Query 013822
Match_columns 436
No_of_seqs 114 out of 1357
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:44:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 3.2E-94 6.9E-99 762.2 49.4 428 9-436 85-518 (545)
2 PRK00013 groEL chaperonin GroE 100.0 1.2E-93 2.6E-98 755.6 49.4 428 9-436 84-517 (542)
3 PRK14104 chaperonin GroEL; Pro 100.0 1.5E-93 3.2E-98 755.4 48.2 428 9-436 85-518 (546)
4 PRK12849 groEL chaperonin GroE 100.0 2.3E-93 5E-98 753.4 49.2 428 8-436 83-516 (542)
5 PTZ00114 Heat shock protein 60 100.0 2.7E-93 5.9E-98 756.0 49.0 428 9-436 96-533 (555)
6 cd03344 GroEL GroEL_like type 100.0 9.1E-93 2E-97 746.7 49.8 427 9-436 82-514 (520)
7 TIGR02348 GroEL chaperonin Gro 100.0 1.4E-92 3.1E-97 746.4 49.2 427 9-436 83-515 (524)
8 CHL00093 groEL chaperonin GroE 100.0 2E-92 4.4E-97 746.0 47.4 427 8-436 83-518 (529)
9 PRK12850 groEL chaperonin GroE 100.0 3.4E-92 7.3E-97 745.5 48.6 427 9-436 85-517 (544)
10 PRK12851 groEL chaperonin GroE 100.0 4.5E-92 9.7E-97 744.1 48.7 427 9-436 85-517 (541)
11 PLN03167 Chaperonin-60 beta su 100.0 1.3E-91 2.7E-96 745.2 46.5 427 9-436 140-574 (600)
12 KOG0356 Mitochondrial chaperon 100.0 2E-86 4.3E-91 666.4 34.1 424 9-435 98-529 (550)
13 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 7.5E-74 1.6E-78 599.9 35.0 367 9-436 82-476 (484)
14 cd03343 cpn60 cpn60 chaperonin 100.0 4.2E-73 9.2E-78 600.0 40.8 373 9-436 85-510 (517)
15 COG0459 GroL Chaperonin GroEL 100.0 4.6E-75 9.9E-80 607.7 24.8 405 9-436 81-507 (524)
16 TIGR02347 chap_CCT_zeta T-comp 100.0 7.2E-73 1.6E-77 597.5 40.5 373 9-436 86-519 (531)
17 TIGR02339 thermosome_arch ther 100.0 1.1E-72 2.5E-77 596.5 40.3 373 9-436 86-513 (519)
18 cd03335 TCP1_alpha TCP-1 (CTT 100.0 4.7E-72 1E-76 592.6 40.3 378 9-436 78-519 (527)
19 TIGR02340 chap_CCT_alpha T-com 100.0 1.2E-71 2.7E-76 590.2 40.2 378 9-436 82-523 (536)
20 TIGR02342 chap_CCT_delta T-com 100.0 1.1E-71 2.3E-76 588.3 38.7 379 9-436 79-510 (517)
21 cd03338 TCP1_delta TCP-1 (CTT 100.0 7.2E-72 1.6E-76 590.1 37.4 380 9-436 78-509 (515)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2.4E-71 5.2E-76 587.1 39.4 373 9-436 93-521 (526)
23 TIGR02343 chap_CCT_epsi T-comp 100.0 6.4E-71 1.4E-75 583.6 39.8 373 9-436 97-525 (532)
24 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.5E-70 3.2E-75 580.8 41.1 376 9-436 86-513 (522)
25 TIGR02346 chap_CCT_theta T-com 100.0 4E-71 8.7E-76 585.0 35.1 372 9-436 88-513 (531)
26 TIGR02345 chap_CCT_eta T-compl 100.0 1.5E-70 3.2E-75 580.3 38.3 376 9-436 87-513 (522)
27 TIGR02344 chap_CCT_gamma T-com 100.0 2.9E-70 6.3E-75 578.9 39.5 373 9-436 86-515 (525)
28 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.8E-69 3.9E-74 571.4 40.5 372 9-436 85-507 (517)
29 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.3E-69 5E-74 565.8 35.9 356 9-436 86-474 (480)
30 PTZ00212 T-complex protein 1 s 100.0 2E-69 4.2E-74 572.7 35.2 372 9-436 97-519 (533)
31 TIGR02341 chap_CCT_beta T-comp 100.0 8.4E-69 1.8E-73 565.9 36.7 372 9-436 86-508 (519)
32 cd00309 chaperonin_type_I_II c 100.0 8.2E-68 1.8E-72 553.1 39.8 356 9-436 78-459 (464)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 5E-68 1.1E-72 554.6 38.1 358 9-436 78-465 (472)
34 KOG0361 Chaperonin complex com 100.0 5.3E-67 1.2E-71 504.2 24.7 376 9-436 90-516 (543)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 5.8E-63 1.3E-67 518.9 37.4 374 8-436 58-477 (485)
36 KOG0363 Chaperonin complex com 100.0 1.1E-59 2.4E-64 451.0 28.8 369 9-435 90-511 (527)
37 KOG0358 Chaperonin complex com 100.0 1.3E-59 2.8E-64 452.5 23.9 388 7-436 94-527 (534)
38 KOG0364 Chaperonin complex com 100.0 1.6E-56 3.5E-61 437.7 20.8 373 9-436 89-514 (527)
39 KOG0359 Chaperonin complex com 100.0 2.7E-55 5.9E-60 428.6 21.9 372 8-434 86-506 (520)
40 KOG0360 Chaperonin complex com 100.0 1.6E-53 3.5E-58 420.2 22.4 377 9-436 89-529 (545)
41 KOG0357 Chaperonin complex com 100.0 7.5E-52 1.6E-56 393.8 16.6 289 8-436 88-389 (400)
42 KOG0362 Chaperonin complex com 100.0 3.5E-48 7.6E-53 384.8 31.5 379 8-436 95-514 (537)
43 cd03333 chaperonin_like chaper 100.0 1.7E-28 3.7E-33 230.4 20.0 192 65-328 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 1.6E-25 3.5E-30 216.9 21.1 198 78-329 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 98.9 2.2E-08 4.7E-13 112.4 13.8 203 81-338 337-577 (1598)
46 COG0459 GroL Chaperonin GroEL 92.4 0.31 6.7E-06 52.1 6.9 90 156-261 259-355 (524)
47 TIGR02345 chap_CCT_eta T-compl 50.1 6.5 0.00014 42.2 0.6 60 166-226 246-314 (522)
48 PRK13600 putative ribosomal pr 48.8 67 0.0015 25.6 6.1 55 158-222 20-74 (84)
49 PTZ00212 T-complex protein 1 s 48.6 40 0.00088 36.2 6.4 45 86-130 178-223 (533)
50 smart00574 POX domain associat 46.2 41 0.00089 29.4 4.8 41 307-347 85-126 (140)
51 TIGR02341 chap_CCT_beta T-comp 37.8 68 0.0015 34.4 6.1 44 86-130 167-212 (519)
52 PF07526 POX: Associated with 34.5 62 0.0013 28.4 4.2 42 307-348 85-127 (140)
53 PF01985 CRS1_YhbY: CRS1 / Yhb 28.2 1.7E+02 0.0037 23.0 5.5 67 158-226 7-75 (84)
54 PRK10343 RNA-binding protein Y 24.7 3.6E+02 0.0078 22.1 6.8 68 157-226 8-77 (97)
55 KOG2144 Tyrosyl-tRNA synthetas 24.1 1.6E+02 0.0034 29.2 5.3 34 25-58 296-331 (360)
56 PF07818 HCNGP: HCNGP-like pro 23.5 1.3E+02 0.0028 24.6 4.0 53 371-431 32-85 (96)
57 PRK06683 hypothetical protein; 23.0 3E+02 0.0066 21.6 6.0 53 160-222 20-72 (82)
58 PF00205 TPP_enzyme_M: Thiamin 22.3 1.4E+02 0.0031 25.3 4.4 61 158-244 3-64 (137)
59 PRK13601 putative L7Ae-like ri 21.7 3E+02 0.0066 21.7 5.7 53 160-222 17-69 (82)
60 COG3962 Acetolactate synthase 21.7 42 0.0009 35.4 0.9 38 312-349 216-253 (617)
61 PF07131 DUF1382: Protein of u 20.3 2.5E+02 0.0054 20.9 4.4 52 34-88 4-55 (61)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.2e-94 Score=762.21 Aligned_cols=428 Identities=39% Similarity=0.594 Sum_probs=413.2
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAK 87 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~ 87 (436)
+||||||+++||++||++++++++ |+||+.|++||++|++.++++|+++++|+++.+++.+||++|+++++.+++++++
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~e 164 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQ 164 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHH
Confidence 699999999999999999999999 9999999999999999999999999999988778999999999989999999999
Q ss_pred HHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcC
Q 013822 88 VFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 167 (436)
Q Consensus 88 a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~ 167 (436)
|+.+++.++.|+++.|++..+++++++|++|++||.+|||++++++|+.+++||+|+++|++|+++++++++++.+.++|
T Consensus 165 A~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g 244 (545)
T PRK12852 165 AMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSG 244 (545)
T ss_pred HHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhC
Confidence 99999998999999988876789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE
Q 013822 168 QSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI 247 (436)
Q Consensus 168 ~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~ 247 (436)
+||||++++|+++||++|+.|+.++.++|++||+|+||++|+++|+|||.+|||++++++.+.+++++++++||+|+.|+
T Consensus 245 ~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~ 324 (545)
T PRK12852 245 KPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVV 324 (545)
T ss_pred cCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999998777789999999999999999
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHH
Q 013822 248 ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ 323 (436)
Q Consensus 248 i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k 323 (436)
+++++|++++++++++.++.|+++|+.+++++.+ ++|+|||+||+|++|||+|||+|+.+++|+||+++||+|++|
T Consensus 325 ~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~ 404 (545)
T PRK12852 325 IDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATR 404 (545)
T ss_pred EEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998866 899999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCC
Q 013822 324 AAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARG 402 (436)
Q Consensus 324 ~al~~gvV~GGGa~e~~~s~~L~~~~~~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~g 402 (436)
+++++|||||||++|+++++.|++++..++++|+|+++|++||++|||+||+|||+|+.++ ++|++..++++|||+.+|
T Consensus 405 ~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g 484 (545)
T PRK12852 405 AAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTE 484 (545)
T ss_pred HHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCC
Confidence 9999999999999999999999988766788999999999999999999999999999999 999876667899999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 403 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 403 ~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+++||++.|||||+.||.++|++|+++|++||+|
T Consensus 485 ~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (545)
T PRK12852 485 EYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTT 518 (545)
T ss_pred CcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999986
No 2
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.2e-93 Score=755.56 Aligned_cols=428 Identities=41% Similarity=0.585 Sum_probs=412.0
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAK 87 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~ 87 (436)
+||||||+++|+++||++++++++ |+||..|++||+.|.+.++++|+++++|+++.++|.++|++|+++++.+++++++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~ 163 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAE 163 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHH
Confidence 799999999999999999999999 9999999999999999999999999999988889999999999889999999999
Q ss_pred HHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcC
Q 013822 88 VFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 167 (436)
Q Consensus 88 a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~ 167 (436)
|+..++.++.|.|+.+++..+++++++|++|++||.+|||.++++.++..++||+|+++|++|++++++.++++++.++|
T Consensus 164 Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g 243 (542)
T PRK00013 164 AMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSG 243 (542)
T ss_pred HHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhC
Confidence 99999988889998777777789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE
Q 013822 168 QSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI 247 (436)
Q Consensus 168 ~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~ 247 (436)
+||||++++|+++|+++|+.|+++++++|++||+|+||++|+++|+|||++|||++++++.+++++++++++||+|+.|+
T Consensus 244 ~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~ 323 (542)
T PRK00013 244 KPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVV 323 (542)
T ss_pred CCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999998878789999999999999999
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHH
Q 013822 248 ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ 323 (436)
Q Consensus 248 i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k 323 (436)
+++++|+|+++|++++++..|+++|+++++++.+ ++|+||++||+|+++||+|||+|+.+++|+||+++||+|++|
T Consensus 324 ~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk 403 (542)
T PRK00013 324 VTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATR 403 (542)
T ss_pred EecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998877 999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCC
Q 013822 324 AAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARG 402 (436)
Q Consensus 324 ~al~~gvV~GGGa~e~~~s~~L~~~~~~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~g 402 (436)
+++++|||||||++|+++|+.|+++...++++|+++++|++||+.|||+||+|||+|+.++ .+|++..++++|||+.+|
T Consensus 404 ~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g 483 (542)
T PRK00013 404 AAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATG 483 (542)
T ss_pred HHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCC
Confidence 9999999999999999999999988435889999999999999999999999999999999 999875567899999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 403 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 403 ~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 484 ~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (542)
T PRK00013 484 EYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTT 517 (542)
T ss_pred ceeehhhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986
No 3
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.5e-93 Score=755.45 Aligned_cols=428 Identities=40% Similarity=0.600 Sum_probs=413.2
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAK 87 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~ 87 (436)
+||||||+++||++||++++++++ |+||+.|++||++|++.+++.|+++++|+++.+++.+||++|+++++.+++++++
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~ 164 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLAD 164 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHH
Confidence 699999999999999999999999 9999999999999999999999999999987778999999999999999999999
Q ss_pred HHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcC
Q 013822 88 VFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 167 (436)
Q Consensus 88 a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~ 167 (436)
|+.++|.+|.|+++.+++.++++++++|++|++||.||||+++++.+..+++||+|+++|.+++++++++|+++.+.++|
T Consensus 165 Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g 244 (546)
T PRK14104 165 AMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTG 244 (546)
T ss_pred HHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhC
Confidence 99999999999999888776789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE
Q 013822 168 QSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI 247 (436)
Q Consensus 168 ~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~ 247 (436)
+||||++++|+++||++|..|++++.++|+|||+|+||++|+++|+|||++|||++++++.++.++++++++||+|++++
T Consensus 245 ~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~ 324 (546)
T PRK14104 245 KPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVM 324 (546)
T ss_pred cCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHH
Q 013822 248 ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ 323 (436)
Q Consensus 248 i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k 323 (436)
+++++|+++++|+++++++.|+++|+.+++++.+ ++|+||++||+|++|||+|||+|+++++|+||+++||+|++|
T Consensus 325 ~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~ 404 (546)
T PRK14104 325 IDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATR 404 (546)
T ss_pred EcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877 999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCC
Q 013822 324 AAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARG 402 (436)
Q Consensus 324 ~al~~gvV~GGGa~e~~~s~~L~~~~~~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~g 402 (436)
+++++|||||||++|++++..|+++...++++|+|+++|++||+.||++||+|||+|+.++ .+|++.+++++|||+.+|
T Consensus 405 ~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g 484 (546)
T PRK14104 405 AAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTG 484 (546)
T ss_pred HHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCC
Confidence 9999999999999999999999988555889999999999999999999999999999999 999875567899999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 403 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 403 ~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 485 ~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~i 518 (546)
T PRK14104 485 EYGNLVSKGIIDPTKVVRTAIQNAASVAALLITT 518 (546)
T ss_pred ceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985
No 4
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-93 Score=753.38 Aligned_cols=428 Identities=42% Similarity=0.601 Sum_probs=413.0
Q ss_pred cccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHH
Q 013822 8 YLFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIA 86 (436)
Q Consensus 8 ~~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~ 86 (436)
-+||||||+++||++||++++++++ |+||..|++||++|++.++++|+++++|+++.++|.++|+||+++++.++++++
T Consensus 83 e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~ 162 (542)
T PRK12849 83 VAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIA 162 (542)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHH
Confidence 3799999999999999999999999 999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHc
Q 013822 87 KVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQ 166 (436)
Q Consensus 87 ~a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~ 166 (436)
+|+..++.++.+.++.|++..|++++++|++|++||.+|||.++.+.++..++||+|+++|++|++++++.++++++.++
T Consensus 163 ~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~ 242 (542)
T PRK12849 163 EAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQS 242 (542)
T ss_pred HHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHh
Confidence 99999998888999999988878999999999999999999998889999999999999999999999999999999999
Q ss_pred CCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE
Q 013822 167 GQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV 246 (436)
Q Consensus 167 ~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v 246 (436)
|+||||++++|+++|+++|+.|++++.++|++||+|+|+++|+++|+|||.+|||+++++..+.+++++++++||+|+.|
T Consensus 243 ~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v 322 (542)
T PRK12849 243 GKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRV 322 (542)
T ss_pred CCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999887778999999999999999
Q ss_pred EEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHH
Q 013822 247 IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAV 322 (436)
Q Consensus 247 ~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~ 322 (436)
++++++|+++++|++++++..|+++|+++++++++ ++|+||++||+|++|||+|||+|+.+++|+||+++||+|++
T Consensus 323 ~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~ 402 (542)
T PRK12849 323 TITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNAT 402 (542)
T ss_pred EEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876 99999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCC
Q 013822 323 QAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR 401 (436)
Q Consensus 323 k~al~~gvV~GGGa~e~~~s~~L~~~~~~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~ 401 (436)
|+++++|||||||++|+++|+.|++++..++++|+++++|++||+.|||+||+|||+|+.++ ++|++.. +++|||+.+
T Consensus 403 ~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~ 481 (542)
T PRK12849 403 RAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAAT 481 (542)
T ss_pred HHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCC
Confidence 99999999999999999999999998845899999999999999999999999999999999 9998754 689999999
Q ss_pred CccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 402 GNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 402 g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
|++.||++.|||||+.||.++|++|+++|++||+|
T Consensus 482 g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~i 516 (542)
T PRK12849 482 GEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTT 516 (542)
T ss_pred CccccHHhccCccCHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999986
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=2.7e-93 Score=755.97 Aligned_cols=428 Identities=43% Similarity=0.637 Sum_probs=411.7
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAK 87 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~ 87 (436)
+||||||+++||++||++++++++ |+||..|++||+.|.+.++++|+++++|+++.++|.++|+||+++++.+++++++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~e 175 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIAD 175 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHH
Confidence 799999999999999999999999 9999999999999999999999999999988888999999999989999999999
Q ss_pred HHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcC
Q 013822 88 VFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 167 (436)
Q Consensus 88 a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~ 167 (436)
|+.+++.+|.|.+++|++.+|++++++|++|++||.||||+++++.|+.+++||+|+++|++|++++++.++++.+.++|
T Consensus 176 Av~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~ 255 (555)
T PTZ00114 176 AMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNK 255 (555)
T ss_pred HHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 99999988889999999988767999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCC-CCCCcCCCCCCCceeeeEE
Q 013822 168 QSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGG-SGMNSTYFVPLKLGSCKRV 246 (436)
Q Consensus 168 ~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~-~~~~~~~~~~~~LG~a~~v 246 (436)
+||+|++++|+++||++|+.|+++++++|++||+|+||++|+++|+|||.+|||+++++. .+..++++++++||+|++|
T Consensus 256 ~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v 335 (555)
T PTZ00114 256 RPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKV 335 (555)
T ss_pred CCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceE
Confidence 999999999999999999999999999999999999999999999999999999999997 6777789999999999999
Q ss_pred EEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHH
Q 013822 247 IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAV 322 (436)
Q Consensus 247 ~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~ 322 (436)
++++++++++++++++++|++|+++++.+++.+++ ++|+||++||+|++|||+|||+|+++++|++|+++||+|++
T Consensus 336 ~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~ 415 (555)
T PTZ00114 336 TVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNAT 415 (555)
T ss_pred EEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765 89999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEe
Q 013822 323 QAAKEEGIVPGSGVALLYASKELDKLQT---TNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYN 398 (436)
Q Consensus 323 k~al~~gvV~GGGa~e~~~s~~L~~~~~---~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d 398 (436)
|+++++|||||||++|+++|..|++++. .++++|+|+++|++||+.||++||+|||+|+.++ ++|++.+++++|||
T Consensus 416 k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d 495 (555)
T PTZ00114 416 RAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYD 495 (555)
T ss_pred HHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEe
Confidence 9999999999999999999999998864 3789999999999999999999999999999999 99987556789999
Q ss_pred CCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 399 PARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 399 ~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 496 ~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~i 533 (555)
T PTZ00114 496 AQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTT 533 (555)
T ss_pred CCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999985
No 6
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.1e-93 Score=746.72 Aligned_cols=427 Identities=44% Similarity=0.638 Sum_probs=412.7
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAK 87 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~ 87 (436)
+||||||+++||++||++++++++ |+||..|++||+.|.+.++++|+++++|+++.++|.++|+||+++++.+++++++
T Consensus 82 ~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~ 161 (520)
T cd03344 82 AGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAE 161 (520)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHH
Confidence 799999999999999999999999 9999999999999999999999999999998889999999999999999999999
Q ss_pred HHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcC
Q 013822 88 VFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 167 (436)
Q Consensus 88 a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~ 167 (436)
|+..++.++.|.+++|++..|++++++|++|++||.+|||.++++++..+++||+|+++|+++++++++.++++++.++|
T Consensus 162 A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~ 241 (520)
T cd03344 162 AMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAG 241 (520)
T ss_pred HHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 99999988889999999988779999999999999999999999889999999999999999999999999999999999
Q ss_pred CCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE
Q 013822 168 QSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI 247 (436)
Q Consensus 168 ~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~ 247 (436)
+||+|++++|+++++++|..|++++.+++++||+|++|++++++|+|||.+|||++++++.+.+++++++++||+|+.|+
T Consensus 242 ~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~ 321 (520)
T cd03344 242 RPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVV 321 (520)
T ss_pred CCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999998777789999999999999999
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHH
Q 013822 248 ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ 323 (436)
Q Consensus 248 i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k 323 (436)
+++++|+|+++|+++++++.|+++++++++++.+ ++|+||++||+|++|||+|||+|+.+++|+||+++||+|++|
T Consensus 322 ~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k 401 (520)
T cd03344 322 VTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATR 401 (520)
T ss_pred EeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998876 999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCC
Q 013822 324 AAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARG 402 (436)
Q Consensus 324 ~al~~gvV~GGGa~e~~~s~~L~~~~~~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~g 402 (436)
+++++|||||||++|+++++.|++++..++++|+|+++|++||+.||++||+|||+||.++ ++|++..+ ++|||+.+|
T Consensus 402 ~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g 480 (520)
T cd03344 402 AAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATG 480 (520)
T ss_pred HHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCC
Confidence 9999999999999999999999998767889999999999999999999999999999999 99987654 899999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 403 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 403 ~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+++||++.|||||+.||.++|++|+++|++||+|
T Consensus 481 ~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~i 514 (520)
T cd03344 481 EYVDMIEAGIIDPTKVVRSALQNAASVASLLLTT 514 (520)
T ss_pred cccchHhccCeecHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999986
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.4e-92 Score=746.39 Aligned_cols=427 Identities=40% Similarity=0.592 Sum_probs=410.4
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAK 87 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~ 87 (436)
+||||||+++||++||+++.++++ |+||..|++||++|++.++++|+++++|+++.++|.++|++|+++++++++++++
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~ 162 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAE 162 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHH
Confidence 699999999999999999999999 9999999999999999999999999999988889999999999989999999999
Q ss_pred HHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcC
Q 013822 88 VFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 167 (436)
Q Consensus 88 a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~ 167 (436)
|+..++.++.|.|+.|++..+++++++|++|++||.+|||.+++++++..++||+|+++|++|++++++.++++++.++|
T Consensus 163 A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g 242 (524)
T TIGR02348 163 AMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSG 242 (524)
T ss_pred HHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhC
Confidence 99999998889998888887889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE
Q 013822 168 QSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI 247 (436)
Q Consensus 168 ~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~ 247 (436)
+||||++++|+++||++|+.|+++++++|++||+|+||++|+++|+|||++|||++++.+.+++++++++++||+|+.|+
T Consensus 243 ~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~ 322 (524)
T TIGR02348 243 KPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVT 322 (524)
T ss_pred cCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999998777789999999999999999
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHH
Q 013822 248 ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ 323 (436)
Q Consensus 248 i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k 323 (436)
+++++|++++++++++++..|+++++++++++.+ ++|+||++||+|+++||+|||+|+.+++|++|+++||+|++|
T Consensus 323 ~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r 402 (524)
T TIGR02348 323 VDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATR 402 (524)
T ss_pred EeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998876 999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCC
Q 013822 324 AAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARG 402 (436)
Q Consensus 324 ~al~~gvV~GGGa~e~~~s~~L~~~~~~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~g 402 (436)
+++++|||||||++|+++|+.|++....++++|+|+++|++||+.|||+||+|||+||.++ ++|++. +.++|||+.+|
T Consensus 403 ~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g 481 (524)
T TIGR02348 403 AAVEEGIVPGGGVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATG 481 (524)
T ss_pred HHHhcCCccCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCC
Confidence 9999999999999999999999883334889999999999999999999999999999999 999875 33599999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 403 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 403 ~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
++.||++.|||||+.||.++|++|+++|++||+|
T Consensus 482 ~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 515 (524)
T TIGR02348 482 EYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTT 515 (524)
T ss_pred cccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999986
No 8
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2e-92 Score=746.03 Aligned_cols=427 Identities=36% Similarity=0.542 Sum_probs=408.6
Q ss_pred cccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHH
Q 013822 8 YLFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIA 86 (436)
Q Consensus 8 ~~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~ 86 (436)
-+||||||++|||++||++|+++++ |+||+.|++||++|.+.+++.|+++++|+++.++|.+||++|+++++.|+++++
T Consensus 83 e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~ 162 (529)
T CHL00093 83 VAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIA 162 (529)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHHHH
Confidence 4799999999999999999999999 999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCH-HHHHHHHHHHHH
Q 013822 87 KVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-NVIRQASLPCMM 165 (436)
Q Consensus 87 ~a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~-~~i~~~le~i~~ 165 (436)
+|+.++|.+|.|+++.|++..+++++++|++|++||.||||++++++|..+++||+|+++|++|+.. .++.++++.+.+
T Consensus 163 eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~ 242 (529)
T CHL00093 163 DAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTK 242 (529)
T ss_pred HHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHh
Confidence 9999999889899988877777899999999999999999999999999999999999999999987 789999999999
Q ss_pred cCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeE
Q 013822 166 QGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKR 245 (436)
Q Consensus 166 ~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~ 245 (436)
+|+|++|++++|++++|++|+.|+.+++++|++||+|++|++|+++|+|||++|||++++++.+.+++++++++||+|+.
T Consensus 243 ~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~ 322 (529)
T CHL00093 243 TKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARR 322 (529)
T ss_pred cCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceE
Confidence 99999999999999999999999999889999999999999999999999999999999988888899999999999999
Q ss_pred EEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHH
Q 013822 246 VIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHA 321 (436)
Q Consensus 246 v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a 321 (436)
|++++++|+|++ .++++.+..|+++++++++.+++ ++|+||++||+|+++||+|||+|+++++|+||+++||+|+
T Consensus 323 v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a 401 (529)
T CHL00093 323 IIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINA 401 (529)
T ss_pred EEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 999999999998 57789999999999999998877 8999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEe
Q 013822 322 VQAAKEEGIVPGSGVALLYASKELDKLQT--TNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYN 398 (436)
Q Consensus 322 ~k~al~~gvV~GGGa~e~~~s~~L~~~~~--~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d 398 (436)
+|+++++|+|||||++|+++|+.|++++. .++++|+|+++|++||+.||++||+|||+|+.++ ++++.. +.++|||
T Consensus 402 ~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d 480 (529)
T CHL00093 402 TKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYN 480 (529)
T ss_pred HHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEE
Confidence 99999999999999999999999998864 4889999999999999999999999999999999 999765 4689999
Q ss_pred CCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 399 PARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 399 ~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+.+|+++||++.|||||+.||.++|++|+++|++||+|
T Consensus 481 ~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (529)
T CHL00093 481 AANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTT 518 (529)
T ss_pred CCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.4e-92 Score=745.46 Aligned_cols=427 Identities=40% Similarity=0.583 Sum_probs=409.9
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAK 87 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~ 87 (436)
+||||||+++||++||++++++++ |+||..|++||+.|++.++++|+++++|+++.++|.++|++|+++++.+++++++
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~e 164 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAE 164 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 699999999999999999999999 9999999999999999999999999999988888999999999989999999999
Q ss_pred HHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcC
Q 013822 88 VFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 167 (436)
Q Consensus 88 a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~ 167 (436)
|+..++.++.|.++.+....+++++++|++|++||.||||++++++++.+++||+|+++|+++++.+++.++++++.++|
T Consensus 165 Av~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g 244 (544)
T PRK12850 165 AMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSG 244 (544)
T ss_pred HHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhC
Confidence 99999988888888766666789999999999999999999999899999999999999999999999999999999999
Q ss_pred CCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE
Q 013822 168 QSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI 247 (436)
Q Consensus 168 ~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~ 247 (436)
+||||++++|++++|++|+.|++++.+++++||+|+||++|+++|+|||++|||++++++.+++++++++++||+|+.|+
T Consensus 245 ~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~ 324 (544)
T PRK12850 245 RPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVL 324 (544)
T ss_pred CCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999998777779999999999999999
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHH
Q 013822 248 ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ 323 (436)
Q Consensus 248 i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k 323 (436)
+++++|+++++|++++++..|+++++++++.+.+ ++|+||++||+|++|||+|||+|+++++|+||+++||+|++|
T Consensus 325 ~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k 404 (544)
T PRK12850 325 ITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATR 404 (544)
T ss_pred EEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998766 899999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCC
Q 013822 324 AAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARG 402 (436)
Q Consensus 324 ~al~~gvV~GGGa~e~~~s~~L~~~~~~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~g 402 (436)
+++++|||||||++|++++..|+++...++++|+|+++|++||+.|||+||+|||+|+.++ ++|++.. .++|||+.+|
T Consensus 405 ~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g 483 (544)
T PRK12850 405 AAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTG 483 (544)
T ss_pred HHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCC
Confidence 9999999999999999999999988445889999999999999999999999999999999 9998753 5799999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 403 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 403 ~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
++.||++.|||||+.||.++|++|+++|++||+|
T Consensus 484 ~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (544)
T PRK12850 484 EYGDMVEAGIIDPAKVTRTALQDAASIAALLITT 517 (544)
T ss_pred cccchhhccCcccHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999986
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.5e-92 Score=744.07 Aligned_cols=427 Identities=42% Similarity=0.605 Sum_probs=410.3
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAK 87 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~ 87 (436)
+||||||+++||++||++++++++ |+||+.|++||+.|++.++++|+++++|+++.+++.++|++|+++++.+++++++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~ 164 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAE 164 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHH
Confidence 799999999999999999999999 9999999999999999999999999999988888999999999889999999999
Q ss_pred HHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcC
Q 013822 88 VFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 167 (436)
Q Consensus 88 a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~ 167 (436)
|+.+++.++.+.++.+.+..+++++++|++|++||.+|||+++++.|+.+++||+|+++|+++++.+++.++++++.++|
T Consensus 165 Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~ 244 (541)
T PRK12851 165 AMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSG 244 (541)
T ss_pred HHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhC
Confidence 99999988888888766666789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE
Q 013822 168 QSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI 247 (436)
Q Consensus 168 ~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~ 247 (436)
+||||++++|+++++++|+.|++++.++|+|||+|+||+.|+++|+|||++|||++++++.+++++++++++||+|+.|+
T Consensus 245 ~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~ 324 (541)
T PRK12851 245 KPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVV 324 (541)
T ss_pred cCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999998777789999999999999999
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHH
Q 013822 248 ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ 323 (436)
Q Consensus 248 i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k 323 (436)
+++++|+|+++|+++++++.|+++++++++.+.+ ++|+||++||+|+++||+|||+|+++++|+||+++||+|++|
T Consensus 325 ~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~ 404 (541)
T PRK12851 325 VEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATR 404 (541)
T ss_pred EEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765 899999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCC
Q 013822 324 AAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARG 402 (436)
Q Consensus 324 ~al~~gvV~GGGa~e~~~s~~L~~~~~~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~g 402 (436)
+++++|||||||++|+++|+.|++++..++++|+|+++|++||+.|||+||+|||+|+.++ ++|++.. .++|||+.+|
T Consensus 405 ~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g 483 (541)
T PRK12851 405 AAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATN 483 (541)
T ss_pred HHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCC
Confidence 9999999999999999999999988766889999999999999999999999999999999 9998754 4799999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 403 NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 403 ~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+++||++.|||||+.||.++|++|+++|++||+|
T Consensus 484 ~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~i 517 (541)
T PRK12851 484 EYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTT 517 (541)
T ss_pred CccchhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999986
No 11
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.3e-91 Score=745.18 Aligned_cols=427 Identities=33% Similarity=0.523 Sum_probs=408.2
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAK 87 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~ 87 (436)
+||||||++|||++||++++++++ |+||+.|++||++|.+.+++.|++++.|+++ ++|.+||++|++++..|++++++
T Consensus 140 vGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liae 218 (600)
T PLN03167 140 AGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAE 218 (600)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHH
Confidence 799999999999999999999999 9999999999999999999999999999975 67999999999999999999999
Q ss_pred HHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcC
Q 013822 88 VFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 167 (436)
Q Consensus 88 a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~ 167 (436)
|+.++|.+|.|.+++|++..|++++++|++||+||.||||+++++.|+.+++||+|+++|++|++++++.++++.+.++|
T Consensus 219 Av~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g 298 (600)
T PLN03167 219 AMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGG 298 (600)
T ss_pred HHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhC
Confidence 99999998999999999988878999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE
Q 013822 168 QSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI 247 (436)
Q Consensus 168 ~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~ 247 (436)
+|+||++++|++++|++|+.|++++.++|++||+|+||++|+++|+|||.+|||++++++.+++++++++++||+|++|+
T Consensus 299 ~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~ 378 (600)
T PLN03167 299 YPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVV 378 (600)
T ss_pred cCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999998877789999999999999999
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHH
Q 013822 248 ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ 323 (436)
Q Consensus 248 i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k 323 (436)
+.+++++++++.++++.+++|+.+++..++.+.+ ++|++||++|+|++++|+|||+|+.+++|+||+++||||++|
T Consensus 379 ~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk 458 (600)
T PLN03167 379 LTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATK 458 (600)
T ss_pred EecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999989999999999999999987765 899999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHhcCC-ChhHH-HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCC
Q 013822 324 AAKEEGIVPGSGVALLYASKELDKLQTT-NSDQK-IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPA 400 (436)
Q Consensus 324 ~al~~gvV~GGGa~e~~~s~~L~~~~~~-~~~~~-~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~ 400 (436)
+|+++|+|||||++|+++++.|++++.. .+++| +|+++|++||+.|||+||+|||+|+.++ ++|+..+++++|||+.
T Consensus 459 ~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~ 538 (600)
T PLN03167 459 AAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAA 538 (600)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCC
Confidence 9999999999999999999999988653 45555 6799999999999999999999999999 9998656678999999
Q ss_pred CCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 401 RGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 401 ~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 539 ~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~i 574 (600)
T PLN03167 539 TGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTS 574 (600)
T ss_pred CCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-86 Score=666.38 Aligned_cols=424 Identities=41% Similarity=0.617 Sum_probs=411.7
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAK 87 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~ 87 (436)
.||||||+++|+.+|.+++++-+. |.+|.++.+|+.+|++.+++.|+++++||++++++.+||++|+|+|+..++++++
T Consensus 98 agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~ 177 (550)
T KOG0356|consen 98 AGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISD 177 (550)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHH
Confidence 599999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcC
Q 013822 88 VFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQG 167 (436)
Q Consensus 88 a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~ 167 (436)
|++++|.+|.|+|+.|++..|++++++||.||+||+||||+++++..+++|++|++|+++.||++++++.|.||...+..
T Consensus 178 a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~ 257 (550)
T KOG0356|consen 178 AMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKR 257 (550)
T ss_pred HHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCC-CCcCCCCCCCceeeeEE
Q 013822 168 QSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG-MNSTYFVPLKLGSCKRV 246 (436)
Q Consensus 168 ~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~-~~~~~~~~~~LG~a~~v 246 (436)
+||+|+++|++.++|.+|+.|++++.++++|||+|+||+.|++.+.|+|.+|||+++..+.+ ++++++++++||.++++
T Consensus 258 ~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~ev 337 (550)
T KOG0356|consen 258 RPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEV 337 (550)
T ss_pred CceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999977 78999999999999999
Q ss_pred EEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHH
Q 013822 247 IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAV 322 (436)
Q Consensus 247 ~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~ 322 (436)
.++.+.+.++.+-+++++++.||++++..++.+.+ ++|+||+++|+||+++|.+||.|+.|++|++++++|||||+
T Consensus 338 vvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat 417 (550)
T KOG0356|consen 338 VVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNAT 417 (550)
T ss_pred EEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999988887766 89999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCC
Q 013822 323 QAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPA 400 (436)
Q Consensus 323 k~al~~gvV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~ 400 (436)
++|+++|+|||||+++++|+..|+..... +.+++.|++++.+||..|.++|++|||.|+..+ .+++. .++|||..
T Consensus 418 ~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~~~gyda~ 494 (550)
T KOG0356|consen 418 RAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---DDYGYDAA 494 (550)
T ss_pred HHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---hhhhhhhh
Confidence 99999999999999999999999988764 778899999999999999999999999999999 88883 38999999
Q ss_pred CCccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013822 401 RGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 435 (436)
Q Consensus 401 ~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~ 435 (436)
+|+|+||++.||+||++|.+.++..|.++|+++++
T Consensus 495 ~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~t 529 (550)
T KOG0356|consen 495 KGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTT 529 (550)
T ss_pred cccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhh
Confidence 99999999999999999999999999999999875
No 13
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.5e-74 Score=599.94 Aligned_cols=367 Identities=19% Similarity=0.253 Sum_probs=330.6
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC---CHHHHHHHHHHhcCCc------
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT---TFEEIAQVGTTAANGD------ 78 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~---~~~~l~~vA~ts~~~~------ 78 (436)
+||||||+++||++||++++++++ |+||+.|++||++|.+.++++|++++.+++ +.+.+.+||++|++++
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~ 161 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLA 161 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHH
Confidence 799999999999999999999999 999999999999999999999999999997 7788999999999864
Q ss_pred hhHHHHHHHHHHhcccCC-c-----eeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEecccc
Q 013822 79 GEIGELIAKVFEKGWEND-L-----ITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI 150 (436)
Q Consensus 79 ~~~~~li~~a~~~vg~~~-~-----I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i 150 (436)
+.|++++++|+..+++++ . |++. +|++. +++++++|++|+++|.+|+|+ .+++||+|+++|+++
T Consensus 162 ~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~-~ds~~i~G~~~~~~~~~~~m~-------~~~~n~~Ill~~~~l 233 (484)
T cd03342 162 DQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSD-SDTKLIRGLVLDHGARHPDMP-------KRVENAYILTCNVSL 233 (484)
T ss_pred HHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCCh-hhceEEeeEEEecCCCCCCCC-------ccccCceEEEEeCCC
Confidence 789999999999998765 2 3333 46655 479999999999999999884 368899999999998
Q ss_pred CCHHH-HHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCC
Q 013822 151 SNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG 229 (436)
Q Consensus 151 ~~~~~-i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~ 229 (436)
+.++. +... .-.|+||++++|++.++++|..|+ |++||+ .++++|+|||++|||+++++
T Consensus 234 e~~~~~~~~~------~~~~lvi~~~~I~~~al~~l~~~~------I~av~~-----~~~~~l~~ia~~tGa~ii~~--- 293 (484)
T cd03342 234 EYEKTEVNSG------FFYSVVINQKGIDPPSLDMLAKEG------ILALRR-----AKRRNMERLTLACGGVAMNS--- 293 (484)
T ss_pred CCCccccCcE------EEEEEEEeCCCccHHHHHHHHHCC------CeEEEe-----CCHHHHHHHHHHhCCEEecc---
Confidence 86643 2111 114699999999999999999874 899996 45678999999999999996
Q ss_pred CCcCCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEEccCchh
Q 013822 230 MNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKA 306 (436)
Q Consensus 230 ~~~~~~~~~~LG~a~~v---~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~v~G~t~~ 306 (436)
++++++++||+|+.| ++++++|+|+++|+++. +|||+|||+|+.
T Consensus 294 --l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~-------------------------------~~tI~lrg~t~~ 340 (484)
T cd03342 294 --VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPK-------------------------------SCTILIKGPNDH 340 (484)
T ss_pred --cccCChhhCcccceEEEEEECCeEEEEEECCCCCc-------------------------------EEEEEEeCCCHH
Confidence 889999999999999 67888999999988763 599999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 013822 307 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI 384 (436)
Q Consensus 307 ~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i 384 (436)
+++|+||+++||++++|+++++| +|||||++|++++..|++++.. ++++|+++++|++||+.||++||+|||+|+.++
T Consensus 341 ~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~ 420 (484)
T cd03342 341 TITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQET 420 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999 9999999999999999998664 889999999999999999999999999999999
Q ss_pred -HHHHhc---CCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 385 -DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 385 -~~l~~~---~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
.+|+.. ++.++|||+.+|+++||++.|||||+.||+++|++|+++|++||||
T Consensus 421 l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~I 476 (484)
T cd03342 421 LVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLV 476 (484)
T ss_pred HHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhh
Confidence 989753 4567999999999999999999999999999999999999999997
No 14
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.2e-73 Score=600.00 Aligned_cols=373 Identities=21% Similarity=0.293 Sum_probs=338.1
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCCc------h
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT--TFEEIAQVGTTAANGD------G 79 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~--~~~~l~~vA~ts~~~~------~ 79 (436)
+||||||+++|+++|++++.++++ |+||+.|++||++|.+.++++|+++++|++ +.+.+.+||++|++++ +
T Consensus 85 ~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~ 164 (517)
T cd03343 85 VGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKD 164 (517)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHH
Confidence 799999999999999999999999 999999999999999999999999999986 6778999999999864 7
Q ss_pred hHHHHHHHHHHhcccCCc---------eee--ecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEecc
Q 013822 80 EIGELIAKVFEKGWENDL---------ITI--FDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT 148 (436)
Q Consensus 80 ~~~~li~~a~~~vg~~~~---------I~v--~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~ 148 (436)
.|++++++|+.+++.++. |.| .+|++.. ++++++|++|+++|.||+|+ ..++||+|+++++
T Consensus 165 ~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~-ds~lv~G~v~~~~~~~~~m~-------~~~~n~~Illl~~ 236 (517)
T cd03343 165 KLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVD-DTELIRGIVIDKEVVHPGMP-------KRVENAKIALLDA 236 (517)
T ss_pred HHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHH-HcceeeeEEEeccCCCCCCc-------cccCCCcEEEEec
Confidence 899999999999986543 777 4677776 69999999999999999884 3688999999998
Q ss_pred c-------------cCCHHHHHHH-----------HHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCC
Q 013822 149 K-------------ISNSNVIRQA-----------SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 204 (436)
Q Consensus 149 ~-------------i~~~~~i~~~-----------le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 204 (436)
+ +++++++.++ ++.+.+.|.|+||++++|++.++++|..+ ++++|++
T Consensus 237 ~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~~--- 307 (517)
T cd03343 237 PLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------GILAVRR--- 307 (517)
T ss_pred cccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEEe---
Confidence 8 4677776654 44788999999999999999999998754 4778885
Q ss_pred ccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHhhhccc
Q 013822 205 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 281 (436)
Q Consensus 205 ~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~i~---~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s 281 (436)
.++++|+|||++|||+++++ ++++++++||+|+.|++. +++|+++++|++++
T Consensus 308 --v~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~------------------ 362 (517)
T cd03343 308 --VKKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPK------------------ 362 (517)
T ss_pred --CCHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEEECCeEEEEEEcCCCCc------------------
Confidence 45788999999999999996 888999999999999755 78899999988764
Q ss_pred HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcC-CChhHHHHH
Q 013822 282 DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQT-TNSDQKIGV 359 (436)
Q Consensus 282 ~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~-~~~~~~~g~ 359 (436)
.+||+|||+|+.+++|+||+++||++++|+++++| ||||||++|++++..|++++. .++++|+++
T Consensus 363 -------------~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~ 429 (517)
T cd03343 363 -------------AVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAV 429 (517)
T ss_pred -------------eEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 38999999999999999999999999999999998 999999999999999998865 488999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013822 360 QIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 435 (436)
Q Consensus 360 ~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~ 435 (436)
++|++||+.||++||+|||+|+.++ .++++ .++.++|||+.+|++.||++.|||||+.||++++++|+++|++||+
T Consensus 430 ~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 509 (517)
T cd03343 430 EAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILR 509 (517)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 98974 3457899999999999999999999999999999999999999998
Q ss_pred C
Q 013822 436 I 436 (436)
Q Consensus 436 i 436 (436)
|
T Consensus 510 i 510 (517)
T cd03343 510 I 510 (517)
T ss_pred h
Confidence 6
No 15
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-75 Score=607.74 Aligned_cols=405 Identities=33% Similarity=0.464 Sum_probs=356.2
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHH-----HHHHHHHHhcCCchhHH
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFE-----EIAQVGTTAANGDGEIG 82 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~-----~l~~vA~ts~~~~~~~~ 82 (436)
+||||||++|||++||++|++++. |+||+.|++||++|.+.++++|+++++|+++.+ ...++++.++++++.|+
T Consensus 81 ~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~ 160 (524)
T COG0459 81 AGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIG 160 (524)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccChHHHH
Confidence 799999999999999999999999 999999999999999999999999999998654 44555556666678999
Q ss_pred HHHHHHHHhccc-----CCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHH
Q 013822 83 ELIAKVFEKGWE-----NDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIR 157 (436)
Q Consensus 83 ~li~~a~~~vg~-----~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~ 157 (436)
+++++|+.+++. ++.+.++..++..+++++++||+||+||.+|||.++ ..++||+|+++|++|+..+..+
T Consensus 161 ~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l 235 (524)
T COG0459 161 ELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEIKKPEL 235 (524)
T ss_pred HHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCc-----cccccceEEEEccccccccccC
Confidence 999999999998 777888877777788999999999999999998654 5788999999999999998888
Q ss_pred HHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCC
Q 013822 158 QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVP 237 (436)
Q Consensus 158 ~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~ 237 (436)
+ ++...+.+.||++++++..+++|..++.|.+++.+++++|+.|||++.++.+|+|++++||+++.+++.+ + ..
T Consensus 236 ~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~---~--~l 309 (524)
T COG0459 236 P-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG---E--RL 309 (524)
T ss_pred c-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH---H--HH
Confidence 8 8888888899999999999999999999999999999999999999999999999999999999887532 1 34
Q ss_pred CCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhc-cc----HHHHHHHhhhcCCeEEEEEccCchhHHHHHH
Q 013822 238 LKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLS-TS----DKLKDRLAKLSGGYAVLKVCGHGKAEVREKK 312 (436)
Q Consensus 238 ~~LG~a~~v~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~-~s----~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~ 312 (436)
..+|.|..+.+.++.+....|.+. ..+++.. .+ .++++|.++ .|++|||++||+|+.+++|+|
T Consensus 310 ~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~e 377 (524)
T COG0459 310 AKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKE 377 (524)
T ss_pred HHccCceEEeecccCceeecCccc-----------cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccHhHHHHHH
Confidence 556777777766666655554320 1122222 11 677888888 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhc-CCCh-hHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHH
Q 013822 313 LKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQ-TTNS-DQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLL 388 (436)
Q Consensus 313 ~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~-~~~~-~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~ 388 (436)
|++|||||++|+++++| +|||||++|++++..|++++ ...+ ++|+|+++|++||+.||++||+|||+||.++ .+|+
T Consensus 378 r~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~ 457 (524)
T COG0459 378 RRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLR 457 (524)
T ss_pred HHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999 99999999999999999883 3344 9999999999999999999999999999999 9999
Q ss_pred hcCC-CCeeEeCCCCcc-ccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 389 EQDS-SDLGYNPARGNY-VDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 389 ~~~~-~~~G~d~~~g~~-~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+... +++|||+.+|++ .||++.|||||+.||+++|++|+++|+++|+|
T Consensus 458 ~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~ 507 (524)
T COG0459 458 SAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTI 507 (524)
T ss_pred hcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 8654 459999999999 88999999999999999999999999999986
No 16
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.2e-73 Score=597.53 Aligned_cols=373 Identities=19% Similarity=0.242 Sum_probs=330.0
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccC---CCHHHHHHHHHHhcCC------c
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKI---TTFEEIAQVGTTAANG------D 78 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i---~~~~~l~~vA~ts~~~------~ 78 (436)
+||||||+++||++||++|.++++ |+||+.|++||+.|.+.++++|++++.++ .+.+.|.++|++++++ +
T Consensus 86 ~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~ 165 (531)
T TIGR02347 86 TGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLA 165 (531)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhH
Confidence 799999999999999999999999 99999999999999999999999999764 4677899999999864 7
Q ss_pred hhHHHHHHHHHHhcccCCc-e-----ee-e-cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEecccc
Q 013822 79 GEIGELIAKVFEKGWENDL-I-----TI-F-DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI 150 (436)
Q Consensus 79 ~~~~~li~~a~~~vg~~~~-I-----~v-~-~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i 150 (436)
+.|++++++|+..++.++. + .+ + .|++ .+++++++|++|+++|.+|+|++ +++||+|+++|+++
T Consensus 166 ~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s-~~ds~~v~Giv~~~~~~~~~~~~-------~~~n~~Ill~~~~l 237 (531)
T TIGR02347 166 DQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKS-ATDTTLIRGLVLDHGARHPDMPR-------RVKNAYILTCNVSL 237 (531)
T ss_pred HHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCC-ccccEEEeeEEEecCcCCCCCce-------eccCceEEEEeCCC
Confidence 7899999999999987653 3 33 2 3444 45799999999999999999853 78999999999876
Q ss_pred CCH-------------HH-----------HHHHHHHHHHcCC-------C---EEEEecCcchhhHHHHHHhccCCCccE
Q 013822 151 SNS-------------NV-----------IRQASLPCMMQGQ-------S---LLVVAEDVENEVLGDIATDFTCTTEKV 196 (436)
Q Consensus 151 ~~~-------------~~-----------i~~~le~i~~~~~-------~---lvii~~~i~~~al~~l~~n~~~~~~~i 196 (436)
+.. ++ +...++.+.+.|+ + +|+++++|++.++++|..+ +|
T Consensus 238 e~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I 311 (531)
T TIGR02347 238 EYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GI 311 (531)
T ss_pred CCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------Cc
Confidence 532 22 3345666666552 3 8888999999999999875 48
Q ss_pred EEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHHH
Q 013822 197 CIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQLR 273 (436)
Q Consensus 197 ~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v---~i~~~~~~~~~~~~~~~~i~~r~~~l~ 273 (436)
+++|+. ++++|+|||++|||+++++ ++++++++||+|+.| ++++++|++|++|+++.
T Consensus 312 ~~i~rv-----~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~---------- 371 (531)
T TIGR02347 312 MALRRA-----KRRNMERLTLACGGEALNS-----VEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPK---------- 371 (531)
T ss_pred eEEccC-----CHHHHHHHHHHhCCEEecc-----cccCCccccccceEEEEEEECCeEEEEEEcCCCCC----------
Confidence 899854 4568999999999999986 889999999999999 68889999999988763
Q ss_pred HHhhhcccHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-
Q 013822 274 STIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT- 351 (436)
Q Consensus 274 ~~l~~~~s~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~- 351 (436)
+|||+|||+|+.+++|+||+++||+|++|+++++| +|||||++|+++|..|++++..
T Consensus 372 ---------------------~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~ 430 (531)
T TIGR02347 372 ---------------------SCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSV 430 (531)
T ss_pred ---------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcC
Confidence 59999999999999999999999999999999998 9999999999999999988664
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCcccccccHHHHHHHHH
Q 013822 352 NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKAT 427 (436)
Q Consensus 352 ~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~ 427 (436)
++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|++.||++.|||||+.||+++|++|+
T Consensus 431 ~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~ 510 (531)
T TIGR02347 431 KGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSAT 510 (531)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHH
Confidence 889999999999999999999999999999999 988763 3467999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 013822 428 SMISLKNAI 436 (436)
Q Consensus 428 ~~a~~iL~i 436 (436)
++|++||||
T Consensus 511 e~a~~iLrI 519 (531)
T TIGR02347 511 VIASQLLLV 519 (531)
T ss_pred HHHHHHHhH
Confidence 999999997
No 17
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.1e-72 Score=596.55 Aligned_cols=373 Identities=20% Similarity=0.278 Sum_probs=336.2
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCC--HHHHHHHHHHhcCCc-------
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT--FEEIAQVGTTAANGD------- 78 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~--~~~l~~vA~ts~~~~------- 78 (436)
+||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++|+++++|++. .+.|.++|+||++++
T Consensus 86 ~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~ 165 (519)
T TIGR02339 86 VGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTK 165 (519)
T ss_pred hCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhH
Confidence 799999999999999999999999 9999999999999999999999999999863 578999999999754
Q ss_pred hhHHHHHHHHHHhccc---CCc-------eee--ecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEe
Q 013822 79 GEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIY 146 (436)
Q Consensus 79 ~~~~~li~~a~~~vg~---~~~-------I~v--~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~ 146 (436)
+.|++++++|+.+++. +|. |+| .+|++.. ++++++|++|+++|.||.|+ ..++||+|+++
T Consensus 166 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~-ds~lv~G~vi~~~~~~~~m~-------~~i~n~kIlll 237 (519)
T TIGR02339 166 DKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSID-DTELVEGIVVDKEPVHPGMP-------KRVKNAKIALL 237 (519)
T ss_pred HHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChh-cceeEeeEEEecCCCCCCCc-------cccCCCcEEEE
Confidence 6899999999999984 453 445 3677775 79999999999999998653 47899999999
Q ss_pred ccc-------------cCCHHHHHHHHH-----------HHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeC
Q 013822 147 DTK-------------ISNSNVIRQASL-----------PCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAA 202 (436)
Q Consensus 147 d~~-------------i~~~~~i~~~le-----------~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~ 202 (436)
+++ +++++++.++++ .+++.|.|+|+++++|++.++++|..+ +|++|++
T Consensus 238 ~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~~- 310 (519)
T TIGR02339 238 DAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVRR- 310 (519)
T ss_pred eccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEec-
Confidence 987 677777777766 788999999999999999999998744 4678874
Q ss_pred CCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHhhhc
Q 013822 203 GLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQLRSTIKLS 279 (436)
Q Consensus 203 ~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~i~~---~~~~~~~~~~~~~~i~~r~~~l~~~l~~~ 279 (436)
.++++|+|||++|||+++++ ++++++++||+|+.|++.+ ++|++|++|+++.
T Consensus 311 ----v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~---------------- 365 (519)
T TIGR02339 311 ----VKKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPK---------------- 365 (519)
T ss_pred ----CCHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEEEEECCeEEEEEEcCCCCC----------------
Confidence 45788999999999999996 7888888999999997654 8899999987764
Q ss_pred ccHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcC-CChhHHH
Q 013822 280 TSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQT-TNSDQKI 357 (436)
Q Consensus 280 ~s~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~-~~~~~~~ 357 (436)
.+||+|||+|+.+++|.||+++||+|++|+++++| +|||||++|+++|+.|++++. .++++|+
T Consensus 366 ---------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~ 430 (519)
T TIGR02339 366 ---------------AVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQL 430 (519)
T ss_pred ---------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHH
Confidence 48999999999999999999999999999999998 999999999999999998865 4889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHH
Q 013822 358 GVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLK 433 (436)
Q Consensus 358 g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~i 433 (436)
++++|++||+.||++||+|||+|+.++ .+|+. .++.++|||+.+|++.||++.|||||+.||++++++|+++|++|
T Consensus 431 ~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 510 (519)
T TIGR02339 431 AIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMI 510 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 98974 34578999999999999999999999999999999999999999
Q ss_pred hcC
Q 013822 434 NAI 436 (436)
Q Consensus 434 L~i 436 (436)
|+|
T Consensus 511 L~i 513 (519)
T TIGR02339 511 LRI 513 (519)
T ss_pred HhH
Confidence 986
No 18
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.7e-72 Score=592.60 Aligned_cols=378 Identities=18% Similarity=0.225 Sum_probs=333.4
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHh-hcccCC--CHHHHHHHHHHhcC-----C-c
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDC-QARKIT--TFEEIAQVGTTAAN-----G-D 78 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~-~s~~i~--~~~~l~~vA~ts~~-----~-~ 78 (436)
+||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++|++ +++|++ +.+.|.++|+|+++ + .
T Consensus 78 ~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~ 157 (527)
T cd03335 78 VGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADS 157 (527)
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhH
Confidence 799999999999999999999999 999999999999999999999996 899987 77889999999987 2 4
Q ss_pred hhHHHHHHHHHHhcc---cCCc-------eee--ecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEe
Q 013822 79 GEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIY 146 (436)
Q Consensus 79 ~~~~~li~~a~~~vg---~~~~-------I~v--~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~ 146 (436)
+.|++++++|+..++ .+|. |.+ ..|++.. ++++++|++|+++|.||.|+ ..++||+|+++
T Consensus 158 ~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~-~s~li~Givi~~~~~~~~m~-------~~i~n~kIlll 229 (527)
T cd03335 158 DFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAK-ESYLVNGYALNCTRASQGMP-------TRVKNAKIACL 229 (527)
T ss_pred HHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChh-hcceeeeEEEecccCCCCCc-------ccccCCcEEEE
Confidence 789999999999985 2232 333 2576765 79999999999999998653 47899999999
Q ss_pred ccccCC-------------HH-----------HHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeC
Q 013822 147 DTKISN-------------SN-----------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAA 202 (436)
Q Consensus 147 d~~i~~-------------~~-----------~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~ 202 (436)
+++|+. ++ .+.++++.+.+.|.|+||++++|++.++++|..+ +|+++++
T Consensus 230 ~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~~- 302 (527)
T cd03335 230 DFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVRR- 302 (527)
T ss_pred eccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEEe-
Confidence 987653 12 2346678888999999999999999999999876 4788884
Q ss_pred CCccchhhHHHHHHHHhCCeEeeCCCCC-CcCCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhh
Q 013822 203 GLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKL 278 (436)
Q Consensus 203 ~~~~~r~~~le~la~~tG~~~~s~~~~~-~~~~~~~~~LG~a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~ 278 (436)
.++++|+|||++|||+++++..++ ..+++++++||+|+.|+ +++++|++|++|+++
T Consensus 303 ----v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~---------------- 362 (527)
T cd03335 303 ----VKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKR---------------- 362 (527)
T ss_pred ----CCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCC----------------
Confidence 467889999999999999985444 22456677899999998 788899999998764
Q ss_pred cccHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHH
Q 013822 279 STSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQK 356 (436)
Q Consensus 279 ~~s~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~ 356 (436)
++|||+|||+|+.+++|.||+++||+|++++++++| +|||||++|++++..|++++.. ++++|
T Consensus 363 ---------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~ 427 (527)
T cd03335 363 ---------------SSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ 427 (527)
T ss_pred ---------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHH
Confidence 469999999999999999999999999999999998 9999999999999999988664 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C--------CCCeeEeCCCCccccccccCcccccccHHHHHH
Q 013822 357 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D--------SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFA 424 (436)
Q Consensus 357 ~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~--------~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~ 424 (436)
+++++|++||+.||++||+|||+|+.++ .+|++. + ++++|||+.+|++.||++.|||||+.||.++|+
T Consensus 428 ~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~ 507 (527)
T cd03335 428 LAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLK 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHH
Confidence 9999999999999999999999999999 988762 2 457999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 013822 425 KATSMISLKNAI 436 (436)
Q Consensus 425 ~A~~~a~~iL~i 436 (436)
+|+++|++||||
T Consensus 508 ~A~e~a~~iLrI 519 (527)
T cd03335 508 FATEAAITILRI 519 (527)
T ss_pred HHHHHHHHHHhh
Confidence 999999999997
No 19
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-71 Score=590.20 Aligned_cols=378 Identities=18% Similarity=0.219 Sum_probs=334.1
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhh-cccCC--CHHHHHHHHHHhcC------Cc
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQ-ARKIT--TFEEIAQVGTTAAN------GD 78 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~-s~~i~--~~~~l~~vA~ts~~------~~ 78 (436)
+||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++|+++ ++|++ +.+++.++|+++++ ++
T Consensus 82 ~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 82 VGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhH
Confidence 799999999999999999999999 9999999999999999999999985 88987 67889999999987 57
Q ss_pred hhHHHHHHHHHHhcc---cCCc-------eee--ecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEe
Q 013822 79 GEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIY 146 (436)
Q Consensus 79 ~~~~~li~~a~~~vg---~~~~-------I~v--~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~ 146 (436)
+.|++++++|+..++ .+|. |.+ ..|++. +++++++|++|+++|.||.| +..++||+|+++
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~-~~s~~i~Gi~i~~~~~~~~m-------~~~~~n~kIli~ 233 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSA-RESYLVKGYALNCTRASQQM-------PKRIKKAKIACL 233 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCc-cccEEEEEEEEecccCCCCC-------cceecCCcEEEE
Confidence 889999999999986 3342 333 367777 57999999999999999865 347899999999
Q ss_pred ccccCCHH------------------------HHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeC
Q 013822 147 DTKISNSN------------------------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAA 202 (436)
Q Consensus 147 d~~i~~~~------------------------~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~ 202 (436)
+++|+..+ .+.+.++.+++.|.++|+++++|++.++++|+.++ ++++++
T Consensus 234 ~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~r- 306 (536)
T TIGR02340 234 DFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGVRR- 306 (536)
T ss_pred ecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEec-
Confidence 98875332 23456777888999999999999999999998764 788885
Q ss_pred CCccchhhHHHHHHHHhCCeEeeCCCCC-CcCCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhh
Q 013822 203 GLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKL 278 (436)
Q Consensus 203 ~~~~~r~~~le~la~~tG~~~~s~~~~~-~~~~~~~~~LG~a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~ 278 (436)
.++++|+|||++|||+++++..++ ..+++++++||+|+.|+ +++++|++|++++++.
T Consensus 307 ----v~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~--------------- 367 (536)
T TIGR02340 307 ----CKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRK--------------- 367 (536)
T ss_pred ----CCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCC---------------
Confidence 346789999999999999986554 33557778899999998 8889999999987663
Q ss_pred cccHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcC-CChhHH
Q 013822 279 STSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQT-TNSDQK 356 (436)
Q Consensus 279 ~~s~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~-~~~~~~ 356 (436)
+|||+|||+|+.+++|+||+++||+|++|+++++| +|||||++|++++..|++++. .++++|
T Consensus 368 ----------------~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~ 431 (536)
T TIGR02340 368 ----------------SASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ 431 (536)
T ss_pred ----------------EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhH
Confidence 59999999999999999999999999999999999 999999999999999998865 488999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C--------CCCeeEeCCCCccccccccCcccccccHHHHHH
Q 013822 357 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D--------SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFA 424 (436)
Q Consensus 357 ~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~--------~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~ 424 (436)
+++++|++||+.||++||+|||+||.++ .+|++. + +.++|||+.+|++.||++.|||||+.||.++|+
T Consensus 432 ~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~ 511 (536)
T TIGR02340 432 LAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLK 511 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHH
Confidence 9999999999999999999999999999 888761 1 347999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 013822 425 KATSMISLKNAI 436 (436)
Q Consensus 425 ~A~~~a~~iL~i 436 (436)
.|+++|++||+|
T Consensus 512 ~A~e~a~~iL~I 523 (536)
T TIGR02340 512 FATEAAITILRI 523 (536)
T ss_pred HHHHHHHHHHhh
Confidence 999999999997
No 20
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-71 Score=588.32 Aligned_cols=379 Identities=19% Similarity=0.255 Sum_probs=327.7
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCC------ch
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT--TFEEIAQVGTTAANG------DG 79 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~--~~~~l~~vA~ts~~~------~~ 79 (436)
+||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++|+++++|++ +.+.|.++|+||+++ .+
T Consensus 79 ~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~ 158 (517)
T TIGR02342 79 AGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSS 158 (517)
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHH
Confidence 799999999999999999999999 999999999999999999999999999987 678899999999973 33
Q ss_pred hHHHHHHHHHHhccc---CCc-----eeee--cCCCccceeEEeeeEEEecccccc-ccccccccceeeecCceEEEecc
Q 013822 80 EIGELIAKVFEKGWE---NDL-----ITIF--DRKALYNELNFVKGMKLEWGLKSP-YFFTHKNKKECVLDGALVLIYDT 148 (436)
Q Consensus 80 ~~~~li~~a~~~vg~---~~~-----I~v~--~g~~~~d~~~~i~G~~~d~g~~~p-~~~~~~~~~~~~l~~p~Il~~d~ 148 (436)
.|++++++|+..++. ++. |++. .|++. +++++++|++|+++|.++ .|+ ..++||+|+++++
T Consensus 159 ~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~-~ds~li~Givl~k~~~~~~~mp-------k~i~n~kI~ll~~ 230 (517)
T TIGR02342 159 LLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTI-DDTELIEGLVFTQKASRSAGGP-------TRIEKAKIGLIQF 230 (517)
T ss_pred HHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCCh-hhcEEEeeEEEeccccccCCCC-------ccccCCcEEEEec
Confidence 569999999999975 233 3443 45554 579999999999999983 332 2455666666654
Q ss_pred ccC-------------C-----------HHHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCC
Q 013822 149 KIS-------------N-----------SNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 204 (436)
Q Consensus 149 ~i~-------------~-----------~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 204 (436)
.++ + .+++.++++.+++.|+|+|+++++|++++++.++.|.+.+ .+|++|++
T Consensus 231 ~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~~--- 306 (517)
T TIGR02342 231 QISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVKD--- 306 (517)
T ss_pred CCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEec---
Confidence 332 2 2356778999999999999999999777777776666655 68999984
Q ss_pred ccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc
Q 013822 205 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 281 (436)
Q Consensus 205 ~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s 281 (436)
.++++|+|||++|||+++++ ++++++++||+|+.|+ ++++.++++.+|+++
T Consensus 307 --v~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~------------------- 360 (517)
T TIGR02342 307 --IEREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVTTDGGKIIKITGIQNA------------------- 360 (517)
T ss_pred --CCHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEEECCeEEEEEEccCCC-------------------
Confidence 56788999999999999996 7888899999999987 345567888887653
Q ss_pred HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHHhcCC-ChhHHHHH
Q 013822 282 DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGV 359 (436)
Q Consensus 282 ~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~-gvV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~ 359 (436)
|++|||+|||+|+.+++|+||+++||++++|+++++ ++|||||++|+++|+.|++++.. ++++|+++
T Consensus 361 -----------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i 429 (517)
T TIGR02342 361 -----------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCV 429 (517)
T ss_pred -----------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 357999999999999999999999999999999997 69999999999999999988664 88999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013822 360 QIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 435 (436)
Q Consensus 360 ~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~ 435 (436)
++|++||+.||++||+|||+||.++ .+|++. ++.++|||+.+|+++||++.|||||+.||++++++|+++|++||+
T Consensus 430 ~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~ 509 (517)
T TIGR02342 430 RAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILK 509 (517)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 999762 456899999999999999999999999999999999999999999
Q ss_pred C
Q 013822 436 I 436 (436)
Q Consensus 436 i 436 (436)
|
T Consensus 510 i 510 (517)
T TIGR02342 510 I 510 (517)
T ss_pred c
Confidence 7
No 21
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.2e-72 Score=590.13 Aligned_cols=380 Identities=19% Similarity=0.221 Sum_probs=329.5
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcC------Cch
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT--TFEEIAQVGTTAAN------GDG 79 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~--~~~~l~~vA~ts~~------~~~ 79 (436)
+||||||+++|+++|++++.++++ |+||+.|++||+.|.+.++++|+++++|++ +.++|.++|++|++ +++
T Consensus 78 ~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~ 157 (515)
T cd03338 78 AGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSS 157 (515)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHH
Confidence 799999999999999999999999 999999999999999999999999999986 67889999999998 457
Q ss_pred hHHHHHHHHHHhcccCCc----------eeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccc
Q 013822 80 EIGELIAKVFEKGWENDL----------ITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK 149 (436)
Q Consensus 80 ~~~~li~~a~~~vg~~~~----------I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~ 149 (436)
.|++++++|+.+++.++. |....|++.. ++++++|++|+++|.||++. +..++||+++++++.
T Consensus 158 ~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~-ds~lv~Giv~~k~~~~~~~~------p~~i~n~ki~ll~~~ 230 (515)
T cd03338 158 LLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIE-DTELVDGLVFTQKASKKAGG------PTRIEKAKIGLIQFC 230 (515)
T ss_pred HHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChh-hceeeeeEEEeccccCcCCC------CccccCCcEEEEecc
Confidence 899999999999987652 3334677776 47999999999999997531 112445555444332
Q ss_pred c-------------------CCH-----HHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCc
Q 013822 150 I-------------------SNS-----NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLA 205 (436)
Q Consensus 150 i-------------------~~~-----~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~ 205 (436)
+ ++. +++.++++.+++.|.||||++++|++++++.++.|.+.+ .+|++|+
T Consensus 231 le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~----- 304 (515)
T cd03338 231 LSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK----- 304 (515)
T ss_pred ccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----
Confidence 2 222 457788999999999999999999766666666665554 6899998
Q ss_pred cchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHhhhcccH
Q 013822 206 EDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD 282 (436)
Q Consensus 206 ~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~i~---~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~ 282 (436)
++++++|+|||++|||+++++ ++++++++||+|+.|++. +++++++.+|+++
T Consensus 305 ~~~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~-------------------- 359 (515)
T cd03338 305 DIEREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNP-------------------- 359 (515)
T ss_pred cCCHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEECCeEEEEEEecCCC--------------------
Confidence 456788999999999999996 888888999999999754 4568899887642
Q ss_pred HHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcC-CChhHHHHHH
Q 013822 283 KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQ 360 (436)
Q Consensus 283 ~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~-~~~~~~~g~~ 360 (436)
++.|||+|||+|+.+++|+||+++||+|++|+++++| +|||||++|+++++.|++++. .++++|++++
T Consensus 360 ----------~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~ 429 (515)
T cd03338 360 ----------GKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVR 429 (515)
T ss_pred ----------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 3579999999999999999999999999999999998 999999999999999998865 4789999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 361 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 361 ~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+|++||+.||++||+|||+||.++ .+|++. ++.++|||+.+|++.||++.|||||+.||++++++|+++|++||+|
T Consensus 430 ~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~I 509 (515)
T cd03338 430 AFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKI 509 (515)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999 999762 4568999999999999999999999999999999999999999997
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.4e-71 Score=587.07 Aligned_cols=373 Identities=20% Similarity=0.234 Sum_probs=326.8
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC----CHHHHHHHHHHhcCC------
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT----TFEEIAQVGTTAANG------ 77 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~----~~~~l~~vA~ts~~~------ 77 (436)
+||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++|+++++|++ +.+.|.++|++|+++
T Consensus 93 ~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~ 172 (526)
T cd03339 93 IGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRC 172 (526)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhH
Confidence 799999999999999999999999 999999999999999999999999999985 457799999999874
Q ss_pred chhHHHHHHHHHHhcccC-------Cceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEecc
Q 013822 78 DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT 148 (436)
Q Consensus 78 ~~~~~~li~~a~~~vg~~-------~~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~ 148 (436)
.+.|++++++|+..+... ..|.|+ +|++.. ++++++|++|+++|.||+|++. ++||+|++.++
T Consensus 173 ~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-dS~~v~Givi~~~~~~~~m~~~-------~~n~kI~ll~~ 244 (526)
T cd03339 173 HRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLE-DTKLVKGIVIDKDFSHPQMPKE-------VKDAKIAILTC 244 (526)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHH-HcceeeeEEEecccCCCCCCce-------ecCCCEEEEEe
Confidence 346888889998877431 134554 677775 6999999999999999999763 34555555543
Q ss_pred -----------c--cCCHHH-----------HHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCC
Q 013822 149 -----------K--ISNSNV-----------IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 204 (436)
Q Consensus 149 -----------~--i~~~~~-----------i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 204 (436)
+ ++++++ +.++++.+.+.|+|+|+++++|++.++++|..|+ +.+||+++
T Consensus 245 ~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~v~- 317 (526)
T cd03339 245 PFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRWVG- 317 (526)
T ss_pred cccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEeCC-
Confidence 3 556655 6778999999999999999999999999998775 67999753
Q ss_pred ccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Ee--cceEEEEcCCCChhhHHHHHHHHHHHhhhc
Q 013822 205 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT--MDNVVIIGGSGELVDIQERCEQLRSTIKLS 279 (436)
Q Consensus 205 ~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~---i~--~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~ 279 (436)
+++|+|||++|||+++++ ++++++++||+|+.|+ ++ .++++|+++|+++.
T Consensus 318 ----~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~---------------- 372 (526)
T cd03339 318 ----GVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSK---------------- 372 (526)
T ss_pred ----HHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCC----------------
Confidence 356999999999999996 8899999999999986 33 35789999988753
Q ss_pred ccHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcC-CChhHHH
Q 013822 280 TSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQT-TNSDQKI 357 (436)
Q Consensus 280 ~s~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~-~~~~~~~ 357 (436)
.|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|+++|+.|++++. .++++|+
T Consensus 373 ---------------~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~ 437 (526)
T cd03339 373 ---------------AVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQY 437 (526)
T ss_pred ---------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHH
Confidence 59999999999999999999999999999999997 999999999999999998865 4889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHH
Q 013822 358 GVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE----QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 432 (436)
Q Consensus 358 g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~----~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~ 432 (436)
++++|++||+.||++||+|||+|+.++ .+|+. .++.++|||+.+|++.||++.|||||+.||+++|++|+++|++
T Consensus 438 ~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~ 517 (526)
T cd03339 438 AMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKM 517 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 98874 2356799999999999999999999999999999999999999
Q ss_pred HhcC
Q 013822 433 KNAI 436 (436)
Q Consensus 433 iL~i 436 (436)
||+|
T Consensus 518 iL~i 521 (526)
T cd03339 518 ILKI 521 (526)
T ss_pred Hhhh
Confidence 9997
No 23
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.4e-71 Score=583.60 Aligned_cols=373 Identities=20% Similarity=0.219 Sum_probs=325.7
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC----CHHHHHHHHHHhcCC------
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT----TFEEIAQVGTTAANG------ 77 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~----~~~~l~~vA~ts~~~------ 77 (436)
+||||||+++||++||+++.++++ |+||+.|++||+.|++.++++|+++++|++ +.+.|.++|++++++
T Consensus 97 ~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~ 176 (532)
T TIGR02343 97 IGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKC 176 (532)
T ss_pred hcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHH
Confidence 799999999999999999999999 999999999999999999999999999875 256799999998873
Q ss_pred chhHHHHHHHHHHhcccC--C-----ceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEecc
Q 013822 78 DGEIGELIAKVFEKGWEN--D-----LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT 148 (436)
Q Consensus 78 ~~~~~~li~~a~~~vg~~--~-----~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~ 148 (436)
.+.|++++++|+..+... + .|.+. +|++.. ++++++|++|+++|.||+|++. ++||+|++.++
T Consensus 177 ~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-ds~~v~Gi~i~~~~~~~~m~~~-------~~n~kI~l~~~ 248 (532)
T TIGR02343 177 HRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLE-DTKLIKGIIIDKDFSHPQMPKE-------VKDAKIAILTC 248 (532)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcc-cceeEeeEEEecCcCCCCCCee-------ecCCcEEEEEe
Confidence 335788888888877431 1 34443 677776 4799999999999999998763 44555555543
Q ss_pred -----------c--cCCHHHH-----------HHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCC
Q 013822 149 -----------K--ISNSNVI-----------RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 204 (436)
Q Consensus 149 -----------~--i~~~~~i-----------~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 204 (436)
+ +++++++ .++++.+.+.|+||||++++|++.++++|..|+ +.+||+++
T Consensus 249 ~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~~~~- 321 (532)
T TIGR02343 249 PFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVRWVG- 321 (532)
T ss_pred eccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEEcCC-
Confidence 3 5666655 778999999999999999999999999999875 67898653
Q ss_pred ccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---Eec--ceEEEEcCCCChhhHHHHHHHHHHHhhhc
Q 013822 205 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM--DNVVIIGGSGELVDIQERCEQLRSTIKLS 279 (436)
Q Consensus 205 ~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~---i~~--~~~~~~~~~~~~~~i~~r~~~l~~~l~~~ 279 (436)
+++|+|||++|||+++++ ++++++++||+|+.|+ ++. ++++++++|++++
T Consensus 322 ----~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~---------------- 376 (532)
T TIGR02343 322 ----GHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSK---------------- 376 (532)
T ss_pred ----HHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEEecCCcceEEEEECCCCCC----------------
Confidence 356999999999999996 8899999999999986 333 4789999998764
Q ss_pred ccHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHHhcCC-ChhHHH
Q 013822 280 TSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKI 357 (436)
Q Consensus 280 ~s~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~-gvV~GGGa~e~~~s~~L~~~~~~-~~~~~~ 357 (436)
+|||+|||+|+.+++|+||+++||++++|+++++ ++|||||++|+++|++|++++.. ++++|+
T Consensus 377 ---------------~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~ 441 (532)
T TIGR02343 377 ---------------AVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQY 441 (532)
T ss_pred ---------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHH
Confidence 5899999999999999999999999999999998 59999999999999999988664 888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHH
Q 013822 358 GVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE----QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 432 (436)
Q Consensus 358 g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~----~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~ 432 (436)
++++|++||+.||++||+|||+|+.++ .++++ .++.++|||+.+|+++||++.|||||+.||+++|++|+++|++
T Consensus 442 ~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~ 521 (532)
T TIGR02343 442 AIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRM 521 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 88875 1256799999999999999999999999999999999999999
Q ss_pred HhcC
Q 013822 433 KNAI 436 (436)
Q Consensus 433 iL~i 436 (436)
||+|
T Consensus 522 iL~i 525 (532)
T TIGR02343 522 ILKI 525 (532)
T ss_pred HHhH
Confidence 9986
No 24
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-70 Score=580.76 Aligned_cols=376 Identities=17% Similarity=0.180 Sum_probs=336.1
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCC------HHHHHHHHHHhcC-----
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT------FEEIAQVGTTAAN----- 76 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~------~~~l~~vA~ts~~----- 76 (436)
+||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++|+++++|+++ .+.|.++|+++++
T Consensus 86 ~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~ 165 (522)
T cd03340 86 VGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIA 165 (522)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcch
Confidence 799999999999999999999999 9999999999999999999999999999864 4569999999976
Q ss_pred -CchhHHHHHHHHHHhcccCC---ceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEecccc
Q 013822 77 -GDGEIGELIAKVFEKGWEND---LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI 150 (436)
Q Consensus 77 -~~~~~~~li~~a~~~vg~~~---~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i 150 (436)
+++.|++++++|+..++.++ .|.+. +|++.. ++++++|++|+++|.+|+|.+.++ .++||+|+++++++
T Consensus 166 ~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~-ds~lv~Giv~~k~~~~~~~~~~~~----~~~n~kIll~~~~L 240 (522)
T cd03340 166 SEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE-DSQLVNGVAFKKTFSYAGFEQQPK----KFKNPKILLLNVEL 240 (522)
T ss_pred hHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChh-hceeeeeEEEecccCccccccCCc----cccCCeEEEEeCCC
Confidence 46789999999999998765 45554 566665 599999999999999998865443 58999999999874
Q ss_pred -------------CCHHH-----------HHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCcc
Q 013822 151 -------------SNSNV-----------IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAE 206 (436)
Q Consensus 151 -------------~~~~~-----------i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~ 206 (436)
+++++ +.+.++.+.+.|.+++++++.|++.++++|..++ |+++++.
T Consensus 241 e~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~~v---- 310 (522)
T cd03340 241 ELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAGRV---- 310 (522)
T ss_pred CCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEEeC----
Confidence 34433 5566778889999999999999999999998764 6788754
Q ss_pred chhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHH
Q 013822 207 DRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDK 283 (436)
Q Consensus 207 ~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~ 283 (436)
++++|+|||++|||+++++ ++++++++||+|+.|+ ++++++++|.+|..++
T Consensus 311 -~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~-------------------- 364 (522)
T cd03340 311 -PEEDLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAK-------------------- 364 (522)
T ss_pred -CHHHHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEECCEEEEEEECCCCCc--------------------
Confidence 4578999999999999997 8889999999999997 6778899999987653
Q ss_pred HHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcC-CChhHHHHHHH
Q 013822 284 LKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQI 361 (436)
Q Consensus 284 l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~-~~~~~~~g~~~ 361 (436)
.+||++||+|+..++|.||+++||++++|+++++| +|||||++|++++..|++++. .++++|+++++
T Consensus 365 -----------~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~ 433 (522)
T cd03340 365 -----------TCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINA 433 (522)
T ss_pred -----------eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 58999999999999999999999999999999996 999999999999999998865 48899999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC-CCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 362 VQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS-SDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 362 ~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~-~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
|++||+.||++||+|||+||.++ .+|++. ++ .++|||+.+|++.||++.|||||+.||++++++|+++|++||+|
T Consensus 434 fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~i 513 (522)
T cd03340 434 FAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSV 513 (522)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999 999763 33 57999999999999999999999999999999999999999996
No 25
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4e-71 Score=585.02 Aligned_cols=372 Identities=15% Similarity=0.175 Sum_probs=321.6
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcc-cCCC---HHHHHHHHHHhcC-----Cc
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQAR-KITT---FEEIAQVGTTAAN-----GD 78 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~-~i~~---~~~l~~vA~ts~~-----~~ 78 (436)
+||||||++||+++||++++++++ |+||+.|++||+.|++.++++|+++++ |+++ .+.|.++|+++.+ ++
T Consensus 88 ~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~ 167 (531)
T TIGR02346 88 IGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNE 167 (531)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchH
Confidence 799999999999999999999999 999999999999999999999999986 7643 6779999877764 37
Q ss_pred hhHHHHHHHHHHhcccCC--ceeee-------cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccc
Q 013822 79 GEIGELIAKVFEKGWEND--LITIF-------DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK 149 (436)
Q Consensus 79 ~~~~~li~~a~~~vg~~~--~I~v~-------~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~ 149 (436)
+.|++++++|+.+++.++ .+.++ .|++.. ++++++|++|++++. + + ...++||+|++++++
T Consensus 168 ~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~-ds~li~Gi~~~~~~~-~-~-------~k~i~n~kI~l~~~~ 237 (531)
T TIGR02346 168 DFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSIS-NSEVLKGMVFNREAE-G-S-------VKRVKNAKVAVFSCP 237 (531)
T ss_pred HHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChh-hceeEeeeEEeccCC-C-C-------ceeccCCCEEEEecC
Confidence 899999999999998654 33332 576665 799999999999932 1 1 124556666555543
Q ss_pred c-------------CC-----------HHHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCc
Q 013822 150 I-------------SN-----------SNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLA 205 (436)
Q Consensus 150 i-------------~~-----------~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~ 205 (436)
+ ++ .+++.++++.+.+.|+||||++++|++.++++|..+ +|+|||+|+++
T Consensus 238 l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~~~ 311 (531)
T TIGR02346 238 LDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPSKF 311 (531)
T ss_pred cCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCCHH
Confidence 2 12 245778899999999999999999999999977743 58999998755
Q ss_pred cchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccH
Q 013822 206 EDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD 282 (436)
Q Consensus 206 ~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~i---~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~ 282 (436)
+|+|||.+|||+++++ ++++++++||+|+.|++ ++++++++.++..
T Consensus 312 -----~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~--------------------- 360 (531)
T TIGR02346 312 -----ELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG--------------------- 360 (531)
T ss_pred -----HHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEECCEEEEEEEccCC---------------------
Confidence 5899999999999986 78899999999999864 4567899987642
Q ss_pred HHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHHH
Q 013822 283 KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQ 360 (436)
Q Consensus 283 ~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~ 360 (436)
.+++|||+|||+|+.+++|+||+++||+|++|+++++| +|||||++|++++..|++++.. ++++|++++
T Consensus 361 ---------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~ 431 (531)
T TIGR02346 361 ---------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIK 431 (531)
T ss_pred ---------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 24679999999999999999999999999999999999 9999999999999999988654 789999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCc--cccccccCcccccccHHHHHHHHHHHHHHHh
Q 013822 361 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGN--YVDMFKCGDVDPLKHVPSEFAKATSMISLKN 434 (436)
Q Consensus 361 ~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~g~--~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL 434 (436)
+|++||+.||++||+|||+||.++ .+|+.. ++.++|||+.+|+ +.||++.|||||+.||+++|++|+++|++||
T Consensus 432 ~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 511 (531)
T TIGR02346 432 KFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVL 511 (531)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 999763 4568999999999 5999999999999999999999999999999
Q ss_pred cC
Q 013822 435 AI 436 (436)
Q Consensus 435 ~i 436 (436)
+|
T Consensus 512 ~i 513 (531)
T TIGR02346 512 RV 513 (531)
T ss_pred hh
Confidence 97
No 26
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-70 Score=580.30 Aligned_cols=376 Identities=16% Similarity=0.157 Sum_probs=332.2
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC-----CHHHHHHHHHHhcC------
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT-----TFEEIAQVGTTAAN------ 76 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~-----~~~~l~~vA~ts~~------ 76 (436)
+||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++|+++++|++ +.+.|.++|++|++
T Consensus 87 ~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~ 166 (522)
T TIGR02345 87 VGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAH 166 (522)
T ss_pred hCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccc
Confidence 799999999999999999999999 999999999999999999999999999987 44689999999977
Q ss_pred CchhHHHHHHHHHHhcccCC----ceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEecccc
Q 013822 77 GDGEIGELIAKVFEKGWEND----LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI 150 (436)
Q Consensus 77 ~~~~~~~li~~a~~~vg~~~----~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i 150 (436)
+++.|++++++|+.+++.++ .|.+. +|++.. ++++++|++|+++|.+|||.+.+ ..++||+|+++|+++
T Consensus 167 ~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~-ds~~v~Giv~~~~~~~~~~~~~~----~~~~n~kIll~~~~L 241 (522)
T TIGR02345 167 EKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQ-DSVLVNGVAFKKTFSYAGFEQQP----KKFANPKILLLNVEL 241 (522)
T ss_pred hHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHH-hcceecceEEecccCccccccCC----ceeccceEEEEecCc
Confidence 57889999999999998652 23332 677776 58899999999999999986644 468999999999876
Q ss_pred C-------------CHHH-----------HHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCcc
Q 013822 151 S-------------NSNV-----------IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAE 206 (436)
Q Consensus 151 ~-------------~~~~-----------i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~ 206 (436)
+ ++++ +.+.++.+.+.|.+++++.++|++.++++|..+ +|++++++
T Consensus 242 e~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~~~v---- 311 (522)
T TIGR02345 242 ELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIFCAGRV---- 311 (522)
T ss_pred ccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcEEEecC----
Confidence 4 2333 334566677789899999999999999988865 47888764
Q ss_pred chhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHH
Q 013822 207 DRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDK 283 (436)
Q Consensus 207 ~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~i---~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~ 283 (436)
.++++++++++|||+++++ ++++++++||+|+.|+. ++++++++.||++++
T Consensus 312 -~~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~-------------------- 365 (522)
T TIGR02345 312 -SDEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIGSERYNYFTGCPHAK-------------------- 365 (522)
T ss_pred -CHHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEECCeEEEEEEcCCCCc--------------------
Confidence 4567999999999999997 78888999999999863 567899999986653
Q ss_pred HHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHHhcC-CChhHHHHHHH
Q 013822 284 LKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQT-TNSDQKIGVQI 361 (436)
Q Consensus 284 l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~-gvV~GGGa~e~~~s~~L~~~~~-~~~~~~~g~~~ 361 (436)
+|||++||+|+.+++|+||+++||+|++|+++++ |+|||||++|+++++.|++++. .++++|+++++
T Consensus 366 -----------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~ 434 (522)
T TIGR02345 366 -----------TCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEA 434 (522)
T ss_pred -----------eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 5999999999999999999999999999999997 6999999999999999998865 48899999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 362 VQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 362 ~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 435 ~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (522)
T TIGR02345 435 FAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSI 513 (522)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999 999762 4567999999999999999999999999999999999999999986
No 27
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-70 Score=578.92 Aligned_cols=373 Identities=14% Similarity=0.159 Sum_probs=329.2
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCC------ch
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT--TFEEIAQVGTTAANG------DG 79 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~--~~~~l~~vA~ts~~~------~~ 79 (436)
+||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++|+++++|++ +.+.|.++|+++.++ ++
T Consensus 86 ~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ 165 (525)
T TIGR02344 86 VGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSD 165 (525)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHH
Confidence 799999999999999999999999 999999999999999999999999999986 566799999877553 57
Q ss_pred hHHHHHHHHHHhcccCC-----------ceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEe
Q 013822 80 EIGELIAKVFEKGWEND-----------LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIY 146 (436)
Q Consensus 80 ~~~~li~~a~~~vg~~~-----------~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~ 146 (436)
.|++++++|+..++.++ .|.++ +|++..| +++++|+.|++++.++.| +..++||+|+++
T Consensus 166 ~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~d-S~lv~Gvvi~k~~~~~~m-------~~~~~n~kIlll 237 (525)
T TIGR02344 166 LMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIED-SCVLKGVMINKDVTHPKM-------RRYIENPRIVLL 237 (525)
T ss_pred HHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHh-cCcccceEEecccCCCCC-------ccccCCCCEEEE
Confidence 89999999999998643 24555 4887765 999999999999887754 347899999999
Q ss_pred ccccCC-------------HHHHHHHHH-----------HHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeC
Q 013822 147 DTKISN-------------SNVIRQASL-----------PCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAA 202 (436)
Q Consensus 147 d~~i~~-------------~~~i~~~le-----------~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~ 202 (436)
+++++. ++++.++++ ++.+.|..++++.+.+++.++++|..+ +|++++
T Consensus 238 ~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av~-- 309 (525)
T TIGR02344 238 DCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAIR-- 309 (525)
T ss_pred ecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEEe--
Confidence 988754 466655544 677778677777789999999988764 588887
Q ss_pred CCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-eeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHhhh
Q 013822 203 GLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVIA---TMDNVVIIGGSGELVDIQERCEQLRSTIKL 278 (436)
Q Consensus 203 ~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~-a~~v~i---~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~ 278 (436)
+.++++|+|||++|||+++++ ++++++++||+ |+.|++ ++++|++|++|++++
T Consensus 310 ---~v~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~--------------- 366 (525)
T TIGR02344 310 ---RVRKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPK--------------- 366 (525)
T ss_pred ---cCCHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCC---------------
Confidence 456789999999999999996 78888999999 998875 667899999988764
Q ss_pred cccHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHHhcC-CChhHH
Q 013822 279 STSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQT-TNSDQK 356 (436)
Q Consensus 279 ~~s~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~-gvV~GGGa~e~~~s~~L~~~~~-~~~~~~ 356 (436)
.|||++||+|+.+++|+||+++||++++++++++ ++|||||++|+++|..|++++. .++++|
T Consensus 367 ----------------~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~ 430 (525)
T TIGR02344 367 ----------------ACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ 430 (525)
T ss_pred ----------------EEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH
Confidence 5999999999999999999999999999999998 5999999999999999998865 488999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHH
Q 013822 357 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMIS 431 (436)
Q Consensus 357 ~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~-~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~ 431 (436)
+++++|++||+.||++||+|||+|+.++ .+|++. + +.++|||+.+|++.||++.|||||+.||+++|++|+++|+
T Consensus 431 ~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~ 510 (525)
T TIGR02344 431 WPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESAC 510 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999762 2 4679999999999999999999999999999999999999
Q ss_pred HHhcC
Q 013822 432 LKNAI 436 (436)
Q Consensus 432 ~iL~i 436 (436)
+||+|
T Consensus 511 ~iL~i 515 (525)
T TIGR02344 511 MLLRI 515 (525)
T ss_pred HHHhh
Confidence 99986
No 28
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-69 Score=571.40 Aligned_cols=372 Identities=19% Similarity=0.250 Sum_probs=327.8
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC-----CHHHHHHHHHHhcC------
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT-----TFEEIAQVGTTAAN------ 76 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~-----~~~~l~~vA~ts~~------ 76 (436)
+||||||+++||++||++++++++ |+||+.|++||+.|.+.++++|+++++|++ +.+.|.++|+|+.+
T Consensus 85 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~ 164 (517)
T cd03336 85 VGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQ 164 (517)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccch
Confidence 799999999999999999999999 999999999999999999999999999984 24679999986654
Q ss_pred CchhHHHHHHHHHHhcccC---Cceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccC
Q 013822 77 GDGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS 151 (436)
Q Consensus 77 ~~~~~~~li~~a~~~vg~~---~~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~ 151 (436)
+++.|++++++|+.+++.. ..|.+. +|++.. ++++++|+++++++.++ ++..++||+|+++|++++
T Consensus 165 ~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~-ds~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~~le 235 (517)
T cd03336 165 DKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLK-DSYLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMD 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhccCCccceeEEEccCCCcc-ceEEEeeEEEecccCCC--------CCCeeccccEEEEecCCC
Confidence 3678999999999998632 235554 577775 69999999999886543 234789999999998654
Q ss_pred --------------CHHHH-----------HHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCcc
Q 013822 152 --------------NSNVI-----------RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAE 206 (436)
Q Consensus 152 --------------~~~~i-----------~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~ 206 (436)
+++++ .+.++.+.+.|.+++++++.|++.++++|..+ +|++||+|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v~~-- 307 (517)
T cd03336 236 TDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHADF-- 307 (517)
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecCCH--
Confidence 45444 23466788899999999999999999988866 4899999863
Q ss_pred chhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHH
Q 013822 207 DRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDK 283 (436)
Q Consensus 207 ~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~ 283 (436)
++|+|||++|||+++++ ++++++++||+|+.|+ ++++++++|.+|+++
T Consensus 308 ---~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~--------------------- 358 (517)
T cd03336 308 ---DGVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAG--------------------- 358 (517)
T ss_pred ---HHHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEECCeEEEEEEccCCC---------------------
Confidence 35999999999999996 8889999999999985 567889999998754
Q ss_pred HHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHH
Q 013822 284 LKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQI 361 (436)
Q Consensus 284 l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~ 361 (436)
++|||+|||+|+.+++|.||+++||+|++|+++++| +|||||++|+++|+.|++++.. ++++|+++++
T Consensus 359 ----------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~ 428 (517)
T cd03336 359 ----------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEA 428 (517)
T ss_pred ----------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHH
Confidence 469999999999999999999999999999999997 9999999999999999988664 8899999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 362 VQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 362 ~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
|++||+.||++||+|||+|+.++ ++|++. ++.++|||+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 429 ~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 507 (517)
T cd03336 429 FAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRV 507 (517)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999 989762 4678999999999999999999999999999999999999999986
No 29
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-69 Score=565.83 Aligned_cols=356 Identities=14% Similarity=0.172 Sum_probs=319.8
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCC------ch
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT--TFEEIAQVGTTAANG------DG 79 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~--~~~~l~~vA~ts~~~------~~ 79 (436)
+||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++|+++++|++ +.+.|.++|+++.++ ++
T Consensus 86 ~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~ 165 (480)
T cd03337 86 VGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSD 165 (480)
T ss_pred hCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHH
Confidence 799999999999999999999999 999999999999999999999999999987 778899999999873 45
Q ss_pred hHHHHHHHHHHhcccC--C---------ceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEe
Q 013822 80 EIGELIAKVFEKGWEN--D---------LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIY 146 (436)
Q Consensus 80 ~~~~li~~a~~~vg~~--~---------~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~ 146 (436)
.|++++++|+..++++ + .|.|+ +|++.. ++++++|++|++++.||.| +.+++||+|+++
T Consensus 166 ~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~-ds~li~Gvvi~k~~~~~~m-------~~~~~n~kIlll 237 (480)
T cd03337 166 LMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIE-DSRVLDGVMLNKDVTHPKM-------RRRIENPRIVLL 237 (480)
T ss_pred HHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHH-hcccccceEEeccCCCCCC-------CcEecCCCEEEE
Confidence 8999999999999754 2 24454 477765 5999999999999998855 347899999999
Q ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeC
Q 013822 147 DTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 226 (436)
Q Consensus 147 d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~ 226 (436)
+++++. ++|++++|++.++++|..| +|++|++ .++++|+|||++|||+++++
T Consensus 238 ~~~Le~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~~-----v~~~~L~rIa~~tGa~ii~~ 289 (480)
T cd03337 238 DCPLEY-----------------LVITEKGVSDLAQHYLVKA------GITALRR-----VRKTDNNRIARACGATIVNR 289 (480)
T ss_pred ecCcce-----------------EEEeCCCccHHHHHHHHHC------CcEEEEe-----CCHHHHHHHHHHHCCEEecc
Confidence 998875 8899999999999999887 4889985 46678999999999999997
Q ss_pred CCCCCcCCCCCCCceee-eEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEEcc
Q 013822 227 GSGMNSTYFVPLKLGSC-KRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCG 302 (436)
Q Consensus 227 ~~~~~~~~~~~~~LG~a-~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~v~G 302 (436)
++++++++||+| +.++ +++++++++++|+++. .|||++||
T Consensus 290 -----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------------------~~TIllrG 333 (480)
T cd03337 290 -----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPK-------------------------------ACTILLRG 333 (480)
T ss_pred -----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCC-------------------------------EEEEEEEC
Confidence 788889999994 5443 3557789999987753 59999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013822 303 HGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVD 380 (436)
Q Consensus 303 ~t~~~l~E~~~~~~DAl~a~k~al~~-gvV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~~a~AL~~ip~~La~NaG~d 380 (436)
+|+.+++|.||+++||++++++++++ ++|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|
T Consensus 334 ~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d 413 (480)
T cd03337 334 ASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGAN 413 (480)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999998 59999999999999999988664 88999999999999999999999999999
Q ss_pred hHHH-HHHHhc---C-CCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 381 GSVI-DKLLEQ---D-SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 381 ~~~i-~~l~~~---~-~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+.++ .+|++. + +.++|+|+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 414 ~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 474 (480)
T cd03337 414 VIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRI 474 (480)
T ss_pred HHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999 999762 3 467999999999999999999999999999999999999999997
No 30
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=2e-69 Score=572.71 Aligned_cols=372 Identities=19% Similarity=0.240 Sum_probs=326.9
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCC-----HHHHHHHHHHhcCC-----
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT-----FEEIAQVGTTAANG----- 77 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~-----~~~l~~vA~ts~~~----- 77 (436)
+||||||+++||++||++++++++ |+||+.|++||++|++.++++|+++++|+++ .+.|.++|+|+.++
T Consensus 97 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~ 176 (533)
T PTZ00212 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTV 176 (533)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccch
Confidence 799999999999999999999999 9999999999999999999999999999864 46799999876653
Q ss_pred -chhHHHHHHHHHHhcccC---Cceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEecccc-
Q 013822 78 -DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI- 150 (436)
Q Consensus 78 -~~~~~~li~~a~~~vg~~---~~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i- 150 (436)
.+.|++++++|+..+... ..|.+. +|++.. ++++++|+++++++.++ |+.+++||+|+++|+++
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~-ds~lv~G~v~~~~~~~~--------~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLR-DSYLEDGFILEKKIGVG--------QPKRLENCKILVANTPMD 247 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcc-ccEEEEeEEEecccCCC--------CCccccCCcEEEEeCCCC
Confidence 457899999999888432 234443 677775 69999999999986543 23578999999999876
Q ss_pred -------------CCHHHHH-----------HHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCcc
Q 013822 151 -------------SNSNVIR-----------QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAE 206 (436)
Q Consensus 151 -------------~~~~~i~-----------~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~ 206 (436)
++++++. +.++.+.+.|.+++++++.|++.++++|..+ +|++||+++
T Consensus 248 ~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~------~I~avr~v~--- 318 (533)
T PTZ00212 248 TDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA------GIMAIEHAD--- 318 (533)
T ss_pred CCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CCEEEecCC---
Confidence 5555432 2466678889999999999999999988866 488999653
Q ss_pred chhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHH
Q 013822 207 DRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDK 283 (436)
Q Consensus 207 ~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~ 283 (436)
+.+++|||++|||+++++ ++++++++||+|+.|+ +++++|++|++|..+
T Consensus 319 --~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~--------------------- 370 (533)
T PTZ00212 319 --FDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKG--------------------- 370 (533)
T ss_pred --HHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEECCeEEEEEEccCCC---------------------
Confidence 367999999999999996 8888899999999997 788899999988643
Q ss_pred HHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHH
Q 013822 284 LKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQI 361 (436)
Q Consensus 284 l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~ 361 (436)
++|||+|||+|+.+++|+||+++||||++|+++++| +|||||++|+++|..|++++.. ++++|+++++
T Consensus 371 ----------~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~ 440 (533)
T PTZ00212 371 ----------EACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEA 440 (533)
T ss_pred ----------CEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 579999999999999999999999999999999997 9999999999999999998664 8899999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 362 VQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 362 ~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+|++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 441 ~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 519 (533)
T PTZ00212 441 FAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRV 519 (533)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999 99975 34578999999999999999999999999999999999999999996
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.4e-69 Score=565.91 Aligned_cols=372 Identities=19% Similarity=0.231 Sum_probs=324.3
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCC-----HHHHHHHHHHhcCC-----
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT-----FEEIAQVGTTAANG----- 77 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~-----~~~l~~vA~ts~~~----- 77 (436)
+||||||+++|+++||++|+++++ |+||+.|++||+.|.+.++++|+++++|+++ .++|.++|+|++++
T Consensus 86 ~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~ 165 (519)
T TIGR02341 86 VGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQ 165 (519)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhh
Confidence 799999999999999999999999 9999999999999999999999999999853 46799999988873
Q ss_pred -chhHHHHHHHHHHhcccC---Cceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccC
Q 013822 78 -DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS 151 (436)
Q Consensus 78 -~~~~~~li~~a~~~vg~~---~~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~ 151 (436)
.+.|+++.++|+..+... ..|.+. +|++.. ++++++|+++++++.++ ++..++||+|+++|++++
T Consensus 166 ~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~-~s~l~~G~v~~~~~~~~--------~~~~~~n~~Ili~~~~Le 236 (519)
T TIGR02341 166 HKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLN-DSYLDEGFLLEKKIGVN--------QPKRIENAKILIANTPMD 236 (519)
T ss_pred HHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcc-cceEEeeEEEeccCCCC--------CceeeccccEEEEecCCC
Confidence 345788888888877321 236665 577775 69999999999886442 234789999999998765
Q ss_pred C--------------HHHH-----------HHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCcc
Q 013822 152 N--------------SNVI-----------RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAE 206 (436)
Q Consensus 152 ~--------------~~~i-----------~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~ 206 (436)
. ++++ ...++.+.+.|.+++++++.|++.++++|..+ +|+++|+|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~~~-- 308 (519)
T TIGR02341 237 TDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA------GVMAIEHADF-- 308 (519)
T ss_pred CCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecCCH--
Confidence 2 3222 23366788899999999999999999988765 5899999863
Q ss_pred chhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHH
Q 013822 207 DRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDK 283 (436)
Q Consensus 207 ~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~ 283 (436)
.+|+|||++|||+++++ ++++++++||+|+.|+ +++++++++.+|+++
T Consensus 309 ---~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~--------------------- 359 (519)
T TIGR02341 309 ---EGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLG--------------------- 359 (519)
T ss_pred ---HHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEECCEEEEEEEcCCCC---------------------
Confidence 46999999999999996 8888899999999885 567789999998754
Q ss_pred HHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHH
Q 013822 284 LKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQI 361 (436)
Q Consensus 284 l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~-gvV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~ 361 (436)
++|||++||+|+.+++|+||+++||++++|+++++ ++|||||++|+++++.|++++.. ++++|+++++
T Consensus 360 ----------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~ 429 (519)
T TIGR02341 360 ----------EACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEA 429 (519)
T ss_pred ----------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHH
Confidence 46999999999999999999999999999999998 59999999999999999988664 8899999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 362 VQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 362 ~a~AL~~ip~~La~NaG~d~~~i-~~l~~~---~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
|++||+.|||+||+|||+|+.++ .+|++. ++.++|||+.+|++.||++.|||||+.||++++++|+++|++||+|
T Consensus 430 ~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 508 (519)
T TIGR02341 430 FARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRV 508 (519)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999 999763 4567999999999999999999999999999999999999999986
No 32
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.2e-68 Score=553.09 Aligned_cols=356 Identities=28% Similarity=0.372 Sum_probs=321.9
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhccc--CCCHHHHHHHHHHhcC------Cch
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARK--ITTFEEIAQVGTTAAN------GDG 79 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~--i~~~~~l~~vA~ts~~------~~~ 79 (436)
+||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++|+++++| +.+.+++.++|+|+++ +++
T Consensus 78 ~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~ 157 (464)
T cd00309 78 VGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDD 157 (464)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchH
Confidence 799999999999999999999999 9999999999999999999999999999 5577899999999998 688
Q ss_pred hHHHHHHHHHHhccc------CCceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccC
Q 013822 80 EIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS 151 (436)
Q Consensus 80 ~~~~li~~a~~~vg~------~~~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~ 151 (436)
.+++++++|+.++++ .+.|+|+ +|++.. ++++++|++|+++|.+|+|+ ..++||+|++++++|+
T Consensus 158 ~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~-ds~li~Gi~~~~~~~~~~m~-------~~~~n~~Ili~~~~Le 229 (464)
T cd00309 158 FLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLE-DSELVVGMVFDKGYLSPYMP-------KRLENAKILLLDCKLE 229 (464)
T ss_pred HHHHHHHHHHHHhccccCccccceEEEEecCCCCcc-cceeeeeEEEecCCCCCCCc-------eeecCceEEEEecCcc
Confidence 899999999999987 5678886 455554 68999999999999999873 4799999999999988
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCC
Q 013822 152 NSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMN 231 (436)
Q Consensus 152 ~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~ 231 (436)
. ++++.++|++.++++|..+ +|++|++ .++++|+|||++|||+++++
T Consensus 230 ~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~~-----~~~~~L~~Ia~~tGa~ii~~----- 276 (464)
T cd00309 230 Y-----------------VVIAEKGIDDEALHYLAKL------GIMAVRR-----VRKEDLERIAKATGATIVSR----- 276 (464)
T ss_pred e-----------------EEecCCCcCHHHHHHHHHC------CeEEEEe-----CCHHHHHHHHHHhCCEEecc-----
Confidence 6 5555556999999988864 5899986 45788999999999999987
Q ss_pred cCCCCCCCceeeeEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEEccCchhHH
Q 013822 232 STYFVPLKLGSCKRVIA---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEV 308 (436)
Q Consensus 232 ~~~~~~~~LG~a~~v~i---~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~v~G~t~~~l 308 (436)
++++++++||+|+.|++ +++++++|.+++.+ +.|||+|||+|+.++
T Consensus 277 ~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l 325 (464)
T cd00309 277 LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG-------------------------------KVATILLRGATEVEL 325 (464)
T ss_pred cccCCcccCccccEEEEEEEcCeeEEEEEecCCC-------------------------------CEEEEEEeCCcHHHH
Confidence 78888899999999975 45578888887653 469999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-H
Q 013822 309 REKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-D 385 (436)
Q Consensus 309 ~E~~~~~~DAl~a~k~al~~-gvV~GGGa~e~~~s~~L~~~~~-~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~ 385 (436)
+|+||+++||++++|+++++ ++|||||++|+++++.|++++. .++++|+++++|++||+.||++|++|||+|+.++ .
T Consensus 326 ~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~ 405 (464)
T cd00309 326 DEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVT 405 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999998 6999999999999999998876 4899999999999999999999999999999999 9
Q ss_pred HHHhc---CCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 386 KLLEQ---DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 386 ~l~~~---~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+|++. +..++|+|..+|++.||++.|||||+.||+++++.|+++|++||+|
T Consensus 406 ~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 459 (464)
T cd00309 406 KLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTI 459 (464)
T ss_pred HHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhH
Confidence 89763 3457899999999999999999999999999999999999999986
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5e-68 Score=554.64 Aligned_cols=358 Identities=18% Similarity=0.222 Sum_probs=316.7
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhccc-CC---CHHHHHHHHHHhcC-----Cc
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARK-IT---TFEEIAQVGTTAAN-----GD 78 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~-i~---~~~~l~~vA~ts~~-----~~ 78 (436)
+||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++|++++.+ ++ +.+.+.++++++.+ ++
T Consensus 78 ~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 157 (472)
T cd03341 78 IGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNE 157 (472)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchH
Confidence 799999999999999999999999 9999999999999999999999999866 53 45668888887753 46
Q ss_pred hhHHHHHHHHHHhcccC--Ccee-----ee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccc
Q 013822 79 GEIGELIAKVFEKGWEN--DLIT-----IF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK 149 (436)
Q Consensus 79 ~~~~~li~~a~~~vg~~--~~I~-----v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~ 149 (436)
+.|++++++|+..++++ +.+. |. +|++.. ++++++|++|++.+.+ +...++||+|++++++
T Consensus 158 ~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~-ds~lv~Giv~~~~~~~---------~~~~~~n~~Ili~~~~ 227 (472)
T cd03341 158 DFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLE-DSKVVRGMVFKREPEG---------SVKRVKKAKVAVFSCP 227 (472)
T ss_pred HHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcc-cceEEeeEEEccccCC---------CceeccCCcEEEEecc
Confidence 78999999999999865 4433 32 577766 5899999999875321 2257899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCC
Q 013822 150 ISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSG 229 (436)
Q Consensus 150 i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~ 229 (436)
++. |+|+||++++|+++++++|.. .+|++||+|+ +++|+|||.+|||+++++
T Consensus 228 Le~--------------g~~lvi~~~~I~d~al~~l~~------~~I~av~~~~-----~~~Le~Ia~~tGa~ii~~--- 279 (472)
T cd03341 228 FDI--------------GVNVIVAGGSVGDLALHYCNK------YGIMVIKINS-----KFELRRLCRTVGATPLPR--- 279 (472)
T ss_pred ccC--------------CCeEEEECCCCCHHHHHHHHH------CCeEEEEeCC-----HHHHHHHHHHhCCEEecc---
Confidence 886 889999999999999998664 3699999986 456999999999999987
Q ss_pred CCcCCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEEccCchh
Q 013822 230 MNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKA 306 (436)
Q Consensus 230 ~~~~~~~~~~LG~a~~v~i~~---~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~v~G~t~~ 306 (436)
++++++++||+|+.|++.+ ++|+++.+|++. +++|||++||+|+.
T Consensus 280 --~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------------------------------~~~~TI~lrG~t~~ 327 (472)
T cd03341 280 --LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED------------------------------SKIATIVLRGATQN 327 (472)
T ss_pred --cccCCHhHCCCceEEEEEEECCeeEEEEEccCCC------------------------------CCeEEEEEECCCHH
Confidence 7888889999999997654 889999987641 35799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 013822 307 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQT-TNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI 384 (436)
Q Consensus 307 ~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~-~~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i 384 (436)
+++|+||+++||+|++|+++++| +|||||++|+++++.|++++. .++++++++++|++||+.||++||+|||+||.++
T Consensus 328 ~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~ 407 (472)
T cd03341 328 ILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEV 407 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999998 999999999999999998865 4789999999999999999999999999999999
Q ss_pred -HHHHh---cCCCCeeEeCCCC--ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 385 -DKLLE---QDSSDLGYNPARG--NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 385 -~~l~~---~~~~~~G~d~~~g--~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
.+|+. .++.++|||+.+| ++.||++.|||||+.||+++|++|+++|++||+|
T Consensus 408 ~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 465 (472)
T cd03341 408 LSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRV 465 (472)
T ss_pred HHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhh
Confidence 88875 3456899999999 9999999999999999999999999999999997
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-67 Score=504.25 Aligned_cols=376 Identities=16% Similarity=0.152 Sum_probs=335.2
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC--C----HHHHHHHHHHhcCC----
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT--T----FEEIAQVGTTAANG---- 77 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~--~----~~~l~~vA~ts~~~---- 77 (436)
+||||||||+||+++|+++..+++ |+||+.|+++|++|...+++.|+++++.++ + ++.|++.|.|++++
T Consensus 90 VGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~ 169 (543)
T KOG0361|consen 90 VGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIR 169 (543)
T ss_pred ccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhh
Confidence 799999999999999999999999 999999999999999999999999998886 2 24578999887753
Q ss_pred --chhHHHHHHHHHHhcccC---Cceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEecccc
Q 013822 78 --DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI 150 (436)
Q Consensus 78 --~~~~~~li~~a~~~vg~~---~~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i 150 (436)
..+|++++++|+..++.+ ..|.|+ +|++++ +|.+++|+.|++.|....|-.. +..+.||+|+++|.++
T Consensus 170 ~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~-dS~lv~GVAFkKtFsYAGfEqq----PKk~~NpkIl~LnvEL 244 (543)
T KOG0361|consen 170 QEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAME-DSLLVNGVAFKKTFSYAGFEQQ----PKKFLNPKILLLNVEL 244 (543)
T ss_pred hhHHHHHHHHHHHHHhhccccchhhcceeecCCCccc-hhhhccceeeeehccccchhhC----ccccCCceEEEEeeee
Confidence 668999999999998743 346665 788887 5899999999999987776443 3479999999998643
Q ss_pred -------------CCHHH-----------HHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCcc
Q 013822 151 -------------SNSNV-----------IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAE 206 (436)
Q Consensus 151 -------------~~~~~-----------i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~ 206 (436)
.++++ +.+.|+++..+|+++|+..-.|.|.|.++|+.+.+ ++ .|+
T Consensus 245 ElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi------FC-----AGR 313 (543)
T KOG0361|consen 245 ELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI------FC-----AGR 313 (543)
T ss_pred eecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc------ee-----cCc
Confidence 34443 44678899999999999888999999999986652 33 267
Q ss_pred chhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHH
Q 013822 207 DRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDK 283 (436)
Q Consensus 207 ~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~ 283 (436)
+..++|.|...+|||++.++ ..++.++.||.|..++ ++.++|.+|+||+..+
T Consensus 314 V~~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~ak-------------------- 368 (543)
T KOG0361|consen 314 VPEEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAK-------------------- 368 (543)
T ss_pred CCHHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHHHhhcchhhhhhcCCCccc--------------------
Confidence 77899999999999999986 7899999999999985 8999999999998653
Q ss_pred HHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHH
Q 013822 284 LKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQI 361 (436)
Q Consensus 284 l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~ 361 (436)
+||+++||+.++.++|.+|++|||++++|.|+++. +|+|||++||++|+.|++++.. .+++|+-+.+
T Consensus 369 -----------tcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A 437 (543)
T KOG0361|consen 369 -----------TCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINA 437 (543)
T ss_pred -----------eeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHH
Confidence 69999999999999999999999999999999976 9999999999999999999886 9999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 362 VQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 362 ~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
|++|||.|||+||+|||+|...+ ++||. ++..|+|+|..+..+.|+++.+||||..||.+++..|+|+|++||.|
T Consensus 438 ~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsv 516 (543)
T KOG0361|consen 438 YAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSV 516 (543)
T ss_pred HHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEeh
Confidence 99999999999999999999999 99986 47899999999999999999999999999999999999999999875
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=5.8e-63 Score=518.92 Aligned_cols=374 Identities=22% Similarity=0.338 Sum_probs=332.0
Q ss_pred cccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCH-HHHHHHHHHhcCCc------h
Q 013822 8 YLFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTF-EEIAQVGTTAANGD------G 79 (436)
Q Consensus 8 ~~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~-~~l~~vA~ts~~~~------~ 79 (436)
-+||||||+++|+++||+++.++++ |+||..|++||+.|.+.+++.|+++++++++. +.++++|.++++++ +
T Consensus 58 ~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~ 137 (485)
T PF00118_consen 58 EVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSD 137 (485)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHH
T ss_pred hhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchh
Confidence 4799999999999999999999999 99999999999999999999999999999876 89999999999876 7
Q ss_pred hHHHHHHHHHHhcccC---Cceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHH
Q 013822 80 EIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSN 154 (436)
Q Consensus 80 ~~~~li~~a~~~vg~~---~~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~ 154 (436)
.+++++++|+..+..+ +.+.+. .|+.. +++++++|++|+++|.+|.|+ ..++||+|++++++++...
T Consensus 138 ~l~~li~~a~~~~~~~~~~~~i~i~~i~g~~~-~dS~li~Giv~~~~~~~~~~~-------~~~~~~~Ill~~~~L~~~~ 209 (485)
T PF00118_consen 138 HLSKLIVDAIKSIKSNFDLDNIKIIKIPGGSI-SDSELINGIVLDKGFSSPNMP-------KKIENPKILLLNCPLEYSK 209 (485)
T ss_dssp HHHHHHHHHHHHHTTTHHGGGEEEEEEESSSS-GGEEEESEEEESSSBSSTTSB-------SEEESEEEEEESSEBSSCC
T ss_pred hhhhhHHHHHHhhcccccccchhhhhhccccc-cccccccceeeeccccccccc-------cccccceEEeeeccccccc
Confidence 8999999999444211 123332 45566 469999999999999988443 3679999999999887666
Q ss_pred H-----------------------HHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhH
Q 013822 155 V-----------------------IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 211 (436)
Q Consensus 155 ~-----------------------i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~ 211 (436)
. +.++++++.+.|.|+++++++|++.++++|..|+ |.+++ +.++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~------I~~i~-----~v~~~~ 278 (485)
T PF00118_consen 210 SFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNG------ILVIR-----RVSKED 278 (485)
T ss_dssp HSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCT------HEEES-----SEHHHH
T ss_pred ccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhh------hhccc-----cchHHH
Confidence 5 8899999999999999999999999999998775 56665 457788
Q ss_pred HHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEEEc--CCCChhhHHHHHHHHHHHhhhcccHHHHH
Q 013822 212 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIG--GSGELVDIQERCEQLRSTIKLSTSDKLKD 286 (436)
Q Consensus 212 le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v---~i~~~~~~~~~--~~~~~~~i~~r~~~l~~~l~~~~s~~l~~ 286 (436)
|++|+.+|||+++++ +++++++++|+|+.+ ++++++|++++ ++.
T Consensus 279 l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-------------------------- 327 (485)
T PF00118_consen 279 LERIARATGASIISS-----LDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCL-------------------------- 327 (485)
T ss_dssp HHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSES--------------------------
T ss_pred HHhhhcccCCcEecc-----cccccchhhhhhhhhhhccccccccccccccccc--------------------------
Confidence 999999999999997 688888889999999 67889999998 343
Q ss_pred HHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHHHHH
Q 013822 287 RLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQN 364 (436)
Q Consensus 287 Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~~a~ 364 (436)
+++.+||+|||+|+.+++|+||+++||+++++++++++ +|||||++|++++++|++++.. ++++++++++|++
T Consensus 328 -----~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~ 402 (485)
T PF00118_consen 328 -----SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFAD 402 (485)
T ss_dssp -----SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH
T ss_pred -----ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHH
Confidence 34679999999999999999999999999999999965 9999999999999999887764 8899999999999
Q ss_pred HHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 365 ALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 365 AL~~ip~~La~NaG~d~~~i-~~l~~--~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
||+.||++|++|||+|+.++ ++++. ..++++|||+.+|++.||++.|||||+.+|+++++.|+++|++||+|
T Consensus 403 aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~i 477 (485)
T PF00118_consen 403 ALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRI 477 (485)
T ss_dssp HTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred HHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99987 34579999999999999999999999999999999999999999986
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-59 Score=451.01 Aligned_cols=369 Identities=20% Similarity=0.271 Sum_probs=323.7
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCC-----HHHHHHHHHHhcCC-----
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT-----FEEIAQVGTTAANG----- 77 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~-----~~~l~~vA~ts~~~----- 77 (436)
+|||||||+|||++||+||++++. .+||+.|+.||+.|...+.+.|.+.++..++ +++|.++|+|.+++
T Consensus 90 vGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq 169 (527)
T KOG0363|consen 90 VGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQ 169 (527)
T ss_pred cCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999 9999999999999999999999998877552 36899999887652
Q ss_pred -chhHHHHHHHHHHhcccCC---ceee--ecCCCccceeEEeeeEEEecccc--ccccccccccceeeecCceEEEeccc
Q 013822 78 -DGEIGELIAKVFEKGWEND---LITI--FDRKALYNELNFVKGMKLEWGLK--SPYFFTHKNKKECVLDGALVLIYDTK 149 (436)
Q Consensus 78 -~~~~~~li~~a~~~vg~~~---~I~v--~~g~~~~d~~~~i~G~~~d~g~~--~p~~~~~~~~~~~~l~~p~Il~~d~~ 149 (436)
.+.|+++.++|+.++...+ .|.| ..|+++. +|.+-+|+.+++.+- +| ..++||+||+-|+.
T Consensus 170 ~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~-dSfLDeGFlL~K~igv~qp----------kriena~iLIANT~ 238 (527)
T KOG0363|consen 170 DKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLE-DSFLDEGFLLDKKIGVNQP----------KRIENAKILIANTP 238 (527)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccc-cccccccceeccccCCCCc----------ccccccceEEecCC
Confidence 5579999999999985443 3554 3677876 488889998887542 33 26889999988764
Q ss_pred cC--------------CH-----------HHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCC
Q 013822 150 IS--------------NS-----------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 204 (436)
Q Consensus 150 i~--------------~~-----------~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 204 (436)
.+ +. +.++..++++.++|.+.+|-.+-|.+...++|.. .+|++|..++|
T Consensus 239 mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~d------agi~aIEHADF 312 (527)
T KOG0363|consen 239 MDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFAD------AGIMAIEHADF 312 (527)
T ss_pred CcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhh------cCcceeecccc
Confidence 22 11 2467788999999999998888888888887764 36899999988
Q ss_pred ccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc
Q 013822 205 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 281 (436)
Q Consensus 205 ~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s 281 (436)
.. +|||+..|||.++|. |++++..+||+|+.++ ++++++.-|.||+-
T Consensus 313 dG-----iERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGed~li~FSGv~~-------------------- 362 (527)
T KOG0363|consen 313 DG-----IERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL-------------------- 362 (527)
T ss_pred hh-----HHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCccceeeeccccc--------------------
Confidence 77 799999999999996 9999999999999864 89999999999864
Q ss_pred HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHHhcCC-ChhHHHHH
Q 013822 282 DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGV 359 (436)
Q Consensus 282 ~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~-gvV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~ 359 (436)
|..|||++||+|++.++|.||++|||||+.....++ .+|.|||++||.++..+.+++.. +|++..++
T Consensus 363 -----------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~Ai 431 (527)
T KOG0363|consen 363 -----------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAI 431 (527)
T ss_pred -----------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHH
Confidence 345999999999999999999999999999988887 49999999999999999999875 99999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013822 360 QIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 435 (436)
Q Consensus 360 ~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~ 435 (436)
++|++||.++|.+||.|||||+.++ ++||+ .+..++|+|.++|++.||.+.||+|.+.||++.+.+|.|+|.+|||
T Consensus 432 eAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilr 511 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILR 511 (527)
T ss_pred HHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHh
Confidence 9999999999999999999999999 99997 3678999999999999999999999999999999999999999997
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-59 Score=452.50 Aligned_cols=388 Identities=20% Similarity=0.224 Sum_probs=328.7
Q ss_pred ccccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCC------
Q 013822 7 IYLFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT--TFEEIAQVGTTAANG------ 77 (436)
Q Consensus 7 ~~~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~--~~~~l~~vA~ts~~~------ 77 (436)
+-+||||||||+|||+||..+.+|++ |+||+.|...|+.|....+++|++++.|++ |++.|.+-|+||+|+
T Consensus 94 ~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~ 173 (534)
T KOG0358|consen 94 SEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQY 173 (534)
T ss_pred ccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhh
Confidence 35899999999999999999999999 999999999999999999999999999986 667799999999873
Q ss_pred chhHHHHHHHHHHhccc-C-------Cceee--ecCCCccceeEEeeeEEEecccc---cccccccccccee--eecCce
Q 013822 78 DGEIGELIAKVFEKGWE-N-------DLITI--FDRKALYNELNFVKGMKLEWGLK---SPYFFTHKNKKEC--VLDGAL 142 (436)
Q Consensus 78 ~~~~~~li~~a~~~vg~-~-------~~I~v--~~g~~~~d~~~~i~G~~~d~g~~---~p~~~~~~~~~~~--~l~~p~ 142 (436)
+..++.+.++|+.++-. + ..|++ +.|++.+ ++++++|++|++... .|..+...+...+ .++.|+
T Consensus 174 s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvd-Dte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 174 SSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVD-DTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred ccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccc-hhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCC
Confidence 55788999999998743 2 12444 3577764 699999999987654 3333333333333 335554
Q ss_pred ------EEEeccc-----cCCH-HHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhh
Q 013822 143 ------VLIYDTK-----ISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKA 210 (436)
Q Consensus 143 ------Il~~d~~-----i~~~-~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~ 210 (436)
|++.|-. ++.. +.+++++++++++|+++++++++|=.++++.|+.|.+.. ++|++||. ..++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~k-lkimvikd-----ieRe 326 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVIKD-----IERE 326 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHh-CcEEEEcc-----ccHh
Confidence 3333311 1111 357788999999999999999999988888888776654 78999995 3457
Q ss_pred HHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE-E---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHH
Q 013822 211 IMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-A---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKD 286 (436)
Q Consensus 211 ~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~-i---~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~ 286 (436)
++|.+|+.+|++++++ ++.++++.||+++.++ + ++.+++-+.|+.++
T Consensus 327 diefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~------------------------ 377 (534)
T KOG0358|consen 327 DIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA------------------------ 377 (534)
T ss_pred hHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEEEEEeecC------------------------
Confidence 8999999999999997 7889999999999985 3 45578888887664
Q ss_pred HHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHHHHH
Q 013822 287 RLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQN 364 (436)
Q Consensus 287 Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~~a~ 364 (436)
|..++|++||++...++|.+|++|||||++|+.++.. .+||||+.||.++..|..++.. .|.+.|++++|++
T Consensus 378 ------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~ 451 (534)
T KOG0358|consen 378 ------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFAD 451 (534)
T ss_pred ------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 5789999999999999999999999999999999975 8999999999999999998875 8899999999999
Q ss_pred HHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 365 ALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 365 AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
|||.+|.+||+|||++|..+ .+||+ ++..+.|+|+++|.+.||++..|+.|+.|-.++++.|+|...+||+|
T Consensus 452 AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKI 527 (534)
T KOG0358|consen 452 ALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKI 527 (534)
T ss_pred HHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999 88987 46689999999999999999999999999999999999999999987
No 38
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-56 Score=437.74 Aligned_cols=373 Identities=15% Similarity=0.138 Sum_probs=319.5
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcC------Cch
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKIT--TFEEIAQVGTTAAN------GDG 79 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~--~~~~l~~vA~ts~~------~~~ 79 (436)
+|||||||++||+++|.++..+++ |+||+.+++.|.+|++.++..|++++.|++ +...+.++...+.. .++
T Consensus 89 vgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~ 168 (527)
T KOG0364|consen 89 VGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSD 168 (527)
T ss_pred ccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcc
Confidence 799999999999999999999999 999999999999999999999999988876 55567777655543 244
Q ss_pred hHHHHHHHHHHhcccC-Cc-ee------ee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccc
Q 013822 80 EIGELIAKVFEKGWEN-DL-IT------IF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK 149 (436)
Q Consensus 80 ~~~~li~~a~~~vg~~-~~-I~------v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~ 149 (436)
..+++..+|+++++.+ |. +. ++ +|+.++ ++++++|+.+.+...||.| +..++||+|+++|++
T Consensus 169 ~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~-~s~vl~Gv~~nkdv~Hpkm-------rr~IenprivLlD~~ 240 (527)
T KOG0364|consen 169 LICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLE-DSCVLKGVMINKDVTHPKM-------RRAIENPRIVLLDCP 240 (527)
T ss_pred hhhhHHHHHHHHhhhccCceechhhhccccccCccccc-ccceecceeeccccCcHHH-------HHHhhcCcEEEecCC
Confidence 6788889999999865 32 32 33 577776 5999999999999999965 347899999999987
Q ss_pred cCC------------------------HHHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCc
Q 013822 150 ISN------------------------SNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLA 205 (436)
Q Consensus 150 i~~------------------------~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~ 205 (436)
+.+ .+++..+++.+..-.-.+|+..+++++.|.++|..++ +.+++
T Consensus 241 LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~------iT~~r----- 309 (527)
T KOG0364|consen 241 LEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKAN------ITAIR----- 309 (527)
T ss_pred ccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcC------chhhh-----
Confidence 642 1234445555554443355555699999999998775 45554
Q ss_pred cchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCcee-eeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhccc
Q 013822 206 EDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 281 (436)
Q Consensus 206 ~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~-a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s 281 (436)
+.||.+..|++.+||++++++ ++|+...+.|. |+.++ ++++.|+||..|.+|++
T Consensus 310 r~rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pka----------------- 367 (527)
T KOG0364|consen 310 RLRKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKA----------------- 367 (527)
T ss_pred hhhccccchhhhhcCceeccC-----hhhCchhccCcccceeeeeccCchhhhhhhhcCCCcc-----------------
Confidence 578999999999999999997 99999999996 88886 46778999999999986
Q ss_pred HHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHH
Q 013822 282 DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGV 359 (436)
Q Consensus 282 ~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~ 359 (436)
|||++||+|..+++|.+|.+.||+.++|+.+-+. +||||||+||.+|+.|.+.+.. ++-+|+.|
T Consensus 368 --------------Ctillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY 433 (527)
T KOG0364|consen 368 --------------CTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPY 433 (527)
T ss_pred --------------eEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccch
Confidence 9999999999999999999999999999998875 9999999999999999886654 88999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013822 360 QIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNA 435 (436)
Q Consensus 360 ~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~---~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~ 435 (436)
.+++.||+.+||+|++|||.|+... ..+++ .+...||+|..+|.++||.+.++|+|..||.+..++|++.|+++||
T Consensus 434 ~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLR 513 (527)
T KOG0364|consen 434 GAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLR 513 (527)
T ss_pred hhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999887 77765 3457899999999999999999999999999999999999999999
Q ss_pred C
Q 013822 436 I 436 (436)
Q Consensus 436 i 436 (436)
|
T Consensus 514 I 514 (527)
T KOG0364|consen 514 I 514 (527)
T ss_pred h
Confidence 7
No 39
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-55 Score=428.64 Aligned_cols=372 Identities=18% Similarity=0.233 Sum_probs=314.6
Q ss_pred cccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCC------chh
Q 013822 8 YLFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANG------DGE 80 (436)
Q Consensus 8 ~~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~------~~~ 80 (436)
..||||||+|+|+++||++|..++. |+||..|..||+.|.+.++++|+..+.++ +++.|..+|.+|.+. .+.
T Consensus 86 ~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~ 164 (520)
T KOG0359|consen 86 ITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV-DRETLKDVARTSLRTKVHAELADV 164 (520)
T ss_pred ccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccch-hHHHHHHHHHHhhcCcccHHHHhH
Confidence 3699999999999999999999999 99999999999999999999999777666 467899999999874 234
Q ss_pred HHHHHHHHHHhcc-cCCcee---ee---cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCH
Q 013822 81 IGELIAKVFEKGW-ENDLIT---IF---DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS 153 (436)
Q Consensus 81 ~~~li~~a~~~vg-~~~~I~---v~---~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~ 153 (436)
+.+++++|+..+. .+..|. |+ +.+....+..+++|+++|||-+||.|++ .++|++||++|.++++.
T Consensus 165 lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~-------~~e~a~iL~~NvSLEYE 237 (520)
T KOG0359|consen 165 LTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPR-------RVEDAYILICNVSLEYE 237 (520)
T ss_pred hHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCccccc-------chhceEEEEeecccccc
Confidence 6777788887776 333232 22 3333344688999999999999998754 78999999999876532
Q ss_pred H-----------------------H-HHHHHHHHHHcC---CCEEEE-ecCcchhhHHHHHHhccCCCccEEEEEeCCCc
Q 013822 154 N-----------------------V-IRQASLPCMMQG---QSLLVV-AEDVENEVLGDIATDFTCTTEKVCIIKAAGLA 205 (436)
Q Consensus 154 ~-----------------------~-i~~~le~i~~~~---~~lvii-~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~ 205 (436)
+ + +.+.+.+|.+-+ +.+|+| +++||+..|..|+.+ +|+|+|++
T Consensus 238 K~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~------gIlaLRRA--- 308 (520)
T KOG0359|consen 238 KPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKS------GILALRRA--- 308 (520)
T ss_pred ccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhc------chHHHHHH---
Confidence 1 1 122344444443 346666 569999999988866 47888865
Q ss_pred cchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccH
Q 013822 206 EDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD 282 (436)
Q Consensus 206 ~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~---i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~ 282 (436)
++++||||.++|||..+++ ++|++|++||+|+.|. +++++|||+++|++|.+
T Consensus 309 --KRRNmERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S------------------ 363 (520)
T KOG0359|consen 309 --KRRNMERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSS------------------ 363 (520)
T ss_pred --hhhhHHHHHHhhccceecc-----cccCChhhccccceeEEeeccceeeEeeecCCCCcc------------------
Confidence 3357999999999999987 8999999999999985 78999999999999975
Q ss_pred HHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHHH
Q 013822 283 KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQ 360 (436)
Q Consensus 283 ~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~ 360 (436)
|||+++|++.+.+..+|+.++|+|++++++++++ ++||+|+.|..++++|...... +++.++|++
T Consensus 364 -------------~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~ 430 (520)
T KOG0359|consen 364 -------------VTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVK 430 (520)
T ss_pred -------------eEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHH
Confidence 9999999999999999999999999999999997 8999999999999999976664 899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcC-CCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013822 361 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQD-SSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKN 434 (436)
Q Consensus 361 ~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL 434 (436)
+|++||..+|++|++|+|+|+.+. .+|.+.. ....|+|+.+|+..+....||||++.||++.|.+++-+|+.+|
T Consensus 431 afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlL 506 (520)
T KOG0359|consen 431 AFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLL 506 (520)
T ss_pred HHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999999999888 7775532 2356999999999999999999999999999999999999887
No 40
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-53 Score=420.25 Aligned_cols=377 Identities=17% Similarity=0.221 Sum_probs=324.7
Q ss_pred ccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHh-hcccCC--CHHHHHHHHHHhcCC------c
Q 013822 9 LFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDC-QARKIT--TFEEIAQVGTTAANG------D 78 (436)
Q Consensus 9 ~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~-~s~~i~--~~~~l~~vA~ts~~~------~ 78 (436)
+|||||+|+++|++||+.+.+|+. ++||+.|++||+.|+..+++++++ .+.|++ ..+-|.++|++++.+ .
T Consensus 89 vgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds 168 (545)
T KOG0360|consen 89 VGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDS 168 (545)
T ss_pred ccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccch
Confidence 699999999999999999999999 999999999999999999999986 567776 457799999988753 6
Q ss_pred hhHHHHHHHHHHhccc---CC-------ceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEe
Q 013822 79 GEIGELIAKVFEKGWE---ND-------LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIY 146 (436)
Q Consensus 79 ~~~~~li~~a~~~vg~---~~-------~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~ 146 (436)
++|++++++|+..+.. +| .+.|- .|.+.. +|.++.|+.++....+..|+ ..+.|++|.+.
T Consensus 169 ~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~-eS~l~~GyaLnc~~asq~m~-------~~i~~~Kiacl 240 (545)
T KOG0360|consen 169 DFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQI-ESMLLPGYALNCSVASQMMP-------LRIKNAKIACL 240 (545)
T ss_pred HHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccch-hheeecceeeeccHhhhccc-------cccccceeeeE
Confidence 7899999999987632 22 23342 455554 69999999999988776654 46779999999
Q ss_pred cccc-------------CCHHHH-----------HHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeC
Q 013822 147 DTKI-------------SNSNVI-----------RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAA 202 (436)
Q Consensus 147 d~~i-------------~~~~~i-----------~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~ 202 (436)
|+.+ ++++++ ++.++++..+|+++++++++|||..+.+|+.. +++|||+
T Consensus 241 d~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~vea------gamAVrR- 313 (545)
T KOG0360|consen 241 DFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEA------GAMAVRR- 313 (545)
T ss_pred ecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHc------chhhhHH-
Confidence 9753 455432 34467788999999999999999999999975 4788874
Q ss_pred CCccchhhHHHHHHHHhCCeEeeCCCCCC-cCCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhh
Q 013822 203 GLAEDRKAIMEDLAILTGGQVLTGGSGMN-STYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKL 278 (436)
Q Consensus 203 ~~~~~r~~~le~la~~tG~~~~s~~~~~~-~~~~~~~~LG~a~~v---~i~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~ 278 (436)
.++++|++||++||++++++...+. -+.+++.++|+|++| ++++|+++.+.+.+..
T Consensus 314 ----~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~---------------- 373 (545)
T KOG0360|consen 314 ----CKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT---------------- 373 (545)
T ss_pred ----HHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc----------------
Confidence 6789999999999999999843322 245678899999997 4889999999875433
Q ss_pred cccHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHH
Q 013822 279 STSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQK 356 (436)
Q Consensus 279 ~~s~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~ 356 (436)
.|.|++||++++.++|++|++|||||++|..++++ +|||||++|.+++-+|+.|+.. ..+||
T Consensus 374 ----------------~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~ 437 (545)
T KOG0360|consen 374 ----------------SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQ 437 (545)
T ss_pred ----------------eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHH
Confidence 48999999999999999999999999999999998 9999999999999999999986 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-----------CCCCeeEeCCCCccccccccCcccccccHHHHHH
Q 013822 357 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ-----------DSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFA 424 (436)
Q Consensus 357 ~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~~-----------~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~ 424 (436)
.++..|++||..+|++|+-||+.|+.++ .++|.. ...|+|+|+.+|++.|.++.|+++|..+|...++
T Consensus 438 laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk 517 (545)
T KOG0360|consen 438 LAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLK 517 (545)
T ss_pred HHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhH
Confidence 9999999999999999999999999999 988862 1358999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 013822 425 KATSMISLKNAI 436 (436)
Q Consensus 425 ~A~~~a~~iL~i 436 (436)
.|+++|..+|||
T Consensus 518 ~ateaaitiLri 529 (545)
T KOG0360|consen 518 FATEAAITILRI 529 (545)
T ss_pred HHHHhhhhhcch
Confidence 999999999997
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-52 Score=393.80 Aligned_cols=289 Identities=19% Similarity=0.201 Sum_probs=266.5
Q ss_pred cccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHH
Q 013822 8 YLFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIA 86 (436)
Q Consensus 8 ~~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~ 86 (436)
.+|||||.+++|++.+++++.+++. |+||..|..||+.|...++++|++.+.+++
T Consensus 88 eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e------------------------ 143 (400)
T KOG0357|consen 88 EIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE------------------------ 143 (400)
T ss_pred hhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc------------------------
Confidence 4899999999999999999999999 999999999999999999999999887765
Q ss_pred HHHHhcccCCceeeecCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHc
Q 013822 87 KVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQ 166 (436)
Q Consensus 87 ~a~~~vg~~~~I~v~~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~ 166 (436)
|.++++.++++
T Consensus 144 ---------------------------------------------------------------------f~emi~~vK~~ 154 (400)
T KOG0357|consen 144 ---------------------------------------------------------------------FEEMIQQIKET 154 (400)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHhh
Confidence 56778899999
Q ss_pred CCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEE
Q 013822 167 GQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV 246 (436)
Q Consensus 167 ~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v 246 (436)
|.+++||+|++||+|-++|..|++. |||+.|- -++|-||++|||+++++ |++++++.||+|+.|
T Consensus 155 ga~l~icqwgfddeanhll~~n~lp------avrwVGG-----pEiEliAiaT~grIVpr-----F~eL~~~kLG~aglV 218 (400)
T KOG0357|consen 155 GANLAICQWGFDDEANHLLLQNNLP------AVRWVGG-----PEIELIAIATGGRIVPR-----FSELTAEKLGFAGLV 218 (400)
T ss_pred CCcEEEEecccCchhhhHHhhcCCC------ceeecCC-----cceEEEEeecCCeeecc-----HhhhCHhhccccceE
Confidence 9999999999999999999999865 8888652 24899999999999997 999999999999998
Q ss_pred E-E----ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHH
Q 013822 247 I-A----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHA 321 (436)
Q Consensus 247 ~-i----~~~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a 321 (436)
+ + ++|+..+++.|++.++ .||.|||++..+++|.||++|||||+
T Consensus 219 rE~sfgttkdkmlviEqc~nska-------------------------------VTifvRg~Nkmii~EakrslhdalCv 267 (400)
T KOG0357|consen 219 REISFGTTKDKMLVIEQCKNSKA-------------------------------VTIFVRGGNKMIIEEAKRSLHDALCV 267 (400)
T ss_pred EEEecccccceEEEEEecCCCce-------------------------------EEEEEecCcceeHHHHHHHhhhhHHH
Confidence 5 2 4778999999999865 79999999999999999999999999
Q ss_pred HHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh----cCCCC
Q 013822 322 VQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE----QDSSD 394 (436)
Q Consensus 322 ~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~~a~AL~~ip~~La~NaG~d~~~i-~~l~~----~~~~~ 394 (436)
+||.+++. +|+|||++|+.||-.+.+-+.. ++.+||++++|++||+.||..||+|+|++|.+. +.+++ ..+++
T Consensus 268 irnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~ 347 (400)
T KOG0357|consen 268 IRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPA 347 (400)
T ss_pred HHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcc
Confidence 99999985 9999999999999999877664 899999999999999999999999999999988 87765 35789
Q ss_pred eeEeCCCCccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 395 LGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 395 ~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
+|+|+.-..-.||.+.+|+||+.-|++.+..|+.++.|||+|
T Consensus 348 lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKi 389 (400)
T KOG0357|consen 348 LGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKI 389 (400)
T ss_pred cCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 999999888999999999999999999999999999999987
No 42
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-48 Score=384.81 Aligned_cols=379 Identities=17% Similarity=0.186 Sum_probs=307.4
Q ss_pred cccCCcchHHHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHHHHHhhccc-CCCHHHHHHHHHHhcC-----Cchh
Q 013822 8 YLFAGTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARK-ITTFEEIAQVGTTAAN-----GDGE 80 (436)
Q Consensus 8 ~~GDGTTt~vvLa~~ll~~~~~li~-G~~p~~I~~G~~~a~~~~~~~L~~~s~~-i~~~~~l~~vA~ts~~-----~~~~ 80 (436)
-+||||+.+++|+++||++|+++|. |++|.+|++||+.|...+++.|.++... +.|.++...+++++.+ +.++
T Consensus 95 ~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~ 174 (537)
T KOG0362|consen 95 EIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDF 174 (537)
T ss_pred hhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHH
Confidence 4799999999999999999999999 9999999999999999999999997643 2222222233333332 3778
Q ss_pred HHHHHHHHHHhcccCC-----ceeee--cCCCccceeEEeeeEEEeccccccccccccccce-eeecCce-EEEeccc--
Q 013822 81 IGELIAKVFEKGWEND-----LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKE-CVLDGAL-VLIYDTK-- 149 (436)
Q Consensus 81 ~~~li~~a~~~vg~~~-----~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~-~~l~~p~-Il~~d~~-- 149 (436)
+++++++|+.++.+.+ +|+|- .|++.+ +|.++.||+|++..... ++..+..+ ..+.+|+ +..|+.|
T Consensus 175 l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~-~S~Vv~GmVfkr~~eG~--v~~ak~arvAvf~cP~d~~~TEtkgT 251 (537)
T KOG0362|consen 175 LTKLVAKACVSILPLMSFNVDNIRVCKILGGGLE-DSCVVCGMVFKRDPEGE--VKSAKDARVAVFACPFDIAQTETKGT 251 (537)
T ss_pred HHHHHHHHHHhhcccccccccceEEEEEecCCcc-cceeeEEEEeccccCCc--ccccccceeEEEecCCCcccccCcce
Confidence 9999999999998763 34442 677776 59999999999876532 12222222 2345553 3344443
Q ss_pred --cCCHHHHH-----------HHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHH
Q 013822 150 --ISNSNVIR-----------QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLA 216 (436)
Q Consensus 150 --i~~~~~i~-----------~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la 216 (436)
|+++++++ ..++.+...|.++++..+.+++.+|+ +.|+ ++|+++|.++ +.+|.||+
T Consensus 252 vLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lh--flnk----y~ImVlqi~S-----k~eLrrlc 320 (537)
T KOG0362|consen 252 VLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLH--FLNK----YKIMVLQINS-----KFDLRRLC 320 (537)
T ss_pred eeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhh--hhcc----ccEEEEEecc-----HhhHHHHH
Confidence 56665544 34666778899999999999999998 4454 6799999874 56799999
Q ss_pred HHhCCeEeeCCCCCCcCCCCCCCceeeeEE---EEecceEEEEcC-CCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhc
Q 013822 217 ILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGG-SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLS 292 (436)
Q Consensus 217 ~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v---~i~~~~~~~~~~-~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rla~l~ 292 (436)
+..||++.++ +..+.++.+|+|++| +++++.+++|.. ++.
T Consensus 321 rtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~------------------------------- 364 (537)
T KOG0362|consen 321 RTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTG------------------------------- 364 (537)
T ss_pred HHcCCccchh-----ccCCCCccccccceeeeeecCCceEEEEeeccCC-------------------------------
Confidence 9999999997 788888899999988 467777766654 322
Q ss_pred CCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHH
Q 013822 293 GGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAA 370 (436)
Q Consensus 293 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~~~~-~~~~~~g~~~~a~AL~~ip 370 (436)
+.++||++||+|+..+|+.||.++|++++.|...+++ ++||+|++|+++++.|.++... +|.+|++|..|++||+..|
T Consensus 365 ~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~P 444 (537)
T KOG0362|consen 365 TRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLP 444 (537)
T ss_pred CceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhcccc
Confidence 3578999999999999999999999999999999986 9999999999999999998774 8999999999999999999
Q ss_pred HHHHHhcCCChHHH-HHHHh--cCCCCeeEeCCCC-ccccccccCcccccccHHHHHHHHHHHHHHHhcC
Q 013822 371 YLIASNAGVDGSVI-DKLLE--QDSSDLGYNPARG-NYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI 436 (436)
Q Consensus 371 ~~La~NaG~d~~~i-~~l~~--~~~~~~G~d~~~g-~~~d~~~~gI~Dp~~v~~~al~~A~~~a~~iL~i 436 (436)
++||+|||++..++ +++.. .+..+.|+|+... ...|+.++||||-+.+|.++|+.|+++|.++|++
T Consensus 445 ktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~v 514 (537)
T KOG0362|consen 445 KTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTV 514 (537)
T ss_pred HhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeeh
Confidence 99999999999999 98876 3345678888776 5899999999999999999999999999999874
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.96 E-value=1.7e-28 Score=230.45 Aligned_cols=192 Identities=26% Similarity=0.337 Sum_probs=164.5
Q ss_pred HHHHHHHHHhcC-----CchhHHHHHHHHHHhccc------CCceeee--cCCCccceeEEeeeEEEecccccccccccc
Q 013822 65 EEIAQVGTTAAN-----GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHK 131 (436)
Q Consensus 65 ~~l~~vA~ts~~-----~~~~~~~li~~a~~~vg~------~~~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~ 131 (436)
++|.++|++|.+ +++.+++++++|+..+++ .+.|.|+ +|++.. ++++++|++|+++|.||+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~-ds~li~Gv~~~~~~~~~~m~--- 77 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLE-DSELVVGVVFDKGYASPYMP--- 77 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChh-hceeEeeEEEeccccCCCCC---
Confidence 468899999998 688899999999999987 3567775 465555 69999999999999999883
Q ss_pred ccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhH
Q 013822 132 NKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 211 (436)
Q Consensus 132 ~~~~~~l~~p~Il~~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~ 211 (436)
..++||+|++++++|+. ++++.++|++.++++|..+ +|++|++ .++++
T Consensus 78 ----~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~ 125 (209)
T cd03333 78 ----KRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRR-----VKKED 125 (209)
T ss_pred ----eEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEe-----CCHHH
Confidence 47899999999999886 6666677999999988864 4889986 45678
Q ss_pred HHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHH
Q 013822 212 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRL 288 (436)
Q Consensus 212 le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~i~~---~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl 288 (436)
|+|||++|||+++++ ++++++++||+|+.|++.+ ++++++.+|+.+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999997 7888889999999997653 458899887654
Q ss_pred hhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHc
Q 013822 289 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 328 (436)
Q Consensus 289 a~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~ 328 (436)
+.|||++||+|+.+++|.||+++||++++++++++
T Consensus 175 -----~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 -----KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 46999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.94 E-value=1.6e-25 Score=216.88 Aligned_cols=198 Identities=11% Similarity=0.158 Sum_probs=162.6
Q ss_pred chhHHHHHHHHHHhcccC----------Cceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEE
Q 013822 78 DGEIGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLI 145 (436)
Q Consensus 78 ~~~~~~li~~a~~~vg~~----------~~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~ 145 (436)
.+.|++++++|+..+..+ ..|.|+ +|++.. ++++++|++|++.+.++.|+ ..++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~-dS~li~Gvvi~k~~~~~~m~-------~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPS-DSEVVDGVVFTKNVAHKRMP-------SKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHH-HcEEEeeEEEeCCCCCccCC-------cccCCCcEEE
Confidence 467999999999888522 125554 677775 69999999999999887664 3788999999
Q ss_pred eccccCCH-----------------HHHHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccch
Q 013822 146 YDTKISNS-----------------NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR 208 (436)
Q Consensus 146 ~d~~i~~~-----------------~~i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r 208 (436)
++++++.. +.+...+++++..|.+++++.++|++.++++|..+ +|++++++ +
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~v-----~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLNV-----K 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEec-----C
Confidence 99876432 13456788899999999999999999999988875 47899865 4
Q ss_pred hhHHHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEE---ec-----ceEEEEcCCCChhhHHHHHHHHHHHhhhcc
Q 013822 209 KAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---TM-----DNVVIIGGSGELVDIQERCEQLRSTIKLST 280 (436)
Q Consensus 209 ~~~le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~i---~~-----~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~ 280 (436)
+++|+|||++|||+++++. .++++++.||+|+.|++ ++ ++++||++|+.+.
T Consensus 161 ~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~----------------- 219 (261)
T cd03334 161 PSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKEL----------------- 219 (261)
T ss_pred HHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCc-----------------
Confidence 5789999999999999962 34678889999999874 33 4799999997653
Q ss_pred cHHHHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHHHHHHcC
Q 013822 281 SDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 329 (436)
Q Consensus 281 s~~l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~g 329 (436)
.+||+|||+|++.++|.||.++||+++++++..+.
T Consensus 220 --------------~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 220 --------------GCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred --------------eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 59999999999999999999999999999997765
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2.2e-08 Score=112.45 Aligned_cols=203 Identities=12% Similarity=0.171 Sum_probs=141.5
Q ss_pred HHHHHHHHHHhcccC----------Cceeee--cCCCccceeEEeeeEEEeccccccccccccccceeeecCceEEEecc
Q 013822 81 IGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT 148 (436)
Q Consensus 81 ~~~li~~a~~~vg~~----------~~I~v~--~g~~~~d~~~~i~G~~~d~g~~~p~~~~~~~~~~~~l~~p~Il~~d~ 148 (436)
+..++.+|...+.++ +.+.|+ .++.. .+++++.|+++.+-..|-.|. .++++|+|++..+
T Consensus 337 i~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~-~dS~vi~Gvv~sKn~~~k~M~-------~~~e~prilll~g 408 (1598)
T KOG0230|consen 337 ITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSR-VDSEVIKGVVCSKNVAHKRMA-------TKYENPRILLLGG 408 (1598)
T ss_pred HHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCc-ccceeeeEEEeecchhhhhhh-------hhccCCceEEEec
Confidence 444455555555432 245554 55664 469999999999887765554 4788899998876
Q ss_pred ccC---------CHHH--------HHHHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhH
Q 013822 149 KIS---------NSNV--------IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 211 (436)
Q Consensus 149 ~i~---------~~~~--------i~~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~ 211 (436)
.|. +.+. +...+..+...+-+++.+.+++++.|..+|.... +.-++ +....-
T Consensus 409 ~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~---I~lvl--------nvK~s~ 477 (1598)
T KOG0230|consen 409 PLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKG---ISLVL--------NVKRSL 477 (1598)
T ss_pred chhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccC---eEEEE--------eccHHH
Confidence 532 2222 2233444433343477888999999998876432 21222 234456
Q ss_pred HHHHHHHhCCeEeeCCCCCCcCCCCCCCceeeeEEEEe----c----ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHH
Q 013822 212 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT----M----DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDK 283 (436)
Q Consensus 212 le~la~~tG~~~~s~~~~~~~~~~~~~~LG~a~~v~i~----~----~~~~~~~~~~~~~~i~~r~~~l~~~l~~~~s~~ 283 (436)
|+||+++|||.++++ ++.++...||+|..+++. + ...+||+||+.+..
T Consensus 478 leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG------------------- 533 (1598)
T KOG0230|consen 478 LERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLG------------------- 533 (1598)
T ss_pred HHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCC-------------------
Confidence 999999999999986 666888899999998653 1 23589999987753
Q ss_pred HHHHHhhhcCCeEEEEEccCchhHHHHHHHHHHHHHHHHH-HHHHcCCCCCchHHH
Q 013822 284 LKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ-AAKEEGIVPGSGVAL 338 (436)
Q Consensus 284 l~~Rla~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k-~al~~gvV~GGGa~e 338 (436)
|||++||++..+++++|+-+.-++-++= .+++.-|+.-=|+..
T Consensus 534 ------------~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 534 ------------CTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred ------------ceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 8999999999999999999998888875 446656766555543
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.31 Score=52.14 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCC-EEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHH-HHHHHHhCCeEeeCCCCCCcC
Q 013822 156 IRQASLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNST 233 (436)
Q Consensus 156 i~~~le~i~~~~~~-lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~l-e~la~~tG~~~~s~~~~~~~~ 233 (436)
+..+++.+.+.|.+ +++++++|+|.++++|..+ .|++++++. ++++ ++|+.+|||++++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~v~-----~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGRRVK-----KEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecceec-----chhhHHHHHHccCceEEee-----cc
Confidence 44566677788999 8888999999999988865 478887664 3457 79999999999996 89
Q ss_pred CCCCCCcee--eeEEEE---ecceEEEEcCCCC
Q 013822 234 YFVPLKLGS--CKRVIA---TMDNVVIIGGSGE 261 (436)
Q Consensus 234 ~~~~~~LG~--a~~v~i---~~~~~~~~~~~~~ 261 (436)
+.++..+|. |+.++. ++++++++.+|.+
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~ 355 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERKA 355 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhhh
Confidence 999999999 999864 4666777777764
No 47
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=50.12 E-value=6.5 Score=42.17 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=49.7
Q ss_pred cCCCEEEEecCcch-----hhHHHHHHhccCCC----ccEEEEEeCCCccchhhHHHHHHHHhCCeEeeC
Q 013822 166 QGQSLLVVAEDVEN-----EVLGDIATDFTCTT----EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 226 (436)
Q Consensus 166 ~~~~lvii~~~i~~-----~al~~l~~n~~~~~----~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~ 226 (436)
...|+.|..+++++ +++..++.++.++. .++++++.| +++.+.++|+|..+.++.++...
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 34588899999988 88888888876653 488999888 99999999999999999887654
No 48
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=48.78 E-value=67 Score=25.62 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCe
Q 013822 158 QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 222 (436)
Q Consensus 158 ~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~ 222 (436)
+.++.+.+....+|++++|+++.....+..--.+..++++=| |+ +++|-++||-.
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V--~s--------~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF--KS--------KHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE--CC--------HHHHHHHhCCC
Confidence 345555455567999999999987765543222222444443 22 67788888854
No 49
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=48.56 E-value=40 Score=36.22 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=29.9
Q ss_pred HHHHHhcccCCceeeecCCCccc-eeEEeeeEEEeccccccccccc
Q 013822 86 AKVFEKGWENDLITIFDRKALYN-ELNFVKGMKLEWGLKSPYFFTH 130 (436)
Q Consensus 86 ~~a~~~vg~~~~I~v~~g~~~~d-~~~~i~G~~~d~g~~~p~~~~~ 130 (436)
++++..++.++.+.++++....+ .+.-+.|..++.+|+.|+|+.+
T Consensus 178 ~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~ 223 (533)
T PTZ00212 178 KDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILE 223 (533)
T ss_pred HHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEe
Confidence 45566666666666765544433 4556668889999999988643
No 50
>smart00574 POX domain associated with HOX domains.
Probab=46.17 E-value=41 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHH
Q 013822 307 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDK 347 (436)
Q Consensus 307 ~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~ 347 (436)
.|+|++++++--..-++..+.+- .|+|+|++-.+.+-+|+.
T Consensus 85 mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a 126 (140)
T smart00574 85 MLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKT 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 78888888888888887777764 789999988888777754
No 51
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=37.84 E-value=68 Score=34.40 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=29.5
Q ss_pred HHHHHhcccCCceeeecCCCccceeEEe--eeEEEeccccccccccc
Q 013822 86 AKVFEKGWENDLITIFDRKALYNELNFV--KGMKLEWGLKSPYFFTH 130 (436)
Q Consensus 86 ~~a~~~vg~~~~I~v~~g~~~~d~~~~i--~G~~~d~g~~~p~~~~~ 130 (436)
++++..++.++.+.++.+... +.+++. .|..++.+|+.|+|+.+
T Consensus 167 ~~~~s~l~~~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~ 212 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLLE 212 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEEe
Confidence 455555666666666654444 347777 48899999998888643
No 52
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=34.47 E-value=62 Score=28.41 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHh
Q 013822 307 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL 348 (436)
Q Consensus 307 ~l~E~~~~~~DAl~a~k~al~~g-vV~GGGa~e~~~s~~L~~~ 348 (436)
.|+|++++++--..=++..+.+- -|.|.|++-.+.+-+|+..
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqam 127 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAM 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 68888888887777777666664 7889999988887777543
No 53
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=28.22 E-value=1.7e+02 Score=23.04 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCEEEEec-CcchhhHHHHHHhccCCCccEEEEEeCC-CccchhhHHHHHHHHhCCeEeeC
Q 013822 158 QASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLTG 226 (436)
Q Consensus 158 ~~le~i~~~~~~lvii~~-~i~~~al~~l~~n~~~~~~~i~avk~~~-~~~~r~~~le~la~~tG~~~~s~ 226 (436)
..|......-.|++.+.+ ++++..+..+-..-.. -.++=||..+ ....+++..+.|+..|||.++..
T Consensus 7 ~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~--~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 7 KFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEK--HELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHH--HSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHh--CCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 345555455578888876 7888766543311111 1356666654 34446688899999999999864
No 54
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=24.73 E-value=3.6e+02 Score=22.09 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCEEEEec-CcchhhHHHHHHhccCCCccEEEEEeC-CCccchhhHHHHHHHHhCCeEeeC
Q 013822 157 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAA-GLAEDRKAIMEDLAILTGGQVLTG 226 (436)
Q Consensus 157 ~~~le~i~~~~~~lvii~~-~i~~~al~~l~~n~~~~~~~i~avk~~-~~~~~r~~~le~la~~tG~~~~s~ 226 (436)
..+|......=.|+|.|.+ ++++..+..+-..-... ..+=||.. ..++.|++..+.||..||+.++..
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~h--ELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~ 77 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHH--ELIKVKIATEDRETKTLIVEAIVRETGACNVQV 77 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHC--CcEEEEecCCChhHHHHHHHHHHHHHCCEEEee
Confidence 3455555444579998875 78888776443111111 12333332 234557788899999999998863
No 55
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=24.09 E-value=1.6e+02 Score=29.24 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=27.0
Q ss_pred HHHHhhcc--CCChHHHHHHHHHHHHHHHHHHHhhc
Q 013822 25 DEAFKALG--RANLTGLTQGFRMAADAVVRNLDCQA 58 (436)
Q Consensus 25 ~~~~~li~--G~~p~~I~~G~~~a~~~~~~~L~~~s 58 (436)
++-++... -+||.++..|+..|++..++-+.+..
T Consensus 296 ed~e~~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~ 331 (360)
T KOG2144|consen 296 EDIEKDYEEGELHPGDLKKGLEKALNELLQPIREEF 331 (360)
T ss_pred HHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445 59999999999999999999988644
No 56
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=23.48 E-value=1.3e+02 Score=24.63 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCcccccccHHHHHHHHHHHHH
Q 013822 371 YLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMIS 431 (436)
Q Consensus 371 ~~La~NaG~d~~~i-~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~v~~~al~~A~~~a~ 431 (436)
..|..|.++.-..+ ++|.+ ++|+| +++-++...||||...-.+++..+..-+.
T Consensus 32 ~~L~~s~~frNP~i~ekLi~----~~~Id----e~gTn~p~~i~dP~~~~~~~y~e~L~k~Q 85 (96)
T PF07818_consen 32 DRLQNSKSFRNPSILEKLIE----FFGID----EYGTNFPKDIFDPHGFPEEDYYEELAKAQ 85 (96)
T ss_pred HHHHHccccCChHHHHHHHH----HcCCC----cccCCCChhhcCCCCCCHHHHHHHHHHHH
Confidence 45667777655556 77764 46776 46777788899999999999988766554
No 57
>PRK06683 hypothetical protein; Provisional
Probab=23.03 E-value=3e+02 Score=21.61 Aligned_cols=53 Identities=17% Similarity=0.048 Sum_probs=30.0
Q ss_pred HHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCe
Q 013822 160 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 222 (436)
Q Consensus 160 le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~ 222 (436)
++.+.+....+||+++|.++.....+..--....+++ +..+ ..++|..+||-.
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv--~~~~--------t~~eLG~A~G~~ 72 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPI--TKVE--------SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCE--EEEC--------CHHHHHHHhCCc
Confidence 4444444467999999999886654431111111233 3322 256788888854
No 58
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=22.31 E-value=1.4e+02 Score=25.25 Aligned_cols=61 Identities=18% Similarity=0.067 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCeEeeCCCCC-CcCCCC
Q 013822 158 QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFV 236 (436)
Q Consensus 158 ~~le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~~~s~~~~~-~~~~~~ 236 (436)
++.+.+.++++|++++..+..... -.+.+.+++..+|+.++..-.+. .+.+-.
T Consensus 3 ~~~~~L~~A~rP~il~G~g~~~~~--------------------------a~~~l~~lae~~~~Pv~~t~~~kg~i~~~h 56 (137)
T PF00205_consen 3 EAADLLSSAKRPVILAGRGARRSG--------------------------AAEELRELAEKLGIPVATTPMGKGVIPEDH 56 (137)
T ss_dssp HHHHHHHH-SSEEEEE-HHHHHTT--------------------------CHHHHHHHHHHHTSEEEEEGGGTTSSTTTS
T ss_pred HHHHHHHhCCCEEEEEcCCcChhh--------------------------HHHHHHHHHHHHCCCEEecCccccccCCCC
Confidence 456667788899998765432110 12458889999999988764332 122233
Q ss_pred CCCceeee
Q 013822 237 PLKLGSCK 244 (436)
Q Consensus 237 ~~~LG~a~ 244 (436)
+.++|..+
T Consensus 57 p~~~G~~g 64 (137)
T PF00205_consen 57 PLFLGYLG 64 (137)
T ss_dssp TTEEEESC
T ss_pred chhcccCC
Confidence 55566544
No 59
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=21.72 E-value=3e+02 Score=21.69 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=30.0
Q ss_pred HHHHHHcCCCEEEEecCcchhhHHHHHHhccCCCccEEEEEeCCCccchhhHHHHHHHHhCCe
Q 013822 160 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 222 (436)
Q Consensus 160 le~i~~~~~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~~~~r~~~le~la~~tG~~ 222 (436)
++.+.+....+||++.|.++.....+..--....+++ +.. ...++|..+||-.
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv--~~~--------~t~~eLG~A~G~~ 69 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI--VYI--------DTMKELGVMCGID 69 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE--EEe--------CCHHHHHHHHCCc
Confidence 4445445567999999999876654432111111233 221 1256788888854
No 60
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=21.65 E-value=42 Score=35.36 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhc
Q 013822 312 KLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQ 349 (436)
Q Consensus 312 ~~~~~DAl~a~k~al~~gvV~GGGa~e~~~s~~L~~~~ 349 (436)
+|.+.||+..+|++.+.=+|.|||+-+-.+...|..++
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~ 253 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFA 253 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHH
Confidence 46678999999988776699999998888888887664
No 61
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.34 E-value=2.5e+02 Score=20.87 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchhHHHHHHHH
Q 013822 34 ANLTGLTQGFRMAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKV 88 (436)
Q Consensus 34 ~~p~~I~~G~~~a~~~~~~~L~~~s~~i~~~~~l~~vA~ts~~~~~~~~~li~~a 88 (436)
.+|.++++.++.|-..+--=+.-..+|+.+.++....+...+ .++-.+.++|
T Consensus 4 asPv~LR~~lE~A~~La~~GIRFVpiPv~~dee~~~L~s~~~---~kLe~ma~~a 55 (61)
T PF07131_consen 4 ASPVDLRKALEMAHSLAHIGIRFVPIPVVTDEEFHTLSSQLS---QKLERMAAEA 55 (61)
T ss_pred ccHHHHHHHHHHHHHHHHcCceeeccccccHHHHHHHHHHHH---HHHHHHHHHH
Confidence 579999888888753333223334467777777766653332 2455555544
Done!