Query 013821
Match_columns 436
No_of_seqs 617 out of 4075
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 17:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 5.5E-28 1.9E-32 238.0 29.8 250 178-430 116-377 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 7.5E-28 2.6E-32 237.1 29.1 250 178-430 82-343 (388)
3 2pl2_A Hypothetical conserved 100.0 7.5E-28 2.5E-32 218.9 25.8 199 197-420 4-213 (217)
4 3hym_B Cell division cycle pro 100.0 1E-26 3.6E-31 222.1 25.2 250 178-430 37-308 (330)
5 4eqf_A PEX5-related protein; a 100.0 9.5E-27 3.3E-31 227.1 24.2 227 199-427 66-316 (365)
6 2h6f_A Protein farnesyltransfe 100.0 9.9E-27 3.4E-31 229.5 23.7 236 189-428 89-355 (382)
7 3ieg_A DNAJ homolog subfamily 99.9 1.1E-25 3.8E-30 217.1 29.7 250 178-430 52-344 (359)
8 1fch_A Peroxisomal targeting s 99.9 8.1E-26 2.8E-30 220.0 27.3 245 178-425 40-318 (368)
9 3hym_B Cell division cycle pro 99.9 3.6E-25 1.2E-29 211.4 28.8 234 196-430 20-274 (330)
10 2xpi_A Anaphase-promoting comp 99.9 3.8E-25 1.3E-29 229.6 31.2 253 181-436 323-595 (597)
11 3ieg_A DNAJ homolog subfamily 99.9 5.4E-25 1.9E-29 212.2 29.3 250 178-430 18-310 (359)
12 2y4t_A DNAJ homolog subfamily 99.9 1.2E-24 4.2E-29 217.6 32.2 245 181-428 44-365 (450)
13 2y4t_A DNAJ homolog subfamily 99.9 6.6E-25 2.3E-29 219.6 28.2 228 177-407 108-378 (450)
14 1fch_A Peroxisomal targeting s 99.9 2.8E-25 9.6E-30 216.1 24.3 240 178-421 79-359 (368)
15 3uq3_A Heat shock protein STI1 99.9 1.8E-24 6.2E-29 199.0 27.3 214 198-422 5-237 (258)
16 2q7f_A YRRB protein; TPR, prot 99.9 1E-24 3.6E-29 199.3 25.4 208 199-430 24-231 (243)
17 3cv0_A Peroxisome targeting si 99.9 1.2E-24 4.1E-29 207.5 26.4 224 199-424 22-272 (327)
18 4eqf_A PEX5-related protein; a 99.9 1.1E-25 3.8E-30 219.5 19.5 241 178-421 80-356 (365)
19 3cv0_A Peroxisome targeting si 99.9 3.1E-25 1.1E-29 211.6 20.5 243 178-423 36-317 (327)
20 3vtx_A MAMA; tetratricopeptide 99.9 2.2E-24 7.5E-29 189.7 23.8 170 198-391 5-174 (184)
21 3vtx_A MAMA; tetratricopeptide 99.9 6E-24 2.1E-28 186.9 25.6 172 230-425 3-174 (184)
22 2pl2_A Hypothetical conserved 99.9 2.4E-24 8.1E-29 195.7 23.7 177 229-430 2-189 (217)
23 2ho1_A Type 4 fimbrial biogene 99.9 1.2E-23 4E-28 193.9 27.4 208 198-429 37-246 (252)
24 2xpi_A Anaphase-promoting comp 99.9 2E-23 6.7E-28 216.7 31.6 253 179-435 288-560 (597)
25 2vq2_A PILW, putative fimbrial 99.9 4.6E-23 1.6E-27 185.6 29.0 211 196-430 6-220 (225)
26 3u4t_A TPR repeat-containing p 99.9 3.1E-24 1.1E-28 199.9 21.5 230 199-430 4-259 (272)
27 3fp2_A TPR repeat-containing p 99.9 1.6E-23 5.6E-28 214.1 27.9 246 177-426 39-412 (537)
28 3fp2_A TPR repeat-containing p 99.9 2.4E-23 8.3E-28 212.8 27.0 249 178-430 217-500 (537)
29 4abn_A Tetratricopeptide repea 99.9 7.1E-24 2.4E-28 215.4 22.8 211 181-417 86-317 (474)
30 2h6f_A Protein farnesyltransfe 99.9 1.2E-23 3.9E-28 207.6 21.7 226 177-405 111-366 (382)
31 4i17_A Hypothetical protein; T 99.9 5E-23 1.7E-27 187.5 23.5 210 197-430 6-218 (228)
32 4gyw_A UDP-N-acetylglucosamine 99.9 1.8E-23 6.2E-28 221.6 23.1 171 228-422 5-175 (723)
33 2gw1_A Mitochondrial precursor 99.9 1E-23 3.5E-28 214.0 20.1 249 179-430 205-487 (514)
34 4gyw_A UDP-N-acetylglucosamine 99.9 2.9E-23 1E-27 220.1 21.4 174 192-390 4-177 (723)
35 2gw1_A Mitochondrial precursor 99.9 3.2E-22 1.1E-26 203.0 28.1 248 177-428 20-374 (514)
36 2q7f_A YRRB protein; TPR, prot 99.9 2.5E-22 8.6E-27 183.3 24.5 204 178-406 38-241 (243)
37 3mkr_A Coatomer subunit epsilo 99.9 1.9E-22 6.3E-27 191.8 23.8 205 199-430 66-273 (291)
38 1ouv_A Conserved hypothetical 99.9 2.9E-21 1E-25 180.7 30.4 218 196-425 4-255 (273)
39 4g1t_A Interferon-induced prot 99.9 9.4E-22 3.2E-26 198.2 28.9 251 176-428 64-370 (472)
40 4abn_A Tetratricopeptide repea 99.9 2.1E-22 7.3E-27 204.6 23.1 194 212-430 82-296 (474)
41 4i17_A Hypothetical protein; T 99.9 6.2E-22 2.1E-26 180.2 22.3 156 229-408 4-169 (228)
42 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.5E-22 5E-27 188.5 18.5 223 178-426 20-249 (275)
43 2ond_A Cleavage stimulation fa 99.9 8.6E-22 2.9E-26 188.4 24.2 220 181-425 34-274 (308)
44 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.6E-22 1.9E-26 184.5 20.1 209 177-415 57-269 (275)
45 3uq3_A Heat shock protein STI1 99.9 1.4E-21 4.9E-26 179.6 21.8 197 231-430 4-211 (258)
46 4g1t_A Interferon-induced prot 99.9 9.4E-22 3.2E-26 198.2 22.4 249 178-429 153-467 (472)
47 3u4t_A TPR repeat-containing p 99.9 3.3E-22 1.1E-26 186.1 17.6 225 178-406 18-269 (272)
48 4a1s_A PINS, partner of inscut 99.9 4.9E-22 1.7E-26 196.5 17.8 250 177-429 62-380 (411)
49 3sf4_A G-protein-signaling mod 99.9 1.9E-21 6.5E-26 190.9 19.9 246 178-426 24-341 (406)
50 3sf4_A G-protein-signaling mod 99.9 8E-22 2.7E-26 193.7 16.8 228 196-425 7-300 (406)
51 4a1s_A PINS, partner of inscut 99.9 5.9E-22 2E-26 195.9 15.9 226 198-425 48-336 (411)
52 2ho1_A Type 4 fimbrial biogene 99.9 2E-20 6.9E-25 172.1 25.0 196 178-398 52-249 (252)
53 3qky_A Outer membrane assembly 99.9 5.4E-21 1.8E-25 177.9 20.7 209 196-411 13-251 (261)
54 2pzi_A Probable serine/threoni 99.9 1.7E-21 5.7E-26 206.6 18.5 184 196-407 392-583 (681)
55 3ro2_A PINS homolog, G-protein 99.9 1.5E-21 5.2E-26 185.6 16.4 245 178-425 20-336 (338)
56 3ro2_A PINS homolog, G-protein 99.9 2.3E-21 7.9E-26 184.4 17.5 225 199-425 6-296 (338)
57 2vq2_A PILW, putative fimbrial 99.9 5.8E-20 2E-24 165.1 23.8 179 227-429 3-185 (225)
58 3nf1_A KLC 1, kinesin light ch 99.9 5.7E-21 2E-25 180.6 17.1 205 196-424 25-310 (311)
59 4ga2_A E3 SUMO-protein ligase 99.9 1.5E-21 5.2E-26 166.7 11.1 147 203-372 2-149 (150)
60 3as5_A MAMA; tetratricopeptide 99.9 7E-20 2.4E-24 159.2 21.9 172 232-427 8-179 (186)
61 3qky_A Outer membrane assembly 99.9 4.6E-20 1.6E-24 171.6 21.3 182 225-430 8-233 (261)
62 3as5_A MAMA; tetratricopeptide 99.9 6.8E-20 2.3E-24 159.2 20.9 171 198-392 8-178 (186)
63 3urz_A Uncharacterized protein 99.9 2E-20 6.8E-25 168.6 17.6 177 198-400 4-198 (208)
64 3mkr_A Coatomer subunit epsilo 99.9 3.4E-19 1.2E-23 169.3 26.9 204 179-415 81-288 (291)
65 3urz_A Uncharacterized protein 99.8 3.6E-20 1.2E-24 166.9 18.6 176 231-430 3-195 (208)
66 2ond_A Cleavage stimulation fa 99.8 1E-19 3.5E-24 173.9 21.8 183 215-421 33-232 (308)
67 4ga2_A E3 SUMO-protein ligase 99.8 4.8E-21 1.7E-25 163.5 10.6 147 237-407 2-149 (150)
68 1qqe_A Vesicular transport pro 99.8 4.4E-20 1.5E-24 175.2 15.6 202 201-426 40-274 (292)
69 3dra_A Protein farnesyltransfe 99.8 6.1E-19 2.1E-23 167.9 22.6 224 180-427 50-294 (306)
70 2pzi_A Probable serine/threoni 99.8 7.9E-20 2.7E-24 193.7 16.4 176 227-430 389-572 (681)
71 2yhc_A BAMD, UPF0169 lipoprote 99.8 7.1E-19 2.4E-23 160.2 20.4 188 198-425 4-217 (225)
72 3edt_B KLC 2, kinesin light ch 99.8 1.4E-19 4.6E-24 168.2 15.8 190 209-422 12-282 (283)
73 1ouv_A Conserved hypothetical 99.8 1.3E-17 4.4E-22 155.8 27.5 186 228-423 2-217 (273)
74 2r5s_A Uncharacterized protein 99.8 4E-19 1.4E-23 155.4 13.9 162 235-420 9-172 (176)
75 2ooe_A Cleavage stimulation fa 99.8 3.6E-18 1.2E-22 175.5 23.1 218 182-424 257-495 (530)
76 3qou_A Protein YBBN; thioredox 99.8 2.4E-18 8.2E-23 163.0 19.6 169 228-420 113-283 (287)
77 2r5s_A Uncharacterized protein 99.8 3.9E-19 1.3E-23 155.4 12.9 164 199-386 7-172 (176)
78 3ulq_A Response regulator aspa 99.8 7.3E-19 2.5E-23 172.8 15.2 223 201-425 106-372 (383)
79 1qqe_A Vesicular transport pro 99.8 1.5E-18 5E-23 164.7 16.4 178 213-428 32-235 (292)
80 4gco_A Protein STI-1; structur 99.8 1.7E-18 5.9E-23 143.1 14.8 117 227-366 8-124 (126)
81 2vsy_A XCC0866; transferase, g 99.8 5.8E-18 2E-22 175.5 22.2 165 211-399 2-169 (568)
82 4gco_A Protein STI-1; structur 99.8 3.4E-18 1.2E-22 141.3 14.8 122 257-402 4-125 (126)
83 3dss_A Geranylgeranyl transfer 99.8 1E-16 3.4E-21 153.6 26.7 238 181-428 48-311 (331)
84 2xm6_A Protein corresponding t 99.8 9.6E-17 3.3E-21 163.2 28.4 229 181-424 169-435 (490)
85 3qou_A Protein YBBN; thioredox 99.8 8.4E-18 2.9E-22 159.2 17.9 167 196-386 115-283 (287)
86 2vsy_A XCC0866; transferase, g 99.8 2.5E-17 8.6E-22 170.7 21.3 160 245-428 2-164 (568)
87 1p5q_A FKBP52, FK506-binding p 99.8 6.6E-20 2.3E-24 177.8 1.4 152 246-421 127-294 (336)
88 1hz4_A MALT regulatory protein 99.8 3.6E-17 1.2E-21 159.7 20.8 244 178-423 29-324 (373)
89 2xm6_A Protein corresponding t 99.8 4.9E-16 1.7E-20 157.9 29.4 212 198-421 111-360 (490)
90 3edt_B KLC 2, kinesin light ch 99.7 1.2E-17 4E-22 155.0 14.7 209 178-388 16-282 (283)
91 2ooe_A Cleavage stimulation fa 99.7 7.5E-17 2.6E-21 165.6 22.1 188 215-426 255-459 (530)
92 3dss_A Geranylgeranyl transfer 99.7 2.5E-16 8.5E-21 150.9 24.1 193 211-426 42-272 (331)
93 3q15_A PSP28, response regulat 99.7 2.4E-17 8.2E-22 161.8 17.4 221 200-422 103-366 (378)
94 3nf1_A KLC 1, kinesin light ch 99.7 1.5E-18 5.2E-23 163.8 8.4 211 178-390 42-310 (311)
95 3dra_A Protein farnesyltransfe 99.7 3E-16 1E-20 149.3 23.3 189 212-422 47-251 (306)
96 3gyz_A Chaperone protein IPGC; 99.7 8.1E-18 2.8E-22 143.6 10.4 112 255-390 25-136 (151)
97 3gyz_A Chaperone protein IPGC; 99.7 9.5E-18 3.3E-22 143.2 9.9 121 283-426 18-138 (151)
98 3rjv_A Putative SEL1 repeat pr 99.7 1.8E-16 6.3E-21 143.0 18.4 176 215-421 3-197 (212)
99 1p5q_A FKBP52, FK506-binding p 99.7 1E-17 3.5E-22 162.3 10.9 154 210-387 125-294 (336)
100 3ulq_A Response regulator aspa 99.7 2.5E-17 8.5E-22 161.8 13.5 211 177-390 117-371 (383)
101 2ifu_A Gamma-SNAP; membrane fu 99.7 5.5E-17 1.9E-21 154.9 14.8 162 239-426 43-228 (307)
102 4f3v_A ESX-1 secretion system 99.7 1E-17 3.4E-22 156.4 8.7 190 210-424 18-240 (282)
103 2c2l_A CHIP, carboxy terminus 99.7 1.9E-17 6.4E-22 156.3 10.4 197 197-422 3-200 (281)
104 3q7a_A Farnesyltransferase alp 99.7 1.8E-15 6.2E-20 145.5 24.1 223 178-424 69-335 (349)
105 1dce_A Protein (RAB geranylger 99.7 3.2E-17 1.1E-21 169.5 12.5 189 213-424 44-270 (567)
106 2fo7_A Synthetic consensus TPR 99.7 2.7E-15 9.3E-20 122.5 20.5 133 234-390 3-135 (136)
107 1hz4_A MALT regulatory protein 99.7 1.2E-15 4E-20 148.9 21.6 224 199-424 15-285 (373)
108 2vgx_A Chaperone SYCD; alterna 99.7 5.8E-17 2E-21 137.8 10.4 118 219-359 8-125 (148)
109 2fo7_A Synthetic consensus TPR 99.7 2.4E-15 8.2E-20 122.8 18.8 135 199-356 2-136 (136)
110 2vgx_A Chaperone SYCD; alterna 99.7 9.2E-17 3.2E-21 136.5 10.1 120 251-394 6-125 (148)
111 3rjv_A Putative SEL1 repeat pr 99.7 1.8E-15 6.2E-20 136.4 18.9 186 181-400 4-208 (212)
112 2ifu_A Gamma-SNAP; membrane fu 99.7 1.2E-15 4E-20 145.7 17.2 187 200-413 38-253 (307)
113 3e4b_A ALGK; tetratricopeptide 99.7 5.3E-15 1.8E-19 149.1 22.6 189 200-422 178-388 (452)
114 2xcb_A PCRH, regulatory protei 99.7 3E-16 1E-20 132.0 11.1 123 219-364 5-127 (142)
115 2fbn_A 70 kDa peptidylprolyl i 99.7 1.8E-16 6.1E-21 141.0 9.3 182 202-425 8-190 (198)
116 2e2e_A Formate-dependent nitri 99.7 1E-15 3.5E-20 133.2 13.4 131 207-360 19-152 (177)
117 2xcb_A PCRH, regulatory protei 99.6 5E-16 1.7E-20 130.6 10.2 125 253-401 5-129 (142)
118 3upv_A Heat shock protein STI1 99.6 5.3E-15 1.8E-19 121.2 15.7 113 232-367 4-122 (126)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1E-14 3.6E-19 130.3 18.7 133 233-392 7-155 (213)
120 1a17_A Serine/threonine protei 99.6 2E-14 6.9E-19 122.6 19.7 129 233-385 14-144 (166)
121 2fbn_A 70 kDa peptidylprolyl i 99.6 5.8E-16 2E-20 137.7 10.1 110 198-308 38-163 (198)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.6 8.7E-15 3E-19 130.8 17.5 132 199-356 7-154 (213)
123 2qfc_A PLCR protein; TPR, HTH, 99.6 2.2E-14 7.5E-19 135.7 21.0 170 229-422 72-267 (293)
124 3upv_A Heat shock protein STI1 99.6 1E-14 3.5E-19 119.4 15.9 118 264-405 2-125 (126)
125 1a17_A Serine/threonine protei 99.6 2.2E-14 7.6E-19 122.3 18.6 133 266-422 13-147 (166)
126 3q15_A PSP28, response regulat 99.6 3.2E-15 1.1E-19 146.6 15.1 168 233-424 102-293 (378)
127 2e2e_A Formate-dependent nitri 99.6 4.6E-15 1.6E-19 129.1 14.3 130 242-395 20-152 (177)
128 3e4b_A ALGK; tetratricopeptide 99.6 2.6E-14 8.9E-19 144.0 21.9 194 197-421 140-351 (452)
129 4f3v_A ESX-1 secretion system 99.6 1E-16 3.5E-21 149.5 2.9 197 178-401 21-250 (282)
130 3sz7_A HSC70 cochaperone (SGT) 99.6 1.2E-14 4.1E-19 125.0 15.0 111 231-364 10-120 (164)
131 2qfc_A PLCR protein; TPR, HTH, 99.6 5.1E-14 1.7E-18 133.1 20.7 165 200-388 77-267 (293)
132 2c2l_A CHIP, carboxy terminus 99.6 2.1E-15 7.2E-20 142.2 10.7 168 229-425 1-168 (281)
133 4gcn_A Protein STI-1; structur 99.6 1.1E-14 3.9E-19 120.1 13.8 116 232-364 8-123 (127)
134 2vyi_A SGTA protein; chaperone 99.6 1.8E-14 6.3E-19 117.2 15.0 120 230-372 10-129 (131)
135 2lni_A Stress-induced-phosphop 99.6 1.6E-14 5.5E-19 118.3 14.5 116 232-370 16-131 (133)
136 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.1E-15 3.6E-20 154.4 8.1 152 209-384 245-412 (457)
137 2vyi_A SGTA protein; chaperone 99.6 3.1E-14 1.1E-18 115.8 15.3 125 261-409 7-131 (131)
138 1dce_A Protein (RAB geranylger 99.6 7.8E-14 2.7E-18 144.1 21.7 164 243-429 39-229 (567)
139 3q7a_A Farnesyltransferase alp 99.6 5.2E-14 1.8E-18 135.3 18.9 175 196-392 52-242 (349)
140 3sz7_A HSC70 cochaperone (SGT) 99.6 2.5E-14 8.6E-19 123.0 14.9 117 262-402 7-123 (164)
141 2lni_A Stress-induced-phosphop 99.6 2.8E-14 9.5E-19 116.8 14.3 122 262-407 12-133 (133)
142 2yhc_A BAMD, UPF0169 lipoprote 99.6 4.1E-14 1.4E-18 128.5 16.8 192 178-392 19-218 (225)
143 3u3w_A Transcriptional activat 99.6 2.7E-14 9.1E-19 135.1 16.0 162 203-387 80-266 (293)
144 4gcn_A Protein STI-1; structur 99.6 3.8E-14 1.3E-18 116.9 14.6 108 198-307 8-122 (127)
145 1na0_A Designed protein CTPR3; 99.6 2E-13 6.8E-18 110.0 18.6 116 232-370 9-124 (125)
146 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.5E-15 5.1E-20 153.3 7.2 147 244-414 246-407 (457)
147 1xi4_A Clathrin heavy chain; a 99.6 2E-13 6.9E-18 148.8 23.8 217 196-435 1103-1324(1630)
148 3u3w_A Transcriptional activat 99.6 4.4E-14 1.5E-18 133.6 16.6 164 235-422 78-267 (293)
149 3q49_B STIP1 homology and U bo 99.6 1E-13 3.5E-18 114.7 15.7 119 227-368 4-127 (137)
150 1hxi_A PEX5, peroxisome target 99.6 4.6E-14 1.6E-18 115.4 13.0 102 200-302 19-120 (121)
151 1na0_A Designed protein CTPR3; 99.6 3.6E-13 1.2E-17 108.4 18.2 121 262-406 4-125 (125)
152 3q49_B STIP1 homology and U bo 99.5 1E-13 3.6E-18 114.6 14.5 122 260-405 3-129 (137)
153 3rkv_A Putative peptidylprolyl 99.5 5.6E-14 1.9E-18 120.5 12.8 115 198-313 11-144 (162)
154 1b89_A Protein (clathrin heavy 99.5 1.6E-14 5.6E-19 142.2 9.9 215 198-435 32-251 (449)
155 1elw_A TPR1-domain of HOP; HOP 99.5 5.6E-13 1.9E-17 106.2 17.3 74 234-308 6-79 (118)
156 2hr2_A Hypothetical protein; a 99.5 4.7E-14 1.6E-18 119.8 10.9 110 198-308 11-143 (159)
157 1elw_A TPR1-domain of HOP; HOP 99.5 3.8E-13 1.3E-17 107.3 15.9 112 198-310 4-115 (118)
158 1hxi_A PEX5, peroxisome target 99.5 1E-13 3.5E-18 113.3 12.7 95 331-426 25-119 (121)
159 3rkv_A Putative peptidylprolyl 99.5 1.4E-13 4.8E-18 118.0 14.0 76 232-308 11-104 (162)
160 3gw4_A Uncharacterized protein 99.5 1.1E-13 3.6E-18 122.4 13.2 93 331-424 74-179 (203)
161 1wao_1 Serine/threonine protei 99.5 1.8E-14 6E-19 146.2 9.2 136 198-356 6-154 (477)
162 3mv2_B Coatomer subunit epsilo 99.5 2.6E-13 8.8E-18 128.1 16.1 187 217-430 85-291 (310)
163 3gw4_A Uncharacterized protein 99.5 1.7E-13 5.6E-18 121.1 13.4 157 209-389 3-178 (203)
164 1wao_1 Serine/threonine protei 99.5 1.2E-14 4.1E-19 147.5 6.3 165 232-420 6-196 (477)
165 2hr2_A Hypothetical protein; a 99.5 1.4E-13 4.9E-18 116.8 12.0 96 331-427 19-137 (159)
166 2dba_A Smooth muscle cell asso 99.5 5.3E-13 1.8E-17 111.4 15.3 112 196-308 26-140 (148)
167 4e6h_A MRNA 3'-END-processing 99.5 2.9E-12 9.9E-17 134.5 24.3 214 215-430 326-579 (679)
168 2dba_A Smooth muscle cell asso 99.5 8E-13 2.7E-17 110.3 15.7 117 227-366 23-142 (148)
169 2xev_A YBGF; tetratricopeptide 99.5 1.5E-12 5.2E-17 106.3 16.0 112 199-311 3-120 (129)
170 2if4_A ATFKBP42; FKBP-like, al 99.5 2.4E-14 8.3E-19 138.6 6.0 157 229-426 176-333 (338)
171 2if4_A ATFKBP42; FKBP-like, al 99.5 6.7E-14 2.3E-18 135.5 8.8 138 198-358 179-334 (338)
172 2kck_A TPR repeat; tetratricop 99.5 5E-13 1.7E-17 105.6 12.0 107 297-426 2-111 (112)
173 1elr_A TPR2A-domain of HOP; HO 99.5 1.1E-12 3.7E-17 106.6 14.0 118 231-372 3-127 (131)
174 2xev_A YBGF; tetratricopeptide 99.4 3.3E-12 1.1E-16 104.3 15.9 73 235-308 5-83 (129)
175 1zu2_A Mitochondrial import re 99.4 3.9E-13 1.3E-17 113.9 10.4 100 209-308 13-132 (158)
176 2kck_A TPR repeat; tetratricop 99.4 1.4E-12 4.9E-17 102.9 13.0 104 196-300 4-110 (112)
177 1elr_A TPR2A-domain of HOP; HO 99.4 1.6E-12 5.4E-17 105.6 13.1 117 265-406 3-126 (131)
178 4b4t_Q 26S proteasome regulato 99.4 1.6E-12 5.3E-17 129.0 15.1 201 198-422 4-246 (434)
179 1xi4_A Clathrin heavy chain; a 99.4 9.1E-12 3.1E-16 136.0 21.9 207 196-417 1132-1380(1630)
180 1ihg_A Cyclophilin 40; ppiase 99.4 1.7E-12 5.8E-17 127.2 15.0 140 232-413 223-362 (370)
181 1ihg_A Cyclophilin 40; ppiase 99.4 1.8E-12 6.3E-17 127.0 14.1 122 267-430 224-345 (370)
182 1zu2_A Mitochondrial import re 99.4 1.5E-12 5.3E-17 110.3 11.6 106 243-359 13-127 (158)
183 3k9i_A BH0479 protein; putativ 99.4 6.4E-13 2.2E-17 107.5 8.6 98 210-308 2-102 (117)
184 1b89_A Protein (clathrin heavy 99.4 1.2E-13 4.2E-18 136.0 3.8 217 178-417 76-307 (449)
185 3ro3_A PINS homolog, G-protein 99.4 6E-12 2E-16 105.8 13.0 132 233-388 10-159 (164)
186 3k9i_A BH0479 protein; putativ 99.4 1.2E-12 4.2E-17 105.8 8.1 97 282-401 5-104 (117)
187 3ro3_A PINS homolog, G-protein 99.3 6.9E-12 2.4E-16 105.4 12.3 135 266-424 9-161 (164)
188 3mv2_B Coatomer subunit epsilo 99.3 5.1E-11 1.8E-15 112.4 18.2 186 182-396 85-291 (310)
189 4e6h_A MRNA 3'-END-processing 99.2 4.5E-10 1.5E-14 117.9 20.6 208 183-393 329-576 (679)
190 2kat_A Uncharacterized protein 99.2 1.2E-10 4.1E-15 93.3 12.1 98 285-405 3-102 (115)
191 2kat_A Uncharacterized protein 99.2 1.7E-10 5.9E-15 92.4 12.4 95 216-311 3-99 (115)
192 2l6j_A TPR repeat-containing p 99.2 2.4E-11 8.2E-16 96.1 6.1 86 331-417 12-103 (111)
193 2l6j_A TPR repeat-containing p 99.2 2.3E-11 7.8E-16 96.3 5.9 92 198-290 4-101 (111)
194 4b4t_Q 26S proteasome regulato 99.2 5.1E-10 1.8E-14 110.8 16.5 167 233-423 5-206 (434)
195 1na3_A Designed protein CTPR2; 99.2 3.4E-10 1.1E-14 86.0 11.7 79 199-277 10-88 (91)
196 1na3_A Designed protein CTPR2; 99.1 4.8E-10 1.6E-14 85.1 11.8 75 331-406 17-91 (91)
197 3u64_A Protein TP_0956; tetrat 99.1 2.2E-09 7.6E-14 99.1 15.5 189 215-425 49-273 (301)
198 2kc7_A BFR218_protein; tetratr 99.1 3.1E-10 1.1E-14 88.1 7.6 91 201-300 3-94 (99)
199 3ma5_A Tetratricopeptide repea 99.0 1.4E-09 4.9E-14 85.0 10.3 84 227-311 2-87 (100)
200 1klx_A Cysteine rich protein B 99.0 6.7E-09 2.3E-13 86.5 14.9 88 213-308 10-100 (138)
201 1klx_A Cysteine rich protein B 99.0 6.8E-09 2.3E-13 86.5 14.8 120 246-399 9-136 (138)
202 3ma5_A Tetratricopeptide repea 99.0 1.9E-09 6.7E-14 84.3 10.5 88 296-406 2-91 (100)
203 2kc7_A BFR218_protein; tetratr 99.0 1.1E-09 3.6E-14 85.0 7.6 87 331-426 8-95 (99)
204 3ly7_A Transcriptional activat 99.0 4.7E-08 1.6E-12 93.9 19.5 146 222-392 184-344 (372)
205 3n71_A Histone lysine methyltr 98.9 3.5E-09 1.2E-13 107.0 11.9 129 236-388 313-465 (490)
206 3n71_A Histone lysine methyltr 98.9 5.2E-09 1.8E-13 105.8 11.7 123 275-421 318-464 (490)
207 2uy1_A Cleavage stimulation fa 98.9 2.2E-07 7.4E-12 94.3 23.6 192 214-420 195-412 (493)
208 3ly7_A Transcriptional activat 98.9 7.6E-08 2.6E-12 92.4 18.0 156 257-426 185-344 (372)
209 2uy1_A Cleavage stimulation fa 98.8 1.1E-06 3.7E-11 89.1 24.3 201 212-418 151-380 (493)
210 3u64_A Protein TP_0956; tetrat 98.7 2.8E-07 9.7E-12 85.1 13.7 108 260-390 146-272 (301)
211 1pc2_A Mitochondria fission pr 98.6 3.9E-07 1.3E-11 76.2 12.2 96 283-401 14-114 (152)
212 3bee_A Putative YFRE protein; 98.6 2.9E-07 1E-11 70.9 10.5 72 353-424 2-75 (93)
213 3bee_A Putative YFRE protein; 98.6 3E-07 1E-11 70.9 9.5 71 228-299 2-75 (93)
214 1pc2_A Mitochondria fission pr 98.5 8.6E-07 2.9E-11 74.1 11.7 96 212-308 12-112 (152)
215 3qww_A SET and MYND domain-con 98.5 2E-07 7E-12 92.6 9.4 95 335-430 310-425 (433)
216 2v5f_A Prolyl 4-hydroxylase su 98.5 1.7E-06 5.8E-11 68.0 11.9 70 331-401 13-89 (104)
217 2v5f_A Prolyl 4-hydroxylase su 98.5 1.2E-06 4.2E-11 68.8 11.0 74 200-273 7-87 (104)
218 3qww_A SET and MYND domain-con 98.5 1.8E-06 6.1E-11 85.8 14.0 98 207-305 307-425 (433)
219 3qwp_A SET and MYND domain-con 98.4 6.2E-07 2.1E-11 89.2 8.6 99 331-430 295-414 (429)
220 3qwp_A SET and MYND domain-con 98.3 2E-06 6.8E-11 85.5 11.0 109 239-370 294-426 (429)
221 4g26_A Pentatricopeptide repea 98.3 0.00012 4.1E-09 74.2 22.6 163 235-421 29-204 (501)
222 4g26_A Pentatricopeptide repea 98.3 0.0002 7E-09 72.4 24.4 158 206-387 34-204 (501)
223 4h7y_A Dual specificity protei 98.1 7.4E-05 2.5E-09 61.5 13.6 107 227-357 8-128 (161)
224 4h7y_A Dual specificity protei 98.0 7.5E-05 2.6E-09 61.5 12.6 112 295-430 7-132 (161)
225 1nzn_A CGI-135 protein, fissio 97.9 0.0001 3.5E-09 59.3 11.3 96 283-401 17-117 (126)
226 1nzn_A CGI-135 protein, fissio 97.8 0.00022 7.6E-09 57.3 11.2 96 212-308 15-115 (126)
227 3ffl_A Anaphase-promoting comp 97.6 0.00015 5.2E-09 60.9 7.7 104 331-435 28-165 (167)
228 3ffl_A Anaphase-promoting comp 97.3 0.0017 5.7E-08 54.6 10.0 107 271-402 25-165 (167)
229 1y8m_A FIS1; mitochondria, unk 97.1 0.015 5.3E-07 47.4 13.8 80 298-400 36-119 (144)
230 3o48_A Mitochondria fission 1 97.1 0.0033 1.1E-07 50.7 9.2 79 300-401 39-121 (134)
231 1y8m_A FIS1; mitochondria, unk 96.9 0.028 9.6E-07 45.8 13.9 75 230-305 37-115 (144)
232 3o48_A Mitochondria fission 1 96.8 0.0072 2.5E-07 48.7 9.0 75 356-430 39-116 (134)
233 3mkq_A Coatomer beta'-subunit; 96.6 0.12 4.2E-06 54.5 19.8 95 209-325 610-705 (814)
234 4gns_B Protein CSD3, chitin bi 96.5 0.017 5.7E-07 60.8 12.4 123 245-384 261-397 (754)
235 1zbp_A Hypothetical protein VP 96.4 0.076 2.6E-06 48.2 14.4 122 207-355 6-132 (273)
236 3txn_A 26S proteasome regulato 96.4 0.081 2.8E-06 51.3 15.5 166 233-421 20-210 (394)
237 3mkq_A Coatomer beta'-subunit; 96.1 0.093 3.2E-06 55.5 15.8 166 203-411 634-802 (814)
238 4gns_B Protein CSD3, chitin bi 96.0 0.059 2E-06 56.6 12.9 60 358-418 338-397 (754)
239 3mkq_B Coatomer subunit alpha; 95.8 0.4 1.4E-05 40.7 15.1 100 242-383 15-114 (177)
240 3kae_A CDC27, possible protein 95.7 0.76 2.6E-05 38.5 19.8 44 382-425 197-241 (242)
241 2ff4_A Probable regulatory pro 95.6 0.36 1.2E-05 46.7 16.0 86 334-420 126-233 (388)
242 1zbp_A Hypothetical protein VP 95.4 0.19 6.3E-06 45.7 12.0 95 332-427 6-135 (273)
243 2ff4_A Probable regulatory pro 95.3 0.3 1E-05 47.3 14.4 60 268-350 173-232 (388)
244 3mkq_B Coatomer subunit alpha; 94.9 0.35 1.2E-05 41.1 11.8 47 207-258 14-60 (177)
245 1ya0_A SMG-7 transcript varian 94.6 0.23 7.8E-06 49.7 11.6 73 331-404 160-232 (497)
246 1ya0_A SMG-7 transcript varian 94.6 0.14 4.8E-06 51.2 10.1 79 200-278 154-232 (497)
247 1qsa_A Protein (soluble lytic 94.5 1.8 6.2E-05 44.4 18.2 86 339-427 268-353 (618)
248 3spa_A Mtrpol, DNA-directed RN 94.4 0.49 1.7E-05 51.1 13.8 98 199-297 128-231 (1134)
249 3txn_A 26S proteasome regulato 94.2 0.43 1.5E-05 46.2 12.1 166 199-388 20-211 (394)
250 3kae_A CDC27, possible protein 93.6 0.59 2E-05 39.2 9.9 91 331-427 41-149 (242)
251 4fhn_B Nucleoporin NUP120; pro 93.5 1.7 5.7E-05 48.3 16.9 100 225-325 835-962 (1139)
252 3spa_A Mtrpol, DNA-directed RN 93.4 2.8 9.5E-05 45.4 17.4 97 233-330 128-230 (1134)
253 4b4t_P 26S proteasome regulato 92.0 1.1 3.9E-05 44.0 11.6 97 233-352 138-247 (445)
254 4b4t_R RPN7, 26S proteasome re 91.6 0.51 1.7E-05 46.3 8.6 103 233-354 132-239 (429)
255 4b4t_P 26S proteasome regulato 91.4 11 0.00039 36.8 24.3 52 212-263 30-87 (445)
256 4b4t_R RPN7, 26S proteasome re 91.2 0.43 1.5E-05 46.9 7.6 100 198-298 131-239 (429)
257 4b4t_S RPN3, 26S proteasome re 90.6 0.61 2.1E-05 46.5 7.8 125 241-391 145-303 (523)
258 1qsa_A Protein (soluble lytic 90.4 9.5 0.00033 39.1 17.0 51 362-415 386-436 (618)
259 4fhn_B Nucleoporin NUP120; pro 90.1 4.2 0.00015 45.0 15.1 161 238-408 818-987 (1139)
260 4b4t_S RPN3, 26S proteasome re 87.9 0.26 8.7E-06 49.2 2.9 132 207-356 145-303 (523)
261 4ady_A RPN2, 26S proteasome re 86.5 6 0.0002 42.5 12.6 123 198-325 413-548 (963)
262 3ubw_A 14-3-3E, 14-3-3 protein 85.6 20 0.00067 32.2 14.0 43 233-275 32-75 (261)
263 2wpv_A GET4, UPF0363 protein Y 82.0 29 0.001 32.1 13.8 27 355-382 132-158 (312)
264 3lpz_A GET4 (YOR164C homolog); 78.2 44 0.0015 31.2 25.2 136 264-406 134-296 (336)
265 1wy6_A Hypothetical protein ST 74.9 11 0.00039 30.4 7.4 53 208-260 101-153 (172)
266 1wy6_A Hypothetical protein ST 71.5 39 0.0013 27.3 10.0 56 331-387 99-154 (172)
267 3iqu_A 14-3-3 protein sigma; s 69.3 60 0.002 28.6 16.9 42 234-275 10-52 (236)
268 2br9_A 14-3-3E, 14-3-3 protein 66.9 67 0.0023 28.2 17.8 44 233-276 6-50 (234)
269 2npm_A 14-3-3 domain containin 64.1 80 0.0028 28.2 19.7 47 374-420 172-226 (260)
270 3ax2_A Mitochondrial import re 63.7 19 0.00066 25.4 5.8 33 236-268 21-53 (73)
271 1o9d_A 14-3-3-like protein C; 63.6 82 0.0028 28.1 19.7 44 233-276 9-55 (260)
272 3lpz_A GET4 (YOR164C homolog); 63.3 97 0.0033 28.8 21.4 77 299-386 134-215 (336)
273 3uzd_A 14-3-3 protein gamma; s 62.0 86 0.0029 27.8 17.6 44 233-276 5-49 (248)
274 4gq2_M Nucleoporin NUP120; bet 61.5 92 0.0031 33.6 13.7 33 260-293 834-866 (950)
275 4gq2_M Nucleoporin NUP120; bet 61.4 54 0.0018 35.4 11.8 91 207-302 819-933 (950)
276 3lvg_A Clathrin heavy chain 1; 61.3 0.0019 6.6E-08 63.5 -20.5 113 299-413 197-325 (624)
277 2o8p_A 14-3-3 domain containin 61.2 84 0.0029 27.4 20.6 56 331-386 133-196 (227)
278 3esl_A Checkpoint serine/threo 60.9 79 0.0027 27.1 12.9 118 214-355 8-147 (202)
279 2w2u_A Hypothetical P60 katani 57.3 21 0.00072 25.8 5.3 18 334-351 30-47 (83)
280 4ady_A RPN2, 26S proteasome re 56.3 63 0.0022 34.7 10.9 203 202-414 380-616 (963)
281 2v6y_A AAA family ATPase, P60 55.7 23 0.00078 25.6 5.3 18 334-351 22-39 (83)
282 2wvi_A Mitotic checkpoint seri 52.4 85 0.0029 25.9 8.9 48 286-355 79-128 (164)
283 3esl_A Checkpoint serine/threo 51.4 1.2E+02 0.0039 26.0 14.5 63 358-422 81-145 (202)
284 4a1g_A Mitotic checkpoint seri 49.4 1E+02 0.0036 25.0 9.1 45 377-421 84-130 (152)
285 2crb_A Nuclear receptor bindin 48.6 31 0.0011 25.4 4.9 27 233-259 16-42 (97)
286 3t5x_A PCI domain-containing p 48.3 40 0.0014 28.9 6.7 34 233-266 15-48 (203)
287 1om2_A Protein (mitochondrial 45.5 27 0.00092 26.0 4.3 31 236-266 24-54 (95)
288 3t5x_A PCI domain-containing p 43.1 54 0.0018 28.0 6.7 26 331-356 22-47 (203)
289 1wfd_A Hypothetical protein 15 42.5 47 0.0016 24.5 5.3 17 335-351 27-43 (93)
290 2cfu_A SDSA1; SDS-hydrolase, l 42.2 87 0.003 32.2 9.2 49 232-280 449-497 (658)
291 1om2_A Protein (mitochondrial 41.5 62 0.0021 24.0 5.7 25 331-355 28-52 (95)
292 3ax2_A Mitochondrial import re 41.4 71 0.0024 22.4 5.8 28 362-390 22-49 (73)
293 2wpv_A GET4, UPF0363 protein Y 41.3 2.1E+02 0.0072 26.2 20.6 81 264-350 132-215 (312)
294 3t5v_B Nuclear mRNA export pro 41.3 1.2E+02 0.0042 29.4 9.6 60 331-391 184-254 (455)
295 2crb_A Nuclear receptor bindin 40.9 43 0.0015 24.7 4.6 24 360-384 18-41 (97)
296 3re2_A Predicted protein; meni 40.0 2E+02 0.0067 27.2 10.0 66 196-261 253-325 (472)
297 2o8p_A 14-3-3 domain containin 39.9 1.9E+02 0.0064 25.2 10.2 53 244-296 137-197 (227)
298 2ijq_A Hypothetical protein; s 38.9 1.6E+02 0.0054 24.2 8.5 60 236-296 36-104 (161)
299 2ijq_A Hypothetical protein; s 38.1 1.2E+02 0.0042 24.8 7.7 59 361-420 36-103 (161)
300 2cpt_A SKD1 protein, vacuolar 38.0 50 0.0017 25.5 5.1 17 335-351 30-46 (117)
301 3lxu_X Tripeptidyl-peptidase 2 36.6 5E+02 0.017 29.1 17.0 63 354-419 1281-1343(1354)
302 2v6x_A Vacuolar protein sortin 36.6 67 0.0023 23.0 5.3 17 335-351 25-41 (85)
303 2w2u_A Hypothetical P60 katani 35.3 63 0.0021 23.3 4.9 16 243-258 30-45 (83)
304 3t5v_B Nuclear mRNA export pro 35.1 70 0.0024 31.2 6.7 61 205-265 183-254 (455)
305 4a1g_A Mitotic checkpoint seri 34.7 1.5E+02 0.005 24.1 7.6 81 217-304 47-138 (152)
306 4a5x_A MITD1, MIT domain-conta 34.5 67 0.0023 23.3 5.0 19 334-352 27-45 (86)
307 2v6y_A AAA family ATPase, P60 33.8 55 0.0019 23.5 4.4 16 243-258 22-37 (83)
308 2rpa_A Katanin P60 ATPase-cont 33.5 39 0.0013 24.1 3.4 27 235-261 15-41 (78)
309 2p58_C Putative type III secre 31.5 1.7E+02 0.0058 22.1 7.2 45 331-381 48-92 (116)
310 3re2_A Predicted protein; meni 31.4 1.5E+02 0.0051 27.9 7.7 43 342-385 276-323 (472)
311 3u84_A Menin; MLL, JUND, ledgf 30.2 1.5E+02 0.0051 28.5 7.6 63 197-260 276-346 (550)
312 3u84_A Menin; MLL, JUND, ledgf 29.5 3.2E+02 0.011 26.3 9.7 44 342-386 298-346 (550)
313 4a5x_A MITD1, MIT domain-conta 29.5 88 0.003 22.6 4.9 17 243-259 27-43 (86)
314 2wvi_A Mitotic checkpoint seri 28.9 2.4E+02 0.0082 23.1 9.1 48 251-299 79-128 (164)
315 4b4t_O 26S proteasome regulato 28.4 3.3E+02 0.011 25.7 10.2 89 207-295 85-197 (393)
316 2rpa_A Katanin P60 ATPase-cont 28.1 36 0.0012 24.3 2.4 27 201-227 15-41 (78)
317 2uwj_G Type III export protein 26.7 1.7E+02 0.0056 22.1 5.9 45 331-381 47-91 (115)
318 2cfu_A SDSA1; SDS-hydrolase, l 26.6 2E+02 0.0067 29.5 8.8 48 358-406 450-497 (658)
319 2v6x_A Vacuolar protein sortin 26.1 1.1E+02 0.0037 21.9 4.9 18 243-260 24-41 (85)
320 1wfd_A Hypothetical protein 15 25.6 1.1E+02 0.0037 22.4 4.9 31 214-259 12-42 (93)
321 2cwy_A Hypothetical protein TT 25.4 2E+02 0.0069 21.0 7.1 19 331-351 49-67 (94)
322 2cpt_A SKD1 protein, vacuolar 24.8 99 0.0034 23.8 4.7 16 244-259 30-45 (117)
323 2dl1_A Spartin; SPG20, MIT, st 23.3 55 0.0019 25.3 2.8 32 374-420 19-50 (116)
324 3bu8_A Telomeric repeat-bindin 22.5 3.1E+02 0.011 23.7 7.6 41 331-371 122-162 (235)
325 4gq4_A Menin; tumor suppressor 22.0 5.3E+02 0.018 24.7 10.8 79 197-275 261-352 (489)
326 2d2s_A Exocyst complex compone 20.7 4.2E+02 0.014 23.0 9.5 26 358-386 137-162 (235)
327 4aez_C MAD3, mitotic spindle c 20.0 4.3E+02 0.015 22.8 10.5 105 283-388 51-180 (223)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5.5e-28 Score=238.02 Aligned_cols=250 Identities=15% Similarity=0.216 Sum_probs=216.4
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++++...+..++.+.+ +....+..+|.++...|++++|+.+|+++++.+|++..+|..+|.++...|++++|+..|++
T Consensus 116 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 116 DMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp CSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55566677777777777 67788888888888888888888888888888888888888888888888888889888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++++|.+..++..+|.++...+. +++|+..|++++.++|++..++..+|.++...|++++|+..+++++..
T Consensus 195 al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 273 (388)
T 1w3b_A 195 AVTLDPNFLDAYINLGNVLKEARI-FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 888888888888888888888764 888999999988888888888888898888899888888888877764
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.++...|++++|+.+|+++++.+|.++.++..+|.++...|+ +++|+..|++++++.|++..++..+|.++.+.
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 677888999999999999999999989999999999998888 99999999999999999888999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh
Q 013821 406 EEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 406 g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
|++++|+..|++++++.|++..+..
T Consensus 353 g~~~~A~~~~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRISPTFADAYS 377 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999999999888776554
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.5e-28 Score=237.08 Aligned_cols=250 Identities=17% Similarity=0.108 Sum_probs=226.9
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++++..++.+++.+++ +...+|.++|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44567777888888888 78888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------- 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 330 (436)
+++.+|.+..+|..+|.++...++ +++|+..|+++++++|++..++..+|.++...|++++|+..+.+.+..
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 161 AIETQPNFAVAWSNLGCVFNAQGE-IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 999999999999999999888874 999999999999999999999999999999999999999998877765
Q ss_pred -----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 013821 331 -----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET 405 (436)
Q Consensus 331 -----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 405 (436)
.++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|++++++.|.+..++..++.++...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 778899999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHh
Q 013821 406 EEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 406 g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
|++++|+..|++++++.|+......
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999999999988765443
No 3
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=7.5e-28 Score=218.94 Aligned_cols=199 Identities=19% Similarity=0.198 Sum_probs=178.8
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013821 277 WEL-----------HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 277 ~~~-----------~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
... ++ +++|+..|+++++++|++..++..+| .++...|++++|+..
T Consensus 84 ~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~lg----------------------~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 84 VALYRQAEDRERGKGY-LEQALSVLKDAERVNPRYAPLHLQRG----------------------LVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHTCSSHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHH
T ss_pred HHhhhhhhhhcccccC-HHHHHHHHHHHHHhCcccHHHHHHHH----------------------HHHHHcCChHHHHHH
Confidence 999 85 99999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
|+++++++ +++.++.++|.++..+|+ +++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++..
T Consensus 141 ~~~al~~~-~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 141 LKQALALE-DTPEIRSALAELYLSMGR-LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHC-CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHhcc-cchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999 999999999999999999 99999999999999999999999999999999999999999988753
No 4
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=222.11 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=234.4
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYN 256 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~ 256 (436)
+...+..++..++..++ .....+..++.++...|++++|+.+++++++.+|+++.++..+|.++...| ++++|+.+|+
T Consensus 37 ~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 115 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115 (330)
T ss_dssp CHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44577788888888888 677888889999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------
Q 013821 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------ 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------ 330 (436)
++++.+|.++.+|..+|.++...++ +++|+.+|+++++..|++..++..+|.++...|++++|...+.+++..
T Consensus 116 ~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 116 KATTLEKTYGPAWIAYGHSFAVESE-HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp HHHTTCTTCTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999985 999999999999999999999999999999999999999999987765
Q ss_pred ------hHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 331 ------LPIQSKGDLEGAEEYFSRAILAN---------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 331 ------~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~ 395 (436)
.++...|++++|+.+|+++++.. |....++..+|.++..+|+ +++|+.+|++++++.|++..++
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~ 273 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-YAEALDYHRQALVLIPQNASTY 273 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCSHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhCccchHHH
Confidence 88899999999999999999986 6778899999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 396 AAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 396 ~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
..+|.++..+|++++|+.+|++++++.|+......
T Consensus 274 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 308 (330)
T 3hym_B 274 SAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHH
Confidence 99999999999999999999999999998876554
No 5
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=9.5e-27 Score=227.08 Aligned_cols=227 Identities=10% Similarity=-0.014 Sum_probs=204.7
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|..+|..+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|.+..++..+|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHccCchHHHHHHHHHHHH--------------hHHH
Q 013821 279 LHRDQHRALTYFERAALAAPQDSNILAAY----------ACFLWEMEDDGEDDKAQEEHIQV--------------LPIQ 334 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~~~~~--------------~~~~ 334 (436)
.++ +++|+.+|++++++.|++..++..+ +.++...|++++|+..+.+.+.. .++.
T Consensus 146 ~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSH-QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTC-HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccc-HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 875 9999999999999998876666554 89999999999999999987765 7888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 414 (436)
..|++++|+.+|+++++.+|+++.+|..+|.++...|+ +++|+.+|+++++++|++..++..+|.++..+|++++|+..
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR-SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChh
Q 013821 415 SDQFQQVAPIRQG 427 (436)
Q Consensus 415 ~~~al~l~p~~~~ 427 (436)
|++++++.|....
T Consensus 304 ~~~al~~~~~~~~ 316 (365)
T 4eqf_A 304 FLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHhCcccCC
Confidence 9999999887544
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=9.9e-27 Score=229.51 Aligned_cols=236 Identities=12% Similarity=0.087 Sum_probs=204.6
Q ss_pred hcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH
Q 013821 189 GLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD-LYRAEDYYNHATMADPGDGE 267 (436)
Q Consensus 189 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 267 (436)
++.+.+ .+..+|..+|.++...|++++|+..|+++++++|++..+|..+|.++..+|+ +++|+.+|+++++++|++..
T Consensus 89 ai~~~p-~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 89 QIIYSD-KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp EECCCH-HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhCCh-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 455666 6778888888888888999999999999999999999999999999999996 99999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHH
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQS 335 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~ 335 (436)
+|+++|.++..+++ +++|+.+|+++++++|++..+|+++|.++..+|++++|+..+++++.. .++..
T Consensus 168 a~~~~g~~~~~~g~-~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 168 VWHHRRVLVEWLRD-PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999988888875 899999999999999999999999998888888888888888888776 66666
Q ss_pred -cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-
Q 013821 336 -KGDLEGA-----EEYFSRAILANPGDGEIMSQYAKLVWELH--HDHDKALCYFERAVQASPADSHVLAAYACFLWETE- 406 (436)
Q Consensus 336 -~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g- 406 (436)
.|.+++| +.+|+++++++|++..+|++++.++...| + +++|+..++++ +.+|++..++..+|.+|.++|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~-~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK-YPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG-CHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc-hHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 5555777 59999999999999999999999999887 5 89999999988 899999999999999999985
Q ss_pred -------C-hHHHHHHHHHH-HhhCCCChhH
Q 013821 407 -------E-DEDDSKSSDQF-QQVAPIRQGA 428 (436)
Q Consensus 407 -------~-~~eA~~~~~~a-l~l~p~~~~~ 428 (436)
+ +++|+++|+++ ++++|.....
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~ 355 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEY 355 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 2 58999999999 8999876543
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=1.1e-25 Score=217.07 Aligned_cols=250 Identities=12% Similarity=0.086 Sum_probs=229.9
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP---CHPLLLRNY------------AQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P---~~~~~~~~l------------a~~~ 242 (436)
+++.+..++..++.+.+ ....+|..+|.++...|++++|+.+|+++++.+| ++..++..+ |.++
T Consensus 52 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (359)
T 3ieg_A 52 KSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA 130 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888888888 7889999999999999999999999999999999 888888777 7899
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
...|++++|+..++++++.+|.++.++..+|.++...++ +++|+..++++++..|.+..++..+|.++...|++++|..
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE-PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999875 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCH
Q 013821 323 AQEEHIQV------------------------LPIQSKGDLEGAEEYFSRAILANPGDGE----IMSQYAKLVWELHHDH 374 (436)
Q Consensus 323 ~~~~~~~~------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~d~ 374 (436)
.+.+.+.. .++...|++++|+..|+++++..|++.. ++..+|.++...|+ +
T Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~ 288 (359)
T 3ieg_A 210 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK-P 288 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC-H
Confidence 99877665 3478899999999999999999999874 46679999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 375 DKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 375 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|+......
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999877544
No 8
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=8.1e-26 Score=219.96 Aligned_cols=245 Identities=10% Similarity=0.025 Sum_probs=221.6
Q ss_pred CCCChHH-HHHhhcCCCCCC---chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 013821 178 RPVSPPM-YLAMGLGISVPG---FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAED 253 (436)
Q Consensus 178 ~p~~a~~-~~~~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 253 (436)
+++.+.. ++..++.+.+.. ....+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 4456666 788888887732 246789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHHccCc
Q 013821 254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA----------------AYACFLWEMEDD 317 (436)
Q Consensus 254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~g~~ 317 (436)
+|+++++++|.++.++..+|.++...++ +++|+..|+++++..|.+...+. .++.++ ..|++
T Consensus 120 ~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 197 (368)
T 1fch_A 120 ALRRCLELKPDNQTALMALAVSFTNESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLF 197 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccH
Confidence 9999999999999999999999999875 99999999999999999877665 456666 89999
Q ss_pred hHHHHHHHHHHHH--------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821 318 GEDDKAQEEHIQV--------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 318 ~~A~~~~~~~~~~--------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~ 383 (436)
++|+..+.+.+.. .++...|++++|+.+|++++..+|+++.++..+|.++...|+ +++|+..|++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~ 276 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ-SEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 9999999877654 788899999999999999999999999999999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
+++++|++..++..+|.++..+|++++|+..|++++.+.|..
T Consensus 277 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999998876
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.6e-25 Score=211.36 Aligned_cols=234 Identities=13% Similarity=0.055 Sum_probs=220.6
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.+...+..+|..++..|++++|+.+|+++++.+|.+..++..++.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34457888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHH
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAE 343 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~ 343 (436)
+...++++++|+.+|+++++.+|.+..++..+|.++...|++++|+..+.+.+.. .++...|++++|+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 9999845999999999999999999999999999999999999999999988876 7888999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821 344 EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---------PADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~eA~~~ 414 (436)
.+|+++++.+|.++.++..+|.++...|+ +++|+.++++++... |....++..+|.++...|++++|+.+
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999 999999999999986 66678999999999999999999999
Q ss_pred HHHHHhhCCCChhHHh
Q 013821 415 SDQFQQVAPIRQGAVT 430 (436)
Q Consensus 415 ~~~al~l~p~~~~~~~ 430 (436)
|++++++.|.......
T Consensus 259 ~~~a~~~~~~~~~~~~ 274 (330)
T 3hym_B 259 HRQALVLIPQNASTYS 274 (330)
T ss_dssp HHHHHHHSTTCSHHHH
T ss_pred HHHHHhhCccchHHHH
Confidence 9999999998766543
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=3.8e-25 Score=229.59 Aligned_cols=253 Identities=13% Similarity=0.067 Sum_probs=211.4
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
++..++...+...+ ....+|..++.++...|++++|+.++++++...|++..++..+|.+|...|++++|+++|+++++
T Consensus 323 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 323 DVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444 34455555566666666666666666666666777788888899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013821 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
.+|.+..+|..++.++...++ +++|++.|+++++..|++..++..++.++...|++++|...+.+++..
T Consensus 402 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 480 (597)
T 2xpi_A 402 MDPQFGPAWIGFAHSFAIEGE-HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480 (597)
T ss_dssp HCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999998888875 999999999999999999999999999999999999999999887765
Q ss_pred --hHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 331 --LPIQSKGDLEGAEEYFSRAILA------NPGD-GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 --~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
.++.+.|++++|+++|+++++. +|++ ..+|..+|.++...|+ +++|+..|+++++.+|+++.++..++.+
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 7888999999999999999998 5664 7899999999999999 9999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhcC
Q 013821 402 LWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVYA 436 (436)
Q Consensus 402 ~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~ya 436 (436)
|...|++++|+++|++++++.|+...+.. .+++|+
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999887766 677663
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=5.4e-25 Score=212.21 Aligned_cols=250 Identities=13% Similarity=0.062 Sum_probs=227.3
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++++|..++..++...+ ..+.+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 18 ~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45578888999998888 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC---CCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821 258 ATMADP---GDGESWMQY------------AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 258 al~~~p---~~~~~~~~l------------a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
+++.+| .+..++..+ |.++...+ ++++|+.+|+++++..|.+..++..+|.++...|++++|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 175 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999 888888877 67777776 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHhcCCHHHHH
Q 013821 323 AQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ------------YAKLVWELHHDHDKAL 378 (436)
Q Consensus 323 ~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~~~g~d~~eA~ 378 (436)
.+.+.+.. .++...|++++|+..|+++++..|++..++.. +|.++...|+ +++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~ 254 (359)
T 3ieg_A 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDAT 254 (359)
T ss_dssp HHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 99977765 78889999999999999999999999887654 3788999999 99999
Q ss_pred HHHHHHHHhCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 379 CYFERAVQASPADSH----VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 379 ~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
..++++++..|++.. ++..+|.++...|++++|+..|++++++.|.......
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 999999999999874 4667999999999999999999999999998766443
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.2e-24 Score=217.63 Aligned_cols=245 Identities=12% Similarity=0.075 Sum_probs=138.7
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+|..++..++...+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.+|...|++++|+.+|+++++
T Consensus 44 ~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 44 DALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555544444 44555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hCCCC-------------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 261 ADPGD-------------------------------------------------GESWMQYAKLVWELHRDQHRALTYFE 291 (436)
Q Consensus 261 ~~p~~-------------------------------------------------~~~~~~la~~~~~~~~d~~~A~~~~~ 291 (436)
.+|.+ ..++..+|.++...++ +++|+.+|+
T Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~ 201 (450)
T 2y4t_A 123 SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGE-PRKAISDLK 201 (450)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-GGGGHHHHH
T ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 55554 4444444444444432 444444444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------------hHHHHcCCHHHHHHHHH
Q 013821 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------------LPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------~~~~~~g~~~~A~~~~~ 347 (436)
++++.+|.+..++..+|.++...|++++|+..+.+++.. .++...|++++|+.+|+
T Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444444444444444444444444433322 23455566666666666
Q ss_pred HHHHhCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821 348 RAILANPGDG----EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 348 ~al~~~p~~~----~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 423 (436)
++++..|.++ .++..+|.++...|+ +++|+..++++++++|+++.+|..+|.++...|++++|+..|++++++.|
T Consensus 282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 282 SVMKTEPSIAEYTVRSKERICHCFSKDEK-PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 6666666653 356666666666666 77777777777777777777777777777777777777777777777766
Q ss_pred CChhH
Q 013821 424 IRQGA 428 (436)
Q Consensus 424 ~~~~~ 428 (436)
+....
T Consensus 361 ~~~~~ 365 (450)
T 2y4t_A 361 NDQQI 365 (450)
T ss_dssp SCHHH
T ss_pred chHHH
Confidence 65544
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.6e-25 Score=219.59 Aligned_cols=228 Identities=13% Similarity=0.071 Sum_probs=208.1
Q ss_pred cCCCChHHHHHhhcCCCCCCch---hhhhhH------------HhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFD---DAGEVV------------DLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQL 241 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~---~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 241 (436)
.+++++..++..++.+.+ ... ..|..+ |.++...|++++|+.+|+++++..|.+..++..+|.+
T Consensus 108 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 186 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186 (450)
T ss_dssp TCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 356677777888888888 565 565554 6679999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HH
Q 013821 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY------------AC 309 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l------------a~ 309 (436)
|...|++++|+..|+++++.+|.++.++..+|.++...++ +++|+..|++++..+|++...+..+ +.
T Consensus 187 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 9999999999999999999988776 99
Q ss_pred HHHHccCchHHHHHHHHHHHH----------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 013821 310 FLWEMEDDGEDDKAQEEHIQV----------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD 373 (436)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d 373 (436)
++...|++++|+..+.+++.. .++...|++++|+.+++++++.+|+++.+|..+|.++...|+
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~- 344 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM- 344 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC-
Confidence 999999999999999977665 678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821 374 HDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 374 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
+++|+.+|+++++++|++..++..++.+....++
T Consensus 345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999988766543
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=2.8e-25 Score=216.14 Aligned_cols=240 Identities=11% Similarity=0.036 Sum_probs=224.7
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
++..+..++.+++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 79 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp CHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55578889999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchH
Q 013821 258 ATMADPGDGESWM----------------QYAKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGE 319 (436)
Q Consensus 258 al~~~p~~~~~~~----------------~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~ 319 (436)
++...|.+...+. .++.++ ..+ ++++|+.+|+++++.+|. +..++..+|.++...|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS-LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHH-HHH-HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc-cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999877665 466555 666 499999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 320 DDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 320 A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
|+..+.+.+.. .++...|++++|+.+|+++++++|.+..++..+|.++..+|+ +++|+.+|++++.+
T Consensus 236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~ 314 (368)
T 1fch_A 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-HREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 99999988876 788899999999999999999999999999999999999999 99999999999999
Q ss_pred CCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 388 SPAD-----------SHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 388 ~p~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
.|++ ..+|..++.++..+|++++|..+++++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9988 899999999999999999999999887765
No 15
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-24 Score=199.04 Aligned_cols=214 Identities=17% Similarity=0.132 Sum_probs=195.0
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-------GESWM 270 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 270 (436)
+..|..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+.++++++++.|.+ +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4678889999999999999999999999999 889999999999999999999999999999998876 78999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCC
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGD 338 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~ 338 (436)
.+|.++...++ +++|+.+|++++++.|. +.++...|++++|...+.+.+.. .++...|+
T Consensus 84 ~l~~~~~~~~~-~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGD-LKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccc-HHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999998875 99999999999998887 34555666677777777655443 78889999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 418 (436)
+++|+.+|+++++.+|.++.++..+|.++...|+ +++|+.+|+++++.+|+++.++..+|.++..+|++++|+..|+++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhhC
Q 013821 419 QQVA 422 (436)
Q Consensus 419 l~l~ 422 (436)
+++.
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9998
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=1e-24 Score=199.27 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=184.4
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 46777888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
.++ +++|+.+|+++++..|.+..++..+| .++...|++++|+.+++++++..|.+..
T Consensus 104 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 104 KEM-YKEAKDMFEKALRAGMENGDLFYMLG----------------------TVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp TTC-HHHHHHHHHHHHHHTCCSHHHHHHHH----------------------HHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred hcc-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 875 99999999999999999999999999 8889999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
++..+|.++...|+ +++|+..|+++++..|++..++..+|.++...|++++|+..|++++++.|+......
T Consensus 161 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 161 ARFQFGMCLANEGM-LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHHHHHHHHTC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999999999877654
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=1.2e-24 Score=207.46 Aligned_cols=224 Identities=17% Similarity=0.109 Sum_probs=185.0
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+..+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHccCchHHHHHHHHHHHH------------h
Q 013821 279 LHRDQHRALTYFERAALAAPQDSNILAAY--------------AC-FLWEMEDDGEDDKAQEEHIQV------------L 331 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~~~~~------------~ 331 (436)
.++ +++|+..|+++++..|.+...+..+ +. ++...|++++|...+.+.+.. .
T Consensus 102 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHN-ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp TTC-HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 764 7777777777777777776666655 54 566667777777777766554 7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q 013821 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 411 (436)
++...|++++|+.+++++++.+|++..++..+|.++...|+ +++|+..|+++++..|++..++..+|.++...|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR-PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 88899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 013821 412 SKSSDQFQQVAPI 424 (436)
Q Consensus 412 ~~~~~~al~l~p~ 424 (436)
+..|++++.+.|.
T Consensus 260 ~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 260 AKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCc
Confidence 9999999999888
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=1.1e-25 Score=219.49 Aligned_cols=241 Identities=13% Similarity=0.040 Sum_probs=217.2
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+..++.+++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.+|...|++++|+.+|++
T Consensus 80 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 158 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158 (365)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 56688899999999999 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHH
Q 013821 258 ATMADPGDGESWMQY----------AKLVWELHRDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 258 al~~~p~~~~~~~~l----------a~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
+++++|.+..++..+ |.++...++ +++|+.+|+++++.+|. ++.++..+|.++...|++++|+..+.
T Consensus 159 al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 237 (365)
T 4eqf_A 159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV-LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237 (365)
T ss_dssp HHHHCHHHHCC-------------------CCHH-HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhCccchHHHhhhccchHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999877666555 888888875 99999999999999999 99999999999999999999999999
Q ss_pred HHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---
Q 013821 326 EHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA--- 390 (436)
Q Consensus 326 ~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~--- 390 (436)
+.+.. .++...|++++|+.+|+++++++|+++.++.++|.++..+|+ +++|+.+|++++++.|+
T Consensus 238 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA-YREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHCC--
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccCC
Confidence 88876 888999999999999999999999999999999999999999 99999999999999887
Q ss_pred ---------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 391 ---------DSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 391 ---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
+..+|..++.++..+|+.+.+....++.+..
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 317 QQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp ----------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred CcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence 3578999999999999999998887765543
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=3.1e-25 Score=211.59 Aligned_cols=243 Identities=11% Similarity=0.014 Sum_probs=222.8
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++++..++..++...+ ....+|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 36 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114 (327)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45578888999988888 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHH--------------HH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHH
Q 013821 258 ATMADPGDGESWMQY--------------AK-LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDK 322 (436)
Q Consensus 258 al~~~p~~~~~~~~l--------------a~-~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 322 (436)
+++.+|.+...+..+ +. ++...++ +++|+.+++++++..|.+..++..+|.++...|++++|..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE-YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp HHHTSTTTTTC--------------------CCTTSHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 999999988887777 65 5666664 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 323 AQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 323 ~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
.+.+.+.. .++...|++++|+.+|+++++..|.+..++..+|.++..+|+ +++|+..|++++...|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ-YDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCc
Confidence 99988776 788899999999999999999999999999999999999999 99999999999999999
Q ss_pred ------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821 391 ------------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 391 ------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 423 (436)
+..++..++.++..+|++++|...++++++..|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 273 GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999998877644
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=2.2e-24 Score=189.68 Aligned_cols=170 Identities=15% Similarity=0.130 Sum_probs=104.7
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..|.++|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (436)
..++ ++.|+..+.+++.++|.+..++..+| .++..+|++++|+.+|+++++++|.++
T Consensus 85 ~~~~-~~~a~~~~~~a~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 85 MIDE-KQAAIDALQRAIALNTVYADAYYKLG----------------------LVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HcCC-HHHHHHHHHHHHHhCccchHHHHHHH----------------------HHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 5543 66666666666666666666666666 555556666666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~ 391 (436)
.+|+++|.++..+|+ +++|+.+|+++++++|++
T Consensus 142 ~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGL-RDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTHHH
T ss_pred hHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCccC
Confidence 666666666666666 666666666666666553
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=6e-24 Score=186.85 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=166.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
+++.+|+.+|.+|..+|++++|+..|+++++++|+++.++..+|.++...++ +++|+..+++++...|++..++..+|
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~- 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL-PNDAIESLKKFVVLDTTSAEAYYILG- 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCCHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCchhHHHHHHHH-
Confidence 5678999999999999999999999999999999999999999999999985 99999999999999999999999999
Q ss_pred HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821 310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p 389 (436)
.++...++++.|+..+.+++..+|.+..++..+|.++..+|+ +++|+..|+++++++|
T Consensus 81 ---------------------~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 81 ---------------------SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISIKP 138 (184)
T ss_dssp ---------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT
T ss_pred ---------------------HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHhcc
Confidence 888899999999999999999999999999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 390 ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 390 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
.++.++..+|.++..+|++++|+..|+++++++|+.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999998864
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=2.4e-24 Score=195.71 Aligned_cols=177 Identities=16% Similarity=0.063 Sum_probs=168.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...++ +++|+..|+++++++|++..++..+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL-VNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999875 99999999999999999999999999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 013821 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSK-----------GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKA 377 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA 377 (436)
.++... |++++|+..|+++++++|+++.++.++|.++..+|+ +++|
T Consensus 81 ----------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A 137 (217)
T 2pl2_A 81 ----------------------EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE-RDKA 137 (217)
T ss_dssp ----------------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHH
T ss_pred ----------------------HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHHH
Confidence 666666 999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 378 LCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 378 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
+..|+++++++ +++.++..+|.++..+|++++|+..|++++++.|.+.....
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 189 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRV 189 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999 99999999999999999999999999999999999877654
No 23
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=1.2e-23 Score=193.90 Aligned_cols=208 Identities=16% Similarity=0.164 Sum_probs=199.6
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 278 ELHRDQHRALTYFERAAL--AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
..++ +++|+.+|+++++ ..|.+..++..+| .++...|++++|+.+|+++++..|.
T Consensus 117 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 117 EQKR-YEEAYQRLLEASQDTLYPERSRVFENLG----------------------LVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp HTTC-HHHHHHHHHHHTTCTTCTTHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHhH-HHHHHHHHHHHHhCccCcccHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 9875 9999999999999 8888999999999 8889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013821 356 DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 429 (436)
+..++..+|.++..+|+ +++|+.+++++++..|.+..++..++.++...|++++|..++++++++.|......
T Consensus 174 ~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 174 QPSVALEMADLLYKERE-YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999876654
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=2e-23 Score=216.67 Aligned_cols=253 Identities=12% Similarity=0.074 Sum_probs=232.9
Q ss_pred CCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 179 PVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 179 p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
.+++..++...+.. + .+...|..+|.++.+.|++++|+.+|+++++.+|++..++..++.++...|++++|+..++++
T Consensus 288 ~~~A~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 288 LRRAEDYLSSINGL-E-KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHHTSTTG-G-GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC-C-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566777777666 3 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------
Q 013821 259 TMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------- 330 (436)
Q Consensus 259 l~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------- 330 (436)
++..|.+..++..+|.+|...++ +++|+++|+++++.+|.+..+|..++.++...|++++|+..+++++..
T Consensus 366 ~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 444 (597)
T 2xpi_A 366 VDRHPEKAVTWLAVGIYYLCVNK-ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444 (597)
T ss_dssp HHHCTTSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred HhhCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence 99999999999999999999975 999999999999999999999999999999999999999999987765
Q ss_pred ----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHH
Q 013821 331 ----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA------SPAD-SHVLAAYA 399 (436)
Q Consensus 331 ----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~------~p~~-~~~~~~la 399 (436)
.++...|++++|+++|+++++..|.++.+|..+|.++...|+ +++|+.+|+++++. +|++ ..+|..++
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 778899999999999999999999999999999999999999 99999999999998 6664 78999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hhhhc
Q 013821 400 CFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TANVY 435 (436)
Q Consensus 400 ~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a~~y 435 (436)
.++.+.|++++|++.|++++++.|....... .+++|
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999999999999999998765544 44443
No 25
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=4.6e-23 Score=185.60 Aligned_cols=211 Identities=15% Similarity=0.119 Sum_probs=199.8
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+..|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++..+|.+..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013821 276 VWEL-HRDQHRALTYFERAAL--AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 276 ~~~~-~~d~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+... ++ +++|+.+|+++++ ..|.+..++..+| .++...|++++|+.+|+++++.
T Consensus 86 ~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 86 LCGRLNR-PAESMAYFDKALADPTYPTPYIANLNKG----------------------ICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHTTTCC-HHHHHHHHHHHHTSTTCSCHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCc-HHHHHHHHHHHHcCcCCcchHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHh
Confidence 9988 75 9999999999999 6677789999999 8889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 353 NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP-ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
.|.+..++..+|.++...|+ +++|+..+++++...| .+..++..++.++...|+.++|..+++.+....|+......
T Consensus 143 ~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 143 QPQFPPAFKELARTKMLAGQ-LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp STTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999 9999999999999999 99999999999999999999999999999999998877654
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=3.1e-24 Score=199.91 Aligned_cols=230 Identities=11% Similarity=0.072 Sum_probs=178.8
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD----GESWMQYAK 274 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 274 (436)
..+...|.+++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++ .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777 3332 344777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHH
Q 013821 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGA 342 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A 342 (436)
++...++ +++|+.+|+++++.+|.+..++..+|.++...|++++|+..+.+++.. ......+++++|
T Consensus 83 ~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQ-DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777664 777777777777777777777777777777777777777777644432 355566799999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHCCChHHHH
Q 013821 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHD--HDKALCYFERAVQAS---PA-----DSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d--~~eA~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~eA~ 412 (436)
+.+|+++++.+|++..++..+|.++..+|++ +++|+..|++++++. |+ ...++..+|.++...|++++|+
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999998752 567999999999886 54 2368899999999999999999
Q ss_pred HHHHHHHhhCCCChhHHh
Q 013821 413 KSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 413 ~~~~~al~l~p~~~~~~~ 430 (436)
.+|+++++++|+...+..
T Consensus 242 ~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCccHHHHHH
Confidence 999999999999887655
No 27
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.6e-23 Score=214.09 Aligned_cols=246 Identities=15% Similarity=0.086 Sum_probs=218.3
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+++.|..++..++.+++ .++.+|.++|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 39 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 478899999999999999 7999999999999999999999999999999999999999999999999999888877552
Q ss_pred --------------------------------------------------------------------------------
Q 013821 257 -------------------------------------------------------------------------------- 256 (436)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (436)
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence
Q ss_pred -----------------------------HHHHhCCCCHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 257 -----------------------------HATMADPGDGE-------SWMQYAKLVWELHRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 257 -----------------------------~al~~~p~~~~-------~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~ 300 (436)
++++.+|.++. ++..+|.++...+ ++++|+.+|+++++.+|+
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~~~- 275 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN-NLLDAQVLLQESINLHPT- 275 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCC-
Confidence 33344566544 4666777777776 499999999999999999
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVW 368 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 368 (436)
..++..+|.++...|++++|+..+.+.+.. .++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999988776 78889999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 369 ELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 369 ~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
..|+ +++|+.+|+++++..|+++.++..+|.++...|++++|+..|++++.+.|...
T Consensus 356 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 356 KQGK-FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 9999 99999999999999999999999999999999999999999999999876543
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.4e-23 Score=212.79 Aligned_cols=249 Identities=13% Similarity=0.099 Sum_probs=225.5
Q ss_pred CCCChHHHHHhhcCCCCCCch-------hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFD-------DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYR 250 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 250 (436)
++..+..++..++...+ ... .++..+|.++...|++++|+.+|+++++.+|+ ..++..+|.++...|++++
T Consensus 217 ~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHH
Confidence 34467778888888888 443 46888899999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821 251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
|+.+|+++++.+|.++.++..+|.++...++ +++|+..|+++++.+|++..++..+|.++...|++++|...+.+++..
T Consensus 295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQD-YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999875 999999999999999999999999999999999999999999988876
Q ss_pred ------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh----------cCCHHHHHHHHH
Q 013821 331 ------------LPIQSKGDLEGAEEYFSRAILANPGDGE------IMSQYAKLVWEL----------HHDHDKALCYFE 382 (436)
Q Consensus 331 ------------~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~d~~eA~~~~~ 382 (436)
.++...|++++|+.+|+++++..|.+.. .+..+|.++..+ |+ +++|+.+|+
T Consensus 374 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~A~~~~~ 452 (537)
T 3fp2_A 374 FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK-FNAAIKLLT 452 (537)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH-HHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH-HHHHHHHHH
Confidence 8889999999999999999999876543 366778899998 99 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 383 RAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 383 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
++++.+|++..++..+|.++..+|++++|+..|++++++.|.......
T Consensus 453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999999999999999998777544
No 29
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=7.1e-24 Score=215.44 Aligned_cols=211 Identities=15% Similarity=0.004 Sum_probs=196.8
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDS-AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
.+...+.......+ ..+..|..+|.++...|++ ++|+.+|+++++.+|+++.+|..+|.+|...|++++|+.+|++++
T Consensus 86 ~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 86 KTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445666666666 7889999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821 260 MADPGDGESWMQYAKLVWEL---------HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~---------~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
+++|+ ..++..+|.++... ++ +++|+.+|+++++++|++..+|..+|
T Consensus 165 ~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg---------------------- 220 (474)
T 4abn_A 165 THCKN-KVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQMDVLDGRSWYILG---------------------- 220 (474)
T ss_dssp TTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------
T ss_pred hhCCC-HHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------
Confidence 99999 79999999999988 75 99999999999999999999999999
Q ss_pred hHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 331 LPIQSK--------GDLEGAEEYFSRAILANP---GDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 331 ~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la 399 (436)
.++... |++++|+.+|+++++++| .++.+|+++|.++..+|+ +++|+..|+++++++|++..++..++
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES-YGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 666666 889999999999999999 999999999999999999 99999999999999999999999999
Q ss_pred HHHHHCCChHHHHHHHHH
Q 013821 400 CFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 400 ~~~~~~g~~~eA~~~~~~ 417 (436)
.++..+|++++|++.+.+
T Consensus 300 ~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999986643
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=1.2e-23 Score=207.58 Aligned_cols=226 Identities=10% Similarity=0.078 Sum_probs=206.6
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD-SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYY 255 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 255 (436)
.+++.|...+.+++.+++ .+..+|.++|.++...|+ +++|+.+|+++++++|++..+|.++|.++..+|++++|+..|
T Consensus 111 g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp CCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 367789999999999999 899999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCchHH-----HHHHHHHHH
Q 013821 256 NHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE-MEDDGED-----DKAQEEHIQ 329 (436)
Q Consensus 256 ~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~~~~ 329 (436)
+++++++|++..+|+.+|.++..+++ +++|+.+|+++++++|++..+|+++|.++.. .|..++| +..+.+++.
T Consensus 190 ~kal~ldP~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 190 ADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985 9999999999999999999999999999999 5554888 477777776
Q ss_pred H------------hHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------CCHHHHHHHHHHH-HH
Q 013821 330 V------------LPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH--------HDHDKALCYFERA-VQ 386 (436)
Q Consensus 330 ~------------~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~d~~eA~~~~~~a-l~ 386 (436)
. .++...| ++++|++.++++ +.+|++..++..+|.++..+| +.+++|+.+|+++ ++
T Consensus 269 l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 269 LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 6 4555667 699999999998 999999999999999999985 2158999999999 99
Q ss_pred hCCCCHHHHHHHHHHHHHC
Q 013821 387 ASPADSHVLAAYACFLWET 405 (436)
Q Consensus 387 ~~p~~~~~~~~la~~~~~~ 405 (436)
++|.....|..++..+..+
T Consensus 348 ~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 348 KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TCGGGHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 31
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=5e-23 Score=187.50 Aligned_cols=210 Identities=12% Similarity=0.092 Sum_probs=179.1
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP-CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
++..+..+|.++...|++++|+.+|+++++.+| .+..+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 457899999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ +++|+.+|+++++++|++...+..++.++...| .++...|++++|+.+|+++++++|+
T Consensus 86 ~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---------------~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 86 YRDMKN-NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEG---------------QKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh---------------HHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999975 999999999999999999976666665555555 8999999999999999999999999
Q ss_pred --CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 356 --DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 356 --~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
++.++.++|.++..+|+ ..++++..+.+.+...+ .+......+.+++|+.+|++++++.|+......
T Consensus 150 ~~~~~~~~~l~~~~~~~~~------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 218 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNGA------DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQ 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH------HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 99999999999988776 34555666665554333 233344556677888888888888877766544
No 32
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=1.8e-23 Score=221.64 Aligned_cols=171 Identities=18% Similarity=0.233 Sum_probs=115.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
.|++++++.++|.+|..+|++++|+.+|+++++++|+++.+++++|.+|..+++ +++|+.+|+++++++|++..+++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~-~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 456666666666666666666666666666666666666666666666666654 6666666666666666666666666
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
| .++..+|++++|+++|+++++++|+++.+++++|.++..+|+ +++|+..|++++++
T Consensus 84 g----------------------~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 84 G----------------------NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIASYRTALKL 140 (723)
T ss_dssp H----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred H----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 6 666666666666666666666666666666666666666666 66666666666666
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 388 SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 388 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
+|++..++.++|.++..+|++++|++.|++++++.
T Consensus 141 ~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 141 KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 66666666666666666666666666666666654
No 33
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1e-23 Score=214.02 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=230.0
Q ss_pred CCChHHHHHhhcC-----C--CCC------CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821 179 PVSPPMYLAMGLG-----I--SVP------GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK 245 (436)
Q Consensus 179 p~~a~~~~~~~~~-----~--~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 245 (436)
++.+..++..++. + .+. .....|..+|.++...|++++|+.+|+++++.+|. ..++..+|.++...
T Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHC
Confidence 4466677777776 4 221 33578899999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
|++++|+..|++++..+|.+..++..+|.++...++ +++|+..|+++++..|.+..++..+|.++...|++++|+..+.
T Consensus 284 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN-YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC-TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999875 9999999999999999999999999999999999999999999
Q ss_pred HHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---hcCCHHHHHHHHHHH
Q 013821 326 EHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGE------IMSQYAKLVWE---LHHDHDKALCYFERA 384 (436)
Q Consensus 326 ~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~d~~eA~~~~~~a 384 (436)
+.+.. .++...|++++|+.+|++++...|.+.. ++..+|.++.. .|+ +++|+..|+++
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATNLLEKA 441 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHH
Confidence 88776 7888999999999999999999998855 99999999999 999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 385 VQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 385 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
+..+|++..++..+|.++...|++++|+..|++++++.|.......
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 9999999999999999999999999999999999999998766543
No 34
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=2.9e-23 Score=220.05 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=166.2
Q ss_pred CCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 192 ISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 192 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
-.| +.+.++.++|.++.++|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|+++.+|++
T Consensus 4 s~P-~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344 5678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
+|.++..+++ +++|+++|+++++++|++..++.++| .+|..+|++++|+.+|++|++
T Consensus 83 Lg~~l~~~g~-~~~A~~~~~kAl~l~P~~~~a~~~Lg----------------------~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 83 MGNTLKEMQD-VQGALQCYTRAIQINPAFADAHSNLA----------------------SIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHH
Confidence 9999999985 99999999999999999999999999 899999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
++|+++.++.++|.++..+|+ +++|++.+++++++.|+
T Consensus 140 l~P~~~~a~~~L~~~l~~~g~-~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 140 LKPDFPDAYCNLAHCLQIVCD-WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTC-CTTHHHHHHHHHHHHHH
T ss_pred hCCCChHHHhhhhhHHHhccc-HHHHHHHHHHHHHhChh
Confidence 999999999999999999999 99999999999988654
No 35
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.2e-22 Score=202.95 Aligned_cols=248 Identities=13% Similarity=0.097 Sum_probs=176.6
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.++++|..++..++..++ ++..|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 20 g~~~~A~~~~~~al~~~p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELKE--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp SCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCc--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356667777777777665 366777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCC-----------------------------------------------------------------------
Q 013821 257 HATMADPGD----------------------------------------------------------------------- 265 (436)
Q Consensus 257 ~al~~~p~~----------------------------------------------------------------------- 265 (436)
+++...|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 777776522
Q ss_pred --------HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHccCchHH
Q 013821 266 --------GESWMQYAKLVWE---LHRDQHRALTYFERAAL-----A--A-------PQDSNILAAYACFLWEMEDDGED 320 (436)
Q Consensus 266 --------~~~~~~la~~~~~---~~~d~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A 320 (436)
..+++.+|.+++. .+ ++++|+.+|+++++ + + |.+..++..+|.++...|++++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPE-SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTT-HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 5555666655554 44 47777777777777 4 3 33456667777777777777777
Q ss_pred HHHHHHHHHH-----------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821 321 DKAQEEHIQV-----------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 321 ~~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p 389 (436)
...+.+.+.. .++...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..|+++++..|
T Consensus 257 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 257 HEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN-YDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC-TTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCh
Confidence 7777765543 566677777777777777777777777777777777777777 7777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821 390 ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 390 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~ 428 (436)
.+..++..+|.++...|++++|+..|++++...|.....
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 374 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHH
Confidence 777777777777777777777777777777777765543
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=2.5e-22 Score=183.33 Aligned_cols=204 Identities=14% Similarity=0.159 Sum_probs=187.3
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+..++..++...+ .....+..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++
T Consensus 38 ~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 38 DYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116 (243)
T ss_dssp ----CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 55677778889999888 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG 337 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g 337 (436)
+++..|.+..++..+|.++...++ +++|+.+|+++++..|++..++..+| .++...|
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~ 173 (243)
T 2q7f_A 117 ALRAGMENGDLFYMLGTVLVKLEQ-PKLALPYLQRAVELNENDTEARFQFG----------------------MCLANEG 173 (243)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCccHHHHHHHH----------------------HHHHHcC
Confidence 999999999999999999999875 99999999999999999999999999 8888999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
++++|+.+|+++++..|.+..++..+|.++...|+ +++|+.+|+++++++|++..++..++.+....+
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN-REKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999 999999999999999999999998887765544
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=1.9e-22 Score=191.83 Aligned_cols=205 Identities=9% Similarity=-0.016 Sum_probs=151.3
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDE--YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.++..++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+..++..+|.++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 44455555566666666666666666554 366666666666666666666666666655 55666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
..+|+ +++|++.|+++++.+|++.......+.+ .++...|++++|+.+|+++++.+|++
T Consensus 141 ~~~g~-~~~A~~~l~~~~~~~p~~~~~~l~~a~~--------------------~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 141 LKLDR-LDLARKELKKMQDQDEDATLTQLATAWV--------------------SLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH--------------------HHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred HHCCC-HHHHHHHHHHHHhhCcCcHHHHHHHHHH--------------------HHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 65553 6666666666666666554332222210 22334589999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHhhCCCChhHHh
Q 013821 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED-DSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~l~p~~~~~~~ 430 (436)
+.+++++|.++..+|+ +++|+..|+++++++|+++.++.++|.++...|+.++ +.+++++++++.|++.....
T Consensus 200 ~~~~~~la~~~~~~g~-~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGR-WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999 9999999999999999999999999999999999987 56899999999999887554
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=2.9e-21 Score=180.70 Aligned_cols=218 Identities=12% Similarity=0.094 Sum_probs=198.7
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESWMQ 271 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (436)
+.+.++..+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 4567888999999999999999999999998 7888999999999999 999999999999999885 8999999
Q ss_pred HHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCchHHHHHHHHHHHH----------hHH
Q 013821 272 YAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWE----MEDDGEDDKAQEEHIQV----------LPI 333 (436)
Q Consensus 272 la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~~~ 333 (436)
+|.++.. .+ ++++|+.+|+++++. +++.++..+|.++.. .+++++|+..+++.+.. .++
T Consensus 80 lg~~~~~g~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQ-NTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCccc-CHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999888 76 599999999999988 489999999999999 99999999999987765 667
Q ss_pred HH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 013821 334 QS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE- 404 (436)
Q Consensus 334 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~- 404 (436)
.. .+++++|+.+|+++++. .++.+++.+|.++.. .++ +++|+.+|+++++..| +.++..+|.++..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN-FKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 77 89999999999999987 468999999999999 888 9999999999999876 7899999999999
Q ss_pred ---CCChHHHHHHHHHHHhhCCCC
Q 013821 405 ---TEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 405 ---~g~~~eA~~~~~~al~l~p~~ 425 (436)
.+++++|+++|++++++.|..
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999997753
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=9.4e-22 Score=198.20 Aligned_cols=251 Identities=14% Similarity=0.060 Sum_probs=191.8
Q ss_pred hcCCCChHHHHHhhcCC---------CCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC--------CCCHHHHHHH
Q 013821 176 IERPVSPPMYLAMGLGI---------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--------PCHPLLLRNY 238 (436)
Q Consensus 176 ~~~p~~a~~~~~~~~~~---------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~l 238 (436)
..++++|..++.+++.+ ++ ....+|.++|.++..+|++++|+.+|++++++. +..+.++..+
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~-~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEI-RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTT-TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 34667778888877655 22 345677888888888888888888888888752 3456777777
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821 239 AQLLQKK--GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 239 a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
|.++... ++|++|+.+|+++++++|+++.++..++.+++..+ +++++|++.|+++++++|++..++..++..+...
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 7777654 46888888888888888888888888887765543 2357788888888888888888887777666554
Q ss_pred ----cCchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------
Q 013821 315 ----EDDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-------- 370 (436)
Q Consensus 315 ----g~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------- 370 (436)
+++++|...+++.+.. .+|...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 4566777777766655 7788889999999999999999999988888888877542
Q ss_pred -----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 013821 371 -----------HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 371 -----------g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~ 428 (436)
+. +++|+..|+++++++|.+..++..+|.++...|++++|+.+|++++.+.|+....
T Consensus 303 ~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 303 ENGMYGKRKLLEL-IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp -----CHHHHHHH-HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 23 5678888888888888888888888999999999999999999999888765443
No 40
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=2.1e-22 Score=204.55 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=184.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYF 290 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~ 290 (436)
+.+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++++|.++.+|+.+|.+|+..++ +++|+.+|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD-VTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 5578899999999999999999999999999999999 999999999999999999999999999999985 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 291 ERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK---------GDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 291 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
+++++++|+ ..++..+| .++... |++++|+.+|+++++++|+++.+|+
T Consensus 161 ~~al~~~p~-~~~~~~lg----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 217 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLS----------------------MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY 217 (474)
T ss_dssp HHHHTTCCC-HHHHHHHH----------------------HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhhCCC-HHHHHHHH----------------------HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999 79999999 666666 9999999999999999999999999
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 362 QYAKLVWEL--------HHDHDKALCYFERAVQASP---ADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 362 ~la~~~~~~--------g~d~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
++|.++..+ |+ +++|+.+|+++++++| .++.+|.++|.++..+|++++|++.|++++++.|++..+..
T Consensus 218 ~lg~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~ 296 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKI-SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ 296 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhhccccch-HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999 99 9999999999999999 99999999999999999999999999999999999876543
No 41
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=6.2e-22 Score=180.21 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=148.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
+.++..++.+|.++...|++++|+..|+++++++| .+..+++.+|.++...++ +++|+.+|+++++.+|++..++..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK-YKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhCcchHHHHHHH
Confidence 55789999999999999999999999999999999 899999999999999975 9999999999999999999999999
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCHHHHHHH
Q 013821 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG-------EIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~d~~eA~~~ 380 (436)
| .++..+|++++|+.+|+++++++|+++ .++..+|.++..+|+ +++|+..
T Consensus 83 ~----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~ 139 (228)
T 4i17_A 83 S----------------------AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEEN 139 (228)
T ss_dssp H----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred H----------------------HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHH
Confidence 9 899999999999999999999999999 679999999999999 9999999
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHCCCh
Q 013821 381 FERAVQASPA--DSHVLAAYACFLWETEED 408 (436)
Q Consensus 381 ~~~al~~~p~--~~~~~~~la~~~~~~g~~ 408 (436)
|+++++++|+ +..++..+|.++...|+.
T Consensus 140 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 140 YKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999887765
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=1.5e-22 Score=188.46 Aligned_cols=223 Identities=9% Similarity=-0.030 Sum_probs=168.1
Q ss_pred CCCChHHHHHhhcCCCCC---CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVP---GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDY 254 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 254 (436)
+++.+..++..++...+. ..+..|..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 455677888888876432 34578888999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013821 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 334 (436)
|+++++.+|.+..++..+|.++...++ +++|+.+|+++++++|++......++ .. .
T Consensus 100 ~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~----------------------~~-~ 155 (275)
T 1xnf_A 100 FDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSLWLY----------------------LA-E 155 (275)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HH-H
T ss_pred HHHHHhcCccccHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HH-H
Confidence 999999999988999999988888874 99999999999999998886665554 22 3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHH
Q 013821 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA----DSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~e 410 (436)
..|++++|+..+++++...|.+...+. ++.++...++ .++|+..+++++...|. +..++..+|.++...|++++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSC-HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcC-HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 446777777777777777666654443 5555555556 66777777776655543 24666777777777777777
Q ss_pred HHHHHHHHHhhCCCCh
Q 013821 411 DSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 411 A~~~~~~al~l~p~~~ 426 (436)
|+..|++++.+.|...
T Consensus 234 A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 234 ATALFKLAVANNVHNF 249 (275)
T ss_dssp HHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHhCCchhH
Confidence 7777777777766443
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=8.6e-22 Score=188.40 Aligned_cols=220 Identities=16% Similarity=0.128 Sum_probs=200.3
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhh-------hCCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMP-------NFDDS-------AEAEEYYKRMID-EYPCHPLLLRNYAQLLQKK 245 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~-------~~g~~-------~~A~~~~~~al~-~~P~~~~~~~~la~~~~~~ 245 (436)
.+...|.+++...+ ..+..|..+|.++. ..|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 34 ~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45567889999888 79999999999876 45886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013821 246 GDLYRAEDYYNHATMADPGDGE-SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
|++++|+..|++++++.|.++. +|..+|.++...++ +++|+..|+++++..|....++...+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a---------------- 175 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAA---------------- 175 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCHHHHHHHH----------------
Confidence 9999999999999999999987 99999999998885 99999999999999999988877666
Q ss_pred HHHHHHhHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHH
Q 013821 325 EEHIQVLPIQ-SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA---SPA-DSHVLAAYA 399 (436)
Q Consensus 325 ~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~---~p~-~~~~~~~la 399 (436)
.+.. ..|++++|+.+|+++++.+|+++.+|..++.++..+|+ +++|+.+|++++.. .|+ ...+|..++
T Consensus 176 ------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 176 ------LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp ------HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred ------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4432 37999999999999999999999999999999999999 99999999999995 553 788999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 400 CFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 400 ~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
.++...|+.++|..++++++++.|+.
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999863
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=5.6e-22 Score=184.51 Aligned_cols=209 Identities=13% Similarity=-0.010 Sum_probs=182.3
Q ss_pred cCCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+++.+..++.+++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+
T Consensus 57 ~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 57 GLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp TCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 477788999999999998 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013821 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
++++++|.+......++.+ ...+ ++++|+..+++++...|.+...+. ++ .++...
T Consensus 136 ~a~~~~~~~~~~~~~~~~~-~~~~-~~~~A~~~~~~~~~~~~~~~~~~~-~~----------------------~~~~~~ 190 (275)
T 1xnf_A 136 AFYQDDPNDPFRSLWLYLA-EQKL-DEKQAKEVLKQHFEKSDKEQWGWN-IV----------------------EFYLGN 190 (275)
T ss_dssp HHHHHCTTCHHHHHHHHHH-HHHH-CHHHHHHHHHHHHHHSCCCSTHHH-HH----------------------HHHTTS
T ss_pred HHHHhCCCChHHHHHHHHH-HHhc-CHHHHHHHHHHHHhcCCcchHHHH-HH----------------------HHHHHh
Confidence 9999999999777766644 5555 599999999999999998866554 55 566678
Q ss_pred CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 013821 337 GDLEGAEEYFSRAILANPG----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 412 (436)
++.++|+..+++++...|. +..++..+|.++..+|+ +++|+.+|++++.++|++.. .++.++..+|++++|+
T Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD-LDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQ 266 (275)
T ss_dssp SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhH
Confidence 8889999999999877664 37899999999999999 99999999999999997643 4477888999999998
Q ss_pred HHH
Q 013821 413 KSS 415 (436)
Q Consensus 413 ~~~ 415 (436)
+.|
T Consensus 267 ~~~ 269 (275)
T 1xnf_A 267 DDL 269 (275)
T ss_dssp ---
T ss_pred HHH
Confidence 887
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-21 Score=179.58 Aligned_cols=197 Identities=13% Similarity=0.022 Sum_probs=187.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-------SNI 303 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-------~~~ 303 (436)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...++ +++|+.+|++++++.|++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE-YETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 46789999999999999999999999999999 999999999999999985 999999999999999887 799
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 013821 304 LAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALC 379 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~ 379 (436)
+..+|.++...|++++|+..+.+.+.. .++...|++++|+..+++++..+|.+..++..+|.++...|+ +++|+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~ 160 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD-WPNAVK 160 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC-HHHHHH
Confidence 999999999999999999999999987 788999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 380 YFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 380 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
+|++++..+|.++.++..+|.++...|++++|+..|++++.+.|.......
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 211 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI 211 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999999999999999999999999999999999999998766544
No 46
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=9.4e-22 Score=198.19 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=185.8
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhh---hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMP---NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYR 250 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~ 250 (436)
+++.|..+|.+++.+++ +++.++.++|.++. ..++.++|+..|+++++++|++..++..+|..+.. .+++++
T Consensus 153 ~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 34578888999999998 78888888887744 46778899999999999999999999888877654 467889
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------------
Q 013821 251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEME--------------- 315 (436)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------------- 315 (436)
|+.++++++..+|.+..++..+|.++...+. +++|+..|+++++.+|++..++..+|.++...+
T Consensus 232 a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDE-PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999988875 999999999999999999999999998876532
Q ss_pred ----CchHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHH-HhcCCHH
Q 013821 316 ----DDGEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANPGDGE---IMSQYAKLVW-ELHHDHD 375 (436)
Q Consensus 316 ----~~~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~-~~g~d~~ 375 (436)
.+++|+..+.+.+.. .++...|++++|+.+|++++.++|.+.. ++..+|.++. ..|+ ++
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 389 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC-ED 389 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC-HH
T ss_pred HHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC-HH
Confidence 234555555555544 7888999999999999999999887643 4566776554 5566 99
Q ss_pred HHHHHHHHHHHh------------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 013821 376 KALCYFERAVQA------------------------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 376 eA~~~~~~al~~------------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 429 (436)
+|+..|++++++ +|.++.++..+|.++..+|++++|+++|++++++.|..+.+.
T Consensus 390 ~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 390 KAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 999999988866 456667899999999999999999999999999988776654
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=3.3e-22 Score=186.11 Aligned_cols=225 Identities=11% Similarity=0.020 Sum_probs=195.1
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH----PLLLRNYAQLLQKKGDLYRAED 253 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~ 253 (436)
+++.+..++..++.+++ ....+|..+|.++...|++++|+.+|+++++ .|.+ ..++..+|.++...|++++|+.
T Consensus 18 ~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 95 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQ 95 (272)
T ss_dssp CHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 45578888999999988 7888999999999999999999999999999 4433 3569999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---
Q 013821 254 YYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--- 330 (436)
Q Consensus 254 ~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 330 (436)
+|+++++.+|.++.++..+|.++...++ +++|+.+|+++++.+|.+..++..+|......+++++|+..+.+.++.
T Consensus 96 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 96 QYQAAVDRDTTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999875 999999999999999999999999995555566999999999988776
Q ss_pred ---------hHHHHcCC---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 331 ---------LPIQSKGD---LEGAEEYFSRAILAN---PG-----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 331 ---------~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
.++...|+ +++|+..|++++++. |+ ...++..+|.++...|+ +++|+.+|+++++++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD-KVKADAAWKNILALDPT 253 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcc
Confidence 66777788 999999999999986 44 23789999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCC
Q 013821 391 DSHVLAAYACFLWETE 406 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g 406 (436)
++.++..++.+....+
T Consensus 254 ~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 254 NKKAIDGLKMKLEHHH 269 (272)
T ss_dssp CHHHHHHHC-------
T ss_pred HHHHHHHhhhhhcccc
Confidence 9999999888766544
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=4.9e-22 Score=196.45 Aligned_cols=250 Identities=11% Similarity=0.051 Sum_probs=204.5
Q ss_pred cCCCChHHHHHhhcCCCCCCch----hhhhhHHhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Q 013821 177 ERPVSPPMYLAMGLGISVPGFD----DAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKG 246 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g 246 (436)
.+++++..++..++.+.+ ... ..|..+|.++...|++++|+.+|+++++. .|....++..+|.++...|
T Consensus 62 g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 467788888888888877 443 57888999999999999999999999887 4666788889999999999
Q ss_pred CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhC------
Q 013821 247 DLYRAEDYYNHATMA------DPGDGESWMQYAKLVWELHRD-----------------QHRALTYFERAALAA------ 297 (436)
Q Consensus 247 ~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~d-----------------~~~A~~~~~~al~~~------ 297 (436)
++++|+.+|++++.+ .+....++..+|.++...+ + +++|+.+|++++++.
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999999887 4556778888998888876 6 888999988888764
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 013821 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD--- 356 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~--- 356 (436)
+....++..+|.++...|++++|+..+.+.+.. .++...|++++|+.+|++++.+.+..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 234557888899999999999998888876654 77888899999999999998887644
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 357 ---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 357 ---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
..++..+|.++..+|+ +++|+.+|++++.+.+.. ..++..+|.++..+|++++|+.+|++++++.+....
T Consensus 300 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHE-FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 6788889999999988 999999999988875432 358888999999999999999999999988776554
Q ss_pred HH
Q 013821 428 AV 429 (436)
Q Consensus 428 ~~ 429 (436)
..
T Consensus 379 ~~ 380 (411)
T 4a1s_A 379 XX 380 (411)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=190.94 Aligned_cols=246 Identities=9% Similarity=0.046 Sum_probs=145.1
Q ss_pred CCCChHHHHHhhcCCCCCCc----hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 013821 178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~ 247 (436)
+++.+..++..++.+.+ .. ...+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|+
T Consensus 24 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 102 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102 (406)
T ss_dssp CHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence 45556666666666555 23 245566666666666666666666666554 22334556666666666666
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh-----
Q 013821 248 LYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRD--------------------QHRALTYFERAALA----- 296 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d--------------------~~~A~~~~~~al~~----- 296 (436)
+++|+.++++++.+.|.. ..++..+|.++...+ + +++|+.+|++++++
T Consensus 103 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 181 (406)
T 3sf4_A 103 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG 181 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666666654432 335666666665554 4 66666666666655
Q ss_pred -CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013821 297 -APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD- 356 (436)
Q Consensus 297 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~- 356 (436)
.+....++..+|.++...|++++|...+.+++.. .++...|++++|+.+|++++.+.+..
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 2223445566666666666666666666654433 45556666666666666666665443
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 357 -----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
..++..+|.++...|+ +++|+.+|++++++.+.. ..++..+|.++..+|++++|+.+|++++++.+..
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666 666666666666654332 3456666666666666666666666666665444
Q ss_pred h
Q 013821 426 Q 426 (436)
Q Consensus 426 ~ 426 (436)
.
T Consensus 341 ~ 341 (406)
T 3sf4_A 341 G 341 (406)
T ss_dssp T
T ss_pred c
Confidence 3
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=8e-22 Score=193.66 Aligned_cols=228 Identities=10% Similarity=0.001 Sum_probs=203.1
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGD 265 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 265 (436)
.....+..+|.++...|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.++++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3456788999999999999999999999999999984 68999999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------chH
Q 013821 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMED--------------------DGE 319 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 319 (436)
..++..+|.++...++ +++|+.++++++++.|.. ..++..+|.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 7899999999999875 999999999999987653 5588999999999999 999
Q ss_pred HHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHH
Q 013821 320 DDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGDG------EIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 320 A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~d~~ 375 (436)
|+..+.+.+.. .++...|++++|+.+|++++++.+... .++.++|.++..+|+ ++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-hH
Confidence 99999876653 788899999999999999999866543 389999999999999 99
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 376 KALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 376 eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
+|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999987765 6788999999999999999999999999986544
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=5.9e-22 Score=195.89 Aligned_cols=226 Identities=12% Similarity=0.026 Sum_probs=203.6
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGE 267 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 267 (436)
...+..+|..+...|++++|+.+|+++++..|++. .++..+|.++...|++++|+.+|++++++ .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45667788999999999999999999999999987 58999999999999999999999999998 566788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC-----------------chHHHHHH
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALA------APQDSNILAAYACFLWEMED-----------------DGEDDKAQ 324 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~ 324 (436)
++..+|.++...++ +++|+.+|++++++ .+....++..+|.++...|+ +++|+..+
T Consensus 128 ~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGR-FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 99999999999885 99999999999998 56678899999999999999 99999999
Q ss_pred HHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHH
Q 013821 325 EEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGDG------EIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 325 ~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~d~~eA~~~ 380 (436)
.+.+.. .++...|++++|+.+|++++++.+... .++..+|.++..+|+ +++|+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~ 285 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ-FEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-HHHHHHH
Confidence 876553 788999999999999999999876533 389999999999999 9999999
Q ss_pred HHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 381 FERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 381 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
|++++.+.+.. ..++..+|.++..+|++++|+.+|++++.+.+..
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 99999987754 5788999999999999999999999999986543
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=2e-20 Score=172.13 Aligned_cols=196 Identities=14% Similarity=0.148 Sum_probs=185.1
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
+++.+..++..++.+.+ ....+|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|++
T Consensus 52 ~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 130 (252)
T 2ho1_A 52 NTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE 130 (252)
T ss_dssp CTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55678888988888888 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013821 258 ATM--ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 258 al~--~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
++. ..|.+..++..+|.++...++ +++|+.+|+++++..|.+..++..++ .++..
T Consensus 131 ~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~ 187 (252)
T 2ho1_A 131 ASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLNRNQPSVALEMA----------------------DLLYK 187 (252)
T ss_dssp HTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHH----------------------HHHHH
T ss_pred HHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcccHHHHHHHH----------------------HHHHH
Confidence 999 889999999999999999875 99999999999999999999999999 88899
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAY 398 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~l 398 (436)
.|++++|+.+|+++++..|.+..++..++.++...|+ +++|+.+++++++..|+++.++..+
T Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED-RDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999999999998766543
No 53
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=5.4e-21 Score=177.92 Aligned_cols=209 Identities=13% Similarity=0.035 Sum_probs=171.2
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESW 269 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 269 (436)
..+..+..+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|++ +.++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 566788889999999999999999999999999999 8999999999999999999999999999998854 6789
Q ss_pred HHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821 270 MQYAKLVWE--------LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 270 ~~la~~~~~--------~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
+.+|.+++. .++ +++|+..|+++++..|++..+...+..+....+...+. .+....+|...|++++
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~-----~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARK-----QYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHccCHHH
Confidence 999999998 775 99999999999999999876663332221111100000 0000088999999999
Q ss_pred HHHHHHHHHHhCCC---CHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHC
Q 013821 342 AEEYFSRAILANPG---DGEIMSQYAKLVWEL----------HHDHDKALCYFERAVQASPADS---HVLAAYACFLWET 405 (436)
Q Consensus 342 A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~ 405 (436)
|+..|+++++..|+ .+.+++.+|.++..+ |+ +++|+..|+++++..|+++ .+...++.++..+
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~ 245 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER-YRRAVELYERLLQIFPDSPLLRTAEELYTRARQRL 245 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999998 567999999999977 78 9999999999999999985 5566677777666
Q ss_pred CChHHH
Q 013821 406 EEDEDD 411 (436)
Q Consensus 406 g~~~eA 411 (436)
++++++
T Consensus 246 ~~~~~~ 251 (261)
T 3qky_A 246 TELEGD 251 (261)
T ss_dssp HHHHTC
T ss_pred HHhhhh
Confidence 665543
No 54
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.87 E-value=1.7e-21 Score=206.59 Aligned_cols=184 Identities=11% Similarity=-0.040 Sum_probs=169.5
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMI--------DEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE 267 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (436)
+++.++...| ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence 3444444444 67799999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
+|+.+|.++...++ +++|+..|+++++++|++..+++++| .++..+|++++ +.+|+
T Consensus 469 a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~lg----------------------~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 469 LVWYRAVAELLTGD-YDSATKHFTEVLDTFPGELAPKLALA----------------------ATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCSHHHHHHH----------------------HHHHHHTCCCT-TCHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHcCChHH-HHHHH
Confidence 99999999999975 99999999999999999999999999 88889999999 99999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821 348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
++++++|++..+++++|.++..+|+ +++|+..|+++++++|++..++.++|.++...++
T Consensus 525 ~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 525 TVWSTNDGVISAAFGLARARSAEGD-RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhCCchHHHHHHHHHHHHHcCC-HHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999 9999999999999999999999999999988776
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=1.5e-21 Score=185.63 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=199.0
Q ss_pred CCCChHHHHHhhcCCCCCCc----hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 013821 178 RPVSPPMYLAMGLGISVPGF----DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~ 247 (436)
+++++..++..++.+.+ .. ...+..+|.++...|++++|+.++++++.. .|....++..+|.++...|+
T Consensus 20 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp CHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 45577788888888777 44 467888999999999999999999998876 34456788999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhC----
Q 013821 248 LYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRD--------------------QHRALTYFERAALAA---- 297 (436)
Q Consensus 248 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d--------------------~~~A~~~~~~al~~~---- 297 (436)
+++|+.++++++++.+.. ..++..+|.++...+ + +++|+.++++++.+.
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998875543 448888998888876 6 899999999988762
Q ss_pred --CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013821 298 --PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD- 356 (436)
Q Consensus 298 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~- 356 (436)
+....++..+|.++...|++++|...+.+.+.. .++...|++++|+.++++++.+.+..
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 334567888999999999999999988876654 67788899999999999999886654
Q ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 357 -----GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 357 -----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
..++..+|.++..+|+ +++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 6788899999999999 999999999998875432 3578889999999999999999999999887654
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=2.3e-21 Score=184.37 Aligned_cols=225 Identities=9% Similarity=-0.000 Sum_probs=198.1
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----LLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGES 268 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 268 (436)
..+...|..+...|++++|+.+|+++++..|++. .++..+|.++...|++++|+.++++++.+ .+....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4567789999999999999999999999999984 78899999999999999999999999887 4455789
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------chHHHH
Q 013821 269 WMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMED--------------------DGEDDK 322 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 322 (436)
+..+|.++...++ +++|+.++++++++.+.. ..++..+|.++...|+ +++|..
T Consensus 86 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999875 999999999999986543 4488999999999999 889988
Q ss_pred HHHHHHHH------------------hHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHH
Q 013821 323 AQEEHIQV------------------LPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 323 ~~~~~~~~------------------~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~ 378 (436)
.+.+.+.. .++...|++++|+.++++++++.+.. ..++..+|.++...|+ +++|+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETAS 243 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 88766543 77889999999999999999886542 3489999999999999 99999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 379 CYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 379 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
.++++++.+.+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 9999999887655 6788999999999999999999999999886543
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=5.8e-20 Score=165.15 Aligned_cols=179 Identities=15% Similarity=0.144 Sum_probs=168.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
..|+++.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...++ +++|+.+|+++++.+|.+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV-NDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChHHHHH
Confidence 4677889999999999999999999999999999999999999999999999875 999999999999999999999999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAIL--ANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~ 383 (436)
+| .++... |++++|+.+|+++++ ..|.+..++..+|.++...|+ +++|+.+|++
T Consensus 82 l~----------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 138 (225)
T 2vq2_A 82 YG----------------------WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-FGLAEAYLKR 138 (225)
T ss_dssp HH----------------------HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HH----------------------HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 99 888999 999999999999999 667778999999999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CChhHH
Q 013821 384 AVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP-IRQGAV 429 (436)
Q Consensus 384 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p-~~~~~~ 429 (436)
+++..|.+..++..+|.++...|++++|+..+++++.+.| ......
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 185 (225)
T 2vq2_A 139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185 (225)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 9999999999999999999999999999999999999998 665543
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=180.55 Aligned_cols=205 Identities=16% Similarity=0.142 Sum_probs=180.5
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------ 261 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 261 (436)
.....+..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++..
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44578889999999999999999999999995 5667789999999999999999999999999987
Q ss_pred --CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 013821 262 --DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVL 331 (436)
Q Consensus 262 --~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 331 (436)
.|....++..+|.++...++ +++|+.+|++++++. |....++..+| .
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la----------------------~ 161 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA----------------------L 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------H
T ss_pred CCChHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH----------------------H
Confidence 35567899999999998875 999999999999884 45566778888 8
Q ss_pred HHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------
Q 013821 332 PIQSKGDLEGAEEYFSRAILA--------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA---------------- 387 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~---------------- 387 (436)
++...|++++|+.+|++++.. .|....++..+|.++..+|+ +++|+.+|+++++.
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 888889999999999999988 66677889999999999999 99999999999874
Q ss_pred ---------------------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 388 ---------------------------------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 388 ---------------------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
.|....++..+|.++..+|++++|+++|++++++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 4556688999999999999999999999999998764
No 59
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=1.5e-21 Score=166.68 Aligned_cols=147 Identities=12% Similarity=0.065 Sum_probs=103.0
Q ss_pred hHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013821 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+++|+++++++|+++.+|+.+|.++...++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~- 80 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN- 80 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-
Confidence 4667777777777777777777777777777777777777777777777777777777777777777777777776654
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY-FSRAILANPGDGEIMS 361 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~ 361 (436)
+++|+.+|+++++++|+++.+++.+| .++...|++++|... ++++++++|+++.++.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la----------------------~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIA----------------------ELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 77777777777777777777777777 666666666655544 4677777777777777
Q ss_pred HHHHHHHHhcC
Q 013821 362 QYAKLVWELHH 372 (436)
Q Consensus 362 ~la~~~~~~g~ 372 (436)
.++.++...|+
T Consensus 139 l~~~ll~~~G~ 149 (150)
T 4ga2_A 139 LKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHHhCc
Confidence 77776666665
No 60
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.86 E-value=7e-20 Score=159.16 Aligned_cols=172 Identities=16% Similarity=0.099 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
..++..+|.++...|++++|+..++++++..|.+..++..+|.++...++ +++|+.+++++++..|.+..++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a--- 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA-VDRGTELLERSLADAPDNVKVATVLG--- 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHH---
Confidence 35566777777777777777777777777777777777777777766653 77777777777777777777777777
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~ 391 (436)
.++...|++++|+.++++++...|.+..++..+|.++...|+ +++|+.++++++...|.+
T Consensus 84 -------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 84 -------------------LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp -------------------HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC
T ss_pred -------------------HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCccc
Confidence 666677777777777777777777777777777777777777 777777777777777777
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
..++..+|.++...|++++|+.++++++.+.|....
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 777777777777777777777777777777666544
No 61
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=4.6e-20 Score=171.55 Aligned_cols=182 Identities=16% Similarity=0.061 Sum_probs=164.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 013821 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD- 300 (436)
Q Consensus 225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~- 300 (436)
....|.++..++.+|..++..|++++|+..|+++++.+|.+ +.+++.+|.+++..++ +++|+..|+++++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE-YLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHCCCCc
Confidence 45688899999999999999999999999999999999998 9999999999999985 999999999999998854
Q ss_pred --HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH----------
Q 013821 301 --SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS--------KGDLEGAEEYFSRAILANPGDGEIM---------- 360 (436)
Q Consensus 301 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~---------- 360 (436)
..+++.+| .++.. .|++++|+..|+++++..|++..+.
T Consensus 87 ~~~~a~~~lg----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 87 RVPQAEYERA----------------------MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp THHHHHHHHH----------------------HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHH----------------------HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 67788899 77777 9999999999999999999986665
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHC----------CChHHHHHHHHHHHh
Q 013821 361 -------SQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWET----------EEDEDDSKSSDQFQQ 420 (436)
Q Consensus 361 -------~~la~~~~~~g~d~~eA~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~eA~~~~~~al~ 420 (436)
+.+|.++..+|+ +++|+..|+++++..|+ ...++..+|.++..+ |++++|+..|+++++
T Consensus 145 ~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 145 AKLARKQYEAARLYERREL-YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 889999999999 99999999999999998 457999999999987 899999999999999
Q ss_pred hCCCChhHHh
Q 013821 421 VAPIRQGAVT 430 (436)
Q Consensus 421 l~p~~~~~~~ 430 (436)
..|+......
T Consensus 224 ~~p~~~~~~~ 233 (261)
T 3qky_A 224 IFPDSPLLRT 233 (261)
T ss_dssp HCTTCTHHHH
T ss_pred HCCCChHHHH
Confidence 9999865443
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=6.8e-20 Score=159.24 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=164.2
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
...+..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (436)
..++ +++|+.+|+++++..|.+..++..+| .++...|++++|+.+++++++..|.+.
T Consensus 88 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~ 144 (186)
T 3as5_A 88 QVQK-YDLAVPLLIKVAEANPINFNVRFRLG----------------------VALDNLGRFDEAIDSFKIALGLRPNEG 144 (186)
T ss_dssp HHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhcC-HHHHHHHHHHHHhcCcHhHHHHHHHH----------------------HHHHHcCcHHHHHHHHHHHHhcCccch
Confidence 9875 99999999999999999999999999 888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
.++..+|.++...|+ +++|+.+++++++..|++.
T Consensus 145 ~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 145 KVHRAIAFSYEQMGR-HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCch
Confidence 999999999999999 9999999999999988764
No 63
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=2e-20 Score=168.57 Aligned_cols=177 Identities=10% Similarity=-0.003 Sum_probs=136.3
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRN----------------YAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
...+...|..+...|++++|+.+|+++++.+|+++.+++. +|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567788888888999999999999999999988888888 888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CH
Q 013821 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DL 339 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~ 339 (436)
+|+++.+++.+|.++...++ +++|+.+|+++++++|+++.+++.+| .+|...| +.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg----------------------~~~~~~~~~~~ 140 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEADNLAANIFLG----------------------NYYYLTAEQEK 140 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHH----------------------HHHHHHhHHHH
Confidence 88888888888888888874 88888888888888888888888888 5555444 34
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~ 400 (436)
..+...|++++...|. ..+++.+|.++...|+ +++|+.+|+++++++|+ ..+...+..
T Consensus 141 ~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~-~~~A~~~~~~al~l~P~-~~~~~~l~~ 198 (208)
T 3urz_A 141 KKLETDYKKLSSPTKM-QYARYRDGLSKLFTTR-YEKARNSLQKVILRFPS-TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHC---CCCHH-HHHHHHHHHHHHHHHT-HHHHHHHHHHHTTTSCC-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCch-hHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 5667777776543322 3467778888888888 88888888888888886 333333333
No 64
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=3.4e-19 Score=169.26 Aligned_cols=204 Identities=13% Similarity=0.020 Sum_probs=172.8
Q ss_pred CCChHHHHHhhcC--CCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013821 179 PVSPPMYLAMGLG--ISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYN 256 (436)
Q Consensus 179 p~~a~~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 256 (436)
.+.+...+...+. +.+ +++..+..+|.++...|++++|+..|++ |.+..++..+|.++..+|++++|+..|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P-~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDV-TNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCC-SCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3455566665543 356 7889999999999999999999999998 8999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH
Q 013821 257 HATMADPGDGESWMQYAKLVWEL-HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS 335 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~-~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 335 (436)
++++.+|++.......+.+.... .+++++|+.+|+++++..|+++.+++.+| .++..
T Consensus 155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la----------------------~~~~~ 212 (291)
T 3mkr_A 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA----------------------ACHMA 212 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH----------------------HHHHH
T ss_pred HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHH
Confidence 99999999875544444322222 23599999999999999999999999999 89999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821 336 KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK-ALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~e-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 414 (436)
+|++++|+..|+++++.+|+++.++.++|.++..+|+ +.+ +..+++++++++|+++.+.. +..+.+.+++++..
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-PPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 665 67899999999999987654 34455566666555
Q ss_pred H
Q 013821 415 S 415 (436)
Q Consensus 415 ~ 415 (436)
|
T Consensus 288 ~ 288 (291)
T 3mkr_A 288 Y 288 (291)
T ss_dssp H
T ss_pred c
Confidence 4
No 65
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=3.6e-20 Score=166.87 Aligned_cols=176 Identities=11% Similarity=0.045 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHH
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQ----------------YAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~d~~~A~~~~~~al 294 (436)
.++.++..|..+...|++++|+..|+++++.+|+++.+++. +|.++...++ +++|+..|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN-YDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999 9999999875 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-C
Q 013821 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH-D 373 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-d 373 (436)
+++|++..++..+| .++...|++++|+.+|+++++++|+++.+++++|.+++..|+ +
T Consensus 82 ~~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 82 QKAPNNVDCLEACA----------------------EMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHCTTCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 99999999999999 889999999999999999999999999999999999987764 1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 374 HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 374 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
...+...+.+++...|. ..+++.+|.++...|++++|+..|++++++.|+......
T Consensus 140 ~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 140 KKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 45677788877643332 357788999999999999999999999999998654433
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=1e-19 Score=173.89 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-------KGDL-------YRAEDYYNHATM-ADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 279 (436)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 7999999999999999888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 280 HRDQHRALTYFERAALAAPQDSN-ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
+ ++++|+..|++++++.|.+.. +|..++ .++.+.|++++|+..|+++++..|.+..
T Consensus 113 ~-~~~~A~~~~~~al~~~p~~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 113 M-KYEKVHSIYNRLLAIEDIDPTLVYIQYM----------------------KFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp T-CHHHHHHHHHHHHTSSSSCTHHHHHHHH----------------------HHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred C-CHHHHHHHHHHHHhccccCccHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 7 499999999999999999987 899999 7788899999999999999999999988
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 359 IMSQYAKLVWE-LHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 359 ~~~~la~~~~~-~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
+|...+.+... .|+ +++|+..|+++++..|+++.+|..++.++..+|++++|+..|++++..
T Consensus 170 ~~~~~a~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 170 VYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHTSCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88877766554 577 999999999999999999999999999999999999999999999996
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=4.8e-21 Score=163.52 Aligned_cols=147 Identities=19% Similarity=0.177 Sum_probs=135.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 013821 237 NYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMED 316 (436)
Q Consensus 237 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 316 (436)
.||.++..+|++++|+..+++++..+|+++..++.+|.+|+..++ +++|+.+|+++++++|+++.+|..+|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~-~~~A~~~~~~al~~~p~~~~a~~~lg-------- 72 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE-YDLAKKYICTYINVQERDPKAHRFLG-------- 72 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH--------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH--------
Confidence 478888999999999999999999999999999999999999975 99999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHH
Q 013821 317 DGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCY-FERAVQASPADSHVL 395 (436)
Q Consensus 317 ~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~-~~~al~~~p~~~~~~ 395 (436)
.++...|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|... ++++++++|+++.++
T Consensus 73 --------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 73 --------------LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp --------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHSTTCHHHH
T ss_pred --------------HHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhCcCCHHHH
Confidence 899999999999999999999999999999999999999999 8877665 699999999999999
Q ss_pred HHHHHHHHHCCC
Q 013821 396 AAYACFLWETEE 407 (436)
Q Consensus 396 ~~la~~~~~~g~ 407 (436)
..++.++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 999999998886
No 68
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=4.4e-20 Score=175.21 Aligned_cols=202 Identities=13% Similarity=0.055 Sum_probs=167.0
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPC------HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GES 268 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 268 (436)
+...|.++...|++++|+.+|++++++.+. .+.++.++|.+|..+|++++|+.+|++++++.+.. ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333467888899999999999999998532 25789999999999999999999999999987653 568
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821 269 WMQYAKLVWEL-HRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 269 ~~~la~~~~~~-~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
+..+|.+|... ++ +++|+.+|++++++.|.+ ..++.++| .++..+|++++
T Consensus 120 ~~~lg~~~~~~lg~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~ 176 (292)
T 1qqe_A 120 KFELGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCA----------------------DLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred HHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH----------------------HHHHHhCCHHH
Confidence 99999999885 74 999999999999998754 45677778 88999999999
Q ss_pred HHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--HCCC
Q 013821 342 AEEYFSRAILANPGDGE-------IMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-----VLAAYACFLW--ETEE 407 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~ 407 (436)
|+.+|++++++.|++.. ++.++|.++..+|+ +++|+.+|+++++++|.... .+..++..+. ..++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999987653 68899999999999 99999999999999998664 3445566554 4678
Q ss_pred hHHHHHHHHHHHhhCCCCh
Q 013821 408 DEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 408 ~~eA~~~~~~al~l~p~~~ 426 (436)
+++|+..|.+++.++|...
T Consensus 256 ~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHhccCCccHHHHH
Confidence 9999999999988887653
No 69
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.83 E-value=6.1e-19 Score=167.90 Aligned_cols=224 Identities=12% Similarity=0.117 Sum_probs=198.3
Q ss_pred CChHHHHHhhcCCCCCCchhhhhhHHhhhhhCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHH
Q 013821 180 VSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD--DSAEAEEYYKRMIDEYPCHPLLLRNYAQLL----QKK---GDLYR 250 (436)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~~~~~la~~~----~~~---g~~~~ 250 (436)
+++......++.+.+ .+..+|...|.++...| ++++++.++++++..+|++..+|..++.++ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 367778888899999 79999999999999888 999999999999999999999999999988 666 78999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821 251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQH--RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
++.++.++++.+|.+..+|...+.++...+. ++ +++++++++++.+|.+..+|...+
T Consensus 129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~d~~N~sAW~~R~-------------------- 187 (306)
T 3dra_A 129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDTDLKNNSAWSHRF-------------------- 187 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHCTTCHHHHHHHH--------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHhCCCCHHHHHHHH--------------------
Confidence 9999999999999999999999988888875 77 999999999999999999999998
Q ss_pred HHhHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Q 013821 329 QVLPIQSKGD------LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---PADSHVLAAYA 399 (436)
Q Consensus 329 ~~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---p~~~~~~~~la 399 (436)
.++...++ ++++++++.+++..+|.+..+|++++.++...|+..++....+.+++.++ |.++.++..++
T Consensus 188 --~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 188 --FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp --HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred --HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 56666665 89999999999999999999999999999999995555667888888776 88999999999
Q ss_pred HHHHHCCChHHHHHHHHHHHh-hCCCChh
Q 013821 400 CFLWETEEDEDDSKSSDQFQQ-VAPIRQG 427 (436)
Q Consensus 400 ~~~~~~g~~~eA~~~~~~al~-l~p~~~~ 427 (436)
.++.+.|+.++|+++|+.+.+ .+|....
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~Dpir~~ 294 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYNPIRSN 294 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHccCCHHHHHHHHHHHHhccChHHHH
Confidence 999999999999999999996 7886443
No 70
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=7.9e-20 Score=193.72 Aligned_cols=176 Identities=11% Similarity=-0.014 Sum_probs=166.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT--------MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
.+|+++.+++..+ ...|++++|++.|++++ +.+|++..+++.+|.++...++ +++|+..|+++++.+|
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD-VAKATRKLDDLAERVG 464 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHhccCc
Confidence 4678887777766 78999999999999999 9999999999999999999985 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 013821 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKAL 378 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~ 378 (436)
++..+|+.+| .++...|++++|+..|+++++++|++..+++++|.++..+|+ +++ +
T Consensus 465 ~~~~a~~~lg----------------------~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~ 520 (681)
T 2pzi_A 465 WRWRLVWYRA----------------------VAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-H 520 (681)
T ss_dssp CCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-T
T ss_pred chHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-H
Confidence 9999999999 889999999999999999999999999999999999999999 999 9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 379 CYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 379 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
.+|+++++++|++..+++++|.++..+|++++|++.|+++++++|++..+..
T Consensus 521 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 572 (681)
T 2pzi_A 521 KFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARL 572 (681)
T ss_dssp CHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHH
Confidence 9999999999999999999999999999999999999999999999877654
No 71
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=7.1e-19 Score=160.22 Aligned_cols=188 Identities=11% Similarity=0.006 Sum_probs=139.2
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE---SWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 271 (436)
+..+..+|..++..|++++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 45678888888888999999999999999888763 68888999999999999999999999999888754 7888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821 272 YAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
+|.++...+.. ....+..++ ..+...|++++|+..|+++++
T Consensus 84 ~g~~~~~~~~~-----------------~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 84 RGLTNMALDDS-----------------ALQGFFGVD----------------------RSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp HHHHHHHHHC-----------------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhh-----------------hhhhhhccc----------------------hhhcCcHHHHHHHHHHHHHHH
Confidence 88887764310 000011111 223334444444444444444
Q ss_pred hCCCCHH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHH
Q 013821 352 ANPGDGE-----------------IMSQYAKLVWELHHDHDKALCYFERAVQASPADS---HVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 352 ~~p~~~~-----------------~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA 411 (436)
..|++.. ....+|.++...|+ +++|+..|+++++..|+++ .++..+|.++.++|++++|
T Consensus 125 ~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 125 GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA-WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 4444432 23678999999999 9999999999999999986 6799999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 013821 412 SKSSDQFQQVAPIR 425 (436)
Q Consensus 412 ~~~~~~al~l~p~~ 425 (436)
++.++++....|..
T Consensus 204 ~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 204 EKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHCCSCC
T ss_pred HHHHHHHHhhCCCc
Confidence 99999999888764
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=1.4e-19 Score=168.24 Aligned_cols=190 Identities=17% Similarity=0.178 Sum_probs=166.5
Q ss_pred hhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 013821 209 PNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA--------DPGDGESWMQY 272 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 272 (436)
...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++.+ .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3458888888888888884 2556789999999999999999999999999987 35567899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013821 273 AKLVWELHRDQHRALTYFERAALA--------APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
|.++...++ +++|+.+|++++++ +|....++..+| .++...|++++|+.
T Consensus 92 ~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 92 AVLYGKRGK-YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA----------------------LLCQNQGKAEEVEY 148 (283)
T ss_dssp HHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------HHHHTTTCHHHHHH
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH----------------------HHHHHcCCHHHHHH
Confidence 999998875 99999999999998 466677888888 88889999999999
Q ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------------
Q 013821 345 YFSRAILA--------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS---------------------------- 388 (436)
Q Consensus 345 ~~~~al~~--------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---------------------------- 388 (436)
+|++++++ .|....++..+|.++..+|+ +++|+.+|++++++.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 99999998 67778899999999999999 999999999999862
Q ss_pred ---------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 389 ---------------------PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 389 ---------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
|....++..+|.++..+|++++|+.+|++++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3445788999999999999999999999999763
No 73
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.81 E-value=1.3e-17 Score=155.79 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=170.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
+|.++.+++.+|.++...|++++|+.+|+++++ |.++.+++.+|.++.. .+ ++++|+.+|+++++.+ ++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC--CHHH
Confidence 578899999999999999999999999999999 8889999999999988 76 5999999999999985 8999
Q ss_pred HHHHHHHHHH----ccCchHHHHHHHHHHHH----------hHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 304 LAAYACFLWE----MEDDGEDDKAQEEHIQV----------LPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAK 365 (436)
Q Consensus 304 ~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (436)
++.+|.++.. .+++++|+..+++.+.. .+|.. .+++++|+.+|+++++.. +..++.++|.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 9999999999 99999999999987765 77888 999999999999999976 6899999999
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCC
Q 013821 366 LVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 366 ~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p 423 (436)
++.. .++ +++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++..|
T Consensus 155 ~~~~~~~~~~~-~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 155 LYDAGRGTPKD-LKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 9998 888 999999999999874 57899999999999 9999999999999999865
No 74
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=4e-19 Score=155.40 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM 314 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 314 (436)
++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...++ +++|+..|++++..+| ++..+..++.+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-~~~A~~~~~~a~~~~p-~~~~~~~~~~~~--- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ-FELAQELLATIPLEYQ-DNSYKSLIAKLE--- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC-HHHHHHHHTTCCGGGC-CHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHhhhccC-ChHHHHHHHHHH---
Confidence 34444444444444444444444444444444444444444444432 4444444444444444 433333222110
Q ss_pred cCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--H
Q 013821 315 EDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD--S 392 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~--~ 392 (436)
+...++..+|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+. .
T Consensus 84 ------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~ 144 (176)
T 2r5s_A 84 ------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR-DEEALELLWNILKVNLGAQDG 144 (176)
T ss_dssp ------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTTTTT
T ss_pred ------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccChH
Confidence 0111122234555556666666656666666666666655 666666666666555543 3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 393 HVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 393 ~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
.++..++.++..+|+.++|+..|++++.
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 4555566666666666666666655553
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=3.6e-18 Score=175.50 Aligned_cols=218 Identities=16% Similarity=0.113 Sum_probs=195.1
Q ss_pred hHHHHHhhcCCCCCCchhhhhhHHhhhhh-------CCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcC
Q 013821 182 PPMYLAMGLGISVPGFDDAGEVVDLIMPN-------FDDSA-------EAEEYYKRMID-EYPCHPLLLRNYAQLLQKKG 246 (436)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~P~~~~~~~~la~~~~~~g 246 (436)
+...|.+++...+ ..+..|...|.++.. .|+++ +|+..|+++++ ..|++..+|..+|.++...|
T Consensus 257 a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 3457888888888 789999999999886 79987 89999999997 79999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821 247 DLYRAEDYYNHATMADPGDG-ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
++++|+..|++++++.|.++ .+|..++.++...++ +++|+..|+++++..|.....+...+
T Consensus 336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~~~~~~~~~~~~a----------------- 397 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAA----------------- 397 (530)
T ss_dssp CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTCCTHHHHHHH-----------------
T ss_pred CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhccCCchHHHHHHH-----------------
Confidence 99999999999999999985 699999999888876 99999999999999888777766555
Q ss_pred HHHHHhH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Q 013821 326 EHIQVLP-IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS----HVLAAYAC 400 (436)
Q Consensus 326 ~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~----~~~~~la~ 400 (436)
.+ +...|++++|..+|+++++..|+++.+|..++.++...|+ +++|..+|++++...|.++ .+|..+..
T Consensus 398 -----~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~-~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 398 -----LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp -----HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred -----HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC-HhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 33 4468999999999999999999999999999999999999 9999999999999877654 48889999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCC
Q 013821 401 FLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 401 ~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
+....|+.+.+..++.++++..|.
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999999873
No 76
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.80 E-value=2.4e-18 Score=162.96 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=135.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 228 YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
-|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...++ +++|+..|++++..+|+....+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR-SEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC-HHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC-HHHHHHHHHhCchhhcchHHHHHHH
Confidence 377777888888888888888888888888888888888888888888777764 8888888888888888655544555
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
+ ..+...++.++|+..|++++..+|++..+++++|.++...|+ +++|+..|+++++.
T Consensus 192 ~----------------------~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 192 Q----------------------IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR-NEEALELLFGHLRX 248 (287)
T ss_dssp H----------------------HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred H----------------------HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhc
Confidence 5 556667777778888888888888888888888888888888 88888888888888
Q ss_pred CCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 388 SPAD--SHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 388 ~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
+|++ ..++..++.++..+|+.++|+..|++++.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 8887 77888888888888888888888888775
No 77
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=3.9e-19 Score=155.43 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=149.2
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999 88877776655443
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 013821 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-- 356 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-- 356 (436)
...+..+|+..|+++++.+|+++.+++.+| .++...|++++|+..|+++++.+|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELA----------------------VQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 322245689999999999999999999999 89999999999999999999999975
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~ 386 (436)
..++..+|.++..+|+ .++|+..|++++.
T Consensus 144 ~~a~~~l~~~~~~~g~-~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQ-GNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCcHHHHHHHHHH
Confidence 6699999999999999 9999999999875
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=7.3e-19 Score=172.79 Aligned_cols=223 Identities=12% Similarity=0.028 Sum_probs=159.2
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDE---YPC---HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-------DGE 267 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 267 (436)
+..+|.++...|++++|+.+|+++++. .++ .+.++..+|.+|...|++++|+.++++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344788888888888888888888876 222 4477888888888888888888888888887433 245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHH-----------
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQV----------- 330 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------- 330 (436)
++..+|.++...++ +++|+.+|++++++.+.. ..++.++|.++...|++++|+..+.+++..
T Consensus 186 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 186 CHSLFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 78888888888774 888888888888775432 246778887777777777766666665552
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 331 -------LPIQSKGDLEGAEEYFSRAILAN-----PGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p~~~~~~~ 396 (436)
.++..+|++++|+.++++++++. |.....+..+|.++...|+ .+.+|+..+++. ...|....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 66777788888888888887773 3323335567777776664 033444444433 11223346788
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 397 AYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 397 ~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
.+|.++..+|++++|+.+|++++.+....
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999886443
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=1.5e-18 Score=164.73 Aligned_cols=178 Identities=13% Similarity=0.057 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHH
Q 013821 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG------DGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~d~~~A 286 (436)
++++|+.+|+++ |.+|...|++++|+.+|++++++.+. .+.++.++|.+|...++ +++|
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-SVNA 96 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC-HHHH
Confidence 599999999988 66788999999999999999998532 26789999999999875 9999
Q ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc-CCHHHHHHHHHHHHHhCCCC---
Q 013821 287 LTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK-GDLEGAEEYFSRAILANPGD--- 356 (436)
Q Consensus 287 ~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~--- 356 (436)
+.+|++++++.+.. ..++.++| .+|... |++++|+.+|++++++.|.+
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg----------------------~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELG----------------------EILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------HHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 99999999997653 45667777 888886 99999999999999998754
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 357 ---GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSH-------VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 357 ---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
..++.++|.++..+|+ +++|+.+|++++.+.|++.. ++..+|.++..+|++++|+.+|++++.+.|.+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 5689999999999999 99999999999999987653 678999999999999999999999999999876
Q ss_pred hH
Q 013821 427 GA 428 (436)
Q Consensus 427 ~~ 428 (436)
..
T Consensus 234 ~~ 235 (292)
T 1qqe_A 234 DS 235 (292)
T ss_dssp --
T ss_pred Cc
Confidence 53
No 80
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=1.7e-18 Score=143.11 Aligned_cols=117 Identities=19% Similarity=0.126 Sum_probs=58.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
++|+.+..+..+|..+++.|+|++|+..|+++++++|.++.+|..+|.++..+++ +++|+..|+++++++|++..+|+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-FQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4444445555555555555555555555555555555555555555555444442 555555555555555555555555
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
+| .++..+|++++|+..|+++++++|++.+++..++.+
T Consensus 87 lg----------------------~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KA----------------------ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HH----------------------HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 55 444444555555555555555555555544444443
No 81
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.79 E-value=5.8e-18 Score=175.49 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013821 211 FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYF 290 (436)
Q Consensus 211 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~ 290 (436)
.|++++|+.+|+++++.+|++..++..+|.++...|++++|+++|+++++++|++..++..+|.++...++ +++|+.+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR-HAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999875 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821 291 ERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 291 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
+++++++|++..++..+| .++...|++++|+++|+++++.+|++..++.++|.++..+
T Consensus 81 ~~al~~~p~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLG----------------------HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999 8899999999999999999999999999999999999999
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 371 ---HHDHDKALCYFERAVQASPADSHVLAAYA 399 (436)
Q Consensus 371 ---g~d~~eA~~~~~~al~~~p~~~~~~~~la 399 (436)
|+ +++|+..|+++++.+|.+...+..++
T Consensus 139 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 139 CDWRA-LDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp TCCTT-HHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred hcccc-HHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99 99999999999999999887777766
No 82
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=3.4e-18 Score=141.31 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=109.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHc
Q 013821 257 HATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSK 336 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 336 (436)
++..++|+.+.++..+|..++..++ |++|+.+|+++++++|.++.++.++| .++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~----------------------~~~~~~ 60 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPENAILYSNRA----------------------ACLTKL 60 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHT
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHh----------------------hHHHhh
Confidence 3455788889999999999999875 99999999999999999999999999 888889
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 337 GDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
|++++|+..|+++++++|+++.+|+++|.++..+|+ +++|+..|+++++++|++..++..++.++
T Consensus 61 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 61 MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-WSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999999999999998888764
No 83
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.78 E-value=1e-16 Score=153.56 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=198.6
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--H
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDD----------SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD--L 248 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~ 248 (436)
++..+...++.+.| .+..+|...+.++...+. +++++.+++.++..+|++..+|...+.++...++ +
T Consensus 48 eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 57888999999999 899999999999887776 6899999999999999999999999999999994 9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
++++.++.++++.+|.+..+|...+.++...+..++++++++.++++.+|.+..+|..++.++........+..
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~------ 200 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP------ 200 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc------
Confidence 99999999999999999999999999998887546999999999999999999999999966554422110000
Q ss_pred HHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 329 QVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----------HHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 329 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~d~~eA~~~~~~al~~~p~~~~~~~~ 397 (436)
..-...+.++++++++.+++..+|++..+|+++..++... +. ++++++.+.+++++.|++...+..
T Consensus 201 --~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~-l~~el~~~~elle~~pd~~w~l~~ 277 (331)
T 3dss_A 201 --QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV-LQSELESCKELQELEPENKWCLLT 277 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHH-HHHHHHHHHHHHhhCcccchHHHH
Confidence 0000014689999999999999999999998777776655 45 899999999999999999766555
Q ss_pred HHHHHH---HCCChHHHHHHHHHHHhhCCCChhH
Q 013821 398 YACFLW---ETEEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 398 la~~~~---~~g~~~eA~~~~~~al~l~p~~~~~ 428 (436)
++.+.. ..|..++...++.+..+++|...+-
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 554432 3577889999999999999976554
No 84
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=9.6e-17 Score=163.21 Aligned_cols=229 Identities=10% Similarity=0.075 Sum_probs=167.0
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPN----FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAE 252 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~ 252 (436)
.+..++.++... +.+.++..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+
T Consensus 169 ~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 169 MAREWYSKAAEQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 444455544432 345666677776666 67777777777777664 356667777777765 67777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCchHHHHH
Q 013821 253 DYYNHATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEM-----EDDGEDDKA 323 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~ 323 (436)
.+|+++++. .++.+++.+|.++.. .+ ++++|+.+|+++++. .++.+++.+|.++... +++++|+.+
T Consensus 244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~-d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAK-EPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSC-CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 777777654 456777777777665 43 578888888877654 5677788888888777 777888888
Q ss_pred HHHHHHH----------hHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHH
Q 013821 324 QEEHIQV----------LPIQSKG---DLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQ 386 (436)
Q Consensus 324 ~~~~~~~----------~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~ 386 (436)
+.+..+. .+|...| ++++|+.+|+++++. .++.+++++|.++.. .++ +++|+.+|+++++
T Consensus 319 ~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 319 YTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD-EQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHh
Confidence 7766654 5555545 788888888888876 568888888888888 666 8999999998887
Q ss_pred hCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCC
Q 013821 387 ASPADSHVLAAYACFLWE----TEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 387 ~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~ 424 (436)
.. ++.++.++|.+|.. .+++++|+.+|+++++..|+
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 54 57888889999888 88899999999999888754
No 85
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=8.4e-18 Score=159.18 Aligned_cols=167 Identities=11% Similarity=0.064 Sum_probs=156.2
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
.....+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999999999999999999999777666777766
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+...++ .++|+..|+++++.+|++..+++.+| .++...|++++|+..|+++++.+|+
T Consensus 195 l~~~~~-~~~a~~~l~~al~~~P~~~~~~~~la----------------------~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 195 LLXQAA-DTPEIQQLQQQVAENPEDAALATQLA----------------------LQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHT-SCHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhcc-cCccHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhcccc
Confidence 777765 89999999999999999999999999 8999999999999999999999999
Q ss_pred C--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821 356 D--GEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 356 ~--~~~~~~la~~~~~~g~d~~eA~~~~~~al~ 386 (436)
+ ..++.+++.++..+|+ .++|...|++++.
T Consensus 252 ~~~~~a~~~l~~~~~~~g~-~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGT-GDALASXYRRQLY 283 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCC-CCcHHHHHHHHHH
Confidence 8 8999999999999999 9999999999875
No 86
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.76 E-value=2.5e-17 Score=170.71 Aligned_cols=160 Identities=14% Similarity=0.033 Sum_probs=136.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHH
Q 013821 245 KGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQ 324 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 324 (436)
.|++++|+..|+++++.+|.+..+++.+|.++...++ +++|+..|+++++++|++..++..+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg---------------- 64 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGD-TTAGEMAVQRGLALHPGHPEAVARLG---------------- 64 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHTTSTTCHHHHHHHH----------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------
Confidence 4789999999999999999999999999999999975 99999999999999999999999999
Q ss_pred HHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 325 EEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 325 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.++..+|++++|+.+|+++++++|++..+++++|.++..+|+ +++|+..|+++++++|++..++..++.++..
T Consensus 65 ------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 65 ------RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred C---CChHHHHHHHHHHHhhCCCChhH
Q 013821 405 T---EEDEDDSKSSDQFQQVAPIRQGA 428 (436)
Q Consensus 405 ~---g~~~eA~~~~~~al~l~p~~~~~ 428 (436)
+ |++++|++.|+++++..|....+
T Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 138 LCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred hhccccHHHHHHHHHHHHhcCCcccCh
Confidence 9 99999999999999999886543
No 87
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.76 E-value=6.6e-20 Score=177.79 Aligned_cols=152 Identities=9% Similarity=0.060 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 013821 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---------------SNILAAYACF 310 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 310 (436)
+++++|+..|++++..+|.++.++..+|.+++..++ +++|+.+|++++++.|.+ ..++.++|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla-- 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA-- 203 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH--
Confidence 334444444444444444444444444444444442 555555555555555444 67888899
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
.++..+|++++|+.+|+++++++|+++.+++++|.++..+|+ +++|+..|+++++++|+
T Consensus 204 --------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 204 --------------------MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPN 262 (336)
T ss_dssp --------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSS
T ss_pred --------------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCC
Confidence 899999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHCCChHHH-HHHHHHHHhh
Q 013821 391 DSHVLAAYACFLWETEEDEDD-SKSSDQFQQV 421 (436)
Q Consensus 391 ~~~~~~~la~~~~~~g~~~eA-~~~~~~al~l 421 (436)
+..++..++.++..+|++++| ...|++++..
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 4567776653
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=3.6e-17 Score=159.75 Aligned_cols=244 Identities=14% Similarity=0.072 Sum_probs=202.0
Q ss_pred CCCChHHHHHhhcCCCCCCch----hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCC
Q 013821 178 RPVSPPMYLAMGLGISVPGFD----DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGD 247 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~ 247 (436)
+++.+..++..++...+.... .++..+|.++...|++++|+.++++++...|... .++..+|.++...|+
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 445677777777776653322 3678899999999999999999999999765432 447889999999999
Q ss_pred HHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 013821 248 LYRAEDYYNHATMAD--------PGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ-----DSNILAAYACFLWEM 314 (436)
Q Consensus 248 ~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~ 314 (436)
+++|+.++++++++. |....++..+|.+++..++ +++|+.++++++.+.+. ...++..++.++...
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 187 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence 999999999999874 3345678889999999875 99999999999999875 346788999999999
Q ss_pred cCchHHHHHHHHHHHH-------------------hHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhc
Q 013821 315 EDDGEDDKAQEEHIQV-------------------LPIQSKGDLEGAEEYFSRAILANPGD----GEIMSQYAKLVWELH 371 (436)
Q Consensus 315 g~~~~A~~~~~~~~~~-------------------~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g 371 (436)
|++++|...+++.+.. .++...|++++|..++++++...+.. ...+..++.++...|
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 267 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 267 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999998866543 23668999999999999999877653 346788999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821 372 HDHDKALCYFERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 372 ~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 423 (436)
+ +++|+..+++++...+.. ..++..++.++...|++++|...+++++.+.+
T Consensus 268 ~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 268 E-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 9 999999999998875431 25788899999999999999999999998753
No 89
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=4.9e-16 Score=157.95 Aligned_cols=212 Identities=11% Similarity=0.136 Sum_probs=102.1
Q ss_pred hhhhhhHHhhhhh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 198 DDAGEVVDLIMPN----FDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQK----KGDLYRAEDYYNHATMADPGDGESW 269 (436)
Q Consensus 198 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 269 (436)
+.++..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 3444444444444 44444444444444433 234444444444444 44444444444444443 244444
Q ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCchHHHHHHHHHHHH----------h
Q 013821 270 MQYAKLVWE----LHRDQHRALTYFERAALAAPQDSNILAAYACFLWE----MEDDGEDDKAQEEHIQV----------L 331 (436)
Q Consensus 270 ~~la~~~~~----~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~----------~ 331 (436)
+.+|.+|.. .+ ++++|+.+|+++++. .++.+++.+|.++.. .+++++|...+.+.... .
T Consensus 187 ~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVER-NDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCc-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444443 22 344455555444443 234444444444443 44444444444433322 3
Q ss_pred HHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 332 PIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL-----HHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 332 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
++.. .+++++|+.+|+++++. .++.+++.+|.++... ++ +++|+.+|+++++. .++.++..+|.++
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~-~~~A~~~~~~a~~~--~~~~a~~~lg~~y 338 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN-REQAISWYTKSAEQ--GDATAQANLGAIY 338 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 3333 45555555555555433 3455555555555544 34 55555555555553 2345555555555
Q ss_pred HHCC---ChHHHHHHHHHHHhh
Q 013821 403 WETE---EDEDDSKSSDQFQQV 421 (436)
Q Consensus 403 ~~~g---~~~eA~~~~~~al~l 421 (436)
...| ++++|+.+|+++.+.
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT
T ss_pred HhCCCcccHHHHHHHHHHHHHC
Confidence 5544 455555555555554
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.75 E-value=1.2e-17 Score=155.04 Aligned_cols=209 Identities=14% Similarity=0.116 Sum_probs=159.1
Q ss_pred CCCChHHHHHhhcCC-------CCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGI-------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--------PCHPLLLRNYAQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~la~~~ 242 (436)
+++.|..++.+++.+ +....+.++..+|.++...|++++|+.+|+++++.. |....++..+|.++
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 555666666666653 222456889999999999999999999999999873 55668999999999
Q ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 013821 243 QKKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA--------APQDSNILAA 306 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~ 306 (436)
...|++++|+.+|++++.+ +|....++..+|.++...++ +++|+.+|++++++ .|....++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998 46678899999999999875 99999999999999 6777888999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHH---------------------hHHHH------cCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEHIQV---------------------LPIQS------KGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~---------------------~~~~~------~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+|.++...|++++|...+.+.+.. ..+.. ...+.++..+++.+....|....+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 997777776666666666665543 00011 111233333333332234566778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821 360 MSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~eA~~~~~~al~~~ 388 (436)
+..+|.++..+|+ +++|+.+|++++++.
T Consensus 255 ~~~la~~~~~~g~-~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 255 LRSLGALYRRQGK-LEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhh
Confidence 9999999999999 999999999998753
No 91
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=7.5e-17 Score=165.64 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQK-------KGDLY-------RAEDYYNHATM-ADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 279 (436)
.+++..|++++..+|.++.+|+.+|.++.. .|+++ +|+..|+++++ ..|++..+|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79987 99999999997 8999999999999998888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 280 HRDQHRALTYFERAALAAPQDS-NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++ +++|...|++++++.|.++ .+|..++ .++.+.|++++|+..|++|++..|....
T Consensus 335 g~-~~~A~~~~~~al~~~p~~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 335 MK-YEKVHSIYNRLLAIEDIDPTLVYIQYM----------------------KFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp TC-HHHHHHHHHHHHHSSSSCHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred CC-HHHHHHHHHHHhCccccCchHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 75 9999999999999999985 6899999 7777889999999999999999998888
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 359 IMSQYAKLV-WELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 359 ~~~~la~~~-~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
.+...+.+. ...|+ +++|..+|+++++..|+++.+|..++.++...|+.++|...|++++...|...
T Consensus 392 ~~~~~a~~~~~~~~~-~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 392 VYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHHHHHHHHHHHcCC-hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 887777664 35788 99999999999999999999999999999999999999999999999876543
No 92
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.75 E-value=2.5e-16 Score=150.85 Aligned_cols=193 Identities=13% Similarity=0.090 Sum_probs=176.3
Q ss_pred CCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821 211 FDDS-AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD----------LYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 211 ~g~~-~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.|++ ++|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|++..+|...+.++...
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 3554 589999999999999999999999999988776 78999999999999999999999999999888
Q ss_pred cC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCC-HHHHHHHHHHHHHhCCCCH
Q 013821 280 HR-DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGD-LEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 280 ~~-d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~ 357 (436)
+. ++++++.++.++++.+|.+..+|...+ .+....|. ++++++++.++++.+|.|.
T Consensus 122 ~~~~~~~EL~~~~k~l~~dprNy~AW~~R~----------------------~vl~~l~~~~~eel~~~~~~I~~~p~N~ 179 (331)
T 3dss_A 122 PEPNWARELELCARFLEADERNFHCWDYRR----------------------FVAAQAAVAPAEELAFTDSLITRNFSNY 179 (331)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred CcccHHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence 74 489999999999999999999999999 77777888 6999999999999999999
Q ss_pred HHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----------CChHHHH
Q 013821 358 EIMSQYAKLVWEL--------------HHDHDKALCYFERAVQASPADSHVLAAYACFLWET-----------EEDEDDS 412 (436)
Q Consensus 358 ~~~~~la~~~~~~--------------g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~eA~ 412 (436)
.+|.+++.++..+ +. ++++++++.+++..+|++..+|+.+..++... +.+++++
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~-~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 9999999999988 56 89999999999999999999998777777666 4578999
Q ss_pred HHHHHHHhhCCCCh
Q 013821 413 KSSDQFQQVAPIRQ 426 (436)
Q Consensus 413 ~~~~~al~l~p~~~ 426 (436)
+.+.+++++.|+..
T Consensus 259 ~~~~elle~~pd~~ 272 (331)
T 3dss_A 259 ESCKELQELEPENK 272 (331)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhhCcccc
Confidence 99999999999863
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.75 E-value=2.4e-17 Score=161.83 Aligned_cols=221 Identities=14% Similarity=-0.001 Sum_probs=159.9
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYP------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-------DG 266 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 266 (436)
.+...|..+...|++++|+.+|+++++..+ ..+.++..+|.+|...|++++|+.++++++++.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999998632 24578999999999999999999999999987543 25
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH----------
Q 013821 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQ------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV---------- 330 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------- 330 (436)
.++..+|.++...++ +++|+.+|++++++.+. ...++.++|.++...|++++|+..+.+++..
T Consensus 183 ~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKH-YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 678899999999875 99999999999987432 2457788997777766666666666655552
Q ss_pred -------hHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 331 -------LPIQSKGDLEGAEEYFSRAILANP-----GDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 331 -------~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p~~~~~~~ 396 (436)
.++...|++++|+.++++++++.+ .....+..++.++...++ .+.+|+.++++. ...|....++.
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 340 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHH
Confidence 566666667777777776666632 223334444444443332 033344433331 11122235677
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 397 AYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 397 ~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
.+|.++...|++++|+.+|++++++.
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999998864
No 94
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=163.78 Aligned_cols=211 Identities=14% Similarity=0.114 Sum_probs=168.2
Q ss_pred CCCChHHHHHhhcCC-------CCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGI-------SVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDE--------YPCHPLLLRNYAQLL 242 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~ 242 (436)
+++.+..++..++.+ +......++..+|.++...|++++|+.+|++++.. .|....++..+|.++
T Consensus 42 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (311)
T 3nf1_A 42 RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY 121 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 444677777777764 22255688999999999999999999999999987 355668999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 013821 243 QKKGDLYRAEDYYNHATMAD--------PGDGESWMQYAKLVWELHRDQHRALTYFERAALA--------APQDSNILAA 306 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~~ 306 (436)
...|++++|+.+|++++++. |....++..+|.++...++ +++|+.+|+++++. .|....++..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999874 5567889999999998875 99999999999998 6777888999
Q ss_pred HHHHHHHccCchHHHHHHHHHHHH---------------------------hHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEHIQV---------------------------LPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~---------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+|.++...|++++|...+.+.+.. ..+...+.+.+|+..+++++...|....+
T Consensus 201 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 280 (311)
T 3nf1_A 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT 280 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence 998888888888888888877653 23344556666777777777788888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 360 MSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
+..+|.++..+|+ +++|+.+|++++++.|.
T Consensus 281 ~~~la~~~~~~g~-~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 281 LKNLGALYRRQGK-FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHhhc
Confidence 9999999999999 99999999999998875
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.74 E-value=3e-16 Score=149.28 Aligned_cols=189 Identities=13% Similarity=0.135 Sum_probs=171.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc--CCH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG--DLYRAEDYYNHATMADPGDGESWMQYAKLV----WELH--RDQ 283 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~~--~d~ 283 (436)
+..++|+.++.++|.++|++..+|...+.++...| ++++++.++.+++..+|++..+|+..+.++ ...+ +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 44479999999999999999999999999999999 999999999999999999999999999998 5552 469
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHH
Q 013821 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE--GAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~ 361 (436)
++++.++.++++.+|.+..+|...+ +++...|.++ ++++++.++++.+|.|..+|.
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~----------------------~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~ 184 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRK----------------------WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS 184 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999 8888888888 999999999999999999999
Q ss_pred HHHHHHHHhcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-HHHHHHHhhC
Q 013821 362 QYAKLVWELHHD-----HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS-KSSDQFQQVA 422 (436)
Q Consensus 362 ~la~~~~~~g~d-----~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~l~ 422 (436)
+.+.++..+++. ++++++++.+++..+|.+..+|..++.++.+.|+..+++ ..+.+++.+.
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 999999887642 789999999999999999999999999999999966644 4666666654
No 96
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=8.1e-18 Score=143.65 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=61.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHH
Q 013821 255 YNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQ 334 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 334 (436)
+++++.++|+++.+++.+|.+++..++ +++|+.+|++++.++|+++.+|.++| .++.
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~P~~~~~~~~lg----------------------~~~~ 81 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIYDFYNVDYIMGLA----------------------AIYQ 81 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHH
Confidence 444444555555555555555555543 55555555555555555555555555 5555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 335 SKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
.+|++++|+.+|+++++++|+++.+|+++|.++..+|+ +++|+..|++++++.|+
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~-~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-PLKAKECFELVIQHSND 136 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCC
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC
Confidence 55555555555555555555555555555555555555 55555555555555554
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=9.5e-18 Score=143.21 Aligned_cols=121 Identities=11% Similarity=0.027 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
+-.+-..++++++++|++..+++.+| .++...|++++|+.+|++++.++|.++.+|++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg----------------------~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 75 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYA----------------------YDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMG 75 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34444578889999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 363 YAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 363 la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
+|.++..+|+ +++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+..
T Consensus 76 lg~~~~~~g~-~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 76 LAAIYQIKEQ-FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcc-HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999 99999999999999999999999999999999999999999999999998765
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.72 E-value=1.8e-16 Score=142.99 Aligned_cols=176 Identities=14% Similarity=0.065 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR---DQHRALTYFE 291 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---d~~~A~~~~~ 291 (436)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. ++ ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4678889998886 68899999999999999999999999999875 688999999988876 42 6999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 013821 292 RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQS----KGDLEGAEEYFSRAILANP--GDGEIMSQYAK 365 (436)
Q Consensus 292 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 365 (436)
++++ +.++.+++++| .+|.. .+++++|+.+|+++++..+ .++.++++||.
T Consensus 78 ~A~~--~g~~~a~~~Lg----------------------~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLA----------------------RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133 (212)
T ss_dssp HHHH--TTCHHHHHHHH----------------------HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHH----------------------HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 9954 57899999999 66665 7899999999999998887 35899999999
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-----ChHHHHHHHHHHHhh
Q 013821 366 LVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWET-E-----EDEDDSKSSDQFQQV 421 (436)
Q Consensus 366 ~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~~~~al~l 421 (436)
+|.. .++ +++|+.+|+++++. |.++.++.++|.+|... | ++++|+.+|+++.+.
T Consensus 134 ~y~~g~g~~~d-~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 134 IYASGVHGPED-DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHTSSSSCC-HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCC-HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 9988 666 99999999999988 66778899999998865 3 899999999999887
No 99
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=1e-17 Score=162.29 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=144.9
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 013821 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---------------GESWMQYAK 274 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 274 (436)
.++++++|+..|++++..+|.++.++..+|.+++..|++++|+..|++++.++|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 275 LVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 354 (436)
++...++ +++|+.+|+++++++|++..+++.+| .++..+|++++|+.+|+++++++|
T Consensus 205 ~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg----------------------~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 205 CHLKLQA-FSAAIESCNKALELDSNNEKGLSRRG----------------------EAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHHCC
Confidence 9999985 99999999999999999999999999 899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 013821 355 GDGEIMSQYAKLVWELHHDHDKA-LCYFERAVQA 387 (436)
Q Consensus 355 ~~~~~~~~la~~~~~~g~d~~eA-~~~~~~al~~ 387 (436)
++..++..++.++..+|+ +++| ...|++++..
T Consensus 262 ~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRR-QLAREKKLYANMFER 294 (336)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999 9988 5677777654
No 100
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.72 E-value=2.5e-17 Score=161.83 Aligned_cols=211 Identities=11% Similarity=0.068 Sum_probs=179.4
Q ss_pred cCCCChHHHHHhhcCCCCC-----CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHH
Q 013821 177 ERPVSPPMYLAMGLGISVP-----GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC-------HPLLLRNYAQLLQK 244 (436)
Q Consensus 177 ~~p~~a~~~~~~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------~~~~~~~la~~~~~ 244 (436)
.+++.|..++..++.+... ..+.++..+|.++...|++++|+.+++++++..+. ...++..+|.+|..
T Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 196 (383)
T 3ulq_A 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD 196 (383)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence 4667889999999887331 24578999999999999999999999999997443 34689999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHH
Q 013821 245 KGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAAL-----AA-PQDSNILAAYACFLW 312 (436)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~ 312 (436)
.|++++|+.+|++++++.+.. ..++.++|.++...++ +++|+.+|+++++ .+ |....++..+|.++.
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 999999999999999885543 3589999999999975 9999999999999 46 778899999999999
Q ss_pred HccCchHHHHHHHHHHHH-----------------hHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013821 313 EMEDDGEDDKAQEEHIQV-----------------LPIQSKGD---LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~-----------------~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
..|++++|...+++++.. .++...|+ +++|+.++++. ...|....++..+|.++..+|+
T Consensus 276 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~ 354 (383)
T 3ulq_A 276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKN 354 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999977764 56677788 78888888776 3334456789999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 013821 373 DHDKALCYFERAVQASPA 390 (436)
Q Consensus 373 d~~eA~~~~~~al~~~p~ 390 (436)
+++|+.+|++++++...
T Consensus 355 -~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 355 -FQKASAYFLKVEQVRQL 371 (383)
T ss_dssp -HHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 99999999999987543
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.72 E-value=5.5e-17 Score=154.95 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=94.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHH
Q 013821 239 AQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--D----SNILAA 306 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~----~~~~~~ 306 (436)
|.+|...|++++|+.+|.+++++.+.. ..++..+|.+|...++ +++|+.+|++++++.+. + ..++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR-MPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666666666666666654321 3455666666655553 66666666666665322 1 233444
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCY 380 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~ 380 (436)
+| .+|.. |++++|+.+|++++++.+.. ..++.++|.++..+|+ +++|+.+
T Consensus 122 lg----------------------~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~ 177 (307)
T 2ifu_A 122 AG----------------------KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAAS 177 (307)
T ss_dssp HH----------------------HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HH----------------------HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 44 55555 66666666666666665432 3456666666666666 6666666
Q ss_pred HHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 381 FERAVQASPAD------SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 381 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
|++++.+.|.+ ..++..++.++..+|++++|+.+|++++ +.|.+.
T Consensus 178 ~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 66666654432 1345556666666666666666666666 666554
No 102
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.71 E-value=1e-17 Score=156.37 Aligned_cols=190 Identities=10% Similarity=-0.089 Sum_probs=169.7
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------
Q 013821 210 NFDDSAEAEEYYKRMIDEYPCHPLLLRNY-------AQLLQKKGDLYRAEDYYNHATMADPGDG---------------- 266 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~P~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------- 266 (436)
.-+++.+|.+.|.+++..+|+..++|..+ +.++...+++.+++..+++++.+.|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 35999999999999999999999999999 8999999999999999999999877543
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821 267 -----ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 267 -----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
.+...++.++...++ |++|.+.|+.++...|++. +++.++ .++.+.++|++
T Consensus 98 v~~r~dl~LayA~~L~~~g~-y~eA~~~l~~~~~~~p~~~-~~~~~a----------------------~l~~~~~r~~d 153 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGN-YADAMEALEAAPVAGSEHL-VAWMKA----------------------VVYGAAERWTD 153 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTC-HHHHHHHHTSSCCTTCHHH-HHHHHH----------------------HHHHHTTCHHH
T ss_pred cCCHhHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCchH-HHHHHH----------------------HHHHHcCCHHH
Confidence 445568888888875 9999999999999999888 999999 88999999999
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCChHHHHHHHH
Q 013821 342 AEEYFSRAILANPGD--GEIMSQYAKLVWELHHDHDKALCYFERAVQAS--PA-DSHVLAAYACFLWETEEDEDDSKSSD 416 (436)
Q Consensus 342 A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~~~ 416 (436)
|+.+|++++...+.. ..+++++|.++..+|+ +++|+.+|++++... |. ...+++.+|.++.++|+.++|...|+
T Consensus 154 A~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~-~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 154 VIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL-FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999887653221 4589999999999999 999999999998544 55 56799999999999999999999999
Q ss_pred HHHhhCCC
Q 013821 417 QFQQVAPI 424 (436)
Q Consensus 417 ~al~l~p~ 424 (436)
+++..+|.
T Consensus 233 ~a~a~~P~ 240 (282)
T 4f3v_A 233 WLQTTHPE 240 (282)
T ss_dssp HHHHHSCC
T ss_pred HHHhcCCc
Confidence 99999998
No 103
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=1.9e-17 Score=156.32 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=162.4
Q ss_pred chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 197 FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLV 276 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 276 (436)
.+..+..+|..+...|++++|+.+|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 277 WELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 277 ~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
...++ +++|+..|+++++++|++...+.... .... +..++..+........|.+
T Consensus 83 ~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~----------------------~~~~---~~~~~~~~~~~~~~~~~~~ 136 (281)
T 2c2l_A 83 LEMES-YDEAIANLQRAYSLAKEQRLNFGDDI----------------------PSAL---RIAKKKRWNSIEERRIHQE 136 (281)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHTTCCCCSHH----------------------HHHH---HHHHHHHHHHHHHTCCCCC
T ss_pred HHcCC-HHHHHHHHHHHHHhCccchhhHHHHH----------------------HHHH---HHHHHHHHHHHHHHHHhhh
Confidence 99885 99999999999999987643222111 1111 1222233333444567778
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhC
Q 013821 357 GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWET-EEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 357 ~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~l~ 422 (436)
..+...++.++ .|+ +++|++.++++++.+|++......++.++.+. +.+++|.+.|.++.+..
T Consensus 137 ~~i~~~l~~l~--~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 137 SELHSYLTRLI--AAE-RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp CHHHHHHHHHH--HHH-HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHH--HHH-HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 88888888765 577 99999999999999999888888888877776 67889999999887643
No 104
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.71 E-value=1.8e-15 Score=145.53 Aligned_cols=223 Identities=9% Similarity=0.035 Sum_probs=172.4
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFD-DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK-G-DLYRAEDY 254 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~-g-~~~~A~~~ 254 (436)
...++..++..++.+++ .+..+|...+.++...| .+++++.++++++..+|++..+|..++.++... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34457777788888888 78888888888888877 488888888888888888888888888888776 6 77888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHH
Q 013821 255 YNHATMADPGDGESWMQYAKLVWELHRDQH--------RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEE 326 (436)
Q Consensus 255 ~~~al~~~p~~~~~~~~la~~~~~~~~d~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 326 (436)
+.++++.+|.+..+|...+.++...++ ++ +++++++++++.+|.|..+|..++
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~------------------ 208 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW------------------ 208 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH------------------
Confidence 888888888888888888888777765 55 788888888888888888888888
Q ss_pred HHHHhHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------------------HHHHHHH
Q 013821 327 HIQVLPIQSKGD-------LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHD-------------------HDKALCY 380 (436)
Q Consensus 327 ~~~~~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d-------------------~~eA~~~ 380 (436)
.++...++ ++++++++++++..+|++..+|+++..++...|+. ..+-...
T Consensus 209 ----~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (349)
T 3q7a_A 209 ----YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284 (349)
T ss_dssp ----HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred ----HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence 55555554 78999999999999999999999999999888773 1223333
Q ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-hhCCC
Q 013821 381 FERAVQAS------PADSHVLAAYACFLWETEEDEDDSKSSDQFQ-QVAPI 424 (436)
Q Consensus 381 ~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~l~p~ 424 (436)
+...+... +..+.++..++.+|.+.|+.++|++.++... +.+|.
T Consensus 285 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp -CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 33333222 4677899999999999999999999999976 55664
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=3.2e-17 Score=169.54 Aligned_cols=189 Identities=14% Similarity=0.058 Sum_probs=172.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 013821 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGD----------LYRAEDYYNHATMADPGDGESWMQYAKLVWELHR- 281 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~- 281 (436)
..++|++.+++++..+|++..+|..++.++...|+ +++|+++++++++.+|++..+|+..+.++...+.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34788999999999999999999999999999998 9999999999999999999999999999988872
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-CHHHHHHHHHHHHHhCCCCHHHH
Q 013821 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-DLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
++++|+++++++++.+|.+..+|...+ .++...| .++++++++.++++.+|.+..+|
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~----------------------~~l~~l~~~~~~el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRR----------------------FVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHH----------------------HHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence 379999999999999999999999999 7888888 89999999999999999999999
Q ss_pred HHHHHHHHHh--------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH------------HHHH
Q 013821 361 SQYAKLVWEL--------------HHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED------------DSKS 414 (436)
Q Consensus 361 ~~la~~~~~~--------------g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e------------A~~~ 414 (436)
.+++.++..+ +. +++|++++.+|+.++|++..+|..++.++.+.+++++ |+..
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~-~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 260 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENV-LLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVC 260 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHH-HHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEE
T ss_pred HHHHHHHHhhcccccccccccccHHH-HHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEE
Confidence 9999999986 55 8999999999999999999999999999999998766 4455
Q ss_pred HHHHHhhCCC
Q 013821 415 SDQFQQVAPI 424 (436)
Q Consensus 415 ~~~al~l~p~ 424 (436)
|.+++.+.|.
T Consensus 261 f~~~i~~~~~ 270 (567)
T 1dce_A 261 FSRPLTVGSR 270 (567)
T ss_dssp EEEEECTTBT
T ss_pred eccceecccc
Confidence 6666665554
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=2.7e-15 Score=122.51 Aligned_cols=133 Identities=22% Similarity=0.417 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
+++.+|.++...|++++|+.+++++++.+|.+..++..+|.++...++ +++|+.+|++++...|.+..++..++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~----- 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEAWYNLG----- 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH-----
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHCCCchHHHHHHH-----
Confidence 345555555555555555555555555555555555555555555442 55555555555555555555555555
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
.++...|++++|+.++++++...|.+..++..+|.++...|+ +++|+.++++++..+|+
T Consensus 77 -----------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 77 -----------------NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPR 135 (136)
T ss_dssp -----------------HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSTT
T ss_pred -----------------HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc-HHHHHHHHHHHHccCCC
Confidence 455555555555555555555555555555555555555555 55555555555555543
No 107
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.70 E-value=1.2e-15 Score=148.93 Aligned_cols=224 Identities=16% Similarity=0.081 Sum_probs=183.4
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GE 267 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 267 (436)
..+..+|.++...|++++|+.++++++...|... .++..+|.++...|++++|+.++++++.+.+.. ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3456678888899999999999999999887553 367899999999999999999999999876543 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH---------
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALAA--------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------- 330 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------- 330 (436)
++..+|.++...|+ +++|+.+|++++++. |....++.++|.++...|++++|...+.+.+..
T Consensus 95 ~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 95 SLIQQSEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 47789999988875 999999999999875 334567788999999999999999999876653
Q ss_pred --------hHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----
Q 013821 331 --------LPIQSKGDLEGAEEYFSRAILANPG--DGEIMS-----QYAKLVWELHHDHDKALCYFERAVQASPAD---- 391 (436)
Q Consensus 331 --------~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~-----~la~~~~~~g~d~~eA~~~~~~al~~~p~~---- 391 (436)
.++...|++++|+.++++++.+.+. ....+. .++.++...|+ +++|..++++++...|..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD-KAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC-HHHHHHHHHhCCCCCCCcchhh
Confidence 6788899999999999999987432 211221 34455778999 999999999998877653
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
...+..++.++...|++++|+..+++++...+.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999887543
No 108
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.70 E-value=5.8e-17 Score=137.76 Aligned_cols=118 Identities=13% Similarity=0.012 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...++ +++|+.+|++++.++|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCC
Confidence 345666666666666666677777777777777666666666666666666666666666653 6666666666666666
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+++.+++.+| .++...|++++|+.+|+++++++|+++..
T Consensus 87 ~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAA----------------------ECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 6666666666 66666666666666666666666655443
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.69 E-value=2.4e-15 Score=122.85 Aligned_cols=135 Identities=23% Similarity=0.367 Sum_probs=128.3
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.+|..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 279 LHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
.++ +++|+..++++++..|.+..++..++ .++...|++++|+.+|++++..+|.+
T Consensus 82 ~~~-~~~A~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGD-YDEAIEYYQKALELDPRSAEAWYNLG----------------------NAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHHccHHHHHHHHHHHHccCCCC
Confidence 875 99999999999999999999999999 88889999999999999999998863
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=9.2e-17 Score=136.53 Aligned_cols=120 Identities=11% Similarity=-0.015 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821 251 AEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
+...|++++.++|.+..+++.+|.+++..++ +++|+..|++++..+|.++.+|+.+|
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg---------------------- 62 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVLDHYDSRFFLGLG---------------------- 62 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCcccHHHHHHHH----------------------
Confidence 3456788888888888899999988888875 99999999999999999999999888
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHV 394 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~ 394 (436)
.++...|++++|+.+|++++.++|+++.+++++|.++..+|+ +++|+..|++++++.|+++..
T Consensus 63 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE-LAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCCcc
Confidence 888888999999999999999999999999999999999988 999999999999988877644
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=1.8e-15 Score=136.44 Aligned_cols=186 Identities=17% Similarity=0.089 Sum_probs=159.0
Q ss_pred ChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 013821 181 SPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG----DLYRAEDYYN 256 (436)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g----~~~~A~~~~~ 256 (436)
++..++.++... +++.++..+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455666666654 67889999999999999999999999999886 589999999999998 7 9999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821 257 HATMADPGDGESWMQYAKLVWE----LHRDQHRALTYFERAALAAP--QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 257 ~al~~~p~~~~~~~~la~~~~~----~~~d~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
++++ +.++.+++.+|.+|.. . +|+++|+.+|+++++..+ .++.+++++|
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg---------------------- 132 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGA-TDVAHAITLLQDAARDSESDAAVDAQMLLG---------------------- 132 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTSHHHHHHHHHHH----------------------
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCCcchHHHHHHHH----------------------
Confidence 9964 5799999999999876 4 469999999999999988 4599999999
Q ss_pred hHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 331 LPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH-----HDHDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 331 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~d~~eA~~~~~~al~~~p~~~~~~~~la~ 400 (436)
.+|.. .+++++|+.+|+++++. +.++.++++||.+|..-. .|+++|+.+|+++++... ..+...++.
T Consensus 133 ~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 133 LIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 77777 78999999999999998 677889999999998642 249999999999999854 455555543
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.67 E-value=1.2e-15 Score=145.67 Aligned_cols=187 Identities=10% Similarity=0.063 Sum_probs=153.3
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH------PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--D----GE 267 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~ 267 (436)
.+...|.++...|++++|+.+|.+++++.+.. ..++..+|.+|..+|++++|+.+|++++++.+. + ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44555788999999999999999999986532 468999999999999999999999999998543 2 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
++..+|.+|.. + ++++|+.+|++++++.+.. ..++.++| .++..+|++++
T Consensus 118 ~~~~lg~~~~~-g-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~ 173 (307)
T 2ifu_A 118 ALDRAGKLMEP-L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKAS----------------------RLLVRQQKFDE 173 (307)
T ss_dssp HHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred HHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH----------------------HHHHHcCCHHH
Confidence 88899999877 5 6999999999999987653 45677777 88999999999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHH
Q 013821 342 AEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADS-----HVLAAYACFLWETEEDED 410 (436)
Q Consensus 342 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~e 410 (436)
|+.+|++++.+.|.+ ..++..+|.++..+|+ +++|+.+|++++ ++|... ..+..++..+ ..|+.+.
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 999999999986643 3478889999999999 999999999999 999754 2344555544 5677655
Q ss_pred HHH
Q 013821 411 DSK 413 (436)
Q Consensus 411 A~~ 413 (436)
+..
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 113
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=5.3e-15 Score=149.05 Aligned_cols=189 Identities=15% Similarity=0.120 Sum_probs=123.4
Q ss_pred hhhhHHhhhhhCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 200 AGEVVDLIMPNFD---DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKK----GDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 200 ~~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
++..+|.++...| ++++|+.+|+++++..|..+..++.+|.+|... +++++|+.+|+++. |.++.+++.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 5555555555555 555555555555555555555555555555433 45555555555554 5555555555
Q ss_pred HHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC-----CHHHHHHH
Q 013821 273 AKLVW--ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG-----DLEGAEEY 345 (436)
Q Consensus 273 a~~~~--~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g-----~~~~A~~~ 345 (436)
|.+|+ ...+++++|+.+|+++++. +++.+++++| .+|. .| ++++|+.+
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg----------------------~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLG----------------------KLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHH----------------------HHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH----------------------HHHH-cCCCCCCCHHHHHHH
Confidence 55533 2223455555555555433 2455555555 5555 45 99999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHH
Q 013821 346 FSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQ 417 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~ 417 (436)
|+++. +.++.++++||.+|.. ..+ +++|+.+|+++.+ +.++.+.+++|.+|.. ..++.+|..+|++
T Consensus 310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 310 FEKAV---GREVAADYYLGQIYRRGYLGKVY-PQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHTTT---TTCHHHHHHHHHHHHTTTTSSCC-HHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHh---CCCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99998 8899999999988876 224 9999999999876 4567889999999885 4588999999999
Q ss_pred HHhhC
Q 013821 418 FQQVA 422 (436)
Q Consensus 418 al~l~ 422 (436)
+.+..
T Consensus 384 A~~~g 388 (452)
T 3e4b_A 384 AKAQD 388 (452)
T ss_dssp HHTTC
T ss_pred HHHCC
Confidence 88764
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.67 E-value=3e-16 Score=132.01 Aligned_cols=123 Identities=17% Similarity=0.046 Sum_probs=77.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 219 EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 219 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...++ +++|+.+|++++.++|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-YEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCC
Confidence 345556666666666666666666666666666666666666666666666666666666653 6666666666666666
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
+++.+++.+| .++...|++++|+.+|+++++++|+++.......
T Consensus 84 ~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 84 NEPRFPFHAA----------------------ECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp TCTHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred CCcHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 6666666666 6666666666666666666666666554443333
No 115
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.66 E-value=1.8e-16 Score=141.03 Aligned_cols=182 Identities=12% Similarity=0.020 Sum_probs=117.8
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 281 (436)
.+.+......|++++|.+.++......+..+..+..+|.+++..|++++|+..|++++.+.|.++..... . ...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~----~~~ 81 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--I----LLD 81 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--H----HHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--h----HHH
Confidence 3444455556666666666666666555566666667777777777777777777666666654321100 0 000
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 282 DQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMS 361 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (436)
.. +.+ ...++.++| .++...|++++|+.+|+++++++|.+..+++
T Consensus 82 -~~-------~~~-----~~~~~~~la----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 126 (198)
T 2fbn_A 82 -KK-------KNI-----EISCNLNLA----------------------TCYNKNKDYPKAIDHASKVLKIDKNNVKALY 126 (198)
T ss_dssp -HH-------HHH-----HHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred -HH-------HHH-----HHHHHHHHH----------------------HHHHHhcCHHHHHHHHHHHHHhCcccHHHHH
Confidence 00 000 136777888 8889999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-HHHHHHHhhCCCC
Q 013821 362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS-KSSDQFQQVAPIR 425 (436)
Q Consensus 362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~l~p~~ 425 (436)
.+|.++..+|+ +++|+.+|+++++++|++..++..++.++..+++..++. ..|.+.+.....+
T Consensus 127 ~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 190 (198)
T 2fbn_A 127 KLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLY 190 (198)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 99999999999 999999999999999999999999999999999888887 5566666554443
No 116
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.65 E-value=1e-15 Score=133.24 Aligned_cols=131 Identities=10% Similarity=0.064 Sum_probs=113.3
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCH--
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL-VWELHRDQ-- 283 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~d~-- 283 (436)
-+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +...+ ++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-QHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-Ccch
Confidence 345569999999999999999999999999999999999999999999999999999999999999999 55655 47
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 284 HRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIM 360 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (436)
++|+.+|+++++.+|++..+++.+| .++...|++++|+.+|+++++.+|.+....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLA----------------------SDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999999999999999999 888889999999999999999999875544
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.65 E-value=5e-16 Score=130.61 Aligned_cols=125 Identities=16% Similarity=0.015 Sum_probs=102.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013821 253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
..|++++.++|.+...++.+|.+++..++ +++|+..|++++..+|+++.+|+.+| .+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg----------------------~~ 61 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK-WDDAQKIFQALCMLDHYDARYFLGLG----------------------AC 61 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhCCccHHHHHHHH----------------------HH
Confidence 45677788888888888888888888874 89999999999999998888888888 88
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+...|++++|+.+|++++.++|+++.+++++|.++..+|+ +++|+.+|+++++++|+++........+
T Consensus 62 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 62 RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD-LDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 8888888999999999999999888888889999888888 8999999999888888776554444333
No 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.3e-15 Score=121.18 Aligned_cols=113 Identities=18% Similarity=0.080 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+..+..+|..+...|++++|+..|+++++++|.++.+|..+|.++...++ +++|+..|+++++++|++..+++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg--- 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKA--- 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHH---
Confidence 34455555555555555555555555555555555555555555544442 55555555555555555555555555
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 013821 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN------PGDGEIMSQYAKLV 367 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 367 (436)
.++...|++++|+.+|+++++++ |.+..++..++.+.
T Consensus 80 -------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 80 -------------------TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred -------------------HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 44444555555555555555555 44444444444443
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.64 E-value=1e-14 Score=130.32 Aligned_cols=133 Identities=16% Similarity=0.090 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
..++.+|.++...|++++|+..|++++ +| ++.+++.+|.++...++ +++|+.+|+++++++|++..++..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~lg---- 78 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN-MTEAEKAFTRSINRDKHLAVAYFQRG---- 78 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchHHHHHHH----
Confidence 346777888888888888888888874 33 67788888888877764 88888888888888888888888888
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCCHHH
Q 013821 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG----------------EIMSQYAKLVWELHHDHDK 376 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~d~~e 376 (436)
.++...|++++|+.+|+++++..|.+. .+++++|.++..+|+ +++
T Consensus 79 ------------------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 139 (213)
T 1hh8_A 79 ------------------MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKK 139 (213)
T ss_dssp ------------------HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHH
T ss_pred ------------------HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHH
Confidence 777888888888888888888777766 999999999999999 999
Q ss_pred HHHHHHHHHHhCCCCH
Q 013821 377 ALCYFERAVQASPADS 392 (436)
Q Consensus 377 A~~~~~~al~~~p~~~ 392 (436)
|+..|++++++.|++.
T Consensus 140 A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 140 AEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHcCcccc
Confidence 9999999999999864
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.64 E-value=2e-14 Score=122.63 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...++ +++|+.+|+++++.+|.+..++..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~a---- 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRA---- 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHH----
Confidence 4455555555555555555555555555555555555555555554442 55555555555555555555555555
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCCHHHHHHHHHHHH
Q 013821 313 EMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL--VWELHHDHDKALCYFERAV 385 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~d~~eA~~~~~~al 385 (436)
.++...|++++|+.+|+++++++|.+..++..++.+ +...|+ +++|+..+.++.
T Consensus 89 ------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ------------------ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKR 144 (166)
T ss_dssp ------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred ------------------HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcccchH
Confidence 444555555555555555555555555544333332 444455 555555555443
No 121
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.64 E-value=5.8e-16 Score=137.65 Aligned_cols=110 Identities=16% Similarity=0.044 Sum_probs=81.6
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP----------------LLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
+..+..+|..++..|++++|+.+|++++...|.++ .++.++|.++...|++++|+.++++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999998876 66666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|.+..+++.+|.++...++ +++|+.+|+++++++|++..++..++
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 66666666666666666553 66666666666666666666666666
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=8.7e-15 Score=130.83 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=123.7
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
..+..+|.++...|++++|+..|++++ +| ++.++..+|.++...|++++|+.+|++++..+|.++.+++.+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 457789999999999999999999996 44 789999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821 279 LHRDQHRALTYFERAALAAPQDS----------------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 279 ~~~d~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
.++ +++|+.+|+++++..|.+. .+++.+| .++...|++++|
T Consensus 84 ~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~~~A 140 (213)
T 1hh8_A 84 TEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA----------------------FMYAKKEEWKKA 140 (213)
T ss_dssp TTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH----------------------HHHHHTTCHHHH
T ss_pred ccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHH----------------------HHHHHccCHHHH
Confidence 875 9999999999999888876 8999999 889999999999
Q ss_pred HHHHHHHHHhCCCC
Q 013821 343 EEYFSRAILANPGD 356 (436)
Q Consensus 343 ~~~~~~al~~~p~~ 356 (436)
+.+|+++++++|++
T Consensus 141 ~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 141 EEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcCccc
Confidence 99999999999986
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.63 E-value=2.2e-14 Score=135.65 Aligned_cols=170 Identities=12% Similarity=0.018 Sum_probs=142.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 013821 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG------ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-- 300 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-- 300 (436)
|.....+...+..+...|++++|++.+.++++..+... ..++.+|.++...+ ++++|+.+|+++++..+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTTCCCSSC
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCc
Confidence 44456677888899999999999999999999887754 33556776666655 5999999999999876543
Q ss_pred ----HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHH
Q 013821 301 ----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAI---LANPGDG----EIMSQYAKLVWE 369 (436)
Q Consensus 301 ----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~ 369 (436)
..++..+| .+|...|++++|+.+|++++ +..|++. .+++++|.++..
T Consensus 151 ~~~~~~~~~~lg----------------------~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 151 VYQNLYIENAIA----------------------NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp TTHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 55777888 89999999999999999999 4566643 689999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCChHHH-HHHHHHHHhhC
Q 013821 370 LHHDHDKALCYFERAVQASPA------DSHVLAAYACFLWETEEDEDD-SKSSDQFQQVA 422 (436)
Q Consensus 370 ~g~d~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA-~~~~~~al~l~ 422 (436)
+|+ +++|+.++++++.+.+. ...++.++|.++..+|++++| ..+|++++.+.
T Consensus 209 ~~~-y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 209 DSR-YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTC-HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred Hhh-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 999 99999999999987643 268899999999999999999 78899999875
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1e-14 Score=119.43 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013821 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
..+..+..+|..++..++ +++|+..|+++++++|+++.++.++| .++...|++++|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a----------------------~~~~~~~~~~~A~ 58 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPEDARGYSNRA----------------------AALAKLMSFPEAI 58 (126)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHhcCHHHHH
Confidence 456778889999888874 99999999999999999999999999 8888899999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Q 013821 344 EYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWET 405 (436)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~~ 405 (436)
..|+++++++|+++.+++.+|.++..+|+ +++|+..|+++++++ |.+..++..++.+...+
T Consensus 59 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 59 ADCNKAIEKDPNFVRAYIRKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 999999999999999 88888888888776543
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=2.2e-14 Score=122.34 Aligned_cols=133 Identities=17% Similarity=0.111 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHH
Q 013821 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEY 345 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~ 345 (436)
+..+..+|.+++..+ ++++|+..|+++++.+|.+..++..+| .++...|++++|+.+
T Consensus 13 ~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a----------------------~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 13 AEELKTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRS----------------------LAYLRTECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHH----------------------HHHHHcCCHHHHHHH
Confidence 567889999999887 499999999999999999999999999 888999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHCCChHHHHHHHHHHHhhC
Q 013821 346 FSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF--LWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~eA~~~~~~al~l~ 422 (436)
|+++++.+|.++.+++.+|.++..+|+ +++|+.+|+++++++|.+..++..++.+ +...|++++|+..+.++..+.
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGK-FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999999999999999 9999999999999999999888555544 888999999999999887653
No 126
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.63 E-value=3.2e-15 Score=146.62 Aligned_cols=168 Identities=13% Similarity=0.009 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADP------GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------ 300 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------ 300 (436)
..++.+|..+...|++++|+.+|++++.+.+ ..+.+++.+|.++...++ +++|+.++++++++.+..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ-THVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhCCCchhh
Confidence 3677899999999999999999999998732 246789999999999985 999999999999986542
Q ss_pred -HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCC
Q 013821 301 -SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQYAKLVWELHHD 373 (436)
Q Consensus 301 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~d 373 (436)
..++..+| .++...|++++|+.+|++++++.+ ....++.++|.++..+|+
T Consensus 181 ~~~~~~~lg----------------------~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~- 237 (378)
T 3q15_A 181 TIQSLFVIA----------------------GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD- 237 (378)
T ss_dssp HHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-
Confidence 33556666 888888999999999999988743 124578889999999998
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 374 HDKALCYFERAVQ-----ASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 374 ~~eA~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
+++|+.+|++++. .+|....++..+|.++..+|++++|+.++++++.+.+.
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998 67777788899999999999999999999999988644
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.62 E-value=4.6e-15 Score=129.06 Aligned_cols=130 Identities=9% Similarity=0.116 Sum_probs=114.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
+...|++++|+..++++++.+|.++.+|+.+|.++...++ +++|+.+|+++++++|++..++..+|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la------------- 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND-YSNSLLAYRQALQLRGENAELYAALA------------- 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCSCHHHHHHHH-------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHH-------------
Confidence 3567889999999999999999999999999999988874 99999999999999999999999999
Q ss_pred HHHHHHHHHhH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 013821 322 KAQEEHIQVLP-IQSKGDL--EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL 395 (436)
Q Consensus 322 ~~~~~~~~~~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~ 395 (436)
.+ +...|++ ++|+.+|+++++.+|.+..+++.+|.++..+|+ +++|+..|+++++++|++....
T Consensus 86 ---------~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 86 ---------TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN-YAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp ---------HHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCTTSCHH
T ss_pred ---------HHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCCCCccHH
Confidence 77 7788998 999999999999999999999999999999999 9999999999999999876443
No 128
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=2.6e-14 Score=143.98 Aligned_cols=194 Identities=15% Similarity=0.126 Sum_probs=157.0
Q ss_pred chhhhhhHHhhhhhCCCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHH
Q 013821 197 FDDAGEVVDLIMPNFDDSA----EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG---DLYRAEDYYNHATMADPGDGESW 269 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~g~~~----~A~~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 269 (436)
.+.++..+|.++...+.++ ++..+++.+...+| .+++.+|.+|...| ++++|+.+|+++.+..+.....+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 3457778888888777444 44444555544444 38899999999999 89999999999999999999888
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013821 270 MQYAKLVWELH---RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 270 ~~la~~~~~~~---~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
+.+|.+|.... +++++|+.+|+++. |+++.+++++|.++... ...+++++|+.+|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~-------------------~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDF-------------------PELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS-------------------GGGCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC-------------------CCCCCHHHHHHHH
Confidence 89998875431 46899999999988 88899999999432210 3589999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHH
Q 013821 347 SRAILANPGDGEIMSQYAKLVWELH----HDHDKALCYFERAVQASPADSHVLAAYACFLWE----TEEDEDDSKSSDQF 418 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g----~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~a 418 (436)
+++.+. .++.+++++|.+|. .| .|+++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++
T Consensus 275 ~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 275 DNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 999865 48999999999998 56 13999999999998 8999999999999887 44999999999999
Q ss_pred Hhh
Q 013821 419 QQV 421 (436)
Q Consensus 419 l~l 421 (436)
.+.
T Consensus 349 a~~ 351 (452)
T 3e4b_A 349 ARN 351 (452)
T ss_dssp HTT
T ss_pred Hhh
Confidence 885
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.61 E-value=1e-16 Score=149.50 Aligned_cols=197 Identities=12% Similarity=-0.070 Sum_probs=172.4
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhH-------HhhhhhCCCHHHHHHHHHHHHHhCCCCH------------------
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVV-------DLIMPNFDDSAEAEEYYKRMIDEYPCHP------------------ 232 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~P~~~------------------ 232 (436)
++..+...|.++..+++ +...+|.++ +.++...+++.+++..+++.+.+.|...
T Consensus 21 d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 55578889999999999 899999999 8999999999999999999999877543
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 013821 233 ---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD--SNILAAY 307 (436)
Q Consensus 233 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~--~~~~~~l 307 (436)
++...++.++...|+|++|.+.|..++...|++. +.+.+|.+++..++ +++|+.+|++++...+.. ..+++.+
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r-~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER-WTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC-HHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC-HHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 4556689999999999999999999999999988 99999999999885 999999999886653221 3578889
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN--PG-DGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
| .++..+|++++|+.+|++++... |. ..++++++|.++.++|+ .++|...|+++
T Consensus 178 G----------------------~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a 234 (282)
T 4f3v_A 178 G----------------------VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-ESAAVALLEWL 234 (282)
T ss_dssp H----------------------HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred H----------------------HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 9 89999999999999999998654 55 66899999999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHH
Q 013821 385 VQASPADSHVLAAYACF 401 (436)
Q Consensus 385 l~~~p~~~~~~~~la~~ 401 (436)
+..+|+ ..++..|...
T Consensus 235 ~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 235 QTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHSCC-HHHHHHHHCT
T ss_pred HhcCCc-HHHHHHHhCC
Confidence 999999 8877776543
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.61 E-value=1.2e-14 Score=125.02 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
++..++.+|.++...|++++|+.+|+++++++|.++.+|+.+|.++...++ +++|+.+|+++++++|++..+++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg-- 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-HEKAAEDAELATVVDPKYSKAWSRLG-- 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHH--
Confidence 345555556666666666666666666666555555555555555555543 55555555555555555555555555
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
.++..+|++++|+.+|+++++++|++..+|+.++
T Consensus 87 --------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 --------------------LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp --------------------HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred --------------------HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 5555555555555555555555555555444444
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.61 E-value=5.1e-14 Score=133.14 Aligned_cols=165 Identities=12% Similarity=-0.034 Sum_probs=141.3
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP------LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GE 267 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 267 (436)
.+...+..+...|++++|+..++++++..+... ..++.+|.++...|++++|+.+|++++...+.. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 455677788999999999999999999887654 346778899999999999999999999876543 66
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAA---LAAPQDS----NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
++..+|.+|...++ +++|+.+|++++ +..|++. .+++++| .+|..+|+++
T Consensus 157 ~~~~lg~~y~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg----------------------~~y~~~~~y~ 213 (293)
T 2qfc_A 157 IENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA----------------------KALYLDSRYE 213 (293)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH----------------------HHHHHTTCHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHH----------------------HHHHHHhhHH
Confidence 89999999999875 999999999999 5566643 5778888 8999999999
Q ss_pred HHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhC
Q 013821 341 GAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHDKA-LCYFERAVQAS 388 (436)
Q Consensus 341 ~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~eA-~~~~~~al~~~ 388 (436)
+|+.+|++++++.+. ...+++++|.++..+|+ +++| ..+|++++.+.
T Consensus 214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHH
Confidence 999999999988543 27899999999999999 9999 88899998753
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=2.1e-15 Score=142.19 Aligned_cols=168 Identities=11% Similarity=-0.004 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...++ +++|+..|+++++++|++..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999985 99999999999999999999999999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~ 388 (436)
.++..+|++++|+..|+++++++|++...+......... ..++..+........
T Consensus 80 ----------------------~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 80 ----------------------QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----IAKKKRWNSIEERRI 133 (281)
T ss_dssp ----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----HHHHHHHHHHHHTCC
T ss_pred ----------------------HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 889999999999999999999998764333322222222 233344444444567
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 389 PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
|.+..+...++.++ .|++++|++.|++++++.|..
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDD 168 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccch
Confidence 78888888887765 689999999999999998863
No 133
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=1.1e-14 Score=120.09 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+.++..+|.+++..|+|++|+.+|+++++++|.++.+|.++|.+|..+++ +++|+..|+++++++|++...+..++.++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK-FAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh-HHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34566667777777777777777777777777777777777777666654 77777777777777666554444444444
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
..+| .++..+|++++|+++|++++...|+ ++....+.
T Consensus 87 ~~lg---------------~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAG---------------NAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHH---------------HHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHH---------------HHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 4444 8888899999999999999998885 55554443
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=1.8e-14 Score=117.15 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 230 CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYAC 309 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~ 309 (436)
.+...+..+|.++...|++++|+..|++++..+|.++.++..+|.++...++ +++|+.+++++++..|++..++..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~- 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN-YAGAVQDCERAICIDPAYSKAYGRMG- 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc-hHHHHHHHHHHHhcCccCHHHHHHHH-
Confidence 3445556666666666666666666666666666666666666655555543 55666666655555555555555555
Q ss_pred HHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013821 310 FLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
.++...|++++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus 88 ---------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 ---------------------LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp ---------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555666666666665555555555555555555554
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-14 Score=118.29 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...++ +++|+.+|+++++.+|.+..++..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la--- 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE-FQLALKDCEECIQLEPTFIKGYTRKA--- 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCchHHHHHHH---
Confidence 34444444444444444444444444444444444444444444444432 44444444444444444444444444
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++...|++++|+.+|+++++.+|.+..++..++.++..+
T Consensus 92 -------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 -------------------AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444443
No 136
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.59 E-value=1.1e-15 Score=154.39 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=130.2
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---------------GESWMQYA 273 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la 273 (436)
...+++++|+..|+++++..|..+..+..+|.+++..|+|++|+..|+++++++|.+ ..+|+++|
T Consensus 245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999999999999998 68888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013821 274 KLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
.++..+++ +++|+.+|+++++++|++..+++.+| .+|..+|++++|+.+|+++++++
T Consensus 325 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~~g----------------------~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 MCYLKLRE-YTKAVECCDKALGLDSANEKGLYRRG----------------------EAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC-HHHHHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888875 99999999999999999999999988 88888889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 013821 354 PGDGEIMSQYAKLVWELHHDHDKALC-YFERA 384 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~eA~~-~~~~a 384 (436)
|++..++..++.++..+++ +++|.. .|.+.
T Consensus 382 P~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~ 412 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKE-HNERDRRIYANM 412 (457)
T ss_dssp ----CHHHHHHHHHHHHHH-HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9988899999999988888 777764 34433
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.59 E-value=3.1e-14 Score=115.77 Aligned_cols=125 Identities=16% Similarity=0.255 Sum_probs=116.9
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
.+|.+..++..+|.++...+ ++++|+..|++++...|++..++..+| .++...|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a----------------------~~~~~~~~~~ 63 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRA----------------------AAYSKLGNYA 63 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHH
T ss_pred cchhhhHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHH----------------------HHHHHhhchH
Confidence 34556788999999999887 499999999999999999999999999 8888999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
+|+.++++++..+|.+..++..+|.++..+|+ +++|+.+|+++++..|++..++..++.++..+|+++
T Consensus 64 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNK-HVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999 999999999999999999999999999999998763
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=7.8e-14 Score=144.15 Aligned_cols=164 Identities=11% Similarity=0.086 Sum_probs=151.3
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 243 QKKGDL-YRAEDYYNHATMADPGDGESWMQYAKLVWELHRD---------QHRALTYFERAALAAPQDSNILAAYACFLW 312 (436)
Q Consensus 243 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 312 (436)
...|++ ++|++.+.+++..+|++..+|+..+.++...+.+ +++|+++++++++.+|++..+|...+
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~---- 114 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC---- 114 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH----
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH----
Confidence 344554 6889999999999999999999999999998754 99999999999999999999999999
Q ss_pred HccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCC
Q 013821 313 EMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH-HDHDKALCYFERAVQASP 389 (436)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~d~~eA~~~~~~al~~~p 389 (436)
+++...+ +++++++++.++++.+|.+..+|.+.+.++..+| . ++++++++.++++.+|
T Consensus 115 ------------------w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~-~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 115 ------------------WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA-PAEELAFTDSLITRNF 175 (567)
T ss_dssp ------------------HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC-HHHHHHHHHTTTTTTC
T ss_pred ------------------HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHCC
Confidence 8888888 7899999999999999999999999999999999 6 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHC--------------CChHHHHHHHHHHHhhCCCChhHH
Q 013821 390 ADSHVLAAYACFLWET--------------EEDEDDSKSSDQFQQVAPIRQGAV 429 (436)
Q Consensus 390 ~~~~~~~~la~~~~~~--------------g~~~eA~~~~~~al~l~p~~~~~~ 429 (436)
.+..+|..++.++..+ +.+++|++++.+++.++|+.+.+-
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW 229 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 229 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999999885 557999999999999999876643
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.59 E-value=5.2e-14 Score=135.33 Aligned_cols=175 Identities=14% Similarity=0.146 Sum_probs=141.9
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG-DLYRAEDYYNHATMADPGDGESWMQYAK 274 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 274 (436)
....++..+..+....+..++|++++++++..+|++..+|..++.++...| .+++++.++++++..+|++..+|..++.
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 444667777777777777788999999999999998888988888888888 4888888888888888888888888888
Q ss_pred HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH--------HHHHH
Q 013821 275 LVWEL-HRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE--------GAEEY 345 (436)
Q Consensus 275 ~~~~~-~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~--------~A~~~ 345 (436)
++... +.+++++++++.++++.+|.+..+|...+ .++...|.++ +++++
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~----------------------wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLH----------------------WLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHH----------------------HHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHhccccccchhhHHHHHHH
Confidence 88877 42478888888888888888888888888 7777777766 88888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhCCCCH
Q 013821 346 FSRAILANPGDGEIMSQYAKLVWELHHD------HDKALCYFERAVQASPADS 392 (436)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~d------~~eA~~~~~~al~~~p~~~ 392 (436)
+.++++.+|.|..+|.+.+.++..+++. ++++++++.+++.++|++.
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~ 242 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNV 242 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 8888888888888888888888777641 4778888888888888764
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.58 E-value=2.5e-14 Score=122.98 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
.+.++..++.+|.+++..++ +++|+.+|+++++++|++..+++++| .++...|++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~----------------------~~~~~~g~~~~ 63 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKE-YSKAIDLYTQALSIAPANPIYLSNRA----------------------AAYSASGQHEK 63 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcCHHHHHHHH----------------------HHHHHccCHHH
Confidence 34467889999999999875 99999999999999999999999999 88999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFL 402 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~ 402 (436)
|+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..++...+...
T Consensus 64 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 64 AAEDAELATVVDPKYSKAWSRLGLARFDMAD-YKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999999988766666543
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-14 Score=116.85 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=114.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821 262 DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 262 ~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
.|....+++.+|.++...++ +++|+.+|+++++.+|.+..++..+| .++...|++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la----------------------~~~~~~~~~~~ 68 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGD-YPQAMKHYTEAIKRNPKDAKLYSNRA----------------------ACYTKLLEFQL 68 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTC-SHHHHHHHHHHHTTCTTCHHHHHHHH----------------------HHHTTTTCHHH
T ss_pred CcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH----------------------HHHHHhccHHH
Confidence 45678899999999998875 99999999999999999999999999 88889999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821 342 AEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
|+.+|+++++.+|.+..+++.+|.++..+|+ +++|+.+|++++..+|.+..++..++.++..+|+
T Consensus 69 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 69 ALKDCEECIQLEPTFIKGYTRKAAALEAMKD-YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 9999999999999999999999999999988764
No 142
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.58 E-value=4.1e-14 Score=128.51 Aligned_cols=192 Identities=9% Similarity=-0.009 Sum_probs=130.3
Q ss_pred CCCChHHHHHhhcCCCCCC--chhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPG--FDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAE 252 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~ 252 (436)
++++|...+...+...+.. ...++..+|.++...|++++|+..|+++++.+|++. .+++.+|.++...+..
T Consensus 19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~---- 94 (225)
T 2yhc_A 19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS---- 94 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh----
Confidence 5557888888888776632 137899999999999999999999999999999886 4889999999875421
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013821 253 DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
....+..++.++...+ ++++|+..|+++++..|++..++..+..+....+...+.. .....+
T Consensus 95 ------------~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~-----~~~a~~ 156 (225)
T 2yhc_A 95 ------------ALQGFFGVDRSDRDPQ-QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE-----YSVAEY 156 (225)
T ss_dssp -------------------------CCH-HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred ------------hhhhhhccchhhcCcH-HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 0111223333333333 2555555566555555555433322111110000000000 000078
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 333 IQSKGDLEGAEEYFSRAILANPGDG---EIMSQYAKLVWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
+...|++++|+..|+++++..|+++ +++..+|.++..+|+ +++|+..++++....|++.
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~-~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM-NAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCCSCCC
T ss_pred HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCch
Confidence 8899999999999999999999986 689999999999999 9999999999999888753
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.58 E-value=2.7e-14 Score=135.09 Aligned_cols=162 Identities=12% Similarity=-0.023 Sum_probs=128.9
Q ss_pred hHHhhhhhCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 013821 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL------LLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWM 270 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 270 (436)
.....+...|++++|+.++++++...+..+. .+..+|.++...+++++|+.+|++++.+.+.. ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4456778889999999999999998876654 33458888888999999999999999975442 34789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALAA---PQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE 343 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~ 343 (436)
.+|.+|...++ +++|+.+|+++++.. |. ...+++++| .+|..+|++++|+
T Consensus 160 ~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg----------------------~~y~~~~~y~~A~ 216 (293)
T 3u3w_A 160 AIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA----------------------KALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH----------------------HHHHHTTCHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH----------------------HHHHHHhHHHHHH
Confidence 99999998875 999999999999632 12 234566777 8888888888888
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 344 EYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 344 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
.++++++++.+.. +.+++++|.++..+|+++++|+.+|++|+.+
T Consensus 217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888888875433 6788888888888885368888888888865
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.58 E-value=3.8e-14 Score=116.88 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=97.1
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-------GESWM 270 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 270 (436)
+.++.++|+++++.|++++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|.+ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999998865 35788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY 307 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l 307 (436)
.+|.++..++ ++++|+++|++++...|+ ++....+
T Consensus 88 ~lg~~~~~~~-~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQN-DLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 8999988887 499999999999999885 4444333
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.57 E-value=2e-13 Score=109.97 Aligned_cols=116 Identities=21% Similarity=0.376 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
..++..+|.++...|++++|+.+|++++...|.+..++..+|.++...++ +++|+.+|+++++..|.+..++..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la--- 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAWYNLG--- 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCccHHHHHHHH---
Confidence 44555555555555555555555555555555555555555555555543 55555555555555555555555555
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
.++...|++++|+.+|+++++.+|.+..++..++.++...
T Consensus 85 -------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 85 -------------------NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 4555555555555555555555555555555555555443
No 146
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.57 E-value=1.5e-15 Score=153.30 Aligned_cols=147 Identities=8% Similarity=0.084 Sum_probs=134.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 013821 244 KKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---------------SNILAAYA 308 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---------------~~~~~~la 308 (436)
..+++++|+..|++++...|.....+..+|.+++..++ |++|+.+|+++++++|.+ ..++.++|
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999875 999999999999999998 68888999
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~ 388 (436)
.++.++|+|++|+.+|+++++++|++..+++++|.++..+|+ +++|+..|+++++++
T Consensus 325 ----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 ----------------------MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVN 381 (457)
T ss_dssp ----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC
T ss_pred ----------------------HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHH
Q 013821 389 PADSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~~eA~~~ 414 (436)
|++..++..++.++..++++++|...
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887743
No 147
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.57 E-value=2e-13 Score=148.76 Aligned_cols=217 Identities=10% Similarity=-0.024 Sum_probs=160.2
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKL 275 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 275 (436)
..+..|..+|..+...|++++|+..|.++ +++..|..+|.++.+.|++++|+++|..+.+..++ +.+...+|.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHH
Confidence 44577888888888888888888888775 67788888888888888888888888888877643 2223347777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHH
Q 013821 276 VWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 276 ~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~ 351 (436)
|.++++ +++ ++.|. ...+...+..+|..+...|++++|...|..+-.- .++.++|++++|++++++|
T Consensus 1177 YAKl~r-lee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1177 LAKTNR-LAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred HHhhcC-HHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 777754 663 44442 2334456667898899999999888888854222 7888889999999999888
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-
Q 013821 352 ANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT- 430 (436)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~- 430 (436)
.+..+|..++.++...|+ |..|..+... +..+| +.+..++..|...|.+++|+.++++++.+++.+.+.-+
T Consensus 1248 ---~n~~aWkev~~acve~~E-f~LA~~cgl~-Iiv~~---deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKE-FRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhH-HHHHHHHHHh-hhcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 556888888888888888 8888887763 44444 45558888899999999999999999999877665443
Q ss_pred hhhhc
Q 013821 431 TANVY 435 (436)
Q Consensus 431 ~a~~y 435 (436)
.+.+|
T Consensus 1320 LaiLy 1324 (1630)
T 1xi4_A 1320 LAILY 1324 (1630)
T ss_pred HHHHH
Confidence 44443
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.57 E-value=4.4e-14 Score=133.55 Aligned_cols=164 Identities=12% Similarity=0.013 Sum_probs=136.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDGE------SWMQYAKLVWELHRDQHRALTYFERAALAAPQD------SN 302 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------~~ 302 (436)
+...+..+...|++++|+..+++++...+..+. .+..+|.++...+ ++++|+.+|++++++.+.. ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 445577889999999999999999998877655 2334777766554 5999999999999976542 33
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHH
Q 013821 303 ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN-------PGDGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~d~~ 375 (436)
++.++| .+|..+|++++|+.+|+++++.. +....+++++|.++..+|+ ++
T Consensus 157 ~~~~lg----------------------~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~ 213 (293)
T 3u3w_A 157 IENAIA----------------------NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YE 213 (293)
T ss_dssp HHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HH
Confidence 577788 88999999999999999999642 2234689999999999999 99
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhC
Q 013821 376 KALCYFERAVQASPAD------SHVLAAYACFLWETEE-DEDDSKSSDQFQQVA 422 (436)
Q Consensus 376 eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~-~~eA~~~~~~al~l~ 422 (436)
+|+.++++++++.+.. +.++..+|.++..+|+ +++|+++|++++.+.
T Consensus 214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999999886543 6899999999999995 699999999999874
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.56 E-value=1e-13 Score=114.66 Aligned_cols=119 Identities=14% Similarity=-0.001 Sum_probs=71.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAA 306 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~ 306 (436)
.+|.++..++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...++ +++|+.+|+++++++|++..+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCchhHHHHHH
Confidence 3455566666666666666666666666666666666666666666666665553 666666666666666666666666
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 013821 307 YACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-----DGEIMSQYAKLVW 368 (436)
Q Consensus 307 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~ 368 (436)
+| .++...|++++|+.+|+++++++|+ +..++..+..+..
T Consensus 83 l~----------------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 83 LG----------------------QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HH----------------------HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 66 5555566666666666666666555 4445554444443
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=4.6e-14 Score=115.37 Aligned_cols=102 Identities=22% Similarity=0.107 Sum_probs=92.2
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.+..+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH
Q 013821 280 HRDQHRALTYFERAALAAPQDSN 302 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~~~ 302 (436)
++ +++|+..|+++++++|++..
T Consensus 99 g~-~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HN-ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HH-HHHHHHHHHHHHC-------
T ss_pred CC-HHHHHHHHHHHHHhCcCCCC
Confidence 86 99999999999999998654
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.55 E-value=3.6e-13 Score=108.43 Aligned_cols=121 Identities=18% Similarity=0.397 Sum_probs=110.1
Q ss_pred CCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821 262 DPGD-GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 262 ~p~~-~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
+|.. ..+++.+|.++...++ +++|+..|+++++..|.+..++..++ .++...|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la----------------------~~~~~~~~~~ 60 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAWYNLG----------------------NAYYKQGDYD 60 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCHH
T ss_pred CccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCcHHHHHHHH----------------------HHHHHhCCHH
Confidence 4555 7789999999888874 99999999999999999999999999 8888999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821 341 GAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
+|+.+|++++...|.+..++..+|.++...|+ +++|+.+|+++++.+|.+..++..++.++...|
T Consensus 61 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999 999999999999999999999999999887654
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.54 E-value=1e-13 Score=114.62 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=103.1
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013821 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~ 339 (436)
..+|.++..++.+|.+++..++ +++|+.+|++++..+|++..++..+| .++...|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~----------------------~~~~~~~~~ 59 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLVAVYYTNRA----------------------LCYLKMQQP 59 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHTTCH
T ss_pred CCccccHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhhCcCcHHHHHHHH----------------------HHHHHhcCH
Confidence 3567788899999999888874 99999999999999999999999999 888888999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHC
Q 013821 340 EGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA-----DSHVLAAYACFLWET 405 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~-----~~~~~~~la~~~~~~ 405 (436)
++|+.+|+++++++|+++.+++.+|.++..+|+ +++|+..|++++.+.|+ +..+...+..+..+.
T Consensus 60 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 60 EQALADCRRALELDGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 99999999999998887 566666666655443
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.54 E-value=5.6e-14 Score=120.53 Aligned_cols=115 Identities=15% Similarity=0.043 Sum_probs=105.7
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDE------------------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+..+...|+.++..|++++|+..|++++.. +|.+..+|.++|.+|..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467889999999999999999999999999 77777999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 013821 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS-NILAAYACFLWE 313 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 313 (436)
+++|.++.+++.+|.++..+++ +++|+..|+++++++|++. .+...+..+...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999985 9999999999999999998 667777755444
No 154
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.53 E-value=1.6e-14 Score=142.17 Aligned_cols=215 Identities=9% Similarity=-0.010 Sum_probs=99.6
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+..|..+|..+.+.|++++|++.|.++ +++..+...+.++...|++++|+.+++.+++..++ +.+...++.+|.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 358999999999999999999999774 46678999999999999999999999999986444 778888999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH----hHHHHcCCHHHHHHHHHHHHHhC
Q 013821 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV----LPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
++++ +.++.++++. | +..+|..+|..+...|.+++|...+...-.- .++.++|+|++|++.|+++
T Consensus 106 Klg~-l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA---- 174 (449)
T 1b89_A 106 KTNR-LAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA---- 174 (449)
T ss_dssp ---C-HHHHTTTTTC-----C-----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH----
T ss_pred HhCC-HHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc----
Confidence 9875 9998888853 4 4459999999999999999999999843211 8999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh-hh
Q 013821 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT-TA 432 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~-~a 432 (436)
.++.+|..+..++...|+ ++.|..+... +..+|+ -...+..+|.+.|++++|+.++++++.+++.+.+.-+ .+
T Consensus 175 -~~~~~Wk~v~~aCv~~~e-f~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~ 248 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKE-FRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 248 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTC-HHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHcCc-HHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 478999999999999999 9999887775 334554 4557888999999999999999999999988766554 44
Q ss_pred hhc
Q 013821 433 NVY 435 (436)
Q Consensus 433 ~~y 435 (436)
.+|
T Consensus 249 il~ 251 (449)
T 1b89_A 249 ILY 251 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=5.6e-13 Score=106.24 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
.++.+|.++...|++++|+..|++++..+|.++.++..+|.++...++ +++|+..++++++.+|.+..++..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 334444444444444444444444444444444444444444433332 44444444444444444444444444
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.52 E-value=4.7e-14 Score=119.84 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=100.7
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC-------HPL-----LLRNYAQLLQKKGDLYRAEDYYNHATMA---- 261 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 261 (436)
+..+.++|+.++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 356789999999999999999999999999998 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 262 ---DPGDGESW----MQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 262 ---~p~~~~~~----~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+|++..+| +++|.++..+++ +++|+.+|+++++++|++..+...+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999 999999999986 99999999999999998766554444
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=3.8e-13 Score=107.27 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=106.8
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
...+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACF 310 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~ 310 (436)
..++ +++|+.+|+++++.+|++..++..++.+
T Consensus 84 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNR-FEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 9875 9999999999999999999999988854
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.52 E-value=1e-13 Score=113.28 Aligned_cols=95 Identities=18% Similarity=0.102 Sum_probs=87.8
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDED 410 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 410 (436)
..+...|++++|+..|+++++.+|+++.+|+.+|.++..+|+ +++|+..|+++++++|++..++..+|.++...|++++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 888899999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCh
Q 013821 411 DSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 411 A~~~~~~al~l~p~~~ 426 (436)
|+..|++++++.|.+.
T Consensus 104 A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 104 ALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHhCcCCC
Confidence 9999999999999865
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.52 E-value=1.4e-13 Score=118.02 Aligned_cols=76 Identities=17% Similarity=0.075 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMA------------------DPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
+..+..+|..++..|+|++|+..|.+++.+ +|.+..++.++|.++..+++ +++|+.+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-LHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 467888999999999999999999999887 33334444444444444442 44444444444
Q ss_pred HHhCCCCHHHHHHHH
Q 013821 294 ALAAPQDSNILAAYA 308 (436)
Q Consensus 294 l~~~p~~~~~~~~la 308 (436)
++++|+++.+++.+|
T Consensus 90 l~~~p~~~~a~~~~g 104 (162)
T 3rkv_A 90 LKREETNEKALFRRA 104 (162)
T ss_dssp HHHSTTCHHHHHHHH
T ss_pred HhcCCcchHHHHHHH
Confidence 444444444444444
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.52 E-value=1.1e-13 Score=122.36 Aligned_cols=93 Identities=9% Similarity=0.048 Sum_probs=71.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCH----HHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILA---NPG----DGEIMSQYAKLVWELHHDHDKALCYFERAVQASP--ADS----HVLAA 397 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p--~~~----~~~~~ 397 (436)
.++...|++++|+.++++++.+ .++ ...++.++|.++..+|+ +++|+.++++++.+.+ .+. .++..
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 7777778888888888888777 332 24568888999999988 9999999999887632 222 34678
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 398 YACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 398 la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
+|.++...|++++|+.++++++++...
T Consensus 153 la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988887533
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=1.8e-14 Score=146.21 Aligned_cols=136 Identities=15% Similarity=0.062 Sum_probs=120.2
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
+.++..+|.++...|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+.+|+++++++|.++.+++.+|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH--HHHcCCHHHHHHHHH--------
Q 013821 278 ELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP--IQSKGDLEGAEEYFS-------- 347 (436)
Q Consensus 278 ~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~g~~~~A~~~~~-------- 347 (436)
.+++ +++|++.|+++++++|++..++..++ .+ +..+|++++|++.++
T Consensus 86 ~~g~-~~eA~~~~~~al~~~p~~~~~~~~l~----------------------~~~~~~~~g~~~~A~~~~~~~~~~~~~ 142 (477)
T 1wao_1 86 ALGK-FRAALRDYETVVKVKPHDKDAKMKYQ----------------------ECNKIVKQKAFERAIAGDEHKRSVVDS 142 (477)
T ss_dssp HHTC-HHHHHHHHHHHHHHSTTCTTHHHHHH----------------------HHHHHHHHHHHCCC------CCSTTTC
T ss_pred HcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHHHHHHHHHHhccccccchhHhh
Confidence 9985 99999999999999999999999988 54 667788999999998
Q ss_pred ---HHHHhCCCC
Q 013821 348 ---RAILANPGD 356 (436)
Q Consensus 348 ---~al~~~p~~ 356 (436)
+++.++|..
T Consensus 143 ~~~~al~~~~~~ 154 (477)
T 1wao_1 143 LDIESMTIEDEY 154 (477)
T ss_dssp CTTSSCCCCTTC
T ss_pred hhhhhccccccc
Confidence 777776643
No 162
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.51 E-value=2.6e-13 Score=128.15 Aligned_cols=187 Identities=13% Similarity=0.042 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 217 AEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP--GDGESWMQYAKLVWELHRDQHRALTYFERAA 294 (436)
Q Consensus 217 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~d~~~A~~~~~~al 294 (436)
|+..+++.++..+.....+..+|.++...|++++|++++.+++..+| .+.+++..++.++..+++ .+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r-~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN-VSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 78889998887666777788999999999999999999999999987 889999999999999986 999999999999
Q ss_pred HhCCC----CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 013821 295 LAAPQ----DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG--DLEGAEEYFSRAILANPG--DGEIMSQYAKL 366 (436)
Q Consensus 295 ~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 366 (436)
+.+|+ +..++..++.. ++....| ++++|...|+++....|+ ....+++ +
T Consensus 164 ~~~~d~~~~~d~~l~~Laea--------------------~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~ 220 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAES--------------------YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---L 220 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHH--------------------HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---H
T ss_pred hcCccccccchHHHHHHHHH--------------------HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---H
Confidence 99993 23333444422 4445455 999999999999888886 3334444 8
Q ss_pred HHHhcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 367 VWELHHDHDKALCYFERAVQA----------SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 367 ~~~~g~d~~eA~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
+.++|+ +++|...++.+++. +|+++.++.+++.+...+|+ +|.+++.++.+..|+++....
T Consensus 221 ~~~~g~-~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 221 HLQQRN-IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHTC-HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHcCC-HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 999999 99999999987776 58899999999999999997 899999999999999876544
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=1.7e-13 Score=121.10 Aligned_cols=157 Identities=14% Similarity=0.038 Sum_probs=127.3
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCC
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~d 282 (436)
+..|++++|++.++......+....++..+|.++...|++++|+.++++++.+ .+....++..+|.++...++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN- 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC-
Confidence 45699999999666554433366799999999999999999999999999994 34457889999999999875
Q ss_pred HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC-
Q 013821 283 QHRALTYFERAALA---APQD----SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP- 354 (436)
Q Consensus 283 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p- 354 (436)
+++|+.++++++++ .+++ ..++.++| .++...|++++|+.++++++.+.+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVA----------------------TVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH----------------------HHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999998 4433 44567777 888889999999999999997642
Q ss_pred -CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 013821 355 -GD----GEIMSQYAKLVWELHHDHDKALCYFERAVQASP 389 (436)
Q Consensus 355 -~~----~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p 389 (436)
.+ ..++.++|.++..+|+ +++|+.++++++++..
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKN-LLEAQQHWLRARDIFA 178 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHH
Confidence 22 3457899999999999 9999999999998754
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.50 E-value=1.2e-14 Score=147.46 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+..+..+|.++...|++++|+++|+++++++|.+..++..+|.++..+++ +++|+.+|+++++++|++..+++++|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~lg--- 81 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYYRRA--- 81 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCHHHHHHHH---
Confidence 45567788899999999999999999999999999999999999999985 99999999999999999999999999
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCCHHHHHHHHH-------
Q 013821 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL--VWELHHDHDKALCYFE------- 382 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~d~~eA~~~~~------- 382 (436)
.+|..+|++++|+++|+++++++|++..++..++.+ +..+|+ +++|+..++
T Consensus 82 -------------------~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~-~~~A~~~~~~~~~~~~ 141 (477)
T 1wao_1 82 -------------------ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSVVD 141 (477)
T ss_dssp -------------------HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH-HCCC------CCSTTT
T ss_pred -------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhccccccchhHh
Confidence 889999999999999999999999999999999998 888899 999999999
Q ss_pred ----HHHHhCCCCH-----------HHHHHHHHHHHHCCChH--HHHHHHHHHHh
Q 013821 383 ----RAVQASPADS-----------HVLAAYACFLWETEEDE--DDSKSSDQFQQ 420 (436)
Q Consensus 383 ----~al~~~p~~~-----------~~~~~la~~~~~~g~~~--eA~~~~~~al~ 420 (436)
+++.+.|+.. ..+..+...+...+... ++...+.++.+
T Consensus 142 ~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~e 196 (477)
T 1wao_1 142 SLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKE 196 (477)
T ss_dssp CCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 7777776532 23334444455545443 33345555544
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.50 E-value=1.4e-13 Score=116.83 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=90.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCC
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPG-------DGE-----IMSQYAKLVWELHHDHDKALCYFERAVQA-------SPAD 391 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~d~~eA~~~~~~al~~-------~p~~ 391 (436)
..++..|+|++|+.+|++||+++|+ +.. +|.++|.++..+|+ +++|+..|.++|++ +|++
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-~~eAl~~~~kAL~l~n~~~e~~pd~ 97 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNRRGELNQDE 97 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhhccccCCCch
Confidence 8888999999999999999999999 544 99999999999999 99999999999999 9999
Q ss_pred HHHH----HHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 392 SHVL----AAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 392 ~~~~----~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
..+| +++|.++..+|++++|+..|++++++.|...+
T Consensus 98 ~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 98 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 9999 99999999999999999999999999886544
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.3e-13 Score=111.38 Aligned_cols=112 Identities=19% Similarity=0.118 Sum_probs=83.0
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCH---PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
.....+..+|..+...|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+.++++++..+|.++.+++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 456677777777777777777777777777777766 67777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
|.++...++ +++|+.+|+++++++|++..++..++
T Consensus 106 a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 106 SQALEKLGR-LDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 777777664 77777777777777777777666665
No 167
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=2.9e-12 Score=134.50 Aligned_cols=214 Identities=11% Similarity=0.037 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAE-DYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
+.....|++++...|.++.+|+.++..+...|+.++|. ..|++|+...|.....|..++.+....+ ++++|...|+++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~-~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT-KIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 45678899999999999999999999999999999997 9999999999999999999999988876 499999999999
Q ss_pred HHhC-----------CC-----------CHHHHHHHHHHHHHccCchHHHHHHHHHHHH-------------hHHHHc-C
Q 013821 294 ALAA-----------PQ-----------DSNILAAYACFLWEMEDDGEDDKAQEEHIQV-------------LPIQSK-G 337 (436)
Q Consensus 294 l~~~-----------p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~-g 337 (436)
+..- |. ...+|..++.+..+.++.+.|..++.++++. .+.... +
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 9752 53 3568999999999999999999999988763 122233 4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHH
Q 013821 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPA---DSHVLAAYACFLWETEEDEDDSKS 414 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~ 414 (436)
+++.|...|+++++..|+++..|..++......|+ .+.|..+|++++...|+ ...+|..+..+..+.|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~-~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE-ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 59999999999999999999999999999999999 99999999999999883 557889999999999999999999
Q ss_pred HHHHHhhCCCChhHHh
Q 013821 415 SDQFQQVAPIRQGAVT 430 (436)
Q Consensus 415 ~~~al~l~p~~~~~~~ 430 (436)
++++.+..|+......
T Consensus 564 ~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 564 EKRFFEKFPEVNKLEE 579 (679)
T ss_dssp HHHHHHHSTTCCHHHH
T ss_pred HHHHHHhCCCCcHHHH
Confidence 9999999998654433
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8e-13 Score=110.26 Aligned_cols=117 Identities=19% Similarity=0.091 Sum_probs=73.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNI 303 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~ 303 (436)
..|.+...++.+|.++...|++++|+.+|+++++.+|++ ..++..+|.++...++ +++|+.+|+++++.+|++..+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED-YDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhCccCHHH
Confidence 355666777777777777777777777777777777665 5566666666555543 666666666666666666666
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
++.+| .++...|++++|+.+|+++++++|++..++..++.+
T Consensus 102 ~~~~a----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRS----------------------QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHH----------------------HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 66555 555555666666666666666666655555555544
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.47 E-value=1.5e-12 Score=106.31 Aligned_cols=112 Identities=11% Similarity=0.076 Sum_probs=103.7
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD---GESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 272 (436)
.++..+|.++...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+.+|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 273 AKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
|.++...++ +++|+..|+++++..|++..+...+..+.
T Consensus 83 a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGK-NTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999875 99999999999999999998877666433
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.47 E-value=2.4e-14 Score=138.62 Aligned_cols=157 Identities=12% Similarity=-0.045 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 229 PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 229 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
+..+..+..+|.+++..|++++|+..|++++.+.|.+.. +...+ ++.++...+. ..+++++|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~-~~~~~~~~l~---------~~~~~nla 237 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYG-KYQDMALAVK---------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCH-HHHHHHHHHH---------THHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcc-cHHHHHHHHH---------HHHHHHHH
Confidence 344566777788888888888888888888877776541 11111 1344433322 13566677
Q ss_pred HHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821 309 CFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~ 388 (436)
.++..+|+|++|+.+|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++
T Consensus 238 ----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 238 ----------------------ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYA 294 (338)
T ss_dssp ----------------------HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC--
T ss_pred ----------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC
Confidence 677777777777777777777777777777777777777777 777777777777777
Q ss_pred CCCHHHHHHHHHH-HHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 389 PADSHVLAAYACF-LWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 389 p~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
|++..++..++.+ ....+..+++...|++++...|...
T Consensus 295 p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 295 PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 7777777777776 3344566667777777777776654
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.47 E-value=6.7e-14 Score=135.51 Aligned_cols=138 Identities=18% Similarity=0.076 Sum_probs=91.6
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----------------LLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+..+..+|+.++..|++++|+.+|++++...|++. .+|+++|.+|..+|++++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999876 4899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH-HHHcCCH
Q 013821 261 ADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP-IQSKGDL 339 (436)
Q Consensus 261 ~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~g~~ 339 (436)
++|.+..+|+.+|.+|..+++ +++|+.+|+++++++|++..++..++ .+ ....+..
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~p~~~~a~~~L~----------------------~l~~~~~~~~ 315 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYAPDDKAIRRELR----------------------ALAEQEKALY 315 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC---------------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHH----------------------HHHHHHHHHH
Confidence 999999999999999999875 99999999999999999999999888 44 3456778
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 013821 340 EGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~ 358 (436)
+++...|.+++...|.++.
T Consensus 316 ~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHhhCCCCCCCC
Confidence 8888999999999887653
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.46 E-value=5e-13 Score=105.64 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 013821 297 APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDK 376 (436)
Q Consensus 297 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~e 376 (436)
+|++..++..+| .++...|++++|+.+|+++++.+|.+..++..+|.++..+|+ +++
T Consensus 2 ~p~~~~~~~~~~----------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~ 58 (112)
T 2kck_A 2 VDQNPEEYYLEG----------------------VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER-YEE 58 (112)
T ss_dssp CCSSTTGGGGHH----------------------HHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHH
T ss_pred CCCcHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-HHH
Confidence 577888888899 888999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCCCh
Q 013821 377 ALCYFERAVQASPA--DSHVLAAYACFLWET-EEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 377 A~~~~~~al~~~p~--~~~~~~~la~~~~~~-g~~~eA~~~~~~al~l~p~~~ 426 (436)
|+.+|+++++..|. +..++..+|.++..+ |++++|++++++++...|...
T Consensus 59 A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 59 AVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999999999 999999999999999 999999999999999988653
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.46 E-value=1.1e-12 Score=106.63 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 013821 231 HPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-------SNI 303 (436)
Q Consensus 231 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-------~~~ 303 (436)
.+..+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...++ +++|+.+|++++...|.+ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 456788899999999999999999999999999999999999999888874 999999999999988776 777
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 013821 304 LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHH 372 (436)
Q Consensus 304 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (436)
+..+| .++...|++++|+.+|+++++..| +...+..++.+...+++
T Consensus 82 ~~~la----------------------~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIG----------------------NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 88888 888889999999999999999998 58888888888766543
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.44 E-value=3.3e-12 Score=104.27 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATMADPGDG---ESWMQYAKLVWELHRDQHRALTYFERAALAAPQD---SNILAAYA 308 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~---~~~~~~la 308 (436)
++.+|.++...|++++|+..|+++++.+|.++ .+++.+|.++...++ +++|+..|+++++.+|++ +.+++.+|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN-FQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 44455555555555555555555555555444 444445544444432 444444444444444444 44444444
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.44 E-value=3.9e-13 Score=113.92 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=90.8
Q ss_pred hhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 209 PNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDL----------YRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
.+.+.+++|+..|+++++++|+++++|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999998875 599999999999999999999999999998
Q ss_pred Hc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 279 LH----------RDQHRALTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 279 ~~----------~d~~~A~~~~~~al~~~p~~~~~~~~la 308 (436)
++ +++++|+++|++|++++|++...+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 75 3599999999999999999977665544
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.44 E-value=1.4e-12 Score=102.94 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=98.5
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPG--DGESWMQYA 273 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la 273 (436)
.....|..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|. +..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 013821 274 KLVWEL-HRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 274 ~~~~~~-~~d~~~A~~~~~~al~~~p~~ 300 (436)
.++... ++ +++|++++++++...|.+
T Consensus 84 ~~~~~~~~~-~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGK-EVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSC-SHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCC-HHHHHHHHHHHhhcccCC
Confidence 999888 85 999999999999999875
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=1.6e-12 Score=105.64 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHH
Q 013821 265 DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEE 344 (436)
Q Consensus 265 ~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~ 344 (436)
.+..++.+|.++...+ ++++|+.+|+++++.+|.+..++..+| .++...|++++|+.
T Consensus 3 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la----------------------~~~~~~~~~~~A~~ 59 (131)
T 1elr_A 3 QALKEKELGNDAYKKK-DFDTALKHYDKAKELDPTNMTYITNQA----------------------AVYFEKGDYNKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH----------------------HHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHH----------------------HHHHHhccHHHHHH
Confidence 4578899999998887 599999999999999999999999999 88889999999999
Q ss_pred HHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821 345 YFSRAILANPGD-------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 345 ~~~~al~~~p~~-------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
+|++++...|.+ ..+++.+|.++...|+ +++|+.+|++++...| +..++..++.+...++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK-YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 999999998877 8999999999999999 9999999999999999 5888888888776544
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.6e-12 Score=129.04 Aligned_cols=201 Identities=11% Similarity=0.007 Sum_probs=164.1
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----------------LLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
|.+....|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34556677788889999999999999999887642 4688999999999999999999999998
Q ss_pred hCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 013821 261 ADPGDG------ESWMQYAKLVWELHRDQHRALTYFERAALAAP------QDSNILAAYACFLWEMEDDGEDDKAQEEHI 328 (436)
Q Consensus 261 ~~p~~~------~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 328 (436)
..+... .+...++.++...+ ++++|+.++++++...+ ....++..+|
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la-------------------- 142 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA-------------------- 142 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH--------------------
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH--------------------
Confidence 765532 24455666655554 59999999999988643 2356777888
Q ss_pred HHhHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CC----HHHH
Q 013821 329 QVLPIQSKGDLEGAEEYFSRAILA------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASP---AD----SHVL 395 (436)
Q Consensus 329 ~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p---~~----~~~~ 395 (436)
.++...|+|++|+.++++++.. .+...+++..++.++..+|+ +++|..++++++.+.+ .. ..++
T Consensus 143 --~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 143 --TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-LAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp --HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred --HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 8888999999999999999876 23446799999999999999 9999999999987643 22 3567
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 396 AAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 396 ~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
..+|.++...+++++|..+|.+++...
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 888999999999999999999998753
No 179
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.42 E-value=9.1e-12 Score=135.96 Aligned_cols=207 Identities=11% Similarity=0.011 Sum_probs=158.7
Q ss_pred CchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHcCCH
Q 013821 196 GFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPC---------------------------HPLLLRNYAQLLQKKGDL 248 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---------------------------~~~~~~~la~~~~~~g~~ 248 (436)
+++..|..+|.++.+.|++++|+++|..+.+..++ +...+..+|..+...|+|
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence 45678999999999999999999999988866532 123355677777777777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH-
Q 013821 249 YRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH- 327 (436)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~- 327 (436)
++|+.+|.++ ..|..+|.++.++++ +++|+++++++ .+..+|...+.++.+.|++..|.......
T Consensus 1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge-~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii 1277 (1630)
T 1xi4_A 1212 DAAKLLYNNV--------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV 1277 (1630)
T ss_pred HHHHHHHHhh--------hHHHHHHHHHHHhCC-HHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 7777777765 366777777777764 77777777777 55677777777777777776666655321
Q ss_pred -----HHH--hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC-----CCHH
Q 013821 328 -----IQV--LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASP-----ADSH 393 (436)
Q Consensus 328 -----~~~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~d~~eA~~~~~~al~~~p-----~~~~ 393 (436)
+.. ..|...|.|++|+.++++++.+++.+...+..+|.++.+ -++ ..+++++|...+.+.| ++..
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek-lmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH-HHHHHHHHHHhcccchHhHHHHHHH
Confidence 111 678899999999999999999999999999888888765 445 7788888888888777 7788
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHH
Q 013821 394 VLAAYACFLWETEEDEDDSKSSDQ 417 (436)
Q Consensus 394 ~~~~la~~~~~~g~~~eA~~~~~~ 417 (436)
.|..+..+|.+.|+++.|+.....
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHh
Confidence 999999999999999999854433
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.42 E-value=1.7e-12 Score=127.17 Aligned_cols=140 Identities=18% Similarity=0.132 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFL 311 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~ 311 (436)
+..+..+|..++..|++++|+..|++++++.+..+ +....++....+|.+..++.++|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~nla--- 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------AAAEDADGAKLQPVALSCVLNIG--- 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------------------HHSCHHHHGGGHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-------------------cccChHHHHHHHHHHHHHHHHHH---
Confidence 45688899999999999999999999987533211 01112333345556666777777
Q ss_pred HHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821 312 WEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~ 391 (436)
.++..+|++++|+.+|+++++++|+++.+++.+|.++..+|+ +++|+..|+++++++|++
T Consensus 281 -------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 281 -------------------ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIAPED 340 (370)
T ss_dssp -------------------HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC
T ss_pred -------------------HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCC
Confidence 666777777777777777777777777777777777777777 777777777777777777
Q ss_pred HHHHHHHHHHHHHCCChHHHHH
Q 013821 392 SHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~eA~~ 413 (436)
..++..++.++..+++++++.+
T Consensus 341 ~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 341 KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766654
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.41 E-value=1.8e-12 Score=126.96 Aligned_cols=122 Identities=11% Similarity=0.047 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013821 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
..+..+|..++..++ +++|+..|++++++.+... +....
T Consensus 224 ~~~~~~g~~~~~~g~-~~~Ai~~y~kAl~~~~~~~----------------------------------------~~~~~ 262 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSR----------------------------------------AAAED 262 (370)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH----------------------------------------HHSCH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCc----------------------------------------cccCh
Confidence 457788989888875 9999999999998643211 11123
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 013821 347 SRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 426 (436)
..+...+|.+..+|.++|.++..+|+ +++|+.+|+++++++|++..+++.+|.+|..+|++++|+..|++++++.|...
T Consensus 263 ~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 263 ADGAKLQPVALSCVLNIGACKLKMSD-WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 44455677788999999999999999 99999999999999999999999999999999999999999999999999876
Q ss_pred hHHh
Q 013821 427 GAVT 430 (436)
Q Consensus 427 ~~~~ 430 (436)
....
T Consensus 342 ~~~~ 345 (370)
T 1ihg_A 342 AIQA 345 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=1.5e-12 Score=110.26 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=82.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 243 QKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHR---------DQHRALTYFERAALAAPQDSNILAAYACFLWE 313 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---------d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 313 (436)
.+.+.+++|+..++++++++|+++++|.++|.++...++ .+++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 356779999999999999999999999999999998875 13599999999999999999999999955544
Q ss_pred ccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 314 MEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEI 359 (436)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (436)
+|...- ......|++++|+.+|++|++++|++...
T Consensus 93 lg~l~P-----------~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTP-----------DETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCc-----------chhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 331000 00111257888888888888888886533
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=6.4e-13 Score=107.47 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=86.6
Q ss_pred hCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821 210 NFDDSAEAEEYYKRMIDE---YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 210 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
..|++++|+.+|+++++. +|+++.++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...++ +++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR-YEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-HHHH
Confidence 358899999999999999 588889999999999999999999999999999999999999999999999985 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHH
Q 013821 287 LTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la 308 (436)
+.+|+++++..|+++.+.....
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999999999988765444
No 184
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.38 E-value=1.2e-13 Score=135.95 Aligned_cols=217 Identities=13% Similarity=0.054 Sum_probs=135.0
Q ss_pred CCCChHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 178 RPVSPPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNH 257 (436)
Q Consensus 178 ~p~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 257 (436)
..+++..|+..+....+ .+.....++.++.+.|++.+++++++. | +..+|..+|..+...|+|++|..+|.+
T Consensus 76 ~~EeAi~yl~~ark~~~--~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 76 NWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp -----------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc--cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34456666666655322 244556677777777888777777752 4 345888888888888888888888887
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHH-------HHH
Q 013821 258 ATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEH-------IQV 330 (436)
Q Consensus 258 al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~ 330 (436)
+ ..|..+|.++.++++ |++|++.|+++ +++.+|.....++...|+++.|....... ...
T Consensus 148 a--------~n~~~LA~~L~~Lg~-yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~l 213 (449)
T 1b89_A 148 V--------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEEL 213 (449)
T ss_dssp T--------TCHHHHHHHHHTTTC-HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHH
T ss_pred h--------hhHHHHHHHHHHhcc-HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHH
Confidence 6 467888888888874 88888888888 57888888888888888888775444311 011
Q ss_pred -hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHH
Q 013821 331 -LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE--LHHDHDKALCYFERAVQASP-----ADSHVLAAYACFL 402 (436)
Q Consensus 331 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~d~~eA~~~~~~al~~~p-----~~~~~~~~la~~~ 402 (436)
.+|.+.|++++|+.++++++.+++.+..++..+|.++.+ .++ ..+.++.|...+.+.| ++...|..+..+|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k-~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999998865 455 6677777777777777 7788999999999
Q ss_pred HHCCChHHHHHHHHH
Q 013821 403 WETEEDEDDSKSSDQ 417 (436)
Q Consensus 403 ~~~g~~~eA~~~~~~ 417 (436)
.+.++++.|+....+
T Consensus 293 ~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 293 DKYEEYDNAIITMMN 307 (449)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HhhchHHHHHHHHHh
Confidence 999999999876544
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.37 E-value=6e-12 Score=105.84 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQYAKLVWELHRDQHRALTYFERAALAAPQD------ 300 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~------ 300 (436)
.++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...++ +++|+.++++++++.+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCcHHH
Confidence 455666666666666666666666666553321 1244455555555442 555555555555443221
Q ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCH
Q 013821 301 SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDH 374 (436)
Q Consensus 301 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~ 374 (436)
..++..+| .++...|++++|+.++++++.+.+. ...++..+|.++..+|+ +
T Consensus 89 ~~~~~~l~----------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~ 145 (164)
T 3ro3_A 89 AQSCYSLG----------------------NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-H 145 (164)
T ss_dssp HHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-H
T ss_pred HHHHHHHH----------------------HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-H
Confidence 22333444 5555555555555555555544211 13445555666666655 6
Q ss_pred HHHHHHHHHHHHhC
Q 013821 375 DKALCYFERAVQAS 388 (436)
Q Consensus 375 ~eA~~~~~~al~~~ 388 (436)
++|+.++++++++.
T Consensus 146 ~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 146 DQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.36 E-value=1.2e-12 Score=105.77 Aligned_cols=97 Identities=12% Similarity=0.251 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 013821 282 DQHRALTYFERAALA---APQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGE 358 (436)
Q Consensus 282 d~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (436)
++++|+.+|++++++ +|++..++..+| .++...|++++|+.+|+++++.+|+++.
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg----------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~ 62 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLG----------------------STFRTLGEYRKAEAVLANGVKQFPNHQA 62 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 588999999999998 588888999999 8888899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 359 IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 359 ~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+++++|.++..+|+ +++|+..|++++...|+++.+......+
T Consensus 63 ~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 63 LRVFYAMVLYNLGR-YEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999999 9999999999999999988765443333
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.35 E-value=6.9e-12 Score=105.42 Aligned_cols=135 Identities=12% Similarity=0.118 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013821 266 GESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS------NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339 (436)
Q Consensus 266 ~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~ 339 (436)
..++..+|.+++..++ +++|+.++++++++.+... .++..+| .++...|++
T Consensus 9 ~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~g~~ 65 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLG----------------------NAYIFLGEF 65 (164)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------HHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH----------------------HHHHHcCCH
Confidence 4578899999998875 9999999999999865422 3556666 888999999
Q ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCC
Q 013821 340 EGAEEYFSRAILANPGD------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPA------DSHVLAAYACFLWETEE 407 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~~g~ 407 (436)
++|+.++++++++.+.. ..++.++|.++..+|+ +++|+.++++++.+.+. ...++..+|.++...|+
T Consensus 66 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 99999999999886543 5689999999999999 99999999999987432 24678999999999999
Q ss_pred hHHHHHHHHHHHhhCCC
Q 013821 408 DEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 408 ~~eA~~~~~~al~l~p~ 424 (436)
+++|+.++++++++...
T Consensus 145 ~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 145 HDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987544
No 188
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=5.1e-11 Score=112.43 Aligned_cols=186 Identities=11% Similarity=-0.007 Sum_probs=149.8
Q ss_pred hHHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 182 PPMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP--CHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
+..++..-+.... .....+..+|.++...|++++|++++.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~-~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQ-NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555665555443 3456667899999999999999999999999987 788999999999999999999999999999
Q ss_pred HhCCC----CHHHHHHH--HHHHHHHc-CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 013821 260 MADPG----DGESWMQY--AKLVWELH-RDQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEHIQV 330 (436)
Q Consensus 260 ~~~p~----~~~~~~~l--a~~~~~~~-~d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 330 (436)
+.+|+ +-.++..+ +.+....+ +++.+|...|+++.+..|+ ....++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl------------------------- 218 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL------------------------- 218 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH-------------------------
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH-------------------------
Confidence 99993 23333444 44455544 2599999999999888886 233333
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILA----------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~ 396 (436)
.++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.+++.++.+.+|+++.+..
T Consensus 219 n~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk---~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 219 NLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL---DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC---TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh---HHHHHHHHHHHhCCCChHHHH
Confidence 3456789999999999988776 58899999999999999987 789999999999999986653
No 189
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=4.5e-10 Score=117.86 Aligned_cols=208 Identities=9% Similarity=-0.028 Sum_probs=181.5
Q ss_pred HHHHHhhcCCCCCCchhhhhhHHhhhhhCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 183 PMYLAMGLGISVPGFDDAGEVVDLIMPNFDDSAEAE-EYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
...|.+++...+ ..+..|+..+......|+.++|. ..|++++...|.....|+.++.+....|++++|...|++++..
T Consensus 329 ~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 329 TYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356888888888 79999999999999999999997 9999999999999999999999999999999999999999975
Q ss_pred -----------CCC-----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccC-c
Q 013821 262 -----------DPG-----------DGESWMQYAKLVWELHRDQHRALTYFERAALA-APQDSNILAAYACFLWEMED-D 317 (436)
Q Consensus 262 -----------~p~-----------~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~ 317 (436)
.|. ...+|..++.+....++ .+.|...|.+|++. .+....+|...+.+....++ .
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~-l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG-LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 253 35689999998888876 99999999999998 55567788888888887765 7
Q ss_pred hHHHHHHHHHHHH------------hHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013821 318 GEDDKAQEEHIQV------------LPIQSKGDLEGAEEYFSRAILANP---GDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 318 ~~A~~~~~~~~~~------------~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~d~~eA~~~~~ 382 (436)
+.|..+++..++. ......|+.+.|..+|++|+...| ....+|..+...-...|. .+.+..+++
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~-~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS-LNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 9999999988877 444567999999999999999988 356788888888889999 999999999
Q ss_pred HHHHhCCCCHH
Q 013821 383 RAVQASPADSH 393 (436)
Q Consensus 383 ~al~~~p~~~~ 393 (436)
++++..|++..
T Consensus 566 R~~~~~P~~~~ 576 (679)
T 4e6h_A 566 RFFEKFPEVNK 576 (679)
T ss_dssp HHHHHSTTCCH
T ss_pred HHHHhCCCCcH
Confidence 99999998753
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.22 E-value=1.2e-10 Score=93.35 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 285 RALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYA 364 (436)
Q Consensus 285 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (436)
+|+..|+++++.+|++..+++.+| .++...|++++|+.+|+++++++|.+..+|+.+|
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 60 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLG----------------------KTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHH----------------------HHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 578889999999999999999999 8888899999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHC
Q 013821 365 KLVWELHHDHDKALCYFERAVQASPA--DSHVLAAYACFLWET 405 (436)
Q Consensus 365 ~~~~~~g~d~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~ 405 (436)
.++..+|+ +++|+..|++++++.|. +......+...+..+
T Consensus 61 ~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 61 KTLQGQGD-RAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence 99999999 99999999999998874 345555555544443
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.20 E-value=1.7e-10 Score=92.45 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 216 EAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 216 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
+|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|.+..+|+.+|.++...++ +++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-RAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999999999875 9999999999999
Q ss_pred hCCC--CHHHHHHHHHHH
Q 013821 296 AAPQ--DSNILAAYACFL 311 (436)
Q Consensus 296 ~~p~--~~~~~~~la~~~ 311 (436)
+.|. +......+...+
T Consensus 82 ~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHH
Confidence 9874 445555555333
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.18 E-value=2.4e-11 Score=96.15 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=81.1
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD------SHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~ 404 (436)
.++...|++++|+.+|+++++++|.++.+++++|.++..+|+ +++|+..|+++++++|++ ..++..+|.++..
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999 999999999999999999 8899999999999
Q ss_pred CCChHHHHHHHHH
Q 013821 405 TEEDEDDSKSSDQ 417 (436)
Q Consensus 405 ~g~~~eA~~~~~~ 417 (436)
+|++++|+..+++
T Consensus 91 ~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 91 VGSVQIPVVEVDE 103 (111)
T ss_dssp HHCCCCCSSSSSS
T ss_pred HHhHhhhHhHHHH
Confidence 9999888766553
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.3e-11 Score=96.27 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=68.7
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD------GESWMQ 271 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 271 (436)
...|..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 35677777777778888888888888888888888888888888888888888888888888887777 777777
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 013821 272 YAKLVWELHRDQHRALTYF 290 (436)
Q Consensus 272 la~~~~~~~~d~~~A~~~~ 290 (436)
+|.++...+. ++.|+..+
T Consensus 84 ~~~~~~~~~~-~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGS-VQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHC-CCCCSSSS
T ss_pred HHHHHHHHHh-HhhhHhHH
Confidence 7777766653 55554443
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.16 E-value=5.1e-10 Score=110.77 Aligned_cols=167 Identities=11% Similarity=0.017 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGD-----------------GESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
......|..+...|+|++|++.|.++++..|.. ..++..+|.+|...++ +++|++++++++.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-KDKLREFIPHSTE 83 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 456677888999999999999999999998865 2468899999999985 9999999999998
Q ss_pred hCCCCHHH------HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHH
Q 013821 296 AAPQDSNI------LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP------GDGEIMSQY 363 (436)
Q Consensus 296 ~~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l 363 (436)
..+..... ...++ .++...|++++|+.++++++...+ ....++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIE----------------------KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHH----------------------HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHH----------------------HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 86654322 23344 666778999999999999987632 336789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 013821 364 AKLVWELHHDHDKALCYFERAVQAS------PADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAP 423 (436)
Q Consensus 364 a~~~~~~g~d~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 423 (436)
|.++...|+ |.+|+.++++++... +....++..++.++..+|++++|..+|++++.+.+
T Consensus 142 a~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 142 ATLHYQKKQ-YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccC-hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 999999999 999999999998762 33457899999999999999999999999998754
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.16 E-value=3.4e-10 Score=86.02 Aligned_cols=79 Identities=24% Similarity=0.269 Sum_probs=42.1
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVW 277 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 277 (436)
..|..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++++|.+..++..+|.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555555555555555555554443
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.14 E-value=4.8e-10 Score=85.14 Aligned_cols=75 Identities=17% Similarity=0.331 Sum_probs=71.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
.++...|++++|+.+|+++++.+|.+..++..+|.++...|+ +++|+.+|+++++++|.+..++..+|.++..+|
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999999999999 999999999999999999999999999987764
No 197
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.08 E-value=2.2e-09 Score=99.08 Aligned_cols=189 Identities=15% Similarity=0.054 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHcC--------------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013821 215 AEAEEYYKRMIDEYPCHPLLLRNYAQLL-------QKKG--------------DLYRAEDYYNHATMADPGDGESWMQYA 273 (436)
Q Consensus 215 ~~A~~~~~~al~~~P~~~~~~~~la~~~-------~~~g--------------~~~~A~~~~~~al~~~p~~~~~~~~la 273 (436)
.-.+.+++-.+..+|++...+...|..| .+.. ++..|...|.++... -..+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence 3467788888999999986655444443 3321 244556666655431 1111
Q ss_pred HHHHHHcCCHHHHHHH-----HHHH-HHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821 274 KLVWELHRDQHRALTY-----FERA-ALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~-----~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
.+ ....+ +.+++.. +.++ -+.+|+++++++..|.+....-.... .-+...+...+|...++
T Consensus 121 L~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~-----------gg~~Al~~l~~A~a~le 187 (301)
T 3u64_A 121 LE-TAYPG-FTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTP-----------LGSALPDTVHAAVMMLE 187 (301)
T ss_dssp HH-HHSTT-HHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSC-----------TTSCCHHHHHHHHHHHH
T ss_pred HH-HhCcc-HHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCC-----------CChHHHHhHHHHHHHHH
Confidence 11 11112 4433332 2333 34578899988888865533100000 00011234578999999
Q ss_pred HHHHhCCC--CHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHC-CChHHHHHHHHHH
Q 013821 348 RAILANPG--DGEIMSQYAKLVWEL-----HHDHDKALCYFERAVQASPAD-SHVLAAYACFLWET-EEDEDDSKSSDQF 418 (436)
Q Consensus 348 ~al~~~p~--~~~~~~~la~~~~~~-----g~d~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~~~eA~~~~~~a 418 (436)
+|++++|+ +..+|..+|.+|... |+ .++|..+|++|++++|+. ..++..+|..+... |++++|..+++++
T Consensus 188 rAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd-~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 188 RACDLWPSYQEGAVWNVLTKFYAAAPESFGGG-MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC-HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHhCCCcccCHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999 677999999999985 67 999999999999999975 99999999999884 9999999999999
Q ss_pred HhhCCCC
Q 013821 419 QQVAPIR 425 (436)
Q Consensus 419 l~l~p~~ 425 (436)
++.+|..
T Consensus 267 L~a~p~~ 273 (301)
T 3u64_A 267 LAIDPES 273 (301)
T ss_dssp HHCCGGG
T ss_pred HcCCCCC
Confidence 9998874
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.06 E-value=3.1e-10 Score=88.11 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=80.7
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPL-LLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL 279 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 279 (436)
.+..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+.+|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 356788999999999999999999999999999 99999999999999999999999999999999887744
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 013821 280 HRDQHRALTYFERAALAAPQD 300 (436)
Q Consensus 280 ~~d~~~A~~~~~~al~~~p~~ 300 (436)
+. +.+++..|++++..+|++
T Consensus 75 ~~-~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KM-VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HH-HHHHHHHHCCTTHHHHCC
T ss_pred HH-HHHHHHHHHHHhccCccc
Confidence 22 788899998888887765
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.03 E-value=1.4e-09 Score=85.04 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=58.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH
Q 013821 227 EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DSNIL 304 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~~~~ 304 (436)
.+|+++.+++.+|.++...|++++|+.+|+++++++|.++.+|+.+|.++...++ +++|+..|++++++.|. +....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCchhHH
Confidence 3577777888888888888888888888888888888887788888877777764 88888888888777653 34444
Q ss_pred HHHHHHH
Q 013821 305 AAYACFL 311 (436)
Q Consensus 305 ~~la~~~ 311 (436)
..+..++
T Consensus 81 ~~l~~~l 87 (100)
T 3ma5_A 81 SELQDAK 87 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=6.7e-09 Score=86.50 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHH
Q 013821 213 DSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWEL---HRDQHRALTY 289 (436)
Q Consensus 213 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~d~~~A~~~ 289 (436)
++++|+.+|+++.+....... +|.+|...+.+++|+.+|+++.+. .++.+++.+|.+|..- .+|+++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 445555555555554422222 555555545555555555555443 3444455555444430 1234444444
Q ss_pred HHHHHHhCCCCHHHHHHHH
Q 013821 290 FERAALAAPQDSNILAAYA 308 (436)
Q Consensus 290 ~~~al~~~p~~~~~~~~la 308 (436)
|+++.+. .++.+++++|
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg 100 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILG 100 (138)
T ss_dssp HHHHHHT--TCHHHHHHHH
T ss_pred HHHHHcC--CCHHHHHHHH
Confidence 4444433 3344444444
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.02 E-value=6.8e-09 Score=86.48 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821 246 GDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
+++++|+.+|+++.+....... +|.+|....+ +++|+++|+++.+. .++.+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~-~~~A~~~~~~Aa~~--g~~~a~~~Lg----------------- 64 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQIN-KQKLFQYLSKACEL--NSGNGCRFLG----------------- 64 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSC-HHHHHHHHHHHHHT--TCHHHHHHHH-----------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCC-HHHHHHHHHHHHcC--CCHHHHHHHH-----------------
Confidence 4678899999999888754444 8877766554 88899999999887 7888999999
Q ss_pred HHHHHhHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 326 EHIQVLPIQS----KGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWE----LHHDHDKALCYFERAVQASPADSHVLAA 397 (436)
Q Consensus 326 ~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~d~~eA~~~~~~al~~~p~~~~~~~~ 397 (436)
.+|.. .+++++|+.+|+++.+. .++.++++||.+|.. .++ +++|+.+|+++.+.. ++.+...
T Consensus 65 -----~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~g--~~~A~~~ 134 (138)
T 1klx_A 65 -----DFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN-EKQAVKTFEKACRLG--SEDACGI 134 (138)
T ss_dssp -----HHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHH
T ss_pred -----HHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHHCC--CHHHHHH
Confidence 67776 78999999999999876 678899999999888 666 999999999998874 4556555
Q ss_pred HH
Q 013821 398 YA 399 (436)
Q Consensus 398 la 399 (436)
|+
T Consensus 135 l~ 136 (138)
T 1klx_A 135 LN 136 (138)
T ss_dssp C-
T ss_pred Hh
Confidence 54
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.02 E-value=1.9e-09 Score=84.28 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=67.3
Q ss_pred hCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 013821 296 AAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 296 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~ 375 (436)
.+|+++.+++.+| .++...|++++|+.+|+++++++|+++.+|+.+|.++..+|+ ++
T Consensus 2 ~~p~~~~~~~~lg----------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~ 58 (100)
T 3ma5_A 2 EDPEDPFTRYALA----------------------QEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TD 58 (100)
T ss_dssp ---CCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HH
T ss_pred CCccCHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HH
Confidence 3688888888888 888888888889999999998888888888889988888888 88
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCC
Q 013821 376 KALCYFERAVQASPA--DSHVLAAYACFLWETE 406 (436)
Q Consensus 376 eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g 406 (436)
+|+..|++++++.|. +......+..++...+
T Consensus 59 ~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 59 DAIDTYAQGIEVAREEGTQKDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCchhHHHHHHHHHHHcc
Confidence 999999888887653 3444455555544433
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.98 E-value=1.1e-09 Score=85.04 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=78.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGE-IMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDE 409 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 409 (436)
.++...|++++|+..|+++++.+|++.. +++.+|.++..+|+ +++|+.+|+++++++|++..++.. +.+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~--------~~~~ 78 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQAR--------KMVM 78 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHHHH--------HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHH--------HHHH
Confidence 7788999999999999999999999999 99999999999999 999999999999999999887744 5567
Q ss_pred HHHHHHHHHHhhCCCCh
Q 013821 410 DDSKSSDQFQQVAPIRQ 426 (436)
Q Consensus 410 eA~~~~~~al~l~p~~~ 426 (436)
+++..|+++....|...
T Consensus 79 ~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 79 DILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHhccCcccc
Confidence 88888888887776554
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.95 E-value=4.7e-08 Score=93.88 Aligned_cols=146 Identities=16% Similarity=0.059 Sum_probs=97.4
Q ss_pred HHHHHhCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH----HHHHH----
Q 013821 222 KRMIDEYPCHPLLL--RNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ----HRALT---- 288 (436)
Q Consensus 222 ~~al~~~P~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~----~~A~~---- 288 (436)
+++....|.+..+| +..|..+...++ +.+|+.+|++|++++|+++.++..++.++..... + .....
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~-~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS-QHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-cCCCchhhHHHHHH
Confidence 34555567665443 455566655444 4788888999999999888888887777653221 1 01111
Q ss_pred HHH--HHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 289 YFE--RAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKL 366 (436)
Q Consensus 289 ~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (436)
.++ .++..+|.++.++..++ ..+...|++++|+..+++|+.++|. ..+|..+|.+
T Consensus 263 a~~a~~a~~~~~~~a~~~~ala----------------------l~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~ 319 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKA----------------------VSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKV 319 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHH----------------------HHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHH----------------------HHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 111 12244577777777777 5556668888888888888888764 6677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCH
Q 013821 367 VWELHHDHDKALCYFERAVQASPADS 392 (436)
Q Consensus 367 ~~~~g~d~~eA~~~~~~al~~~p~~~ 392 (436)
+...|+ +++|++.|++|+.++|...
T Consensus 320 ~~~~G~-~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 320 YEMKGM-NREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHSCSHH
T ss_pred HHHCCC-HHHHHHHHHHHHhcCCCcC
Confidence 888888 8888888888888888754
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.94 E-value=3.5e-09 Score=107.01 Aligned_cols=129 Identities=10% Similarity=0.062 Sum_probs=105.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWMQYAKLVWELHRDQHRALTYFERAALA-----APQDSN 302 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~ 302 (436)
...+..+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+ |++|+.++++++++ .|+++.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA-YEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 34555677899999999999999986 3444 5678899999999875 99999999999976 355554
Q ss_pred ---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhc
Q 013821 303 ---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-----NPGDG---EIMSQYAKLVWELH 371 (436)
Q Consensus 303 ---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g 371 (436)
.+.+|| .+|..+|++++|+.+|++|+++ .|+++ ++..+++.++..++
T Consensus 392 ~a~~l~nLa----------------------~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 392 LGMAVMRAG----------------------LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 456777 8899999999999999999987 45554 56678999999999
Q ss_pred CCHHHHHHHHHHHHHhC
Q 013821 372 HDHDKALCYFERAVQAS 388 (436)
Q Consensus 372 ~d~~eA~~~~~~al~~~ 388 (436)
. +++|...|.++.+..
T Consensus 450 ~-~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 450 M-FRQNEFMYHKMREAA 465 (490)
T ss_dssp H-HHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 9 999999999987654
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.91 E-value=5.2e-09 Score=105.79 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=102.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHH
Q 013821 275 LVWELHRDQHRALTYFERAALAA-----PQDSN---ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYF 346 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~-----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~ 346 (436)
.+..+| +|++|+..|++++++. |+++. .+.++| .+|..+|+|++|+.++
T Consensus 318 ~~~~qg-~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa----------------------~~y~~~g~~~eA~~~~ 374 (490)
T 3n71_A 318 KARSEG-LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIAS----------------------EVLSYLQAYEEASHYA 374 (490)
T ss_dssp HHHTTT-CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----------------------HHHHHhcCHHHHHHHH
Confidence 344455 5999999999999873 55554 456677 8899999999999999
Q ss_pred HHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCChHH
Q 013821 347 SRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HVLAAYACFLWETEEDED 410 (436)
Q Consensus 347 ~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~e 410 (436)
+++|++ .|++ +..+++||.+|..+|+ +++|+.+|++|+++ .|+++ ....+++.++..++.+++
T Consensus 375 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 375 RRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 3444 5678999999999999 99999999999975 56666 556789999999999999
Q ss_pred HHHHHHHHHhh
Q 013821 411 DSKSSDQFQQV 421 (436)
Q Consensus 411 A~~~~~~al~l 421 (436)
|...|.++.+.
T Consensus 454 ae~~~~~~~~~ 464 (490)
T 3n71_A 454 NEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 207
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=2.2e-07 Score=94.27 Aligned_cols=192 Identities=10% Similarity=0.054 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
.+.....|++++...|..+.+|+.++..+...|+.++|...|++|+.. |.+...|..++... . .++. ++++
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e----~~~~---~~~l 265 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-D----EEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-T----CTHH---HHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-c----hhHH---HHHH
Confidence 345778999999999999999999999999999999999999999999 99887777655431 1 1111 2222
Q ss_pred HHhC-------------CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHH------------hHHHH-cCCHHHHHHHHH
Q 013821 294 ALAA-------------PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQV------------LPIQS-KGDLEGAEEYFS 347 (436)
Q Consensus 294 l~~~-------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~~~~-~g~~~~A~~~~~ 347 (436)
.+.. +....+|..++.++...+..+.|..++.++ +. .+... .++.+.|...|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 2110 112356778888777777788888887766 21 22222 346899999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 348 RAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
.+++..|+.+..|..++......|+ .+.|...|+++ +.....|..+..+....|+.+.+.+.+++++.
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~-~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGD-EENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999988888888888888888 89999999987 44678888888888888999999888888875
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.88 E-value=7.6e-08 Score=92.44 Aligned_cols=156 Identities=9% Similarity=-0.070 Sum_probs=109.9
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhH
Q 013821 257 HATMADPGDGESW--MQYAKLVWELH--RDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLP 332 (436)
Q Consensus 257 ~al~~~p~~~~~~--~~la~~~~~~~--~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 332 (436)
++...-|.+..+| +..|..+.... .++.+|+.+|+++++++|++..++..++.++........ ..
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~-----------~~ 253 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP-----------LD 253 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC-----------CC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCC-----------Cc
Confidence 3444456654443 33444444331 236899999999999999999999988866642110000 00
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 013821 333 IQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDS 412 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 412 (436)
-........|... ..++..+|.++.++..++.++...|+ +++|+..+++|+.++|. ..++..+|+++...|++++|+
T Consensus 254 ~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd-~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~ 330 (372)
T 3ly7_A 254 EKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGK-TDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAA 330 (372)
T ss_dssp HHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 0000001112221 12335679999999999999998999 99999999999999975 778899999999999999999
Q ss_pred HHHHHHHhhCCCCh
Q 013821 413 KSSDQFQQVAPIRQ 426 (436)
Q Consensus 413 ~~~~~al~l~p~~~ 426 (436)
+.|.+|+.++|...
T Consensus 331 e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 331 DAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHSCSHH
T ss_pred HHHHHHHhcCCCcC
Confidence 99999999999764
No 209
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=1.1e-06 Score=89.11 Aligned_cols=201 Identities=12% Similarity=0.057 Sum_probs=146.6
Q ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 013821 212 DDSAEAEEYYKRMIDEYPC-HPLLLRNYAQLLQKK--GD-----LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQ 283 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~ 283 (436)
..+..|...|+.+....+. ....|..+...-... +- .+.....|++++...|..+.+|..++..+...+ +.
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~-~~ 229 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG-QK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CH
Confidence 3455566666666654333 445666555543321 11 456788999999999999999999999887765 59
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-chHH--------------------HHHHHHHHHHhHHHHcCCHHHH
Q 013821 284 HRALTYFERAALAAPQDSNILAAYACFLWEMED-DGED--------------------DKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 284 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A--------------------~~~~~~~~~~~~~~~~g~~~~A 342 (436)
++|...|++++.. |.+...|..++... +.+. ++.. ..++..++ ..+.+.+..+.|
T Consensus 230 ~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~--~~~~r~~~~~~A 305 (493)
T 2uy1_A 230 EKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL--NYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHHHHHHHHHTC----------CHHHHHHHHHHHH--HHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH--HHHHHcCCHHHH
Confidence 9999999999999 99988887766541 0000 0000 01111111 344457789999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821 343 EEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 418 (436)
...|.+| ...+....+|...|.+.+..++|.+.|...|+.+++..|+.+..|..++......|+.+.|...|+++
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999 44444667888888888877755999999999999999999999999999999999999999998886
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.67 E-value=2.8e-07 Score=85.09 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=92.6
Q ss_pred HhCCCCHHHHHHHHHHHHHH----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHH
Q 013821 260 MADPGDGESWMQYAKLVWEL----HR------DQHRALTYFERAALAAPQ--DSNILAAYACFLWEMEDDGEDDKAQEEH 327 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~----~~------d~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 327 (436)
..+|+++++++..|.+.... .+ ...+|...++++++++|+ +..+|..+|
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG------------------- 206 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLT------------------- 206 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH-------------------
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHH-------------------
Confidence 45788998888888776442 12 247999999999999999 677999999
Q ss_pred HHHhHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCC
Q 013821 328 IQVLPIQSK-----GDLEGAEEYFSRAILANPGD-GEIMSQYAKLVWEL-HHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 328 ~~~~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~d~~eA~~~~~~al~~~p~ 390 (436)
.+|... |+.++|.++|++|++++|+. ..+++.+|..+... |+ +++|..++++++...|.
T Consensus 207 ---~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 207 ---KFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-RAGFDEALDRALAIDPE 272 (301)
T ss_dssp ---HHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-HHHHHHHHHHHHHCCGG
T ss_pred ---HHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCCC
Confidence 777774 99999999999999999975 99999999999885 77 99999999999998876
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=3.9e-07 Score=76.22 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhC-C-CCH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILAN-P-GDG 357 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~ 357 (436)
...+.+.|.+.++.++.+.++.+++| +++.+.+ ++++++..++.+++.+ | .+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya----------------------~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~r 71 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYA----------------------WCLVRSKYNDDIRKGIVLLEELLPKGSKEEQR 71 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHH----------------------HHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCCccchH
Confidence 56777888888888889999999999 7777777 7779999999999998 7 568
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.++++|..++++|+ |++|+++++++++++|++..+....-.+
T Consensus 72 d~lY~LAv~~~kl~~-Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKE-YEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 899999999999999 9999999999999999988776554433
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.61 E-value=2.9e-07 Score=70.90 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 013821 353 NPGDGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPI 424 (436)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 424 (436)
+|++++++..+|.+++..++ ..++|..+++++++++|+++.++..+|..+++.|++++|+.+++++++..|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68999999999999986654 2589999999999999999999999999999999999999999999999887
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.58 E-value=3e-07 Score=70.88 Aligned_cols=71 Identities=11% Similarity=-0.048 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 228 YPCHPLLLRNYAQLLQKKGD---LYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 228 ~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
+|+++.++..+|.+++..++ .++|..+++++++++|+++.+++.+|.+++..++ |++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~-y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR-FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Confidence 46677777777777765554 5777777777777777777777777777777653 77777777777777776
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=8.6e-07 Score=74.13 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKG---DLYRAEDYYNHATMAD-P-GDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~d~~~A 286 (436)
+....+.+.|.+.++.++.+.++.+++|.++.+.+ +.++++..++..++.+ | .+.+.++.+|..+++.+ +|++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~-~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc-CHHHH
Confidence 45677888999999988999999999999999988 6779999999999998 7 57899999999998887 59999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHH
Q 013821 287 LTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la 308 (436)
+++++++++.+|++..+....-
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999988876554
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.53 E-value=2e-07 Score=92.61 Aligned_cols=95 Identities=8% Similarity=-0.013 Sum_probs=81.5
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 013821 335 SKGDLEGAEEYFSRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HVLAAY 398 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-----~p~~~---~~~~~l 398 (436)
..|+|++|+..|++++++ .|++ ..++.++|.+|..+|+ |++|+.++++++++ .|+++ ..+.+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 568999999999999987 4555 4678999999999999 99999999999976 35554 678999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhC-----CCChhHHh
Q 013821 399 ACFLWETEEDEDDSKSSDQFQQVA-----PIRQGAVT 430 (436)
Q Consensus 399 a~~~~~~g~~~eA~~~~~~al~l~-----p~~~~~~~ 430 (436)
|.+|..+|++++|+.+|++++++. |+++....
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999999863 77766554
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.48 E-value=1.7e-06 Score=67.95 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=63.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILAN-------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
..++..|+|..|+.+|++|++.. +....++..+|.+++++|+ +++|+.++++++.+.|++..+..+++.+
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 88999999999999999999873 3457899999999999999 9999999999999999999998888743
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.48 E-value=1.2e-06 Score=68.76 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=50.3
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEY-------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQY 272 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (436)
....+|..++..|+|..|+.+|+++++.. +....++..+|.++.++|++++|+.+++++++++|++..+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 45567777777777777777777777642 23456677777777777777777777777777777776666655
Q ss_pred H
Q 013821 273 A 273 (436)
Q Consensus 273 a 273 (436)
+
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 5
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.46 E-value=1.8e-06 Score=85.82 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=80.7
Q ss_pred hhhhCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDE-----YPCHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWM 270 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~-----~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~ 270 (436)
.....|+|++|+.+|++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .|++ +..++
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 344578999999999999985 45555 67889999999999999999999999976 3444 56788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALA-----APQDSNILA 305 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~~~~ 305 (436)
++|.+|..+|+ +++|+.+|++|+++ .|+++.+..
T Consensus 387 nLa~~~~~qg~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 387 KLGRLYMGLEN-KAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHhccC-HHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999986 99999999999976 477766543
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.38 E-value=6.2e-07 Score=89.17 Aligned_cols=99 Identities=8% Similarity=-0.041 Sum_probs=83.6
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILA-----NPGD---GEIMSQYAKLVWELHHDHDKALCYFERAVQA-----SPADS---HV 394 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-----~p~~~---~~ 394 (436)
.-+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+ |++|+.++++++.+ .|+++ ..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3455789999999999999976 3444 5678999999999999 99999999999975 35555 67
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhh-----CCCChhHHh
Q 013821 395 LAAYACFLWETEEDEDDSKSSDQFQQV-----APIRQGAVT 430 (436)
Q Consensus 395 ~~~la~~~~~~g~~~eA~~~~~~al~l-----~p~~~~~~~ 430 (436)
+.+||.+|..+|++++|+.+|++++++ -|+++....
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 899999999999999999999999986 377766555
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.34 E-value=2e-06 Score=85.47 Aligned_cols=109 Identities=8% Similarity=-0.090 Sum_probs=84.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---
Q 013821 239 AQLLQKKGDLYRAEDYYNHATMA-----DPGD---GESWMQYAKLVWELHRDQHRALTYFERAALA-----APQDSN--- 302 (436)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~d~~~A~~~~~~al~~-----~p~~~~--- 302 (436)
..-+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+ |++|+.++++++++ .|+++.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 44456789999999999999975 3444 5678899999999875 99999999999976 355554
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHh
Q 013821 303 ILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA-----NPGDGE---IMSQYAKLVWEL 370 (436)
Q Consensus 303 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~ 370 (436)
.++++| .+|..+|++++|+.+|++|+++ .|+++. ++.+|+.+...+
T Consensus 373 ~l~nLa----------------------~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 373 QVMKVG----------------------KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------------HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 456777 8888999999999999999987 466654 445566665544
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.27 E-value=0.00012 Score=74.18 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=122.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC-CCHHHH
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQYAKLVWELH--------RDQHRALTYFERAALAAP-QDSNIL 304 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~--------~d~~~A~~~~~~al~~~p-~~~~~~ 304 (436)
+..+-..+.+.|++++|+++|+++.+..- -+...|..+-.++...+ ++.++|.+.|++.....- -+...+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44445666677777777777777776532 25555555554443321 126889999988877642 367777
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821 305 AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN-PGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 305 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~d~~eA~~~~~~ 383 (436)
..+. ..|.+.|++++|.+.|++..+.. .-+..+|..+-..+.+.|+ .++|.++|++
T Consensus 109 n~lI----------------------~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~-~~~A~~l~~~ 165 (501)
T 4g26_A 109 TNGA----------------------RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD-ADKAYEVDAH 165 (501)
T ss_dssp HHHH----------------------HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHH----------------------HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC-HHHHHHHHHH
Confidence 7777 77888899999999999887753 2247888889999999999 9999999999
Q ss_pred HHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 384 AVQAS--PADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 384 al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
..+.. | +...|..+...+.+.|+.++|.+++++..+.
T Consensus 166 M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 166 MVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 88753 4 4778899999999999999999999988765
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.27 E-value=0.0002 Score=72.43 Aligned_cols=158 Identities=12% Similarity=0.069 Sum_probs=127.3
Q ss_pred hhhhhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 013821 206 LIMPNFDDSAEAEEYYKRMIDEY-PCHPLLLRNYAQLLQKKG---------DLYRAEDYYNHATMADP-GDGESWMQYAK 274 (436)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p-~~~~~~~~la~ 274 (436)
..+.+.|+.++|+++|+++.+.. .-+...|..+-.++...+ ..++|.+.|++.....- -+..+|..+..
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45678899999999999999864 226677777777766544 37899999999887643 37788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhC
Q 013821 275 LVWELHRDQHRALTYFERAALAA-PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILAN 353 (436)
Q Consensus 275 ~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 353 (436)
.|.+.++ +++|.+.|++..+.. .-+...+..+. ..|.+.|++++|.+.|++..+..
T Consensus 114 ~~~~~g~-~~~A~~l~~~M~~~g~~Pd~~tyn~lI----------------------~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 114 LAVAKDD-PEMAFDMVKQMKAFGIQPRLRSYGPAL----------------------FGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhcCC-HHHHHHHHHHHHHcCCCCccceehHHH----------------------HHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999875 999999999998764 23677777777 77888999999999999988763
Q ss_pred C-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 354 P-GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 354 p-~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
- -+...|..+..++.+.|+ .++|.+++++.-+.
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~-~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKN-ADKVYKTLQRLRDL 204 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHh
Confidence 2 247888999999999999 99999999998764
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.11 E-value=7.4e-05 Score=61.54 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=67.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013821 227 EYPCHPLLLRNYAQLLQKKGDL------YRAEDYYNHATMADPGD--------GESWMQYAKLVWELHRDQHRALTYFER 292 (436)
Q Consensus 227 ~~P~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~d~~~A~~~~~~ 292 (436)
..|.+++.|..+.......|+. ++-++.|++|+..-|-. ...|..+|.. ... +|.++|.+.|+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei-~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI-QEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH-HCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh-cCHHHHHHHHHH
Confidence 4677888888888888777887 77778888887766542 3445555533 333 346666666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 293 AALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDG 357 (436)
Q Consensus 293 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (436)
++.+....+.+|..+| ....++|+..+|.+.+.+|+.+.|...
T Consensus 86 a~~~hKkFAKiwi~~A----------------------qFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 86 ARANCKKFAFVHISFA----------------------QFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHCTTBHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHhHHHHHHHHHHH----------------------HHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 6666555666666666 445556666666666666666666543
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.05 E-value=7.5e-05 Score=61.50 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=89.8
Q ss_pred HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH------HHHHHHHHHHHHhCCC--------CHHHH
Q 013821 295 LAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL------EGAEEYFSRAILANPG--------DGEIM 360 (436)
Q Consensus 295 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~ 360 (436)
-+.|++++.|..+. ....+.|+. ++-++.|++|+..-|- ....|
T Consensus 7 ~~~p~~yd~W~~yl----------------------~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LW 64 (161)
T 4h7y_A 7 MMMANNPEDWLSLL----------------------LKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQ 64 (161)
T ss_dssp ---CCSHHHHHHHH----------------------HHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHH
T ss_pred eeCCCCHHHHHHHH----------------------HHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHH
Confidence 45799999999999 555555666 7778899999888664 24566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 361 SQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 361 ~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
..+|.. ...++ .++|...|+.++.+....+.+|...|.+..++|+...|.+.+.+++.+.|...+-..
T Consensus 65 IrYA~~-~ei~D-~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 65 VRFAEL-KAIQE-PDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHHHH-HHHHC-GGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHHHHH-HHhcC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 677754 45566 999999999999998888999999999999999999999999999999887666444
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.94 E-value=0.0001 Score=59.33 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH---HHHHHHHHHHhC-C-CCH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG---AEEYFSRAILAN-P-GDG 357 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~ 357 (436)
...+...|.+.+..++....+.+++| +++.+..+... ++..++..++.+ | ..-
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yA----------------------w~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~R 74 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYA----------------------WCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 74 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHH----------------------HHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCCcchHH
Confidence 56677777778787888888888888 66666555544 888888887776 4 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+.++.+|..++++|+ |++|+.+++..|+..|++..+......+
T Consensus 75 d~lY~LAvg~yklg~-Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKE-YEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 788889999999988 9999999999999999887766554433
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.81 E-value=0.00022 Score=57.32 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 013821 212 DDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYR---AEDYYNHATMAD-P-GDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 212 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~d~~~A 286 (436)
.....+...|.+.+..++...++.+++|.++....+... ++..++..+..+ | ...+.++.+|..+++.+. |++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~-Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-YEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh-HHHH
Confidence 445677888888888888899999999999999887766 999999988877 5 467889999999999974 9999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHH
Q 013821 287 LTYFERAALAAPQDSNILAAYA 308 (436)
Q Consensus 287 ~~~~~~al~~~p~~~~~~~~la 308 (436)
+.+++.+++..|++..+.....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999988876554
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.61 E-value=0.00015 Score=60.93 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=78.0
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CC--------
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGD---------GEIMSQYAKLVWELHHDHDKALCYFERAVQAS---PA-------- 390 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~---p~-------- 390 (436)
..+...|.|+.|+-....++.+..++ .+++..+|.+++..++ |.+|...|++||+.. +.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e-yrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE-YRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 55678899999999999877664322 3488999999999999 999999999998642 11
Q ss_pred --------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHhhhhhc
Q 013821 391 --------------DSHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVTTANVY 435 (436)
Q Consensus 391 --------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~a~~y 435 (436)
+.++.+.++.|+.+++++++|+..++.+-...-........|++|
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 126889999999999999999998776433333333344455555
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.28 E-value=0.0017 Score=54.63 Aligned_cols=107 Identities=9% Similarity=0.045 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHH
Q 013821 271 QYAKLVWELHRDQHRALTYFERAALAAPQD---------SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEG 341 (436)
Q Consensus 271 ~la~~~~~~~~d~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~ 341 (436)
.-...++..+. |+.|+-....++.+..++ ..++..+| .+++..++|.+
T Consensus 25 dqik~L~d~~L-Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~la----------------------dalf~~~eyrr 81 (167)
T 3ffl_A 25 DHVRDMAAAGL-HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHA----------------------DSLFHDKEYRN 81 (167)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHH----------------------HHHHHTTCHHH
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHH----------------------HHHHcccHHHH
Confidence 33334444443 666666666655543222 23566777 66666677777
Q ss_pred HHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 342 AEEYFSRAILAN-------------------------PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLA 396 (436)
Q Consensus 342 A~~~~~~al~~~-------------------------p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~ 396 (436)
|...|++||... +.+.++.+.++.|+.++++ +++|+..++..-. .-..+.+..
T Consensus 82 A~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~-~~~Ai~~Le~Ip~-k~Rt~kvnm 159 (167)
T 3ffl_A 82 AVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ-DKDAIAILDGIPS-RQRTPKINM 159 (167)
T ss_dssp HHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTC-HHHHHHHHHTSCG-GGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCC-HHHHHHHHhcCCc-hhcCHHHHH
Confidence 777777765441 1224789999999999999 9999999876322 223577888
Q ss_pred HHHHHH
Q 013821 397 AYACFL 402 (436)
Q Consensus 397 ~la~~~ 402 (436)
.||.+|
T Consensus 160 ~LakLy 165 (167)
T 3ffl_A 160 LLANLY 165 (167)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 888775
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.12 E-value=0.015 Score=47.40 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCC
Q 013821 298 PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHD 373 (436)
Q Consensus 298 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d 373 (436)
.-..++.++++ +++.+.. +..+++.+++..++..|. .-+.++.+|..++++|+
T Consensus 36 ~vs~~t~F~YA----------------------w~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~- 92 (144)
T 1y8m_A 36 TATIQSRFNYA----------------------WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE- 92 (144)
T ss_dssp TSCHHHHHHHH----------------------HHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC-
T ss_pred CCcHHHHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh-
Confidence 45678888888 4554444 445788888888888884 56788899999999998
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013821 374 HDKALCYFERAVQASPADSHVLAAYAC 400 (436)
Q Consensus 374 ~~eA~~~~~~al~~~p~~~~~~~~la~ 400 (436)
|.+|..+.+..|+..|++..+......
T Consensus 93 Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 93 YSMAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999998776554443
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.07 E-value=0.0033 Score=50.73 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcC---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHH
Q 013821 300 DSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKG---DLEGAEEYFSRAILANPG-DGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 300 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~d~~ 375 (436)
.+.+.+++| +++.+.. +..+++..++..++.+|. .-+.++.+|..++++|+ |+
T Consensus 39 s~qt~F~yA----------------------w~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd-Y~ 95 (134)
T 3o48_A 39 TIQSRFNYA----------------------WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YS 95 (134)
T ss_dssp CHHHHHHHH----------------------HHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HH
T ss_pred ChhhHHHHH----------------------HHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh-HH
Confidence 567788888 4444443 445788888888888884 47889999999999999 99
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013821 376 KALCYFERAVQASPADSHVLAAYACF 401 (436)
Q Consensus 376 eA~~~~~~al~~~p~~~~~~~~la~~ 401 (436)
+|..+.+..|++.|++..+......+
T Consensus 96 ~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 96 MAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 99999999999999988776554443
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.95 E-value=0.028 Score=45.85 Aligned_cols=75 Identities=15% Similarity=0.026 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 013821 230 CHPLLLRNYAQLLQKKGDL---YRAEDYYNHATMADPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILA 305 (436)
Q Consensus 230 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~ 305 (436)
-..++.+++|.++....+. .+++..++..+...|. ..+.++.+|..+++++ +|.+|.++.+.+++..|++..+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~-~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3567777777777765543 3566666666666663 4455666666666665 366666666666666666655543
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.78 E-value=0.0072 Score=48.72 Aligned_cols=75 Identities=8% Similarity=-0.047 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHh
Q 013821 356 DGEIMSQYAKLVWELHH--DHDKALCYFERAVQASPAD-SHVLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQGAVT 430 (436)
Q Consensus 356 ~~~~~~~la~~~~~~g~--d~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 430 (436)
.+.+.+++|+++.+... |..+++.+++..+...|.. -+.++.+|..++++|+|++|..+.+.++++.|....+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 58899999999988755 2568999999999999854 588999999999999999999999999999999988766
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.56 E-value=0.12 Score=54.52 Aligned_cols=95 Identities=12% Similarity=-0.066 Sum_probs=53.3
Q ss_pred hhCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 013821 209 PNFDDSAEAEE-YYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRAL 287 (436)
Q Consensus 209 ~~~g~~~~A~~-~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~ 287 (436)
...+++++|.+ ++.. -| +...+...+..+...|.+++|+...+ ++...+.+ ....+ ++++|.
T Consensus 610 ~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~---~l~~~-~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFEL---ALKVG-QLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHH---HHHHT-CHHHHH
T ss_pred HHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchheeh---hhhcC-CHHHHH
Confidence 34577777766 4411 01 01222556666777888887776542 22222222 23444 477777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821 288 TYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 288 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
+..+ ..++...|..+|..+...++++.|.+.|.
T Consensus 673 ~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~ 705 (814)
T 3mkq_A 673 DLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFT 705 (814)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7643 33567778888877666666666665444
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.017 Score=60.76 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=81.2
Q ss_pred cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH---HHHHH
Q 013821 245 KGD-LYRAEDYYNHATMADPGDGESWMQYAKL--VWELHRDQHRALTYFERAALA--------APQDSNILA---AYACF 310 (436)
Q Consensus 245 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~d~~~A~~~~~~al~~--------~p~~~~~~~---~la~~ 310 (436)
.++ ++.|++++++..+.+|.....+. .+.+ +...+.+--+|+..+.++++. .+.+..... ..+.+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 455 57889999998888887643322 2222 111122245677777666642 233332211 11111
Q ss_pred HHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 311 LWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
+..+- ..+...|+++-|+++.++|+...|.+...|+.|+.+|..+|+ |+.|+-.+.-+
T Consensus 340 L~~Qa---------------~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d-~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQT---------------NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE-YEKALFAINSM 397 (754)
T ss_dssp HHHHH---------------HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHS
T ss_pred HHHHH---------------HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc-HHHHHHHHhcC
Confidence 11111 556678999999999999999999999999999999999999 99999776653
No 235
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.44 E-value=0.076 Score=48.22 Aligned_cols=122 Identities=16% Similarity=0.036 Sum_probs=84.3
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRA 286 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A 286 (436)
-+.+.|+.++|++.....++.+|.++.....+.+++.-.|++++|...++.+.+++|........+-. .-.|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~--------lI~a 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH--------LVKA 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH--------HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH--------HHHH
Confidence 45677999999999999999999999999999999999999999999999999999986543222111 1111
Q ss_pred HHHHHHHHHhC-----CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 287 LTYFERAALAA-----PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 287 ~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+..=.+++.-. +..+..|..+. ++.......|+.++|...-.+|++..|.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~l-------------------l~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSL-------------------VSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHH-------------------HHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHH-------------------HHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 11112222211 22333333222 1115556679999999999999888765
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.40 E-value=0.081 Score=51.26 Aligned_cols=166 Identities=8% Similarity=-0.079 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG-----ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNIL--- 304 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~--- 304 (436)
.+.+.+|.+|...|++++-.+++......-+.-+ .....+-..+....+..+.-++.+..+++...+.-..|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888887766543322211 11112222222222223333333333333222111111
Q ss_pred ---HHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHH
Q 013821 305 ---AAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG------DGEIMSQYAKLVWELHHDHD 375 (436)
Q Consensus 305 ---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~d~~ 375 (436)
..++ .+|...|+|.+|.+.+.+.++--.. -.+++..-..++..+++ +.
T Consensus 100 ~l~~kL~----------------------~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n-~~ 156 (394)
T 3txn_A 100 SLEARLI----------------------ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN-LP 156 (394)
T ss_dssp HHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc-HH
Confidence 1333 7788889999998888888765221 14567777778888888 99
Q ss_pred HHHHHHHHHHHhC---CCCH----HHHHHHHHHHH-HCCChHHHHHHHHHHHhh
Q 013821 376 KALCYFERAVQAS---PADS----HVLAAYACFLW-ETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 376 eA~~~~~~al~~~---p~~~----~~~~~la~~~~-~~g~~~eA~~~~~~al~l 421 (436)
++...+.++.... +.++ .+...-|..+. ..++|.+|...|-.+..-
T Consensus 157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 9999998887543 1223 34455677788 789999998888887644
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.14 E-value=0.093 Score=55.47 Aligned_cols=166 Identities=13% Similarity=0.058 Sum_probs=93.8
Q ss_pred hHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 013821 203 VVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRD 282 (436)
Q Consensus 203 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d 282 (436)
.+...+...|.+++|+...+ ++... .......|++++|.+..+ .-++...|..+|..+...++
T Consensus 634 ~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~- 696 (814)
T 3mkq_A 634 KIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN- 696 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC-
Confidence 34445666777777765542 22222 334577899999988754 34678899999999888874
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013821 283 QHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQ 362 (436)
Q Consensus 283 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (436)
++.|+++|.++-. .. .+..++...++.+...++. ......|++..|..+|.+. .+. ..
T Consensus 697 ~~~A~~~y~~~~d-----~~---~l~~l~~~~~~~~~~~~~~------~~a~~~~~~~~A~~~~~~~-----g~~---~~ 754 (814)
T 3mkq_A 697 FKLAIEAFTNAHD-----LE---SLFLLHSSFNNKEGLVTLA------KDAETTGKFNLAFNAYWIA-----GDI---QG 754 (814)
T ss_dssp HHHHHHHHHHHTC-----HH---HHHHHHHHTTCHHHHHHHH------HHHHHTTCHHHHHHHHHHH-----TCH---HH
T ss_pred HHHHHHHHHHccC-----hh---hhHHHHHHcCCHHHHHHHH------HHHHHcCchHHHHHHHHHc-----CCH---HH
Confidence 9999999998622 11 1222222233333322222 3334455555555444331 111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHH
Q 013821 363 YAKLVWELHHDHDKALCYFERAVQASPAD---SHVLAAYACFLWETEEDEDD 411 (436)
Q Consensus 363 la~~~~~~g~d~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA 411 (436)
...+|...++ +++|+.+-++ ..|.. ..+...++.-+...|+.+.|
T Consensus 755 a~~~~~~~~~-~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 755 AKDLLIKSQR-FSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHTTC-HHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCC-hHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 1234555667 7777776554 44443 25566666667777765433
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.059 Score=56.63 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 418 (436)
..+..-+..+...|+ ++-|+.+-++|+...|.....|..|+.+|..+|+++.|+-.++-+
T Consensus 338 ~LL~~Qa~FLl~K~~-~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGD-YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCc-HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455666777788888 999999999999999999999999999999999999998766544
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.4 Score=40.73 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=60.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHH
Q 013821 242 LQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDD 321 (436)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 321 (436)
....|+++.|.+..+.. ++...|..+|......++ ++-|+.+|+++- +... +.
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn-~~lAe~cy~~~~-----D~~~---L~------------- 67 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGN-ASLAEMIYQTQH-----SFDK---LS------------- 67 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC-HHHHHHHHHHTT-----CHHH---HH-------------
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC-hHHHHHHHHHhC-----CHHH---HH-------------
Confidence 35678888887776654 567778888877777764 777777777652 1111 11
Q ss_pred HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013821 322 KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFER 383 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~ 383 (436)
.+|.-.|+.++-...-+.+...... ..-..+++.+|+ +++++++|.+
T Consensus 68 ---------~Ly~~tg~~e~L~kla~iA~~~g~~-----n~af~~~l~lGd-v~~~i~lL~~ 114 (177)
T 3mkq_B 68 ---------FLYLVTGDVNKLSKMQNIAQTREDF-----GSMLLNTFYNNS-TKERSSIFAE 114 (177)
T ss_dssp ---------HHHHHHTCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHTC-HHHHHHHHHH
T ss_pred ---------HHHHHhCCHHHHHHHHHHHHHCccH-----HHHHHHHHHcCC-HHHHHHHHHH
Confidence 4455566666555554444433211 222334566788 8888888865
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.73 E-value=0.76 Score=38.54 Aligned_cols=44 Identities=7% Similarity=0.128 Sum_probs=31.9
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 013821 382 ERAVQASPADS-HVLAAYACFLWETEEDEDDSKSSDQFQQVAPIR 425 (436)
Q Consensus 382 ~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 425 (436)
++....-|.-+ ......+.-|+.+|-.++...+|......+|.|
T Consensus 197 kkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 197 KKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 33334456544 344667778888999999999999888888876
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.58 E-value=0.36 Score=46.69 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=71.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC--------C--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821 334 QSKGDLEGAEEYFSRAILANPG--------D--------------GEIMSQYAKLVWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~--------~--------------~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~ 391 (436)
...|+.+.|...+.+|+.+... . ..+...++..+...|+ +.+|+..+.+++..+|-+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~-~~~a~~~l~~~~~~~P~~ 204 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR-ASAVIAELEALTFEHPYR 204 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence 3468899999999999887421 1 1234456667788899 999999999999999999
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 392 SHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 392 ~~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
-.+|..+..++...|+..+|++.|+++..
T Consensus 205 E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 205 EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988655
No 242
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.36 E-value=0.19 Score=45.68 Aligned_cols=95 Identities=18% Similarity=0.127 Sum_probs=76.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HH-----------
Q 013821 332 PIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVL---AA----------- 397 (436)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~---~~----------- 397 (436)
.+.+.|++++|++.....++.+|.|......+-.+++-.|+ +++|.+-++.+.+++|+..... ..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~-w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v 84 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD-FERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 84 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence 35578999999999999999999999999999999999999 9999999999999998864221 11
Q ss_pred ---------------------HHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 398 ---------------------YACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 398 ---------------------la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
-+......|+.++|...-.++++..|...+
T Consensus 85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 122234468888888888888888776544
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.32 E-value=0.3 Score=47.31 Aligned_cols=60 Identities=8% Similarity=0.015 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHH
Q 013821 268 SWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFS 347 (436)
Q Consensus 268 ~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~ 347 (436)
+...++..+...+ ++.+|+..+++++..+|-+..++..+. .++...|+..+|++.|+
T Consensus 173 a~~~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm----------------------~al~~~Gr~~~Al~~y~ 229 (388)
T 2ff4_A 173 AHTAKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLI----------------------TAYYLSDRQSDALGAYR 229 (388)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHH----------------------HHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHH----------------------HHHHHcCCHHHHHHHHH
Confidence 3444566666666 499999999999999999999999998 66666666666666666
Q ss_pred HHH
Q 013821 348 RAI 350 (436)
Q Consensus 348 ~al 350 (436)
++-
T Consensus 230 ~~r 232 (388)
T 2ff4_A 230 RVK 232 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.35 Score=41.05 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=41.5
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHA 258 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 258 (436)
+....|+++.|.++.+.. ++...|..+|......|+++-|+++|+++
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 345679999999988765 67899999999999999999999999876
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.65 E-value=0.23 Score=49.72 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=64.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWE 404 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 404 (436)
.+......+..|..+|.+|+.+.|+++..++.||.+....|+ .-+|+-+|.+++......+.+..++..++.+
T Consensus 160 DL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~-~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccc-cHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 666777889999999999999999999999999999999998 8999999999998776678888887777654
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.63 E-value=0.14 Score=51.24 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=58.3
Q ss_pred hhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013821 200 AGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWE 278 (436)
Q Consensus 200 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 278 (436)
....+|.+......+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++..++-.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4456777777777777888888888888887778888888888777777778877777777666667777777665443
No 247
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.49 E-value=1.8 Score=44.44 Aligned_cols=86 Identities=9% Similarity=0.057 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013821 339 LEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQF 418 (436)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 418 (436)
..++..++.++.....+ ......++......|+ +..|..+|.+.-..........+.+|.++..+|+.++|..+|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d-~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGD-RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp CHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTC-HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCC-HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677777776654443 3344444444556677 999999998754433345778899999999999999999999998
Q ss_pred HhhCCCChh
Q 013821 419 QQVAPIRQG 427 (436)
Q Consensus 419 l~l~p~~~~ 427 (436)
.. ...|.+
T Consensus 346 a~-~~~fYg 353 (618)
T 1qsa_A 346 MQ-QRGFYP 353 (618)
T ss_dssp HT-SCSHHH
T ss_pred hc-CCChHH
Confidence 76 345544
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.37 E-value=0.49 Score=51.15 Aligned_cols=98 Identities=8% Similarity=-0.138 Sum_probs=82.6
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMID-----EYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP-GDGESWMQY 272 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 272 (436)
..+..+=..+++.|+.++|..+|+++.+ ..| +...|..+...|.+.|+.++|.+.|++..+..- -|...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 5677778899999999999999987653 345 788999999999999999999999999988643 377888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 013821 273 AKLVWELHRDQHRALTYFERAALAA 297 (436)
Q Consensus 273 a~~~~~~~~d~~~A~~~~~~al~~~ 297 (436)
-.++.+.++..++|.++|++..+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8888888765688999999988765
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.22 E-value=0.43 Score=46.17 Aligned_cols=166 Identities=10% Similarity=-0.013 Sum_probs=105.3
Q ss_pred hhhhhHHhhhhhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC--HH---
Q 013821 199 DAGEVVDLIMPNFDDSAEAEEYYKRMIDEYPCHP-----LLLRNYAQLLQK-KGDLYRAEDYYNHATMADPGD--GE--- 267 (436)
Q Consensus 199 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~--~~--- 267 (436)
.+...+|.+|...|++++-..++......-+.-+ .....+-..+.. .+..+.-++.+..+++-.... ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887776655433222 222233333322 345566666666666543222 11
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821 268 -SWMQYAKLVWELHRDQHRALTYFERAALAAPQ--DS----NILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 268 -~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
.-..+|.+|+..+ +|.+|.+.+.+.++--.. +. +++..-. .+|...+++.
T Consensus 100 ~l~~kL~~l~~~~~-~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~----------------------~~~~~~~n~~ 156 (394)
T 3txn_A 100 SLEARLIALYFDTA-LYTEALALGAQLLRELKKLDDKNLLVEVQLLES----------------------KTYHALSNLP 156 (394)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHH----------------------HHHHHTTCHH
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccccchhHHHHHHHHH----------------------HHHHHhccHH
Confidence 2337899998887 599999999988874322 21 1111222 7788889999
Q ss_pred HHHHHHHHHHHhC---CCCH----HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhC
Q 013821 341 GAEEYFSRAILAN---PGDG----EIMSQYAKLVW-ELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 341 ~A~~~~~~al~~~---p~~~----~~~~~la~~~~-~~g~d~~eA~~~~~~al~~~ 388 (436)
++...|.+|.... +.++ .....-|.++. ..++ |.+|...|-.++...
T Consensus 157 k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rd-yk~A~~~F~eaf~~f 211 (394)
T 3txn_A 157 KARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERD-FKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccC-HHHHHHHHHHHHhcc
Confidence 9999998887653 1223 34555666777 6777 999999998887543
No 250
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.57 E-value=0.59 Score=39.22 Aligned_cols=91 Identities=9% Similarity=-0.060 Sum_probs=61.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----------------CCCCHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA-----------------SPADSH 393 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-----------------~p~~~~ 393 (436)
.+++-.|.|..++-.+. .-+.....+.-+.|+..+++ |..|+..++..++- +|.+.+
T Consensus 41 I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKd-YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 41 IVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKD-YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence 56666777777765442 23445666777777777777 88888888877731 233333
Q ss_pred -HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 013821 394 -VLAAYACFLWETEEDEDDSKSSDQFQQVAPIRQG 427 (436)
Q Consensus 394 -~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 427 (436)
.+..+|.++.+.|+.++|+.+|......+|-|..
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 4566778888888888888888887777766543
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.51 E-value=1.7 Score=48.30 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=70.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHHcC
Q 013821 225 IDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-----------------------DPGDGESWMQYAKLVWELHR 281 (436)
Q Consensus 225 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~ 281 (436)
+..-|.++..-+.+|.++...|++++|..+|+++-.- ....+..|.....++...+
T Consensus 835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~- 913 (1139)
T 4fhn_B 835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES- 913 (1139)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS-
T ss_pred hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC-
Confidence 3455777777899999999999999999999887321 0112345566666655554
Q ss_pred CHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHccCchHHHHHHH
Q 013821 282 DQHRALTYFERAALAAPQ-DSN----ILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 282 d~~~A~~~~~~al~~~p~-~~~----~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
-++.+++..+.|++..+. +.. .|.++-.....++++++|-..+.
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 589999999999987654 332 56667766777777777766553
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.44 E-value=2.8 Score=45.44 Aligned_cols=97 Identities=11% Similarity=-0.109 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMA----DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-PQDSNILAAY 307 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~~~~~l 307 (436)
..|..+-..|.+.|+.++|..+|....+. -.-+...|..+...|++.|+ +++|.+.|++..+.. .-|...+..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~-~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-FKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 56888999999999999999999775432 34478899999999999986 999999999998775 3377888888
Q ss_pred HHHHHHccCc-hHHHHHHHHHHHH
Q 013821 308 ACFLWEMEDD-GEDDKAQEEHIQV 330 (436)
Q Consensus 308 a~~~~~~g~~-~~A~~~~~~~~~~ 330 (436)
..++.+.|+. ++|.++++++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 8889998885 6788899888887
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.99 E-value=1.1 Score=44.01 Aligned_cols=97 Identities=9% Similarity=0.082 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMAD-P-GD----GESWMQYAKLVWELHRDQHRALTYFERAAL---AAPQDSNI 303 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~----~~~~~~la~~~~~~~~d~~~A~~~~~~al~---~~p~~~~~ 303 (436)
.....|+.+|...|++.+|...+.....-. . .+ .+++.....++...+ |+.+|...+.++.. ..+..+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~-d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKG-DYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhcccCCcHHH
Confidence 456789999999999999999999886431 1 11 467777888888876 69999999998742 23334332
Q ss_pred ----HHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHh
Q 013821 304 ----LAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 304 ----~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 352 (436)
+...| .++...++|.+|..+|..++..
T Consensus 217 k~~~~~~~~----------------------~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLV----------------------KISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHH----------------------HHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHHhc
Confidence 23334 7777888999998888888765
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.63 E-value=0.51 Score=46.30 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADP---GDGESWMQYAKLVWELHRDQHRALTYFERAALAAP--QDSNILAAY 307 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p--~~~~~~~~l 307 (436)
.++..+|..|...|++++|.+.|.++..... .-.+.+.....++...+ |+..+..++.++-.... .+......+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~-d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN-DQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 5677888888888888888888888776532 23566777777777765 58888888888865532 222222111
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 308 ACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANP 354 (436)
Q Consensus 308 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 354 (436)
....| .++...++|.+|..+|..++....
T Consensus 211 ---k~~~g---------------l~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 ---KTYYG---------------IHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp ---HHHHH---------------HGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred ---HHHHH---------------HHHHHhChHHHHHHHHHHHhccCC
Confidence 11111 556678899999999988876643
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.42 E-value=11 Score=36.77 Aligned_cols=52 Identities=10% Similarity=0.083 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 212 DDSAEAEEYYKRMIDE------YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMADP 263 (436)
Q Consensus 212 g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 263 (436)
|++++|++.+...-+. .+....+...+..++...++++...+++.-..+...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ 87 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG 87 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 6778888777544432 133467888899999999999998887765544433
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.22 E-value=0.43 Score=46.86 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=76.7
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----H
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEY--PC-HPLLLRNYAQLLQKKGDLYRAEDYYNHATMAD--PGDGE----S 268 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~ 268 (436)
..++..+|..+++.|++++|.+.|.++.... +. -.+.++....++...+++..+..++.++-... ..++. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3578899999999999999999999998853 33 34888999999999999999999999997652 22322 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 013821 269 WMQYAKLVWELHRDQHRALTYFERAALAAP 298 (436)
Q Consensus 269 ~~~la~~~~~~~~d~~~A~~~~~~al~~~p 298 (436)
....|.++... ++|.+|...|-.++.-..
T Consensus 211 k~~~gl~~l~~-r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAV-RNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGT-SCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHh-ChHHHHHHHHHHHhccCC
Confidence 23344444444 469999999998877653
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.55 E-value=0.61 Score=46.52 Aligned_cols=125 Identities=11% Similarity=0.147 Sum_probs=52.8
Q ss_pred HHHHcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHh---
Q 013821 241 LLQKKGDLYRAEDYYNHATM---A--------DPGDGESWMQYAKLVWELHRDQHRA----------LTYFERAALA--- 296 (436)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~~~d~~~A----------~~~~~~al~~--- 296 (436)
.++..+++++|.++-...+. + ++-.+.+|+.++.++...+. .... ...+-.+++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~-~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLAR-SSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcc-cccccccccchhhHHHHHHHHHHHHhc
Confidence 34578899999888776651 1 33345566666666555543 3332 1222222222
Q ss_pred --CCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHH
Q 013821 297 --APQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPGD-------GEIMSQYAKL 366 (436)
Q Consensus 297 --~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~ 366 (436)
++.. ...+..+- +.|...+.|++|..+..++. .|.. ...++++|++
T Consensus 224 r~D~~~qa~l~nllL----------------------RnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI 279 (523)
T 4b4t_S 224 KHDNETKAMLINLIL----------------------RDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKI 279 (523)
T ss_dssp CSSSCHHHHHHHHHH----------------------HHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHH
T ss_pred ccCcchhHHHHHHHH----------------------HHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHH
Confidence 1221 22223333 77888899999999988884 4432 4567788999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCC
Q 013821 367 VWELHHDHDKALCYFERAVQASPAD 391 (436)
Q Consensus 367 ~~~~g~d~~eA~~~~~~al~~~p~~ 391 (436)
+.-+++ |.+|.+++..|+...|.+
T Consensus 280 ~a~q~~-Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 280 NAIQLD-YSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHTTC-HHHHHHHHHHHTSSCSCS
T ss_pred HHHhcc-HHHHHHHHHHHHHhCCcc
Confidence 999999 999999999999877754
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.40 E-value=9.5 Score=39.08 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 013821 362 QYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSS 415 (436)
Q Consensus 362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 415 (436)
..+..+...|. ...|...+..++... +..-...++.+....|.++.++...
T Consensus 386 ~r~~~L~~~g~-~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 386 ARVRELMYWNL-DNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-hhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 33445555565 556655555544321 1233344455555555555555433
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.11 E-value=4.2 Score=45.04 Aligned_cols=161 Identities=11% Similarity=-0.036 Sum_probs=90.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC--HHHHHHHHHHHHHc
Q 013821 238 YAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELHRDQHRALTYFERAALAA-PQD--SNILAAYACFLWEM 314 (436)
Q Consensus 238 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~--~~~~~~la~~~~~~ 314 (436)
+...+...+.++-|.+ .+...|.++...+.+|.++...++ +++|..+|+++...- .++ ......+..+...
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge-~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~- 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKE-AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK- 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT-
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccchhhhhhccccccccc-
Confidence 4444555666655443 344567777778888988888874 999999998873211 110 0000000000000
Q ss_pred cCchHHH-HHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821 315 EDDGEDD-KAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG-DG----EIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 315 g~~~~A~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~d~~eA~~~~~~al~~~ 388 (436)
....... ..|...+ .++.+.+.++.+++..+.|++..+. +. ..|.++=.....+|+ |++|...+...=. .
T Consensus 892 ~~~~~~l~~YY~hv~--~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~-ye~Ay~aL~~~pd-~ 967 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLS--KKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK-FDAAHVALMVLST-T 967 (1139)
T ss_dssp TTSCCSSHHHHHHHH--HHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC-SGGGGHHHHHHHH-S
T ss_pred ccccccHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC-HHHHHHHHHhCCC-H
Confidence 0000000 0111111 6777889999999999999988653 33 256777777888999 9999877754321 2
Q ss_pred CCCHHHHHHHHHHHHHCCCh
Q 013821 389 PADSHVLAAYACFLWETEED 408 (436)
Q Consensus 389 p~~~~~~~~la~~~~~~g~~ 408 (436)
......+..+...+++.|..
T Consensus 968 ~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHhCCCh
Confidence 22334555555555554443
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.86 E-value=0.26 Score=49.21 Aligned_cols=132 Identities=10% Similarity=0.004 Sum_probs=54.6
Q ss_pred hhhhCCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHh----
Q 013821 207 IMPNFDDSAEAEEYYKRMID-----------EYPCHPLLLRNYAQLLQKKGDLYRAE----------DYYNHATMA---- 261 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~-----------~~P~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~---- 261 (436)
.++..+++++|.++-...+. +++-.+.+|+.++.++...|+..... ..+-.++..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 44556788888777665541 23445678888888888888776532 223233322
Q ss_pred -CCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCH
Q 013821 262 -DPG-DGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDL 339 (436)
Q Consensus 262 -~p~-~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~ 339 (436)
++. .+..+..+-..|...+ .|++|..+..++. .|........++..++..| .++.-+++|
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~-~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~G---------------RI~a~q~~Y 286 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNG-EVDSASDFISKLE--YPHTDVSSSLEARYFFYLS---------------KINAIQLDY 286 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSS-CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHH---------------HHHHHTTCH
T ss_pred cCcchhHHHHHHHHHHHHccC-cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHH---------------HHHHHhccH
Confidence 232 3556777777777776 5999999999985 4432111112222222233 888999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 013821 340 EGAEEYFSRAILANPGD 356 (436)
Q Consensus 340 ~~A~~~~~~al~~~p~~ 356 (436)
.+|.+++..|++..|.+
T Consensus 287 ~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 287 STANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 99999999999987754
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.54 E-value=6 Score=42.51 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=66.7
Q ss_pred hhhhhhHHhhhhhCCCHHHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Q 013821 198 DDAGEVVDLIMPNFDDSAEAEEYYKRMIDEYP---C---HP----LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG- 266 (436)
Q Consensus 198 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 266 (436)
+++..++|.++...++ +++.++...+..+. . +. .+-..+|.++.-.++ +++.+.+...+..+....
T Consensus 413 ~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 4778888888877664 67888887776542 0 11 344566666665555 456666666666443211
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHH
Q 013821 267 -ESWMQYAKLVWELHRDQHRALTY-FERAALAAPQDSNILAAYACFLWEMEDDGEDDKAQE 325 (436)
Q Consensus 267 -~~~~~la~~~~~~~~d~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 325 (436)
.+-+.+|.++...+. .+|++. ++.+.+-..++..-...+|..+...|+.+.+..+++
T Consensus 490 ~~AalALGli~vGTgn--~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~ 548 (963)
T 4ady_A 490 EAAALGMGLCMLGTGK--PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLIT 548 (963)
T ss_dssp HHHHHHHHHHHTTCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHH
T ss_pred HHHHHHHhhhhcccCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHH
Confidence 234455655555543 344443 333343222222222334444556677666665554
No 262
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=85.63 E-value=20 Score=32.17 Aligned_cols=43 Identities=12% Similarity=-0.079 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKL 275 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 275 (436)
.-+..+|.+..+.++|++.+++.+++.+.++. ..+-...+..+
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvA 75 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVA 75 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 44556666666777777777777777666655 33333444433
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.97 E-value=29 Score=32.05 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013821 355 GDGEIMSQYAKLVWELHHDHDKALCYFE 382 (436)
Q Consensus 355 ~~~~~~~~la~~~~~~g~d~~eA~~~~~ 382 (436)
.+++.+..+|..++..|+ +.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~-~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDF-VYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCC-HHHHHHHHH
Confidence 356667777777776666 766666664
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.20 E-value=44 Score=31.16 Aligned_cols=136 Identities=12% Similarity=0.049 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHH
Q 013821 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQD-SNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGA 342 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A 342 (436)
.+++.+..+|..|++.+ ++.+|..+|- +..++ +..+..+-.-+...+...++.-.+.+++ ..|...++...|
T Consensus 134 Gdp~LH~~ig~~~~~e~-~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaV--L~yL~l~n~~~A 206 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEG-EFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYCARAV--LPYLLVANVRAA 206 (336)
T ss_dssp CCHHHHHHHHHHHHHTT-CHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHH--HHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHccC-CHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHH--HHHHHhCCHHHH
Confidence 46788888888888876 4888887773 12222 2344333222233333344444444444 667788888888
Q ss_pred HHHHHHHHH----hCC------------------CCHHH-HHHHHHHHHHhcC--CHHHHHHHHHHHHHhCC-CCHHHHH
Q 013821 343 EEYFSRAIL----ANP------------------GDGEI-MSQYAKLVWELHH--DHDKALCYFERAVQASP-ADSHVLA 396 (436)
Q Consensus 343 ~~~~~~al~----~~p------------------~~~~~-~~~la~~~~~~g~--d~~eA~~~~~~al~~~p-~~~~~~~ 396 (436)
...+..-++ .+| ..+.. ...+...-++.+. -|..-.+.|+..+..+| .....+.
T Consensus 207 ~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~ 286 (336)
T 3lpz_A 207 NTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALE 286 (336)
T ss_dssp HHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHH
T ss_pred HHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 776554432 223 22221 1111222233332 03444455566666777 6677888
Q ss_pred HHHHHHHHCC
Q 013821 397 AYACFLWETE 406 (436)
Q Consensus 397 ~la~~~~~~g 406 (436)
.+|..|+...
T Consensus 287 ~IG~~YFgi~ 296 (336)
T 3lpz_A 287 LIAEMYFGIQ 296 (336)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHcCCC
Confidence 8888888664
No 265
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=74.89 E-value=11 Score=30.36 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=29.5
Q ss_pred hhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 208 MPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
+-.+|.-++-.+.+...+...+-++..+..+|.+|.+.|+..+|.+.+.+|.+
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445555555555554444444566666666666666666666666666554
No 266
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=71.49 E-value=39 Score=27.32 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=36.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQA 387 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~ 387 (436)
..+..+|+-++-.+.+...+..++-+++.+..+|.+|.+.|. ..+|.+++.+|-+.
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~-~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGD-ERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc-hhhHHHHHHHHHHh
Confidence 444566666666666666555555567777777777777777 77777777776653
No 267
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=69.33 E-value=60 Score=28.59 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 013821 234 LLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKL 275 (436)
Q Consensus 234 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 275 (436)
-+..+|.+..+.++|++..++.+++.+.++. ..+-...+..+
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSva 52 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVA 52 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 3455666666667777776666666666655 33333334433
No 268
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=66.87 E-value=67 Score=28.24 Aligned_cols=44 Identities=11% Similarity=-0.086 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKLV 276 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 276 (436)
.-+..+|.+..+.++|++.+.+.+++++.++. ..+-...+..+|
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 44567788888889999999998888887765 444455555444
No 269
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=64.11 E-value=80 Score=28.20 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHh----CCCCHH---HHHHHHHHHHH-CCChHHHHHHHHHHHh
Q 013821 374 HDKALCYFERAVQA----SPADSH---VLAAYACFLWE-TEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 374 ~~eA~~~~~~al~~----~p~~~~---~~~~la~~~~~-~g~~~eA~~~~~~al~ 420 (436)
.+.|...|+.|+++ .|.+|. ...+++.+|+. +++.++|...-++++.
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35778888888764 566663 34555666665 7999999988887775
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=63.68 E-value=19 Score=25.38 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDGES 268 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (436)
..+|..+...|++++|..+|-+|+...|.-...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 456777788888888888888888877765543
No 271
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=63.59 E-value=82 Score=28.14 Aligned_cols=44 Identities=7% Similarity=-0.089 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMAD--PG-DGESWMQYAKLV 276 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~ 276 (436)
.-+..+|.+..+.++|++.+.+++++.+.+ +. ..+-...+..+|
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 345677788888888888888888888877 54 444444455443
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.32 E-value=97 Score=28.85 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHH---HHHHHHHH-hCCCCHHHHHHHHHH-HHHhcCC
Q 013821 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAE---EYFSRAIL-ANPGDGEIMSQYAKL-VWELHHD 373 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~---~~~~~al~-~~p~~~~~~~~la~~-~~~~g~d 373 (436)
.++..+..+|..+++.+++.+|..++ -.|.-+.|. ..+-+... ..|.....+...+.+ |..+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~----------ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n- 202 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL----------VLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVAN- 202 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH----------TTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH----------HhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCC-
Confidence 58999999999999998888876654 234433222 22222222 234556666665554 456667
Q ss_pred HHHHHHHHHHHHH
Q 013821 374 HDKALCYFERAVQ 386 (436)
Q Consensus 374 ~~eA~~~~~~al~ 386 (436)
...|...+...++
T Consensus 203 ~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 203 VRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999887665543
No 273
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=62.01 E-value=86 Score=27.80 Aligned_cols=44 Identities=11% Similarity=-0.028 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPG-DGESWMQYAKLV 276 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 276 (436)
.-+..+|.+..+.++|++...+.+++++.++. ..+-...+..+|
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAY 49 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAY 49 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 34567788888899999999999888888776 444445555443
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.55 E-value=92 Score=33.56 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=19.1
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013821 260 MADPGDGESWMQYAKLVWELHRDQHRALTYFERA 293 (436)
Q Consensus 260 ~~~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~a 293 (436)
..-|.++..-+.+|.++...|+ +++|..+|++|
T Consensus 834 ~~~~~t~~~~yv~gr~~L~~ge-~~~A~~~F~kA 866 (950)
T 4gq2_M 834 GWLNSDPIAVYLKALIYLKSKE-AVKAVRCFKTT 866 (950)
T ss_dssp GGCCSSHHHHHHHHHHHHHTTC-HHHHHHHHHTC
T ss_pred hhcCCChHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 4445555555666666666653 66666666655
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.39 E-value=54 Score=35.39 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=61.2
Q ss_pred hhhhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------------------CC
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DP--------------------GD 265 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p--------------------~~ 265 (436)
.+...|.++-| .+.+..-|.++..-+.+|.+|...|++++|..+|++|-.- .. ..
T Consensus 819 ~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~ 894 (950)
T 4gq2_M 819 KLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 894 (950)
T ss_dssp HHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCS
T ss_pred HHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccc
Confidence 34445555433 3345566788877899999999999999999999987421 11 11
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Q 013821 266 --GESWMQYAKLVWELHRDQHRALTYFERAALAA-PQDSN 302 (436)
Q Consensus 266 --~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~-p~~~~ 302 (436)
...|.+...++...+ -++-++...+.|++.- +++..
T Consensus 895 ~~~~YY~hV~~LFE~~~-a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 895 LLSCYYLHLSKKLFEES-AYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCSCCHH
T ss_pred hhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcccCCcc
Confidence 224555665555554 5999999999999754 44544
No 276
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=61.33 E-value=0.0019 Score=63.51 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHHH--------hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013821 299 QDSNILAAYACFLWEMEDDGEDDKAQEEHIQV--------LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWEL 370 (436)
Q Consensus 299 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (436)
+++.+|........+.+.+.-|...-...+-. ..|...|.|++-+..++.++.+...+......||.+|.+-
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 45555655555555555554433322211111 6678899999999999999999999999999999888765
Q ss_pred cCCHHHHHHHHHHHHH-hC-CC------CHHHHHHHHHHHHHCCChHHHHH
Q 013821 371 HHDHDKALCYFERAVQ-AS-PA------DSHVLAAYACFLWETEEDEDDSK 413 (436)
Q Consensus 371 g~d~~eA~~~~~~al~-~~-p~------~~~~~~~la~~~~~~g~~~eA~~ 413 (436)
+ .++-.++++--.. ++ |. ....|..+..+|.+-.+++.|+.
T Consensus 277 -~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -K-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -C-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -C-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4 5666666654221 11 22 23678888888998999998754
No 277
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=61.19 E-value=84 Score=27.43 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=37.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILA--------NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~ 386 (436)
.+-+..|+.+.|...|+.|+++ +|-......+++..|+..-++.++|..+-++|+.
T Consensus 133 lAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 133 KLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444566777888888888765 3334456666666676655558888888888765
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.87 E-value=79 Score=27.05 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHh---CCCCH-HHHHHHHHHHH---HcCCH--HH-HH-HHHHHHHHh---------CCCCHHHHHHHH
Q 013821 214 SAEAEEYYKRMIDE---YPCHP-LLLRNYAQLLQ---KKGDL--YR-AE-DYYNHATMA---------DPGDGESWMQYA 273 (436)
Q Consensus 214 ~~~A~~~~~~al~~---~P~~~-~~~~~la~~~~---~~g~~--~~-A~-~~~~~al~~---------~p~~~~~~~~la 273 (436)
..+-...|++.|.. ..++| +.|..+..-.. -.|.. +. =. ..+++++.. ||....+|..++
T Consensus 8 l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya 87 (202)
T 3esl_A 8 LNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYI 87 (202)
T ss_dssp HHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence 34455667776665 34555 55555544222 12332 11 23 577777764 223356777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHH
Q 013821 274 KLVWELHRDQHRALTYFERAALAA--PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 274 ~~~~~~~~d~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 351 (436)
..+. .....++...|.-+.... -..+..|..+| ..+...|++.+|.+.|+.+++
T Consensus 88 ~~~~--~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA----------------------~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 88 NLFL--SNNFHESENTFKYMFNKGIGTKLSLFYEEFS----------------------KLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHS--TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHH
T ss_pred Hhhc--ccccCCHHHHHHHHHHCCCcHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHH
Confidence 6541 112568888888887665 44677777888 888889999999999999998
Q ss_pred hCCC
Q 013821 352 ANPG 355 (436)
Q Consensus 352 ~~p~ 355 (436)
..-.
T Consensus 144 ~~A~ 147 (202)
T 3esl_A 144 NNCR 147 (202)
T ss_dssp TTCB
T ss_pred cCCc
Confidence 7643
No 279
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=57.27 E-value=21 Score=25.84 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=11.2
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 013821 334 QSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~ 351 (436)
...|++++|+.+|..+++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356677766666666554
No 280
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=56.28 E-value=63 Score=34.73 Aligned_cols=203 Identities=10% Similarity=0.028 Sum_probs=101.7
Q ss_pred hhHHhhhhhCCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---CH----
Q 013821 202 EVVDLIMPNFDDSAEAEEYYKRMIDEY-PCH----PLLLRNYAQLLQKKGDLYRAEDYYNHATMADP---G---DG---- 266 (436)
Q Consensus 202 ~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~---- 266 (436)
..+|.++ .|+.++++..+.+.+... ..+ .-+++.+|.++...+ .++++++...+..+. . ..
T Consensus 380 aSLGlIh--~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 380 ASLGVIH--KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHHHHT--SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred HHhhhhc--cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHH
Confidence 3444444 466677888777766522 122 245666666666555 468888888776543 1 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHccCchHHHHHHHHHHHH------------hH
Q 013821 267 ESWMQYAKLVWELHRDQHRALTYFERAALAAPQDS--NILAAYACFLWEMEDDGEDDKAQEEHIQV------------LP 332 (436)
Q Consensus 267 ~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~~ 332 (436)
.+...+|.++...+ -+++.+.+...+..+.... .+-+.+|.++...|+.+....++..+... ..
T Consensus 456 gAaLGLGla~~GS~--~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLG 533 (963)
T 4ady_A 456 GASLGIGLAAMGSA--NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLA 533 (963)
T ss_dssp HHHHHHHHHSTTCC--CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 24455666555443 3678888888877543221 23445665555555544333333211111 22
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHhcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 013821 333 IQSKGDLEGAEEYFSRAILANPGDGEIMS----QYAKLVWELHHDHDKALC-YFERAVQASPADSHVLAAYACFLWETEE 407 (436)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~d~~eA~~-~~~~al~~~p~~~~~~~~la~~~~~~g~ 407 (436)
+...|+.+.+....+.... . .++.+.+ .+|.+|...|+ ..|++ ++..+..-..++..-...+|..+...|+
T Consensus 534 ll~~g~~e~~~~li~~L~~-~-~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 534 LINYGRQELADDLITKMLA-S-DESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHH-C-SCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred hhhCCChHHHHHHHHHHHh-C-CCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 3345565555444444332 2 2233332 34555556666 45555 4444443322233333334444445566
Q ss_pred hHHHHHH
Q 013821 408 DEDDSKS 414 (436)
Q Consensus 408 ~~eA~~~ 414 (436)
.+.+...
T Consensus 610 ~e~v~rl 616 (963)
T 4ady_A 610 YTTVPRI 616 (963)
T ss_dssp CSSHHHH
T ss_pred HHHHHHH
Confidence 5444333
No 281
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=55.71 E-value=23 Score=25.60 Aligned_cols=18 Identities=33% Similarity=0.625 Sum_probs=10.8
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 013821 334 QSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~ 351 (436)
.+.|+|++|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 355666666666665553
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.42 E-value=85 Score=25.88 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCchHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 286 ALTYFERAALAA--PQDSNILAAYACFLWEMEDDGEDDKAQEEHIQVLPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 286 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
+..+|..+.... -..+..|..+| ..+...|++.+|.+.|+.+++....
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA----------------------~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWA----------------------EEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 445555555443 34566666677 6777778888888888888876543
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.41 E-value=1.2e+02 Score=26.03 Aligned_cols=63 Identities=10% Similarity=-0.016 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQA--SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQVA 422 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 422 (436)
.+|..++..+ ..+. ..++...|...... .-..+..|..+|..+...|++.+|.++|+.+++..
T Consensus 81 klWl~Ya~~~-~~~~-~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 81 KIWIWYINLF-LSNN-FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHH-STTC-HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh-cccc-cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444444433 1222 55777777776654 34556777788888888888888888888887754
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.42 E-value=1e+02 Score=24.97 Aligned_cols=45 Identities=20% Similarity=0.062 Sum_probs=22.0
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 013821 377 ALCYFERAVQA--SPADSHVLAAYACFLWETEEDEDDSKSSDQFQQV 421 (436)
Q Consensus 377 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 421 (436)
+...|...... .-..+..|..+|..+...|++.+|.++|+.+++.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44444443332 2333445555555555555555555555555544
No 285
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=48.55 E-value=31 Score=25.45 Aligned_cols=27 Identities=22% Similarity=0.052 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
..+-..+..+...|+|++||++.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 455677788888888888888665553
No 286
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=48.33 E-value=40 Score=28.86 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 233 LLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 233 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
...+.+|.++...++|.+|.+.+..|+...|...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4567778888888888888888888887777653
No 287
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=45.54 E-value=27 Score=26.01 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGDG 266 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (436)
..+|..+...|+++.|+.+|-+|+...|.-.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 4678888888889999998888887766533
No 288
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=43.05 E-value=54 Score=28.04 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=18.5
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCC
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGD 356 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (436)
.++...++|.+|.+.+..|++..|..
T Consensus 22 r~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 22 RKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 56666777777777777777776654
No 289
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.47 E-value=47 Score=24.48 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=9.1
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013821 335 SKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~ 351 (436)
..|+|++|+.+|..+++
T Consensus 27 ~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 27 AESRYQQALVCYQEGID 43 (93)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 44566555555555543
No 290
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=42.22 E-value=87 Score=32.16 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 013821 232 PLLLRNYAQLLQKKGDLYRAEDYYNHATMADPGDGESWMQYAKLVWELH 280 (436)
Q Consensus 232 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 280 (436)
.+.....|...+..|+|.-|.+..+.++..+|++..+...++.+|.+++
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3456667777888888888888888888888888888888888877765
No 291
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=41.53 E-value=62 Score=24.04 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=17.4
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPG 355 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~ 355 (436)
..+...|+++.|+.+|-+|+.+.|.
T Consensus 28 E~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 28 EELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 5556667777777777777776665
No 292
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=41.35 E-value=71 Score=22.42 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 013821 362 QYAKLVWELHHDHDKALCYFERAVQASPA 390 (436)
Q Consensus 362 ~la~~~~~~g~d~~eA~~~~~~al~~~p~ 390 (436)
.+|..+...|+ +++|..+|-+|+...|.
T Consensus 22 ~~GE~L~~~g~-~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGD-YEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHHcCC
Confidence 34555555555 66666666666665555
No 293
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=41.32 E-value=2.1e+02 Score=26.18 Aligned_cols=81 Identities=12% Similarity=-0.020 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHc--cCchHHHHHHHHHHHHhHHHHcCCHH
Q 013821 264 GDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQDSNILAAY-ACFLWEM--EDDGEDDKAQEEHIQVLPIQSKGDLE 340 (436)
Q Consensus 264 ~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~--g~~~~A~~~~~~~~~~~~~~~~g~~~ 340 (436)
.++..+..+|..|+..+ ++.+|..+|-..- .+++..+..+ ..++... +...++.-.+.+++ ..|...++..
T Consensus 132 Gdp~LH~~~a~~~~~e~-~~~~A~~H~i~~~---~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaV--L~yL~l~n~~ 205 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGD-FVYEAERYFMLGT---HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLV--FNYLFISNIS 205 (312)
T ss_dssp CCHHHHHHHHHHHHHTT-CHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH--HHHHHTTBHH
T ss_pred CCHHHHHHHHHHHhhcC-CHHHHHHHHHhCC---CccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HHHHHhcCHH
Confidence 46777888888887766 4877777774211 1122332222 2222221 33333333333333 5566778888
Q ss_pred HHHHHHHHHH
Q 013821 341 GAEEYFSRAI 350 (436)
Q Consensus 341 ~A~~~~~~al 350 (436)
.|...|..-.
T Consensus 206 ~A~~~~~~f~ 215 (312)
T 2wpv_A 206 FAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777766554
No 294
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.27 E-value=1.2e+02 Score=29.44 Aligned_cols=60 Identities=10% Similarity=-0.082 Sum_probs=44.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANP----------GDGEIMSQYAKLVWELHHDHDKALCYFERAVQA-SPAD 391 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~-~p~~ 391 (436)
.+|++.++...+...++..-...+ +-...++++|+++...++ |.+|.+.+..|+.. .|..
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~-y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQ-VHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHcc-HHHHHHHHHHHHHhcCCcc
Confidence 677888888877777754433222 124578899999998888 99999999999998 6654
No 295
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=40.92 E-value=43 Score=24.72 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 013821 360 MSQYAKLVWELHHDHDKALCYFERA 384 (436)
Q Consensus 360 ~~~la~~~~~~g~d~~eA~~~~~~a 384 (436)
+...+..+...|+ |++|+++.+++
T Consensus 18 ~~RrAe~ll~~gk-ydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGK-YEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred hhhHHHHHHhcCC-HHHHHHHHHHH
Confidence 3444555555555 55555555544
No 296
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=40.04 E-value=2e+02 Score=27.16 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=45.0
Q ss_pred CchhhhhhHHhhhhh--CCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 196 GFDDAGEVVDLIMPN--FDDSAEAEEYYKRMIDE-----YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 196 ~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
..+-+..+||.+-.. ......++.+|.+++.. .-.+.--|..+|..+++.+++.+|+..+..+-..
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 345566666653321 12223478888888874 3345677888999999999999999988877553
No 297
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=39.91 E-value=1.9e+02 Score=25.19 Aligned_cols=53 Identities=8% Similarity=-0.056 Sum_probs=40.8
Q ss_pred HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 244 KKGDLYRAEDYYNHATMA--------DPGDGESWMQYAKLVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~ 296 (436)
..|+.+.|...|+.|..+ +|-......+++..|+..-++.++|....++|+..
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 356678888889888764 34445677788888888888899999999888763
No 298
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.90 E-value=1.6e+02 Score=24.16 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---H---HHHHH-HHH--HHHHHcCCHHHHHHHHHHHHHh
Q 013821 236 RNYAQLLQKKGDLYRAEDYYNHATMADPGD---G---ESWMQ-YAK--LVWELHRDQHRALTYFERAALA 296 (436)
Q Consensus 236 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~---~~~~~-la~--~~~~~~~d~~~A~~~~~~al~~ 296 (436)
+..+..++..|+|=+|-+.++.+....+.. . ..+.. +|. .++..+ +..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rg-N~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFE-DDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 344555556677777777777776655443 1 12222 222 233344 478888888888763
No 299
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.09 E-value=1.2e+02 Score=24.81 Aligned_cols=59 Identities=15% Similarity=0.022 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHH------HHHHHHHHCCChHHHHHHHHHHHh
Q 013821 361 SQYAKLVWELHHDHDKALCYFERAVQASPAD---SHVLA------AYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 361 ~~la~~~~~~g~d~~eA~~~~~~al~~~p~~---~~~~~------~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
+.-+..++..|+ |-+|-+.++.+....+.. ...|. ..|...++.|+..-|...+.+++.
T Consensus 36 ~~~~i~lFn~g~-yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGE-FHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555666676 777777777776665443 12222 223345566777778888877766
No 300
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=37.98 E-value=50 Score=25.55 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=8.7
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013821 335 SKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~ 351 (436)
..|+|++|+.+|..+++
T Consensus 30 ~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34555555555555443
No 301
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=36.61 E-value=5e+02 Score=29.10 Aligned_cols=63 Identities=8% Similarity=0.059 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 013821 354 PGDGEIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQ 419 (436)
Q Consensus 354 p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 419 (436)
+.+..+.....+-....++ |-.|++++.++++-.|. .+.+..++.++..+|- .--..+.++.+
T Consensus 1281 ~~d~k~~~~~~~~~~~~~~-~g~~~k~l~k~~~~k~~-~~~~~~~~~~~~~l~w-~h~~~~~~~~~ 1343 (1354)
T 3lxu_X 1281 ANDSKAIQFALWHAYAHGH-YGRMYKYVVKLIEEKRT-RDHFVELAAINGALGH-EHIRTVINRMM 1343 (1354)
T ss_dssp TTSTTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHSC-HHHHHHHHHHH
T ss_pred cCCceeehhHHHHHHHHHH-HHHHHHHHHHHHhcccc-HHHHHHHHHHHHHcCC-HHHHHHHHhhh
Confidence 3444444433334446777 88888888888887774 5677777777777774 33444444443
No 302
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=36.58 E-value=67 Score=23.01 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=10.4
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013821 335 SKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 335 ~~g~~~~A~~~~~~al~ 351 (436)
..|+|++|+.+|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45666666666666554
No 303
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=35.33 E-value=63 Score=23.26 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=9.0
Q ss_pred HHcCCHHHHHHHHHHH
Q 013821 243 QKKGDLYRAEDYYNHA 258 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~a 258 (436)
-..|++++|+.+|..+
T Consensus 30 D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 4556666666554443
No 304
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=35.07 E-value=70 Score=31.23 Aligned_cols=61 Identities=8% Similarity=-0.070 Sum_probs=47.6
Q ss_pred HhhhhhCCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 013821 205 DLIMPNFDDSAEAEEYYKRMIDEYP----------CHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-DPGD 265 (436)
Q Consensus 205 g~~~~~~g~~~~A~~~~~~al~~~P----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 265 (436)
=.+|++.++..-+..+++..-...+ +-...++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 183 ~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 183 NNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3588999999988888866544332 12367889999999999999999999999988 6654
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.71 E-value=1.5e+02 Score=24.09 Aligned_cols=81 Identities=9% Similarity=0.134 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCC------CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHH
Q 013821 217 AEEYYKRMIDEYP------CHP---LLLRNYAQLLQKKGDLYRAEDYYNHATMA--DPGDGESWMQYAKLVWELHRDQHR 285 (436)
Q Consensus 217 A~~~~~~al~~~P------~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~d~~~ 285 (436)
-..++++++.... +++ .+|..++... +++.+.|.-+... .-..+..|...|..+...++ +.+
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~-~~~ 119 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGE-LQH 119 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC-HHH
Confidence 4456666665432 222 4444444432 2366666666543 45567777888877777764 888
Q ss_pred HHHHHHHHHHhCCCCHHHH
Q 013821 286 ALTYFERAALAAPQDSNIL 304 (436)
Q Consensus 286 A~~~~~~al~~~p~~~~~~ 304 (436)
|.+.|+..++....-.+-+
T Consensus 120 A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 120 ASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp HHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHcCCccHHHH
Confidence 8888888888765544443
No 306
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=34.51 E-value=67 Score=23.25 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=12.0
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 013821 334 QSKGDLEGAEEYFSRAILA 352 (436)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~ 352 (436)
...|+|++|+.+|..+++.
T Consensus 27 D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 3567777777666666543
No 307
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=33.80 E-value=55 Score=23.52 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=8.8
Q ss_pred HHcCCHHHHHHHHHHH
Q 013821 243 QKKGDLYRAEDYYNHA 258 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~a 258 (436)
-..|+|++|+.+|..+
T Consensus 22 D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 4456666666554443
No 308
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=33.50 E-value=39 Score=24.12 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013821 235 LRNYAQLLQKKGDLYRAEDYYNHATMA 261 (436)
Q Consensus 235 ~~~la~~~~~~g~~~~A~~~~~~al~~ 261 (436)
...+|.-|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 356777777888888888888877653
No 309
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=31.45 E-value=1.7e+02 Score=22.12 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=27.3
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~ 381 (436)
..+..+|+|++|....+.. + .++.--.++.+-++.|- .+++...+
T Consensus 48 sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl-~s~le~rL 92 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKL----A-YPDLEPWLALCEYRLGL-GSALESRL 92 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTS----C-CGGGHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhccc-HHHHHHHH
Confidence 4566778888777654432 1 34555556667777777 56555555
No 310
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=31.40 E-value=1.5e+02 Score=27.94 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013821 342 AEEYFSRAILA-----NPGDGEIMSQYAKLVWELHHDHDKALCYFERAV 385 (436)
Q Consensus 342 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al 385 (436)
++..|.+|+.. ...+...|..+|-.+++.++ +.+|+..+..|-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~-~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKK-YYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcch-HHHHHHHHHHHH
Confidence 56666666654 23345566666766677666 777777666553
No 311
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=30.25 E-value=1.5e+02 Score=28.52 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=42.4
Q ss_pred chhhhhhHHhhhh---hCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 197 FDDAGEVVDLIMP---NFDDSAEAEEYYKRMIDE-----YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 197 ~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 260 (436)
.+-+..+||.+-. .-|+ ..++.+|.+++.. .-.+.--|..+|..+++.+++.+|+..+..+-.
T Consensus 276 YPmALgnLgDLEe~~pt~gr-~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGR-PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTC-CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCC-CCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 3445555554322 2222 2477888888873 234567788899999999999999998887754
No 312
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.50 E-value=3.2e+02 Score=26.31 Aligned_cols=44 Identities=9% Similarity=-0.015 Sum_probs=31.6
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821 342 AEEYFSRAILA-----NPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 342 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~ 386 (436)
++..|.+|+.. ...+...|..+|-.+++.++ +.+|+..+..+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~-~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRN-VREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcch-HHHHHHHHHHHHH
Confidence 66677777655 34456777888888888888 8888888776543
No 313
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.48 E-value=88 Score=22.61 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=10.1
Q ss_pred HHcCCHHHHHHHHHHHH
Q 013821 243 QKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al 259 (436)
-..|+|++|+.+|..++
T Consensus 27 D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 45666666666555544
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.94 E-value=2.4e+02 Score=23.11 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=25.8
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 013821 251 AEDYYNHATMA--DPGDGESWMQYAKLVWELHRDQHRALTYFERAALAAPQ 299 (436)
Q Consensus 251 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~~~p~ 299 (436)
+.++|..+... .-..+..|..+|.++...+ ++.+|.+.|+..++....
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~-~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARE-NFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC
Confidence 44445444432 3345556666665555554 366666666666665543
No 315
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.41 E-value=3.3e+02 Score=25.67 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=56.1
Q ss_pred hhhhCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C
Q 013821 207 IMPNFDDSAEAEEYYKRMIDEY-----------------PCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA-------D 262 (436)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~-----------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~ 262 (436)
+.....+.++|++++++....- .....+...++..|...|+.++|..+++++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3445678899999888764321 011355667888899999999999999988653 2
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013821 263 PGDGESWMQYAKLVWELHRDQHRALTYFERAAL 295 (436)
Q Consensus 263 p~~~~~~~~la~~~~~~~~d~~~A~~~~~~al~ 295 (436)
|.....++.....|++..+++..+....-..+.
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 222223333333444445568777776666664
No 316
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.11 E-value=36 Score=24.32 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=22.3
Q ss_pred hhhHHhhhhhCCCHHHHHHHHHHHHHh
Q 013821 201 GEVVDLIMPNFDDSAEAEEYYKRMIDE 227 (436)
Q Consensus 201 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 227 (436)
...+|.-+...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345677788889999999999998874
No 317
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=26.74 E-value=1.7e+02 Score=22.13 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=26.2
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYF 381 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~ 381 (436)
..+..+|+|++|....+.. + .++.--.++.+-++.|- .+++...+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl-~s~le~rL 91 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN----P-WPALEPWFALCEWHLGL-GAALDRRL 91 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhccc-HHHHHHHH
Confidence 4456677777776544322 1 34455556666777777 55555555
No 318
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.64 E-value=2e+02 Score=29.50 Aligned_cols=48 Identities=17% Similarity=0.038 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQASPADSHVLAAYACFLWETE 406 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 406 (436)
+.....|...+..|+ |.-|.+....++..+|++..+...++.+|.++|
T Consensus 450 ~~~~~~a~~~~~~g~-~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGE-YRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 334444444445555 555555555555555555555555555555544
No 319
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=26.07 E-value=1.1e+02 Score=21.88 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=10.4
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 013821 243 QKKGDLYRAEDYYNHATM 260 (436)
Q Consensus 243 ~~~g~~~~A~~~~~~al~ 260 (436)
-..|+|++|+.+|..+++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 345667776665555443
No 320
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.62 E-value=1.1e+02 Score=22.43 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013821 214 SAEAEEYYKRMIDEYPCHPLLLRNYAQLLQKKGDLYRAEDYYNHAT 259 (436)
Q Consensus 214 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 259 (436)
.+.|+.++.+|++. -..|+|++|+.+|..++
T Consensus 12 l~~Ai~lv~~Ave~---------------D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 12 STAAVAVLKRAVEL---------------DAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHhCCHHHHHHHHHHHH
Confidence 45566655555443 34566666665544443
No 321
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=25.43 E-value=2e+02 Score=21.04 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=12.9
Q ss_pred hHHHHcCCHHHHHHHHHHHHH
Q 013821 331 LPIQSKGDLEGAEEYFSRAIL 351 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~ 351 (436)
....+.|+. |...+.+++.
T Consensus 49 ~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 49 LHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHcCcH--HHHHHHHHHH
Confidence 444456776 7777888766
No 322
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=24.81 E-value=99 Score=23.83 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=9.1
Q ss_pred HcCCHHHHHHHHHHHH
Q 013821 244 KKGDLYRAEDYYNHAT 259 (436)
Q Consensus 244 ~~g~~~~A~~~~~~al 259 (436)
..|+|++|+.+|..++
T Consensus 30 ~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 4566666666554443
No 323
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.35 E-value=55 Score=25.28 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 013821 374 HDKALCYFERAVQASPADSHVLAAYACFLWETEEDEDDSKSSDQFQQ 420 (436)
Q Consensus 374 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 420 (436)
+++|..+..++|.++.. |+.++|+++|++.+.
T Consensus 19 h~~AF~~Is~AL~~DE~---------------g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDEL---------------GQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHH---------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhc---------------CCHHHHHHHHHHHHH
No 324
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.48 E-value=3.1e+02 Score=23.67 Aligned_cols=41 Identities=10% Similarity=0.243 Sum_probs=32.7
Q ss_pred hHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013821 331 LPIQSKGDLEGAEEYFSRAILANPGDGEIMSQYAKLVWELH 371 (436)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (436)
.++.+.|.|++|.+.+++.+..++.+......|..+-.+..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 77889999999999999999887777767777776655443
No 325
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.02 E-value=5.3e+02 Score=24.75 Aligned_cols=79 Identities=10% Similarity=0.033 Sum_probs=49.6
Q ss_pred chhhhhhHHhhhhhC--CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 013821 197 FDDAGEVVDLIMPNF--DDSAEAEEYYKRMIDE-----YPCHPLLLRNYAQLLQKKGDLYRAEDYYNHATMA------DP 263 (436)
Q Consensus 197 ~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 263 (436)
.+-+..+||.+-.-. .....++.+|++++.. ...+.-.|..+|-.+++.+++.+|+..+..+-.. ..
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~r 340 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR 340 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCT
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhccccc
Confidence 445566666533211 1123467788888873 2345566788888888899999999888887553 34
Q ss_pred CCHHHHHHHHHH
Q 013821 264 GDGESWMQYAKL 275 (436)
Q Consensus 264 ~~~~~~~~la~~ 275 (436)
++.++|..+-.+
T Consensus 341 eDeEiYke~~eI 352 (489)
T 4gq4_A 341 EDEEIYKEFFEV 352 (489)
T ss_dssp TCHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 456665554443
No 326
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=20.66 E-value=4.2e+02 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 013821 358 EIMSQYAKLVWELHHDHDKALCYFERAVQ 386 (436)
Q Consensus 358 ~~~~~la~~~~~~g~d~~eA~~~~~~al~ 386 (436)
.....++.+++.. ..++...|...+.
T Consensus 137 ~Yi~~Ls~i~Fs~---I~~t~~~f~~~F~ 162 (235)
T 2d2s_A 137 NYLTQLAVIRFQT---IKKTVEDFQDIFK 162 (235)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhC
Confidence 3444566677665 6777777776543
No 327
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.02 E-value=4.3e+02 Score=22.84 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCchH-------HHHHHHHHHHH-----------------hHHHHcC
Q 013821 283 QHRALTYFERAALA-APQDSNILAAYACFLWEMEDDGE-------DDKAQEEHIQV-----------------LPIQSKG 337 (436)
Q Consensus 283 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~-------A~~~~~~~~~~-----------------~~~~~~g 337 (436)
..+....|++.|.. +..+-..-..+-.+.|....+.. -..++++++.. ..|...-
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~ 130 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI 130 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 013821 338 DLEGAEEYFSRAILANPGDGEIMSQYAKLVWELHHDHDKALCYFERAVQAS 388 (436)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~d~~eA~~~~~~al~~~ 388 (436)
+-...+-.|-..-.+.-..+..|..+|..+...|+ +.+|..+|+.+++..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~-~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGL-FQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC
Done!