BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013823
(436 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 52/227 (22%)
Query: 207 HPST---FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLI 263
HP + ++ ++ +K+MI DD+ FLR ++Y G ++RGYLLYGPPG+GK+S +
Sbjct: 200 HPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFL 259
Query: 264 AAMANYLSVEM-----------KDRQN-----------------DGA--------SVGSN 287
A+A L ++ DR N D A VG +
Sbjct: 260 YALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGEVGFH 319
Query: 288 TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFK 347
+T SG+LN +DG+ SS DERII TTNH E++DPAL+RPGR+DV + T +
Sbjct: 320 ANVTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVR 377
Query: 348 VLASNYLG-----------IKGKSHSLFGEIEGLIQSTDVTPAEVAE 383
+ + + G I ++ ++GL +PA+ +
Sbjct: 378 EMFTRFYGHSPEMADDLSDIVCPKNTSMASLQGLFVMNKSSPADAVD 424
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 45/224 (20%)
Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270
++ ++ + + I+DD+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LSSVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 271 SVEM-----------KDRQNDGASVGSNT------------------------------K 289
+ DR N SV +
Sbjct: 248 GYSICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRELLPTENPLAYQGMGR 307
Query: 290 LTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVL 349
LT SG+LN +DG+ SS + RI+ TTN ER+DPAL+RPGR+D+ + +C+ +
Sbjct: 308 LTFSGLLNALDGVASS--EARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCSHWQLTQM 365
Query: 350 ASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELM--KADDA 391
+ + + + + L TD++ A+V M K D A
Sbjct: 366 FRRFYPQESAAEADHFSEQALAAHTDLSAAQVQGHFMLYKTDPA 409
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 44/173 (25%)
Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA--- 267
++ ++ + + I+ D+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A
Sbjct: 188 LSSVVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 268 --------------------NYLSVEMK------------------DRQNDGASVGSNTK 289
+ LSV + ++QN A G +
Sbjct: 248 EYSICLMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRDLNKQNPTAYQGMG-R 306
Query: 290 LTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCT 342
LT SG+LN +DG+ S+ + RI+ TTNH +R+DPAL+RPGR+DV + +CT
Sbjct: 307 LTFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCT 357
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 38/166 (22%)
Query: 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA----- 267
++ +D +K+ ILDD+ F++ ++Y G ++RGYLLYGPPG+GK+S I A+A
Sbjct: 227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDY 286
Query: 268 -----------------NYLSVEMKDR--------------QNDGASVGSNTKLTLSGIL 296
N+L M +R ++ G ++ +T SG+L
Sbjct: 287 NICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAFNKRSQTGEQGFHSSVTFSGLL 346
Query: 297 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCT 342
N +DG+ SS +E I TTNH E++D A++RPGR+D + + T
Sbjct: 347 NALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNAT 390
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 46/218 (21%)
Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270
+++ + L I+ D+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 271 SVEM-----------KDRQNDGASVGSNT-----------------------------KL 290
+ DR N SV +L
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVKYQGLGRL 307
Query: 291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA 350
T SG+LN +DG+ S+ + RI+ TTNH +R+DPAL+RPGR+D+ + YC+ +
Sbjct: 308 TFSGLLNALDGVAST--EARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQLTQMF 365
Query: 351 SNYLGIKGKSHSLFGEI-EGLIQSTD-VTPAEVAEELM 386
+ G++ SL E ++++T+ ++PA+V M
Sbjct: 366 QRF--YPGQAPSLAENFAEHVLRATNQISPAQVQGYFM 401
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 48/219 (21%)
Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270
D++ + L I+ D+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LDSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 271 SVEM-----------KDRQNDGASVGSNT-----------------------------KL 290
+ DR N SV +L
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPIKYQGLGRL 307
Query: 291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA 350
T SG+LN +DG+ S+ + RI+ TTN+ +R+DPAL+RPGR+D+ + YC+ +
Sbjct: 308 TFSGLLNALDGVAST--EARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCSHWQLTQMF 365
Query: 351 SNYLGIKGKSHSL---FGEIEGLIQSTDVTPAEVAEELM 386
+ G++ SL F E L +++++PA+V M
Sbjct: 366 QRFY--PGQAPSLAENFAE-HVLKATSEISPAQVQGYFM 401
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 48/219 (21%)
Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270
+++ ++ + + I+ D+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LNSVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 271 SVEM-----------KDRQNDGASVGSNT-----------------------------KL 290
+ DR N SV +L
Sbjct: 248 QHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAENPIKYQGLGRL 307
Query: 291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA 350
T SG+LN +DG+ S+ + RI+ TTNH +R+DPAL+RPGR+D+ + +C+ +
Sbjct: 308 TFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCSRWQLTQMF 365
Query: 351 SNYLGIKGKSHSL---FGEIEGLIQSTDVTPAEVAEELM 386
+ G++ SL F + L +T ++PA+V M
Sbjct: 366 QRFY--PGQATSLAENFAD-RVLQATTQISPAQVQGYFM 401
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 57/246 (23%)
Query: 195 GGGGMWGSI-NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYG 253
GG G W N + ++ + +LK +++D+ F+ + +YR G ++RGYLLYG
Sbjct: 169 GGNGNWERFGNPRSIRSLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYG 228
Query: 254 PPGTGKSSLIAAMANYLSV----------EMKDRQND-----------------GASVGS 286
PG GKSSLI A+A L++ ++ D+Q + A+ S
Sbjct: 229 EPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDAAFKS 288
Query: 287 N--------------TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRM 332
+ LT SG+LN +DG+ S G RI+ TTN E +D AL+R GR+
Sbjct: 289 HRDNVDSNNNNSNNNNSLTYSGLLNALDGVASQEG--RILFMTTNKIELLDSALIREGRI 346
Query: 333 DVHINMSYCT--------VHGFKVLASNYLGIKGK----SHSL-FGEIEGLIQSTDVTPA 379
D+ I +S T H + + N L I+ H L +I+G + +P
Sbjct: 347 DLKIKVSNATKSQAAQLFTHFYNLPTDNQLAIRFSENLHDHQLSMSQIQGFLLKYINSPE 406
Query: 380 EVAEEL 385
+ EE+
Sbjct: 407 KAIEEV 412
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 288 TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFK 347
+KLTLSGILN +DG+++S G RI++ TTNH E +DPAL+R GR+D+ I S C +
Sbjct: 90 SKLTLSGILNSLDGIFNSEG--RIVIMTTNHSEVLDPALIRRGRIDMQIEFSNCDRYQIA 147
Query: 348 VLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVA 382
+ N+ G S +I I S +PA V+
Sbjct: 148 KMYENFYGKNADS-----DILSKIPSDIYSPAHVS 177
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 48/195 (24%)
Query: 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA 267
P+TF+ +A E + + +D FL+ E Y+ +G +G LL GPPGTGK+ L A+A
Sbjct: 247 PTTFEDVAGIEEAVDEVREVVD-FLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKAIA 305
Query: 268 N-----YLSVEMKD-------------------------------------RQNDGASVG 285
+ S+ D + G+ VG
Sbjct: 306 GEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDALGKSRSGSVVG 365
Query: 286 SNTKL--TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV 343
+ + TL+ +L +DG S+ G I+V TN E +DPALLRPGR D H+ + V
Sbjct: 366 GHDEREQTLNALLVEMDGFDSNSG--VIVVAATNRPETLDPALLRPGRFDRHVLVDRPDV 423
Query: 344 HGF-KVLASNYLGIK 357
G ++LA + +K
Sbjct: 424 AGREEILAVHVKNVK 438
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 86/188 (45%), Gaps = 54/188 (28%)
Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-- 268
F +A E K+ I++ + +FL+ +FY R+G RG +L GPPGTGK+ L A A
Sbjct: 295 FADVAGVDEAKEEIMEFV-KFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEA 353
Query: 269 ---YLSV---------------EMKD-----RQND------------------GASVGSN 287
+LSV ++D R+N G GSN
Sbjct: 354 NVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSN 413
Query: 288 TKL--TLSGILNFIDGLWSSCGDERIIVFT-TNHKERIDPALLRPGRMDVHINMSYCTVH 344
+ TL+ +L +DG SS E I+VF TN + +DPALLRPGR D I + +
Sbjct: 414 DERESTLNQLLVEMDGFTSS---EHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIG 470
Query: 345 G----FKV 348
G FKV
Sbjct: 471 GREQIFKV 478
>sp|P71408|FTSH_HELPY ATP-dependent zinc metalloprotease FtsH OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=ftsH PE=1 SV=2
Length = 632
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 106/251 (42%), Gaps = 67/251 (26%)
Query: 196 GGGMWGS------INLEHPST-FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG 248
GGG++G IN E P+ F+ +A + E K+ +++ +D FL+ E Y +G +G
Sbjct: 147 GGGIFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKG 205
Query: 249 YLLYGPPGTGKSSLIAAMAN-----YLS------VEM----------------------- 274
LL GPPGTGK+ L A+A + S +EM
Sbjct: 206 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSI 265
Query: 275 ----------KDRQNDGASVGSNTK-LTLSGILNFIDGLWSSCGDERIIVFTTNHKERID 323
K R G G++ + TL+ +L +DG S I++ TN E +D
Sbjct: 266 IFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEILD 324
Query: 324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAE 383
PAL+RPGR D + + + G+ L I+G+ + DV EVA+
Sbjct: 325 PALMRPGRFDRQVLVDKPDFN-------------GRVEILKVHIKGVKLANDVNLQEVAK 371
Query: 384 ELMKADDADVA 394
AD+A
Sbjct: 372 LTAGLAGADLA 382
>sp|O32617|FTSH_HELFC ATP-dependent zinc metalloprotease FtsH OS=Helicobacter felis
(strain ATCC 49179 / NCTC 12436 / CS1) GN=ftsH PE=3 SV=1
Length = 638
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 84/193 (43%), Gaps = 51/193 (26%)
Query: 193 GGGGGGMWGS---INLEHPST-FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG 248
GGG GM S IN E P F+ +A + E K+ +++ +D FL+ + Y +G +G
Sbjct: 153 GGGIFGMGSSKKLINAEKPKVRFNDMAGNEEAKEEVVEIVD-FLKYPDRYASLGAKIPKG 211
Query: 249 YLLYGPPGTGKSSLIAAMANYLSV-----------EM----------------------- 274
LL GPPGTGK+ L A+A SV EM
Sbjct: 212 VLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSI 271
Query: 275 ----------KDRQNDGASVGSNTK-LTLSGILNFIDGLWSSCGDERIIVFTTNHKERID 323
K R G G++ + TL+ +L +DG S I++ TN E +D
Sbjct: 272 IFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENA-PVIVLAATNRPEILD 330
Query: 324 PALLRPGRMDVHI 336
PALLRPGR D +
Sbjct: 331 PALLRPGRFDRQV 343
>sp|Q9ZM66|FTSH_HELPJ ATP-dependent zinc metalloprotease FtsH OS=Helicobacter pylori
(strain J99) GN=ftsH PE=3 SV=1
Length = 632
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 116/281 (41%), Gaps = 72/281 (25%)
Query: 196 GGGMWGS------INLEHPST-FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG 248
GGG++G IN E P+ F+ +A + E K+ +++ +D FL+ E Y +G +G
Sbjct: 147 GGGIFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKG 205
Query: 249 YLLYGPPGTGKSSLIAAMAN-----YLS------VEM----------------------- 274
LL GPPGTGK+ L A+A + S +EM
Sbjct: 206 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSI 265
Query: 275 ----------KDRQNDGASVGSNTK-LTLSGILNFIDGLWSSCGDERIIVFTTNHKERID 323
K R G G++ + TL+ +L +DG S I++ TN E +D
Sbjct: 266 IFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEILD 324
Query: 324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAE 383
PAL+RPGR D + + + G+ L I+G+ + DV EVA+
Sbjct: 325 PALMRPGRFDRQVLVDKPDFN-------------GRVEILKVHIKGVKLANDVNLQEVAK 371
Query: 384 ELMKADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANE 424
AD+A N + + A + +VK + E
Sbjct: 372 LTAGLAGADLA-----NIINEAALLAGRNNQKEVKQQHLKE 407
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 37/173 (21%)
Query: 214 LAMDPELKQMILDDLDRFLRR-KEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN---- 268
+ M+P LK+ I +D+F K FY+ +KRG LLYGPPG GK++L+ ++A
Sbjct: 187 VIMNPLLKKEIYRSIDQFFHSDKSFYQTYDIPYKRGILLYGPPGNGKTTLVKSIAGSIDA 246
Query: 269 ---------YLSVEMKDRQNDGASVGSNTKLTLSGI-----------LNFIDGLWSSCGD 308
+ S E + A + L + I LN +DG S G
Sbjct: 247 PVAYWQITEFTSSETIEEVFQAARRLAPAVLVIEDIDSMPEDVRSFFLNTLDGATSKEG- 305
Query: 309 ERIIVFTTNHKERIDPALL-RPGRMDV---------HINMSYCTVHGFKVLAS 351
++ TTN+ E IDP L+ R GR D + + Y + GF + S
Sbjct: 306 -LFLIGTTNYPEEIDPGLMNRAGRFDRAYEIGLPDEELRLEYMKMRGFGIFLS 357
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 47/178 (26%)
Query: 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL- 270
D +D ++++ I + +++ L+ E + +VG +G LLYGPPGTGK+ L A+AN+
Sbjct: 180 DIGGLDEQIRE-IREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHAD 238
Query: 271 -----------------------------------SVEMKD--------RQNDGASVGSN 287
S+ D R D S
Sbjct: 239 ATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDRE 298
Query: 288 TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
+ TL+ +L +DG + D ++I TN K+ +DPALLRPGR D HI + G
Sbjct: 299 VQRTLTQLLAEMDG-FDPLDDIKVIA-ATNRKDILDPALLRPGRFDRHIKIPLPDEEG 354
>sp|A0LR74|FTSH_ACIC1 ATP-dependent zinc metalloprotease FtsH OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=ftsH PE=3
SV=1
Length = 666
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 79/179 (44%), Gaps = 49/179 (27%)
Query: 206 EHPST-FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIA 264
E P T F +A +K I + +D FLR E YRR G A RG L+ GPPGTGK+ +
Sbjct: 172 ERPQTRFSDVAGYDGVKAEIAEVVD-FLRSPERYRRAGAAIPRGVLMVGPPGTGKTLMAR 230
Query: 265 AMAN-----YLS------VEM---------------------------------KDRQND 280
A+A +LS VEM + R
Sbjct: 231 AVAGEAGVPFLSVTGSSFVEMFVGVGASRVRDLFEEARKHAPCIVFVDEIDAIGQRRAGA 290
Query: 281 GASVGSNTK-LTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINM 338
G V ++ + TL+ +L +DG + G +++ TN E +DPALLRPGR D + +
Sbjct: 291 GTIVANDEREQTLNQLLAEMDGFEPAQG--VVVLAATNRPEVLDPALLRPGRFDRQVTV 347
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 45/171 (26%)
Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSVE 273
E KQ I + ++ +R E ++R+G +G LLYGPPGTGK+ L A+AN +++V
Sbjct: 219 EAKQKIREIVEWPMRHPELFQRLGIDPPKGILLYGPPGTGKTLLARALANEIGAYFITVN 278
Query: 274 -------------------MKDRQNDGASV-----------------GSNTKLTLSGILN 297
K+ + + S+ G K ++ +L
Sbjct: 279 GPEIMSKFYGESEQRIREIFKEAEENAPSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLT 338
Query: 298 FIDGLWSSCGDERIIVF-TTNHKERIDPALLRPGRMDVHINMSYCTVHGFK 347
+DG+ G R+IV TN + IDPAL RPGR D I + G K
Sbjct: 339 LMDGIK---GRGRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDTKGRK 386
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 44/156 (28%)
Query: 220 LKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAM-----ANYLSVE- 273
+KQ + + ++ LR E + + G +G LL+GPPGTGK+ L A+ AN+++V
Sbjct: 495 VKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRG 554
Query: 274 -------------------MKDRQND----------------GASVGSN-TKLTLSGILN 297
K RQ G S S T+ ++ +L
Sbjct: 555 PEILSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLA 614
Query: 298 FIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMD 333
+DG+ ++ +I+ TN + +DPALLRPGR D
Sbjct: 615 EMDGIVPL--NKVVIIAATNRPDILDPALLRPGRFD 648
>sp|D1C2C6|FTSH2_SPHTD ATP-dependent zinc metalloprotease FtsH 2 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH2 PE=3
SV=1
Length = 652
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 77/169 (45%), Gaps = 51/169 (30%)
Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAM--- 266
TFD +A E+K+ + D +D +LR E +RR+G RG LL GPPGTGK+ L A+
Sbjct: 158 TFDDVAGAEEVKEEVADIVD-YLRDPERFRRLGARIPRGVLLTGPPGTGKTLLTRALAGE 216
Query: 267 --ANYLSVE--------------------MKDRQNDGASV-----------------GSN 287
A++ SV K ++N A + S
Sbjct: 217 ARASFFSVSGSEFVELYVGVGASRVRELFRKAKENAPAIIFIDEIDAIGRRRGRMEQSSE 276
Query: 288 TKLTLSGILNFIDGLWSSCGDER---IIVFTTNHKERIDPALLRPGRMD 333
TL+ IL +DG +ER ++V TN + +DPALLRPGR D
Sbjct: 277 YDQTLNQILVEMDGF-----EERTTVVVVAATNRVDILDPALLRPGRFD 320
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 46/147 (31%)
Query: 236 EFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA-----NYLSV------------------ 272
E ++RVG +G LL+GPPGTGK+ L A+A N+L V
Sbjct: 174 ELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIR 233
Query: 273 EM----KDRQ-----------------NDGASVGSNTKLTLSGILNFIDGLWSSCGDERI 311
EM +D Q ++G S + TL +LN +DG + S G ++
Sbjct: 234 EMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG-FDSLGKVKV 292
Query: 312 IVFTTNHKERIDPALLRPGRMDVHINM 338
I+ TN + +DPALLRPGR+D I +
Sbjct: 293 IM-ATNRPDTLDPALLRPGRLDRKIEI 318
>sp|A9FDV9|FTSH2_SORC5 ATP-dependent zinc metalloprotease FtsH 2 OS=Sorangium cellulosum
(strain So ce56) GN=ftsH2 PE=3 SV=1
Length = 607
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 103/255 (40%), Gaps = 58/255 (22%)
Query: 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
+TF +A + E K + + +D FL+ E Y ++G RG LL GPPGTGK+ L A+A
Sbjct: 152 ATFRDVAGNAEAKTELSEIVD-FLKAPERYEKLGGRMPRGVLLVGPPGTGKTLLARAIAG 210
Query: 269 YLSVEMKDRQNDG-----ASVGSNTKLTL-------SGILNFID---------GLWSSCG 307
SV VG+ L L FID GL S G
Sbjct: 211 EASVPFFSASGSEFVEMFVGVGAARVRDLFSQAREKGACLVFIDELDAVGKVRGLGGSVG 270
Query: 308 --DER--------------------IIVFTTNHKERIDPALLRPGRMD--VHINM----- 338
DER +++ TN E +DPALLRPGR D VHI+
Sbjct: 271 GHDEREQTLNQLLTEMDGFDAHTAMVVIGATNRAEILDPALLRPGRFDRRVHIDRPDLAE 330
Query: 339 --SYCTVHGFKVL---ASNYLGIKGKSHSLFG-EIEGLIQSTDVTPAEVAEELMKADDAD 392
VH KV ++ + ++ L G ++ ++ + A E + D +
Sbjct: 331 RKEILAVHARKVALDPGADLDAVAAQTAGLVGADLANIVNEAALLAARRGAEAVGHGDLE 390
Query: 393 VALE-GLVNFLKRKR 406
A+E GL +R R
Sbjct: 391 AAIERGLAGLERRGR 405
>sp|P73179|FTSH1_SYNY3 ATP-dependent zinc metalloprotease FtsH 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH1 PE=2 SV=1
Length = 665
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 114/273 (41%), Gaps = 64/273 (23%)
Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270
FD +A E K+ L ++ FL++ E + +G RG LL GPPGTGK+ L A+A
Sbjct: 210 FDDVAGIDEAKEE-LQEVVTFLKQPEKFTAIGAKIPRGVLLIGPPGTGKTLLAKAIAGEA 268
Query: 271 SV--------------------EMKD----------------------RQNDGASVGSNT 288
V ++D RQ G N
Sbjct: 269 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGGND 328
Query: 289 KL--TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGF 346
+ TL+ +L +DG + G I++ TN + +D ALLRPGR D + + Y V G
Sbjct: 329 EREQTLNQLLTEMDGFEGNSGI--IVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQGR 386
Query: 347 KVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRKR 406
+++ L I ++ L E++ L TP AD A+V E + F R+R
Sbjct: 387 ELI----LAIHAQNKKLHEEVQ-LAAIARRTPG-----FTGADLANVLNEAAI-FTARRR 435
Query: 407 IQA------DESKNNDVKGEEANEVEHEKAKQL 433
+A +++ + V G E + K+K+L
Sbjct: 436 KEAITMAEVNDAIDRVVAGMEGTPLVDSKSKRL 468
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 207 HPS---TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLI 263
HP ++ +D ++I+ D+ +FL ++Y G ++RGYLLYGPPGTGKSS I
Sbjct: 199 HPRRKRPISSVILDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFI 258
Query: 264 AAMANYLSVEMKDRQNDGASVGSNTKL 290
A+A L + + G SV S+T L
Sbjct: 259 TALAGELQLSICILNLAGKSV-SDTSL 284
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 37/154 (24%)
Query: 203 INLEHPSTFDT-----LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGT 257
+NL S DT LA P+ ++L+D+D ++ T
Sbjct: 272 LNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQ-----------------------T 308
Query: 258 GKSSLIAAM--ANYLSVEMKDRQNDG----ASVGSN-TKLTLSGILNFIDGLWSSCGDER 310
G L A AN S+ Q G SV S + LT SG+LN +DG+ +S G R
Sbjct: 309 GNHDLSAKSNSANAPSISSGGLQYQGYYGNPSVSSGGSALTFSGLLNALDGVAASEG--R 366
Query: 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVH 344
I+ TTNH E++D L+RPGR+D+ I + C+ +
Sbjct: 367 ILFMTTNHLEKLDKVLIRPGRVDLQIEIGLCSSY 400
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 81/192 (42%), Gaps = 52/192 (27%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA-----NYLSV-------------- 272
L+ E + RVG +G LLYGPPGTGK+ L A+A N+L V
Sbjct: 152 LKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESA 211
Query: 273 ----EM---------------------KDRQNDGASVGSNTKLTLSGILNFIDGLWSSCG 307
EM R ++G S + TL +LN +DG + G
Sbjct: 212 RIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG-FDYLG 270
Query: 308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEI 367
+II TN + +DPALLRPGR+D I + G L I + S GEI
Sbjct: 271 QTKII-MATNRPDTLDPALLRPGRLDRKIEIPLPNEVG----RMEILKIHLEKVSKQGEI 325
Query: 368 --EGLIQSTDVT 377
E L++ TD T
Sbjct: 326 DYEALVKLTDGT 337
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 77/178 (43%), Gaps = 43/178 (24%)
Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN- 268
TFD +A E+K+ + + +D FL+ + Y +G +G LLYGPPGTGK+ L A+A
Sbjct: 155 TFDDVAGIDEVKEELAEIVD-FLKHPKRYLELGARIPKGVLLYGPPGTGKTLLAKAVAGE 213
Query: 269 ----YLSVEMKDRQNDGASVGSNTKLTL-------SGILNFIDGL----------WSSCG 307
+ S+ D VG++ L S + FID + +
Sbjct: 214 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGAGYGGGH 273
Query: 308 DER--------------------IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
DER II+ TN + +DPALLRPGR D I + + G
Sbjct: 274 DEREQTLNQLLVEMDGFSANEGIIIIAATNRPDVLDPALLRPGRFDRQIVIDRPDLKG 331
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 69/159 (43%), Gaps = 46/159 (28%)
Query: 231 FLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSVEMKD--------- 276
FLR E Y+++G +G LL GPPGTGK+ L A+A + S+ D
Sbjct: 240 FLRSPEKYQKLGGRIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEMFVGVG 299
Query: 277 --RQND---------------------GASVGSNT-------KLTLSGILNFIDGLWSSC 306
R D G S G+ + TL+ +L +DG S+
Sbjct: 300 AARVRDMFQQAEAKAPCIIFIDELDALGKSRGAGIMGGHDEREQTLNALLVEMDGFGSNS 359
Query: 307 GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
G I++ TN E +DPALLRPGR D H+ + + G
Sbjct: 360 G--VIVMAATNRPETLDPALLRPGRFDRHVLVDRPDIKG 396
>sp|P0C5C0|FTSH_MYCTU ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis GN=ftsH PE=1 SV=1
Length = 760
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 52/226 (23%)
Query: 209 STF-DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA 267
+TF D +D ++++ ++ FL+ Y+ +G +G LLYGPPGTGK+ L A+A
Sbjct: 160 TTFADVAGVDEAVEELY--EIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVA 217
Query: 268 NYLSV-----------EM--------------KDRQND----------------GASVGS 286
V EM + +QN GA +G
Sbjct: 218 GEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGG 277
Query: 287 N---TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV 343
+ TL+ +L +DG G I++ TN + +DPALLRPGR D I +S +
Sbjct: 278 GHDEREQTLNQLLVEMDGFGDRAG--VILIAATNRPDILDPALLRPGRFDRQIPVSNPDL 335
Query: 344 HGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMKA 388
G + + + KGK + +++GL + T +T A++A + +A
Sbjct: 336 AGRRAVLRVHS--KGKPMAADADLDGLAKRTVGMTGADLANVINEA 379
>sp|A5U8T5|FTSH_MYCTA ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3
SV=1
Length = 760
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 52/226 (23%)
Query: 209 STF-DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA 267
+TF D +D ++++ ++ FL+ Y+ +G +G LLYGPPGTGK+ L A+A
Sbjct: 160 TTFADVAGVDEAVEELY--EIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVA 217
Query: 268 NYLSV-----------EM--------------KDRQND----------------GASVGS 286
V EM + +QN GA +G
Sbjct: 218 GEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGG 277
Query: 287 N---TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV 343
+ TL+ +L +DG G I++ TN + +DPALLRPGR D I +S +
Sbjct: 278 GHDEREQTLNQLLVEMDGFGDRAG--VILIAATNRPDILDPALLRPGRFDRQIPVSNPDL 335
Query: 344 HGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMKA 388
G + + + KGK + +++GL + T +T A++A + +A
Sbjct: 336 AGRRAVLRVHS--KGKPMAADADLDGLAKRTVGMTGADLANVINEA 379
>sp|P0A4V9|FTSH_MYCBO ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ftsH PE=3 SV=1
Length = 760
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 52/226 (23%)
Query: 209 STF-DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMA 267
+TF D +D ++++ ++ FL+ Y+ +G +G LLYGPPGTGK+ L A+A
Sbjct: 160 TTFADVAGVDEAVEELY--EIKDFLQNPSRYQALGAKIPKGVLLYGPPGTGKTLLARAVA 217
Query: 268 NYLSV-----------EM--------------KDRQND----------------GASVGS 286
V EM + +QN GA +G
Sbjct: 218 GEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGG 277
Query: 287 N---TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV 343
+ TL+ +L +DG G I++ TN + +DPALLRPGR D I +S +
Sbjct: 278 GHDEREQTLNQLLVEMDGFGDRAG--VILIAATNRPDILDPALLRPGRFDRQIPVSNPDL 335
Query: 344 HGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMKA 388
G + + + KGK + +++GL + T +T A++A + +A
Sbjct: 336 AGRRAVLRVHS--KGKPMAADADLDGLAKRTVGMTGADLANVINEA 379
>sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1
Length = 695
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 84/191 (43%), Gaps = 51/191 (26%)
Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN- 268
TFD +A E KQ ++ ++ FL++ E + VG +G LL GPPGTGK+ L A+A
Sbjct: 225 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGE 283
Query: 269 ----YLS------VEM--------------KDRQND----------------GASVGSNT 288
+ S VEM K ++N G +G
Sbjct: 284 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 343
Query: 289 ---KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
+ TL+ +L +DG + G I+V TN + +D ALLRPGR D +++ V G
Sbjct: 344 DEREQTLNQLLTEMDGFEGNTG--VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKG 401
Query: 346 ----FKVLASN 352
KV A N
Sbjct: 402 RTDILKVHAGN 412
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 46/160 (28%)
Query: 221 KQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE------- 273
KQ I + ++ L + + Y+++G RG LLYGPPGTGK+ L+ A+AN +
Sbjct: 175 KQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGS 234
Query: 274 -------------MKD-----RQNDGASV-----------------GSNTKL--TLSGIL 296
++D R+N A + G++ ++ L +L
Sbjct: 235 EFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELL 294
Query: 297 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
N +DG S + ++ TN + +DPALLRPGR+D I
Sbjct: 295 NQMDGFEQSSNVK--VIMATNRADTLDPALLRPGRLDRKI 332
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 47/174 (27%)
Query: 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268
+TFD +A K+ + +L +LR + + RVG RG LL GPPGTGK+ L A+A
Sbjct: 173 TTFDEVAGQTNAKREV-QELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAG 231
Query: 269 YLSVEM------------------KDRQ-----------------------NDGASVGSN 287
V + RQ GA G
Sbjct: 232 EAGVNFYPMSASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDSVGRTRGAGYGGG 291
Query: 288 ---TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINM 338
+ TL+ IL +DG + D I++ TN + +DPAL+RPGR D H+ +
Sbjct: 292 HDEREQTLNQILAEMDGF--AGHDAVIVLAATNRPDVLDPALMRPGRFDRHVTL 343
>sp|Q655S1|FTSH2_ORYSJ ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=FTSH2 PE=3 SV=1
Length = 676
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 51/191 (26%)
Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN- 268
TFD +A E KQ ++ ++ FL++ E + VG +G LL GPPGTGK+ L A+A
Sbjct: 212 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 270
Query: 269 ----YLS------VEM--------------KDRQND----------------GASVGSNT 288
+ S VEM K ++N G +G
Sbjct: 271 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 330
Query: 289 ---KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
+ TL+ +L +DG + G I++ TN + +D ALLRPGR D +++ V G
Sbjct: 331 DEREQTLNQLLTEMDGFEGNTG--IIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRG 388
Query: 346 ----FKVLASN 352
KV SN
Sbjct: 389 RTEILKVHGSN 399
>sp|Q8W585|FTSH8_ARATH ATP-dependent zinc metalloprotease FTSH 8, chloroplastic
OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1
Length = 685
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 47/180 (26%)
Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN- 268
TFD +A E KQ ++ ++ FL++ E + VG +G LL GPPGTGK+ L A+A
Sbjct: 218 TFDDVAGVDEAKQDFMEVVE-FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 276
Query: 269 ----YLS------VEM--------------KDRQND----------------GASVGSNT 288
+ S VEM K ++N G +G
Sbjct: 277 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 336
Query: 289 ---KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
+ TL+ +L +DG + G I+V TN + +D ALLRPGR D +++ V G
Sbjct: 337 DEREQTLNQLLTEMDGFEGNTG--VIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKG 394
>sp|P73437|FTSH4_SYNY3 ATP-dependent zinc metalloprotease FtsH 4 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH4 PE=2 SV=1
Length = 628
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 48/186 (25%)
Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269
TFD +A E K + + +D FL+ + Y +G +G LL GPPGTGK+ L A A
Sbjct: 172 TFDDVAGVEEAKTELSEVVD-FLKFPQRYTALGAKIPKGVLLVGPPGTGKTLLAKAAAGE 230
Query: 270 LSV--------------------------EMKDRQN-----------------DGASVGS 286
V E +Q GA +G
Sbjct: 231 AGVPFFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDAIGKSRASGAFMGG 290
Query: 287 N--TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVH 344
N + TL+ +L +DG +S+ G I++ TN E +DPALLRPGR D + + +
Sbjct: 291 NDEREQTLNQLLTEMDG-FSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLA 349
Query: 345 G-FKVL 349
G K+L
Sbjct: 350 GRLKIL 355
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 48/161 (29%)
Query: 221 KQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN------------ 268
KQ I + ++ L + + YR++G +G LLYGPPGTGK+ L+ A+AN
Sbjct: 143 KQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGS 202
Query: 269 -----YL----------------------------SVEMKDRQNDGASVGSNTKLTLSGI 295
YL S+ K R + S + L +
Sbjct: 203 EFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATK-RFDASTSADREVQRVLIEL 261
Query: 296 LNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
LN +DG + + ++ TN + IDPALLRPGR+D I
Sbjct: 262 LNQMDGFDPAANVK--VIMATNRADTIDPALLRPGRLDRKI 300
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 59/238 (24%)
Query: 225 LDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLS------VE 273
L ++ FL+ + Y+R+G +G LL G PGTGK+ L A+A + S VE
Sbjct: 252 LSEIVSFLKDPQRYQRLGGKIPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSGSDFVE 311
Query: 274 M---------------------------------KDRQNDGASVGSNTKLTLSGILNFID 300
M K R + + TL+ +L +D
Sbjct: 312 MFVGVGAARVRDLFKQAETKAPCIIFIDELDALGKTRALNAVGGNEEREQTLNQLLVEMD 371
Query: 301 GLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFK----------VLA 350
G S+ G II+ TN E +DPALLRPGR D H+ + + G + VLA
Sbjct: 372 GFDSNKG--VIIMAATNRPEILDPALLRPGRFDRHVALDRPDLKGREQILKVHVKGVVLA 429
Query: 351 S--NYLGIKGKSHSLFG-EIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLKRK 405
+ + G++ G ++ L+ + A ++++++ D D AL+ +V L++K
Sbjct: 430 PEVDLTKLAGRTPGFAGADLANLVNEAALLAARKSKQMVEMADFDEALDRIVGGLEKK 487
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=AFG3 PE=1 SV=1
Length = 761
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 49/182 (26%)
Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN- 268
+F +A E KQ I++ + FL+ Y ++G RG +L GPPGTGK+ L A A
Sbjct: 286 SFKNVAGCDEAKQEIMEFV-HFLKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAGE 344
Query: 269 ----YLS------VEM---------------------------------KDRQNDGASVG 285
+LS VEM K+R GA G
Sbjct: 345 ANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALGG 404
Query: 286 SN--TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV 343
+N + TL+ +L +DG +S D+ +++ TN + +D AL+RPGR D HI + V
Sbjct: 405 ANDEREATLNQLLVEMDGFTTS--DQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDV 462
Query: 344 HG 345
+G
Sbjct: 463 NG 464
>sp|O59824|YME1_SCHPO ATP-dependent zinc metalloprotease YME1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC965.04c PE=3 SV=1
Length = 709
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 43/164 (26%)
Query: 225 LDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE---MKDRQNDG 281
L+++ FLR + R+G RG LL GPPGTGK+ L A+A +V M Q D
Sbjct: 279 LEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDE 338
Query: 282 ASVG--------------------------------------SNTKLTLSGILNFIDGLW 303
VG ++ + TL+ +L +DG
Sbjct: 339 MYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDLDGFS 398
Query: 304 SSCGDERIIVF--TTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
+ +VF TN E +DPAL RPGR D HI++ V G
Sbjct: 399 KNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRG 442
>sp|C0ZPK5|FTSH_RHOE4 ATP-dependent zinc metalloprotease FtsH OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=ftsH PE=3 SV=1
Length = 854
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 48/194 (24%)
Query: 225 LDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-----------VE 273
L ++ FL+ Y+ +G RG LLYGPPGTGK+ L A+A VE
Sbjct: 179 LYEIKDFLQNPARYQALGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVE 238
Query: 274 M--------------KDRQND----------------GASVGSN---TKLTLSGILNFID 300
M + +QN GA +G + TL+ +L +D
Sbjct: 239 MFVGVGASRVRDMFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMD 298
Query: 301 GLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKS 360
G G I++ TN + +DPALLRPGR D I + + G + + + +GK
Sbjct: 299 GFGDRTG--IILIAATNRPDILDPALLRPGRFDRQIPVGAPDLAGRRAILRVHS--QGKP 354
Query: 361 HSLFGEIEGLIQST 374
++EGL + T
Sbjct: 355 IDPNADLEGLAKRT 368
>sp|Q7UUZ7|FTSH1_RHOBA ATP-dependent zinc metalloprotease FtsH 1 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH1 PE=3 SV=1
Length = 672
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 73/253 (28%)
Query: 225 LDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSV------- 272
L ++ FL+ E ++++G +G LL GPPGTGK+ L A+A + SV
Sbjct: 209 LQEIVDFLKTPEKFQKLGGQVPKGVLLNGPPGTGKTLLARAVAGEADVPFFSVNGSEFIQ 268
Query: 273 --------EMKD----------------------RQNDGASVGSN---TKLTLSGILNFI 299
++D RQ GA +G + TL+ IL +
Sbjct: 269 MFVGVGASRVRDLFKTAKEQSPSIIFIDEIDAVGRQR-GAGLGGGHDEREQTLNQILGEM 327
Query: 300 DGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG----FKV------- 348
DG + I++ TN + +DPALLRPGR D H+ + T+ G FKV
Sbjct: 328 DGFGGAQA--VIVIAATNRPDVLDPALLRPGRFDRHVTVGRPTMKGREEIFKVHVRDVPL 385
Query: 349 --------LASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELMKADDADVALEGLVN 400
LA+ +G+ G +I ++ + A +++++ D D A + ++
Sbjct: 386 GDDVDLHRLAAGTVGLTG------ADIRNMVNEAALWAARGDKKIVEMSDFDYARDKILM 439
Query: 401 FLKRKRIQADESK 413
KR+ + + K
Sbjct: 440 GAKREEVLLESEK 452
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 59/240 (24%)
Query: 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAM-----ANYLSVE 273
E+KQ + + ++ L+ KE + ++G +G LL+GPPGTGK+ L A+ AN++SV+
Sbjct: 459 EVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVK 518
Query: 274 --------------------MKDRQNDGASV-----------------GSNTKLTLSGIL 296
K RQ+ + + T ++ +L
Sbjct: 519 GPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL 578
Query: 297 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMD----VHINMSYCTVHGFKV---- 348
+DG+ + +++ TN + IDPALLRPGR+D V + + FK+
Sbjct: 579 TELDGMEEP--KDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRS 636
Query: 349 --LAS--NYLGIKGKSHSLFG-EIEGLIQSTDVTPAEVAEELMKADDADVALEGLVNFLK 403
LA N + K+ G +IE L + + V E + K D +V L L+N+L+
Sbjct: 637 MNLAEDVNLEELAKKTEGYTGADIEALCREAAML--AVRESIGKPWDIEVKLRELINYLQ 694
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 43/157 (27%)
Query: 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY---------------------- 269
+R E + ++G +G LL GPPGTGK+ L A+AN
Sbjct: 199 MRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETE 258
Query: 270 --LSVEMKDRQNDGASV-----------------GSNTKLTLSGILNFIDGLWSSCGDER 310
L ++ + + S+ G + ++ +L +DGL +
Sbjct: 259 ENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRG--QV 316
Query: 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFK 347
+++ TN +DPAL RPGR D I + G K
Sbjct: 317 VVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRK 353
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 46/180 (25%)
Query: 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269
TFD + E + + + ++ L+ E ++RVG +G LLYGPPGTGK+ L A+A
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 270 LSV-----------------------EM---------------------KDRQNDGASVG 285
+ EM R ++G S
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSAD 298
Query: 286 SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
+ TL +L +DG + + G +II+ TN + +DPALLRPGR+D + + G
Sbjct: 299 REIQRTLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
>sp|P32794|AFG2_YEAST ATPase family gene 2 protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AFG2 PE=1 SV=1
Length = 780
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 46/177 (25%)
Query: 203 INLEHPSTF-DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSS 261
I LE P + + ELK + + + L E + R+G + +G LLYGPPG K+
Sbjct: 506 IFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPPGCSKTL 565
Query: 262 LIAAMA-----NYLSVEMKDRQN------------------------------------- 279
A+A N+L+V+ + N
Sbjct: 566 TAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFDEIDALSPDR 625
Query: 280 DGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
DG+S + + L+ +LN IDG+ G +IV TN + ID ALLRPGR+D HI
Sbjct: 626 DGSSTSAANHV-LTSLLNEIDGVEELKG--VVIVAATNRPDEIDAALLRPGRLDRHI 679
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 51/209 (24%)
Query: 204 NLEHPSTFDTLA-MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSL 262
NL P ++ + +D E++ + ++ L + + G + RG LL+GPPGTGK+ L
Sbjct: 237 NLPEPLSYAAVGGLDKEIESL-KSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTML 295
Query: 263 IAAMAN-----------------YLS---VEMKD------------------------RQ 278
+ +AN YL ++D R
Sbjct: 296 LRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRA 355
Query: 279 NDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINM 338
ND + G ++ +L +DG+ ++ + +++ TN +DPAL RPGR D + +
Sbjct: 356 NDDS--GEVESRVVATLLTLMDGMGAA--GKVVVIAATNRPNSVDPALRRPGRFDQEVEI 411
Query: 339 SYCTVHG-FKVLASNYLGIKGKSHSLFGE 366
V F +L + + H L E
Sbjct: 412 GIPDVDARFDILTKQFSRMSSDRHVLDSE 440
>sp|D1C4U5|FTSH3_SPHTD ATP-dependent zinc metalloprotease FtsH 3 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH3 PE=3
SV=1
Length = 489
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 74/176 (42%), Gaps = 42/176 (23%)
Query: 205 LEHP-STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLI 263
+E P +TF +A E K+ L ++ FLR E +RR+G RG LL GPPGTGK+ L
Sbjct: 47 VERPETTFSDVAGLIEAKEE-LAEIVTFLRDPERFRRMGARMPRGVLLAGPPGTGKTLLA 105
Query: 264 AAMANYLSV---EMKDRQNDGASVGSNTKLT---------LSGILNF---IDGLWSSCGD 308
A+A V M Q VG K S + F ID + GD
Sbjct: 106 RAVAGEAGVPFFAMSASQFVEVYVGVGAKRVRDLFAAARKASPAIVFIDEIDAIGRRRGD 165
Query: 309 ER-------------------------IIVFTTNHKERIDPALLRPGRMDVHINMS 339
+ +++ TN + +DPALLRPGR D + +S
Sbjct: 166 SQSHQEYEQTLNQVLVELDGFHPRQAVVVIAATNRSDILDPALLRPGRFDRRVELS 221
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 46/160 (28%)
Query: 221 KQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE------- 273
KQ I + ++ L E Y+++G RG LLYGPPGTGK+ L A+AN+ +
Sbjct: 164 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 223
Query: 274 -------------MKD-----RQNDGASV-----------------GSNTKL--TLSGIL 296
++D ++N A + G++ ++ L +L
Sbjct: 224 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELL 283
Query: 297 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
N +DG + + ++ TN + +DPALLRPGR+D I
Sbjct: 284 NQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLDRKI 321
>sp|C7MC16|FTSH_BRAFD ATP-dependent zinc metalloprotease FtsH OS=Brachybacterium faecium
(strain ATCC 43885 / DSM 4810 / NCIB 9860) GN=ftsH PE=3
SV=1
Length = 704
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 85/212 (40%), Gaps = 55/212 (25%)
Query: 225 LDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLSVEMKDRQN 279
LD++ +FL Y+ VG +G LLYGPPGTGK+ L A+A + S+ D
Sbjct: 189 LDEIKQFLVDPGRYQAVGAKIPKGVLLYGPPGTGKTLLAKAVAGEANVPFYSISGSDFVE 248
Query: 280 DGASVGS-------NTKLTLSGILNFID-----GLWSSCG-----DER------------ 310
VG+ NT + + FID G G DER
Sbjct: 249 MFVGVGASRVRDLFNTAKENAPAIIFIDEIDAVGRHRGAGMGGGHDEREQTLNQMLVEMD 308
Query: 311 --------IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHS 362
I++ TN + +DPALLRPGR D I + +KG+ H
Sbjct: 309 GFEENQNVILIAATNRVDILDPALLRPGRFDRQIGVEAPD-------------LKGRLHI 355
Query: 363 LFGEIEGLIQSTDVTPAEVAEELMKADDADVA 394
L +G + DV VA+ + AD+A
Sbjct: 356 LGVHAKGKPLAHDVDLEAVAKRAIGMSGADLA 387
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 46/160 (28%)
Query: 221 KQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE------- 273
KQ I + ++ L E Y+++G RG LLYGPPGTGK+ L A+AN+ +
Sbjct: 170 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 229
Query: 274 -------------MKD-----RQNDGASV-----------------GSNTKL--TLSGIL 296
++D ++N A + G++ ++ L +L
Sbjct: 230 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELL 289
Query: 297 NFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHI 336
N +DG + + ++ TN + +DPALLRPGR+D I
Sbjct: 290 NQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLDRKI 327
>sp|D2NQQ7|FTSH_ROTMD ATP-dependent zinc metalloprotease FtsH OS=Rothia mucilaginosa
(strain DY-18) GN=ftsH PE=3 SV=1
Length = 756
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 48/178 (26%)
Query: 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271
D +D L + L+++ FL E + R+G +G LLYGPPGTGK+ L A+A
Sbjct: 202 DVAGVDEALAE--LEEVREFLAEPEKFTRLGAKIPKGVLLYGPPGTGKTLLAKAVAGEAG 259
Query: 272 -----------VEM-------------KDRQNDGASV--------------------GSN 287
VEM K+ ++D A++
Sbjct: 260 VPFYSISGSDFVEMFVGVGASRVRDLFKEAKSDPAAIVFVDEIDAVGRRRGVGMGGGNDE 319
Query: 288 TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
+ TL+ +L +DG + I++ TN + +DPALLRPGR D I + + G
Sbjct: 320 REQTLNQLLVEMDGFDGNS--NVIVIAATNRPDVLDPALLRPGRFDRQIGVDAPDMQG 375
>sp|Q4L3G8|FTSH_STAHJ ATP-dependent zinc metalloprotease FtsH OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=ftsH PE=3 SV=1
Length = 727
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 49/180 (27%)
Query: 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-- 268
F +A E KQ +++ +D FL+ + ++++G +G LL GPPGTGK+ L A+A
Sbjct: 164 FSDVAGADEEKQELIEIVD-FLKDNKKFKQMGSRIPKGVLLVGPPGTGKTLLARAVAGEA 222
Query: 269 ---YLSVEMKD-------------------------------------RQNDGASVGSN- 287
+ S+ D RQ GA VG
Sbjct: 223 GAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQR-GAGVGGGH 281
Query: 288 --TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHG 345
+ TL+ +L +DG + G I++ TN + +DPALLRPGR D I + V G
Sbjct: 282 DEREQTLNQLLVEMDGFGENEG--IIMIAATNRPDILDPALLRPGRFDRQIQVGRPDVKG 339
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,077,041
Number of Sequences: 539616
Number of extensions: 7375925
Number of successful extensions: 31120
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 29746
Number of HSP's gapped (non-prelim): 1484
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)