
-++++++--...|+..++++.+|...+..|+|..|-.++-....+ +|+. . ..|-.+|.--. .. +|+-|++.+.
T Consensus 114 ~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL-~q-nWd~A~edL~ 191 (432)
T KOG2758|consen 114 NLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEIL-TQ-NWDGALEDLT 191 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH-Hh-hHHHHHHHHH
Confidence 344445545566888899999999999999999998876554443 3332 2 23444443222 22 4999999988
Q ss_pred HHHHh
Q 013821 292 RAALA 296 (436)
Q Consensus 292 ~al~~ 296 (436)
+.-+.
T Consensus 192 rLre~ 196 (432)
T KOG2758|consen 192 RLREY 196 (432)
T ss_pred HHHHH
Confidence 87654
No 439
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=66.43 E-value=1.1e+02 Score=28.50 Aligned_cols=167 Identities=11% Similarity=0.026 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCch----
Q 013821 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ---DSNILAAYACFLWEMEDDG---- 318 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~---- 318 (436)
-+...|+..+...+......+.+....|.++-..+ ...-..+++|.. .+|. .......+..+.|..+-..
T Consensus 63 ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~ 139 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPESLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANS 139 (289)
T ss_pred hccchhhHHHHHHhcccccchHHHHHHHHHHHhhc--chhhHHHHHHHh-cCCccccchHHHHHHHHHHHhhcccccccc
Confidence 34567888888888888888888888888877775 577778888887 5554 2223344444444433111
Q ss_pred --------HH------H-HHHHHHHHH--------hHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 013821 319 --------ED------D-KAQEEHIQV--------LPIQSKGDL--EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD 373 (436)
Q Consensus 319 --------~A------~-~~~~~~~~~--------~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d 373 (436)
.+ . ++-...+.. ...+...+. ++|+..+-..+..+ ..-.....|.++.+++.
T Consensus 140 ~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvAfVfGQl~s- 216 (289)
T KOG0567|consen 140 SPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVAFVFGQLQS- 216 (289)
T ss_pred CccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--hHHHHHHHHHHHhhccc-
Confidence 00 0 000001100 333333444 88888887777655 56777788888888865
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 374 HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 374 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
..|+..+.+.+....+++-+...-+.++-..++ +++++.+++.+.
T Consensus 217 -~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 217 -PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-EDCVEVLKEYLG 261 (289)
T ss_pred -hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-HHHHHHHHHHcC
Confidence 789999999999988888888888888877776 456666665543
No 440
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=65.82 E-value=59 Score=29.77 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=59.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH-
Q 013821 331 LPIQSKGDLEGAEEYFSRAILAN---PGD---------GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS- 392 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~---p~~---------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-----~p~~~- 392 (436)
...+..|+|+.|+++..-||+.+ |+. .+-....+......|..++-. .+.....+ -|+..
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhcCCCChHHH
Confidence 55678899999999999999985 332 123334444455555522222 12222222 24433
Q ss_pred -HHHHHHHHHHH---------HCCChHHHHHHHHHHHhhCCCChh
Q 013821 393 -HVLAAYACFLW---------ETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 393 -~~~~~la~~~~---------~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
..+...|..+. ..++...|+.++++|++++|+-..
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 45566677663 446778999999999999988654
No 441
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.44 E-value=12 Score=27.56 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=11.3
Q ss_pred cCCHHHHHHHHHHHHHh
Q 013821 245 KGDLYRAEDYYNHATMA 261 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~ 261 (436)
.|+|++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 56677777777766653
No 442
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.36 E-value=1.8e+02 Score=32.25 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATMAD----PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
+..|+.+|...|++++|++.+.+...-. +.....+- .-++++++. .+.+....+.++.+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e--------------~ii~YL~~l---~~~~~~Li~~y~~w 569 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLE--------------KIIEYLKKL---GAENLDLILEYADW 569 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHH--------------HHHHHHHHh---cccchhHHHHHhhh
Confidence 6778888888999999998888887633 22222222 222222211 11122222222222
Q ss_pred HHHccCchHHHHHHHHHHHH----------hHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh--------c
Q 013821 311 LWEMEDDGEDDKAQEEHIQV----------LPIQSKGDLEGAEEYFSRAILANPG-DGEIMSQYAKLVWEL--------H 371 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~----------~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~--------g 371 (436)
.... +.+...+++...... .-|.......-++.+++.++..+.. ....+..++..|... +
T Consensus 570 vl~~-~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~ 648 (877)
T KOG2063|consen 570 VLNK-NPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDG 648 (877)
T ss_pred hhcc-CchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchh
Confidence 1111 112222222210000 4456778888999999999988765 344455555554321 1
Q ss_pred CCHHHHHHH--HHHHHH---h----CCCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 372 HDHDKALCY--FERAVQ---A----SPAD-------SHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 372 ~d~~eA~~~--~~~al~---~----~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
+ -+++.+. .++... . +|+- ...|...+.++.++|+.++|+..|-..+.
T Consensus 649 k-g~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 649 K-GEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred c-cccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1 1234443 233222 1 2221 35677888889999999999999877765
No 443
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.30 E-value=14 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=14.6
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 013821 333 IQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~ 352 (436)
+-..|+|++|+.+|+.+++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 34678888888888887654
No 444
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=64.52 E-value=11 Score=21.53 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=11.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~a 258 (436)
..+-..|.+.|++++|.+.|++.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHH
Confidence 34444455555555555555444
No 445
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.93 E-value=1.4e+02 Score=28.33 Aligned_cols=169 Identities=13% Similarity=0.029 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHATMADP--------GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
..+|+-....+++++|+..|.+.+.... +.......++.+|...|. +..-.+.....-+. |...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~-~~~l~~~i~~sre~-------m~~f 78 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGD-YCSLGDTITSSREA-------MEDF 78 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCC-cchHHHHHHhhHHH-------HHHh
Confidence 4566677777888888888887775521 113345566666666553 43322222221111 1100
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHH
Q 013821 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG------EIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~d~~eA~~~~ 381 (436)
. ..+..++++..+. ..-.....++.-+..+...++.....- ..-..+..++++.|. |.+|+...
T Consensus 79 t--------k~k~~KiirtLie-kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~-YsdalalI 148 (421)
T COG5159 79 T--------KPKITKIIRTLIE-KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK-YSDALALI 148 (421)
T ss_pred c--------chhHHHHHHHHHH-hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHH
Confidence 0 0011111111111 111123444555555555444322211 223456667788888 88888877
Q ss_pred HHHHHh------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 382 ERAVQA------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 382 ~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
.-.+.- .+.-..++..-..+|....+..++...+..|....
T Consensus 149 n~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~A 195 (421)
T COG5159 149 NPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLA 195 (421)
T ss_pred HHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 765532 23334677777788888888888877777666663
No 446
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.71 E-value=53 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al 259 (436)
...|.-+-+.|++++|+.+|+.++
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 333444445556555555544443
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.41 E-value=1.1e+02 Score=30.71 Aligned_cols=54 Identities=11% Similarity=-0.092 Sum_probs=39.4
Q ss_pred hHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAI--------LANPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al 385 (436)
+++.-.|||..|++.++..- +..+.+..+++.+|-+|..+++ |.+|++.|...+
T Consensus 130 Rvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrR-Y~DAir~f~~iL 191 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRR-YADAIRTFSQIL 191 (404)
T ss_pred HHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 67777888888887765431 1123355678888999998888 999998888866
No 448
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.22 E-value=25 Score=25.22 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=13.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 013821 332 PIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~ 352 (436)
-+...|++++|+.+|.++++.
T Consensus 14 ~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 14 EADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 344567777777777766543
No 449
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=61.69 E-value=95 Score=25.93 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=32.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
.++..+|+-++-.+.+...++.+..+++.+..+|.+|.+.|. ..+|.+++.+|-+.
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~-~r~~~ell~~ACek 149 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGN-TREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHh
Confidence 444556666666666666665555567777777777777777 77777777776553
No 450
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.42 E-value=1.6e+02 Score=33.35 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------HccCchHH----HHHHHHHHHHhHHHH
Q 013821 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW------EMEDDGED----DKAQEEHIQVLPIQS 335 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~------~~g~~~~A----~~~~~~~~~~~~~~~ 335 (436)
+...+.+|.+|...+. ..+|+.+|.+|..-..... ++..+..... ..|+...+ ...|...+ +++.+
T Consensus 920 ~v~rfmlg~~yl~tge-~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~--rlle~ 995 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGE-PVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVV--RLLEE 995 (1480)
T ss_pred HHHHHhhheeeecCCc-hHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHH--HHHHH
Confidence 3444556666666654 6777777777765543322 3333322211 22332211 22222222 77778
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCh
Q 013821 336 KGDLEGAEEYFSRAILANPGDGE----IMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEED 408 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~ 408 (436)
-+-.+.++....+||+.-|++.. ....+=.-...+|. +-+|...+ -.+|+.. ..+..+..++++.|+.
T Consensus 996 hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh-~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 996 HNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGH-WFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred hccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhh-HHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccch
Confidence 88889999999999887655432 23333333445666 66665433 3456532 3455666667766665
Q ss_pred H
Q 013821 409 E 409 (436)
Q Consensus 409 ~ 409 (436)
+
T Consensus 1071 ~ 1071 (1480)
T KOG4521|consen 1071 E 1071 (1480)
T ss_pred H
Confidence 4
No 451
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=60.90 E-value=20 Score=21.66 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 374 HDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 374 ~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
++.|..+|++.+...|+ +..|..+|.+
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 56677777777777665 5566655543
No 452
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=59.64 E-value=3 Score=43.43 Aligned_cols=111 Identities=14% Similarity=-0.032 Sum_probs=0.0
Q ss_pred hHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHH--hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 182 PPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMID--EYPC-HPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
+..|+.++-...+..........+..+...|++..|..++.+.-. +.|. ........|.+....|++++|+..+...
T Consensus 8 A~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~ 87 (536)
T PF04348_consen 8 AEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQ 87 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC
Confidence 345555555444422223334445577788999999999887762 3332 3356677788888999999999988741
Q ss_pred --HHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 259 --TMADPG-DGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 259 --l~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
..+.+. ....+..++.++...+. +-+|...+-++
T Consensus 88 ~~~~l~~~~~~~~~~l~A~a~~~~~~-~l~Aa~~~i~l 124 (536)
T PF04348_consen 88 DLWQLPPEQQARYHQLRAQAYEQQGD-PLAAARERIAL 124 (536)
T ss_dssp --------------------------------------
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 122222 23344556666666653 66665554443
No 453
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=59.49 E-value=48 Score=32.60 Aligned_cols=47 Identities=15% Similarity=0.059 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
...-+|+.+++.++...|.+......+..+|...|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34568899999999999999999999999999999999999998754
No 454
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=59.04 E-value=23 Score=20.58 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
|..+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455556666666666666665543
No 455
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=58.76 E-value=68 Score=33.59 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=30.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~ 382 (436)
..+...+..++|-.+|++.+..+|+ +.++.++.-+...|- ...|...++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~ 98 (578)
T PRK15490 50 EFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGL-AKDAQLILK 98 (578)
T ss_pred hhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhh-hhHHHHHHH
Confidence 4444556666666677776666666 556666666666666 566655555
No 456
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=55.75 E-value=1.5e+02 Score=26.44 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHh
Q 013821 339 LEGAEEYFSRAILANP--GDGEIMSQYAKLVWEL 370 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~ 370 (436)
+++.++-+.+.+-.-| ++++.|+..|.|+...
T Consensus 158 ~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~ 191 (199)
T PF04090_consen 158 YQQLIERIDELVLSPPYMDDGELWFIRGMCHLWI 191 (199)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence 4444444555444444 5677777777776654
No 457
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=55.74 E-value=32 Score=36.79 Aligned_cols=115 Identities=16% Similarity=0.099 Sum_probs=86.8
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH--cCCHHHHHHH
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQK--KGDLYRAEDY 254 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~--~g~~~~A~~~ 254 (436)
++..++.++...... |++++..+++..|.--|..++.+-|.+ .....+.+.++.. .|+|..++.-
T Consensus 45 di~v~l~ra~~~~~E---------~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E 115 (748)
T KOG4151|consen 45 DIEVFLSRALELKEE---------GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPE 115 (748)
T ss_pred chHHHHHHHHHHHhh---------hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCc
Confidence 566667777666553 678888888888887788888777632 3445566666654 6788888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
..-++...|....++...+.+|...++ ++-|++.+.-.....|.+..+..
T Consensus 116 ~~la~~~~p~i~~~Ll~r~~~y~al~k-~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 116 CELALESQPRISKALLKRARKYEALNK-LDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred hhhhhhccchHHHHHhhhhhHHHHHHH-HHHHHHHHHHHhcCCCCcchHHH
Confidence 888888899888888888888888876 88888887777778888855444
No 458
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=55.53 E-value=15 Score=33.55 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=55.9
Q ss_pred hhhhCCCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHcCCHHHH--HHHHHHHHHh--CCCC--HHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEY---PCH---------PLLLRNYAQLLQKKGDLYRA--EDYYNHATMA--DPGD--GES 268 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~---P~~---------~~~~~~la~~~~~~g~~~~A--~~~~~~al~~--~p~~--~~~ 268 (436)
..+..|+++.|+++.+.+|+.+ |+. ++-....+......|+.-+. ...+...... -|+. +..
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 4577899999999999999976 322 12233445555556653211 1122222211 2332 344
Q ss_pred HHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCC
Q 013821 269 WMQYAKLVWE--------LHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 269 ~~~la~~~~~--------~~~d~~~A~~~~~~al~~~p~~ 300 (436)
+...|..+.. ..++...|+.++++|++++|+.
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 5556665532 1235789999999999999873
No 459
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=54.69 E-value=4.1 Score=42.47 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 216 EAEEYYKRMIDEYPC-HPLLLRNYAQLLQKKGDLYRAEDYYNHAT--MADPG-DGESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 216 ~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
.|..++.++-...+. -...++.-+..+...|++..|...+.+.- .+.+. ........|.+....+ ++++|+..+.
T Consensus 7 aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~-~~~~Al~~L~ 85 (536)
T PF04348_consen 7 AAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQG-DPEQALSLLN 85 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcC-CHHHHHHHhc
Confidence 344455555554443 33566777889999999999999999876 34444 3445556677766666 4999999887
Q ss_pred H
Q 013821 292 R 292 (436)
Q Consensus 292 ~ 292 (436)
.
T Consensus 86 ~ 86 (536)
T PF04348_consen 86 A 86 (536)
T ss_dssp -
T ss_pred c
Confidence 4
No 460
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.92 E-value=1.1e+02 Score=29.59 Aligned_cols=97 Identities=10% Similarity=-0.036 Sum_probs=54.0
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE---SW 269 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~ 269 (436)
.+|.+++..|++.|+-+.|++.+.+..+..- +-.-....+|.+|....-..+-++..+..++...+ .+ -+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD-WeRrNRl 183 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD-WERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC-hhhhhhH
Confidence 5788888888999999988888887766432 11233455666665544444444444444443322 11 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 270 MQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 270 ~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
..+-.+|...-++|.+|...|-.++.-
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 111112333334578888777766643
No 461
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=53.67 E-value=2e+02 Score=27.18 Aligned_cols=134 Identities=12% Similarity=0.034 Sum_probs=75.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 239 AQLLQKKGDLYRAEDYYNHATMADPG--DGESWMQYAKL---VWELHRDQ---HRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~---~~~~~~d~---~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
...+...++|++=.+.+.+..+.... ..+..+..+.. ++...... ..-...++.-++..|+...++..+|.+
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34567788998888888888754322 11111111111 11111101 135677777788999999999999877
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013821 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
+....-.-+........-......-..-.+.|...+.+|++++|....+...+-.+-...|.
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 66543111000000000000111222335677888888888888888888777777777777
No 462
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=53.34 E-value=75 Score=31.23 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
.-+|+..++.++...|.+......+..+|..+|-.+.|..++.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5789999999999999999999999988888888888888776
No 463
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=53.14 E-value=40 Score=19.55 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.|..+..++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555666666666666666665544
No 464
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.19 E-value=2.5e+02 Score=27.87 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C---HHHHHHHH--HHHHHHcCCHHHHHHHHHH
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHATMADPG--D---GESWMQYA--KLVWELHRDQHRALTYFER 292 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--~---~~~~~~la--~~~~~~~~d~~~A~~~~~~ 292 (436)
..++..++..++|..|...|..++...+. . ...+..+. ..+|..- ++++|.+++++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRF-EHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHcc-CHHHHHHHHhh
Confidence 34566788999999999999999987542 1 23334443 4445555 48999999986
No 465
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.74 E-value=2.4e+02 Score=27.52 Aligned_cols=34 Identities=6% Similarity=-0.106 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 391 DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
++.+-+.-+.++.-.|++.++...+..++-+.|+
T Consensus 212 npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 212 NPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred hHHHHHHHHHhcccCccHhHHHHHHHHHhccCch
Confidence 3455556666666777777777777777777665
No 466
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.58 E-value=2.2e+02 Score=26.99 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=59.5
Q ss_pred hhhhCCCHHHHHHHHHHHHHhC--------CCC--HHH---HHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEY--------PCH--PLL---LRNYA-QLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~--------P~~--~~~---~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
.+.-..||..|++..+++++.- |.. .+. +.-+| +++..++++.+++.+.-+-.+.-.+-+--...+
T Consensus 44 ~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL 123 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 4444578999999999988742 111 111 22223 466789999999888777666544444444445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Q 013821 273 AKLVWELHRDQHRALTYFERAALAAPQD--SNILAAYACFLWE 313 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~ 313 (436)
-.+++..-+++....+.-..-+ .+|+| ..-+..++.+|..
T Consensus 124 CILLysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHHH
Confidence 5454544444555555444444 45543 2224444444444
No 467
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.32 E-value=15 Score=27.17 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHHh
Q 013821 212 DDSAEAEEYYKRMIDE 227 (436)
Q Consensus 212 g~~~~A~~~~~~al~~ 227 (436)
|+|++|+.+|..+++.
T Consensus 20 g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 20 GRYSEAVFYYKEAAQL 35 (76)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8888888887777663
No 468
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.99 E-value=2.2e+02 Score=26.93 Aligned_cols=83 Identities=7% Similarity=-0.027 Sum_probs=52.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHH-----HHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDG-EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS--HVLA-----AYACFL 402 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~--~~~~-----~la~~~ 402 (436)
.++..+++|.++..+..+-.+.-.+-+ +++-.-...|.+.++ +....+.-...+. +|+|. .-+. .+-.++
T Consensus 91 QALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~E-p~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 91 QALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQE-PAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHH
Confidence 667788999998888777766544433 444444455567777 7776666666665 44432 1133 344455
Q ss_pred HHCCChHHHHHHH
Q 013821 403 WETEEDEDDSKSS 415 (436)
Q Consensus 403 ~~~g~~~eA~~~~ 415 (436)
.=+|.+++|.+..
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 5679999988765
No 469
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=50.15 E-value=84 Score=32.96 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=40.8
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
......+..+-..+..++|-++|++.+.++|+ ..++.+|.-+.+.|-..+|...++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 43 LAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 44555566677777778888888888888776 566777777777777777777666
No 470
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.96 E-value=85 Score=34.60 Aligned_cols=135 Identities=16% Similarity=0.106 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
+.|+..|....+..+.-....+..+.++...+.+.+|.+.+-+....+++ +..|+-.+..++
T Consensus 241 e~a~~~~~~i~k~~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~d------------------l~~allleqaal 302 (960)
T KOG1938|consen 241 ENAFPLYRLILKNYQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGD------------------LLSALLLEQAAL 302 (960)
T ss_pred hhhhHHHHHHHhhccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCch------------------hhhHHHHHHHHH
Confidence 45666777777776666677777777887778777777766655444332 333444444443
Q ss_pred HhC---C---CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 013821 295 LAA---P---QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQ 362 (436)
Q Consensus 295 ~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 362 (436)
... | .....+.-++- ..+-..|....|+.+|..++...+.. ...++.
T Consensus 303 ~f~~tkp~m~~ktffHpVLal---------------------~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~ 361 (960)
T KOG1938|consen 303 CFGSTKPPMPRKTFFHPVLAL---------------------IRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFT 361 (960)
T ss_pred HhhcCCCCccchhhcceeehh---------------------hhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHh
Confidence 332 1 11111111110 55666777999999999999886542 234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 363 YAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 363 la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
++.+|.-.+. +.|-..+.+.+...+.
T Consensus 362 i~~~y~l~~~--D~a~~~f~~~i~~~~k 387 (960)
T KOG1938|consen 362 ILHVYLLCQE--DDADEEFSKLIADCMK 387 (960)
T ss_pred HHHhhhhhcc--hhHHHHHHHHHhhhhh
Confidence 6665544433 6777777776655443
No 471
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=49.92 E-value=82 Score=25.78 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=39.8
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---------------PLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+..+|...++.+++-.++-.|++|+.+..+- .....++|..+..+|+.+=.++|++-|-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 4566777778888888888888888643211 1224567777777777777777776553
No 472
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=49.06 E-value=2.6e+02 Score=29.80 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR----- 281 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----- 281 (436)
++.-.|+|+.|++++-+ .+.+..--..+|.++...|-+.-....-...+..++.++.. .+++.+...--+
T Consensus 267 ~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHHhcc
Q ss_pred CHHHHHHHH--------------------------------------------------HHHHHhCCCCHHHHHHHHHHH
Q 013821 282 DQHRALTYF--------------------------------------------------ERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 282 d~~~A~~~~--------------------------------------------------~~al~~~p~~~~~~~~la~~~ 311 (436)
|..+|+++| .+.+............+..+-
T Consensus 342 d~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A 421 (613)
T PF04097_consen 342 DPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAA 421 (613)
T ss_dssp -HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHH
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh---CCCC-------HHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA---NPGD-------GEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~-------~~~~~~la~~~~~~g~d~~eA~~~~ 381 (436)
.+..+...-..++ .+|.-.|+|+.+++.+.+.|.. .+.. ..-+..+|.-.... |..-...+
T Consensus 422 ~~~e~~g~~~dAi------~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~---y~~~~~~~ 492 (613)
T PF04097_consen 422 REAEERGRFEDAI------LLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILER---YKSNPHIS 492 (613)
T ss_dssp HHHHHCT-HHHHH------HHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHH---HTTSHHHH
T ss_pred HHHHHCCCHHHHH------HHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHH---HHhCcchH
Q ss_pred HHHHHhCCCCHHHHHHHHHH--HHHCCChHHHHHHHHH
Q 013821 382 ERAVQASPADSHVLAAYACF--LWETEEDEDDSKSSDQ 417 (436)
Q Consensus 382 ~~al~~~p~~~~~~~~la~~--~~~~g~~~eA~~~~~~ 417 (436)
.++-...-.-...+..+..+ ++..|++++|++.+++
T Consensus 493 ~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~ 530 (613)
T PF04097_consen 493 SKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK 530 (613)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 473
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.67 E-value=3.5e+02 Score=29.28 Aligned_cols=67 Identities=16% Similarity=0.036 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCC
Q 013821 336 KGDLEGAEEYFSRAILANPGDGE----IMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEE 407 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~ 407 (436)
..+++.......-.-+. .|+. +-..||.++...|. .+|+.+++.... +|.+. -++..++.++.++.+
T Consensus 584 ~~dp~~~~s~V~lLses--~N~HVRyGaA~ALGIaCAGtG~--~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 584 FRDPEQLPSTVSLLSES--YNPHVRYGAAMALGIACAGTGL--KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred ecChhhchHHHHHHhhh--cChhhhhhHHHHHhhhhcCCCc--HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhccc
Confidence 34555555444433332 2233 33456666666666 899999988766 66543 456666766666554
No 474
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=47.10 E-value=4.6e+02 Score=29.40 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHH
Q 013821 339 LEGAEEYFSRAILA-NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--SHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 339 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~ 415 (436)
.+.-.+.|.+.+.- +-.+..+|..-..-...+|+ |-.|++++.++++-+.+. ...+..++.++..+|.. --..+.
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~-yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~ 1289 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQ-YGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFV 1289 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHH-HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHH
Confidence 44555666666654 44556666666666677888 999999999999854432 35566688888888855 334444
Q ss_pred HHHHhh
Q 013821 416 DQFQQV 421 (436)
Q Consensus 416 ~~al~l 421 (436)
++.+.+
T Consensus 1290 ~~~~~v 1295 (1304)
T KOG1114|consen 1290 KNWMRV 1295 (1304)
T ss_pred hhheec
Confidence 554443
No 475
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=47.09 E-value=2.5e+02 Score=29.29 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 339 LEGAEEYFSRAILA-----NPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 339 ~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
-..++.+|.+|+.. +..+...|..+|-.+++.++ |.+|+..+..|
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~-~~eA~~~Wa~a 344 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKR-YREALRSWAEA 344 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHH-HHHHHHHHHHH
Confidence 34456667776654 23345567777777777777 88877766655
No 476
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=47.09 E-value=66 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
.+.|..+|+.+++..|++..++..+.
T Consensus 92 ~e~Ae~vY~el~~~~P~HLpaHla~i 117 (139)
T PF12583_consen 92 PENAEQVYEELLEAHPDHLPAHLAMI 117 (139)
T ss_dssp HHHHHHHHHHHHHH-TT-THHHHHHH
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 44455555555555555544444443
No 477
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.83 E-value=49 Score=24.72 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=11.9
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 013821 335 SKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~ 352 (436)
..|+.++|+.+|+++++.
T Consensus 20 E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 20 EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 346777777777776654
No 478
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=46.56 E-value=1e+02 Score=25.25 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCChHHHHHHHHH
Q 013821 360 MSQYAKLVWELHHDHDKALCYFERAVQASPAD---------------SHVLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~ 417 (436)
+..+|...++.++ +-.++-.|++|+.+..+- +....+||.++..+|+.+-.+++++-
T Consensus 4 htllAd~a~~~~~-~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLql 75 (140)
T PF10952_consen 4 HTLLADQAFKEAD-PLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQL 75 (140)
T ss_pred HHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHH
Confidence 3445555666666 666666666666542110 13346788888888888888877753
No 479
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.23 E-value=18 Score=27.01 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHHHH
Q 013821 212 DDSAEAEEYYKRMID 226 (436)
Q Consensus 212 g~~~~A~~~~~~al~ 226 (436)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666654
No 480
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.20 E-value=2.9e+02 Score=26.83 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
.+++.+.|..|.+.|+-+.|.+.+.+..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 488999999999999999999998887765
No 481
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.15 E-value=2.9e+02 Score=26.77 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADP--G------DGESWMQYAKLVWELHRDQHRALTYFERAA--LAAPQDSN 302 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~------~~~~~~~la~~~~~~~~d~~~A~~~~~~al--~~~p~~~~ 302 (436)
.....+|.+|.+.++|..|-..+.-. ..+. . -...+..+|++|.+.+ |..+|..+..++- ..+..+..
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~-d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDD-DKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHhhhcccCHH
Confidence 45667778888888887776655432 1211 1 1245666777777765 4777777776652 23334554
Q ss_pred HHHH
Q 013821 303 ILAA 306 (436)
Q Consensus 303 ~~~~ 306 (436)
....
T Consensus 182 Lqie 185 (399)
T KOG1497|consen 182 LQIE 185 (399)
T ss_pred HHHH
Confidence 4443
No 482
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=45.25 E-value=19 Score=33.49 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=15.6
Q ss_pred cccCCCCCCCccccccccccccccccCCCccccccCCCCC-Chhhh
Q 013821 39 TLSCSSPPTSQENCSSSLKGLRRASSDGNLKGLAHSHSSC-DIEDQ 83 (436)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (436)
+.||..|++|. -+||. ..| .+| +|++.
T Consensus 24 SgS~KgSd~Sp--------~~rr~--------~rY--~~C~dNHGi 51 (305)
T PF15290_consen 24 SGSCKGSDSSP--------TMRRS--------GRY--MSCGDNHGI 51 (305)
T ss_pred CccccCCCCCC--------CCCCC--------Cce--eecccCCCC
Confidence 44666666664 33442 456 888 66654
No 483
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.19 E-value=1.3e+02 Score=28.54 Aligned_cols=63 Identities=6% Similarity=0.006 Sum_probs=33.8
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC---HPL---LLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
.+|.++|..|.+.++.+.+.++..+.++..-. -.+ .-..+|.+|..+.=.++.++..+-.++.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 56777777777777777777766666653311 112 2234444444444444455554444444
No 484
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.64 E-value=59 Score=23.21 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=12.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 013821 238 YAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 238 la~~~~~~g~~~~A~~~~~~al 259 (436)
.|.-+-..|++++|+.+|.+++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3333444666666666555544
No 485
>PF12549 TOH_N: Tyrosine hydroxylase N terminal ; InterPro: IPR021164 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. There is a single completely conserved residue G that may be functionally important. Tyrosine hydroxylase converts L-tyrosine to L-DOPA in the catecholamine synthesis pathway. ; GO: 0004511 tyrosine 3-monooxygenase activity, 0055114 oxidation-reduction process
Probab=43.83 E-value=14 Score=20.90 Aligned_cols=11 Identities=55% Similarity=0.664 Sum_probs=8.4
Q ss_pred cccccccccCC
Q 013821 56 LKGLRRASSDG 66 (436)
Q Consensus 56 ~~~~~~~~~~~ 66 (436)
-+|+||+.|+-
T Consensus 10 ~~G~r~avse~ 20 (25)
T PF12549_consen 10 AKGFRRAVSEL 20 (25)
T ss_pred Cccchhhhhhh
Confidence 46999998763
No 486
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=43.67 E-value=3e+02 Score=26.35 Aligned_cols=48 Identities=17% Similarity=0.012 Sum_probs=37.9
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
..+++.+.++..++.+..+|--.+.++..+.++.+.| ++.+.+.....
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~e 158 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDE 158 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 3477889999999999999988899999999999999 45554444433
No 487
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=43.29 E-value=86 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHATMAD 262 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~ 262 (436)
...|.+....||+..|.+...++.+..
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~ 89 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLS 89 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 444555555566666666666654443
No 488
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=43.23 E-value=47 Score=19.60 Aligned_cols=12 Identities=50% Similarity=0.844 Sum_probs=5.0
Q ss_pred CHHHHHHHHHHH
Q 013821 247 DLYRAEDYYNHA 258 (436)
Q Consensus 247 ~~~~A~~~~~~a 258 (436)
+..+|+.+|+++
T Consensus 20 d~~~A~~~~~~A 31 (36)
T smart00671 20 DLEKALEYYKKA 31 (36)
T ss_pred CHHHHHHHHHHH
Confidence 344444444443
No 489
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=43.18 E-value=4.3e+02 Score=27.94 Aligned_cols=63 Identities=11% Similarity=0.012 Sum_probs=41.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Q 013821 334 QSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD-SHVLAAYAC 400 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~-~~~~~~la~ 400 (436)
....+|+-|++..++. .-+...+|..+|.++.++++ +..|..-|.+++++..++ +++.+.+..
T Consensus 567 ie~ErYqlaV~mckKc---~iD~f~aW~AWGlA~Lk~e~-~aaAR~KFkqafklkgedipdvi~diin 630 (1141)
T KOG1811|consen 567 IEAERYQLAVEMCKKC---GIDTFGAWHAWGLACLKAEN-LAAAREKFKQAFKLKGEDIPDVIFDIIN 630 (1141)
T ss_pred HHHHHHHHHHHHHhhc---CCCcccHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCCCccchHHHHHHH
Confidence 3444555555554443 23445788889999999998 999999999998876443 344444443
No 490
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=43.08 E-value=68 Score=23.40 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=9.4
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013821 335 SKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~ 351 (436)
..|++++|+.+|..+++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 35566666655555543
No 491
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=42.63 E-value=1.3e+02 Score=31.27 Aligned_cols=18 Identities=6% Similarity=-0.147 Sum_probs=8.3
Q ss_pred hHHHHcCCHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSR 348 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~ 348 (436)
-.+++.++|.+|+.++-.
T Consensus 326 g~~yR~~~~~eA~~~Wa~ 343 (618)
T PF05053_consen 326 GYYYRHKRYREALRSWAE 343 (618)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344555555555544433
No 492
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=42.57 E-value=1.9e+02 Score=29.18 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=50.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 410 (436)
.+|++.|++.+|++.-...+-.+|++-.+..++-.-...+|. -+.-+. .+.+.....++.++.-+...++++.
T Consensus 141 ~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~-s~d~l~------DlE~~~~~~~Fir~v~~y~~~d~~~ 213 (471)
T KOG4459|consen 141 FAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGV-SEDELT------DLERREHEQWFIRGVRLYSGEDPRQ 213 (471)
T ss_pred HHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCC-Cccccc------ccccchHHHHHHHHhhhccccCchh
Confidence 788899999999999999899999988888877765545554 221111 1223333445555555555555555
Q ss_pred HHHHHHHH
Q 013821 411 DSKSSDQF 418 (436)
Q Consensus 411 A~~~~~~a 418 (436)
.+..++.+
T Consensus 214 ~v~~ve~A 221 (471)
T KOG4459|consen 214 CVPEVELA 221 (471)
T ss_pred cchhHHHH
Confidence 44433333
No 493
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.48 E-value=1.4e+02 Score=22.09 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q 013821 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-------NPGD 356 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~ 356 (436)
..|+.++.+| .-+...|++++|+.+|..+|+. .|+.
T Consensus 4 ~~a~~l~~~A-------------------------------------ve~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 4 LAAKEVLKRA-------------------------------------VELDQEGRFQEALVCYQEGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHH-------------------------------------HHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCH
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821 357 GEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~eA~~~~~~ 383 (436)
..--.....+...+.+ -+.-...+.+
T Consensus 47 ~~k~~~r~ki~eY~~R-AE~Lk~~l~~ 72 (77)
T cd02683 47 AKKKNLRQKISEYMDR-AEAIKKRLDQ 72 (77)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHh
No 494
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.45 E-value=2.4e+02 Score=24.91 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=29.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++.+.|.+++|.+.+++.+. +|+.......|..+-.+.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 778899999999999999988 777766655555554433
No 495
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=42.27 E-value=4.2e+02 Score=27.57 Aligned_cols=39 Identities=10% Similarity=-0.048 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~ 394 (436)
....|..++++|...+.|...-..-.+.....+|.++-+
T Consensus 201 ~L~GWL~L~rv~~~~~~~p~qlk~~i~~Wq~~yPqhPaA 239 (604)
T COG3107 201 ALQGWLDLARVYKDNGSDPPQLKAGIEDWQKRYPQHPAA 239 (604)
T ss_pred ccchHHHHHHHHHhcccCHHHHHHHHHHHHhcCCCCchh
Confidence 456899999999999987777777777777788887744
No 496
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.17 E-value=3.7e+02 Score=26.93 Aligned_cols=95 Identities=16% Similarity=0.062 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013821 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ---DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
.++..+|..|...|+ ++.|+++|-++-..--. ....+.++. .+-...|+|..-.
T Consensus 151 ra~~Dl~dhy~~cG~-l~~Alr~YsR~RdYCTs~khvInm~ln~i----------------------~VSI~~~nw~hv~ 207 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQ-LDNALRCYSRARDYCTSAKHVINMCLNLI----------------------LVSIYMGNWGHVL 207 (466)
T ss_pred HHHHHHHHHHHHhcc-HHHHHhhhhhhhhhhcchHHHHHHHHHHH----------------------HHHHhhcchhhhh
Confidence 456667777777764 88888888776554433 334455555 4444455555555
Q ss_pred HHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013821 344 EYFSRAILAN--------PGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 344 ~~~~~al~~~--------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al 385 (436)
.+..+|...- .-.+.+...-|.+...+++ |..|.++|-.+.
T Consensus 208 sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkk-yk~aa~~fL~~~ 256 (466)
T KOG0686|consen 208 SYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKK-YKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHH-HHHHHHHHHhCC
Confidence 5555544331 0012345555666666777 899988887654
No 497
>PRK09687 putative lyase; Provisional
Probab=41.92 E-value=3.1e+02 Score=25.91 Aligned_cols=154 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
.++...+..++... +..+.+..+..+...++ .+|+..+-.++. ..+..+...-+..+-..+-+...++..+.+++
T Consensus 127 ~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~--d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L 201 (280)
T PRK09687 127 PKIVEQSQITAFDK--STNVRFAVAFALSVIND-EAAIPLLINLLK--DPNGDVRNWAAFALNSNKYDNPDIREAFVAML 201 (280)
T ss_pred hHHHHHHHHHhhCC--CHHHHHHHHHHHhccCC-HHHHHHHHHHhc--CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH
Q 013821 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~ 374 (436)
.-.+..+...-. ..+.+.++ ..|+..+-+.++... +......++...|.
T Consensus 202 --~D~~~~VR~~A~----------------------~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~-- 250 (280)
T PRK09687 202 --QDKNEEIRIEAI----------------------IGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGD-- 250 (280)
T ss_pred --cCCChHHHHHHH----------------------HHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCC--
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821 375 DKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 375 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.+|+..+.+++..+| +..+....-+.+.+.
T Consensus 251 ~~a~p~L~~l~~~~~-d~~v~~~a~~a~~~~ 280 (280)
T PRK09687 251 KTLLPVLDTLLYKFD-DNEIITKAIDKLKRS 280 (280)
T ss_pred HhHHHHHHHHHhhCC-ChhHHHHHHHHHhcC
No 498
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=41.71 E-value=1.2e+02 Score=30.31 Aligned_cols=102 Identities=8% Similarity=-0.040 Sum_probs=59.1
Q ss_pred HHhhhhhCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 204 VDLIMPNFDDSAEAEEYYKRMIDEYPCHP-------LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 204 lg~~~~~~g~~~~A~~~~~~al~~~P~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
|-.+..-+|+++. --+.++++|... .+-+..|-+|..+++|.+|+..|-..+-.-.......-..+.++
T Consensus 241 LlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~ 316 (525)
T KOG3677|consen 241 LLRMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQY 316 (525)
T ss_pred HHHHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhH
Confidence 3345556788544 344556665432 22378899999999999999999887654211112222333333
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Q 013821 277 WELHRDQHRALTYFERAALAAPQD--SNILAAYAC 309 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~--~~~~~~la~ 309 (436)
-..++..+.--..+.-++...|.. ...+..++.
T Consensus 317 d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~E 351 (525)
T KOG3677|consen 317 DMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAE 351 (525)
T ss_pred hhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHH
Confidence 344444566666666677777763 334444443
No 499
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=41.51 E-value=66 Score=19.40 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 013821 283 QHRALTYFERAA 294 (436)
Q Consensus 283 ~~~A~~~~~~al 294 (436)
+++|+.+|+++.
T Consensus 24 ~~~A~~~~~~Aa 35 (39)
T PF08238_consen 24 YEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 344444444443
No 500
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=41.44 E-value=74 Score=23.25 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+++|+.++.+| .-....|++++|+.+|.++++.
T Consensus 3 ~~~A~~l~~~A-------------------------------------v~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 3 LQKAIELVKKA-------------------------------------IEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHH-------------------------------------HHHHHcCCHHHHHHHHHHHHHH
Done!