Query 013823
Match_columns 436
No_of_seqs 420 out of 2625
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:44:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 5E-90 1.1E-94 686.1 33.9 399 13-416 2-445 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 4.7E-37 1E-41 297.9 12.2 179 204-386 143-366 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 2.1E-33 4.6E-38 290.0 11.0 177 206-386 428-646 (693)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 4.2E-31 9E-36 269.7 14.7 177 208-386 507-727 (802)
5 KOG0731 AAA+-type ATPase conta 100.0 4.6E-31 1E-35 279.9 13.7 214 207-424 306-579 (774)
6 KOG0734 AAA+-type ATPase conta 100.0 2.1E-31 4.6E-36 268.1 7.3 173 208-385 300-514 (752)
7 KOG0727 26S proteasome regulat 100.0 4.4E-30 9.5E-35 238.6 10.2 177 206-386 149-370 (408)
8 KOG0726 26S proteasome regulat 100.0 6E-30 1.3E-34 241.8 5.6 180 204-387 177-401 (440)
9 PF14363 AAA_assoc: Domain ass 100.0 2E-28 4.4E-33 201.9 11.6 97 35-132 1-98 (98)
10 KOG0652 26S proteasome regulat 100.0 2.2E-28 4.7E-33 228.2 9.8 178 205-386 164-386 (424)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 2.7E-28 5.8E-33 249.2 11.2 175 209-386 187-405 (802)
12 KOG0736 Peroxisome assembly fa 100.0 5.5E-28 1.2E-32 252.3 13.4 179 206-386 666-889 (953)
13 PTZ00454 26S protease regulato 99.9 1.2E-27 2.5E-32 244.1 14.4 177 206-386 139-360 (398)
14 KOG0738 AAA+-type ATPase [Post 99.9 9.2E-28 2E-32 234.7 11.8 174 208-386 208-426 (491)
15 KOG0728 26S proteasome regulat 99.9 2.6E-28 5.6E-33 226.6 7.3 178 205-386 140-362 (404)
16 KOG0729 26S proteasome regulat 99.9 5.8E-28 1.3E-32 226.0 8.8 183 201-387 166-393 (435)
17 COG0465 HflB ATP-dependent Zn 99.9 1.4E-27 3.1E-32 249.5 8.6 212 207-423 145-415 (596)
18 TIGR03689 pup_AAA proteasome A 99.9 1.5E-26 3.4E-31 240.7 12.9 149 206-356 176-380 (512)
19 PTZ00361 26 proteosome regulat 99.9 8E-26 1.7E-30 232.3 13.4 179 204-386 175-398 (438)
20 PRK03992 proteasome-activating 99.9 1.1E-25 2.3E-30 230.1 13.9 177 206-386 125-346 (389)
21 TIGR01243 CDC48 AAA family ATP 99.9 1.3E-25 2.9E-30 246.7 15.7 175 208-386 449-666 (733)
22 TIGR01241 FtsH_fam ATP-depende 99.9 8.2E-26 1.8E-30 238.1 12.0 176 206-386 49-269 (495)
23 KOG0735 AAA+-type ATPase [Post 99.9 2.2E-25 4.8E-30 231.0 13.9 199 199-406 652-894 (952)
24 CHL00195 ycf46 Ycf46; Provisio 99.9 1.9E-25 4.2E-30 232.6 13.0 173 207-386 223-438 (489)
25 KOG0737 AAA+-type ATPase [Post 99.9 4.1E-25 8.9E-30 216.0 9.7 188 209-405 89-319 (386)
26 COG0464 SpoVK ATPases of the A 99.9 3.8E-24 8.3E-29 225.6 15.7 179 206-386 236-456 (494)
27 CHL00176 ftsH cell division pr 99.9 2.1E-24 4.5E-29 231.4 12.3 176 206-386 177-397 (638)
28 COG1223 Predicted ATPase (AAA+ 99.9 1.7E-24 3.7E-29 202.2 8.7 171 207-387 116-329 (368)
29 TIGR01242 26Sp45 26S proteasom 99.9 1.5E-23 3.2E-28 212.9 13.8 178 205-386 115-337 (364)
30 KOG0739 AAA+-type ATPase [Post 99.9 1.3E-24 2.9E-29 206.2 4.0 174 203-382 123-340 (439)
31 KOG0651 26S proteasome regulat 99.9 5.4E-24 1.2E-28 203.2 5.5 175 209-387 129-348 (388)
32 PRK10733 hflB ATP-dependent me 99.9 1.3E-22 2.7E-27 219.4 10.1 175 207-386 147-366 (644)
33 KOG0732 AAA+-type ATPase conta 99.9 3.6E-22 7.9E-27 217.5 13.4 179 205-386 258-483 (1080)
34 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.5E-21 3.2E-26 220.9 11.4 170 234-403 1618-1882(2281)
35 KOG0741 AAA+-type ATPase [Post 99.8 1.3E-21 2.8E-26 197.6 8.8 180 205-386 212-449 (744)
36 KOG0740 AAA+-type ATPase [Post 99.8 1.5E-21 3.4E-26 196.9 8.3 178 206-387 147-366 (428)
37 PLN00020 ribulose bisphosphate 99.8 1.2E-20 2.6E-25 186.6 13.8 162 206-374 109-328 (413)
38 TIGR01243 CDC48 AAA family ATP 99.8 1.3E-20 2.9E-25 207.3 15.1 176 207-386 173-390 (733)
39 KOG0730 AAA+-type ATPase [Post 99.8 1.4E-19 3E-24 188.0 13.7 174 207-386 180-395 (693)
40 KOG0742 AAA+-type ATPase [Post 99.7 6.8E-18 1.5E-22 166.5 3.9 198 148-357 296-531 (630)
41 KOG0744 AAA+-type ATPase [Post 99.6 9.3E-17 2E-21 154.6 4.1 153 199-355 129-341 (423)
42 PF05496 RuvB_N: Holliday junc 99.5 5.9E-14 1.3E-18 131.0 10.8 172 204-386 16-223 (233)
43 CHL00181 cbbX CbbX; Provisiona 99.5 9.3E-14 2E-18 136.5 9.5 139 212-357 23-212 (287)
44 PF00004 AAA: ATPase family as 99.4 4.2E-14 9E-19 121.6 3.6 90 249-340 1-132 (132)
45 PRK00080 ruvB Holliday junctio 99.4 3.4E-13 7.3E-18 135.2 10.4 169 206-385 19-223 (328)
46 TIGR02881 spore_V_K stage V sp 99.4 3.5E-13 7.6E-18 130.8 9.7 140 211-357 5-194 (261)
47 TIGR00635 ruvB Holliday juncti 99.4 6E-13 1.3E-17 131.8 10.2 161 210-381 2-198 (305)
48 TIGR02880 cbbX_cfxQ probable R 99.4 3.7E-13 7.9E-18 132.2 8.3 140 211-357 20-211 (284)
49 COG0466 Lon ATP-dependent Lon 99.4 2.5E-12 5.4E-17 135.6 13.5 176 214-408 325-556 (782)
50 PF05673 DUF815: Protein of un 99.4 2.4E-12 5.2E-17 121.7 10.6 151 198-357 13-210 (249)
51 TIGR00763 lon ATP-dependent pr 99.4 2.9E-12 6.3E-17 142.0 12.7 135 211-355 318-506 (775)
52 COG2255 RuvB Holliday junction 99.3 2.9E-12 6.2E-17 122.3 8.6 165 205-380 19-219 (332)
53 PRK14962 DNA polymerase III su 99.3 4.7E-12 1E-16 132.3 10.4 133 205-356 7-191 (472)
54 PRK14956 DNA polymerase III su 99.3 7E-12 1.5E-16 129.7 10.3 134 205-357 11-196 (484)
55 PRK14961 DNA polymerase III su 99.3 1E-11 2.2E-16 126.2 11.3 134 205-357 9-194 (363)
56 KOG2004 Mitochondrial ATP-depe 99.3 2E-11 4.3E-16 128.3 13.2 133 213-355 412-597 (906)
57 PRK07003 DNA polymerase III su 99.3 1.2E-11 2.5E-16 132.9 11.0 138 205-357 9-194 (830)
58 PRK12323 DNA polymerase III su 99.3 6.5E-12 1.4E-16 133.2 8.6 134 205-357 9-199 (700)
59 PRK04195 replication factor C 99.3 3.6E-11 7.8E-16 126.7 14.1 143 204-357 6-176 (482)
60 PRK14964 DNA polymerase III su 99.3 1.1E-11 2.3E-16 129.4 9.8 134 205-357 6-191 (491)
61 PRK14960 DNA polymerase III su 99.3 1.1E-11 2.4E-16 131.8 9.5 134 205-357 8-193 (702)
62 PRK06645 DNA polymerase III su 99.2 3E-11 6.6E-16 126.9 10.9 134 205-357 14-203 (507)
63 PRK05563 DNA polymerase III su 99.2 3.9E-11 8.5E-16 128.1 11.8 134 205-357 9-194 (559)
64 PRK14958 DNA polymerase III su 99.2 1.7E-11 3.7E-16 129.3 8.8 134 205-357 9-194 (509)
65 PHA02544 44 clamp loader, smal 99.2 8.4E-11 1.8E-15 117.0 12.8 135 199-354 10-173 (316)
66 COG2256 MGS1 ATPase related to 99.2 3.1E-11 6.7E-16 120.2 9.0 137 205-354 17-176 (436)
67 KOG0989 Replication factor C, 99.2 3.8E-11 8.3E-16 115.7 9.0 130 204-353 28-200 (346)
68 PRK14963 DNA polymerase III su 99.2 6.7E-11 1.5E-15 124.6 11.7 134 205-357 7-191 (504)
69 PRK07994 DNA polymerase III su 99.2 6E-11 1.3E-15 127.4 11.2 134 205-357 9-194 (647)
70 TIGR02397 dnaX_nterm DNA polym 99.2 5.4E-11 1.2E-15 120.1 10.3 134 205-357 7-192 (355)
71 PRK14949 DNA polymerase III su 99.2 5.9E-11 1.3E-15 129.7 11.0 134 205-357 9-194 (944)
72 PRK07133 DNA polymerase III su 99.2 6.1E-11 1.3E-15 128.1 10.9 134 205-357 11-193 (725)
73 PRK08691 DNA polymerase III su 99.2 3.4E-11 7.4E-16 129.0 8.8 134 205-357 9-194 (709)
74 PRK05896 DNA polymerase III su 99.2 4.6E-11 9.9E-16 126.7 9.6 134 205-357 9-194 (605)
75 PRK14952 DNA polymerase III su 99.2 7.5E-11 1.6E-15 125.8 11.1 134 205-357 6-193 (584)
76 PLN03025 replication factor C 99.2 7.6E-11 1.7E-15 117.8 10.0 137 205-357 6-174 (319)
77 PRK07764 DNA polymerase III su 99.2 9.3E-11 2E-15 129.6 10.8 135 204-357 7-195 (824)
78 PRK14951 DNA polymerase III su 99.2 1.2E-10 2.6E-15 124.7 11.4 134 205-357 9-199 (618)
79 PRK14969 DNA polymerase III su 99.2 6.6E-11 1.4E-15 125.6 9.1 134 205-357 9-194 (527)
80 PRK07940 DNA polymerase III su 99.2 9.3E-11 2E-15 120.0 9.8 134 209-352 2-187 (394)
81 PRK14965 DNA polymerase III su 99.2 7.2E-11 1.6E-15 126.6 9.2 134 205-357 9-194 (576)
82 PRK14957 DNA polymerase III su 99.2 1.3E-10 2.9E-15 122.9 10.6 134 205-357 9-194 (546)
83 PRK14970 DNA polymerase III su 99.1 2.7E-10 5.8E-15 116.0 12.1 134 205-357 10-183 (367)
84 PRK06305 DNA polymerase III su 99.1 2.2E-10 4.8E-15 119.5 11.0 133 205-356 10-195 (451)
85 PRK08451 DNA polymerase III su 99.1 2.9E-10 6.4E-15 119.8 11.6 135 205-358 7-193 (535)
86 PRK13342 recombination factor 99.1 2E-10 4.4E-15 118.7 10.1 136 205-356 5-166 (413)
87 PRK06647 DNA polymerase III su 99.1 2.6E-10 5.7E-15 121.6 11.0 133 205-356 9-193 (563)
88 PRK14959 DNA polymerase III su 99.1 1.8E-10 3.9E-15 122.8 9.5 134 205-357 9-194 (624)
89 PRK14953 DNA polymerase III su 99.1 2.6E-10 5.6E-15 119.8 10.5 134 205-357 9-194 (486)
90 PRK09111 DNA polymerase III su 99.1 4.5E-10 9.8E-15 120.4 11.2 135 204-357 16-207 (598)
91 PRK14955 DNA polymerase III su 99.1 2.5E-10 5.3E-15 117.5 8.2 133 205-356 9-201 (397)
92 COG2607 Predicted ATPase (AAA+ 99.1 9.7E-10 2.1E-14 102.8 11.2 150 199-357 47-242 (287)
93 PRK10787 DNA-binding ATP-depen 99.1 6.5E-10 1.4E-14 122.8 11.4 134 211-355 320-507 (784)
94 PRK14954 DNA polymerase III su 99.1 6.5E-10 1.4E-14 119.4 10.8 133 205-356 9-201 (620)
95 PRK12402 replication factor C 99.0 8.7E-10 1.9E-14 110.4 10.8 137 205-357 8-200 (337)
96 PRK14950 DNA polymerase III su 99.0 8.4E-10 1.8E-14 118.8 11.0 134 205-357 9-195 (585)
97 TIGR02902 spore_lonB ATP-depen 99.0 1E-09 2.2E-14 116.8 10.3 45 310-357 235-279 (531)
98 PRK14948 DNA polymerase III su 99.0 1.5E-09 3.1E-14 117.2 11.4 133 205-356 9-195 (620)
99 PRK06893 DNA replication initi 99.0 1.9E-09 4.2E-14 102.6 10.4 141 203-356 7-176 (229)
100 COG2812 DnaX DNA polymerase II 99.0 1.1E-09 2.4E-14 114.4 9.2 134 206-358 10-195 (515)
101 PRK14971 DNA polymerase III su 99.0 1.9E-09 4E-14 116.3 11.3 134 205-357 10-196 (614)
102 PRK05564 DNA polymerase III su 99.0 8.2E-09 1.8E-13 102.9 13.7 126 210-354 2-165 (313)
103 PRK00440 rfc replication facto 99.0 3.6E-09 7.9E-14 105.0 11.1 137 199-357 6-177 (319)
104 PRK13407 bchI magnesium chelat 98.9 9.4E-09 2E-13 102.9 13.4 134 207-355 3-217 (334)
105 TIGR02639 ClpA ATP-dependent C 98.9 3.9E-09 8.5E-14 116.6 11.5 134 207-356 177-360 (731)
106 PRK08903 DnaA regulatory inact 98.9 3.6E-09 7.8E-14 100.4 9.7 138 204-355 10-171 (227)
107 KOG0735 AAA+-type ATPase [Post 98.9 2.4E-09 5.3E-14 112.8 7.8 160 212-383 408-615 (952)
108 PRK07471 DNA polymerase III su 98.9 2.5E-08 5.4E-13 101.3 14.1 131 205-354 12-213 (365)
109 KOG0736 Peroxisome assembly fa 98.9 4.1E-09 9E-14 112.0 8.5 134 247-386 432-607 (953)
110 TIGR03420 DnaA_homol_Hda DnaA 98.9 7.7E-09 1.7E-13 97.6 9.3 135 205-355 8-173 (226)
111 PRK13341 recombination factor 98.9 7.2E-09 1.6E-13 113.4 10.2 138 205-355 21-182 (725)
112 TIGR02640 gas_vesic_GvpN gas v 98.9 1.6E-08 3.6E-13 98.2 11.6 44 309-355 151-199 (262)
113 PRK11034 clpA ATP-dependent Cl 98.8 8.4E-09 1.8E-13 113.4 9.8 133 213-355 459-667 (758)
114 COG0464 SpoVK ATPases of the A 98.8 1.1E-08 2.4E-13 108.2 9.9 148 232-385 4-193 (494)
115 PRK09112 DNA polymerase III su 98.8 4.3E-08 9.4E-13 99.1 13.3 129 206-353 17-212 (351)
116 CHL00081 chlI Mg-protoporyphyr 98.8 1.2E-08 2.6E-13 102.5 9.1 51 208-271 13-63 (350)
117 TIGR03345 VI_ClpV1 type VI sec 98.8 5.2E-08 1.1E-12 108.9 13.9 133 207-355 182-364 (852)
118 smart00763 AAA_PrkA PrkA AAA d 98.8 2.2E-08 4.7E-13 100.4 9.8 55 209-271 47-103 (361)
119 PRK11034 clpA ATP-dependent Cl 98.8 2.3E-08 4.9E-13 110.0 9.5 129 210-356 184-364 (758)
120 PRK08084 DNA replication initi 98.8 2.9E-08 6.4E-13 94.9 9.2 136 205-354 15-180 (235)
121 TIGR02903 spore_lon_C ATP-depe 98.8 4.4E-08 9.6E-13 106.0 11.6 52 206-270 148-199 (615)
122 TIGR02639 ClpA ATP-dependent C 98.8 3.4E-08 7.3E-13 109.2 10.7 134 213-356 455-664 (731)
123 PRK10865 protein disaggregatio 98.7 2.4E-08 5.2E-13 111.8 8.9 134 207-356 173-356 (857)
124 TIGR00362 DnaA chromosomal rep 98.7 4.3E-08 9.4E-13 101.2 10.2 134 247-385 137-311 (405)
125 COG0714 MoxR-like ATPases [Gen 98.7 3.4E-08 7.4E-13 99.1 9.1 108 246-355 43-204 (329)
126 PRK00149 dnaA chromosomal repl 98.7 3.5E-08 7.6E-13 103.2 9.0 167 204-383 114-321 (450)
127 TIGR01650 PD_CobS cobaltochela 98.7 4E-08 8.7E-13 97.5 8.2 44 309-354 178-233 (327)
128 PRK06620 hypothetical protein; 98.7 8E-08 1.7E-12 90.6 9.8 139 206-356 10-162 (214)
129 TIGR02030 BchI-ChlI magnesium 98.7 7.1E-08 1.5E-12 96.8 10.0 45 309-355 174-220 (337)
130 PRK05342 clpX ATP-dependent pr 98.7 1.1E-07 2.4E-12 98.0 11.5 65 210-274 68-136 (412)
131 TIGR03346 chaperone_ClpB ATP-d 98.7 2.5E-08 5.3E-13 111.9 6.8 134 207-356 168-351 (852)
132 PRK11331 5-methylcytosine-spec 98.7 1.3E-07 2.8E-12 97.3 10.6 46 211-271 174-219 (459)
133 KOG2028 ATPase related to the 98.6 7.2E-08 1.6E-12 95.1 8.1 137 205-354 131-294 (554)
134 TIGR00382 clpX endopeptidase C 98.6 1.7E-07 3.7E-12 96.2 10.9 64 210-273 74-143 (413)
135 PF07728 AAA_5: AAA domain (dy 98.6 1.9E-08 4.2E-13 87.8 3.0 24 248-271 1-24 (139)
136 PRK08727 hypothetical protein; 98.6 1.8E-07 3.9E-12 89.4 9.8 135 204-355 11-176 (233)
137 PF01078 Mg_chelatase: Magnesi 98.6 3.2E-08 7E-13 91.9 4.4 46 211-271 2-47 (206)
138 PRK07399 DNA polymerase III su 98.6 3E-07 6.4E-12 91.7 10.5 152 210-385 2-222 (314)
139 PRK05642 DNA replication initi 98.6 2E-07 4.3E-12 89.2 8.8 139 204-354 11-179 (234)
140 COG0542 clpA ATP-binding subun 98.6 3.7E-07 8.1E-12 99.2 11.4 135 212-356 491-707 (786)
141 TIGR02928 orc1/cdc6 family rep 98.6 6.2E-07 1.3E-11 91.0 12.3 133 212-355 15-213 (365)
142 TIGR00678 holB DNA polymerase 98.6 1.6E-07 3.5E-12 86.4 7.4 102 245-353 13-167 (188)
143 PHA02244 ATPase-like protein 98.5 1.9E-07 4.1E-12 93.9 8.1 30 246-275 119-148 (383)
144 PRK12422 chromosomal replicati 98.5 3E-07 6.4E-12 95.9 9.8 46 310-357 236-287 (445)
145 PRK10865 protein disaggregatio 98.5 5.4E-07 1.2E-11 101.1 12.4 136 211-356 567-781 (857)
146 PRK08058 DNA polymerase III su 98.5 1.6E-07 3.4E-12 94.4 7.2 124 210-352 3-180 (329)
147 PRK14088 dnaA chromosomal repl 98.5 1.6E-07 3.5E-12 97.8 7.4 166 205-384 98-305 (440)
148 CHL00095 clpC Clp protease ATP 98.5 1.1E-07 2.4E-12 106.4 6.5 130 209-354 176-354 (821)
149 PRK09087 hypothetical protein; 98.5 3.6E-07 7.8E-12 86.9 9.0 107 247-357 45-169 (226)
150 PF07726 AAA_3: ATPase family 98.5 2.2E-08 4.7E-13 85.9 0.1 83 248-332 1-129 (131)
151 cd00009 AAA The AAA+ (ATPases 98.5 1.8E-07 3.8E-12 80.5 5.8 26 245-270 18-43 (151)
152 PRK05707 DNA polymerase III su 98.5 1E-06 2.3E-11 88.3 11.2 102 245-353 21-177 (328)
153 CHL00095 clpC Clp protease ATP 98.5 9.8E-07 2.1E-11 98.9 11.8 52 212-271 509-564 (821)
154 PRK13531 regulatory ATPase Rav 98.4 5E-07 1.1E-11 93.8 8.5 106 246-353 39-193 (498)
155 PRK14086 dnaA chromosomal repl 98.4 6.3E-07 1.4E-11 95.7 9.4 106 247-357 315-462 (617)
156 TIGR03346 chaperone_ClpB ATP-d 98.4 9.3E-07 2E-11 99.4 11.2 134 212-355 565-777 (852)
157 TIGR03345 VI_ClpV1 type VI sec 98.4 6.9E-07 1.5E-11 100.0 9.8 52 212-271 566-621 (852)
158 PTZ00112 origin recognition co 98.4 3.6E-06 7.7E-11 92.0 14.3 47 308-356 901-951 (1164)
159 PRK00411 cdc6 cell division co 98.4 4.7E-06 1E-10 85.4 13.7 51 211-270 29-79 (394)
160 TIGR00602 rad24 checkpoint pro 98.3 8.4E-06 1.8E-10 88.1 14.7 67 198-274 72-138 (637)
161 TIGR02442 Cob-chelat-sub cobal 98.3 1.2E-06 2.7E-11 95.2 8.5 48 210-270 2-49 (633)
162 PF00308 Bac_DnaA: Bacterial d 98.3 1.1E-06 2.4E-11 83.1 7.2 107 247-357 35-182 (219)
163 KOG1969 DNA replication checkp 98.3 3.4E-06 7.4E-11 89.9 11.0 142 203-346 262-473 (877)
164 PRK06964 DNA polymerase III su 98.3 4.8E-06 1E-10 83.8 11.6 43 307-352 160-202 (342)
165 COG1224 TIP49 DNA helicase TIP 98.3 1.5E-05 3.3E-10 78.9 14.4 53 211-271 38-90 (450)
166 smart00350 MCM minichromosome 98.3 1.4E-06 3E-11 92.6 7.6 46 309-356 343-402 (509)
167 COG0470 HolB ATPase involved i 98.3 1.2E-06 2.6E-11 87.0 6.4 97 247-346 25-173 (325)
168 PRK14087 dnaA chromosomal repl 98.2 4E-06 8.7E-11 87.7 9.1 73 311-385 241-320 (450)
169 PF13177 DNA_pol3_delta2: DNA 98.2 2.3E-06 5.1E-11 77.1 6.3 90 244-340 17-160 (162)
170 KOG1942 DNA helicase, TBP-inte 98.1 6.7E-05 1.4E-09 72.6 14.1 52 212-271 38-89 (456)
171 PF03215 Rad17: Rad17 cell cyc 98.1 3.5E-06 7.6E-11 89.2 5.7 67 198-274 7-73 (519)
172 TIGR00390 hslU ATP-dependent p 98.1 4.2E-06 9E-11 85.5 5.3 65 213-277 13-78 (441)
173 PRK06871 DNA polymerase III su 98.0 3.7E-05 8.1E-10 76.8 11.5 101 245-352 23-177 (325)
174 KOG0991 Replication factor C, 98.0 6.8E-06 1.5E-10 77.0 5.3 56 203-271 18-73 (333)
175 PRK06090 DNA polymerase III su 98.0 5E-05 1.1E-09 75.8 11.9 101 244-351 23-177 (319)
176 COG1239 ChlI Mg-chelatase subu 98.0 1.4E-05 3E-10 81.1 7.8 50 209-271 14-63 (423)
177 TIGR02031 BchD-ChlD magnesium 98.0 1.2E-05 2.7E-10 86.7 7.6 108 246-355 16-175 (589)
178 COG1474 CDC6 Cdc6-related prot 98.0 6E-05 1.3E-09 76.7 12.1 131 214-355 19-204 (366)
179 PRK08939 primosomal protein Dn 98.0 9.5E-06 2E-10 80.6 5.4 58 209-271 124-181 (306)
180 PRK05201 hslU ATP-dependent pr 97.9 1.1E-05 2.3E-10 82.6 5.4 63 214-276 17-80 (443)
181 PRK08769 DNA polymerase III su 97.9 4.7E-05 1E-09 76.0 9.8 41 308-351 142-182 (319)
182 PRK07993 DNA polymerase III su 97.9 2.4E-05 5.2E-10 78.7 7.8 102 244-352 22-178 (334)
183 PRK07952 DNA replication prote 97.9 2.1E-05 4.6E-10 75.5 6.8 60 205-271 65-124 (244)
184 PHA02624 large T antigen; Prov 97.9 1.5E-05 3.3E-10 84.5 5.9 95 242-340 427-561 (647)
185 PRK15455 PrkA family serine pr 97.9 1.6E-05 3.4E-10 84.1 5.2 60 205-271 69-128 (644)
186 PRK08118 topology modulation p 97.9 1.7E-05 3.7E-10 71.9 4.8 99 248-356 3-103 (167)
187 PF08740 BCS1_N: BCS1 N termin 97.9 0.0011 2.3E-08 61.0 16.8 134 59-214 26-187 (187)
188 PRK08699 DNA polymerase III su 97.8 1.3E-05 2.9E-10 80.3 4.1 40 309-351 143-182 (325)
189 PF12775 AAA_7: P-loop contain 97.8 4E-05 8.7E-10 74.9 7.3 44 309-355 148-194 (272)
190 PRK07261 topology modulation p 97.8 1.2E-05 2.6E-10 73.1 3.4 100 249-355 3-102 (171)
191 PRK12377 putative replication 97.8 3.9E-05 8.4E-10 73.9 6.6 26 246-271 101-126 (248)
192 PRK09862 putative ATP-dependen 97.8 2.3E-05 5.1E-10 82.6 5.2 47 210-271 189-235 (506)
193 PF06309 Torsin: Torsin; Inte 97.8 4.7E-05 1E-09 65.3 5.5 53 213-271 26-78 (127)
194 PF06068 TIP49: TIP49 C-termin 97.7 3.9E-05 8.4E-10 76.9 5.7 54 210-271 22-75 (398)
195 smart00382 AAA ATPases associa 97.7 2E-05 4.3E-10 66.7 3.2 28 246-273 2-29 (148)
196 KOG0741 AAA+-type ATPase [Post 97.7 5.3E-05 1.1E-09 78.4 5.9 103 246-351 538-683 (744)
197 COG0606 Predicted ATPase with 97.7 2.7E-05 5.9E-10 80.1 3.7 49 208-271 175-223 (490)
198 PRK08181 transposase; Validate 97.7 6.2E-05 1.3E-09 73.4 5.5 26 246-271 106-131 (269)
199 TIGR00368 Mg chelatase-related 97.7 5.6E-05 1.2E-09 79.9 5.6 48 209-271 189-236 (499)
200 PRK08116 hypothetical protein; 97.6 9E-05 2E-09 72.3 6.3 26 246-271 114-139 (268)
201 COG1484 DnaC DNA replication p 97.6 0.0001 2.2E-09 71.4 6.3 54 210-271 77-130 (254)
202 PF13207 AAA_17: AAA domain; P 97.6 4E-05 8.6E-10 64.9 2.7 104 249-356 2-114 (121)
203 PRK04132 replication factor C 97.6 0.00018 3.9E-09 80.0 8.3 105 249-356 567-704 (846)
204 COG0593 DnaA ATPase involved i 97.6 0.00037 8E-09 71.4 9.7 141 205-357 80-260 (408)
205 KOG0990 Replication factor C, 97.5 8.8E-05 1.9E-09 72.6 4.6 139 203-357 32-206 (360)
206 PRK05818 DNA polymerase III su 97.5 0.00054 1.2E-08 66.1 9.8 91 244-341 5-147 (261)
207 PRK00131 aroK shikimate kinase 97.5 7.2E-05 1.6E-09 67.2 3.6 32 244-275 2-33 (175)
208 KOG1970 Checkpoint RAD17-RFC c 97.5 6.8E-05 1.5E-09 78.0 3.7 70 197-274 69-138 (634)
209 KOG2035 Replication factor C, 97.5 0.00022 4.7E-09 68.7 6.6 138 205-358 6-203 (351)
210 PRK11608 pspF phage shock prot 97.5 0.00023 5E-09 71.5 6.9 51 210-271 4-54 (326)
211 PRK13765 ATP-dependent proteas 97.5 0.00012 2.7E-09 79.3 5.1 52 205-271 24-75 (637)
212 PRK06921 hypothetical protein; 97.5 0.00022 4.7E-09 69.6 6.4 26 246-271 117-142 (266)
213 PTZ00111 DNA replication licen 97.4 0.00035 7.7E-09 77.6 8.2 45 309-355 600-658 (915)
214 PRK06835 DNA replication prote 97.4 0.00016 3.5E-09 72.5 5.1 25 247-271 184-208 (329)
215 PRK11388 DNA-binding transcrip 97.4 0.00034 7.4E-09 76.5 8.1 52 209-271 322-373 (638)
216 TIGR03015 pepcterm_ATPase puta 97.4 0.0017 3.6E-08 62.9 11.9 24 248-271 45-68 (269)
217 PF01695 IstB_IS21: IstB-like 97.4 9.9E-05 2.1E-09 67.6 3.0 27 245-271 46-72 (178)
218 PF13671 AAA_33: AAA domain; P 97.4 9.9E-05 2.2E-09 64.2 2.7 23 249-271 2-24 (143)
219 TIGR01817 nifA Nif-specific re 97.4 0.00038 8.2E-09 74.6 7.2 53 208-271 192-244 (534)
220 TIGR00764 lon_rel lon-related 97.3 0.00018 3.9E-09 78.0 4.4 48 209-271 15-62 (608)
221 PF00910 RNA_helicase: RNA hel 97.3 0.00014 3.1E-09 60.7 2.9 23 249-271 1-23 (107)
222 PRK06526 transposase; Provisio 97.3 0.00016 3.4E-09 70.1 3.0 26 246-271 98-123 (254)
223 PHA00729 NTP-binding motif con 97.2 0.00022 4.8E-09 67.5 3.1 25 247-271 18-42 (226)
224 cd00464 SK Shikimate kinase (S 97.2 0.00023 5.1E-09 62.6 3.0 29 248-276 1-29 (154)
225 PF13086 AAA_11: AAA domain; P 97.2 0.00035 7.5E-09 65.3 4.0 22 249-270 20-41 (236)
226 PF07724 AAA_2: AAA domain (Cd 97.2 0.00031 6.7E-09 63.9 3.5 27 246-272 3-29 (171)
227 PRK03839 putative kinase; Prov 97.2 0.00027 5.9E-09 64.4 3.0 28 249-276 3-30 (180)
228 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.0003 6.4E-09 64.1 3.2 24 249-272 2-25 (183)
229 TIGR02974 phageshock_pspF psp 97.2 0.00053 1.1E-08 68.9 5.3 46 215-271 2-47 (329)
230 PRK13947 shikimate kinase; Pro 97.2 0.00031 6.8E-09 63.2 3.3 30 248-277 3-32 (171)
231 PRK14737 gmk guanylate kinase; 97.1 0.00047 1E-08 63.6 4.4 27 245-271 3-29 (186)
232 PRK14531 adenylate kinase; Pro 97.1 0.00037 8E-09 63.9 3.6 27 247-273 3-29 (183)
233 PF03969 AFG1_ATPase: AFG1-lik 97.1 0.00032 6.9E-09 71.3 3.4 30 243-272 59-88 (362)
234 COG1855 ATPase (PilT family) [ 97.1 0.00064 1.4E-08 69.4 5.4 105 139-271 169-288 (604)
235 COG1220 HslU ATP-dependent pro 97.1 0.0052 1.1E-07 60.9 11.4 58 214-271 17-75 (444)
236 PRK05917 DNA polymerase III su 97.1 0.0018 3.9E-08 63.7 8.2 91 244-341 17-154 (290)
237 PRK13949 shikimate kinase; Pro 97.1 0.00044 9.5E-09 62.7 3.4 30 247-276 2-31 (169)
238 KOG0478 DNA replication licens 97.1 0.00083 1.8E-08 71.6 5.8 140 213-356 430-628 (804)
239 PRK14532 adenylate kinase; Pro 97.1 0.00042 9.1E-09 63.6 3.2 26 248-273 2-27 (188)
240 PHA02774 E1; Provisional 97.0 0.00076 1.6E-08 71.6 5.4 30 242-271 430-459 (613)
241 TIGR01313 therm_gnt_kin carboh 97.0 0.00041 8.9E-09 62.0 2.9 27 249-275 1-27 (163)
242 PRK07276 DNA polymerase III su 97.0 0.0057 1.2E-07 60.3 11.1 50 293-350 122-171 (290)
243 COG1219 ClpX ATP-dependent pro 97.0 0.00031 6.8E-09 68.8 2.1 62 211-278 59-129 (408)
244 PRK07132 DNA polymerase III su 97.0 0.0026 5.5E-08 63.1 8.5 100 245-351 17-159 (299)
245 PF13238 AAA_18: AAA domain; P 97.0 0.00043 9.3E-09 58.6 2.6 23 249-271 1-23 (129)
246 cd02021 GntK Gluconate kinase 97.0 0.00049 1.1E-08 60.6 3.0 27 249-275 2-28 (150)
247 PF13191 AAA_16: AAA ATPase do 97.0 0.00043 9.3E-09 62.6 2.7 29 245-273 23-51 (185)
248 cd02020 CMPK Cytidine monophos 97.0 0.00054 1.2E-08 59.7 3.2 30 249-278 2-31 (147)
249 PRK09183 transposase/IS protei 97.0 0.0005 1.1E-08 66.8 3.2 25 246-270 102-126 (259)
250 PRK00625 shikimate kinase; Pro 97.0 0.00051 1.1E-08 62.6 2.9 29 248-276 2-30 (173)
251 PF13245 AAA_19: Part of AAA d 97.0 0.00074 1.6E-08 52.9 3.4 23 248-270 12-35 (76)
252 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00059 1.3E-08 62.2 3.2 26 248-273 5-30 (188)
253 PLN03210 Resistant to P. syrin 96.9 0.0027 5.8E-08 74.2 9.3 58 203-271 175-232 (1153)
254 cd01428 ADK Adenylate kinase ( 96.9 0.00062 1.3E-08 62.4 3.2 25 249-273 2-26 (194)
255 PF00158 Sigma54_activat: Sigm 96.9 0.001 2.2E-08 60.3 4.6 47 214-271 1-47 (168)
256 PRK06762 hypothetical protein; 96.9 0.00071 1.5E-08 60.7 3.5 26 246-271 2-27 (166)
257 cd02019 NK Nucleoside/nucleoti 96.9 0.00086 1.9E-08 51.4 3.1 22 249-270 2-23 (69)
258 COG0703 AroK Shikimate kinase 96.9 0.00081 1.8E-08 60.9 3.3 31 247-277 3-33 (172)
259 COG1102 Cmk Cytidylate kinase 96.9 0.00071 1.5E-08 60.3 2.8 27 249-275 3-29 (179)
260 PF13401 AAA_22: AAA domain; P 96.9 0.00065 1.4E-08 58.0 2.5 25 247-271 5-29 (131)
261 KOG0480 DNA replication licens 96.9 0.004 8.6E-08 66.1 8.6 142 211-357 344-545 (764)
262 cd00227 CPT Chloramphenicol (C 96.9 0.00091 2E-08 60.8 3.6 26 247-272 3-28 (175)
263 PRK08154 anaerobic benzoate ca 96.8 0.002 4.4E-08 64.2 6.3 55 216-275 108-162 (309)
264 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0022 4.7E-08 64.3 6.4 53 211-271 59-113 (358)
265 PRK06217 hypothetical protein; 96.8 0.00082 1.8E-08 61.6 3.1 99 248-353 3-105 (183)
266 PRK13946 shikimate kinase; Pro 96.8 0.00093 2E-08 61.3 3.5 33 246-278 10-42 (184)
267 PRK14527 adenylate kinase; Pro 96.8 0.001 2.2E-08 61.4 3.7 27 246-272 6-32 (191)
268 PRK02496 adk adenylate kinase; 96.8 0.00085 1.9E-08 61.3 3.2 24 249-272 4-27 (184)
269 PRK13406 bchD magnesium chelat 96.8 0.0017 3.7E-08 70.0 5.9 97 247-345 26-173 (584)
270 KOG3347 Predicted nucleotide k 96.8 0.00089 1.9E-08 58.9 3.0 29 247-275 8-36 (176)
271 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0012 2.6E-08 57.4 3.8 30 244-273 20-49 (133)
272 PF05272 VirE: Virulence-assoc 96.8 0.0023 5E-08 59.6 5.9 30 242-271 48-77 (198)
273 PRK14530 adenylate kinase; Pro 96.8 0.001 2.2E-08 62.6 3.5 27 248-274 5-31 (215)
274 PRK13948 shikimate kinase; Pro 96.8 0.0011 2.4E-08 60.9 3.7 34 244-277 8-41 (182)
275 cd01120 RecA-like_NTPases RecA 96.8 0.00095 2.1E-08 58.6 3.0 23 249-271 2-24 (165)
276 COG0563 Adk Adenylate kinase a 96.8 0.001 2.2E-08 61.0 3.2 27 248-274 2-28 (178)
277 PLN02200 adenylate kinase fami 96.8 0.0012 2.6E-08 63.2 3.8 27 246-272 43-69 (234)
278 PRK06851 hypothetical protein; 96.8 0.0049 1.1E-07 62.6 8.2 82 245-340 29-110 (367)
279 KOG1968 Replication factor C, 96.7 0.0033 7.3E-08 70.2 7.6 151 205-357 313-505 (871)
280 PRK05057 aroK shikimate kinase 96.7 0.0012 2.6E-08 60.1 3.4 32 246-277 4-35 (172)
281 TIGR02237 recomb_radB DNA repa 96.7 0.0013 2.9E-08 61.2 3.8 29 242-270 8-36 (209)
282 TIGR01613 primase_Cterm phage/ 96.7 0.01 2.2E-07 58.9 10.3 54 212-272 48-102 (304)
283 TIGR01351 adk adenylate kinase 96.7 0.0012 2.6E-08 61.8 3.2 24 249-272 2-25 (210)
284 PRK14528 adenylate kinase; Pro 96.7 0.0013 2.9E-08 60.5 3.4 26 248-273 3-28 (186)
285 PF14532 Sigma54_activ_2: Sigm 96.7 0.0014 3.1E-08 57.1 3.3 45 216-271 2-46 (138)
286 PRK00279 adk adenylate kinase; 96.7 0.0013 2.7E-08 61.9 3.2 25 249-273 3-27 (215)
287 PF05729 NACHT: NACHT domain 96.7 0.0014 3.1E-08 57.8 3.3 25 247-271 1-25 (166)
288 TIGR01618 phage_P_loop phage n 96.7 0.00089 1.9E-08 63.3 2.0 23 246-268 12-34 (220)
289 PRK03731 aroL shikimate kinase 96.6 0.0015 3.2E-08 58.9 3.3 31 247-277 3-33 (171)
290 PRK08233 hypothetical protein; 96.6 0.0014 3.1E-08 59.3 3.1 24 248-271 5-28 (182)
291 PRK06547 hypothetical protein; 96.6 0.0021 4.5E-08 58.5 4.0 32 244-275 13-44 (172)
292 cd01394 radB RadB. The archaea 96.6 0.0018 3.9E-08 60.8 3.7 29 242-270 15-43 (218)
293 PRK05541 adenylylsulfate kinas 96.6 0.0018 3.9E-08 58.7 3.5 26 246-271 7-32 (176)
294 PRK13764 ATPase; Provisional 96.6 0.0022 4.8E-08 69.0 4.8 26 246-271 257-282 (602)
295 TIGR02322 phosphon_PhnN phosph 96.6 0.0016 3.5E-08 59.1 3.2 25 248-272 3-27 (179)
296 COG1936 Predicted nucleotide k 96.6 0.0016 3.4E-08 58.8 2.9 24 249-273 3-26 (180)
297 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.0016 3.5E-08 63.2 3.3 28 242-269 32-59 (259)
298 PF00437 T2SE: Type II/IV secr 96.6 0.002 4.4E-08 62.6 3.8 54 208-272 100-153 (270)
299 PF00406 ADK: Adenylate kinase 96.6 0.0013 2.9E-08 58.1 2.3 22 251-272 1-22 (151)
300 PTZ00088 adenylate kinase 1; P 96.5 0.0017 3.8E-08 61.8 3.2 26 248-273 8-33 (229)
301 PRK04040 adenylate kinase; Pro 96.5 0.0019 4E-08 59.7 3.2 24 247-270 3-26 (188)
302 PF12774 AAA_6: Hydrolytic ATP 96.5 0.0063 1.4E-07 58.1 6.8 27 245-271 31-57 (231)
303 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.0022 4.7E-08 61.3 3.7 28 242-269 17-44 (237)
304 PRK14526 adenylate kinase; Pro 96.5 0.0019 4.1E-08 60.8 3.2 25 249-273 3-27 (211)
305 PF13604 AAA_30: AAA domain; P 96.5 0.0039 8.4E-08 57.9 5.2 25 247-271 19-43 (196)
306 COG0542 clpA ATP-binding subun 96.5 0.01 2.2E-07 65.4 9.1 50 209-271 167-216 (786)
307 PRK04182 cytidylate kinase; Pr 96.5 0.002 4.3E-08 58.2 3.1 28 249-276 3-30 (180)
308 KOG1051 Chaperone HSP104 and r 96.5 0.004 8.6E-08 69.4 5.9 53 213-271 563-616 (898)
309 cd01124 KaiC KaiC is a circadi 96.5 0.002 4.4E-08 58.5 3.1 22 249-270 2-23 (187)
310 PRK09361 radB DNA repair and r 96.4 0.0027 5.8E-08 60.0 3.8 29 242-270 19-47 (225)
311 cd01130 VirB11-like_ATPase Typ 96.4 0.0026 5.6E-08 58.5 3.5 27 245-271 24-50 (186)
312 PRK06851 hypothetical protein; 96.4 0.014 3E-07 59.4 8.9 78 245-338 213-290 (367)
313 COG5271 MDN1 AAA ATPase contai 96.4 0.0033 7.1E-08 72.7 4.6 106 246-355 1543-1704(4600)
314 PF13521 AAA_28: AAA domain; P 96.4 0.0018 3.9E-08 58.0 2.2 24 249-273 2-25 (163)
315 TIGR02173 cyt_kin_arch cytidyl 96.4 0.0025 5.3E-08 57.1 3.1 27 249-275 3-29 (171)
316 PF13173 AAA_14: AAA domain 96.4 0.0029 6.4E-08 54.4 3.4 25 247-271 3-27 (128)
317 PRK10078 ribose 1,5-bisphospho 96.4 0.0026 5.5E-08 58.4 3.1 27 247-273 3-29 (186)
318 PHA02530 pseT polynucleotide k 96.4 0.0026 5.6E-08 62.7 3.4 25 247-271 3-28 (300)
319 PRK00300 gmk guanylate kinase; 96.4 0.0032 7E-08 58.4 3.7 27 245-271 4-30 (205)
320 TIGR03574 selen_PSTK L-seryl-t 96.3 0.0026 5.6E-08 61.2 3.0 23 249-271 2-24 (249)
321 PRK06696 uridine kinase; Valid 96.3 0.0063 1.4E-07 57.6 5.6 26 246-271 22-47 (223)
322 cd01129 PulE-GspE PulE/GspE Th 96.3 0.0054 1.2E-07 59.7 5.3 49 209-271 57-105 (264)
323 COG4088 Predicted nucleotide k 96.3 0.0027 5.8E-08 58.9 2.9 23 249-271 4-26 (261)
324 cd02027 APSK Adenosine 5'-phos 96.3 0.0029 6.3E-08 56.1 3.1 22 249-270 2-23 (149)
325 PRK06067 flagellar accessory p 96.3 0.0035 7.5E-08 59.7 3.8 28 242-269 21-48 (234)
326 KOG2227 Pre-initiation complex 96.3 0.03 6.4E-07 57.9 10.6 139 210-357 148-341 (529)
327 COG0467 RAD55 RecA-superfamily 96.3 0.0033 7.1E-08 60.9 3.7 29 242-270 19-47 (260)
328 KOG0745 Putative ATP-dependent 96.3 0.0018 4E-08 65.9 1.9 32 246-277 226-257 (564)
329 PRK15429 formate hydrogenlyase 96.3 0.0046 9.9E-08 68.3 5.1 52 209-271 373-424 (686)
330 PRK12339 2-phosphoglycerate ki 96.3 0.0032 6.9E-08 58.6 3.3 27 246-272 3-29 (197)
331 PF06745 KaiC: KaiC; InterPro 96.3 0.0024 5.2E-08 60.4 2.5 27 242-268 15-41 (226)
332 TIGR02782 TrbB_P P-type conjug 96.3 0.0034 7.3E-08 62.3 3.7 26 246-271 132-157 (299)
333 PRK10416 signal recognition pa 96.3 0.005 1.1E-07 61.6 4.8 26 246-271 114-139 (318)
334 PF00493 MCM: MCM2/3/5 family 96.3 0.0014 3E-08 66.0 0.8 46 310-357 165-224 (331)
335 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.0038 8.2E-08 59.1 3.7 28 242-269 16-43 (229)
336 TIGR00235 udk uridine kinase. 96.3 0.0036 7.9E-08 58.4 3.5 24 248-271 8-31 (207)
337 PLN02674 adenylate kinase 96.2 0.0038 8.2E-08 60.0 3.6 27 246-272 31-57 (244)
338 PF00485 PRK: Phosphoribulokin 96.2 0.0029 6.3E-08 58.5 2.7 23 249-271 2-24 (194)
339 PRK01184 hypothetical protein; 96.2 0.0033 7.1E-08 57.4 3.0 25 248-273 3-27 (184)
340 PRK00771 signal recognition pa 96.2 0.0056 1.2E-07 63.8 5.0 51 220-271 70-120 (437)
341 TIGR00064 ftsY signal recognit 96.2 0.0078 1.7E-07 58.9 5.8 27 245-271 71-97 (272)
342 PRK04328 hypothetical protein; 96.2 0.0041 9E-08 60.0 3.7 28 242-269 19-46 (249)
343 PRK15424 propionate catabolism 96.2 0.0048 1E-07 65.9 4.6 50 209-269 216-265 (538)
344 PRK00889 adenylylsulfate kinas 96.2 0.0044 9.5E-08 56.1 3.7 26 246-271 4-29 (175)
345 PF00519 PPV_E1_C: Papillomavi 96.2 0.0076 1.7E-07 61.0 5.6 30 242-271 258-287 (432)
346 TIGR02012 tigrfam_recA protein 96.2 0.004 8.7E-08 62.2 3.7 29 242-270 51-79 (321)
347 PRK09825 idnK D-gluconate kina 96.2 0.0037 8E-08 57.1 3.1 27 247-273 4-30 (176)
348 PF13555 AAA_29: P-loop contai 96.2 0.0051 1.1E-07 46.2 3.3 23 248-270 25-47 (62)
349 PF03266 NTPase_1: NTPase; In 96.2 0.0035 7.7E-08 56.8 3.0 22 249-270 2-23 (168)
350 PRK14529 adenylate kinase; Pro 96.2 0.0039 8.4E-08 59.2 3.2 26 249-274 3-28 (223)
351 TIGR03263 guanyl_kin guanylate 96.2 0.0037 7.9E-08 56.7 2.9 25 247-271 2-26 (180)
352 PRK10820 DNA-binding transcrip 96.2 0.006 1.3E-07 65.2 5.0 52 208-270 200-251 (520)
353 PRK08533 flagellar accessory p 96.1 0.005 1.1E-07 58.7 3.9 28 242-269 20-47 (230)
354 COG3829 RocR Transcriptional r 96.1 0.0075 1.6E-07 63.3 5.3 56 205-271 238-293 (560)
355 PRK12338 hypothetical protein; 96.1 0.0042 9.1E-08 61.8 3.3 27 246-272 4-30 (319)
356 TIGR02524 dot_icm_DotB Dot/Icm 96.1 0.0068 1.5E-07 61.6 4.8 25 247-271 135-159 (358)
357 TIGR02655 circ_KaiC circadian 96.1 0.0045 9.8E-08 65.5 3.7 27 242-268 17-43 (484)
358 TIGR02329 propionate_PrpR prop 96.1 0.0057 1.2E-07 65.3 4.4 53 208-271 208-260 (526)
359 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.0047 1E-07 58.5 3.4 28 242-269 15-42 (235)
360 cd02023 UMPK Uridine monophosp 96.1 0.0044 9.5E-08 57.3 3.1 23 249-271 2-24 (198)
361 cd01131 PilT Pilus retraction 96.1 0.0044 9.5E-08 57.6 3.1 24 248-271 3-26 (198)
362 PRK13975 thymidylate kinase; P 96.1 0.0047 1E-07 56.8 3.2 26 247-272 3-28 (196)
363 PRK13833 conjugal transfer pro 96.0 0.0053 1.1E-07 61.4 3.6 26 246-271 144-169 (323)
364 PRK05973 replicative DNA helic 96.0 0.0057 1.2E-07 58.5 3.6 29 242-270 60-88 (237)
365 PRK05480 uridine/cytidine kina 96.0 0.0055 1.2E-07 57.2 3.5 26 246-271 6-31 (209)
366 PRK14738 gmk guanylate kinase; 96.0 0.0049 1.1E-07 57.7 3.1 25 245-269 12-36 (206)
367 TIGR03499 FlhF flagellar biosy 96.0 0.0081 1.7E-07 59.1 4.8 26 246-271 194-219 (282)
368 COG2804 PulE Type II secretory 96.0 0.0094 2E-07 62.2 5.4 51 208-273 234-285 (500)
369 cd00983 recA RecA is a bacter 96.0 0.0061 1.3E-07 61.0 3.6 29 242-270 51-79 (325)
370 PF01637 Arch_ATPase: Archaeal 96.0 0.0064 1.4E-07 56.7 3.6 26 246-271 20-45 (234)
371 cd01393 recA_like RecA is a b 95.9 0.0066 1.4E-07 57.1 3.6 29 242-270 15-43 (226)
372 TIGR00376 DNA helicase, putati 95.9 0.011 2.4E-07 64.6 5.7 42 214-270 156-197 (637)
373 cd00071 GMPK Guanosine monopho 95.9 0.006 1.3E-07 53.3 2.9 23 249-271 2-24 (137)
374 PRK13894 conjugal transfer ATP 95.9 0.0069 1.5E-07 60.6 3.7 26 245-270 147-172 (319)
375 PLN02459 probable adenylate ki 95.9 0.0076 1.7E-07 58.4 3.8 26 248-273 31-56 (261)
376 PRK11889 flhF flagellar biosyn 95.9 0.012 2.6E-07 60.2 5.4 50 218-271 217-266 (436)
377 PRK12723 flagellar biosynthesi 95.9 0.012 2.6E-07 60.4 5.3 27 245-271 173-199 (388)
378 PRK11545 gntK gluconate kinase 95.9 0.0052 1.1E-07 55.3 2.4 22 252-273 1-22 (163)
379 PF13479 AAA_24: AAA domain 95.8 0.0044 9.5E-08 58.3 2.0 20 247-266 4-23 (213)
380 COG3378 Phage associated DNA p 95.8 0.053 1.1E-06 57.5 10.1 53 211-271 201-255 (517)
381 PF00448 SRP54: SRP54-type pro 95.8 0.006 1.3E-07 56.8 2.8 26 246-271 1-26 (196)
382 PRK12337 2-phosphoglycerate ki 95.8 0.018 3.9E-07 60.0 6.5 28 245-272 254-281 (475)
383 PRK14974 cell division protein 95.8 0.014 3E-07 58.8 5.6 26 246-271 140-165 (336)
384 cd00820 PEPCK_HprK Phosphoenol 95.8 0.0061 1.3E-07 51.0 2.5 23 245-267 14-36 (107)
385 PF08477 Miro: Miro-like prote 95.8 0.0072 1.6E-07 50.5 3.0 24 249-272 2-25 (119)
386 COG4619 ABC-type uncharacteriz 95.8 0.0068 1.5E-07 54.7 2.8 26 246-271 29-54 (223)
387 COG1618 Predicted nucleotide k 95.8 0.0073 1.6E-07 54.0 3.0 25 247-271 6-30 (179)
388 PLN02199 shikimate kinase 95.8 0.016 3.5E-07 57.0 5.7 31 246-276 102-132 (303)
389 cd02028 UMPK_like Uridine mono 95.8 0.0072 1.6E-07 55.3 3.0 23 249-271 2-24 (179)
390 PRK13900 type IV secretion sys 95.8 0.012 2.7E-07 59.1 4.9 27 245-271 159-185 (332)
391 TIGR03880 KaiC_arch_3 KaiC dom 95.7 0.0092 2E-07 56.3 3.7 28 242-269 12-39 (224)
392 PRK04220 2-phosphoglycerate ki 95.7 0.016 3.4E-07 57.3 5.4 29 245-273 91-119 (301)
393 TIGR02236 recomb_radA DNA repa 95.7 0.0082 1.8E-07 59.7 3.5 29 242-270 91-119 (310)
394 PF00005 ABC_tran: ABC transpo 95.7 0.0042 9.1E-08 53.6 1.2 28 244-271 9-36 (137)
395 COG3842 PotA ABC-type spermidi 95.7 0.0055 1.2E-07 61.8 2.2 27 245-271 28-56 (352)
396 COG1241 MCM2 Predicted ATPase 95.7 0.0063 1.4E-07 66.2 2.7 24 248-271 321-344 (682)
397 PRK06761 hypothetical protein; 95.7 0.008 1.7E-07 59.0 3.1 25 247-271 4-28 (282)
398 PRK14722 flhF flagellar biosyn 95.7 0.0092 2E-07 60.8 3.7 25 246-270 137-161 (374)
399 TIGR02525 plasmid_TraJ plasmid 95.7 0.015 3.2E-07 59.4 5.1 25 247-271 150-174 (372)
400 cd00984 DnaB_C DnaB helicase C 95.7 0.0098 2.1E-07 56.6 3.6 29 242-270 9-37 (242)
401 TIGR02533 type_II_gspE general 95.7 0.016 3.4E-07 61.4 5.4 49 208-271 218-267 (486)
402 cd01918 HprK_C HprK/P, the bif 95.7 0.0088 1.9E-07 53.1 3.0 24 246-269 14-37 (149)
403 PRK12724 flagellar biosynthesi 95.6 0.021 4.6E-07 58.9 6.1 25 246-270 223-247 (432)
404 cd03115 SRP The signal recogni 95.6 0.0091 2E-07 53.9 3.1 23 249-271 3-25 (173)
405 PRK10867 signal recognition pa 95.6 0.014 3E-07 60.8 4.8 51 220-271 74-125 (433)
406 PRK05022 anaerobic nitric oxid 95.6 0.016 3.4E-07 61.9 5.2 51 210-271 185-235 (509)
407 cd02024 NRK1 Nicotinamide ribo 95.6 0.0097 2.1E-07 54.9 3.1 23 249-271 2-24 (187)
408 PRK13808 adenylate kinase; Pro 95.6 0.0094 2E-07 59.8 3.2 24 249-272 3-26 (333)
409 PRK10536 hypothetical protein; 95.6 0.0095 2.1E-07 57.5 3.1 22 248-269 76-97 (262)
410 PTZ00301 uridine kinase; Provi 95.6 0.0096 2.1E-07 56.0 3.1 22 249-270 6-27 (210)
411 PRK09270 nucleoside triphospha 95.6 0.029 6.3E-07 53.3 6.4 26 246-271 33-58 (229)
412 PF10443 RNA12: RNA12 protein; 95.6 0.16 3.5E-06 52.3 12.0 79 321-401 198-298 (431)
413 COG4133 CcmA ABC-type transpor 95.5 0.0098 2.1E-07 54.5 2.9 25 247-271 29-53 (209)
414 PF02367 UPF0079: Uncharacteri 95.5 0.011 2.4E-07 50.8 3.1 31 244-274 13-43 (123)
415 COG2805 PilT Tfp pilus assembl 95.5 0.017 3.7E-07 56.6 4.6 47 206-271 103-150 (353)
416 PRK07667 uridine kinase; Provi 95.5 0.0098 2.1E-07 55.0 3.0 25 247-271 18-42 (193)
417 cd00046 DEXDc DEAD-like helica 95.5 0.011 2.4E-07 49.6 3.1 25 247-271 1-25 (144)
418 PRK09376 rho transcription ter 95.5 0.01 2.2E-07 60.6 3.2 23 249-271 172-194 (416)
419 KOG3354 Gluconate kinase [Carb 95.5 0.013 2.8E-07 52.0 3.5 34 244-277 10-43 (191)
420 cd02025 PanK Pantothenate kina 95.5 0.01 2.2E-07 56.3 3.0 23 249-271 2-24 (220)
421 PRK09354 recA recombinase A; P 95.5 0.012 2.6E-07 59.4 3.7 29 242-270 56-84 (349)
422 PRK04301 radA DNA repair and r 95.5 0.011 2.4E-07 59.1 3.4 29 242-270 98-126 (317)
423 TIGR00041 DTMP_kinase thymidyl 95.5 0.01 2.2E-07 54.5 2.9 25 248-272 5-29 (195)
424 COG3839 MalK ABC-type sugar tr 95.5 0.0086 1.9E-07 60.1 2.5 23 249-271 32-54 (338)
425 cd01672 TMPK Thymidine monopho 95.5 0.011 2.4E-07 53.9 3.1 23 249-271 3-25 (200)
426 TIGR01425 SRP54_euk signal rec 95.5 0.018 3.9E-07 59.7 4.9 26 246-271 100-125 (429)
427 PRK08099 bifunctional DNA-bind 95.5 0.011 2.4E-07 61.0 3.3 28 246-273 219-246 (399)
428 COG1116 TauB ABC-type nitrate/ 95.5 0.0091 2E-07 57.0 2.5 23 249-271 32-54 (248)
429 PRK08356 hypothetical protein; 95.5 0.011 2.4E-07 54.7 3.1 24 248-272 7-30 (195)
430 PRK00023 cmk cytidylate kinase 95.4 0.012 2.7E-07 55.8 3.4 29 247-275 5-33 (225)
431 KOG2170 ATPase of the AAA+ sup 95.4 0.025 5.4E-07 55.4 5.4 53 213-271 83-135 (344)
432 PRK05800 cobU adenosylcobinami 95.4 0.012 2.7E-07 53.4 3.1 24 248-271 3-26 (170)
433 PLN02165 adenylate isopentenyl 95.4 0.014 3E-07 58.5 3.6 27 247-273 44-70 (334)
434 COG1120 FepC ABC-type cobalami 95.4 0.031 6.7E-07 54.1 5.8 25 247-271 29-53 (258)
435 PRK10436 hypothetical protein; 95.4 0.024 5.2E-07 59.5 5.5 49 208-271 194-243 (462)
436 PF01926 MMR_HSR1: 50S ribosom 95.4 0.0097 2.1E-07 49.8 2.1 20 249-268 2-21 (116)
437 PF01745 IPT: Isopentenyl tran 95.3 0.012 2.6E-07 55.1 2.8 28 248-275 3-30 (233)
438 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.3 0.011 2.4E-07 55.4 2.7 27 245-271 29-55 (218)
439 PLN03187 meiotic recombination 95.3 0.013 2.8E-07 59.2 3.2 29 242-270 122-150 (344)
440 PF06414 Zeta_toxin: Zeta toxi 95.3 0.014 3.1E-07 54.1 3.4 27 244-270 13-39 (199)
441 PRK11823 DNA repair protein Ra 95.3 0.014 3.1E-07 61.1 3.7 29 242-270 76-104 (446)
442 PRK12608 transcription termina 95.3 0.013 2.9E-07 59.5 3.3 23 249-271 136-158 (380)
443 TIGR02538 type_IV_pilB type IV 95.3 0.024 5.3E-07 61.2 5.5 48 209-271 293-341 (564)
444 PTZ00202 tuzin; Provisional 95.3 0.033 7.1E-07 57.7 6.1 54 208-271 258-311 (550)
445 TIGR02238 recomb_DMC1 meiotic 95.3 0.013 2.8E-07 58.5 3.1 28 242-269 92-119 (313)
446 TIGR02788 VirB11 P-type DNA tr 95.3 0.019 4.2E-07 57.1 4.4 29 243-271 141-169 (308)
447 TIGR00017 cmk cytidylate kinas 95.3 0.014 3.1E-07 55.1 3.2 27 248-274 4-30 (217)
448 PRK13851 type IV secretion sys 95.3 0.012 2.7E-07 59.4 2.9 27 245-271 161-187 (344)
449 cd01121 Sms Sms (bacterial rad 95.3 0.015 3.2E-07 59.5 3.5 30 242-271 78-107 (372)
450 PRK03846 adenylylsulfate kinas 95.3 0.016 3.5E-07 53.7 3.5 26 245-270 23-48 (198)
451 TIGR00455 apsK adenylylsulfate 95.3 0.017 3.8E-07 52.7 3.7 27 245-271 17-43 (184)
452 cd01128 rho_factor Transcripti 95.3 0.016 3.4E-07 56.0 3.5 26 247-272 17-42 (249)
453 cd02022 DPCK Dephospho-coenzym 95.3 0.014 3E-07 53.3 3.0 25 249-274 2-26 (179)
454 COG4178 ABC-type uncharacteriz 95.2 0.011 2.4E-07 63.3 2.7 29 243-271 416-444 (604)
455 PF00931 NB-ARC: NB-ARC domain 95.2 0.019 4.2E-07 55.8 4.2 44 310-357 130-173 (287)
456 PF01583 APS_kinase: Adenylyls 95.2 0.016 3.5E-07 51.8 3.3 25 247-271 3-27 (156)
457 PRK04132 replication factor C 95.2 0.016 3.4E-07 64.9 3.8 45 205-262 12-56 (846)
458 PRK05439 pantothenate kinase; 95.2 0.023 4.9E-07 56.6 4.6 25 247-271 87-111 (311)
459 PRK05703 flhF flagellar biosyn 95.2 0.026 5.6E-07 58.8 5.1 26 246-271 221-246 (424)
460 TIGR01526 nadR_NMN_Atrans nico 95.2 0.016 3.5E-07 58.2 3.4 28 247-274 163-190 (325)
461 PF10662 PduV-EutP: Ethanolami 95.1 0.016 3.4E-07 51.1 2.8 21 248-268 3-23 (143)
462 TIGR02688 conserved hypothetic 95.1 0.034 7.4E-07 57.3 5.6 24 246-269 209-232 (449)
463 TIGR01420 pilT_fam pilus retra 95.1 0.018 4E-07 58.2 3.7 25 247-271 123-147 (343)
464 cd01673 dNK Deoxyribonucleosid 95.1 0.017 3.7E-07 53.0 3.2 26 249-274 2-27 (193)
465 TIGR00959 ffh signal recogniti 95.1 0.027 5.9E-07 58.5 4.9 26 245-270 98-123 (428)
466 TIGR03410 urea_trans_UrtE urea 95.1 0.015 3.2E-07 55.1 2.6 27 245-271 25-51 (230)
467 cd03247 ABCC_cytochrome_bd The 95.1 0.016 3.5E-07 52.6 2.8 27 244-270 26-52 (178)
468 cd03262 ABC_HisP_GlnQ_permease 95.1 0.014 3.1E-07 54.4 2.6 28 244-271 24-51 (213)
469 cd03292 ABC_FtsE_transporter F 95.1 0.015 3.3E-07 54.2 2.7 27 245-271 26-52 (214)
470 cd03228 ABCC_MRP_Like The MRP 95.1 0.017 3.6E-07 52.2 2.9 28 244-271 26-53 (171)
471 PF00625 Guanylate_kin: Guanyl 95.1 0.021 4.6E-07 52.1 3.6 26 246-271 2-27 (183)
472 smart00072 GuKc Guanylate kina 95.1 0.018 3.8E-07 52.8 3.1 25 246-270 2-26 (184)
473 TIGR02655 circ_KaiC circadian 95.1 0.019 4.2E-07 60.8 3.7 29 242-270 259-287 (484)
474 TIGR03608 L_ocin_972_ABC putat 95.1 0.015 3.3E-07 53.9 2.6 26 246-271 24-49 (206)
475 cd03269 ABC_putative_ATPase Th 95.0 0.016 3.4E-07 54.1 2.7 25 246-270 26-50 (210)
476 PRK14730 coaE dephospho-CoA ki 95.0 0.018 3.9E-07 53.4 3.1 25 248-272 3-27 (195)
477 PF06431 Polyoma_lg_T_C: Polyo 95.0 0.038 8.3E-07 55.5 5.5 30 242-271 151-180 (417)
478 cd03258 ABC_MetN_methionine_tr 95.0 0.016 3.4E-07 55.0 2.7 28 244-271 29-56 (233)
479 TIGR02315 ABC_phnC phosphonate 95.0 0.016 3.5E-07 55.3 2.8 27 245-271 27-53 (243)
480 PRK09302 circadian clock prote 95.0 0.02 4.3E-07 61.1 3.6 27 242-268 27-53 (509)
481 PF04851 ResIII: Type III rest 95.0 0.045 9.8E-07 48.9 5.5 27 245-271 24-50 (184)
482 cd04159 Arl10_like Arl10-like 95.0 0.015 3.3E-07 50.3 2.3 21 249-269 2-22 (159)
483 PF01443 Viral_helicase1: Vira 95.0 0.017 3.6E-07 54.5 2.7 22 249-270 1-22 (234)
484 PLN02796 D-glycerate 3-kinase 95.0 0.055 1.2E-06 54.5 6.5 23 249-271 103-125 (347)
485 PRK14021 bifunctional shikimat 95.0 0.02 4.3E-07 61.5 3.6 30 248-277 8-37 (542)
486 PRK13695 putative NTPase; Prov 95.0 0.02 4.4E-07 51.8 3.1 22 249-270 3-24 (174)
487 PTZ00035 Rad51 protein; Provis 94.9 0.02 4.4E-07 57.8 3.3 29 242-270 114-142 (337)
488 KOG0060 Long-chain acyl-CoA tr 94.9 0.018 3.8E-07 60.9 3.0 29 243-271 458-486 (659)
489 PRK10247 putative ABC transpor 94.9 0.018 4E-07 54.4 2.9 26 245-270 32-57 (225)
490 KOG1514 Origin recognition com 94.9 0.51 1.1E-05 51.3 13.8 108 248-356 424-591 (767)
491 COG4525 TauB ABC-type taurine 94.9 0.019 4E-07 53.1 2.7 29 243-271 28-56 (259)
492 TIGR02673 FtsE cell division A 94.9 0.016 3.5E-07 54.1 2.5 26 245-270 27-52 (214)
493 PRK13541 cytochrome c biogenes 94.9 0.019 4E-07 53.0 2.8 27 245-271 25-51 (195)
494 COG1221 PspF Transcriptional r 94.9 0.028 6E-07 57.7 4.2 50 208-268 74-123 (403)
495 cd03256 ABC_PhnC_transporter A 94.9 0.018 3.9E-07 54.8 2.8 27 245-271 26-52 (241)
496 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.017 3.8E-07 50.7 2.5 27 244-270 24-50 (144)
497 cd01122 GP4d_helicase GP4d_hel 94.9 0.021 4.5E-07 55.4 3.2 29 242-270 26-54 (271)
498 cd03264 ABC_drug_resistance_li 94.9 0.016 3.5E-07 54.0 2.4 24 248-271 27-50 (211)
499 TIGR00960 3a0501s02 Type II (G 94.9 0.018 3.9E-07 53.9 2.7 27 245-271 28-54 (216)
500 cd03260 ABC_PstB_phosphate_tra 94.9 0.022 4.7E-07 53.8 3.2 26 245-270 25-50 (227)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-90 Score=686.12 Aligned_cols=399 Identities=50% Similarity=0.859 Sum_probs=365.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhhhhcCCCCCeEEEEecCCCCCcchHHHHHHHHHhhcCCcccc
Q 013823 13 TLFSAYSTLAGSMMLLRSFANELIPQQLRSYLCTTFYHYLFNPLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTE 92 (436)
Q Consensus 13 ~~~~~~~S~~a~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~~~~~~~ti~i~e~~~~~~n~~y~a~~~YL~~~~~~~~~ 92 (436)
++|+.+||++|++||+|+|+++++|.+++.|+.+++ ++|++++++|.++.|.|++|+.+|++|.|+|.||++++++.++
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~-~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~~ 80 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISAL-RGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIAK 80 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhhh
Confidence 578999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCCceeEeccCCCeeEEeecCeeEEEEEEeecCCCCC----CCcceEEEEEecccchhhHHhhhhHHHHHHH
Q 013823 93 RLKVSKTSRQKNFTVSIEKGEEVTDSFQNVQLQWKFVCKEPQNNH----SGEKRYFELSFHKKHKQTVICYYLPHVVERA 168 (436)
Q Consensus 93 rl~~~~~~~~~~~~l~~~~~e~v~D~F~Gv~~~W~~~~~~~~~~~----~~~~~~~~l~f~~~~~~~vl~~yl~~v~~~~ 168 (436)
|++.+.+.+++++++.++++++|.|+|+||++||.+++..++.+. ..++|+|+|+|+++||+.|+.+|||||+.++
T Consensus 81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~~~ 160 (457)
T KOG0743|consen 81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFVEREREKRYFELTFHKKPRELVTLSYLPYVVSKA 160 (457)
T ss_pred hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcccccccCCcceEEEEEecCccHHHhHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999998877653 2689999999999999999999999999999
Q ss_pred HHHHhcceEEEEeecCCCCCCCCCCCCCCCCccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce
Q 013823 169 KEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG 248 (436)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg 248 (436)
++|..+++.+++|++++...+ ....++.|+++.++||++|++|+|++++|+.|++|+..|++++++|+++|++|+||
T Consensus 161 k~I~~~~r~~kl~t~~~~~~~---~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRG 237 (457)
T KOG0743|consen 161 KEILEENRELKLYTNSGKTVI---YTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRG 237 (457)
T ss_pred HHHHHHHHHHHHhhcCCCccc---ccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhcc
Confidence 999999999999999874332 11146799999999999999999999999999999999999999999999999999
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhhcccCC--------------------------CC------------CCC--CCc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMKDRQND--------------------------GA------------SVG--SNT 288 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~--------------------------~~------------~~~--~~~ 288 (436)
||||||||||||+++.|||++|+.++.+.... +| ... ...
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~ 317 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLS 317 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcc
Confidence 99999999999999999999999332221110 00 001 235
Q ss_pred ceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHH
Q 013823 289 KLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIE 368 (436)
Q Consensus 289 ~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~ 368 (436)
.+++|+|||++||+|++||+++||||||||+++|||||+||||||+||+|++|++++++.|+++||+..+ .|.++++|+
T Consensus 318 ~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h~L~~eie 396 (457)
T KOG0743|consen 318 RVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DHRLFDEIE 396 (457)
T ss_pred eeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-CcchhHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999874 699999999
Q ss_pred hhhhcCCCCHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHhhhhhccc
Q 013823 369 GLIQSTDVTPAEVAEELMKAD-DADVALEGLVNFLKRKRIQADESKNND 416 (436)
Q Consensus 369 ~l~~~~~~tpaei~~~l~~~~-~~~~al~~l~~~l~~~~~~~~~~~~~~ 416 (436)
++..+..+|||||++.+|.++ |++.+++.|+++|++++.+..+...+.
T Consensus 397 ~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~~~~~~ 445 (457)
T KOG0743|consen 397 RLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNKDDKEL 445 (457)
T ss_pred HHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhccchhhh
Confidence 999999999999999999888 899999999999999998766655444
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-37 Score=297.91 Aligned_cols=179 Identities=27% Similarity=0.350 Sum_probs=148.4
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh---------
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM--------- 274 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~--------- 274 (436)
.-.+..+|++|+|.++++++|++.++.++.+|+.|.++|+.+|+|+|||||||||||+||+|+|+..++.+
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 34455799999999999999999999999999999999999999999999999999999999999988111
Q ss_pred ----------------hc-------------------ccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCc
Q 013823 275 ----------------KD-------------------RQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 319 (436)
Q Consensus 275 ----------------~~-------------------r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~ 319 (436)
.. |.....+.+.+.++++-+||++|||+.+. +++-||++||++
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~ 300 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRP 300 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCc
Confidence 11 11111233345678999999999999875 569999999999
Q ss_pred CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
+.|||||+||||||++|+||+|+.++|..|++.+-+.- ......+++.|+... ++|+|||..+|.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM--~l~~dvd~e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM--NLADDVDLELLARLTEGFSGADLKAICT 366 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc--cCccCcCHHHHHHhcCCCchHHHHHHHH
Confidence 99999999999999999999999999999999987654 222233445555543 599999999985
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=289.96 Aligned_cols=177 Identities=30% Similarity=0.386 Sum_probs=150.7
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc---------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------- 276 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------- 276 (436)
-+..+|+||+|++++|.+|.+.+..++.+++.|.++|+.+|+|||||||||||||++|+|+|++.+..+..
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 34479999999999999999999999999999999999999999999999999999999999999822211
Q ss_pred ----------------ccCCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 277 ----------------RQNDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 277 ----------------r~~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
|...++ ..++...+.+++||++|||+... .+++||++||+|+.||+
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ 585 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMIDP 585 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc--CcEEEEeccCChhhcCH
Confidence 111111 12245678999999999999765 45999999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCC-CCHHHHHHHHh
Q 013823 325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTD-VTPAEVAEELM 386 (436)
Q Consensus 325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~-~tpaei~~~l~ 386 (436)
|++||||||..|++|+||.++|..|++.++... .-....++.+|++.++ ||+|||.+.|.
T Consensus 586 ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 586 ALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM--PFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred HHcCCcccceeEeecCccHHHHHHHHHHHHhcC--CCCccccHHHHHHHhccCChHHHHHHHH
Confidence 999999999999999999999999999999876 3333367788888664 99999999986
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-31 Score=269.68 Aligned_cols=177 Identities=24% Similarity=0.329 Sum_probs=148.9
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh------------
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK------------ 275 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~------------ 275 (436)
..+|+||+++++++.++...+..++++++.|+++|+..|.|+|||||||||||.||+|+|++.|+.+.
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYV 586 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYV 586 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999993221
Q ss_pred -------------cccCCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccc
Q 013823 276 -------------DRQNDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL 326 (436)
Q Consensus 276 -------------~r~~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~Al 326 (436)
.|...+| .....+.+.+++||.+|||+....+ |.||++||+|+.+|||+
T Consensus 587 GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g--V~viaATNRPDiIDpAi 664 (802)
T KOG0733|consen 587 GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG--VYVIAATNRPDIIDPAI 664 (802)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc--eEEEeecCCCcccchhh
Confidence 1222222 1234566789999999999977644 99999999999999999
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHHHhcccC---CCCCcHHHHHhhhhcCCCCHHHHHHHHh
Q 013823 327 LRPGRMDVHINMSYCTVHGFKVLASNYLGIKG---KSHSLFGEIEGLIQSTDVTPAEVAEELM 386 (436)
Q Consensus 327 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~---~~~~~~~~i~~l~~~~~~tpaei~~~l~ 386 (436)
+||||||..+++++|+.++|..|++....... +.+..+++|+....-.+||+||++..+.
T Consensus 665 LRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 665 LRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred cCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 99999999999999999999999999987432 2344556666655556799999998875
No 5
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.6e-31 Score=279.92 Aligned_cols=214 Identities=27% Similarity=0.353 Sum_probs=170.7
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc--------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ-------- 278 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~-------- 278 (436)
.+.+|+||+|.++.|++|.|.+. ||++|+.|.++|...|||+||+||||||||+||+|+|+|.|++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 34799999999999999999665 999999999999999999999999999999999999999994432211
Q ss_pred -----------------CCCC--------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 279 -----------------NDGA--------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 279 -----------------~~~~--------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
..++ ..+.+...++++||.+|||+.+. .++||+++||+++.
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNRPDI 462 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCCccc
Confidence 1111 11234557899999999999876 56999999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh--------------
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM-------------- 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~-------------- 386 (436)
||+||+||||||++|.++.|+...|..|++.++...... ....++.+++.. .++|+|||+..|.
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999865422 334455556554 4699999999874
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 013823 387 KADDADVALEGLVNFLKRKRIQADESKNNDVKGEEANE 424 (436)
Q Consensus 387 ~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 424 (436)
...+.+.|++.++.-++.+......+++.....|+++.
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagh 579 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGH 579 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccc
Confidence 12356677777777776666666666666666777654
No 6
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-31 Score=268.12 Aligned_cols=173 Identities=28% Similarity=0.368 Sum_probs=145.1
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC-------
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND------- 280 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~------- 280 (436)
..+|+||-|-++.|+++.+ +..|++.|..|.++|-..|+|+||.||||||||+||+|+|++.+++++....+
T Consensus 300 nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 3579999999999999977 55699999999999999999999999999999999999999999666543322
Q ss_pred ------------------CC----------C------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccc
Q 013823 281 ------------------GA----------S------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL 326 (436)
Q Consensus 281 ------------------~~----------~------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~Al 326 (436)
+| + .....+.++++||.+|||+..+ +++|||++||.|+.||+||
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~LD~AL 456 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEALDKAL 456 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhhhhHHh
Confidence 11 0 0114567999999999999876 4599999999999999999
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHH
Q 013823 327 LRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEEL 385 (436)
Q Consensus 327 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l 385 (436)
.||||||++|.+|.||...|.+|++.|+... .+....+..-++..+ +|++||+++.+
T Consensus 457 ~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 457 TRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred cCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccCCCCCchHHHHHHH
Confidence 9999999999999999999999999999765 333334445566654 69999998866
No 7
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.4e-30 Score=238.58 Aligned_cols=177 Identities=26% Similarity=0.401 Sum_probs=143.0
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh----------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------- 275 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------- 275 (436)
.+..++.||+|.+-+|++|.+.++.++.+.+.|+..|+.+|||+|||||||||||+|++|+|+.....+.
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 4456999999999999999999999999999999999999999999999999999999999997762111
Q ss_pred ---------------cccCCC-------------------CCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 276 ---------------DRQNDG-------------------ASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 276 ---------------~r~~~~-------------------~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
.+.+.+ .+.+.+.++.+-.|||.|||+... .++-||++||+.+.
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnradt 306 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRADT 306 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcccc
Confidence 111111 122344567788899999999875 45999999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~ 386 (436)
|||||+||||+|++|+||+|+..+++-++...-..- ......+++.++.. ..++.|+|...|.
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm--~ls~~vdle~~v~rpdkis~adi~aicq 370 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM--NLSDEVDLEDLVARPDKISGADINAICQ 370 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc--cCCcccCHHHHhcCccccchhhHHHHHH
Confidence 999999999999999999999999888777665443 22333455665544 4599999999886
No 8
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6e-30 Score=241.79 Aligned_cols=180 Identities=26% Similarity=0.352 Sum_probs=142.8
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh--------
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK-------- 275 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~-------- 275 (436)
...+..+|.|++|.+.+.++|.+.++.++.+|++|...|+.+|+|++|||+||||||.||+|+||...+.+.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 344557999999999999999999999999999999999999999999999999999999999987651111
Q ss_pred ------------------------------------cccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCc
Q 013823 276 ------------------------------------DRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 319 (436)
Q Consensus 276 ------------------------------------~r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~ 319 (436)
.|...+++...+.++++-.|||.+||+.+. ..+-||++||++
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnri 334 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRI 334 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEecccc
Confidence 011111122234556777899999999875 458999999999
Q ss_pred CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhh-cCCCCHHHHHHHHhc
Q 013823 320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQ-STDVTPAEVAEELMK 387 (436)
Q Consensus 320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~-~~~~tpaei~~~l~~ 387 (436)
+.|||||+||||+|++|+||.||...++.|+..+-..- .-.-...++.++. ..++++|||...|..
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M--tl~~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM--TLAEDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhhceeEEEeeccc--chhccccHHHHhhcccccccccHHHHHHH
Confidence 99999999999999999999999999998887654332 1111233455554 456999999998863
No 9
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.95 E-value=2e-28 Score=201.94 Aligned_cols=97 Identities=46% Similarity=0.838 Sum_probs=93.5
Q ss_pred hchHHHHHHHHHHHHhhhhc-CCCCCeEEEEecCCCCCcchHHHHHHHHHhhcCCccccceeeeccCCCCceeEeccCCC
Q 013823 35 LIPQQLRSYLCTTFYHYLFN-PLSNNLTLVFDEWSGMSRNQVFDAAELYLRTKINPDTERLKVSKTSRQKNFTVSIEKGE 113 (436)
Q Consensus 35 ~~P~~l~~~~~~~~~~~~~~-~~~~~~ti~i~e~~~~~~n~~y~a~~~YL~~~~~~~~~rl~~~~~~~~~~~~l~~~~~e 113 (436)
+||++||+++.+++ ++++. +++||+||+|+|++|+.+|++|+||++||+++++++++||++++++++++++++|++||
T Consensus 1 ~~P~~lr~~~~~~~-~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHELRSYLRSLL-RRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHHHHHHHHHHH-HHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCC
Confidence 68999999999999 88776 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCeeEEEEEEeec
Q 013823 114 EVTDSFQNVQLQWKFVCKE 132 (436)
Q Consensus 114 ~v~D~F~Gv~~~W~~~~~~ 132 (436)
+|+|+|+||++||.+++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999998864
No 10
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-28 Score=228.22 Aligned_cols=178 Identities=24% Similarity=0.295 Sum_probs=144.2
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------- 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------- 276 (436)
-.+..++.||+|.+.+.+++.+.+..++.+++.|..+|+.+|+|+|+|||||||||.+|+|.|...+..+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 344568999999999999999999999999999999999999999999999999999999999877711110
Q ss_pred ------------------------------------ccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823 277 ------------------------------------RQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320 (436)
Q Consensus 277 ------------------------------------r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~ 320 (436)
|..+....+.+.++++-.|||.+||+.++ +++-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 11111122334567888899999999875 6689999999999
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
.|||||+|.||+|++|+||.|+.++|..|+..+-..- ........++|+..+ +|.+|+....|.
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM--nv~~DvNfeELaRsTddFNGAQcKAVcV 386 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM--NVSDDVNFEELARSTDDFNGAQCKAVCV 386 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc--CCCCCCCHHHHhhcccccCchhheeeeh
Confidence 9999999999999999999999999999998876654 333334455666654 489998877664
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-28 Score=249.23 Aligned_cols=175 Identities=22% Similarity=0.252 Sum_probs=144.0
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC--------
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND-------- 280 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~-------- 280 (436)
.+|.+|+|.+....++.+.+.. +.+|+.|..+|+.+|||+|||||||||||+||+|||+++++++......
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 5799999999999999997775 9999999999999999999999999999999999999999665443221
Q ss_pred -----------------CC----------------CCCCCcceeecceeecccCcccC--CCCeEEEEEecCCcCCCCcc
Q 013823 281 -----------------GA----------------SVGSNTKLTLSGILNFIDGLWSS--CGDERIIVFTTNHKERIDPA 325 (436)
Q Consensus 281 -----------------~~----------------~~~~~~~~~~s~LL~~ldg~~~~--~~~~~ivI~TTN~~~~lD~A 325 (436)
+| ...+..++++++||+.||++... .|+.|+||+|||+|+.||||
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa 345 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA 345 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHH
Confidence 11 01134567899999999999654 35779999999999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
|+|+||||+.|.++.|+..+|..|++.....- .+...-++.+|+..+ +|-+||+...|.
T Consensus 346 LRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l--rl~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 346 LRRAGRFDREICLGVPSETAREEILRIICRGL--RLSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred HhccccccceeeecCCchHHHHHHHHHHHhhC--CCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 99999999999999999999999999987643 233334445555543 588999988775
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.5e-28 Score=252.28 Aligned_cols=179 Identities=27% Similarity=0.343 Sum_probs=141.8
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh-----------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------- 274 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------- 274 (436)
-|..+|+||+|.+++|++|.+.|..++++++.|.. |..++.|+|||||||||||.+|+|+|.++.+.+
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 34468999999999999999999999999999865 777788999999999999999999999998221
Q ss_pred --------------hcccCCCC------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823 275 --------------KDRQNDGA------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI 322 (436)
Q Consensus 275 --------------~~r~~~~~------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l 322 (436)
..|+..+| +.++...+++|+||.+|||+..+....++||++||+||.|
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL 824 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL 824 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc
Confidence 12222222 2345567889999999999986667789999999999999
Q ss_pred CccccCCCceeEEEEcCCCCHHH-HHHHHHHHhcccC-CCCCcHHHHHhhhhcCCCCHHHHHHHHh
Q 013823 323 DPALLRPGRMDVHINMSYCTVHG-FKVLASNYLGIKG-KSHSLFGEIEGLIQSTDVTPAEVAEELM 386 (436)
Q Consensus 323 D~AllRpGR~d~~I~~~~p~~~~-r~~i~~~~l~~~~-~~~~~~~~i~~l~~~~~~tpaei~~~l~ 386 (436)
||||+||||||+-++++.+...+ +..+++..-+... +...+..+|++.++ .++|+||+-..|-
T Consensus 825 DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp-~~~TGADlYsLCS 889 (953)
T KOG0736|consen 825 DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP-PNMTGADLYSLCS 889 (953)
T ss_pred ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC-cCCchhHHHHHHH
Confidence 99999999999999999887654 6666666544332 24445555655553 3599999988774
No 13
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=244.07 Aligned_cols=177 Identities=26% Similarity=0.386 Sum_probs=141.5
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------- 277 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------- 277 (436)
.+..+|++|+|.+.+|++|.+.+..++.+++.|.++|+++|+|+|||||||||||++|+++|++++..+...
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999988322110
Q ss_pred -----------------cCCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 278 -----------------QNDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 278 -----------------~~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
...++ ..+......+..||+.+|++... .+++||+|||+++.
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRADT 296 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCchh
Confidence 00000 00111234567788899998654 35899999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
||||++||||||.+|+|++|+.++|..||+.++...+ .....++..++..+ ++|+|||...|.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~--l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN--LSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC--CCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999987542 12223455555543 699999998875
No 14
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.2e-28 Score=234.71 Aligned_cols=174 Identities=23% Similarity=0.314 Sum_probs=141.8
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc----------
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR---------- 277 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r---------- 277 (436)
...|+||+|+.+.|+.|.+.+..++..|++|+.+-.|| +|+|++||||||||+||+|+|.+++..++..
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence 36899999999999999999999999999999887777 7999999999999999999999999222221
Q ss_pred --------------------------------cCCCCCCCCCcceeecceeecccCcccCCCC--eEEEEEecCCcCCCC
Q 013823 278 --------------------------------QNDGASVGSNTKLTLSGILNFIDGLWSSCGD--ERIIVFTTNHKERID 323 (436)
Q Consensus 278 --------------------------------~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~--~~ivI~TTN~~~~lD 323 (436)
+......++.+++..+.||..|||+...... -|+|+++||.||+||
T Consensus 287 GeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiD 366 (491)
T KOG0738|consen 287 GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDID 366 (491)
T ss_pred cchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchH
Confidence 1122234456788999999999999754222 267788999999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
+||+| ||...|++|+|+.++|..|++..|+... ....-.++.+++.. +||++||..+|.
T Consensus 367 EAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~--~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 367 EALRR--RLEKRIYIPLPDAEARSALIKILLRSVE--LDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred HHHHH--HHhhheeeeCCCHHHHHHHHHHhhcccc--CCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 99999 9999999999999999999999997653 22223344555544 599999999885
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-28 Score=226.58 Aligned_cols=178 Identities=25% Similarity=0.327 Sum_probs=141.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE----------- 273 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----------- 273 (436)
.-+..+++-++|.+.+.++|.+.++.+.++|+.|..+|++.|+|+|||||||||||.||+|+|.+....
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 344568999999999999999999999999999999999999999999999999999999999887611
Q ss_pred --------------hhcc-------------------cCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823 274 --------------MKDR-------------------QNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320 (436)
Q Consensus 274 --------------~~~r-------------------~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~ 320 (436)
...| ...+.+.+++.++++-.|||.+||+... .++-||++||+.+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnrid 297 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRID 297 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccc
Confidence 1111 1111122345567888899999999875 5588999999999
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
.|||||+||||+|++|+||.|+.++|..|++.+-..- .-..--++..+++.- +.++|++...|.
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCHHHHHHhCCCCccchhhhhhh
Confidence 9999999999999999999999999999998876543 111122334444433 478888888775
No 16
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.8e-28 Score=225.99 Aligned_cols=183 Identities=25% Similarity=0.326 Sum_probs=148.9
Q ss_pred cccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh------
Q 013823 201 GSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM------ 274 (436)
Q Consensus 201 ~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~------ 274 (436)
..+.-.+..++.||+|-.++.+.|.+.++.++.+|+.|-.+|+.+|+|+|||||||||||.+|+|+|+..+.-+
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 34445566799999999999999999999999999999999999999999999999999999999999887111
Q ss_pred -----------------h--cc-------------------cCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEec
Q 013823 275 -----------------K--DR-------------------QNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT 316 (436)
Q Consensus 275 -----------------~--~r-------------------~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TT 316 (436)
+ .| ...+.+.+++.++++-.|++.+||+... .++-|+++|
T Consensus 246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmat 323 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMAT 323 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeec
Confidence 0 01 1111123345667888899999999876 448899999
Q ss_pred CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc-CCCCCcHHHHHhhhhcCCCCHHHHHHHHhc
Q 013823 317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK-GKSHSLFGEIEGLIQSTDVTPAEVAEELMK 387 (436)
Q Consensus 317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~-~~~~~~~~~i~~l~~~~~~tpaei~~~l~~ 387 (436)
|+|+.|||||+||||+|++++|.+|+.+.|..|++.+-..- ......++-++.|+.. -|+|+|...|..
T Consensus 324 nrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpn--stgaeirsvcte 393 (435)
T KOG0729|consen 324 NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPN--STGAEIRSVCTE 393 (435)
T ss_pred CCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCC--CcchHHHHHHHH
Confidence 99999999999999999999999999999998887665432 1244557777888764 599999998863
No 17
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-27 Score=249.47 Aligned_cols=212 Identities=26% Similarity=0.335 Sum_probs=170.2
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND------ 280 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~------ 280 (436)
...+|.|++|.++.|+++.+.+ .|+++|..|.++|...|+|+||+||||||||+||+|+|++.+++++..+.+
T Consensus 145 ~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 3478999999999999998855 599999999999999999999999999999999999999999554322211
Q ss_pred -------------------CC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823 281 -------------------GA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI 322 (436)
Q Consensus 281 -------------------~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l 322 (436)
+| ..+.+...++++||.+|||+..+ +.++|+++||+|+-|
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~--~gviviaaTNRpdVl 301 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN--EGVIVIAATNRPDVL 301 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC--CceEEEecCCCcccc
Confidence 11 11123346999999999999854 559999999999999
Q ss_pred CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh--------------c
Q 013823 323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM--------------K 387 (436)
Q Consensus 323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~--------------~ 387 (436)
||||+||||||++|.++.||...|++|++-+..... .....++..++..+ +++.|++++.+- .
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~--l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~ 379 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP--LAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEIT 379 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC--CCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEe
Confidence 999999999999999999999999999997776542 11222333344443 589999988772 2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 013823 388 ADDADVALEGLVNFLKRKRIQADESKNNDVKGEEAN 423 (436)
Q Consensus 388 ~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 423 (436)
..+.+.|.+.++...+.+.....+.+++....||++
T Consensus 380 ~~~i~ea~drv~~G~erks~vise~ek~~~AYhEag 415 (596)
T COG0465 380 MRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAG 415 (596)
T ss_pred ccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHH
Confidence 357889999999988888877788888888888775
No 18
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=1.5e-26 Score=240.66 Aligned_cols=149 Identities=28% Similarity=0.414 Sum_probs=124.4
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh----------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------- 275 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------- 275 (436)
.++.+|++|+|.++++++|.+.+..++.+++.|...|+++++|+|||||||||||++|+++|++++..+.
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 3457999999999999999999999999999999999999999999999999999999999999752200
Q ss_pred cc-------------------------c----CCCC--------------C---CCCCcceeecceeecccCcccCCCCe
Q 013823 276 DR-------------------------Q----NDGA--------------S---VGSNTKLTLSGILNFIDGLWSSCGDE 309 (436)
Q Consensus 276 ~r-------------------------~----~~~~--------------~---~~~~~~~~~s~LL~~ldg~~~~~~~~ 309 (436)
.. . ..++ . .....+..++.||++||++... ++
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~~ 333 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--DN 333 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--Cc
Confidence 00 0 0000 0 0011234567899999999764 45
Q ss_pred EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
++||+|||+++.||||++||||||.+|+|++|+.++|+.|+++|+..
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999864
No 19
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.93 E-value=8e-26 Score=232.27 Aligned_cols=179 Identities=25% Similarity=0.332 Sum_probs=140.9
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc-----
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ----- 278 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~----- 278 (436)
...++.+|++|+|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++..+....
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 345567999999999999999999999999999999999999999999999999999999999998873221110
Q ss_pred --------------------CCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCc
Q 013823 279 --------------------NDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 319 (436)
Q Consensus 279 --------------------~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~ 319 (436)
..++ ........++..||+.+|++... .++.||+|||++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~ 332 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRI 332 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCCh
Confidence 0000 00011133456788888888654 358999999999
Q ss_pred CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823 320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 386 (436)
Q Consensus 320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~ 386 (436)
+.||+|++||||||.+|+|+.|+.++|..|++.++.... .....++..++.. .++|+|+|..+|.
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~--l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT--LAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC--CCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999986542 1222345555544 3699999998775
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.93 E-value=1.1e-25 Score=230.14 Aligned_cols=177 Identities=24% Similarity=0.314 Sum_probs=138.9
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------- 277 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------- 277 (436)
.+..+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++..+...
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 345689999999999999999999999999999999999999999999999999999999999988322111
Q ss_pred -----------------cCCCC--------------CC-----CCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 278 -----------------QNDGA--------------SV-----GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 278 -----------------~~~~~--------------~~-----~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
...++ .. +.....++..|++.+|++... .+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCChhh
Confidence 00000 00 011123456678888887543 45899999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
+|+|++||||||..|+||.|+.++|..|++.++...... ...++..++..+ ++++++|..+|.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~--~~~~~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA--DDVDLEELAELTEGASGADLKAICT 346 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC--CcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999998654211 112345555543 699999998875
No 21
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1.3e-25 Score=246.74 Aligned_cols=175 Identities=25% Similarity=0.307 Sum_probs=142.2
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc---------
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ--------- 278 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~--------- 278 (436)
..+|++|+|.+++|+.|.+.+..++..++.|.++|+.+++|+|||||||||||++|+++|++++..+....
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV 528 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence 45899999999999999999999999999999999999999999999999999999999999983322111
Q ss_pred ----------------CCCC-----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823 279 ----------------NDGA-----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA 325 (436)
Q Consensus 279 ----------------~~~~-----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A 325 (436)
..++ .......+.++.||.+|||+... .+++||+|||+|+.||||
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL--SNVVVIAATNRPDILDPA 606 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC--CCEEEEEeCCChhhCCHh
Confidence 0000 00112345678899999998654 459999999999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
++||||||.+|++|+|+.++|..||+.++... ......++..++..+ ++|+|||...|.
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~--~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSM--PLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCC--CCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999887654 222233456666654 599999988774
No 22
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.93 E-value=8.2e-26 Score=238.10 Aligned_cols=176 Identities=27% Similarity=0.390 Sum_probs=140.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc-------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ------- 278 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~------- 278 (436)
.+..+|++|+|.+++|+++.+.+. ++..++.|...|...++|+|||||||||||++|+++|++++.++....
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 445799999999999999987555 689999999999999999999999999999999999999983332111
Q ss_pred ------------------CCCC--------------C-----CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 279 ------------------NDGA--------------S-----VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 279 ------------------~~~~--------------~-----~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
..++ . .......+++.||+.||++... ++++||+|||+|+.
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRPDV 205 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCChhh
Confidence 0001 0 0112235677899999998654 45999999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
||||++||||||.+|+++.|+.++|..|++.++.... .....++..++... ++|++||...+.
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~--~~~~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK--LAPDVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC--CCcchhHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999987642 22334556666654 599999988764
No 23
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-25 Score=231.05 Aligned_cols=199 Identities=24% Similarity=0.304 Sum_probs=158.1
Q ss_pred CccccccCCC--CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch---
Q 013823 199 MWGSINLEHP--STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE--- 273 (436)
Q Consensus 199 ~w~~~~~~~~--~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~--- 273 (436)
..+.+.+..+ ..|++|+|..++|+.+.+.+..+.+.+..|...+++.+.|+|||||||||||.||.|+|...+..
T Consensus 652 aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis 731 (952)
T KOG0735|consen 652 ALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS 731 (952)
T ss_pred HhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE
Confidence 3444554444 47999999999999999999999999999999999999999999999999999999999988811
Q ss_pred --------------------hhcc--cCCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEe
Q 013823 274 --------------------MKDR--QNDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT 315 (436)
Q Consensus 274 --------------------~~~r--~~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~T 315 (436)
++.| ...+| ...+...+.+++||.+|||...- +++.|+++
T Consensus 732 vKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl--~GV~i~aa 809 (952)
T KOG0735|consen 732 VKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL--DGVYILAA 809 (952)
T ss_pred ecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc--ceEEEEEe
Confidence 1211 11111 22245667899999999999765 45999999
Q ss_pred cCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHhccCCHHHH
Q 013823 316 TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMKADDADVA 394 (436)
Q Consensus 316 TN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~~~~~~~~a 394 (436)
|.+|+.|||||+||||+|+.++.|.|+..+|..|+...-... ......+++.++..+ +||+||++..|. .+-
T Consensus 810 TsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~--~~~~~vdl~~~a~~T~g~tgADlq~ll~-----~A~ 882 (952)
T KOG0735|consen 810 TSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL--LKDTDVDLECLAQKTDGFTGADLQSLLY-----NAQ 882 (952)
T ss_pred cCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc--CCccccchHHHhhhcCCCchhhHHHHHH-----HHH
Confidence 999999999999999999999999999999999999876644 334455666666654 599999998886 233
Q ss_pred HHHHHHHHHHHH
Q 013823 395 LEGLVNFLKRKR 406 (436)
Q Consensus 395 l~~l~~~l~~~~ 406 (436)
+..+.++|.+..
T Consensus 883 l~avh~~l~~~~ 894 (952)
T KOG0735|consen 883 LAAVHEILKRED 894 (952)
T ss_pred HHHHHHHHHhcC
Confidence 556666665544
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.92 E-value=1.9e-25 Score=232.60 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=131.1
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND------ 280 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~------ 280 (436)
+..+|++|+|.+.+|+.+.+....|. ......|++.|+|+|||||||||||++|+++|++++.++...+..
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 34679999999999999987665443 334677999999999999999999999999999998443322110
Q ss_pred -------------------CC-----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 281 -------------------GA-----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 281 -------------------~~-----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
++ ...+...+.++.|++.|+.. ...++||+|||+++.|||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhCCH
Confidence 00 01112334455566666643 345899999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
|++||||||.+|+++.|+.++|..||+.++...........++..|+..+ +||+|||.+.+.
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999987532222234567777655 699999988774
No 25
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.1e-25 Score=215.96 Aligned_cols=188 Identities=21% Similarity=0.262 Sum_probs=150.8
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC-------
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND------- 280 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~------- 280 (436)
.+|+||+|.+.+|+.+.+.+..++..++.|...+ ..+++|+|||||||||||++|+|+|++.|..+.....+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 5899999999999999999999999999998544 46679999999999999999999999999322221111
Q ss_pred ----------------------------------CCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccc
Q 013823 281 ----------------------------------GASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL 326 (436)
Q Consensus 281 ----------------------------------~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~Al 326 (436)
...+++....+.++|....||+.+..+..++|+++||+|.+||.|+
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAi 248 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAI 248 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHH
Confidence 1122233445566788889999988777899999999999999999
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 013823 327 LRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMKADDADVALEGLVNFLKRK 405 (436)
Q Consensus 327 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~~~~~~~~al~~l~~~l~~~ 405 (436)
+| ||...++++.|+.++|.+|++-+|.... ....-++.+++..+ +||+.||.+.|. .+|+..+.++++..
T Consensus 249 iR--R~p~rf~V~lP~~~qR~kILkviLk~e~--~e~~vD~~~iA~~t~GySGSDLkelC~-----~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 249 IR--RLPRRFHVGLPDAEQRRKILKVILKKEK--LEDDVDLDEIAQMTEGYSGSDLKELCR-----LAALRPIRELLVSE 319 (386)
T ss_pred HH--hCcceeeeCCCchhhHHHHHHHHhcccc--cCcccCHHHHHHhcCCCcHHHHHHHHH-----HHhHhHHHHHHHhc
Confidence 99 9999999999999999999999998763 33334555556554 599999999997 44566666666664
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.8e-24 Score=225.58 Aligned_cols=179 Identities=25% Similarity=0.354 Sum_probs=144.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------- 277 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------- 277 (436)
.+..+|++++|+++.|+.+.+.+..++..++.|...|+.+++|+|||||||||||++|+|+|++++..+...
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 344699999999999999999999999999999999999999999999999999999999999888322211
Q ss_pred -----------------cCCCC--------------C--CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 278 -----------------QNDGA--------------S--VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 278 -----------------~~~~~--------------~--~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
...++ . .+....+.+++||.++||+... .+++||+|||+|+.+|+
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~ 393 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDP 393 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCH
Confidence 11111 0 0111247889999999999765 45999999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823 325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 386 (436)
Q Consensus 325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~ 386 (436)
|++||||||..|++|.|+.++|..+++.++...........++..++.. .+++++||...|.
T Consensus 394 a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ 456 (494)
T COG0464 394 ALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR 456 (494)
T ss_pred hhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 9999999999999999999999999999998542111122344555553 3499999998885
No 27
>CHL00176 ftsH cell division protein; Validated
Probab=99.91 E-value=2.1e-24 Score=231.38 Aligned_cols=176 Identities=30% Similarity=0.349 Sum_probs=140.3
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc-------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ------- 278 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~------- 278 (436)
....+|++|+|.++.|+++.+. ..+++.++.|..+|...++|+|||||||||||++|+++|++++.++....
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~ei-v~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEV-VSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHH-HHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 4457999999999999999775 55789999999999999999999999999999999999999883332111
Q ss_pred ------------------CCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 279 ------------------NDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 279 ------------------~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
..++ ..+.....+++.||..+|++... .+++||+|||+++.
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN~~~~ 333 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATNRVDI 333 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC--CCeeEEEecCchHh
Confidence 0000 00112234677889999998654 45999999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
+|+|++||||||.+|+++.|+.++|..|++.++... ......++..++... +++++||...+.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999764 233344566677655 499999988774
No 28
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.91 E-value=1.7e-24 Score=202.20 Aligned_cols=171 Identities=20% Similarity=0.291 Sum_probs=136.7
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc---------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR--------- 277 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r--------- 277 (436)
+..+||||+|+++.|+... .+..++.+|+.|.++ .|+.+|+|||||||||++|+|+|++.++++...
T Consensus 116 ~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 3468999999999999874 466789999877654 689999999999999999999999999433211
Q ss_pred ----------------cCCCC-----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 278 ----------------QNDGA-----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 278 ----------------~~~~~-----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
...+| ...++....++.||..|||+.++ ++++.|++||+|+.|||
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~en--eGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKEN--EGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC--CceEEEeecCChhhcCH
Confidence 11122 11234456788999999999865 56999999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHhc
Q 013823 325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMK 387 (436)
Q Consensus 325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~~ 387 (436)
|++. ||...|+|.+|+.++|..|++.|.... ..+....+..++..+ ++|+.||.+-+++
T Consensus 270 aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 270 AIRS--RFEEEIEFKLPNDEERLEILEYYAKKF--PLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred HHHh--hhhheeeeeCCChHHHHHHHHHHHHhC--CCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 9999 999999999999999999999998876 444444566666654 5999999987763
No 29
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.90 E-value=1.5e-23 Score=212.88 Aligned_cols=178 Identities=24% Similarity=0.318 Sum_probs=136.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR------- 277 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r------- 277 (436)
..+..+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++..+...
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999999888222110
Q ss_pred ------------------cCCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823 278 ------------------QNDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320 (436)
Q Consensus 278 ------------------~~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~ 320 (436)
...++ ..+......+..+++.+|++... +++.||+|||+++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChh
Confidence 00000 00011123456677777776443 3589999999999
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
.+|++++||||||..|+|+.|+.++|..|++.++....... ..++..++..+ ++++++|...+.
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~--~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE--DVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc--cCCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999876542111 12344444433 599999988764
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.3e-24 Score=206.22 Aligned_cols=174 Identities=24% Similarity=0.329 Sum_probs=139.7
Q ss_pred cccCCC-CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc----
Q 013823 203 INLEHP-STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR---- 277 (436)
Q Consensus 203 ~~~~~~-~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r---- 277 (436)
+..+.| ..|+||+|++..|+.+.+.+..+++.|..|..-..|| ||+|||||||||||.||+|+|.+.+..++..
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 344444 5899999999999999999999999999998654555 8999999999999999999999998222111
Q ss_pred ---------------------cCCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823 278 ---------------------QNDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320 (436)
Q Consensus 278 ---------------------~~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~ 320 (436)
...++ +....++++...||-.|.|+..+ .++++|+++||-||
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPW 280 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC-CCceEEEecCCCch
Confidence 11111 11234566777899999998643 56799999999999
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCc-HHHHHhhhhcC-CCCHHHHH
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSL-FGEIEGLIQST-DVTPAEVA 382 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~-~~~i~~l~~~~-~~tpaei~ 382 (436)
.||.|++| ||+..|++|+|...+|..+++.+++.. .|.+ ..++..|...+ +++++||.
T Consensus 281 ~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGySGsDis 340 (439)
T KOG0739|consen 281 VLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYSGSDIS 340 (439)
T ss_pred hHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCCcCceE
Confidence 99999999 999999999999999999999999987 4544 56778887765 48888874
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.4e-24 Score=203.23 Aligned_cols=175 Identities=25% Similarity=0.313 Sum_probs=137.5
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-----------
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR----------- 277 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r----------- 277 (436)
.+|+.+.|+-++..++++.++.++.+++.+.++|+.+|.|+|||||||||||.+|+++|..+++.+...
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 379999999999999999999999999999999999999999999999999999999999999332111
Q ss_pred --------------cCCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 278 --------------QNDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 278 --------------~~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
...+| ..+..-++++..|++.|||+... ..+-+|+|||+|+.|||
T Consensus 209 EsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL--HRVKTIMATNRPDTLDP 286 (388)
T ss_pred cHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc--ccccEEEecCCccccch
Confidence 00011 11223456788899999999765 45889999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccC-CCCCcHHHHHhhhhcCCCCHHHHHHHHhc
Q 013823 325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG-KSHSLFGEIEGLIQSTDVTPAEVAEELMK 387 (436)
Q Consensus 325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~-~~~~~~~~i~~l~~~~~~tpaei~~~l~~ 387 (436)
||+||||+|+.+++|.|+...|..|.+.+-..-. -....++.+.++.+ ++.++++...|..
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~rn~~tE 348 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADLRNVCTE 348 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHHhhhccc
Confidence 9999999999999999999998886654422110 02233555655554 4788888887753
No 32
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.87 E-value=1.3e-22 Score=219.41 Aligned_cols=175 Identities=25% Similarity=0.350 Sum_probs=137.4
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------- 279 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------- 279 (436)
...+|+++.|.+..++.+.+.+. ++..+..|...|...++|+||+||||||||++++++|++++.++...+.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 34679999999999999977554 6777888888998999999999999999999999999998843221110
Q ss_pred ------------------CCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823 280 ------------------DGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI 322 (436)
Q Consensus 280 ------------------~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l 322 (436)
.++ ........+++.||..||++... +.++||+|||+|+.|
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p~~l 303 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDVL 303 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCChhhc
Confidence 000 00112234778899999999764 459999999999999
Q ss_pred CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
|+|++||||||++|++++|+.++|.+|++.++.... .....++..++..+ ++|+|||.+.+.
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~--l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC--CCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999997652 22223445566544 699999998874
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.6e-22 Score=217.48 Aligned_cols=179 Identities=22% Similarity=0.254 Sum_probs=144.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc-----chhhcccC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-----VEMKDRQN 279 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~r~~ 279 (436)
...-..|++|+|.+..++++++.+..++.+++.|..+++.+|||+|||||||||||++|+|+|..+. +.++.|..
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 3445689999999999999999999999999999999999999999999999999999999999886 33333333
Q ss_pred CCC------------------------------CC-----------CCCcceeecceeecccCcccCCCCeEEEEEecCC
Q 013823 280 DGA------------------------------SV-----------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 318 (436)
Q Consensus 280 ~~~------------------------------~~-----------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~ 318 (436)
.++ .. ......+++.||..|||+.+. .+++||++||+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR--gqVvvigATnR 415 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR--GQVVVIGATNR 415 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC--CceEEEcccCC
Confidence 322 00 112345778899999999876 45999999999
Q ss_pred cCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823 319 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 386 (436)
Q Consensus 319 ~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~ 386 (436)
|+.+|||++||||||+.++||+|+.++|..|+...-.... ......-+..|+.. .++-+|++...|.
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-~~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-PPISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-CCCCHHHHHHHHHhccccchHHHHHHHH
Confidence 9999999999999999999999999999999988765542 33333444455554 3588888877663
No 34
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.85 E-value=1.5e-21 Score=220.86 Aligned_cols=170 Identities=18% Similarity=0.200 Sum_probs=119.6
Q ss_pred hHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC----------------------------------
Q 013823 234 RKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN---------------------------------- 279 (436)
Q Consensus 234 ~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~---------------------------------- 279 (436)
++..+.++|..+|+|+||+||||||||+||+|+|++.++++.....
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 4566788999999999999999999999999999999944321100
Q ss_pred ----------------------------------CCC----------CCCCCcceeecceeecccCcccC-CCCeEEEEE
Q 013823 280 ----------------------------------DGA----------SVGSNTKLTLSGILNFIDGLWSS-CGDERIIVF 314 (436)
Q Consensus 280 ----------------------------------~~~----------~~~~~~~~~~s~LL~~ldg~~~~-~~~~~ivI~ 314 (436)
++| ........+++.|+++|||.... ...+++||+
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIA 1777 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIA 1777 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEE
Confidence 000 00111123478889999987432 235699999
Q ss_pred ecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCC-CCCcHHHHHhhhhcC-CCCHHHHHHHHh------
Q 013823 315 TTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQST-DVTPAEVAEELM------ 386 (436)
Q Consensus 315 TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~-~~~~~~~i~~l~~~~-~~tpaei~~~l~------ 386 (436)
|||+|+.|||||+||||||++|+++.|+..+|++++...+...+- ......++..++..+ ++|+|||+..|-
T Consensus 1778 ATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliA 1857 (2281)
T CHL00206 1778 STHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSIS 1857 (2281)
T ss_pred eCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887755422210 111123455666654 699999998763
Q ss_pred --c------cCCHHHHHHHHHHHHH
Q 013823 387 --K------ADDADVALEGLVNFLK 403 (436)
Q Consensus 387 --~------~~~~~~al~~l~~~l~ 403 (436)
+ ..+.+.|+...+..++
T Consensus 1858 irq~ks~Id~~~I~~Al~Rq~~g~~ 1882 (2281)
T CHL00206 1858 ITQKKSIIDTNTIRSALHRQTWDLR 1882 (2281)
T ss_pred HHcCCCccCHHHHHHHHHHHHhhhh
Confidence 1 1245666666665554
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-21 Score=197.64 Aligned_cols=180 Identities=22% Similarity=0.321 Sum_probs=128.4
Q ss_pred cCCCCCCccc--ccChhH-HHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc----------
Q 013823 205 LEHPSTFDTL--AMDPEL-KQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS---------- 271 (436)
Q Consensus 205 ~~~~~~~~~i--~g~~~~-k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---------- 271 (436)
..+.-.|+++ +|.+.- -.-.+.....-+.-|+.-.++|++.-+|+|||||||||||.+|+.|...|+
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 3444468875 344333 333333334344468999999999999999999999999999999999998
Q ss_pred -----------------------------------------chhhcccCCC-CCCCCCcceeecceeecccCcccCCCCe
Q 013823 272 -----------------------------------------VEMKDRQNDG-ASVGSNTKLTLSGILNFIDGLWSSCGDE 309 (436)
Q Consensus 272 -----------------------------------------~~~~~r~~~~-~~~~~~~~~~~s~LL~~ldg~~~~~~~~ 309 (436)
++..-++..+ .+..+.....+++||.-|||+..- ++
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NN 369 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NN 369 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hc
Confidence 1111111111 122344556789999999999875 45
Q ss_pred EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCC--CCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKS--HSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~--~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
++||+.||+++.||+||+||||+..++++.+||.+.|.+|++.+-..-... .....++++|+..+ +||+|||...+.
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999988765432111 11123344444433 599999977664
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-21 Score=196.93 Aligned_cols=178 Identities=20% Similarity=0.190 Sum_probs=147.5
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA--- 282 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~--- 282 (436)
..+..|++++|++..|+.+.+.+..++..++.|..+. ++.+|+||.||||||||+|++|||.+.++.++.....+.
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3447899999999999999999999999999998763 566899999999999999999999999944433322111
Q ss_pred --------------------------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 283 --------------------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 283 --------------------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
.....+.+....+|..+++..+...+.++||+|||.|+.+|.
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~De 305 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDE 305 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHH
Confidence 223345566778888899998888889999999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHhc
Q 013823 325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELMK 387 (436)
Q Consensus 325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~~ 387 (436)
|++| ||...+++|.|++++|..+|.+++...+ ......+++.+++.+ +|+..+|.+.|..
T Consensus 306 a~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~-~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 306 AARR--RFVKRLYIPLPDYETRSLLWKQLLKEQP-NGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred HHHH--HhhceeeecCCCHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 9999 9999999999999999999999998762 333457888888765 4999999998863
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.84 E-value=1.2e-20 Score=186.56 Aligned_cols=162 Identities=15% Similarity=0.109 Sum_probs=109.0
Q ss_pred CCCCCCcccccC-hhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823 206 EHPSTFDTLAMD-PELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR------- 277 (436)
Q Consensus 206 ~~~~~~~~i~g~-~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r------- 277 (436)
....+|+++.|. --.+..+...+. .+ .+.+....|+.+|++++||||||||||++|+++|+++|+.+...
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~-hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s 186 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAV-HI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES 186 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHH-HH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence 334567777333 223333222222 11 23444557889999999999999999999999999999222100
Q ss_pred -----------------------cCCCC--------------CC-C-CC-cceeecceeecccCc--------c--cCCC
Q 013823 278 -----------------------QNDGA--------------SV-G-SN-TKLTLSGILNFIDGL--------W--SSCG 307 (436)
Q Consensus 278 -----------------------~~~~~--------------~~-~-~~-~~~~~s~LL~~ldg~--------~--~~~~ 307 (436)
...++ .. . .. .+....+||+.+|+. | ....
T Consensus 187 k~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 187 ENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 01111 00 0 11 122236788888763 3 1223
Q ss_pred CeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC
Q 013823 308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST 374 (436)
Q Consensus 308 ~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~ 374 (436)
..++||+|||+|+.|||||+||||||..+ ..|+.++|..|++.++... .....++..|+...
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~---~l~~~dv~~Lv~~f 328 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD---GVSREDVVKLVDTF 328 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC---CCCHHHHHHHHHcC
Confidence 56899999999999999999999999965 5899999999999998764 33357888887754
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=1.3e-20 Score=207.30 Aligned_cols=176 Identities=25% Similarity=0.331 Sum_probs=137.5
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------- 279 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------- 279 (436)
+..+|++|+|.+++++.|.+.+..++.+++.|..+|+.+++|+|||||||||||+++++||++++..+.....
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 4468999999999999999999999999999999999999999999999999999999999998833221100
Q ss_pred ------------------CCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823 280 ------------------DGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA 325 (436)
Q Consensus 280 ------------------~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A 325 (436)
.++ ..+.......+.|++.||++... ..++||+|||+++.||++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~--~~vivI~atn~~~~ld~a 330 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR--GRVIVIGATNRPDALDPA 330 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC--CCEEEEeecCChhhcCHH
Confidence 000 00111234567788899988654 458899999999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823 326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 386 (436)
Q Consensus 326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~ 386 (436)
++||||||..|+++.|+.++|..|++.+..... .....++..++.. .+++++++...+.
T Consensus 331 l~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~--l~~d~~l~~la~~t~G~~gadl~~l~~ 390 (733)
T TIGR01243 331 LRRPGRFDREIVIRVPDKRARKEILKVHTRNMP--LAEDVDLDKLAEVTHGFVGADLAALAK 390 (733)
T ss_pred HhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC--CccccCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999998775432 1112234445543 3599999887653
No 39
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-19 Score=187.97 Aligned_cols=174 Identities=24% Similarity=0.302 Sum_probs=144.2
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------- 279 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------- 279 (436)
++.+ ++++|...+...+.+.+..++..+..+...|.++|+|+|+|||||||||.+++|+|++.++.++....
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6667 89999999999999999999999999999999999999999999999999999999999933321110
Q ss_pred ------------------C-CC--------------C-CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823 280 ------------------D-GA--------------S-VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA 325 (436)
Q Consensus 280 ------------------~-~~--------------~-~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A 325 (436)
. +. . ......++.++|+..+||+.+. .++||++|||+|+.|||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~--~~vivl~atnrp~sld~a 336 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPD--AKVIVLAATNRPDSLDPA 336 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCc--CcEEEEEecCCccccChh
Confidence 0 00 0 0112567788999999999754 459999999999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823 326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 386 (436)
Q Consensus 326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~ 386 (436)
+.| ||||..++++.|+..+|..|++.+.... ......++..++.. .++++||+...|.
T Consensus 337 lRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~--~~~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 337 LRR-GRFDREVEIGIPGSDGRLDILRVLTKKM--NLLSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred hhc-CCCcceeeecCCCchhHHHHHHHHHHhc--CCcchhhHHHHHHHccchhHHHHHHHHH
Confidence 999 9999999999999999999999998776 33344566666654 5799999999886
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6.8e-18 Score=166.49 Aligned_cols=198 Identities=19% Similarity=0.183 Sum_probs=136.0
Q ss_pred ecccchhhHHhhhhHHHHHHHHHHHhcceEEEEeecCCCCCCCCCCCCCCCCccccccCCCCCCcccccChhHHHHHHHH
Q 013823 148 FHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDDDDGGGGGGMWGSINLEHPSTFDTLAMDPELKQMILDD 227 (436)
Q Consensus 148 f~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~ 227 (436)
+.++.-.+|.++|+..++.+...+++..+..--|+..-. . ..+.-..-.........+|++|++.+.++..|...
T Consensus 296 YTtkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls--~---~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~l 370 (630)
T KOG0742|consen 296 YTTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLS--A---LKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDL 370 (630)
T ss_pred eeccccchhHHHHHHHHcCCchhhhhhccccCCCcccHH--H---HhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHH
Confidence 456777889999999999999988887775544443210 0 00000001122334456799999999999998664
Q ss_pred HHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---CC---------CCCcceeecce
Q 013823 228 LDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA---SV---------GSNTKLTLSGI 295 (436)
Q Consensus 228 l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~---~~---------~~~~~~~~s~L 295 (436)
... -.+ .+....+-|.+|||||||||||++|+-||...|++..-....+. +. -+..+..-.+|
T Consensus 371 A~a-TaN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGL 445 (630)
T KOG0742|consen 371 AIA-TAN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGL 445 (630)
T ss_pred HHH-hcc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccce
Confidence 332 222 12234566899999999999999999999999966543332222 10 01233344566
Q ss_pred eecccCcc--------------------------cCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHH
Q 013823 296 LNFIDGLW--------------------------SSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVL 349 (436)
Q Consensus 296 L~~ldg~~--------------------------~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i 349 (436)
|-|||... .....+++++++||+|..+|-|+-. |||..|+||+|..++|..|
T Consensus 446 llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkl 523 (630)
T KOG0742|consen 446 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKL 523 (630)
T ss_pred EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHH
Confidence 66666421 1112458899999999999999999 9999999999999999999
Q ss_pred HHHHhccc
Q 013823 350 ASNYLGIK 357 (436)
Q Consensus 350 ~~~~l~~~ 357 (436)
+..||...
T Consensus 524 l~lYlnky 531 (630)
T KOG0742|consen 524 LNLYLNKY 531 (630)
T ss_pred HHHHHHHH
Confidence 99998653
No 41
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=9.3e-17 Score=154.65 Aligned_cols=153 Identities=27% Similarity=0.356 Sum_probs=116.7
Q ss_pred CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc-
Q 013823 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD- 276 (436)
Q Consensus 199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~- 276 (436)
.|.....+-.--|+.++.+..+|+.+..+....+.-.+....-. +.|.|-+|||||||||||+|++|+|+.+.+...+
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 45543334444688899999999999998876665333222222 5677889999999999999999999988711111
Q ss_pred ---------------------------------------------------------c-cCCCCCCCCCcceeecceeec
Q 013823 277 ---------------------------------------------------------R-QNDGASVGSNTKLTLSGILNF 298 (436)
Q Consensus 277 ---------------------------------------------------------r-~~~~~~~~~~~~~~~s~LL~~ 298 (436)
| .........+.-+.++.||..
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 1 111112234556788999999
Q ss_pred ccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 299 IDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 299 ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
||.+... .++++++|+|-.+.||.||.. |-|.+.++++|+.+++..|++..+.
T Consensus 289 lDrlK~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 289 LDRLKRY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHHhccC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 9999876 459999999999999999999 9999999999999999999988764
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.52 E-value=5.9e-14 Score=131.00 Aligned_cols=172 Identities=17% Similarity=0.171 Sum_probs=99.9
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS 283 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~ 283 (436)
..-.|.+|++++|++++++.+.-.+....... ....++||||||||||||||+.||++++..+...+.....
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 35678999999999999998765554332211 2235799999999999999999999999766544332111
Q ss_pred ----------------------CCCCcceeecceeecccCcc-----cCCC---------CeEEEEEecCCcCCCCcccc
Q 013823 284 ----------------------VGSNTKLTLSGILNFIDGLW-----SSCG---------DERIIVFTTNHKERIDPALL 327 (436)
Q Consensus 284 ----------------------~~~~~~~~~s~LL~~ldg~~-----~~~~---------~~~ivI~TTN~~~~lD~All 327 (436)
.+..++..-..|+..|+... ..+. ...-+|++|++...|.++|+
T Consensus 88 k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLr 167 (233)
T PF05496_consen 88 KAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLR 167 (233)
T ss_dssp SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCC
T ss_pred hHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHH
Confidence 01111111122333332211 0000 12468899999999999999
Q ss_pred CCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHHh
Q 013823 328 RPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEELM 386 (436)
Q Consensus 328 RpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l~ 386 (436)
. ||....++.+.+.++...|+.+.-...+ -....+....++....-||.-....+.
T Consensus 168 d--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 168 D--RFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp T--TSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred h--hcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 9 9999999999999999999987655542 122233344555556667665544443
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.48 E-value=9.3e-14 Score=136.53 Aligned_cols=139 Identities=19% Similarity=0.272 Sum_probs=93.9
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcc-e--eeEeCCCCCChhHHHHHHHHHhcc-------hhhcccC--
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKR-G--YLLYGPPGTGKSSLIAAMANYLSV-------EMKDRQN-- 279 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~r-g--~LL~GPpGtGKT~la~aiA~~l~~-------~~~~r~~-- 279 (436)
++++|.+++|++|.+.+.. +.....+...|...+. | +||+||||||||++|+++|..+.. .+.....
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999987654 5556677778876553 3 899999999999999999987630 0000000
Q ss_pred --------------------CCC-----CC---------CCCcceeecceeecccCcccCCCCeEEEEEecCCcC-----
Q 013823 280 --------------------DGA-----SV---------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE----- 320 (436)
Q Consensus 280 --------------------~~~-----~~---------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~----- 320 (436)
.+. +. ..........|+..|+.. .++++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~~~~~~ 177 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDRMDKFY 177 (287)
T ss_pred HHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHH
Confidence 000 00 001122233344445432 23467777775322
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.++|+|.+ ||+.+|+|+.++.+++..|+..++...
T Consensus 178 ~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 178 ESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred hcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 34699999 999999999999999999999998764
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.45 E-value=4.2e-14 Score=121.57 Aligned_cols=90 Identities=38% Similarity=0.585 Sum_probs=64.4
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhhcccCC--------------------------CC----------------CCCC
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMKDRQND--------------------------GA----------------SVGS 286 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~--------------------------~~----------------~~~~ 286 (436)
+|||||||||||++|+++|+.++.++...... ++ ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 68999999999999999999999332111100 00 0001
Q ss_pred CcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCC
Q 013823 287 NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY 340 (436)
Q Consensus 287 ~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~ 340 (436)
.....++.|++.++..... +.+++||+|||.++.+|++++| |||+..|++|.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 1233456677777777543 3458999999999999999998 89999999974
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.44 E-value=3.4e-13 Score=135.21 Aligned_cols=169 Identities=16% Similarity=0.180 Sum_probs=108.5
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC-
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV- 284 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~- 284 (436)
-.|.+|++++|.++.++.+...+...... ...+.++|||||||||||++|+++|++++..+..........
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~ 90 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP 90 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh
Confidence 45789999999999999987766532211 234578999999999999999999999985443221111000
Q ss_pred ---------------------CCCcceeecceeecccCcc-----cC---------CCCeEEEEEecCCcCCCCccccCC
Q 013823 285 ---------------------GSNTKLTLSGILNFIDGLW-----SS---------CGDERIIVFTTNHKERIDPALLRP 329 (436)
Q Consensus 285 ---------------------~~~~~~~~s~LL~~ldg~~-----~~---------~~~~~ivI~TTN~~~~lD~AllRp 329 (436)
+.........|.+.|+... .. .-....+|++||++..+++++.+
T Consensus 91 ~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s- 169 (328)
T PRK00080 91 GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD- 169 (328)
T ss_pred HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH-
Confidence 0000001111222222110 00 00126789999999999999988
Q ss_pred CceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHH
Q 013823 330 GRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL 385 (436)
Q Consensus 330 GR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l 385 (436)
||...++|+.++.+++..++.+.....+ .....+.+..++....-+|..+...+
T Consensus 170 -Rf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l 223 (328)
T PRK00080 170 -RFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLL 223 (328)
T ss_pred -hcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHH
Confidence 9999999999999999999998876643 22233445555555555555444443
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.44 E-value=3.5e-13 Score=130.83 Aligned_cols=140 Identities=16% Similarity=0.248 Sum_probs=90.5
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCc---ceeeEeCCCCCChhHHHHHHHHHhcc-------hhhc----
Q 013823 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLSV-------EMKD---- 276 (436)
Q Consensus 211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~---rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~~---- 276 (436)
+++++|.+++|+.|.+.+...... ....+.|...+ .++||+||||||||++|+++|+.+.. .+..
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 678999999999999877655433 44455665433 46899999999999999999987630 0000
Q ss_pred -------------------ccCCCC----CCC--------CCcceeecceeecccCcccCCCCeEEEEEecCCcC-----
Q 013823 277 -------------------RQNDGA----SVG--------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE----- 320 (436)
Q Consensus 277 -------------------r~~~~~----~~~--------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~----- 320 (436)
+..... +.+ ......+..|++.|+... ..+++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~----~~~~vila~~~~~~~~~~ 159 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR----NEFVLILAGYSDEMDYFL 159 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC----CCEEEEecCCcchhHHHH
Confidence 000000 000 000112233444444331 2355666554322
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.++|++.+ ||+.+|+||.++.+++..|+++++...
T Consensus 160 ~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 160 SLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred hcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 37889999 999999999999999999999998654
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.42 E-value=6e-13 Score=131.76 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=101.6
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC-----
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV----- 284 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~----- 284 (436)
+|++++|.+++++.|...+...... ...+.+++||||||||||++|+++|++++..+..........
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 6899999999999987766533221 123467999999999999999999999985542221110000
Q ss_pred -----------------CCCcceeecceeecccCccc--------------CCCCeEEEEEecCCcCCCCccccCCCcee
Q 013823 285 -----------------GSNTKLTLSGILNFIDGLWS--------------SCGDERIIVFTTNHKERIDPALLRPGRMD 333 (436)
Q Consensus 285 -----------------~~~~~~~~s~LL~~ldg~~~--------------~~~~~~ivI~TTN~~~~lD~AllRpGR~d 333 (436)
+.........|++.++.... ..-....+|++||++..+++++++ ||.
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~ 151 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFG 151 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcc
Confidence 00000111112222221110 001236788999999999999999 999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHH
Q 013823 334 VHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEV 381 (436)
Q Consensus 334 ~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei 381 (436)
..+.++.++.++...+++...+..+ .....+.+..++....-.|..+
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~-~~~~~~al~~ia~~~~G~pR~~ 198 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLN-VEIEPEAALEIARRSRGTPRIA 198 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHhCCCcchH
Confidence 9999999999999999988776442 2223334444554444344333
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.42 E-value=3.7e-13 Score=132.24 Aligned_cols=140 Identities=19% Similarity=0.266 Sum_probs=95.6
Q ss_pred Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC---cceeeEeCCCCCChhHHHHHHHHHhcc-------hhhcccC
Q 013823 211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYLSV-------EMKDRQN 279 (436)
Q Consensus 211 ~~-~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~---~rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~~r~~ 279 (436)
++ .++|.+++|++|.+.+.. +..+..+.+.|+.. ..++||+||||||||++|+++|..+.. .+.....
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 44 699999999999886664 66777788888764 347999999999999999999987741 0100000
Q ss_pred C----------------------CC-----CCC---------CCcceeecceeecccCcccCCCCeEEEEEecCC--cC-
Q 013823 280 D----------------------GA-----SVG---------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH--KE- 320 (436)
Q Consensus 280 ~----------------------~~-----~~~---------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~--~~- 320 (436)
. ++ +.+ .........|++.|+.. ..+++||++++. .+
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRMDS 174 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHH
Confidence 0 00 000 00111223344444432 234677777653 23
Q ss_pred --CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 321 --RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 321 --~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.++|+|.+ ||+.+|+||.++.+++..|+.+++...
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 25899999 999999999999999999999998764
No 49
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.5e-12 Score=135.59 Aligned_cols=176 Identities=23% Similarity=0.209 Sum_probs=111.1
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC---------
Q 013823 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV--------- 284 (436)
Q Consensus 214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~--------- 284 (436)
=.|.+++|+.|.+++.-....+ .-...-+||+||||+|||||+++||..+|-.++.-+..+..+
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 3588899999999886322211 111223779999999999999999999995555443332210
Q ss_pred ---CCCcce-----------eecceeecccCcccCCC------------------------------CeEEEEEecCCcC
Q 013823 285 ---GSNTKL-----------TLSGILNFIDGLWSSCG------------------------------DERIIVFTTNHKE 320 (436)
Q Consensus 285 ---~~~~~~-----------~~s~LL~~ldg~~~~~~------------------------------~~~ivI~TTN~~~ 320 (436)
+....+ .---||.++|.+.++.. .+|++|+|+|..+
T Consensus 398 TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred cccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence 111111 01125666665543321 2589999999999
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHH--hhhh-cCCCCHHHHHHHHhccCCHHHHHHH
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIE--GLIQ-STDVTPAEVAEELMKADDADVALEG 397 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~--~l~~-~~~~tpaei~~~l~~~~~~~~al~~ 397 (436)
.+|.+|+. || ..|+++-.+.++...|+++||=-. .++ .|-. ...++..-|.. ++++-..++.+++
T Consensus 478 tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk--------~~~~~gL~~~el~i~d~ai~~-iI~~YTREAGVR~ 545 (782)
T COG0466 478 TIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPK--------QLKEHGLKKGELTITDEAIKD-IIRYYTREAGVRN 545 (782)
T ss_pred cCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchH--------HHHHcCCCccceeecHHHHHH-HHHHHhHhhhhhH
Confidence 99999999 99 578999999999999999997321 111 1111 22355555433 3344445555666
Q ss_pred HHHHHHHHHHH
Q 013823 398 LVNFLKRKRIQ 408 (436)
Q Consensus 398 l~~~l~~~~~~ 408 (436)
|...+....++
T Consensus 546 LeR~i~ki~RK 556 (782)
T COG0466 546 LEREIAKICRK 556 (782)
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 50
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.38 E-value=2.4e-12 Score=121.72 Aligned_cols=151 Identities=19% Similarity=0.291 Sum_probs=112.4
Q ss_pred CCccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch---h
Q 013823 198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE---M 274 (436)
Q Consensus 198 ~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---~ 274 (436)
+...++....|..+++|+|.+.+|+.|.+....|+... +...+||+|++|||||++++|+.+++... +
T Consensus 13 ~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLRl 83 (249)
T PF05673_consen 13 GYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLRL 83 (249)
T ss_pred CcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence 45677777888899999999999999999999888632 45789999999999999999999988710 0
Q ss_pred hcc----------------cCCC-----CC--CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccc-----
Q 013823 275 KDR----------------QNDG-----AS--VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPAL----- 326 (436)
Q Consensus 275 ~~r----------------~~~~-----~~--~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~Al----- 326 (436)
... .... +. .-.........|-..|||-....+++++|.+|+|+...+++.+
T Consensus 84 Iev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~ 163 (249)
T PF05673_consen 84 IEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDRED 163 (249)
T ss_pred EEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccC
Confidence 000 0000 00 0112223346677788887777788999999999866554322
Q ss_pred -----cCC-----------CceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 327 -----LRP-----------GRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 327 -----lRp-----------GR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
+.| .||..+|.|..|+.++...|.++++...
T Consensus 164 ~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~ 210 (249)
T PF05673_consen 164 IQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY 210 (249)
T ss_pred CCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence 112 2999999999999999999999999765
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.37 E-value=2.9e-12 Score=142.03 Aligned_cols=135 Identities=30% Similarity=0.256 Sum_probs=89.2
Q ss_pred Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-------
Q 013823 211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA------- 282 (436)
Q Consensus 211 ~~-~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~------- 282 (436)
|+ ++.|++++|+.|.+++..... .+...+..+||+||||||||++|++||+.++..+......+.
T Consensus 318 l~~~~~G~~~~k~~i~~~~~~~~~-------~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 318 LDEDHYGLKKVKERILEYLAVQKL-------RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHh-------hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHc
Confidence 44 488999999999887664321 122233479999999999999999999999844332211100
Q ss_pred -----CCCCC-----------cceeecceeecccCcccCC------------------------------CCeEEEEEec
Q 013823 283 -----SVGSN-----------TKLTLSGILNFIDGLWSSC------------------------------GDERIIVFTT 316 (436)
Q Consensus 283 -----~~~~~-----------~~~~~s~LL~~ldg~~~~~------------------------------~~~~ivI~TT 316 (436)
..+.. ....---|++++|.+.+.. -.++++|+||
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~Tt 470 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATA 470 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEec
Confidence 00000 0000001333333332100 0257899999
Q ss_pred CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
|.++.+|++|++ ||+ .|+|+.|+.+++..|+++|+.
T Consensus 471 N~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 471 NSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred CCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 999999999999 996 789999999999999999873
No 52
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.34 E-value=2.9e-12 Score=122.25 Aligned_cols=165 Identities=17% Similarity=0.196 Sum_probs=107.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC-
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS- 283 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~- 283 (436)
.-.|..|++.+|++++|+.+.-++.....+. ...-.+|||||||.||||||+.||+++|+.+...+.....
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 3468899999999999999877665433222 2335799999999999999999999999655433322110
Q ss_pred ---------------------CCCCcceeecceeecccCcc--------cCCC------CeEEEEEecCCcCCCCccccC
Q 013823 284 ---------------------VGSNTKLTLSGILNFIDGLW--------SSCG------DERIIVFTTNHKERIDPALLR 328 (436)
Q Consensus 284 ---------------------~~~~~~~~~s~LL~~ldg~~--------~~~~------~~~ivI~TTN~~~~lD~AllR 328 (436)
.+.-+..+-.-|.-.|+.+. .+.. ...-+|++|.+...|...|..
T Consensus 91 ~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd 170 (332)
T COG2255 91 PGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH
Confidence 00111111112222333221 0000 124688999999999999998
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHH
Q 013823 329 PGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAE 380 (436)
Q Consensus 329 pGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpae 380 (436)
||....++.+.+.++...|+.+.-...+ -....+...+++..+.-||.-
T Consensus 171 --RFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 171 --RFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRI 219 (332)
T ss_pred --hcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHH
Confidence 9999999999999999999988755432 222233444555555566643
No 53
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4.7e-12 Score=132.32 Aligned_cols=133 Identities=19% Similarity=0.345 Sum_probs=87.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE----------- 273 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----------- 273 (436)
.-+|.+|++++|++.+++.|...+. . ...+.++|||||||||||++|+++|+.++..
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~----~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK----K--------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 4578999999999999887765443 1 1245679999999999999999999998732
Q ss_pred -------------hhcccCCC-CCCC---------------CC------------cceeecceeecccCcccCCCCeEEE
Q 013823 274 -------------MKDRQNDG-ASVG---------------SN------------TKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 274 -------------~~~r~~~~-~~~~---------------~~------------~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
+....... .+.+ +. .....+.|+..++. .+..+++
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~----p~~~vv~ 150 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE----PPSHVVF 150 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh----CCCcEEE
Confidence 11111100 0000 00 00011223333332 2244777
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
|++||.+..+++++.+ |+ ..++|..++.++...+++.....
T Consensus 151 Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 151 VLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred EEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHH
Confidence 7787788899999999 88 47999999999987777776543
No 54
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=7e-12 Score=129.71 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=90.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---------- 274 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---------- 274 (436)
...|.+|++|+|++.+.+.|...+.. | ..+..+||+||||||||++|+++|+.++...
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 56789999999999999887665541 1 2345699999999999999999999987421
Q ss_pred --------------hcccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823 275 --------------KDRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 275 --------------~~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
....... .+ .+..+....+.||..|+. ....+++
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE----Pp~~viF 154 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE----PPAHIVF 154 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc----CCCceEE
Confidence 0000000 00 000011122233333332 2345888
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.++.|.+++++ |+ .++.|..++.++....+++.+...
T Consensus 155 ILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~E 196 (484)
T PRK14956 155 ILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIE 196 (484)
T ss_pred EeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999 98 568898888888777777766544
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1e-11 Score=126.19 Aligned_cols=134 Identities=15% Similarity=0.215 Sum_probs=89.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------- 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------- 276 (436)
...|.+|++|+|++.+++.+...+.. | ..+..+||+||||||||++|+++|+.++.....
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34689999999999999988665541 1 245679999999999999999999998622100
Q ss_pred ----------------ccCCC-CC----------------C-----------CCCcceeecceeecccCcccCCCCeEEE
Q 013823 277 ----------------RQNDG-AS----------------V-----------GSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 277 ----------------r~~~~-~~----------------~-----------~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
..... .. . +.......+.||..++.. ...+.+
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~----~~~~~f 152 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP----PQHIKF 152 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC----CCCeEE
Confidence 00000 00 0 000000112233333321 234677
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.++.+.+++.. |+ ..++|+.++.++....+...+...
T Consensus 153 Il~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~ 194 (363)
T PRK14961 153 ILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKE 194 (363)
T ss_pred EEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 8888888999999987 88 678999999999888888766554
No 56
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2e-11 Score=128.32 Aligned_cols=133 Identities=24% Similarity=0.262 Sum_probs=89.5
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC--------
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV-------- 284 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~-------- 284 (436)
|=.|.+++|+.|.+++.--. -.|-..+.-++|+||||.|||+++++||..||-.++.-+..+..+
T Consensus 412 DHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 45688899999998775211 112233445889999999999999999999995544332222100
Q ss_pred ----CCCccee-----------ecceeecccCcccCC-C-----------------------------CeEEEEEecCCc
Q 013823 285 ----GSNTKLT-----------LSGILNFIDGLWSSC-G-----------------------------DERIIVFTTNHK 319 (436)
Q Consensus 285 ----~~~~~~~-----------~s~LL~~ldg~~~~~-~-----------------------------~~~ivI~TTN~~ 319 (436)
+....+. ---|+.++|.+.+.. | ..+++|+|+|..
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~i 564 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVI 564 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecccc
Confidence 0000000 001334444332110 0 258999999999
Q ss_pred CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
+.|+++|+. ||. .|+++-...++...|+++||-
T Consensus 565 dtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 565 DTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred ccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 999999999 994 789999999999999999984
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=1.2e-11 Score=132.90 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=91.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
..+|.+|++|+|++.+++.|...+. +...+..||||||+|||||++++++|+.++....
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 4568999999999999998877654 1134567999999999999999999999874211
Q ss_pred ---------------cccCCCC-CCC------------CCcceeecceeecccCcc-----------cCCCCeEEEEEec
Q 013823 276 ---------------DRQNDGA-SVG------------SNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTT 316 (436)
Q Consensus 276 ---------------~r~~~~~-~~~------------~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TT 316 (436)
..+.... ..+ .......-.++.+.+.+. ......+++|++|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 0000000 000 000000001222222221 1112358899999
Q ss_pred CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|.+++|.+.+++ |+ .++.|..++.++....++..+..+
T Consensus 157 td~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~E 194 (830)
T PRK07003 157 TDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEE 194 (830)
T ss_pred CChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHc
Confidence 999999999999 99 789999999999888888777554
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=6.5e-12 Score=133.22 Aligned_cols=134 Identities=18% Similarity=0.270 Sum_probs=93.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---------- 274 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---------- 274 (436)
..+|.+|++|+|++.+++.|.+.+.. ...+..+||+||+|||||++|+++|+.++..-
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 45789999999999999988776651 12456799999999999999999999997521
Q ss_pred -------------------hcccCCC-CC---------------------------CCCCcceeecceeecccCcccCCC
Q 013823 275 -------------------KDRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCG 307 (436)
Q Consensus 275 -------------------~~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~ 307 (436)
....... .. .+..+....+.||..|+. ..
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE----PP 152 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE----PP 152 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc----CC
Confidence 0000000 00 000011122223333333 23
Q ss_pred CeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 308 ~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
..+++|++||.++.|.+.+++ |+ .++.|..++.++....+...+...
T Consensus 153 ~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHc
Confidence 457899999999999999999 98 788999999999888887776544
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=99.28 E-value=3.6e-11 Score=126.69 Aligned_cols=143 Identities=23% Similarity=0.303 Sum_probs=95.6
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS 283 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~ 283 (436)
....|.+|++|+|+++.++.+.+.+..+.. |. +++++|||||||||||++|+++|++++.++......+..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 356789999999999999999888875542 22 268899999999999999999999998544333222110
Q ss_pred --------------CCCCc-ceeecceeecccCcccCC-------------CCeEEEEEecCCcCCCCccccCCCceeEE
Q 013823 284 --------------VGSNT-KLTLSGILNFIDGLWSSC-------------GDERIIVFTTNHKERIDPALLRPGRMDVH 335 (436)
Q Consensus 284 --------------~~~~~-~~~~s~LL~~ldg~~~~~-------------~~~~ivI~TTN~~~~lD~AllRpGR~d~~ 335 (436)
..... ....--++...|++.... .....+|+++|.+..+++.-+| +....
T Consensus 77 ~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lr--sr~~~ 154 (482)
T PRK04195 77 TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELR--NACLM 154 (482)
T ss_pred cHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHh--ccceE
Confidence 00000 000112444445443210 1124577889999988873344 33468
Q ss_pred EEcCCCCHHHHHHHHHHHhccc
Q 013823 336 INMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 336 I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|+|+.|+..+...++...+...
T Consensus 155 I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 155 IEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred EEecCCCHHHHHHHHHHHHHHc
Confidence 9999999999988888877554
No 60
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.1e-11 Score=129.42 Aligned_cols=134 Identities=13% Similarity=0.186 Sum_probs=91.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---------- 274 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---------- 274 (436)
...|.+|++|+|++.+++.+...+. ....+.++||+||||||||++|+++|+.++...
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~------------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT------------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 4568999999999999987765443 113467899999999999999999999875211
Q ss_pred --------------hcccCCCC----------------------------CCCCCcceeecceeecccCcccCCCCeEEE
Q 013823 275 --------------KDRQNDGA----------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 275 --------------~~r~~~~~----------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
...+..+. +.+..+....+.||..|+.- .+.+++
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP----p~~v~f 149 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP----APHVKF 149 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC----CCCeEE
Confidence 11111000 00001111233344455443 244788
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.++.+.+.+++ |+ ..++|..++.++....+...+...
T Consensus 150 Ilatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~E 191 (491)
T PRK14964 150 ILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKE 191 (491)
T ss_pred EEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHc
Confidence 8888999999999998 88 678999999998887777766554
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.1e-11 Score=131.80 Aligned_cols=134 Identities=15% Similarity=0.273 Sum_probs=90.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---------- 274 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---------- 274 (436)
..+|.+|++|+|++.+++.|...+. ....+.+|||+||||||||++|+++|+.++..-
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 4568999999999999998877654 123457899999999999999999999987321
Q ss_pred --------------hcccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823 275 --------------KDRQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 275 --------------~~r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
........ . .+..+....+.||..|+.. .+.+.+
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP----P~~v~F 151 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP----PEHVKF 151 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC----CCCcEE
Confidence 00000000 0 0000011112233333321 244778
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++||.+..+++.+++ |+ .+++|..++.++....+...+...
T Consensus 152 ILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 152 LFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred EEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHc
Confidence 8888989999999887 88 688999999999888887776654
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=3e-11 Score=126.88 Aligned_cols=134 Identities=17% Similarity=0.218 Sum_probs=90.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC---CC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN---DG 281 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~---~~ 281 (436)
..+|.+|++++|++.+.+.+...+. ....+.++||+||||||||++|+++|+.++........ ..
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~------------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTIL------------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 5678999999999999987766443 11345789999999999999999999999742210000 00
Q ss_pred C------------------------CC-----------------------------CCCcceeecceeecccCcccCCCC
Q 013823 282 A------------------------SV-----------------------------GSNTKLTLSGILNFIDGLWSSCGD 308 (436)
Q Consensus 282 ~------------------------~~-----------------------------~~~~~~~~s~LL~~ldg~~~~~~~ 308 (436)
| .. +..+....+.|+..|+. ...
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe----pp~ 157 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE----PPP 157 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh----cCC
Confidence 0 00 00000111223333332 234
Q ss_pred eEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 309 ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 309 ~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.+++|++|+.++.+++++.+ |+ ..++|..++.++...++...+...
T Consensus 158 ~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 158 HIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred CEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHc
Confidence 57888888999999999998 88 678999999999888888777654
No 63
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=3.9e-11 Score=128.13 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=90.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
...|.+|++|+|++.+++.+...+.. ...+..||||||||||||++|+++|+.++..-.
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 34689999999999999988776652 134578999999999999999999998862210
Q ss_pred ---------------cccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823 276 ---------------DRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 276 ---------------~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
...... .. .+.......+.||..++.. ...+++
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep----p~~~if 152 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP----PAHVIF 152 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC----CCCeEE
Confidence 000000 00 0000111122344444332 345788
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.++.+++.+++ |+. .++|+.|+.++....+...+...
T Consensus 153 Ilatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~e 194 (559)
T PRK05563 153 ILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKE 194 (559)
T ss_pred EEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHc
Confidence 8888889999999998 884 68899999988877777766544
No 64
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.7e-11 Score=129.30 Aligned_cols=134 Identities=14% Similarity=0.255 Sum_probs=89.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
..+|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.++..-.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 45689999999999999988776641 124567999999999999999999999973210
Q ss_pred ---------------cccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823 276 ---------------DRQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 276 ---------------~r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
.....+. . .+..+....+.||..|+.. .+.+.+
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep----p~~~~f 152 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP----PSHVKF 152 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc----CCCeEE
Confidence 0000000 0 0000111222333333332 244778
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.+..+.+.+++ |+ ..++|..++.++....+.+.+...
T Consensus 153 Ilattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~e 194 (509)
T PRK14958 153 ILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEE 194 (509)
T ss_pred EEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 8888889999999888 88 677899888888776666666544
No 65
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.23 E-value=8.4e-11 Score=117.02 Aligned_cols=135 Identities=20% Similarity=0.247 Sum_probs=90.3
Q ss_pred CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ 278 (436)
Q Consensus 199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~ 278 (436)
.|. ....|.+|++++|+++.++.+...+. .| ..+..+|||||||+|||++++++|++++.++....
T Consensus 10 ~w~--~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~ 75 (316)
T PHA02544 10 MWE--QKYRPSTIDECILPAADKETFKSIVK-----------KG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN 75 (316)
T ss_pred cce--eccCCCcHHHhcCcHHHHHHHHHHHh-----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence 464 36778999999999999998877654 11 23456778999999999999999999874332211
Q ss_pred CCCCCC-----------------CC-----------C-cceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCC
Q 013823 279 NDGASV-----------------GS-----------N-TKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRP 329 (436)
Q Consensus 279 ~~~~~~-----------------~~-----------~-~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRp 329 (436)
...... .. . .......|.+.++.. .....+|+|||.+..+++++.+
T Consensus 76 ~~~~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~----~~~~~~Ilt~n~~~~l~~~l~s- 150 (316)
T PHA02544 76 GSDCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY----SKNCSFIITANNKNGIIEPLRS- 150 (316)
T ss_pred cCcccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc----CCCceEEEEcCChhhchHHHHh-
Confidence 111000 00 0 000011122223322 2346788999999999999999
Q ss_pred CceeEEEEcCCCCHHHHHHHHHHHh
Q 013823 330 GRMDVHINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 330 GR~d~~I~~~~p~~~~r~~i~~~~l 354 (436)
|+. .+.|+.|+.+++..++..++
T Consensus 151 -R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 151 -RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred -hce-EEEeCCCCHHHHHHHHHHHH
Confidence 995 78999999999887766543
No 66
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.22 E-value=3.1e-11 Score=120.25 Aligned_cols=137 Identities=21% Similarity=0.288 Sum_probs=86.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV 284 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~ 284 (436)
.-+|.+|++++|++.+...- .-+...+. -..-.+++|||||||||||+|+.||+.++..+...+....+.
T Consensus 17 rmRP~~lde~vGQ~HLlg~~-~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gv 86 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEG-KPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGV 86 (436)
T ss_pred HhCCCCHHHhcChHhhhCCC-chHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccH
Confidence 45689999999998876431 11111111 122357999999999999999999999997766554433311
Q ss_pred CC------Cccee---ecceeecccCccc---CC---------CCeEEEEEe-c-CCcCCCCccccCCCceeEEEEcCCC
Q 013823 285 GS------NTKLT---LSGILNFIDGLWS---SC---------GDERIIVFT-T-NHKERIDPALLRPGRMDVHINMSYC 341 (436)
Q Consensus 285 ~~------~~~~~---~s~LL~~ldg~~~---~~---------~~~~ivI~T-T-N~~~~lD~AllRpGR~d~~I~~~~p 341 (436)
.+ ..+.. -...+-++|.+.. .. ...+++|++ | |..-.|.+||++ |. .+.++...
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L 163 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLS--RA-RVFELKPL 163 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecC
Confidence 10 00000 0123334444321 10 123666664 4 444589999999 87 67788999
Q ss_pred CHHHHHHHHHHHh
Q 013823 342 TVHGFKVLASNYL 354 (436)
Q Consensus 342 ~~~~r~~i~~~~l 354 (436)
+.++..+++.+-+
T Consensus 164 ~~~di~~~l~ra~ 176 (436)
T COG2256 164 SSEDIKKLLKRAL 176 (436)
T ss_pred CHHHHHHHHHHHH
Confidence 9999998888843
No 67
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.21 E-value=3.8e-11 Score=115.71 Aligned_cols=130 Identities=26% Similarity=0.314 Sum_probs=84.4
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-hh-cc----
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-MK-DR---- 277 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-~~-~r---- 277 (436)
....|.+|++++|++.+.+.+...+.. .---.||||||||||||+.|+++|.+++-+ +. .+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 367799999999999999999887762 111359999999999999999999999831 10 00
Q ss_pred cCC---CC-------------------C---------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823 278 QND---GA-------------------S---------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320 (436)
Q Consensus 278 ~~~---~~-------------------~---------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~ 320 (436)
..+ +. . .+......-+.|.+.||... ....+|+.||+++
T Consensus 95 naSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s----~~trFiLIcnyls 170 (346)
T KOG0989|consen 95 NASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS----RTTRFILICNYLS 170 (346)
T ss_pred cccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc----cceEEEEEcCChh
Confidence 000 00 0 00111112233444555432 3378899999999
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNY 353 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~ 353 (436)
.|++.+.+ |+. +..|+....+....-++..
T Consensus 171 rii~pi~S--RC~-KfrFk~L~d~~iv~rL~~I 200 (346)
T KOG0989|consen 171 RIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKI 200 (346)
T ss_pred hCChHHHh--hHH-HhcCCCcchHHHHHHHHHH
Confidence 99999998 884 5567666555444444433
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=6.7e-11 Score=124.63 Aligned_cols=134 Identities=20% Similarity=0.323 Sum_probs=89.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---------- 274 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---------- 274 (436)
...|.+|++|+|++++++.|...+.. ...+..+|||||||||||++|+++|+.+...-
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 45689999999999999888776552 12446689999999999999999999886311
Q ss_pred -------------hcccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCeEEEE
Q 013823 275 -------------KDRQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERIIV 313 (436)
Q Consensus 275 -------------~~r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI 313 (436)
........ . .+.......+.|+..|+. .....++|
T Consensus 75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe----p~~~t~~I 150 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE----PPEHVIFI 150 (504)
T ss_pred hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh----CCCCEEEE
Confidence 00000000 0 000000111122222222 22457888
Q ss_pred EecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 314 FTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 314 ~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
++||.+..+++++.+ |+. +++|+.++.++....+...+...
T Consensus 151 l~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~e 191 (504)
T PRK14963 151 LATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAE 191 (504)
T ss_pred EEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHc
Confidence 889999999999998 874 78999999999888888776554
No 69
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=6e-11 Score=127.36 Aligned_cols=134 Identities=16% Similarity=0.276 Sum_probs=91.2
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
..+|.+|++|+|++.+++.|...+.. ...+..|||+||||||||++|+++|+.++....
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 34689999999999999988765541 124567999999999999999999999874311
Q ss_pred ---------------cccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823 276 ---------------DRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 276 ---------------~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
...... .. .+..+....+.||..|+. ..+.+++
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE----Pp~~v~F 152 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE----PPEHVKF 152 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc----CCCCeEE
Confidence 000000 00 000011112223333332 2244778
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.++.|.+.+++ |+ .+++|..++.++....+.+.+...
T Consensus 153 IL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 153 LLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred EEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 8888899999999998 97 889999999999888888776443
No 70
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.21 E-value=5.4e-11 Score=120.15 Aligned_cols=134 Identities=17% Similarity=0.312 Sum_probs=90.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
...|.+|++++|.+++++.+.+.+.. | ..+..+|||||||+|||++|+++|+.+.....
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 45688999999999999988776541 1 24567999999999999999999998752210
Q ss_pred ---------------cccCCC-CC---------------CCC------------CcceeecceeecccCcccCCCCeEEE
Q 013823 276 ---------------DRQNDG-AS---------------VGS------------NTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 276 ---------------~r~~~~-~~---------------~~~------------~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
...... .. ..+ ......+.|+..++. .....++
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~----~~~~~~l 150 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE----PPEHVVF 150 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC----CccceeE
Confidence 000000 00 000 000111223333332 2345778
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++||.++.+.+++.+ |+ ..++|+.|+.++...++..++...
T Consensus 151 Il~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~ 192 (355)
T TIGR02397 151 ILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKE 192 (355)
T ss_pred EEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHc
Confidence 8889999999999988 88 578999999999888888877654
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=5.9e-11 Score=129.70 Aligned_cols=134 Identities=17% Similarity=0.279 Sum_probs=90.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------- 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------- 276 (436)
..+|.+|++|+|++.+++.|...+. . ...+..|||+||||||||++|+++|+.++.....
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~----~--------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALT----Q--------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----h--------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 4568999999999999988766544 1 1245678999999999999999999999743110
Q ss_pred ----------------ccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823 277 ----------------RQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 277 ----------------r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
..... .. .+.......+.||..|+.- ...+++
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP----P~~vrF 152 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP----PEHVKF 152 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc----CCCeEE
Confidence 00000 00 0000111122233333321 234677
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.+..|.+.+++ |+ .++.|..++.++....+.+.+...
T Consensus 153 ILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 153 LLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred EEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 7888889999999998 88 789999999999888888776543
No 72
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=6.1e-11 Score=128.14 Aligned_cols=134 Identities=21% Similarity=0.292 Sum_probs=91.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------- 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------- 276 (436)
..+|.+|++|+|++.+++.+...+.. ...+.+||||||||||||++|+++|..+...-..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 56789999999999999988776651 1345789999999999999999999988642110
Q ss_pred -------------ccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEEEEe
Q 013823 277 -------------RQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFT 315 (436)
Q Consensus 277 -------------r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~T 315 (436)
....+ .. .+.......+.||..|+.. ++.+++|++
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP----P~~tifILa 154 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP----PKHVIFILA 154 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC----CCceEEEEE
Confidence 00000 00 0000011122344444432 345788888
Q ss_pred cCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 316 TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 316 TN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|+.++.|.+++++ |+ .+++|..++.++....+...+...
T Consensus 155 Tte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~ke 193 (725)
T PRK07133 155 TTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKE 193 (725)
T ss_pred cCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHc
Confidence 8999999999998 88 589999999998877777665443
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=3.4e-11 Score=129.04 Aligned_cols=134 Identities=17% Similarity=0.275 Sum_probs=91.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------- 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------- 276 (436)
..+|.+|++|+|++.+++.|...+.. ...+.+|||+||||||||++|+++|+.++..-..
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 45689999999999999988776651 1345789999999999999999999988632110
Q ss_pred ----------------ccCCC-CCC---------------------------CCCcceeecceeecccCcccCCCCeEEE
Q 013823 277 ----------------RQNDG-ASV---------------------------GSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 277 ----------------r~~~~-~~~---------------------------~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
..... ... +..+....+.||..|+.. .+.+.+
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP----p~~v~f 152 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP----PEHVKF 152 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC----CCCcEE
Confidence 00000 000 000001112233333321 234788
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++||.+..+.+.+++ |+ ..+.|+.++.++....+.+.+...
T Consensus 153 ILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kE 194 (709)
T PRK08691 153 ILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSE 194 (709)
T ss_pred EEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 8899999999999887 88 678889999999888888777655
No 74
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=4.6e-11 Score=126.75 Aligned_cols=134 Identities=14% Similarity=0.271 Sum_probs=89.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---------- 274 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---------- 274 (436)
..+|.+|++++|++.+++.+...+. ....+.++||+||||||||++|+++|+.+...-
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~------------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL------------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4578999999999999988876553 113457899999999999999999999886210
Q ss_pred --------------hcccCCC-CCCC---------------CC------------cceeecceeecccCcccCCCCeEEE
Q 013823 275 --------------KDRQNDG-ASVG---------------SN------------TKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 275 --------------~~r~~~~-~~~~---------------~~------------~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
....... ...+ .. .....+.||..|+.. ++..++
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP----p~~tvf 152 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP----PKHVVF 152 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC----CCcEEE
Confidence 0000000 0000 00 000112233333332 245788
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.+..|.+++++ |+. .++|+.++.++....+...+...
T Consensus 153 IL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~ke 194 (605)
T PRK05896 153 IFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKE 194 (605)
T ss_pred EEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHc
Confidence 8888899999999998 884 78999999998887777766543
No 75
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=7.5e-11 Score=125.79 Aligned_cols=134 Identities=19% Similarity=0.312 Sum_probs=91.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------- 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------- 276 (436)
...|.+|++|+|++.+++.|...+.. | ..+..||||||||||||++|+++|+.++..-..
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 45689999999999999988776541 1 244579999999999999999999988732100
Q ss_pred ------------------ccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCeE
Q 013823 277 ------------------RQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDER 310 (436)
Q Consensus 277 ------------------r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ 310 (436)
...... + .+..+....+.||..|+.. .+.+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp----p~~~ 149 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP----PEHL 149 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC----CCCe
Confidence 000000 0 0000111222344444432 2458
Q ss_pred EEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 311 ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
++|++|+.++.|.+++++ |+ .+++|..++.++....+...+...
T Consensus 150 ~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~e 193 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQE 193 (584)
T ss_pred EEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence 888888999999999998 86 689999999988887777776654
No 76
>PLN03025 replication factor C subunit; Provisional
Probab=99.18 E-value=7.6e-11 Score=117.78 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=87.2
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----hhcccC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----MKDRQN 279 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----~~~r~~ 279 (436)
...|.+|++++|++++++.|...+. . + .. ..+|||||||||||++|+++|+++.-. ......
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~-~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIAR----D-------G-NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHh----c-------C-CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 5689999999999998887765433 1 1 11 359999999999999999999987311 111110
Q ss_pred CCCCC----------------CCCcceeecceeecccCccc-----------CCCCeEEEEEecCCcCCCCccccCCCce
Q 013823 280 DGASV----------------GSNTKLTLSGILNFIDGLWS-----------SCGDERIIVFTTNHKERIDPALLRPGRM 332 (436)
Q Consensus 280 ~~~~~----------------~~~~~~~~s~LL~~ldg~~~-----------~~~~~~ivI~TTN~~~~lD~AllRpGR~ 332 (436)
.+... ........--+++++|.+.. ..+....+|++||.+..+.+++.+ |+
T Consensus 73 sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S--Rc 150 (319)
T PLN03025 73 SDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS--RC 150 (319)
T ss_pred cccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH--hh
Confidence 00000 00000001113344443321 112235678899999999999998 87
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 333 DVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 333 d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
..++|+.|+.++....+.......
T Consensus 151 -~~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 151 -AIVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred -hcccCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999887777766544
No 77
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=9.3e-11 Score=129.56 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=91.9
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh--------
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK-------- 275 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~-------- 275 (436)
....|.+|++|+|++.+++.|...+.. ...+..||||||+|||||++|++||+.|+..-.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 356789999999999999988776541 123467999999999999999999999973210
Q ss_pred ------------------cccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCe
Q 013823 276 ------------------DRQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDE 309 (436)
Q Consensus 276 ------------------~r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~ 309 (436)
....... . .+..+....+.||+.|+.. .+.
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp----P~~ 150 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP----PEH 150 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC----CCC
Confidence 0000000 0 0000111122344444443 245
Q ss_pred EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
+++|++|+.++.|-+.++. |+ .+++|..++.++...++...+...
T Consensus 151 ~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred eEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence 7888888999999999988 87 688999999998888888776544
No 78
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.2e-10 Score=124.69 Aligned_cols=134 Identities=16% Similarity=0.259 Sum_probs=89.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------- 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------- 276 (436)
..+|.+|++|+|++.+++.|...+.. ...+..|||+||+|||||++|+++|+.++..-..
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 45689999999999999888775541 1245679999999999999999999998742110
Q ss_pred ---------------------ccCCCC-C---------------------------CCCCcceeecceeecccCcccCCC
Q 013823 277 ---------------------RQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCG 307 (436)
Q Consensus 277 ---------------------r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~ 307 (436)
.+.... . .+..+....+.||..|+. ..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE----PP 152 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE----PP 152 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc----CC
Confidence 000000 0 000001111222322222 12
Q ss_pred CeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 308 ~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
+.+++|++|+.+..+.+.+++ |+ .+++|..++.++....+...+...
T Consensus 153 ~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~e 199 (618)
T PRK14951 153 EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAE 199 (618)
T ss_pred CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHc
Confidence 447788888889999999888 88 788999999998887777766544
No 79
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=6.6e-11 Score=125.57 Aligned_cols=134 Identities=17% Similarity=0.267 Sum_probs=90.2
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------- 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------- 276 (436)
..+|.+|++|+|++.+++.+...+.. ...+..|||+||||||||++|+++|+.++.+...
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34678999999999999988776541 1345679999999999999999999998742110
Q ss_pred ----------------ccCC-CC---------------------------CCCCCcceeecceeecccCcccCCCCeEEE
Q 013823 277 ----------------RQND-GA---------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 277 ----------------r~~~-~~---------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
.... .. +.+..+....+.||..|+.. .+.+++
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep----p~~~~f 152 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP----PEHVKF 152 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC----CCCEEE
Confidence 0000 00 00000111122344444332 244778
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.++.+.+.+++ |+ ..++|..++.++....+...+...
T Consensus 153 IL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~e 194 (527)
T PRK14969 153 ILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQE 194 (527)
T ss_pred EEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHc
Confidence 8888889999988887 87 788999999998887777766543
No 80
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=9.3e-11 Score=119.96 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=89.8
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc------------
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD------------ 276 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~------------ 276 (436)
..|++|+|++.+++.+...+..... .+...+...+.++||+||||+|||++|+++|+.+..+...
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 3589999999999999888764332 2344455577899999999999999999999987533100
Q ss_pred -----------ccC--CCCC---------------------------CCCCcceeecceeecccCcccCCCCeEEEEEec
Q 013823 277 -----------RQN--DGAS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT 316 (436)
Q Consensus 277 -----------r~~--~~~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TT 316 (436)
... .... .+.......+.||..|+.- .+..++|++|
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep----~~~~~fIL~a 154 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP----PPRTVWLLCA 154 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC----CCCCeEEEEE
Confidence 000 0000 0000111123344444432 2346677777
Q ss_pred CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHH
Q 013823 317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASN 352 (436)
Q Consensus 317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~ 352 (436)
+.++.|.|++++ |+ ..|.|+.|+.++....+..
T Consensus 155 ~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 155 PSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred CChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 779999999999 88 7999999999987766653
No 81
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=7.2e-11 Score=126.63 Aligned_cols=134 Identities=15% Similarity=0.228 Sum_probs=90.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
...|.+|++|+|++++++.|...+.. ...+..||||||||||||++|+++|+.++..-.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 45689999999999999988776541 134578999999999999999999999873210
Q ss_pred ---------------cccCCCC-C---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823 276 ---------------DRQNDGA-S---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 276 ---------------~r~~~~~-~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
....... . .+..+....+.||..|+.- .+.+++
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep----p~~~~f 152 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP----PPHVKF 152 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC----CCCeEE
Confidence 0000000 0 0000011122334444332 345888
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++||.++.|.+.+++ |+ .+++|..++.++....+...+...
T Consensus 153 Il~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~e 194 (576)
T PRK14965 153 IFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQE 194 (576)
T ss_pred EEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHh
Confidence 8999999999999998 87 588999999988777777665544
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.3e-10 Score=122.91 Aligned_cols=134 Identities=16% Similarity=0.262 Sum_probs=88.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
...|.+|++|+|++.+++.+...+.. ...+..+||+||||||||++|+++|+.++....
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 45689999999999999887765541 123467999999999999999999998863110
Q ss_pred ---------------cccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823 276 ---------------DRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 276 ---------------~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
...... .+ .+..+....+.||..|+.. .+.+++
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep----p~~v~f 152 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP----PEYVKF 152 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC----CCCceE
Confidence 000000 00 0000111122344444432 244677
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.+..+.+++++ |+ ..++|..++.++....+...+...
T Consensus 153 IL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~e 194 (546)
T PRK14957 153 ILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKE 194 (546)
T ss_pred EEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHc
Confidence 7777778999988888 88 789999999998877777765543
No 83
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=2.7e-10 Score=115.97 Aligned_cols=134 Identities=16% Similarity=0.292 Sum_probs=88.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
..+|.+|++|+|++..++.+...+.. ...+.++|||||||+|||++|+++|+.+.....
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 46789999999999998888776641 134578999999999999999999998863110
Q ss_pred ---cccCCCCC-------------C-C--C------------CcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 276 ---DRQNDGAS-------------V-G--S------------NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 276 ---~r~~~~~~-------------~-~--~------------~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
........ . . + ......+.|+..++. .....++|++||.+..+.+
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~----~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE----PPAHAIFILATTEKHKIIP 153 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC----CCCceEEEEEeCCcccCCH
Confidence 00000000 0 0 0 000011223333332 1234677788888899999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
++.+ |+ ..++|+.|+.++...++.......
T Consensus 154 ~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~ 183 (367)
T PRK14970 154 TILS--RC-QIFDFKRITIKDIKEHLAGIAVKE 183 (367)
T ss_pred HHHh--cc-eeEecCCccHHHHHHHHHHHHHHc
Confidence 9988 76 468999999988877777655443
No 84
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=2.2e-10 Score=119.46 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=88.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
...|.+|++|+|++.+++.+...+.. ...+..+|||||||||||++|+++|+.+.....
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 35689999999999999888776641 134578999999999999999999998863210
Q ss_pred ----------------cccCCCC-CCC---------------CC------------cceeecceeecccCcccCCCCeEE
Q 013823 276 ----------------DRQNDGA-SVG---------------SN------------TKLTLSGILNFIDGLWSSCGDERI 311 (436)
Q Consensus 276 ----------------~r~~~~~-~~~---------------~~------------~~~~~s~LL~~ldg~~~~~~~~~i 311 (436)
....... +.+ .. .....+.|+..|+.- .+.++
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep----~~~~~ 153 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP----PQHVK 153 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC----CCCce
Confidence 0000000 000 00 000112233333332 24577
Q ss_pred EEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 312 IVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 312 vI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
+|++||.+..|.+++.+ |+ ..++|+.++.++....+...+..
T Consensus 154 ~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 154 FFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred EEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 88888999999999998 88 47899999999877777766543
No 85
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=2.9e-10 Score=119.77 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=90.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE----------- 273 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----------- 273 (436)
..+|.+|++|+|++.+++.+...+. ....+..||||||||+|||++|+++|+.+...
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~------------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD------------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4568999999999999988877654 11356779999999999999999999988421
Q ss_pred -------------hhcccCCC-C---------------------------CCCCCcceeecceeecccCcccCCCCeEEE
Q 013823 274 -------------MKDRQNDG-A---------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 274 -------------~~~r~~~~-~---------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
+....... . +.+.......+.||..|+.. ...+.+
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp----p~~t~F 150 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP----PSYVKF 150 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc----CCceEE
Confidence 10000000 0 00001111222334444332 234677
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccC
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG 358 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~ 358 (436)
|++|+.+..|.+++++ |+ .+++|..++.++....+...+...+
T Consensus 151 IL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EG 193 (535)
T PRK08451 151 ILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEG 193 (535)
T ss_pred EEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcC
Confidence 7888888999999998 86 6889999999988777777665543
No 86
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.12 E-value=2e-10 Score=118.72 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=84.7
Q ss_pred cCCCCCCcccccChhHHHH---HHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC
Q 013823 205 LEHPSTFDTLAMDPELKQM---ILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG 281 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~---i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~ 281 (436)
.-+|.+|++++|++++... +...+. . ....++||+||||||||++|+++|+.++..+.......
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~----~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIE----A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHH----c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 4568999999999988655 544432 1 12357999999999999999999999885443332221
Q ss_pred CCCCC------------CcceeecceeecccCcccC---------CCCeEEEEEec--CCcCCCCccccCCCceeEEEEc
Q 013823 282 ASVGS------------NTKLTLSGILNFIDGLWSS---------CGDERIIVFTT--NHKERIDPALLRPGRMDVHINM 338 (436)
Q Consensus 282 ~~~~~------------~~~~~~s~LL~~ldg~~~~---------~~~~~ivI~TT--N~~~~lD~AllRpGR~d~~I~~ 338 (436)
..... ......--+++.++.+... ....+++|++| |....+++++++ |+ ..+.|
T Consensus 72 ~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~ 148 (413)
T PRK13342 72 SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLS--RA-QVFEL 148 (413)
T ss_pred ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhc--cc-eeeEe
Confidence 11000 0000000122222222100 01235556554 345589999999 98 78899
Q ss_pred CCCCHHHHHHHHHHHhcc
Q 013823 339 SYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 339 ~~p~~~~r~~i~~~~l~~ 356 (436)
+.++.++...++.+.+..
T Consensus 149 ~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 149 KPLSEEDIEQLLKRALED 166 (413)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998887754
No 87
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=2.6e-10 Score=121.57 Aligned_cols=133 Identities=17% Similarity=0.263 Sum_probs=90.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---------- 274 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---------- 274 (436)
..+|.+|++|+|++.+++.+...+.. ...+..||||||||+|||++|+++|+.++..-
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 45689999999999999988776651 12456799999999999999999999987321
Q ss_pred --------------hcccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823 275 --------------KDRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 275 --------------~~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
....... .. .+..+....+.||..++. ....+++
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe----pp~~~vf 152 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE----PPPYIVF 152 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc----CCCCEEE
Confidence 0000000 00 000011122334444443 2345788
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
|++|+.+..|.+++++ |+. .++|..++.++....+...+..
T Consensus 153 I~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~ 193 (563)
T PRK06647 153 IFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLE 193 (563)
T ss_pred EEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHH
Confidence 8888889999999998 884 6899999998887777766543
No 88
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.8e-10 Score=122.79 Aligned_cols=134 Identities=17% Similarity=0.284 Sum_probs=89.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
...|.+|++|+|++.+++.|...+.. | ..+..|||+||||||||++|+++|+.++....
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 56789999999999998888776541 1 23458999999999999999999999974210
Q ss_pred ---------------cccCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeEEE
Q 013823 276 ---------------DRQNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 276 ---------------~r~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
...... .. .+.......+.||..|+.- ...+++
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP----~~~~if 152 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP----PARVTF 152 (624)
T ss_pred HHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc----CCCEEE
Confidence 000000 00 0000001112233333331 245788
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++||.+..+.+.+++ |+ .+|+|+.++.++...++...+...
T Consensus 153 ILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 153 VLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred EEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999888 88 578999999998887777765443
No 89
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2.6e-10 Score=119.79 Aligned_cols=134 Identities=17% Similarity=0.255 Sum_probs=89.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------- 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------- 276 (436)
..+|.+|++++|++.+.+.+...+.. ...+..||||||||||||++|+++|..++..-..
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 45788999999999999988776641 1345679999999999999999999988631000
Q ss_pred ----------------ccCCC-CCC---------------------------CCCcceeecceeecccCcccCCCCeEEE
Q 013823 277 ----------------RQNDG-ASV---------------------------GSNTKLTLSGILNFIDGLWSSCGDERII 312 (436)
Q Consensus 277 ----------------r~~~~-~~~---------------------------~~~~~~~~s~LL~~ldg~~~~~~~~~iv 312 (436)
..... .+. +.......+.||..++.. ....++
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep----p~~~v~ 152 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP----PPRTIF 152 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC----CCCeEE
Confidence 00000 000 000001112233333332 234677
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|++|+.++.+++++.+ |+ ..+.|+.++.++....+...+...
T Consensus 153 Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~e 194 (486)
T PRK14953 153 ILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEE 194 (486)
T ss_pred EEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHc
Confidence 7778888899999988 77 478999999999888888776554
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=4.5e-10 Score=120.41 Aligned_cols=135 Identities=16% Similarity=0.252 Sum_probs=91.5
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc-C---
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ-N--- 279 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~-~--- 279 (436)
....|.+|++|+|++.+++.|...+.. | ..+.++||+||||+|||++|+++|+.++....... .
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 356789999999999999988776541 1 34568999999999999999999999874321111 0
Q ss_pred CCCC------------------------C-----------------------------CCCcceeecceeecccCcccCC
Q 013823 280 DGAS------------------------V-----------------------------GSNTKLTLSGILNFIDGLWSSC 306 (436)
Q Consensus 280 ~~~~------------------------~-----------------------------~~~~~~~~s~LL~~ldg~~~~~ 306 (436)
..|+ . +..+....+.||..|+..
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP---- 159 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP---- 159 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC----
Confidence 0000 0 000000112233333322
Q ss_pred CCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 307 GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 307 ~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.+.+++|++|+.++.+.+.+++ |+ ..++|..++.++....+...+...
T Consensus 160 p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~ke 207 (598)
T PRK09111 160 PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKE 207 (598)
T ss_pred CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 2447788888888899989888 88 579999999999888888776554
No 91
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=2.5e-10 Score=117.48 Aligned_cols=133 Identities=14% Similarity=0.240 Sum_probs=86.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc-------c
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------R 277 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------r 277 (436)
.-.|.+|++|+|++.+++.|...+.. ...+.++|||||||||||++|+++|+.+...... .
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 45689999999999999987665541 1345679999999999999999999999752100 0
Q ss_pred cCCCCC-------------------CC-C---------------------C------------cceeecceeecccCccc
Q 013823 278 QNDGAS-------------------VG-S---------------------N------------TKLTLSGILNFIDGLWS 304 (436)
Q Consensus 278 ~~~~~~-------------------~~-~---------------------~------------~~~~~s~LL~~ldg~~~ 304 (436)
...+|+ ++ . . .....+.|+..++.
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe--- 153 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE--- 153 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc---
Confidence 000000 00 0 0 00001112222222
Q ss_pred CCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 305 SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 305 ~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
..+..++|++|+.+..+-+++.+ |+. .++|+.++.++....+...+..
T Consensus 154 -p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 154 -PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred -CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHH
Confidence 22346777777888888888887 774 7899999988877777766543
No 92
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.07 E-value=9.7e-10 Score=102.78 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=110.3
Q ss_pred CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc---hhh
Q 013823 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV---EMK 275 (436)
Q Consensus 199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---~~~ 275 (436)
...+++..+|..+.+|+|-+.+|+.+.+....|+... +...+||+|..|||||+|++|+-++++. .+.
T Consensus 47 ~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 47 YLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred cccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 4556667778899999999999999999998887632 3468999999999999999999998871 111
Q ss_pred cccCC---------------C------CC--CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcccc-C---
Q 013823 276 DRQND---------------G------AS--VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALL-R--- 328 (436)
Q Consensus 276 ~r~~~---------------~------~~--~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~All-R--- 328 (436)
..... + |. .-+........|-..|||-.+..+++|+|.+|+|+...|+.-+. +
T Consensus 118 EV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~ 197 (287)
T COG2607 118 EVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGS 197 (287)
T ss_pred EEcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCc
Confidence 00000 0 00 01122233455667788877777788999999998777653221 0
Q ss_pred ----------------CCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 329 ----------------PGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 329 ----------------pGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
..||...+.|+.|+.++..+|+.+|....
T Consensus 198 ~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~ 242 (287)
T COG2607 198 TGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF 242 (287)
T ss_pred ccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHc
Confidence 23999999999999999999999998655
No 93
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.06 E-value=6.5e-10 Score=122.82 Aligned_cols=134 Identities=29% Similarity=0.235 Sum_probs=89.1
Q ss_pred Ccc-cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC------
Q 013823 211 FDT-LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS------ 283 (436)
Q Consensus 211 ~~~-i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~------ 283 (436)
++. ..|.+++|+.|.+++..... .+...+..++|+||||||||++++++|+.++..+...+..+..
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 554 88999999999887763322 1222334689999999999999999999998544322111100
Q ss_pred ------CCCCcce-----------eecceeecccCcccCC------------------------------CCeEEEEEec
Q 013823 284 ------VGSNTKL-----------TLSGILNFIDGLWSSC------------------------------GDERIIVFTT 316 (436)
Q Consensus 284 ------~~~~~~~-----------~~s~LL~~ldg~~~~~------------------------------~~~~ivI~TT 316 (436)
.+..... .---|++++|.+.... -.++++|+||
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta 472 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS 472 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence 0000000 0002444444432211 0358899999
Q ss_pred CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
|.. .|+|||+. ||+ .|.++.++.++...|++++|.
T Consensus 473 N~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 473 NSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 987 59999999 996 689999999999999999984
No 94
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=6.5e-10 Score=119.43 Aligned_cols=133 Identities=15% Similarity=0.238 Sum_probs=87.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR------- 277 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r------- 277 (436)
.-+|.+|++|+|++.+++.|...+. ....+.+|||+||||||||++|+++|+.++..-...
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 3468999999999999998766543 124557799999999999999999999997531100
Q ss_pred cCCCCC-------------------CC-C---------------------C------------cceeecceeecccCccc
Q 013823 278 QNDGAS-------------------VG-S---------------------N------------TKLTLSGILNFIDGLWS 304 (436)
Q Consensus 278 ~~~~~~-------------------~~-~---------------------~------------~~~~~s~LL~~ldg~~~ 304 (436)
...+|+ ++ . . .....+.||..|+.-
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-- 154 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-- 154 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC--
Confidence 000000 00 0 0 000011233333332
Q ss_pred CCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 305 SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 305 ~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
.+..++|++|+.+..|-+++.+ |. ..++|..++.++....+...+..
T Consensus 155 --p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 155 --PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred --CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHH
Confidence 2346777777888999999888 77 68899999998877766665543
No 95
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.05 E-value=8.7e-10 Score=110.37 Aligned_cols=137 Identities=14% Similarity=0.149 Sum_probs=84.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh-----hcccC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM-----KDRQN 279 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~-----~~r~~ 279 (436)
...|.+|++++|.+++++.+...+.. + ...++|||||||||||++|+++|+++.... .....
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 55789999999999988888665431 1 113699999999999999999999885211 00000
Q ss_pred CCC--------CCCC--------------------------------CcceeecceeecccCcc-----------cCCCC
Q 013823 280 DGA--------SVGS--------------------------------NTKLTLSGILNFIDGLW-----------SSCGD 308 (436)
Q Consensus 280 ~~~--------~~~~--------------------------------~~~~~~s~LL~~ldg~~-----------~~~~~ 308 (436)
... ..+. ......--++..+|.+. ....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~ 154 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSR 154 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccC
Confidence 000 0000 00000001222222221 01122
Q ss_pred eEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 309 ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 309 ~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
...+|+||+.+..+.+++.+ |+ ..++|+.|+.++...++...+...
T Consensus 155 ~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 155 TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 34566777777788888887 76 578999999999888888876654
No 96
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=8.4e-10 Score=118.82 Aligned_cols=134 Identities=15% Similarity=0.243 Sum_probs=87.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC--
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA-- 282 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~-- 282 (436)
...|.+|++|+|++.+++.|...+.. ...+..+|||||||||||++|+++|+.++..........|
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 45689999999999999988765541 1234568999999999999999999988632210000000
Q ss_pred ----------------------CC-----------------CC------------CcceeecceeecccCcccCCCCeEE
Q 013823 283 ----------------------SV-----------------GS------------NTKLTLSGILNFIDGLWSSCGDERI 311 (436)
Q Consensus 283 ----------------------~~-----------------~~------------~~~~~~s~LL~~ldg~~~~~~~~~i 311 (436)
.. .. ......+.||..|+.. ....+
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep----p~~tv 152 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP----PPHAI 152 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC----CCCeE
Confidence 00 00 0000112233333322 23467
Q ss_pred EEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 312 IVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 312 vI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
+|++|+.++.+.+.+.+ |+ ..++|+.++..+...++...+...
T Consensus 153 ~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~e 195 (585)
T PRK14950 153 FILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAE 195 (585)
T ss_pred EEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHc
Confidence 78888888888888887 77 468999999988877777765543
No 97
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.02 E-value=1e-09 Score=116.75 Aligned_cols=45 Identities=33% Similarity=0.256 Sum_probs=39.1
Q ss_pred EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
++|++|||.|+.|+|++++ |+ ..|.|+.++.+++..|+++.+...
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~ 279 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKI 279 (531)
T ss_pred EEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHc
Confidence 6777888999999999999 98 478899999999999999988654
No 98
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.5e-09 Score=117.18 Aligned_cols=133 Identities=18% Similarity=0.275 Sum_probs=86.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR------- 277 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r------- 277 (436)
...|.+|++++|++++++.|...+.. | ....++|||||||||||++|+++|+.++......
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 45689999999999999988776551 1 1345799999999999999999999987421100
Q ss_pred -------------------cCCC-CC---------------------------CCCCcceeecceeecccCcccCCCCeE
Q 013823 278 -------------------QNDG-AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDER 310 (436)
Q Consensus 278 -------------------~~~~-~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ 310 (436)
.... .. .+.......+.||..|+. .....
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe----Pp~~t 152 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE----PPPRV 152 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc----CCcCe
Confidence 0000 00 000000112223334433 22447
Q ss_pred EEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 311 IIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 311 ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
++|++|++++.+-+++++ |+ ..++|+.++.++....+......
T Consensus 153 vfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 153 VFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred EEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHH
Confidence 788888889999999988 88 56889988888766555554433
No 99
>PRK06893 DNA replication initiation factor; Validated
Probab=99.00 E-value=1.9e-09 Score=102.62 Aligned_cols=141 Identities=13% Similarity=0.146 Sum_probs=76.6
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc-----chhhcc
Q 013823 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-----VEMKDR 277 (436)
Q Consensus 203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~r 277 (436)
+....+.+||+.++.+... +...+.. .........++||||||||||+|++|+|+++. +.+...
T Consensus 7 ~~~~~~~~fd~f~~~~~~~--~~~~~~~---------~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL--LLDSLRK---------NFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH--HHHHHHH---------HhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 3456678999998766421 2121111 11111224579999999999999999999863 111000
Q ss_pred cCCCCC------------------CCC--CcceeecceeecccCcccCCCCeEEEEEecC-CcCCCC---ccccCCCcee
Q 013823 278 QNDGAS------------------VGS--NTKLTLSGILNFIDGLWSSCGDERIIVFTTN-HKERID---PALLRPGRMD 333 (436)
Q Consensus 278 ~~~~~~------------------~~~--~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN-~~~~lD---~AllRpGR~d 333 (436)
...... .+. .....-..|++.++..... +..++|+|+| .|..++ |.+.+..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~~l~~~~~~L~sRl~~g 153 (229)
T PRK06893 76 SKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPHALSIKLPDLASRLTWG 153 (229)
T ss_pred HHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChHHccccchhHHHHHhcC
Confidence 000000 000 0000001122223322221 2245555554 566654 7888833445
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcc
Q 013823 334 VHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 334 ~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
..++++.|+.+++..++++....
T Consensus 154 ~~~~l~~pd~e~~~~iL~~~a~~ 176 (229)
T PRK06893 154 EIYQLNDLTDEQKIIVLQRNAYQ 176 (229)
T ss_pred CeeeCCCCCHHHHHHHHHHHHHH
Confidence 78899999999999999887643
No 100
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.00 E-value=1.1e-09 Score=114.38 Aligned_cols=134 Identities=18% Similarity=0.310 Sum_probs=97.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh-----------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------- 274 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------- 274 (436)
.+|.+|++++|++.+.+.|...+.. .....+|||.||.||||||+|+.+|+.++..-
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 4578999999999999999887651 12346899999999999999999999998221
Q ss_pred -------------hcccCCC---C-------------------------CCCCCcceeecceeecccCcccCCCCeEEEE
Q 013823 275 -------------KDRQNDG---A-------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIV 313 (436)
Q Consensus 275 -------------~~r~~~~---~-------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI 313 (436)
...+..+ . +.+..++...+.||.-++.- ...+++|
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP----P~hV~FI 153 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP----PSHVKFI 153 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC----ccCeEEE
Confidence 0000000 0 00112233445566555543 3459999
Q ss_pred EecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccC
Q 013823 314 FTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG 358 (436)
Q Consensus 314 ~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~ 358 (436)
++|..++++++.+++ |+ .+..|...+.++....+...+...+
T Consensus 154 lATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 154 LATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred EecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcC
Confidence 999999999999998 88 5678899999998888888887654
No 101
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.9e-09 Score=116.33 Aligned_cols=134 Identities=17% Similarity=0.271 Sum_probs=89.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc--------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-------- 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-------- 276 (436)
...|.+|++|+|++.+++.|...+.. ...+..||||||+|+|||++|+++|+.+......
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 45789999999999999988776651 1345779999999999999999999988622100
Q ss_pred -----------------ccCCCCC----------------------------CCCCcceeecceeecccCcccCCCCeEE
Q 013823 277 -----------------RQNDGAS----------------------------VGSNTKLTLSGILNFIDGLWSSCGDERI 311 (436)
Q Consensus 277 -----------------r~~~~~~----------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~i 311 (436)
....+.. .+..+....+.|+..|+.. .+..+
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep----p~~ti 153 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP----PSYAI 153 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC----CCCeE
Confidence 0000000 0000011122234444432 23467
Q ss_pred EEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 312 IVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 312 vI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
+|++|+.+..|-+++++ |+ ..++|..++.++....+...+...
T Consensus 154 fIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~e 196 (614)
T PRK14971 154 FILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKE 196 (614)
T ss_pred EEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHc
Confidence 78888888899999998 87 568999999998877777665544
No 102
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=8.2e-09 Score=102.87 Aligned_cols=126 Identities=15% Similarity=0.172 Sum_probs=85.2
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc--------hhhcccC--
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV--------EMKDRQN-- 279 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~--------~~~~r~~-- 279 (436)
+|++|+|++.+++.+...+. ....+..||||||+|+|||++|+++|..+.. ++.....
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 68999999999998877653 1245578999999999999999999997641 1111100
Q ss_pred -CCC-----------------CC----------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCc
Q 013823 280 -DGA-----------------SV----------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGR 331 (436)
Q Consensus 280 -~~~-----------------~~----------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR 331 (436)
... .. +..+....+.||..++.- .+..++|++|+.++.|-|.+++ |
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep----p~~t~~il~~~~~~~ll~TI~S--R 143 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP----PKGVFIILLCENLEQILDTIKS--R 143 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHHh--h
Confidence 000 00 001111223455555542 3457888888889999999998 8
Q ss_pred eeEEEEcCCCCHHHHHHHHHHHh
Q 013823 332 MDVHINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 332 ~d~~I~~~~p~~~~r~~i~~~~l 354 (436)
+ .+++|+.|+.++....+...+
T Consensus 144 c-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 144 C-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred c-eeeeCCCcCHHHHHHHHHHHh
Confidence 8 589999999988766665443
No 103
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.96 E-value=3.6e-09 Score=104.99 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=87.6
Q ss_pred CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----
Q 013823 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---- 274 (436)
Q Consensus 199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---- 274 (436)
.|. ....|.+|++++|.+++++.+...+.. + ....+|||||||||||++++++++++....
T Consensus 6 ~w~--~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 6 IWV--EKYRPRTLDEIVGQEEIVERLKSYVKE-----------K--NMPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred ccc--hhhCCCcHHHhcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 454 367789999999999988888765531 1 112589999999999999999999874111
Q ss_pred -hcccCCCCC-----------------CC-CCcce------------eecceeecccCcccCCCCeEEEEEecCCcCCCC
Q 013823 275 -KDRQNDGAS-----------------VG-SNTKL------------TLSGILNFIDGLWSSCGDERIIVFTTNHKERID 323 (436)
Q Consensus 275 -~~r~~~~~~-----------------~~-~~~~~------------~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD 323 (436)
......... .. ...+. ....|+..++.. .....+|+++|.+..+.
T Consensus 71 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~----~~~~~lIl~~~~~~~l~ 146 (319)
T PRK00440 71 FLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY----SQNTRFILSCNYSSKII 146 (319)
T ss_pred eEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC----CCCCeEEEEeCCccccc
Confidence 000000000 00 00000 011122222222 23356778888888888
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
+++.+ |+. .++|+.++.++...++..++...
T Consensus 147 ~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~ 177 (319)
T PRK00440 147 DPIQS--RCA-VFRFSPLKKEAVAERLRYIAENE 177 (319)
T ss_pred hhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHc
Confidence 88888 775 58999999999888888887654
No 104
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.95 E-value=9.4e-09 Score=102.93 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=84.7
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc-------chhhccc-
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-------VEMKDRQ- 278 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-------~~~~~r~- 278 (436)
.|.+|.+|+|+++.++.+.-.+.. +...++||+||||||||++|+++|+.+. .+.....
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 467899999999999877543220 1125799999999999999999999983 2100000
Q ss_pred -----------------------CCCC-------C---------CC-----------------------CCcceeeccee
Q 013823 279 -----------------------NDGA-------S---------VG-----------------------SNTKLTLSGIL 296 (436)
Q Consensus 279 -----------------------~~~~-------~---------~~-----------------------~~~~~~~s~LL 296 (436)
.... + .+ .....+.+.|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Ll 149 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLL 149 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHH
Confidence 0000 0 00 00111122233
Q ss_pred ecccC---------cccCCCCeEEEEEecCCcC-CCCccccCCCceeEEEEcCCCCH-HHHHHHHHHHhc
Q 013823 297 NFIDG---------LWSSCGDERIIVFTTNHKE-RIDPALLRPGRMDVHINMSYCTV-HGFKVLASNYLG 355 (436)
Q Consensus 297 ~~ldg---------~~~~~~~~~ivI~TTN~~~-~lD~AllRpGR~d~~I~~~~p~~-~~r~~i~~~~l~ 355 (436)
+.|+. ........+++|+|+|..+ .++++++. ||...|.+++|.. +++.+++.+...
T Consensus 150 e~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 150 DVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred HHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 33321 1111123467888888655 58999999 9999999999988 788888887543
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.94 E-value=3.9e-09 Score=116.59 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=84.0
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh----------cchhhc
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------SVEMKD 276 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 276 (436)
.|..++.++|.++..+.+.+.+. ...+.++||+||||||||++|+++|..+ +..+..
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 56789999999888887665443 1234689999999999999999999987 211111
Q ss_pred cc-----CCCCCCCCC---ccee------ecceeecccCcc---cC------------------CCCeEEEEEecCCcC-
Q 013823 277 RQ-----NDGASVGSN---TKLT------LSGILNFIDGLW---SS------------------CGDERIIVFTTNHKE- 320 (436)
Q Consensus 277 r~-----~~~~~~~~~---~~~~------~s~LL~~ldg~~---~~------------------~~~~~ivI~TTN~~~- 320 (436)
.+ ......+.. -+.. ....+-++|.+. .. ...++.+|++||..+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEY 323 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHH
Confidence 00 000000000 0000 001112222221 00 013477888888643
Q ss_pred ----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 321 ----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 321 ----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
.+|+|+.| ||. .|+++.|+.+++..|++.....
T Consensus 324 ~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 324 KNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred HHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 57999999 997 7999999999999999976544
No 106
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.94 E-value=3.6e-09 Score=100.36 Aligned_cols=138 Identities=16% Similarity=0.231 Sum_probs=74.8
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc-----chhhccc
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-----VEMKDRQ 278 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~r~ 278 (436)
....|.+||++++... +.+...+..... +....++++|+||||||||+||+++++++. .......
T Consensus 10 ~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 10 GPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 4456678999773321 122222322211 233457899999999999999999999862 1110000
Q ss_pred C-------C-CC------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC---CCCccccCCCce--eEEEEcC
Q 013823 279 N-------D-GA------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE---RIDPALLRPGRM--DVHINMS 339 (436)
Q Consensus 279 ~-------~-~~------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~---~lD~AllRpGR~--d~~I~~~ 339 (436)
. . .. +.+.........|+..++..... ...++|+|++.+. .+.+.+.+ || ...|++|
T Consensus 80 ~~~~~~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~--~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~ 155 (227)
T PRK08903 80 SPLLAFDFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAH--GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELK 155 (227)
T ss_pred HhHHHHhhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHc--CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEec
Confidence 0 0 00 00000111112234444443322 2234566665432 34566666 77 5799999
Q ss_pred CCCHHHHHHHHHHHhc
Q 013823 340 YCTVHGFKVLASNYLG 355 (436)
Q Consensus 340 ~p~~~~r~~i~~~~l~ 355 (436)
.|+.++...++..+..
T Consensus 156 pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 156 PLSDADKIAALKAAAA 171 (227)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999888777776554
No 107
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.4e-09 Score=112.75 Aligned_cols=160 Identities=17% Similarity=0.213 Sum_probs=102.6
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh----------------
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK---------------- 275 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~---------------- 275 (436)
++++..+..|+...++...+ +..+..+||+||+|||||.|++++++++..++.
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 56777777777766543322 233467999999999999999999999871110
Q ss_pred -------------------------cc---cCCCCCCCC---CcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 276 -------------------------DR---QNDGASVGS---NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 276 -------------------------~r---~~~~~~~~~---~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
+. ...+...++ .....+..+++.+-......+..+.+|+|.+..+.|.|
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 00 000001111 11112333443222222222345689999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHH
Q 013823 325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAE 383 (436)
Q Consensus 325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~ 383 (436)
-|..|++|+.++.+|.|...+|.+|+.+.+...- ......++.-++..+ +|.+-|+.-
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~-~~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL-SDITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhh-hhhhhHHHHHHHHhcCCccchhHHH
Confidence 9999999999999999999999999999986542 223344444455444 366665543
No 108
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=2.5e-08 Score=101.30 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=87.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ------ 278 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~------ 278 (436)
..+|+++++|+|+++.++.+.+.+.. ...+.++||+||+|+||+++|.++|+.+-..-....
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 36899999999999999998776551 235678999999999999999999998852210000
Q ss_pred ------CCCC---------------------CCCC--------------------------------------Ccceeec
Q 013823 279 ------NDGA---------------------SVGS--------------------------------------NTKLTLS 293 (436)
Q Consensus 279 ------~~~~---------------------~~~~--------------------------------------~~~~~~s 293 (436)
...+ .... .+....+
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aan 159 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAAN 159 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHH
Confidence 0000 0000 0000011
Q ss_pred ceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823 294 GILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 294 ~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l 354 (436)
.||..++. .....++|++|+.++.+.|.+++ |+ ..|.|+.|+.++...++....
T Consensus 160 aLLK~LEe----pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 160 ALLKVLEE----PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred HHHHHHhc----CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 12222221 12347888999999999999887 88 688999999999887777654
No 109
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.1e-09 Score=111.96 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=89.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC-------------------------CC-------------CCCCCc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND-------------------------GA-------------SVGSNT 288 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~-------------------------~~-------------~~~~~~ 288 (436)
-.+||+|+||||||++++++|.++|..++..+.. +. .+++..
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged 511 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGED 511 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchh
Confidence 4599999999999999999999999443322110 00 111111
Q ss_pred ceee---cceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHH
Q 013823 289 KLTL---SGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFG 365 (436)
Q Consensus 289 ~~~~---s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~ 365 (436)
.+.+ ..++. +|..... ...+|||+||+..+.+++.+.+ -|-+.|.+|.|+.++|.+|++-|+... .-....
T Consensus 512 ~rl~~~i~~~ls-~e~~~~~-~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~--~~n~~v 585 (953)
T KOG0736|consen 512 ARLLKVIRHLLS-NEDFKFS-CPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHL--PLNQDV 585 (953)
T ss_pred HHHHHHHHHHHh-cccccCC-CCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhcc--ccchHH
Confidence 1111 11222 2333322 3468999999999999999998 888999999999999999999998654 222223
Q ss_pred HHHhhhhcC-CCCHHHHHHHHh
Q 013823 366 EIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 366 ~i~~l~~~~-~~tpaei~~~l~ 386 (436)
..+.++... +|+.+++...+.
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhc
Confidence 344555544 589988866543
No 110
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.87 E-value=7.7e-09 Score=97.63 Aligned_cols=135 Identities=14% Similarity=0.174 Sum_probs=72.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc---hhh-----c
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV---EMK-----D 276 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---~~~-----~ 276 (436)
...+.+|++.+.. ..+.+.+.+...+. ...++.++|+||||||||++|+++++++.. .+. .
T Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 8 LPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 4455678888731 22333333332221 133578999999999999999999987741 100 0
Q ss_pred ccC------C---C--C----CCCCCcce--eecceeecccCcccCCCCeEEEEEecC-CcCCCC---ccccCCCce--e
Q 013823 277 RQN------D---G--A----SVGSNTKL--TLSGILNFIDGLWSSCGDERIIVFTTN-HKERID---PALLRPGRM--D 333 (436)
Q Consensus 277 r~~------~---~--~----~~~~~~~~--~~s~LL~~ldg~~~~~~~~~ivI~TTN-~~~~lD---~AllRpGR~--d 333 (436)
... . . . +.+..... ....|...++..... + ..+|+|+| .+..++ +.+.+ |+ .
T Consensus 77 ~~~~~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~--~-~~iIits~~~~~~~~~~~~~L~~--r~~~~ 151 (226)
T TIGR03420 77 LAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREA--G-GRLLIAGRAAPAQLPLRLPDLRT--RLAWG 151 (226)
T ss_pred HHHhHHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--C-CeEEEECCCChHHCCcccHHHHH--HHhcC
Confidence 000 0 0 0 00000000 011223333322211 1 24455555 444432 66776 66 4
Q ss_pred EEEEcCCCCHHHHHHHHHHHhc
Q 013823 334 VHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 334 ~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
.+|.+|.|+.+++..+++.+..
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHH
Confidence 7899999999999988887654
No 111
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.87 E-value=7.2e-09 Score=113.41 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=82.2
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV 284 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~ 284 (436)
.-+|.+|++++|++.+.... ..+...+.. ....++|||||||||||++|+++|+.++..+..........
T Consensus 21 k~RP~tldd~vGQe~ii~~~-~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i 90 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEG-RLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGV 90 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhh-HHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhh
Confidence 45589999999999887531 112222211 12246899999999999999999998874432221111100
Q ss_pred CC-------------CcceeecceeecccCcccC---------CCCeEEEEEec--CCcCCCCccccCCCceeEEEEcCC
Q 013823 285 GS-------------NTKLTLSGILNFIDGLWSS---------CGDERIIVFTT--NHKERIDPALLRPGRMDVHINMSY 340 (436)
Q Consensus 285 ~~-------------~~~~~~s~LL~~ldg~~~~---------~~~~~ivI~TT--N~~~~lD~AllRpGR~d~~I~~~~ 340 (436)
.. ......--++..++.+... ....+++|++| |....+++++++ |+ ..+.|+.
T Consensus 91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~p 167 (725)
T PRK13341 91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVS--RS-RLFRLKS 167 (725)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhc--cc-cceecCC
Confidence 00 0000001123333322110 11235566544 334578999998 75 4689999
Q ss_pred CCHHHHHHHHHHHhc
Q 013823 341 CTVHGFKVLASNYLG 355 (436)
Q Consensus 341 p~~~~r~~i~~~~l~ 355 (436)
++.+++..++++.+.
T Consensus 168 Ls~edi~~IL~~~l~ 182 (725)
T PRK13341 168 LSDEDLHQLLKRALQ 182 (725)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
No 112
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.87 E-value=1.6e-08 Score=98.23 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=36.4
Q ss_pred eEEEEEecCCcC-----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 309 ERIIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 309 ~~ivI~TTN~~~-----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
+..||+|+|... .+++|+++ || ..+.+++|+.++-.+|+....+
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD 199 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC
Confidence 346899999763 57899999 99 7899999999998888887764
No 113
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.85 E-value=8.4e-09 Score=113.39 Aligned_cols=133 Identities=16% Similarity=0.226 Sum_probs=85.8
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---Cc-ceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC--------
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND-------- 280 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~-rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~-------- 280 (436)
.|+|+++.++.|.+.+.... .|+. .| ..+||+||||||||++|+++|..++..+......
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 37899999998888776432 2321 22 3599999999999999999999998443211100
Q ss_pred -------CCCCC-------------------------CCcceeecceeecccCc-ccC-C-----CCeEEEEEecCCc--
Q 013823 281 -------GASVG-------------------------SNTKLTLSGILNFIDGL-WSS-C-----GDERIIVFTTNHK-- 319 (436)
Q Consensus 281 -------~~~~~-------------------------~~~~~~~s~LL~~ldg~-~~~-~-----~~~~ivI~TTN~~-- 319 (436)
+...+ .......+.||+.||.- ... . -.+.|+|+|||.-
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~ 610 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence 00000 00112234455555521 111 1 1357899999922
Q ss_pred -----------------------CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 320 -----------------------ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 320 -----------------------~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
..+.|.|+. |+|.+|.|+..+.++...|+..++.
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred HHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 124566666 9999999999999999999988874
No 114
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.1e-08 Score=108.19 Aligned_cols=148 Identities=27% Similarity=0.375 Sum_probs=105.1
Q ss_pred HhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------------------------cCCCC----
Q 013823 232 LRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------------------------QNDGA---- 282 (436)
Q Consensus 232 l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------------------------~~~~~---- 282 (436)
+..++.++..+..++++++++||||||||++++++|++ +...... ....+
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34567788899999999999999999999999999997 2110000 00000
Q ss_pred ------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHH
Q 013823 283 ------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA 350 (436)
Q Consensus 283 ------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~ 350 (436)
..........+.++..+|++. .+. ++++..||.+..+|+++.+||||+..+.++.|+...+..+.
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 111223345778889999998 455 88888999999999999999999999999999999987777
Q ss_pred HHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHH
Q 013823 351 SNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEEL 385 (436)
Q Consensus 351 ~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l 385 (436)
........ .........++.. ..++.+++...+
T Consensus 160 ~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 160 QIHTRLMF--LGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred HHHHhcCC--CcccccHHHHHHhcCCccHHHHHHHH
Confidence 76654331 1112233344433 347777776665
No 115
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=4.3e-08 Score=99.05 Aligned_cols=129 Identities=16% Similarity=0.223 Sum_probs=86.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh-----hcc---
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM-----KDR--- 277 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~-----~~r--- 277 (436)
.||..|+.|+|+++.++.+...+. ....+..+||+||+|+|||++|..+|+.+...- ...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~------------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR------------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH------------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 689999999999999998877554 113455799999999999999999999886310 000
Q ss_pred cCCCC--------C-------------CCC--------------------------------------Ccceeecceeec
Q 013823 278 QNDGA--------S-------------VGS--------------------------------------NTKLTLSGILNF 298 (436)
Q Consensus 278 ~~~~~--------~-------------~~~--------------------------------------~~~~~~s~LL~~ 298 (436)
....+ + ... .+....+.||..
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~ 164 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKT 164 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHH
Confidence 00000 0 000 000001112333
Q ss_pred ccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 013823 299 IDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNY 353 (436)
Q Consensus 299 ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~ 353 (436)
++. .....++|+.|+.++.+.|.++. |+ .++.|+.|+.++...++.+.
T Consensus 165 LEE----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 165 LEE----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred Hhc----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 322 12346777778889999999988 88 69999999999988888763
No 116
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.82 E-value=1.2e-08 Score=102.46 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=42.2
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+|.+|+|+++.|..|...+.. +...|+||.||+|||||++|+++++.+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34799999999999988665542 2346899999999999999999988774
No 117
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.79 E-value=5.2e-08 Score=108.93 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=81.4
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc----------hhh-
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV----------EMK- 275 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------~~~- 275 (436)
.|..++.++|.++....+.+.+. ...+.+++|+||||||||++|+.+|..+.. .+.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 46789999999987666655432 123468999999999999999999998731 011
Q ss_pred ----cccCCCCCCCC----------CcceeecceeecccCcccC--------------------CCCeEEEEEecCCcC-
Q 013823 276 ----DRQNDGASVGS----------NTKLTLSGILNFIDGLWSS--------------------CGDERIIVFTTNHKE- 320 (436)
Q Consensus 276 ----~r~~~~~~~~~----------~~~~~~s~LL~~ldg~~~~--------------------~~~~~ivI~TTN~~~- 320 (436)
.........+. .....-...+-++|.+..- ..+++.+|+||+..+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY 328 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHH
Confidence 00000000000 0000000111122222110 013477888888643
Q ss_pred ----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 321 ----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 321 ----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
.+|+||.| ||. .|.++.|+.++...|++.+..
T Consensus 329 ~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 329 KKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred hhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 48999999 995 799999999999999665543
No 118
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.79 E-value=2.2e-08 Score=100.43 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=44.2
Q ss_pred CCCc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCC-CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~-~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-|+ ++.|+++.++++.+++.... .|. ..++.++|+|||||||||+|++||+.++
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4577 89999999999988776433 122 3356789999999999999999999886
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.76 E-value=2.3e-08 Score=110.04 Aligned_cols=129 Identities=20% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc---ch-------hhccc-
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS---VE-------MKDRQ- 278 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~-------~~~r~- 278 (436)
.++.++|-++....+.+.+.. ..+.++||+||||||||++|+++|...- ++ +....
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 577888888877777665441 1346789999999999999999998641 00 00000
Q ss_pred ----CCCCCCCCCc---cee------ecc---eeecccC--------------------cccCCCCeEEEEEecCCcC--
Q 013823 279 ----NDGASVGSNT---KLT------LSG---ILNFIDG--------------------LWSSCGDERIIVFTTNHKE-- 320 (436)
Q Consensus 279 ----~~~~~~~~~~---~~~------~s~---LL~~ldg--------------------~~~~~~~~~ivI~TTN~~~-- 320 (436)
......+... +.. ... ++++++. +.. ..++.+|++||.++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFS 328 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHH
Confidence 0000000000 000 000 1122221 111 13578899999765
Q ss_pred ---CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 321 ---RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 321 ---~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
..|+||.| ||+ .|.++.|+.+++..|++.+...
T Consensus 329 ~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ 364 (758)
T PRK11034 329 NIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_pred HHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 57999999 996 7999999999999999976543
No 120
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.76 E-value=2.9e-08 Score=94.90 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=72.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc-----hhhcccC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV-----EMKDRQN 279 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-----~~~~r~~ 279 (436)
..+..+||+.+-.. -.. ....+..... .+..+.++||||||||||+|++++|+++.. .+.....
T Consensus 15 ~~~~~~fd~f~~~~-n~~-a~~~l~~~~~---------~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 15 LPDDETFASFYPGD-NDS-LLAALQNALR---------QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCcCCccccccCc-cHH-HHHHHHHHHh---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 44556899976331 111 2233332221 112357999999999999999999987651 1100000
Q ss_pred CCCCC---------------CC-----CcceeecceeecccCcccCCCCeEEEEEecCCcCC---CCccccCCCcee--E
Q 013823 280 DGASV---------------GS-----NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER---IDPALLRPGRMD--V 334 (436)
Q Consensus 280 ~~~~~---------------~~-----~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~AllRpGR~d--~ 334 (436)
..... ++ .....-..|...++..... +...+++.+++.|.. +.|.|.+ |+. .
T Consensus 84 ~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~-g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~ 160 (235)
T PRK08084 84 RAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILES-GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQ 160 (235)
T ss_pred HhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHc-CCCeEEEeCCCChHHcCcccHHHHH--HHhCCc
Confidence 00000 00 0000000111222222111 111344445556555 5788988 986 8
Q ss_pred EEEcCCCCHHHHHHHHHHHh
Q 013823 335 HINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 335 ~I~~~~p~~~~r~~i~~~~l 354 (436)
.+++..|+.+++..+++...
T Consensus 161 ~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred eeeecCCCHHHHHHHHHHHH
Confidence 89999999999998887644
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.76 E-value=4.4e-08 Score=105.99 Aligned_cols=52 Identities=21% Similarity=0.445 Sum_probs=41.3
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
-.|.+|++++|.....+.+...+. .+.+..++|+||||||||++|+++++..
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 348899999999988887654332 1234679999999999999999998765
No 122
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.75 E-value=3.4e-08 Score=109.22 Aligned_cols=134 Identities=19% Similarity=0.272 Sum_probs=83.9
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC---cc-eeeEeCCCCCChhHHHHHHHHHhcchhhcccCC--------
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW---KR-GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND-------- 280 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~---~r-g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~-------- 280 (436)
.|+|+++.++.|.+.+.. .+.|... |. .+||+||||||||++|+++|..++..+......
T Consensus 455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 467777777777665542 2334322 34 489999999999999999999998432211110
Q ss_pred -------CCCCC-------------------------CCcceeecceeecccCccc--CC-----CCeEEEEEecCCcC-
Q 013823 281 -------GASVG-------------------------SNTKLTLSGILNFIDGLWS--SC-----GDERIIVFTTNHKE- 320 (436)
Q Consensus 281 -------~~~~~-------------------------~~~~~~~s~LL~~ldg~~~--~~-----~~~~ivI~TTN~~~- 320 (436)
+...+ .......+.|++.+|.-.- .. -.+.+||+|||...
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~ 606 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAS 606 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchh
Confidence 00000 0111223345555553210 00 13478999998632
Q ss_pred ------------------------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 321 ------------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 321 ------------------------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
.+.|.|+. |||.+|.|...+.++...|++..+..
T Consensus 607 ~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 607 EMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred hhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 14555655 99999999999999999999998853
No 123
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.73 E-value=2.4e-08 Score=111.82 Aligned_cols=134 Identities=20% Similarity=0.209 Sum_probs=84.0
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc----------chhhc
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS----------VEMKD 276 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----------~~~~~ 276 (436)
.|..++.++|.++....+.+.+. ...+.+++|+||||||||++|+++|..+. ..+..
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 46689999999887666655443 12346799999999999999999999873 11111
Q ss_pred ccCC-----CCCCCCCc---cee-------ecceeecccCcccCC--------------------CCeEEEEEecCCcC-
Q 013823 277 RQND-----GASVGSNT---KLT-------LSGILNFIDGLWSSC--------------------GDERIIVFTTNHKE- 320 (436)
Q Consensus 277 r~~~-----~~~~~~~~---~~~-------~s~LL~~ldg~~~~~--------------------~~~~ivI~TTN~~~- 320 (436)
.... ....+... +.. ....+-++|.+..-. .+++.+|+||+..+
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 0000 00000000 000 011122233221110 13578899988876
Q ss_pred ----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 321 ----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 321 ----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
.+|+|+.| ||+ .|.++.|+.+++..|++.....
T Consensus 320 r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 320 RQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred HHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 48999999 997 5889999999999998876544
No 124
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.73 E-value=4.3e-08 Score=101.16 Aligned_cols=134 Identities=13% Similarity=0.190 Sum_probs=74.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc-----hhhcccC------------CCC-----------------CCCC--Ccce
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV-----EMKDRQN------------DGA-----------------SVGS--NTKL 290 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~-----~~~~r~~------------~~~-----------------~~~~--~~~~ 290 (436)
.+++||||||||||+|++|+|+++.. ....... ... +.+. ....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 216 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER 216 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH
Confidence 56899999999999999999998731 0000000 000 0000 0000
Q ss_pred eecceeecccCcccCCCCeEEEEEecCCcCC---CCccccCCCcee--EEEEcCCCCHHHHHHHHHHHhcccCCCCCcHH
Q 013823 291 TLSGILNFIDGLWSSCGDERIIVFTTNHKER---IDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIKGKSHSLFG 365 (436)
Q Consensus 291 ~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~ 365 (436)
+...|+..++.+... +..+||.+++.|.. +++.+.+ ||. ..++++.|+.++|..|++..+...+ .....+
T Consensus 217 ~~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~-~~l~~e 291 (405)
T TIGR00362 217 TQEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEG-LELPDE 291 (405)
T ss_pred HHHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHH
Confidence 111222333332221 12344444445554 5678887 996 5899999999999999999887653 222333
Q ss_pred HHHhhhhcCCCCHHHHHHHH
Q 013823 366 EIEGLIQSTDVTPAEVAEEL 385 (436)
Q Consensus 366 ~i~~l~~~~~~tpaei~~~l 385 (436)
.+.-++....-+..++...+
T Consensus 292 ~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 292 VLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHHHHhcCCCHHHHHHHH
Confidence 44444544444555544433
No 125
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.73 E-value=3.4e-08 Score=99.12 Aligned_cols=108 Identities=23% Similarity=0.278 Sum_probs=68.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC----------------------------------------CCC
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA----------------------------------------SVG 285 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~----------------------------------------~~~ 285 (436)
.+.+||-||||||||++|+++|..++.++......+. +.+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 4779999999999999999999999944433222111 000
Q ss_pred CCcceeecceeecccC-------cc-cCCCCeEEEEEecC-----CcCCCCccccCCCceeEEEEcCCC-CHHHHHHHHH
Q 013823 286 SNTKLTLSGILNFIDG-------LW-SSCGDERIIVFTTN-----HKERIDPALLRPGRMDVHINMSYC-TVHGFKVLAS 351 (436)
Q Consensus 286 ~~~~~~~s~LL~~ldg-------~~-~~~~~~~ivI~TTN-----~~~~lD~AllRpGR~d~~I~~~~p-~~~~r~~i~~ 351 (436)
.....+.+.||..|+. .. -.-....++|+|+| ....|++|+++ ||...+.+++| ..++...+..
T Consensus 123 ra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 123 RAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred cCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHH
Confidence 1112233334444443 11 11123467888889 44568999999 99999999999 4455555555
Q ss_pred HHhc
Q 013823 352 NYLG 355 (436)
Q Consensus 352 ~~l~ 355 (436)
+...
T Consensus 201 ~~~~ 204 (329)
T COG0714 201 RVGG 204 (329)
T ss_pred hCcc
Confidence 5544
No 126
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.72 E-value=3.5e-08 Score=103.24 Aligned_cols=167 Identities=13% Similarity=0.193 Sum_probs=88.0
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----hhccc
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----MKDRQ 278 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----~~~r~ 278 (436)
.+.+..+|++.+..+.-+.. ...+..+...+ | ...++++||||||||||+|++++|+++... .....
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a-~~~~~~~~~~~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLA-HAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCCCcccccccCCCcHHH-HHHHHHHHhCc------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 35566689995533332222 22222222211 2 122569999999999999999999987411 00000
Q ss_pred ------------CCCC-----------------CCC--CCcceeecceeecccCcccCCCCeEEEEEecCCcCC---CCc
Q 013823 279 ------------NDGA-----------------SVG--SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER---IDP 324 (436)
Q Consensus 279 ------------~~~~-----------------~~~--~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~ 324 (436)
.... +.+ .....+...|+..++.+... ...+||.++..|.. +++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~ 263 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEE 263 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHH
Confidence 0000 000 00000112233333333322 12344444445544 678
Q ss_pred cccCCCcee--EEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHH
Q 013823 325 ALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAE 383 (436)
Q Consensus 325 AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~ 383 (436)
.+.. ||. ..++++.|+.++|..|++......+ .....+.+.-++....-+..++..
T Consensus 264 ~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 264 RLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEG-IDLPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHcCcCCCHHHHHH
Confidence 8888 995 6899999999999999999886542 222333344444444444444433
No 127
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.70 E-value=4e-08 Score=97.47 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=36.4
Q ss_pred eEEEEEecCCcC------------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823 309 ERIIVFTTNHKE------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 309 ~~ivI~TTN~~~------------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l 354 (436)
...||+|+|..+ .+++|++. ||-..+.++||+.+.-..|+....
T Consensus 178 ~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 178 AFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 356899999865 36889999 999899999999999888877654
No 128
>PRK06620 hypothetical protein; Validated
Probab=98.69 E-value=8e-08 Score=90.61 Aligned_cols=139 Identities=14% Similarity=0.165 Sum_probs=75.3
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCC-cceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAW-KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV 284 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~-~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~ 284 (436)
.++-+|++++..+.-.. ....+..... .++..+ .+.++||||||||||+|++++|+..+..+..........
T Consensus 10 ~~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~ 82 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEI 82 (214)
T ss_pred CCCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhH
Confidence 34458999765543222 2222222211 122222 367999999999999999999998874332211000000
Q ss_pred -C--------CCcceeecceeecccCcccCCCCeEEEEEecCCcCC--CCccccCCCcee--EEEEcCCCCHHHHHHHHH
Q 013823 285 -G--------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER--IDPALLRPGRMD--VHINMSYCTVHGFKVLAS 351 (436)
Q Consensus 285 -~--------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~--lD~AllRpGR~d--~~I~~~~p~~~~r~~i~~ 351 (436)
. +.....-..|...++.+... +..++|.++..|.. + |+|+. |+. ..+++..|+.+.+..+++
T Consensus 83 ~~~~d~lliDdi~~~~~~~lf~l~N~~~e~--g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 83 LEKYNAFIIEDIENWQEPALLHIFNIINEK--QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred HhcCCEEEEeccccchHHHHHHHHHHHHhc--CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHH
Confidence 0 00000000111111222222 23556665555554 5 78887 885 478999999999999988
Q ss_pred HHhcc
Q 013823 352 NYLGI 356 (436)
Q Consensus 352 ~~l~~ 356 (436)
.....
T Consensus 158 k~~~~ 162 (214)
T PRK06620 158 KHFSI 162 (214)
T ss_pred HHHHH
Confidence 77653
No 129
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.69 E-value=7.1e-08 Score=96.81 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=36.8
Q ss_pred eEEEEEecCCcC-CCCccccCCCceeEEEEcCCCCH-HHHHHHHHHHhc
Q 013823 309 ERIIVFTTNHKE-RIDPALLRPGRMDVHINMSYCTV-HGFKVLASNYLG 355 (436)
Q Consensus 309 ~~ivI~TTN~~~-~lD~AllRpGR~d~~I~~~~p~~-~~r~~i~~~~l~ 355 (436)
..++|+|+|..+ .++++++. ||..+|.+++|.. +++..|+++...
T Consensus 174 r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 174 RFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred CEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhhh
Confidence 467778888555 69999999 9999999999987 778888887543
No 130
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.69 E-value=1.1e-07 Score=97.97 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=44.9
Q ss_pred CCcc-cccChhHHHHHHHHHHHHHhhHHHHHH--hCC-CCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 210 TFDT-LAMDPELKQMILDDLDRFLRRKEFYRR--VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 210 ~~~~-i~g~~~~k~~i~~~l~~~l~~~~~~~~--~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
.++. |+|+++.|+.|...+....+.-..... -.. ....++||+||||||||++|+++|..++.++
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 4654 899999999997766543332211000 011 1346899999999999999999999888443
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.68 E-value=2.5e-08 Score=111.95 Aligned_cols=134 Identities=21% Similarity=0.213 Sum_probs=82.0
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc----------chhhc
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS----------VEMKD 276 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----------~~~~~ 276 (436)
.|..++.++|.++....+.+.+. ...+..++|+||||||||++++++|..+. ..+..
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 46689999999887666655443 12346789999999999999999999862 11110
Q ss_pred ccC-----CCCCCCCCc---cee-------ecceeecccCcccC--------------------CCCeEEEEEecCCcC-
Q 013823 277 RQN-----DGASVGSNT---KLT-------LSGILNFIDGLWSS--------------------CGDERIIVFTTNHKE- 320 (436)
Q Consensus 277 r~~-----~~~~~~~~~---~~~-------~s~LL~~ldg~~~~--------------------~~~~~ivI~TTN~~~- 320 (436)
.+. .....+... +.. -...+-++|.+..- ...++.+|++||..+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 000 000000000 000 00112222222100 013477888888664
Q ss_pred ----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 321 ----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 321 ----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
.+|+|+.| ||. .|.++.|+.+++..|++.+...
T Consensus 315 r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 315 RKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred HHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHH
Confidence 57999999 996 5899999999999999876544
No 132
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.65 E-value=1.3e-07 Score=97.33 Aligned_cols=46 Identities=30% Similarity=0.522 Sum_probs=33.8
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++++.+.++..+.+...+. .++.++|+||||||||++|+++|..+.
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555565555555543332 247899999999999999999999875
No 133
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.65 E-value=7.2e-08 Score=95.14 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=77.7
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch---hhcccCCC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE---MKDRQNDG 281 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~r~~~~ 281 (436)
.-.|.+++|.+|++++..+ ...+...+.+. ---+++|+||||||||+||+.||+..... +...+...
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~---------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN---------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHcC---------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 3457899999998877654 23233222211 12469999999999999999999877632 22222221
Q ss_pred CCCC-------------CCcceeecceeecccCcccCC---------CCeEEEEEe-cCC-cCCCCccccCCCceeEEEE
Q 013823 282 ASVG-------------SNTKLTLSGILNFIDGLWSSC---------GDERIIVFT-TNH-KERIDPALLRPGRMDVHIN 337 (436)
Q Consensus 282 ~~~~-------------~~~~~~~s~LL~~ldg~~~~~---------~~~~ivI~T-TN~-~~~lD~AllRpGR~d~~I~ 337 (436)
.... ...++..--|+.++-.+.... +..+++|++ |-. .-.|..||+. |+ .++.
T Consensus 201 a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlS--RC-~Vfv 277 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLS--RC-RVFV 277 (554)
T ss_pred cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHh--cc-ceeE
Confidence 1100 011111111222222221111 123666664 434 4479999999 88 4555
Q ss_pred cCCCCHHHHHHHHHHHh
Q 013823 338 MSYCTVHGFKVLASNYL 354 (436)
Q Consensus 338 ~~~p~~~~r~~i~~~~l 354 (436)
+.....+....|+.+-+
T Consensus 278 LekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 278 LEKLPVNAVVTILMRAI 294 (554)
T ss_pred eccCCHHHHHHHHHHHH
Confidence 66677778777877744
No 134
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.63 E-value=1.7e-07 Score=96.21 Aligned_cols=64 Identities=27% Similarity=0.423 Sum_probs=42.6
Q ss_pred CCcc-cccChhHHHHHHHHHHHHHhhHHHH-HH---hCCCC-cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 210 TFDT-LAMDPELKQMILDDLDRFLRRKEFY-RR---VGKAW-KRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 210 ~~~~-i~g~~~~k~~i~~~l~~~l~~~~~~-~~---~g~~~-~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.++. |+|+++.|+.+...+....+.-... .. -++.. +.++||+||||||||++|+++|..++.+
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~p 143 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVP 143 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 3555 6899999998877664333221100 00 01111 3579999999999999999999998733
No 135
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.62 E-value=1.9e-08 Score=87.78 Aligned_cols=24 Identities=50% Similarity=0.830 Sum_probs=22.9
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++||+||||||||++|+.+|..++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999999998
No 136
>PRK08727 hypothetical protein; Validated
Probab=98.61 E-value=1.8e-07 Score=89.37 Aligned_cols=135 Identities=17% Similarity=0.276 Sum_probs=74.2
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch--------hh
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE--------MK 275 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~--------~~ 275 (436)
......+|++.++.+.- . ...+..... | .....++|+||+|||||.|++|+|+++.-. ..
T Consensus 11 ~~~~~~~f~~f~~~~~n--~-~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDG--L-LAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CCCCcCChhhccCCcHH--H-HHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 34555689997765542 1 111211111 1 123459999999999999999998875410 00
Q ss_pred cccC---------CCC------CCCC--CcceeecceeecccCcccCCCCeEEEEEecC-CcCCC---CccccCCCce--
Q 013823 276 DRQN---------DGA------SVGS--NTKLTLSGILNFIDGLWSSCGDERIIVFTTN-HKERI---DPALLRPGRM-- 332 (436)
Q Consensus 276 ~r~~---------~~~------~~~~--~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN-~~~~l---D~AllRpGR~-- 332 (436)
.... ... +.+. ........+++.++..... +.-+|+|+| .|..+ +|++.+ ||
T Consensus 79 ~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~---~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~ 153 (233)
T PRK08727 79 AAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAA---GITLLYTARQMPDGLALVLPDLRS--RLAQ 153 (233)
T ss_pred HhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHc---CCeEEEECCCChhhhhhhhHHHHH--HHhc
Confidence 0000 000 0000 0000111222333322211 233556555 66655 689988 86
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhc
Q 013823 333 DVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 333 d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
..+++++.|+.+++..++++...
T Consensus 154 ~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 154 CIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred CceEEecCCCHHHHHHHHHHHHH
Confidence 57889999999999999997543
No 137
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.61 E-value=3.2e-08 Score=91.87 Aligned_cols=46 Identities=33% Similarity=0.517 Sum_probs=36.1
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|.+|+|++..|..+.-... | ..++||+||||||||++|+++...|.
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 8899999999998854333 3 36899999999999999999998776
No 138
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=3e-07 Score=91.68 Aligned_cols=152 Identities=13% Similarity=0.175 Sum_probs=94.5
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh---------------
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM--------------- 274 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~--------------- 274 (436)
.|++|+|++++++.+...+.. ...+.++||+||+|+||+++|.++|+.+...-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 489999999999998876651 13356899999999999999999999875221
Q ss_pred ---hcccC-----C-------------------CC-----------------CC----------CCCcceeecceeeccc
Q 013823 275 ---KDRQN-----D-------------------GA-----------------SV----------GSNTKLTLSGILNFID 300 (436)
Q Consensus 275 ---~~r~~-----~-------------------~~-----------------~~----------~~~~~~~~s~LL~~ld 300 (436)
.-... . .. .. +.......+.||..|+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE 149 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE 149 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 00000 0 00 00 0000011122444443
Q ss_pred CcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHH
Q 013823 301 GLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAE 380 (436)
Q Consensus 301 g~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpae 380 (436)
.- + ..++|++|+.++.|-|.+++ |+ ..|.|+.++.++...++....... ....+...++..+.-+|..
T Consensus 150 EP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~----~~~~~~~~l~~~a~Gs~~~ 217 (314)
T PRK07399 150 EP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE----ILNINFPELLALAQGSPGA 217 (314)
T ss_pred CC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc----cchhHHHHHHHHcCCCHHH
Confidence 32 2 35778888899999999999 88 789999999999887777653221 1111233444444555554
Q ss_pred HHHHH
Q 013823 381 VAEEL 385 (436)
Q Consensus 381 i~~~l 385 (436)
..+.+
T Consensus 218 al~~l 222 (314)
T PRK07399 218 AIANI 222 (314)
T ss_pred HHHHH
Confidence 44433
No 139
>PRK05642 DNA replication initiation factor; Validated
Probab=98.57 E-value=2e-07 Score=89.15 Aligned_cols=139 Identities=15% Similarity=0.163 Sum_probs=74.6
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc-----------
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV----------- 272 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------- 272 (436)
...+..+|++.+... .....+.+..+... .+....+.++||||+|||||.|++|+|+++..
T Consensus 11 ~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~------~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 11 RLRDDATFANYYPGA--NAAALGYVERLCEA------DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCCcccccccCcCC--hHHHHHHHHHHhhc------cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 345556899976332 12233333322211 11112367899999999999999999987531
Q ss_pred hhhc-------ccC-CCC----CCC--CCcceeecceeecccCcccCCCCeEEEEEecCCcCCC---CccccCCCce--e
Q 013823 273 EMKD-------RQN-DGA----SVG--SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI---DPALLRPGRM--D 333 (436)
Q Consensus 273 ~~~~-------r~~-~~~----~~~--~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l---D~AllRpGR~--d 333 (436)
++.. .-. .+. +.+ .........|...++.+... +..+||.++..|..+ .|.+.+ || .
T Consensus 83 ~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~--g~~ilits~~~p~~l~~~~~~L~S--Rl~~g 158 (234)
T PRK05642 83 ELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS--GRRLLLAASKSPRELPIKLPDLKS--RLTLA 158 (234)
T ss_pred HHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc--CCEEEEeCCCCHHHcCccCccHHH--HHhcC
Confidence 0000 000 000 000 00011112344444444322 224555554455433 688888 88 4
Q ss_pred EEEEcCCCCHHHHHHHHHHHh
Q 013823 334 VHINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 334 ~~I~~~~p~~~~r~~i~~~~l 354 (436)
..+.+..|+.+++..+++...
T Consensus 159 l~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 159 LVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred eeeecCCCCHHHHHHHHHHHH
Confidence 778889999999999988543
No 140
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.7e-07 Score=99.24 Aligned_cols=135 Identities=22% Similarity=0.310 Sum_probs=88.9
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCc----ceeeEeCCCCCChhHHHHHHHHHhc--------chhh---c
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK----RGYLLYGPPGTGKSSLIAAMANYLS--------VEMK---D 276 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~----rg~LL~GPpGtGKT~la~aiA~~l~--------~~~~---~ 276 (436)
..|+|+++..+.|.+.+. ..+.|+..| .++||.||.|+|||.||+++|..+. +++. .
T Consensus 491 ~rViGQd~AV~avs~aIr--------raRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIR--------RARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHH--------HHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 358899998888888776 344564332 3588999999999999999999998 1110 0
Q ss_pred -----c--cCCCCCC-------------------------CCCcceeecceeecccCcccCC--C-----CeEEEEEecC
Q 013823 277 -----R--QNDGASV-------------------------GSNTKLTLSGILNFIDGLWSSC--G-----DERIIVFTTN 317 (436)
Q Consensus 277 -----r--~~~~~~~-------------------------~~~~~~~~s~LL~~ldg~~~~~--~-----~~~ivI~TTN 317 (436)
+ ..++.+. .......++-||+.+|.-.-.. | .+.|||||||
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 0 1111110 1112234566777776432211 1 2469999999
Q ss_pred CcC----------------------------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 318 HKE----------------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 318 ~~~----------------------------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
-=. ...|+|+. |+|.+|.|...+.+....|+...+..
T Consensus 643 ~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 643 AGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred cchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 310 12345555 99999999999999999999998854
No 141
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.55 E-value=6.2e-07 Score=90.96 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=83.4
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch---------hhccc----
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE---------MKDRQ---- 278 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---------~~~r~---- 278 (436)
+.++|-++..+.|...+...+. | ..+.+++++||||||||++++++++.+.-. .....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 5788999999988887764432 1 234579999999999999999999865310 00000
Q ss_pred -----------------CCCCCCCC---------------CcceeecceeecccCcc-----------------cCCCCe
Q 013823 279 -----------------NDGASVGS---------------NTKLTLSGILNFIDGLW-----------------SSCGDE 309 (436)
Q Consensus 279 -----------------~~~~~~~~---------------~~~~~~s~LL~~ldg~~-----------------~~~~~~ 309 (436)
........ ......--+++++|.+. ...+..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 00000000 00000111233333331 011245
Q ss_pred EEEEEecCCcC---CCCccccCCCcee-EEEEcCCCCHHHHHHHHHHHhc
Q 013823 310 RIIVFTTNHKE---RIDPALLRPGRMD-VHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 310 ~ivI~TTN~~~---~lD~AllRpGR~d-~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
+.+|++||.++ .+++.+.+ ||. ..|+|+.++.++...++.+.+.
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 78899999876 57888877 774 6799999999999999998875
No 142
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.55 E-value=1.6e-07 Score=86.44 Aligned_cols=102 Identities=17% Similarity=0.270 Sum_probs=66.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcch------------------------hh--cccCCCCC---------------
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE------------------------MK--DRQNDGAS--------------- 283 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~------------------------~~--~r~~~~~~--------------- 283 (436)
.+..+|||||||+|||++|+++|+.+... +. ........
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45779999999999999999999987521 00 00000000
Q ss_pred ------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHH
Q 013823 284 ------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLAS 351 (436)
Q Consensus 284 ------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~ 351 (436)
.+.......+.||..|+.. .+..++|++||.+..+++++.+ |+ ..++|+.|+.++...++.
T Consensus 93 ~~~~~kviiide~~~l~~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~ 165 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLI 165 (188)
T ss_pred ccCCeEEEEEechhhhCHHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHH
Confidence 0000111223344455442 2347788888888999999998 87 589999999998777766
Q ss_pred HH
Q 013823 352 NY 353 (436)
Q Consensus 352 ~~ 353 (436)
..
T Consensus 166 ~~ 167 (188)
T TIGR00678 166 RQ 167 (188)
T ss_pred Hc
Confidence 54
No 143
>PHA02244 ATPase-like protein
Probab=98.54 E-value=1.9e-07 Score=93.88 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=26.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
+..+||+||||||||++|++||..++.++.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv 148 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFY 148 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356999999999999999999999985443
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.54 E-value=3e-07 Score=95.85 Aligned_cols=46 Identities=15% Similarity=0.331 Sum_probs=36.1
Q ss_pred EEEEEecCC-cC---CCCccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccc
Q 013823 310 RIIVFTTNH-KE---RIDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 310 ~ivI~TTN~-~~---~lD~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
..+|+|+|. |. .+++.+.+ ||. ..+.++.|+.+++..++++.....
T Consensus 236 k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 236 KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 356666664 43 56788988 995 899999999999999999887654
No 145
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.54 E-value=5.4e-07 Score=101.10 Aligned_cols=136 Identities=18% Similarity=0.271 Sum_probs=84.1
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---Cc-ceeeEeCCCCCChhHHHHHHHHHhc---chhh--------
Q 013823 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYLS---VEMK-------- 275 (436)
Q Consensus 211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~-rg~LL~GPpGtGKT~la~aiA~~l~---~~~~-------- 275 (436)
+..|+|++...+.|...+.... .|.. .| ..+||+||||||||++|++||+.+. ..+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 5578899999888888776432 2222 12 3589999999999999999999874 0010
Q ss_pred cc------c-CCCCCCC-------------------------CCcceeecceeecccCcc-cC-C-----CCeEEEEEec
Q 013823 276 DR------Q-NDGASVG-------------------------SNTKLTLSGILNFIDGLW-SS-C-----GDERIIVFTT 316 (436)
Q Consensus 276 ~r------~-~~~~~~~-------------------------~~~~~~~s~LL~~ldg~~-~~-~-----~~~~ivI~TT 316 (436)
.. - ..+...+ .......+.|++.+|.-. .. . -.+.+||+||
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 00 0 0000000 001112233444443211 10 0 1235899999
Q ss_pred CCc-------------------------CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 317 NHK-------------------------ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 317 N~~-------------------------~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
|.. ..+.|+|+. |+|.+|.|.+++.+....|+..++..
T Consensus 719 N~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 719 NLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred CcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 972 124467777 99999999999999999999988854
No 146
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.6e-07 Score=94.38 Aligned_cols=124 Identities=18% Similarity=0.269 Sum_probs=81.2
Q ss_pred CCccccc-ChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh-------------
Q 013823 210 TFDTLAM-DPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK------------- 275 (436)
Q Consensus 210 ~~~~i~g-~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~------------- 275 (436)
.|++|.| ++.+++.+...+. ....+..+|||||+|+||+++|+++|+.+...-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778888 7778887766543 1235678999999999999999999998752110
Q ss_pred -----------cc--cCCCC-----------------C----------CCCCcceeecceeecccCcccCCCCeEEEEEe
Q 013823 276 -----------DR--QNDGA-----------------S----------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFT 315 (436)
Q Consensus 276 -----------~r--~~~~~-----------------~----------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~T 315 (436)
.. ..... . .+.......+.||..|+.- ++..++|++
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP----p~~~~~Il~ 146 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP----SGGTTAILL 146 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC----CCCceEEEE
Confidence 00 00000 0 0001111223355555443 345788889
Q ss_pred cCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHH
Q 013823 316 TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASN 352 (436)
Q Consensus 316 TN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~ 352 (436)
|+.+..|-|++++ |+ ..++|+.|+.++....+..
T Consensus 147 t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 147 TENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 9999999999998 88 6889999999886555543
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.52 E-value=1.6e-07 Score=97.81 Aligned_cols=166 Identities=15% Similarity=0.225 Sum_probs=84.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE----------- 273 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----------- 273 (436)
+.+..+|++.+..+.-.... ..+..+...+ | +..+++||||||||||.|++|+|+++.-.
T Consensus 98 l~~~~tFdnFv~g~~n~~a~-~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAY-HAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchHHHH-HHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 45556899976433332222 2222222211 1 23569999999999999999999986310
Q ss_pred --hh----cc-cCCC-----------C------CCCC--CcceeecceeecccCcccCCCCeEEEEEecCCcCC---CCc
Q 013823 274 --MK----DR-QNDG-----------A------SVGS--NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER---IDP 324 (436)
Q Consensus 274 --~~----~r-~~~~-----------~------~~~~--~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~ 324 (436)
+. .. .... . +.+. ....+...|+..++.+... ...+||.+.+.|.. +++
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--CCeEEEECCCCHHHHHHHHH
Confidence 00 00 0000 0 0000 0000011222223333222 12344444456655 456
Q ss_pred cccCCCce--eEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHH
Q 013823 325 ALLRPGRM--DVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEE 384 (436)
Q Consensus 325 AllRpGR~--d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~ 384 (436)
.+.+ || ...+.+..|+.+.|..|+++.....+ .....+.+.-++....-+..++...
T Consensus 247 rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~-~~l~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 247 RLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHhccccCHHHHHHH
Confidence 7777 77 46789999999999999999876542 1222233333444433344444433
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.52 E-value=1.1e-07 Score=106.39 Aligned_cols=130 Identities=19% Similarity=0.198 Sum_probs=80.4
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc----------chhhccc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS----------VEMKDRQ 278 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----------~~~~~r~ 278 (436)
..++.++|.++..+.+.+.+. ...+++++|+||||||||++|+++|..+. ..+...+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 468889999888888877554 23457899999999999999999999874 1111110
Q ss_pred C-----CCCCCCCCc---cee------ecceeecccCcc---cC-----------------CCCeEEEEEecCCcC----
Q 013823 279 N-----DGASVGSNT---KLT------LSGILNFIDGLW---SS-----------------CGDERIIVFTTNHKE---- 320 (436)
Q Consensus 279 ~-----~~~~~~~~~---~~~------~s~LL~~ldg~~---~~-----------------~~~~~ivI~TTN~~~---- 320 (436)
. .....+... +.. ....+-++|.+. .. ..+++.+|++|+..+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKH 322 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHH
Confidence 0 000000000 000 011222333331 10 012467888888654
Q ss_pred -CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823 321 -RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 321 -~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l 354 (436)
..|+++.| ||. .|.++.|+.++...|++...
T Consensus 323 ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 323 IEKDPALER--RFQ-PVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHH
Confidence 57999999 996 57999999999888876543
No 149
>PRK09087 hypothetical protein; Validated
Probab=98.52 E-value=3.6e-07 Score=86.90 Aligned_cols=107 Identities=12% Similarity=0.178 Sum_probs=64.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC------CC-----C--CCcceeecceeecccCcccCCCCeEEEE
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA------SV-----G--SNTKLTLSGILNFIDGLWSSCGDERIIV 313 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~------~~-----~--~~~~~~~s~LL~~ldg~~~~~~~~~ivI 313 (436)
..++|+||+|+|||+|++++|...+........... .. + ......-..|...++.+... +..+||
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~--g~~ili 122 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQA--GTSLLM 122 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhC--CCeEEE
Confidence 348999999999999999999877643222210000 00 0 00000112244444444332 123444
Q ss_pred EecCCcCC---CCccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccc
Q 013823 314 FTTNHKER---IDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 314 ~TTN~~~~---lD~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.++..|.. ..|.++. |+. ..+++..|+.+.+..++++.+...
T Consensus 123 ts~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred ECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 44444442 3578888 885 889999999999999999988654
No 150
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.50 E-value=2.2e-08 Score=85.94 Aligned_cols=83 Identities=29% Similarity=0.346 Sum_probs=43.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC----------------------------------CCCCCcceeec
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA----------------------------------SVGSNTKLTLS 293 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~----------------------------------~~~~~~~~~~s 293 (436)
.+||.|+||+|||++|+++|..++..+...+..+. +.+....++.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappktQs 80 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKTQS 80 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHHHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHHHH
Confidence 37999999999999999999999955433222111 11112233445
Q ss_pred ceeeccc-------CcccCCCCeEEEEEecCCcC-----CCCccccCCCce
Q 013823 294 GILNFID-------GLWSSCGDERIIVFTTNHKE-----RIDPALLRPGRM 332 (436)
Q Consensus 294 ~LL~~ld-------g~~~~~~~~~ivI~TTN~~~-----~lD~AllRpGR~ 332 (436)
.||..|. |..-...+..+||+|-|..+ .|++|++. ||
T Consensus 81 AlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 81 ALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp HHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred HHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 5555553 22223345678999999877 68888887 87
No 151
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.50 E-value=1.8e-07 Score=80.46 Aligned_cols=26 Identities=58% Similarity=0.922 Sum_probs=23.9
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..++++++||||||||++++.+++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999988
No 152
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1e-06 Score=88.29 Aligned_cols=102 Identities=16% Similarity=0.250 Sum_probs=67.2
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcchhhc------------------------ccCCC----CC-------------
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD------------------------RQNDG----AS------------- 283 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~------------------------r~~~~----~~------------- 283 (436)
.+.++||+||+|+||+++|.++|+.+...-.. ..... ..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 45689999999999999999999988632100 00000 00
Q ss_pred --------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHH
Q 013823 284 --------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVL 349 (436)
Q Consensus 284 --------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i 349 (436)
.+.......+.||+.|+.- .+..++|++|+.++.|.|.+++ |+ ..+.|+.|+.++....
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS--RC-QQQACPLPSNEESLQW 173 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHH
Confidence 0000111222344444332 3458899999999999999999 99 4589999999887666
Q ss_pred HHHH
Q 013823 350 ASNY 353 (436)
Q Consensus 350 ~~~~ 353 (436)
+...
T Consensus 174 L~~~ 177 (328)
T PRK05707 174 LQQA 177 (328)
T ss_pred HHHh
Confidence 6543
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.46 E-value=9.8e-07 Score=98.85 Aligned_cols=52 Identities=29% Similarity=0.461 Sum_probs=38.8
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---Ccc-eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKR-GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~r-g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.|+|+++.++.|...+... +.|+. .|. .+||+||||||||++|+++|..+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 45789888888887766532 23322 122 489999999999999999999873
No 154
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.45 E-value=5e-07 Score=93.83 Aligned_cols=106 Identities=19% Similarity=0.277 Sum_probs=61.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcch--hh---ccc--C--------------CCC------------------CCCC
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVE--MK---DRQ--N--------------DGA------------------SVGS 286 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~---~r~--~--------------~~~------------------~~~~ 286 (436)
...+||+||||||||++|+++|...+.. +. .+. . .+. +...
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 4679999999999999999999876410 00 000 0 000 0011
Q ss_pred Ccceeecceeeccc-CcccCCC-----CeEEEEEecCCcCC---CCccccCCCceeEEEEcCCCC-HHHHHHHHHHH
Q 013823 287 NTKLTLSGILNFID-GLWSSCG-----DERIIVFTTNHKER---IDPALLRPGRMDVHINMSYCT-VHGFKVLASNY 353 (436)
Q Consensus 287 ~~~~~~s~LL~~ld-g~~~~~~-----~~~ivI~TTN~~~~---lD~AllRpGR~d~~I~~~~p~-~~~r~~i~~~~ 353 (436)
.+..+.+.||..|. +.....+ +.+++++|||.... ..+|+.. ||-..|.+|+|+ .++...|+...
T Consensus 119 asp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 119 AGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 12223333444442 1111111 22577778884321 2348999 999999999997 46667777664
No 155
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=6.3e-07 Score=95.68 Aligned_cols=106 Identities=13% Similarity=0.249 Sum_probs=64.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc-----h--------hh----cc-cCCC----------C--------CCCCCcce
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV-----E--------MK----DR-QNDG----------A--------SVGSNTKL 290 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~-----~--------~~----~r-~~~~----------~--------~~~~~~~~ 290 (436)
..++|||++|||||.|++|||+++.. . +. .. .... . ..-.....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 45999999999999999999998731 0 00 00 0000 0 00000001
Q ss_pred eecceeecccCcccCCCCeEEEEEecCCc----CCCCccccCCCce--eEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 291 TLSGILNFIDGLWSSCGDERIIVFTTNHK----ERIDPALLRPGRM--DVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 291 ~~s~LL~~ldg~~~~~~~~~ivI~TTN~~----~~lD~AllRpGR~--d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
+-..|++.++.+... +.-||+|+|.+ ..+++.|.+ || ...+++..|+.+.|..|++......
T Consensus 395 tqeeLF~l~N~l~e~---gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 395 TQEEFFHTFNTLHNA---NKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred HHHHHHHHHHHHHhc---CCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 112233444444322 13355677754 357788888 88 5677999999999999999987665
No 156
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.44 E-value=9.3e-07 Score=99.38 Aligned_cols=134 Identities=22% Similarity=0.317 Sum_probs=81.9
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CcceeeEeCCCCCChhHHHHHHHHHhcc--------hhhc---
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLSV--------EMKD--- 276 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rg~LL~GPpGtGKT~la~aiA~~l~~--------~~~~--- 276 (436)
..|+|++...+.|.+.+.... .|+. +...+||+||||||||++|++||..+.- +...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 458899998888888776432 2222 2235899999999999999999998741 1100
Q ss_pred -----c--cCCCCCCC-------------------------CCcceeecceeecccCcc-c-CC-----CCeEEEEEecC
Q 013823 277 -----R--QNDGASVG-------------------------SNTKLTLSGILNFIDGLW-S-SC-----GDERIIVFTTN 317 (436)
Q Consensus 277 -----r--~~~~~~~~-------------------------~~~~~~~s~LL~~ldg~~-~-~~-----~~~~ivI~TTN 317 (436)
+ ...+...+ .......+.||+.+|.-. . .. -.+.+||+|||
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 0 00000000 001112233444443211 1 00 13478999999
Q ss_pred CcCC-------------------------CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 318 HKER-------------------------IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 318 ~~~~-------------------------lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
.... +.|.|+- |+|.+|.|.+++.+....|+...+.
T Consensus 717 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 717 LGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred cchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 7221 2345555 9999999999999999999988875
No 157
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.43 E-value=6.9e-07 Score=100.04 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=40.0
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRG-YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rg-~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..|+|+++..+.|.+.+.... .|+ ..|.| +||+||||||||.+|+++|..+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899998888888776432 232 23444 79999999999999999999884
No 158
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.42 E-value=3.6e-06 Score=92.04 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=37.2
Q ss_pred CeEEEEEecCC---cCCCCccccCCCceeE-EEEcCCCCHHHHHHHHHHHhcc
Q 013823 308 DERIIVFTTNH---KERIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 308 ~~~ivI~TTN~---~~~lD~AllRpGR~d~-~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
..++||+++|. ++.|+|.+.. ||.. .|.|++++.++...|+..-+..
T Consensus 901 SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 901 SKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred CeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHh
Confidence 45788899985 5677888877 7653 4889999999999999887753
No 159
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.38 E-value=4.7e-06 Score=85.43 Aligned_cols=51 Identities=31% Similarity=0.462 Sum_probs=37.7
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.+.+++-++..++|...+...+. | ..+..+++|||||||||++++.+++++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35577777777777666653332 1 234568999999999999999999877
No 160
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=8.4e-06 Score=88.06 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=51.8
Q ss_pred CCccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 198 ~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
..|. ..-.|.++++|+++++..+.|...+.... ++....+.++|+||||||||++++++|++++..+
T Consensus 72 ~pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 72 EPWV--EKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred CchH--HHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 3564 47789999999999999888777655321 1223445699999999999999999999998544
No 161
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.33 E-value=1.2e-06 Score=95.25 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=38.0
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
+|..|+|++.+|..+.-.+.. +...|+||+||||||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 588999999988776443321 112579999999999999999999988
No 162
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.33 E-value=1.1e-06 Score=83.11 Aligned_cols=107 Identities=17% Similarity=0.291 Sum_probs=60.0
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch-------------hhc-----c-c-----------CCCC----CCC--CCcce
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE-------------MKD-----R-Q-----------NDGA----SVG--SNTKL 290 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~-------------~~~-----r-~-----------~~~~----~~~--~~~~~ 290 (436)
..++||||+|+|||.|.+|+++++... +.. . . ..+. +.+ .....
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~ 114 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQR 114 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchH
Confidence 458999999999999999999986410 000 0 0 0000 000 01111
Q ss_pred eecceeecccCcccCCCCeEEEEEecCCcCCC---CccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccc
Q 013823 291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERI---DPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 291 ~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l---D~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
+...|...++.+... +..+|+.+...|..+ ++.|.. ||. ..+++..|+.+.|..++.......
T Consensus 115 ~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~ 182 (219)
T PF00308_consen 115 TQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKER 182 (219)
T ss_dssp HHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHh
Confidence 223344444444433 224555554566654 566666 774 588999999999999999988765
No 163
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.32 E-value=3.4e-06 Score=89.87 Aligned_cols=142 Identities=20% Similarity=0.246 Sum_probs=87.5
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHh---h--------------HHHHH----HhCCCCcceeeEeCCCCCChhH
Q 013823 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLR---R--------------KEFYR----RVGKAWKRGYLLYGPPGTGKSS 261 (436)
Q Consensus 203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~---~--------------~~~~~----~~g~~~~rg~LL~GPpGtGKT~ 261 (436)
|..-.|..|.++.+++.+-..+..++..+-. + ++.+. ..+.|.++-+||+||||-||||
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 4567789999999999998888777764311 1 01111 1235666779999999999999
Q ss_pred HHHHHHHHhcchhhcccCCCCCCC-----------------CCcceeecceeecccCcc--------------------c
Q 013823 262 LIAAMANYLSVEMKDRQNDGASVG-----------------SNTKLTLSGILNFIDGLW--------------------S 304 (436)
Q Consensus 262 la~aiA~~l~~~~~~r~~~~~~~~-----------------~~~~~~~s~LL~~ldg~~--------------------~ 304 (436)
||+.||...|....+...++.... +...+=..-++.+|||-. .
T Consensus 342 LAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gk 421 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGK 421 (877)
T ss_pred HHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcC
Confidence 999999999955544433322100 000111122455566532 0
Q ss_pred CCCC------------eEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHH
Q 013823 305 SCGD------------ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGF 346 (436)
Q Consensus 305 ~~~~------------~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r 346 (436)
..+. -+-||+.+|. ..-|||.----+-..|.|+.|.....
T Consensus 422 q~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~L 473 (877)
T KOG1969|consen 422 QAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRL 473 (877)
T ss_pred cccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHH
Confidence 0000 1468888885 45677741125788999999888653
No 164
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=4.8e-06 Score=83.79 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=37.0
Q ss_pred CCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHH
Q 013823 307 GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASN 352 (436)
Q Consensus 307 ~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~ 352 (436)
++.+++|++|++++.|.|.+++ |+ ..|.|+.|+.++....+..
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 3558899999999999999999 99 7899999999887766654
No 165
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.30 E-value=1.5e-05 Score=78.88 Aligned_cols=53 Identities=34% Similarity=0.475 Sum_probs=40.3
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
=|-++|+.+.++..--.+. .+ +-|.-..||+|+.||||||||.||-+||.+||
T Consensus 38 ~dG~VGQ~~AReAaGvIv~-mi-------k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVK-MI-------KQGKMAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred CCcccchHHHHHhhhHHHH-HH-------HhCcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3568899888876422222 22 22445679999999999999999999999999
No 166
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.29 E-value=1.4e-06 Score=92.62 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=37.0
Q ss_pred eEEEEEecCCcC-------------CCCccccCCCceeEEEE-cCCCCHHHHHHHHHHHhcc
Q 013823 309 ERIIVFTTNHKE-------------RIDPALLRPGRMDVHIN-MSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 309 ~~ivI~TTN~~~-------------~lD~AllRpGR~d~~I~-~~~p~~~~r~~i~~~~l~~ 356 (436)
..-||+|+|..+ .|++++++ |||.... .++|+.+....|+++.+..
T Consensus 343 ~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 343 RCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 356889999653 59999999 9998654 5899999999999987653
No 167
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.28 E-value=1.2e-06 Score=86.98 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=60.0
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc------------------------hhhcccCCCCCC-----------------C
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV------------------------EMKDRQNDGASV-----------------G 285 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~------------------------~~~~r~~~~~~~-----------------~ 285 (436)
..+||+||||||||++|.++|+++.- ++.....++... .
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~ 104 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSES 104 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccC
Confidence 47999999999999999999998882 111111111100 0
Q ss_pred CCcceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHH
Q 013823 286 SNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGF 346 (436)
Q Consensus 286 ~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r 346 (436)
.......--++...|++. ........+|++||.++.+-+.+.+ |+ ..+.|+.|+...+
T Consensus 105 ~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~ 173 (325)
T COG0470 105 PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEA 173 (325)
T ss_pred CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHH
Confidence 000011112344444432 1223457899999999999998888 88 6778877655543
No 168
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=4e-06 Score=87.66 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=45.9
Q ss_pred EEEEecCC-cC---CCCccccCCCcee--EEEEcCCCCHHHHHHHHHHHhcccCCC-CCcHHHHHhhhhcCCCCHHHHHH
Q 013823 311 IIVFTTNH-KE---RIDPALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIKGKS-HSLFGEIEGLIQSTDVTPAEVAE 383 (436)
Q Consensus 311 ivI~TTN~-~~---~lD~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~~~~-~~~~~~i~~l~~~~~~tpaei~~ 383 (436)
-+|+|+|. |. .+++.+.. ||. ..+.+..|+.+++..++++.+...+.. ....+.+.-++....-++..+..
T Consensus 241 ~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~g 318 (450)
T PRK14087 241 QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKG 318 (450)
T ss_pred cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHH
Confidence 45667664 33 35778888 884 788899999999999999988764311 22233334444444445555444
Q ss_pred HH
Q 013823 384 EL 385 (436)
Q Consensus 384 ~l 385 (436)
.|
T Consensus 319 aL 320 (450)
T PRK14087 319 SV 320 (450)
T ss_pred HH
Confidence 44
No 169
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.22 E-value=2.3e-06 Score=77.11 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=53.6
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-----------------------cCCC----C--------------
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-----------------------QNDG----A-------------- 282 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-----------------------~~~~----~-------------- 282 (436)
..+..+||+||+|+||+++|.++|..+--.-... .... .
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 4467899999999999999999999876211110 0000 0
Q ss_pred -------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCC
Q 013823 283 -------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY 340 (436)
Q Consensus 283 -------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~ 340 (436)
..+.......+.||..|+.- .+..++|++|+.++.|-|.+++ |+ ..|.|+.
T Consensus 97 ~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp S-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred HHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 00011122233455555544 3458999999999999999998 87 5666654
No 170
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.11 E-value=6.7e-05 Score=72.60 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=38.6
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+-++|+...++..- .+...++.+. -..|++||.||||||||.||-+|+.+||
T Consensus 38 ~g~vGQ~~AReAag-iivdlik~Kk-------maGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 38 AGFVGQENAREAAG-IIVDLIKSKK-------MAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred cccccchhhhhhhh-HHHHHHHhhh-------ccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 45788888877542 2333333332 2358999999999999999999999999
No 171
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.10 E-value=3.5e-06 Score=89.21 Aligned_cols=67 Identities=30% Similarity=0.457 Sum_probs=52.8
Q ss_pred CCccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 198 ~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
..|- ..-.|.+.++|+..++..++|...+...+. +....+-+||+||||||||++++++|+++|.++
T Consensus 7 ~~W~--~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 7 EPWV--EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred Cccc--hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 4674 467899999999999888888887764332 333445678899999999999999999999443
No 172
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.07 E-value=4.2e-06 Score=85.53 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=45.0
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR 277 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r 277 (436)
-|+|+++.|+.+...+.........-...+ -..|+++||+||||||||++|+++|..++.++...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~v 78 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 78 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEe
Confidence 378999999998776654322211111111 12358999999999999999999999999555433
No 173
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=3.7e-05 Score=76.85 Aligned_cols=101 Identities=12% Similarity=0.123 Sum_probs=67.1
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--cCCCC-------------------------C--------------
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR--QNDGA-------------------------S-------------- 283 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r--~~~~~-------------------------~-------------- 283 (436)
.+.++||+||+|+||+++|.++|..+...-... ....| .
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 456899999999999999999999886321100 00000 0
Q ss_pred -------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHH
Q 013823 284 -------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA 350 (436)
Q Consensus 284 -------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~ 350 (436)
.+.......+.||..|+. +...+++|++|++++.|.|.+++ |+ ..+.|+.|+.++....+
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L 175 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEAAANALLKTLEE----PRPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWL 175 (325)
T ss_pred cccCCceEEEEechhhhCHHHHHHHHHHhcC----CCCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHH
Confidence 000011122334444444 23568999999999999999998 88 67899999988876555
Q ss_pred HH
Q 013823 351 SN 352 (436)
Q Consensus 351 ~~ 352 (436)
..
T Consensus 176 ~~ 177 (325)
T PRK06871 176 QA 177 (325)
T ss_pred HH
Confidence 54
No 174
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.02 E-value=6.8e-06 Score=77.03 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=44.0
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+....|..+.||+|.++..+.+.-... -|-- -.+++.||||||||+-+.++|.+|-
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~-----------~gnm--P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAK-----------EGNM--PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHH-----------cCCC--CceEeeCCCCCchhhHHHHHHHHHh
Confidence 567889999999999999887744222 1211 2589999999999999999998764
No 175
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=5e-05 Score=75.76 Aligned_cols=101 Identities=13% Similarity=0.181 Sum_probs=66.7
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcchhhc-----------------------ccCC--C--CC-------------
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD-----------------------RQND--G--AS------------- 283 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~-----------------------r~~~--~--~~------------- 283 (436)
..+.++||+||.|+||+++|.++|..+...-.. .... + ..
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 345689999999999999999999987621100 0000 0 00
Q ss_pred --------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHH
Q 013823 284 --------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVL 349 (436)
Q Consensus 284 --------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i 349 (436)
.+......-+.||+.++. ++.+.++|++|+.++.|-|.+++ |+ ..+.|+.|+.++....
T Consensus 103 ~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~ 175 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMNESASNALLKTLEE----PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQW 175 (319)
T ss_pred CcccCCceEEEecchhhhCHHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHH
Confidence 000011122334444444 23558999999999999999999 98 5889999999886655
Q ss_pred HH
Q 013823 350 AS 351 (436)
Q Consensus 350 ~~ 351 (436)
+.
T Consensus 176 L~ 177 (319)
T PRK06090 176 LK 177 (319)
T ss_pred HH
Confidence 54
No 176
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.02 E-value=1.4e-05 Score=81.05 Aligned_cols=50 Identities=28% Similarity=0.301 Sum_probs=41.0
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+|.-++|++.+|..|.-... .+.-.|+|+-|+.|||||++++|||..|.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp 63 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLP 63 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCC
Confidence 468889999999998744322 23447899999999999999999999887
No 177
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.00 E-value=1.2e-05 Score=86.71 Aligned_cols=108 Identities=16% Similarity=0.105 Sum_probs=67.5
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcch--hhcccCC--CC-----------------------------------CCCC
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVE--MKDRQND--GA-----------------------------------SVGS 286 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~~r~~~--~~-----------------------------------~~~~ 286 (436)
-.++||.|+||||||++|++++..+... +...... .. +.+.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 3579999999999999999999977532 1111100 00 0000
Q ss_pred CcceeecceeecccCc---------ccCCCCeEEEEEecCCcC---CCCccccCCCceeEEEEcCCC-CHHHHHHHHHHH
Q 013823 287 NTKLTLSGILNFIDGL---------WSSCGDERIIVFTTNHKE---RIDPALLRPGRMDVHINMSYC-TVHGFKVLASNY 353 (436)
Q Consensus 287 ~~~~~~s~LL~~ldg~---------~~~~~~~~ivI~TTN~~~---~lD~AllRpGR~d~~I~~~~p-~~~~r~~i~~~~ 353 (436)
....+.+.|++.|+.- .........||+|+|..+ .|+++|+. ||+.+|.+.++ +.++|..|++++
T Consensus 96 l~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~ 173 (589)
T TIGR02031 96 LDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRE 173 (589)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHH
Confidence 1112223344444311 111113467888999765 79999999 99999988765 556688888887
Q ss_pred hc
Q 013823 354 LG 355 (436)
Q Consensus 354 l~ 355 (436)
+.
T Consensus 174 ~~ 175 (589)
T TIGR02031 174 RC 175 (589)
T ss_pred HH
Confidence 63
No 178
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=6e-05 Score=76.69 Aligned_cols=131 Identities=19% Similarity=0.202 Sum_probs=82.8
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc----------------
Q 013823 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR---------------- 277 (436)
Q Consensus 214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r---------------- 277 (436)
+..-++..+++...+...+.+ ..|..+++|||||||||..++-++.++.......
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 777788888888776655432 2344699999999999999999999887221110
Q ss_pred ---------cCCCCCCC------------CCcceeecceeecccCcccCC--------------CCeEEEEEecCCc---
Q 013823 278 ---------QNDGASVG------------SNTKLTLSGILNFIDGLWSSC--------------GDERIIVFTTNHK--- 319 (436)
Q Consensus 278 ---------~~~~~~~~------------~~~~~~~s~LL~~ldg~~~~~--------------~~~~ivI~TTN~~--- 319 (436)
.....+.. .....++--.|+++|.+.... .-.+++|+.+|..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHH
Confidence 00000000 011122223445555443221 2346788999875
Q ss_pred CCCCccccCCCce-eEEEEcCCCCHHHHHHHHHHHhc
Q 013823 320 ERIDPALLRPGRM-DVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 320 ~~lD~AllRpGR~-d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
+.+||-+.+ ++ ...|.||+.+.++...|+..-..
T Consensus 170 ~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 170 DYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred HHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 468887776 44 35589999999999999887654
No 179
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.96 E-value=9.5e-06 Score=80.64 Aligned_cols=58 Identities=34% Similarity=0.480 Sum_probs=40.1
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+|+++...+.-+..+...+..|+.. |.. | +..+|++||||||||||.|+.|||+++.
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~---~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEA---YPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHH---hhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56777766554444454444445432 211 1 3458999999999999999999999984
No 180
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.93 E-value=1.1e-05 Score=82.59 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=43.7
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCC-CCcceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
|+|+++.|+.+...+............... ..++++||+||||||||++|++||..++.++..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~ 80 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChhee
Confidence 899999999997776532221110000001 125789999999999999999999999955543
No 181
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=4.7e-05 Score=75.97 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=34.2
Q ss_pred CeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHH
Q 013823 308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLAS 351 (436)
Q Consensus 308 ~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~ 351 (436)
...++|++|+.++.|-|.+++ |+ ..|.|+.|+.++....+.
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLL 182 (319)
T ss_pred CCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHH
Confidence 457899999999999999999 98 678999999887655554
No 182
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=2.4e-05 Score=78.70 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=67.4
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcchhhc------------------------ccCC---C-C-------------
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD------------------------RQND---G-A------------- 282 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~------------------------r~~~---~-~------------- 282 (436)
..+.++||+||+|+||+++|.++|..+-..-.. .... . .
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 345689999999999999999999988521100 0000 0 0
Q ss_pred ---C-----------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHH
Q 013823 283 ---S-----------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKV 348 (436)
Q Consensus 283 ---~-----------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~ 348 (436)
. .+......-+.||..|+. +++..++|++|++++.|.|.+++ |+- .+.|+.|+.++...
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~ 174 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDAAANALLKTLEE----PPENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALT 174 (334)
T ss_pred hccccCCceEEEEcchHhhCHHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHH
Confidence 0 000111122335555544 24568999999999999999999 985 68999999887666
Q ss_pred HHHH
Q 013823 349 LASN 352 (436)
Q Consensus 349 i~~~ 352 (436)
.+..
T Consensus 175 ~L~~ 178 (334)
T PRK07993 175 WLSR 178 (334)
T ss_pred HHHH
Confidence 5543
No 183
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.91 E-value=2.1e-05 Score=75.54 Aligned_cols=60 Identities=25% Similarity=0.451 Sum_probs=41.1
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..++.+|++.....+..+.+...+..+... +. ....+++|+||||||||+|+.|||+++.
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~---~~----~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEE---FD----GNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHh---hc----cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 445678999876554444444555544422 11 1135899999999999999999999884
No 184
>PHA02624 large T antigen; Provisional
Probab=97.90 E-value=1.5e-05 Score=84.50 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=59.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh-cchhhcccCCCC------------------------CCC-----CCccee
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL-SVEMKDRQNDGA------------------------SVG-----SNTKLT 291 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~r~~~~~------------------------~~~-----~~~~~~ 291 (436)
|+|.++.+|||||||||||+++.+|++.+ |..+. ...+.. ... +..-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vls-VNsPt~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~~~dN 505 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLN-VNCPPDKLNFELGCAIDQFMVVFEDVKGQPADNKDLPSGQGMNN 505 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEE-eeCCcchhHHHhhhhhhceEEEeeeccccccccccCCcccccch
Confidence 67888899999999999999999999999 43222 111100 000 000011
Q ss_pred ecceeecccCcccCCCC-----e-----EEEEEecCCcCCCCccccCCCceeEEEEcCC
Q 013823 292 LSGILNFIDGLWSSCGD-----E-----RIIVFTTNHKERIDPALLRPGRMDVHINMSY 340 (436)
Q Consensus 292 ~s~LL~~ldg~~~~~~~-----~-----~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~ 340 (436)
+..|-+.+||-..-+=+ . --.|.|||. ..||..+.- ||-.+|.|..
T Consensus 506 l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 506 LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 24567788886111100 0 136788986 567888877 9999888864
No 185
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.86 E-value=1.6e-05 Score=84.07 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=45.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.....-|+++.|+++.++.|.+++..... .++ ...+-++|.||||+|||+||++||+.+.
T Consensus 69 i~ry~fF~d~yGlee~ieriv~~l~~Aa~------gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 69 IKRYPAFEEFYGMEEAIEQIVSYFRHAAQ------GLE-EKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccccchhcccCcHHHHHHHHHHHHHHHH------hcC-CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 34456799999999999999887753332 111 2335688999999999999999998765
No 186
>PRK08118 topology modulation protein; Reviewed
Probab=97.86 E-value=1.7e-05 Score=71.88 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=61.1
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCCC--CCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVG--SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA 325 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~~--~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A 325 (436)
.+++.||||+||||+|+.|++.++.+....+..--..+ ..+.. .+...++.+... +. .|+-.|....++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~---~~~~~~~~~~~~--~~--wVidG~~~~~~~~~ 75 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE---EQITVQNELVKE--DE--WIIDGNYGGTMDIR 75 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH---HHHHHHHHHhcC--CC--EEEeCCcchHHHHH
Confidence 48999999999999999999999966443322110000 01111 111112222111 12 34566666666544
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
+ . +.|..|.+..|.......++++.+..
T Consensus 76 l-~--~~d~vi~Ld~p~~~~~~R~~~R~~~~ 103 (167)
T PRK08118 76 L-N--AADTIIFLDIPRTICLYRAFKRRVQY 103 (167)
T ss_pred H-H--hCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 3 2 68999999999998888888887753
No 187
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.85 E-value=0.0011 Score=60.98 Aligned_cols=134 Identities=12% Similarity=0.213 Sum_probs=91.2
Q ss_pred CeEEEEecCCCCCcchHHHHHHHHHhhcCC-ccccceeeeccC----------------------CCCceeEeccCCCee
Q 013823 59 NLTLVFDEWSGMSRNQVFDAAELYLRTKIN-PDTERLKVSKTS----------------------RQKNFTVSIEKGEEV 115 (436)
Q Consensus 59 ~~ti~i~e~~~~~~n~~y~a~~~YL~~~~~-~~~~rl~~~~~~----------------------~~~~~~l~~~~~e~v 115 (436)
..||.|+. .+++|+.+-.+|+.... ..++++.+.... +...+.+.+..| ..
T Consensus 26 ~~sv~I~~-----~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h 99 (187)
T PF08740_consen 26 TSSVEIPS-----DDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-TH 99 (187)
T ss_pred EEEEEECC-----CCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CE
Confidence 46778875 44899999999987754 445676665522 355788999999 77
Q ss_pred EEeecCeeEEEEEEeecCCCCCC-----CcceEEEEEecccchhhHHhhhhHHHHHHHHHHHhcceEEEEeecCCCCCCC
Q 013823 116 TDSFQNVQLQWKFVCKEPQNNHS-----GEKRYFELSFHKKHKQTVICYYLPHVVERAKEIKQEEKVVKLYNRECPYDDD 190 (436)
Q Consensus 116 ~D~F~Gv~~~W~~~~~~~~~~~~-----~~~~~~~l~f~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (436)
...|+| +|..+.+..++... .+.+.++|++..++++ +|..+|.+..+.+ .+.++....||.....
T Consensus 100 ~F~y~G---~~~~~~R~~~~~~~~~~~~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~--~~~~~~~t~Iy~~~~~---- 169 (187)
T PF08740_consen 100 WFWYKG---RWFWFSRQRESNSYNSWTGAPDETLTLSCLGRSPK-PLKDLLEEAREYY--LKKQKGKTTIYRADGS---- 169 (187)
T ss_pred EEEECC---EEEEEEEEeccccccccCCCCceEEEEEEecCCHH-HHHHHHHHHHHHH--HHhcCCcEEEEeCCCC----
Confidence 788999 67666665432211 2478999999988776 5555444444333 2344455779988531
Q ss_pred CCCCCCCCCccccccCCCCCCccc
Q 013823 191 DDGGGGGGMWGSINLEHPSTFDTL 214 (436)
Q Consensus 191 ~~~~~~~~~w~~~~~~~~~~~~~i 214 (436)
+..|..+...+++++++|
T Consensus 170 ------~~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 170 ------EYRWRRVASRPKRPLSTV 187 (187)
T ss_pred ------CCCCcCCCCcCCCCCCCC
Confidence 226999888888899876
No 188
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=1.3e-05 Score=80.28 Aligned_cols=40 Identities=5% Similarity=0.138 Sum_probs=32.4
Q ss_pred eEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHH
Q 013823 309 ERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLAS 351 (436)
Q Consensus 309 ~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~ 351 (436)
...+|++|++++.+.+.+.+ |+ .++.|+.|+.++....+.
T Consensus 143 ~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 143 QVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred CCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence 36788899999999999988 88 688999999887655443
No 189
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.84 E-value=4e-05 Score=74.92 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=29.6
Q ss_pred eEEEEEecCCcC---CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 309 ERIIVFTTNHKE---RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 309 ~~ivI~TTN~~~---~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
++.+|+++|... .+++.|+| .| ..+.++.|+.++...|+..++.
T Consensus 148 ~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 148 DIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp SEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred eeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence 356778877532 47788888 77 5889999999998877777665
No 190
>PRK07261 topology modulation protein; Provisional
Probab=97.83 E-value=1.2e-05 Score=73.06 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=61.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccC
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLR 328 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllR 328 (436)
+++.||||+||||+|+.|+..++.+....+...-..+ ........++..++.+... + . .|+-.|+...+-+..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~--~-~-wIidg~~~~~~~~~~l~ 77 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-WQERDDDDMIADISNFLLK--H-D-WIIDGNYSWCLYEERMQ 77 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-cccCCHHHHHHHHHHHHhC--C-C-EEEcCcchhhhHHHHHH
Confidence 7899999999999999999998865544322111101 1111122333333333221 2 3 34444444433234445
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 329 PGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 329 pGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
++|..|.+..|.......++++.+.
T Consensus 78 --~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 78 --EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred --HCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 7899999999999888888888764
No 191
>PRK12377 putative replication protein; Provisional
Probab=97.81 E-value=3.9e-05 Score=73.93 Aligned_cols=26 Identities=42% Similarity=0.673 Sum_probs=23.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+++|+||||||||.||.|||+++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999885
No 192
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.79 E-value=2.3e-05 Score=82.56 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=34.0
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.|.++.|....++.+.- .......++|+||||||||++++.|++.+.
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 57777777665554321 122345799999999999999999998665
No 193
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.75 E-value=4.7e-05 Score=65.27 Aligned_cols=53 Identities=17% Similarity=0.116 Sum_probs=41.8
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.|.|++-+++.|...+..++..+ .-..|--+.|+||||||||.+++.||+.+-
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 58899999999999999887654 112233455899999999999999999763
No 194
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.75 E-value=3.9e-05 Score=76.94 Aligned_cols=54 Identities=33% Similarity=0.454 Sum_probs=38.8
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+-++|+.+.++..--.+. .++ -|.-..|++||.||||||||.||-+||.+||
T Consensus 22 ~~~GlVGQ~~AReAagiiv~-mIk-------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVD-MIK-------EGKIAGRAILIAGPPGTGKTALAMAIAKELG 75 (398)
T ss_dssp EETTEES-HHHHHHHHHHHH-HHH-------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred ccccccChHHHHHHHHHHHH-HHh-------cccccCcEEEEeCCCCCCchHHHHHHHHHhC
Confidence 35679999999987644333 232 2333568999999999999999999999999
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.75 E-value=2e-05 Score=66.71 Aligned_cols=28 Identities=39% Similarity=0.638 Sum_probs=25.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
+..++|+||||||||++++++|..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3579999999999999999999998854
No 196
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=5.3e-05 Score=78.41 Aligned_cols=103 Identities=21% Similarity=0.247 Sum_probs=64.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC----------------------------------------C-C
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA----------------------------------------S-V 284 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~----------------------------------------~-~ 284 (436)
-.++||+||||+|||.||..||...+.++...-.... . .
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG 617 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG 617 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC
Confidence 3579999999999999999999988844432211110 0 0
Q ss_pred CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc-cccCCCceeEEEEcCCCCH-HHHHHHHH
Q 013823 285 GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP-ALLRPGRMDVHINMSYCTV-HGFKVLAS 351 (436)
Q Consensus 285 ~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~-AllRpGR~d~~I~~~~p~~-~~r~~i~~ 351 (436)
...++.++..|+-.+..... .|...+|++||.+.+-|.. .++. .|+..|++|..+. ++...++.
T Consensus 618 PRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 618 PRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred chhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 12233344444444444432 2445677778877665532 4555 8999999998877 44444444
No 197
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2.7e-05 Score=80.07 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=41.0
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...|.||.|++..|..+.-... -..++||+||||||||++|+.+..-|-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 4579999999999998754332 357899999999999999999988776
No 198
>PRK08181 transposase; Validated
Probab=97.66 E-value=6.2e-05 Score=73.43 Aligned_cols=26 Identities=50% Similarity=0.755 Sum_probs=23.3
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+++|+||||||||.|+.|+|+++-
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHH
Confidence 46899999999999999999998663
No 199
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.66 E-value=5.6e-05 Score=79.89 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=36.8
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..|++|.|+...++.+.-.+ .....++|.||||||||+++++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 47899999988876553321 2235699999999999999999997543
No 200
>PRK08116 hypothetical protein; Validated
Probab=97.64 E-value=9e-05 Score=72.32 Aligned_cols=26 Identities=50% Similarity=0.712 Sum_probs=23.8
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+|++|+||||||||.||.|||+++-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999874
No 201
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.0001 Score=71.35 Aligned_cols=54 Identities=31% Similarity=0.583 Sum_probs=36.7
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.++-+.+...+.....+..+. ++|. .+.+++||||||||||.||.|||+++-
T Consensus 77 ~~~d~~~~~~~~~~~l~~~~~~~---~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 77 EEFDFEFQPGIDKKALEDLASLV---EFFE-----RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred ccccccCCcchhHHHHHHHHHHH---HHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 34455555555554444444332 2232 457899999999999999999999886
No 202
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=4e-05 Score=64.85 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=53.1
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhhcccC-----CCCCC-CCCc---ceeecceeecccCcccCCCCeEEEEEecCCc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMKDRQN-----DGASV-GSNT---KLTLSGILNFIDGLWSSCGDERIIVFTTNHK 319 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~-----~~~~~-~~~~---~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~ 319 (436)
|++.||||+||||+|+.+|+.+|........ ..... .... ......+.+.++.+...+ ..-.+|+..++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ii~g~~~ 80 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKP-DNDNWIIDGSYE 80 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETT-T--EEEEECCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccC-CCCeEEEeCCCc
Confidence 6899999999999999999999854322111 00000 0100 001111222333332111 123344444332
Q ss_pred CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
...+ + +-...+..|.+..|....+.+++++.+..
T Consensus 81 ~~~~--~-~~~~~~~~i~l~~~~~~~~~~~~~R~~~~ 114 (121)
T PF13207_consen 81 SEME--I-RLPEFDHVIYLDAPDEECRERRLKRRLRR 114 (121)
T ss_dssp HCCH--S-CCHHGGCEEEEEEEEHHHHHHHHHHHHHH
T ss_pred cchh--h-hhhcCCEEEEEECCCHHHHHHHHHHHhHH
Confidence 2222 2 22256677888877776777777766544
No 203
>PRK04132 replication factor C small subunit; Provisional
Probab=97.58 E-value=0.00018 Score=79.99 Aligned_cols=105 Identities=10% Similarity=0.008 Sum_probs=65.9
Q ss_pred eeEeC--CCCCChhHHHHHHHHHh-----cchhhcccCCCC-C-------------CCCC-cceeecceeecccCcc---
Q 013823 249 YLLYG--PPGTGKSSLIAAMANYL-----SVEMKDRQNDGA-S-------------VGSN-TKLTLSGILNFIDGLW--- 303 (436)
Q Consensus 249 ~LL~G--PpGtGKT~la~aiA~~l-----~~~~~~r~~~~~-~-------------~~~~-~~~~~s~LL~~ldg~~--- 303 (436)
.+..| |++.||||+|+|+|+++ +.++...+.++. + .... .....--++++.|.+.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~A 646 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 646 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHH
Confidence 35568 99999999999999998 222222222221 0 0000 0000112344444442
Q ss_pred --------cCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 304 --------SSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 304 --------~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
......+.+|++||.++.+.+++++ |+ ..+.|+.|+.++....+......
T Consensus 647 QnALLk~lEep~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 647 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred HHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 1112457899999999999999998 98 78899999988877666655443
No 204
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.00037 Score=71.36 Aligned_cols=141 Identities=14% Similarity=0.210 Sum_probs=76.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR------- 277 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r------- 277 (436)
..+.-+|++++..+.-......... .- ...|. ....++||||.|.|||.|++|++++........
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~-va------~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKA-VA------ENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHH-HH------hccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 4555689997655554433222111 11 11121 235689999999999999999999887111100
Q ss_pred ------------cCC--------CCC----CC----CCcceeecceeecccCcccCCCCeEEEEEecCCcCCC---Cccc
Q 013823 278 ------------QND--------GAS----VG----SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI---DPAL 326 (436)
Q Consensus 278 ------------~~~--------~~~----~~----~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l---D~Al 326 (436)
... ... ++ .....+...|...+..+... ...||+.+-..|..+ +|-|
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL 229 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRL 229 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHH
Confidence 000 000 00 00001111122222222221 124444444556654 4777
Q ss_pred cCCCcee--EEEEcCCCCHHHHHHHHHHHhccc
Q 013823 327 LRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 327 lRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.+ ||. ..+++..|+.+.|..++.......
T Consensus 230 ~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 230 RS--RLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred HH--HHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 77 875 678899999999999999865544
No 205
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.54 E-value=8.8e-05 Score=72.62 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=81.0
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh------hc
Q 013823 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM------KD 276 (436)
Q Consensus 203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~------~~ 276 (436)
+...+|..++++++.+++...+.++. +.+.-...|+|||||||||+.+.+.|..+-.+- ..
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~-------------~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYS-------------GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhc-------------cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 34678889999999998887776642 111112899999999999999999998776310 00
Q ss_pred ccCCCC-CCC----------C-Cc-------ceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCccc
Q 013823 277 RQNDGA-SVG----------S-NT-------KLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPAL 326 (436)
Q Consensus 277 r~~~~~-~~~----------~-~~-------~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~Al 326 (436)
...++. +.+ . .. ....-.+|.+-|... .....+.=+....|++..+-|++
T Consensus 99 lnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~ 178 (360)
T KOG0990|consen 99 LNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQ 178 (360)
T ss_pred hhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchh
Confidence 000000 000 0 00 011112333333221 11122344557789999999999
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 327 LRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 327 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.. |+. ...|...+.+.-....++....+
T Consensus 179 qs--Rct-rfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 179 QS--RCT-RFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred hc--ccc-cCCCCCCChhhhhhHHHHHHhcc
Confidence 87 774 34566666555555555555443
No 206
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.00054 Score=66.12 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=58.1
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---------------------------------------C-
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA---------------------------------------S- 283 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~---------------------------------------~- 283 (436)
..+.++||+||+|+||..+|.++|..+-..-.......| .
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 456789999999999999999999887521100000000 0
Q ss_pred CC------------CCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCC
Q 013823 284 VG------------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYC 341 (436)
Q Consensus 284 ~~------------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p 341 (436)
.. .......+.||..++. +..+.++|++|+.++.+.|.+++ |+ ..+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m~~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhCHHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhh--he-eeeecCCh
Confidence 00 0011122334444444 24568999999999999999999 88 45667666
No 207
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.52 E-value=7.2e-05 Score=67.17 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=27.8
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
+.+..++|+||||||||++++++|..++..+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 35678999999999999999999999996544
No 208
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.52 E-value=6.8e-05 Score=78.03 Aligned_cols=70 Identities=24% Similarity=0.331 Sum_probs=51.3
Q ss_pred CCCccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 197 GGMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 197 ~~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
+..|- ..-.|.+.++|+.......+|.+.+..+.... ..-..+-+||+||+||||||.++.||+++|+.+
T Consensus 69 ~elW~--eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 69 FELWV--EKYKPRTLEELAVHKKKISEVKQWLKQVAEFT------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred cchhH--HhcCcccHHHHhhhHHhHHHHHHHHHHHHHhc------cCCCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 44664 46678999999999888888888776222111 011235688999999999999999999999433
No 209
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.50 E-value=0.00022 Score=68.70 Aligned_cols=138 Identities=21% Similarity=0.268 Sum_probs=86.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc---chh-------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS---VEM------- 274 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~------- 274 (436)
.-.|.+|+.+.+.++....+..... . + . --.+|+|||+|+||-|.+.|+-+++- ++-
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~-----~------~-d-~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSS-----T------G-D-FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcc-----c------C-C-CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 4567888888888888877655322 0 0 0 13699999999999999999988774 000
Q ss_pred -----------hccc------CCCCCCCCCc----------------------ceeecceeecccCcccCC---------
Q 013823 275 -----------KDRQ------NDGASVGSNT----------------------KLTLSGILNFIDGLWSSC--------- 306 (436)
Q Consensus 275 -----------~~r~------~~~~~~~~~~----------------------~~~~s~LL~~ldg~~~~~--------- 306 (436)
...+ -.+++.+... +...--++++.|.+....
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME 152 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTME 152 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHH
Confidence 0000 0000111111 111122445555442110
Q ss_pred --CCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccC
Q 013823 307 --GDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKG 358 (436)
Q Consensus 307 --~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~ 358 (436)
....=+|+.+|....+-+++.+ |+ ..|.+|.|+.++...++...+...+
T Consensus 153 kYs~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 153 KYSSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEG 203 (351)
T ss_pred HHhcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 0124467888988889999988 87 6789999999999999999887764
No 210
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.48 E-value=0.00023 Score=71.47 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=39.7
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-|++++|.....+.+.+.+.... .....+||+|++||||+++|++|-....
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~ 54 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSS 54 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCC
Confidence 36788898888888888776443 2235799999999999999999975443
No 211
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.47 E-value=0.00012 Score=79.31 Aligned_cols=52 Identities=29% Similarity=0.364 Sum_probs=42.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-.+|..|++|+|+++.++.|...+. .++.++|+||||||||++++++|..+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~---------------~~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAK---------------QRRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHH---------------hCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3457899999999999887765443 124799999999999999999999877
No 212
>PRK06921 hypothetical protein; Provisional
Probab=97.46 E-value=0.00022 Score=69.58 Aligned_cols=26 Identities=46% Similarity=0.698 Sum_probs=23.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+++|+||||||||.|+.|||+++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 46899999999999999999999873
No 213
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.43 E-value=0.00035 Score=77.61 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=33.0
Q ss_pred eEEEEEecCCcC-------------CCCccccCCCceeEE-EEcCCCCHHHHHHHHHHHhc
Q 013823 309 ERIIVFTTNHKE-------------RIDPALLRPGRMDVH-INMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 309 ~~ivI~TTN~~~-------------~lD~AllRpGR~d~~-I~~~~p~~~~r~~i~~~~l~ 355 (436)
..-||+|+|..+ .|+++++. |||.. +.++.|+.+.=+.|..+.+.
T Consensus 600 r~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 600 ETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred CeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 467889999742 47799999 99976 55688888776666665543
No 214
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.43 E-value=0.00016 Score=72.52 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=23.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+++||||||||||.|+.|||+++-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~ 208 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL 208 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH
Confidence 7899999999999999999999874
No 215
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.43 E-value=0.00034 Score=76.55 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=40.2
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+|++++|.....+.+.+.+..... ....+||+|++||||+++|++|-+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~ 373 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESE 373 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCC
Confidence 3688888888777777776664332 235699999999999999999987654
No 216
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.42 E-value=0.0017 Score=62.85 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.1
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-++|+||||+|||++++.+++.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999999876
No 217
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.41 E-value=9.9e-05 Score=67.59 Aligned_cols=27 Identities=48% Similarity=0.758 Sum_probs=22.9
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.+++|+||||||||.||.|||+++-
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 357899999999999999999998764
No 218
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=9.9e-05 Score=64.18 Aligned_cols=23 Identities=48% Similarity=0.866 Sum_probs=21.9
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+++.|||||||||+|+.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999999988
No 219
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.36 E-value=0.00038 Score=74.56 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=42.9
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+|+.++|.....+.+.+.+..... ....+||+|++||||+++|++|.....
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 35789999999988888887764432 235799999999999999999997654
No 220
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.33 E-value=0.00018 Score=77.99 Aligned_cols=48 Identities=38% Similarity=0.475 Sum_probs=40.1
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+++++|+++.++.+...+. .+++++|+||||||||++++++|+.++
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~ 62 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLP 62 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcC
Confidence 568899999998887765443 125899999999999999999999887
No 221
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.33 E-value=0.00014 Score=60.70 Aligned_cols=23 Identities=48% Similarity=0.846 Sum_probs=21.1
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|.||||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998876
No 222
>PRK06526 transposase; Provisional
Probab=97.29 E-value=0.00016 Score=70.08 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=23.3
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+++|+||||||||.|+.+|+.++-
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 46899999999999999999998763
No 223
>PHA00729 NTP-binding motif containing protein
Probab=97.22 E-value=0.00022 Score=67.49 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=23.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..++++||||||||++|.+||..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999986
No 224
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.21 E-value=0.00023 Score=62.64 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=25.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
.++|+||||+|||++++.+|..++..+.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~ 29 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVD 29 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999999965543
No 225
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.18 E-value=0.00035 Score=65.33 Aligned_cols=22 Identities=45% Similarity=0.842 Sum_probs=17.7
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998777777665
No 226
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.17 E-value=0.00031 Score=63.92 Aligned_cols=27 Identities=48% Similarity=0.776 Sum_probs=23.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
...+||.||+|||||.+|+++|..+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 346899999999999999999999984
No 227
>PRK03839 putative kinase; Provisional
Probab=97.16 E-value=0.00027 Score=64.39 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=24.8
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
++|.|+||+||||+++.+|+.++..+.+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id 30 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVD 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 7899999999999999999999965543
No 228
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.15 E-value=0.0003 Score=64.13 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=22.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+++.||||+|||++|+.||..+|+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~ 25 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 689999999999999999999994
No 229
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.15 E-value=0.00053 Score=68.94 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=31.5
Q ss_pred ccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 215 AMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 215 ~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+|.....+.+.+.+.... .....+||+|++||||+++|++|-....
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 444445555555554332 2346799999999999999999976544
No 230
>PRK13947 shikimate kinase; Provisional
Probab=97.15 E-value=0.00031 Score=63.23 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=26.5
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDR 277 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r 277 (436)
.++|.||||||||++++.+|+.++..+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999766544
No 231
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.14 E-value=0.00047 Score=63.58 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.3
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++-++|.||||+|||+|++.+.....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456688999999999999999988763
No 232
>PRK14531 adenylate kinase; Provisional
Probab=97.13 E-value=0.00037 Score=63.90 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=24.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
+-+++.||||+||||+++.+|..+|+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~ 29 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLR 29 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999999954
No 233
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.13 E-value=0.00032 Score=71.33 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=26.8
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.+.++|+.||||+|+|||+|.....+.+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 457899999999999999999999888773
No 234
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.12 E-value=0.00064 Score=69.41 Aligned_cols=105 Identities=21% Similarity=0.390 Sum_probs=65.7
Q ss_pred CcceEEEEEecccchhhHHhhhhHHHHHHHHHHH-------hcc------eEEEEeecCCCCCCCCCCCCCCCCcccccc
Q 013823 139 GEKRYFELSFHKKHKQTVICYYLPHVVERAKEIK-------QEE------KVVKLYNRECPYDDDDDGGGGGGMWGSINL 205 (436)
Q Consensus 139 ~~~~~~~l~f~~~~~~~vl~~yl~~v~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 205 (436)
+++....|.=..-.+. -|+.+-..|++.|+... ... +..++-...++. +..|.-...
T Consensus 169 G~~k~v~l~d~pl~~~-ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPPf---------Sd~~EITav 238 (604)
T COG1855 169 GEWKLVRLSDKPLTRE-ELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPPF---------SDRWEITAV 238 (604)
T ss_pred CcEEEEEcCCccCCHH-HHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecCCC---------CCceEEEEE
Confidence 4566665543332222 46677778887776542 111 122222222221 234553333
Q ss_pred CC--CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 206 EH--PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 206 ~~--~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.| ..++++-.+++.+++.+.+. .+|+|+.||||.||||+|+|+|.++.
T Consensus 239 RPvvk~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 239 RPVVKLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred eeeEEechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHH
Confidence 33 24789999999999988652 27999999999999999999999887
No 235
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0052 Score=60.95 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=40.9
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 214 LAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+|+++.|+.+.-.+..-.++...-..+. --.|+.+|+.||.|.|||.+|+.+|+..+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~ 75 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAG 75 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhC
Confidence 78999999988665543222111111111 12478999999999999999999999888
No 236
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.0018 Score=63.72 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=57.7
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcchh----------------hcc--cCCC--CC--------------------
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEM----------------KDR--QNDG--AS-------------------- 283 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~----------------~~r--~~~~--~~-------------------- 283 (436)
..+.+|||+||+|+||+.+|.++|..+-..- ... .... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 3456899999999999999999999875210 000 0000 00
Q ss_pred -------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCC
Q 013823 284 -------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYC 341 (436)
Q Consensus 284 -------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p 341 (436)
.+......-+.||+.|+.- .+++++|++|+.++.|.|.+++ |+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMTLDAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 0000111223345555442 3568999999999999999998 88 56677754
No 237
>PRK13949 shikimate kinase; Provisional
Probab=97.07 E-value=0.00044 Score=62.74 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=26.0
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
+.++|.||||+|||++++.+|+.++..+.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 358999999999999999999999965544
No 238
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.06 E-value=0.00083 Score=71.60 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=76.1
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC----------
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG---------- 281 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~---------- 281 (436)
+|.+.+++|+-|.- ..|=.....+...| ..---.+||+|.||||||-+.+.+++.+--........+
T Consensus 430 sIye~edvKkglLL--qLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLL--QLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHH--HHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 45677777776632 22333333333333 111134999999999999999999987651111000000
Q ss_pred ----------------------CCC---CCCcceeecceeeccc---------CcccCCCCeEEEEEecCCcC-------
Q 013823 282 ----------------------ASV---GSNTKLTLSGILNFID---------GLWSSCGDERIIVFTTNHKE------- 320 (436)
Q Consensus 282 ----------------------~~~---~~~~~~~~s~LL~~ld---------g~~~~~~~~~ivI~TTN~~~------- 320 (436)
|-. +..+..+.+.|+..|+ |+...-+...-|+++.|..+
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k 587 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNK 587 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCC
Confidence 000 0111122333444333 22222223345788888432
Q ss_pred ------CCCccccCCCceeEEE-EcCCCCHHHHHHHHHHHhcc
Q 013823 321 ------RIDPALLRPGRMDVHI-NMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 321 ------~lD~AllRpGR~d~~I-~~~~p~~~~r~~i~~~~l~~ 356 (436)
.|+|.|++ |||.+. -+..||...=+.|..+....
T Consensus 588 ~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~HivsL 628 (804)
T KOG0478|consen 588 SIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVAL 628 (804)
T ss_pred chhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHHh
Confidence 37899999 999664 45888877555666665543
No 239
>PRK14532 adenylate kinase; Provisional
Probab=97.05 E-value=0.00042 Score=63.56 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=23.5
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.++|.||||+||||+++.||..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~ 27 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 37899999999999999999999943
No 240
>PHA02774 E1; Provisional
Probab=97.05 E-value=0.00076 Score=71.57 Aligned_cols=30 Identities=37% Similarity=0.706 Sum_probs=27.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|.|.++.++||||||||||+++.+|++.++
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 556667899999999999999999999986
No 241
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.04 E-value=0.00041 Score=62.04 Aligned_cols=27 Identities=33% Similarity=0.651 Sum_probs=23.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
++|.||||||||++++.+++.++..+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999985443
No 242
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0057 Score=60.25 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=34.6
Q ss_pred cceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHH
Q 013823 293 SGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLA 350 (436)
Q Consensus 293 s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~ 350 (436)
+.||+.++.- +.+.++|++|+.++.|-|.+++ |+ .+|.|+. +.+....++
T Consensus 122 NaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 122 NSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred HHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHH
Confidence 3355555442 3458899999999999999999 98 6788876 444433333
No 243
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00031 Score=68.83 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=43.3
Q ss_pred Ccc-cccChhHHHHHHHHHHHHHhhHHHHHHhC-------CCC-cceeeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823 211 FDT-LAMDPELKQMILDDLDRFLRRKEFYRRVG-------KAW-KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ 278 (436)
Q Consensus 211 ~~~-i~g~~~~k~~i~~~l~~~l~~~~~~~~~g-------~~~-~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~ 278 (436)
+|+ |+|++..|+.+.-.+-. .|+++. +.. +..+||.||.|||||.||+.+|..+++++.-.+
T Consensus 59 Ld~YVIGQe~AKKvLsVAVYN------HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 59 LDEYVIGQEQAKKVLSVAVYN------HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred hhhheecchhhhceeeeeehh------HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence 454 67888888766443332 233332 112 346999999999999999999999998775443
No 244
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.0026 Score=63.09 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=64.8
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcch---------------hhcccCCCC---------------C-C---------
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE---------------MKDRQNDGA---------------S-V--------- 284 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~---------------~~~r~~~~~---------------~-~--------- 284 (436)
.+..|||+|+.|.||+.+++++|+.+... ..+...... . .
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 45679999999999999999999987210 011000000 0 0
Q ss_pred ---CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHH
Q 013823 285 ---GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLAS 351 (436)
Q Consensus 285 ---~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~ 351 (436)
+.......+.||..|+.. ++..++|++|+.++.|-|.+.+ |+ .+++|+.++.++....+.
T Consensus 97 ~~~e~m~~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 97 KNIEKTSNSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKILAKLL 159 (299)
T ss_pred ecccccCHHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHHHHHHH
Confidence 001111233455566553 3457888888888999999988 77 678999998887665444
No 245
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.01 E-value=0.00043 Score=58.64 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.4
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+|.|+||+||||+|+.|+..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~ 23 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG 23 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999999975
No 246
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.01 E-value=0.00049 Score=60.62 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.7
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
++|.||||+|||++++.++..++....
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999999885443
No 247
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.00 E-value=0.00043 Score=62.62 Aligned_cols=29 Identities=38% Similarity=0.571 Sum_probs=20.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.++.++|+||||+|||++++++...+...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34789999999999999999998877644
No 248
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.00 E-value=0.00054 Score=59.68 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=26.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMKDRQ 278 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~r~ 278 (436)
+.+.||||||||++|+.+|..+++++.+..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999997776554
No 249
>PRK09183 transposase/IS protein; Provisional
Probab=96.99 E-value=0.0005 Score=66.75 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..+++|+||||||||+|+.+|+..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998765
No 250
>PRK00625 shikimate kinase; Provisional
Probab=96.97 E-value=0.00051 Score=62.61 Aligned_cols=29 Identities=38% Similarity=0.566 Sum_probs=25.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
.++|.|+||+|||++++.+|+.++..+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id 30 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFD 30 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999999965543
No 251
>PF13245 AAA_19: Part of AAA domain
Probab=96.96 E-value=0.00074 Score=52.93 Aligned_cols=23 Identities=48% Similarity=0.885 Sum_probs=15.8
Q ss_pred eeeEeCCCCCChhH-HHHHHHHHh
Q 013823 248 GYLLYGPPGTGKSS-LIAAMANYL 270 (436)
Q Consensus 248 g~LL~GPpGtGKT~-la~aiA~~l 270 (436)
-+++.||||||||+ +++.++..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 35569999999995 555554443
No 252
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.95 E-value=0.00059 Score=62.16 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=23.2
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
-+++.||||+||||+++.+|..+|..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47889999999999999999998843
No 253
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.95 E-value=0.0027 Score=74.20 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=43.5
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
....++..+++++|.++..++|...+. .+....+-+-++||+|+||||||+++++.+.
T Consensus 175 l~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 175 LNLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred hccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 334556678899998888887766442 1223346688999999999999999988765
No 254
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.93 E-value=0.00062 Score=62.43 Aligned_cols=25 Identities=36% Similarity=0.687 Sum_probs=23.0
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
++|.||||+|||++++.||..+|..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~ 26 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLP 26 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 7899999999999999999999844
No 255
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.93 E-value=0.001 Score=60.32 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=32.3
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+|.....+.+.+.+.... ..+..+||+|++||||+.+|++|-+...
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 3555556666666555433 2347799999999999999999988554
No 256
>PRK06762 hypothetical protein; Provisional
Probab=96.93 E-value=0.00071 Score=60.69 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=23.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-++|.|+||+||||+|+.+++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999999984
No 257
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.89 E-value=0.00086 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.4
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999987
No 258
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.87 E-value=0.00081 Score=60.85 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=27.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKDR 277 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r 277 (436)
+.+.|.|++|+||||+.+++|+.|+.++.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~ 33 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT 33 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc
Confidence 4689999999999999999999999777654
No 259
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.00071 Score=60.29 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=23.7
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
+-+.|||||||||+++-||..+|+.+.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCcee
Confidence 557899999999999999999996554
No 260
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.86 E-value=0.00065 Score=57.97 Aligned_cols=25 Identities=44% Similarity=0.817 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.++++||||+|||++++.++..+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhH
Confidence 5688999999999999999999874
No 261
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.86 E-value=0.004 Score=66.14 Aligned_cols=142 Identities=16% Similarity=0.242 Sum_probs=78.6
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCc--ceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC------
Q 013823 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK--RGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA------ 282 (436)
Q Consensus 211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~--rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~------ 282 (436)
|-.|.|.+.+|.-|.- ..+..-..+..-|.+.+ -.+|+.|.||||||-+.++.++.+.-...-......
T Consensus 344 ~PsIyGhe~VK~GilL---~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILL---SLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHH---HHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 5567777777776632 22222222222222221 239999999999999999999987621111100000
Q ss_pred --------------------------CCCCCcceee---cceeecccC---------cccCCCCeEEEEEecCCcC----
Q 013823 283 --------------------------SVGSNTKLTL---SGILNFIDG---------LWSSCGDERIIVFTTNHKE---- 320 (436)
Q Consensus 283 --------------------------~~~~~~~~~~---s~LL~~ldg---------~~~~~~~~~ivI~TTN~~~---- 320 (436)
-.++..+... -.++.+|+. +...-+..--|++++|...
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYd 500 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYD 500 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccc
Confidence 0001111111 112233321 1111111234678888543
Q ss_pred ---------CCCccccCCCceeE-EEEcCCCCHHHHHHHHHHHhccc
Q 013823 321 ---------RIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 321 ---------~lD~AllRpGR~d~-~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.+++++++ |||. .|.+.-|++..=..|.++.+..+
T Consensus 501 R~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 501 RKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred cccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 37889999 9995 56779999988788888887654
No 262
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.86 E-value=0.00091 Score=60.77 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+-++|.||||+||||++++++..++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 56899999999999999999998763
No 263
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.85 E-value=0.002 Score=64.15 Aligned_cols=55 Identities=29% Similarity=0.327 Sum_probs=39.7
Q ss_pred cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 216 MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 216 g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
+.++.++.+.+.+...+.... -..++..+.|.|+||||||++++.+|..+|..+.
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 445566666666655443221 2355677999999999999999999999996554
No 264
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.84 E-value=0.0022 Score=64.35 Aligned_cols=53 Identities=30% Similarity=0.352 Sum_probs=41.1
Q ss_pred Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCC-CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 211 ~~-~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+ ++.|.++..++|.+++... ..|.. .++-++|.||+|+|||++++.+.+.+.
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~A--------A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSA--------AQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHH--------HhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 55 7899999999998876632 22333 345678999999999999999998776
No 265
>PRK06217 hypothetical protein; Validated
Probab=96.84 E-value=0.00082 Score=61.55 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=54.1
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCCCC---Ccceeecceeecc-cCcccCCCCeEEEEEecCCcCCCC
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGS---NTKLTLSGILNFI-DGLWSSCGDERIIVFTTNHKERID 323 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~~~---~~~~~~s~LL~~l-dg~~~~~~~~~ivI~TTN~~~~lD 323 (436)
-|+|.|+||+||||++++||..++++..+.+.--..... .........+..+ +.+.. ++..|| .-+.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi--~G~~~~~~- 77 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRP--REGWVL--SGSALGWG- 77 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhc--CCCEEE--EccHHHHH-
Confidence 389999999999999999999999665433221110000 0011111111111 11111 222332 23333222
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 013823 324 PALLRPGRMDVHINMSYCTVHGFKVLASNY 353 (436)
Q Consensus 324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~ 353 (436)
..+.. ++|..|.+..|.......+..+.
T Consensus 78 ~~~~~--~~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 78 DPLEP--LFDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred HHHHh--hCCEEEEEECCHHHHHHHHHcCc
Confidence 23444 78999999998888777777654
No 266
>PRK13946 shikimate kinase; Provisional
Probab=96.83 E-value=0.00093 Score=61.33 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=28.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ 278 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~ 278 (436)
++.++|.|+||||||++++.+|+.+|.++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999997665543
No 267
>PRK14527 adenylate kinase; Provisional
Probab=96.83 E-value=0.001 Score=61.39 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=24.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+.-+++.||||+|||++++.+|..++.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 455899999999999999999999884
No 268
>PRK02496 adk adenylate kinase; Provisional
Probab=96.83 E-value=0.00085 Score=61.33 Aligned_cols=24 Identities=33% Similarity=0.751 Sum_probs=22.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+++.||||+|||++++.||..++.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~ 27 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHI 27 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999984
No 269
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.83 E-value=0.0017 Score=69.99 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=60.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc--hhhccc--------------------CC----CC-------------CCCCC
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV--EMKDRQ--------------------ND----GA-------------SVGSN 287 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~r~--------------------~~----~~-------------~~~~~ 287 (436)
.|+||.|++|||||+++++++..+.. ++...- .. .. ..+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 68999999999999999999998752 111000 00 00 01112
Q ss_pred cceeecceeeccc---------CcccCCCCeEEEEEecCCc---CCCCccccCCCceeEEEEcCCCCHHH
Q 013823 288 TKLTLSGILNFID---------GLWSSCGDERIIVFTTNHK---ERIDPALLRPGRMDVHINMSYCTVHG 345 (436)
Q Consensus 288 ~~~~~s~LL~~ld---------g~~~~~~~~~ivI~TTN~~---~~lD~AllRpGR~d~~I~~~~p~~~~ 345 (436)
...+++.|++.|+ |.........++|+|-|.. ..|+++++. ||+.+|.+++|+..+
T Consensus 106 ~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 106 EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence 3334445555553 2222222346777775433 458999999 999999999998764
No 270
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.00089 Score=58.86 Aligned_cols=29 Identities=38% Similarity=0.557 Sum_probs=25.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
-.+|+.|-||||||+++..||..+++...
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i 36 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYI 36 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceE
Confidence 36999999999999999999999995543
No 271
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.81 E-value=0.0012 Score=57.45 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=25.7
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
+...-++|.|+.|+|||++++++++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344568899999999999999999999853
No 272
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.80 E-value=0.0023 Score=59.63 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|......++|.|+.|+|||++++.|+.+.-
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~~ 77 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEYF 77 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHhc
Confidence 444445678999999999999999977643
No 273
>PRK14530 adenylate kinase; Provisional
Probab=96.80 E-value=0.001 Score=62.59 Aligned_cols=27 Identities=37% Similarity=0.600 Sum_probs=24.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
.++|.||||+||||+++.||..+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~ 31 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEH 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 589999999999999999999999543
No 274
>PRK13948 shikimate kinase; Provisional
Probab=96.80 E-value=0.0011 Score=60.90 Aligned_cols=34 Identities=26% Similarity=0.147 Sum_probs=29.0
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR 277 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r 277 (436)
+.++.++|.|++|||||++++.+|+.++..+.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~ 41 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDT 41 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEC
Confidence 3457899999999999999999999999665543
No 275
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.78 E-value=0.00095 Score=58.55 Aligned_cols=23 Identities=35% Similarity=0.752 Sum_probs=20.9
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++++||||||||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998774
No 276
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.001 Score=60.98 Aligned_cols=27 Identities=41% Similarity=0.720 Sum_probs=23.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
-+++.||||+||||+|+.||+.+++.-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 378999999999999999999988443
No 277
>PLN02200 adenylate kinase family protein
Probab=96.77 E-value=0.0012 Score=63.17 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=24.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+.-+++.||||||||++|+.||..+|+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~ 69 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGF 69 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345889999999999999999999994
No 278
>PRK06851 hypothetical protein; Provisional
Probab=96.75 E-value=0.0049 Score=62.63 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=50.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
..+-++|.||||||||++++.++..+...-......-+..+ -+.+|++.-. +-.+.|+-.+.|..+||
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d----------~~slDgviip--~l~~aivDgtaph~~~P 96 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSD----------NDSLDGVIIP--ELKIAILDGTAPHVVDP 96 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCC----------CCceeeEEec--CCCEEEEcCCCcCcCCC
Confidence 34679999999999999999999887432111110000000 1234554321 22455566557788888
Q ss_pred cccCCCceeEEEEcCC
Q 013823 325 ALLRPGRMDVHINMSY 340 (436)
Q Consensus 325 AllRpGR~d~~I~~~~ 340 (436)
. +||=.|..|.+..
T Consensus 97 ~--~pgav~eiinL~~ 110 (367)
T PRK06851 97 K--APGAVEEIINLGD 110 (367)
T ss_pred C--CCCcceEEEEHHH
Confidence 5 4888888888875
No 279
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.75 E-value=0.0033 Score=70.24 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=89.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHh-hHHHHHHhCCCCc-c-eeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLR-RKEFYRRVGKAWK-R-GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG 281 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~-~~~~~~~~g~~~~-r-g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~ 281 (436)
...|.....+.+....-..+.+.+...-. .+..|...+.... . .+|++||||.|||+.+.++|.++|..+.......
T Consensus 313 k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~ 392 (871)
T KOG1968|consen 313 KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASD 392 (871)
T ss_pred ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccc
Confidence 45566667788877766666666654421 1222333222111 2 3699999999999999999999995554333221
Q ss_pred CC-----------------CC----------CCcceeecceeecccCcccCCC------------CeEEEEEecCCcCCC
Q 013823 282 AS-----------------VG----------SNTKLTLSGILNFIDGLWSSCG------------DERIIVFTTNHKERI 322 (436)
Q Consensus 282 ~~-----------------~~----------~~~~~~~s~LL~~ldg~~~~~~------------~~~ivI~TTN~~~~l 322 (436)
.. .. .......--|++..|++..... ..+-+|+|+|..+..
T Consensus 393 ~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks~~Piv~~cndr~~p 472 (871)
T KOG1968|consen 393 VRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPLVCTCNDRNLP 472 (871)
T ss_pred cccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHhccCCeEEEecCCCCc
Confidence 10 00 0011122335666676644100 124588999987766
Q ss_pred CccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
..-.+. |-+.-|+|+.|+.+.+..-+..++...
T Consensus 473 ~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se 505 (871)
T KOG1968|consen 473 KSRALS--RACSDLRFSKPSSELIRSRIMSICKSE 505 (871)
T ss_pred cccchh--hhcceeeecCCcHHHHHhhhhhhhccc
Confidence 653333 555778999999998776666665543
No 280
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.74 E-value=0.0012 Score=60.06 Aligned_cols=32 Identities=41% Similarity=0.634 Sum_probs=27.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR 277 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r 277 (436)
++.++|.||+|+|||++++.+|+.++..+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~ 35 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEEC
Confidence 45699999999999999999999998665443
No 281
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.73 E-value=0.0013 Score=61.21 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=24.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++..+-++++||||||||+++..+|...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56777779999999999999999887654
No 282
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.73 E-value=0.01 Score=58.89 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=38.4
Q ss_pred cccc-cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 212 DTLA-MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 212 ~~i~-g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+++. +++++++.+.+.+...+... ....+-++|+|+.|+|||++.+.|...+|-
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~ 102 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGD 102 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhCh
Confidence 4443 35566777766665444321 344567899999999999999999998883
No 283
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.70 E-value=0.0012 Score=61.84 Aligned_cols=24 Identities=33% Similarity=0.693 Sum_probs=22.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+++.||||+|||++|+.||..+|+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~ 25 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL 25 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999999984
No 284
>PRK14528 adenylate kinase; Provisional
Probab=96.69 E-value=0.0013 Score=60.46 Aligned_cols=26 Identities=31% Similarity=0.675 Sum_probs=23.4
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.+++.||||+|||++++.+|..+|+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~ 28 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIP 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999998843
No 285
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.68 E-value=0.0014 Score=57.12 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=30.9
Q ss_pred cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 216 MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 216 g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|.....+.+.+.+.... .....+||+|+|||||+++|++|....+
T Consensus 2 G~S~~~~~l~~~l~~~a-----------~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLA-----------KSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHH-----------CSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHh-----------CCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 33444555555555333 2346799999999999999999998766
No 286
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.68 E-value=0.0013 Score=61.93 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=23.2
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
++++||||+|||++++.||..++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~ 27 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIP 27 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999999943
No 287
>PF05729 NACHT: NACHT domain
Probab=96.66 E-value=0.0014 Score=57.79 Aligned_cols=25 Identities=40% Similarity=0.693 Sum_probs=22.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|-++|+|+||+|||++++.++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 3578999999999999999998776
No 288
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.66 E-value=0.00089 Score=63.34 Aligned_cols=23 Identities=48% Similarity=0.846 Sum_probs=20.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
+.-+|+||+||+|||++|+.+++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 34599999999999999999874
No 289
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.65 E-value=0.0015 Score=58.92 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=26.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKDR 277 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r 277 (436)
..++|.|+||||||++++.+|..+|..+.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3588999999999999999999999665543
No 290
>PRK08233 hypothetical protein; Provisional
Probab=96.63 E-value=0.0014 Score=59.27 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.8
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.+.|+||+||||+|+.||..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 466789999999999999999986
No 291
>PRK06547 hypothetical protein; Provisional
Probab=96.60 E-value=0.0021 Score=58.55 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=26.5
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
..+.-|++.||+|||||++++.+|+.++....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~ 44 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLV 44 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 34556889999999999999999999885543
No 292
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.60 E-value=0.0018 Score=60.80 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=25.4
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++..+-++++||||||||+++..+|.+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666779999999999999999999776
No 293
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.60 E-value=0.0018 Score=58.73 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-++|.|+||+||||+++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999886
No 294
>PRK13764 ATPase; Provisional
Probab=96.60 E-value=0.0022 Score=69.02 Aligned_cols=26 Identities=38% Similarity=0.787 Sum_probs=24.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+++|+.||||+||||+++|++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999999886
No 295
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.59 E-value=0.0016 Score=59.11 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
-+++.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998763
No 296
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0016 Score=58.79 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.7
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
+++.|.|||||||+++.++ ++|..
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~ 26 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYK 26 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCc
Confidence 6899999999999999999 88843
No 297
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.57 E-value=0.0016 Score=63.16 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=24.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++....+|++||||||||+++..+|..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5666777999999999999999988765
No 298
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.56 E-value=0.002 Score=62.63 Aligned_cols=54 Identities=22% Similarity=0.405 Sum_probs=39.5
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+.+++++...+...+.+.+.+.... ...+.+++.||+|+|||++++++..++..
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v-----------~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV-----------RGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH-----------HTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cccHhhccCchhhHHHHHHHHhhcc-----------ccceEEEEECCCccccchHHHHHhhhccc
Confidence 4488888887777766666555322 12467999999999999999999887653
No 299
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.56 E-value=0.0013 Score=58.10 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=20.5
Q ss_pred EeCCCCCChhHHHHHHHHHhcc
Q 013823 251 LYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 251 L~GPpGtGKT~la~aiA~~l~~ 272 (436)
|.||||+|||++|+.||..+|+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~ 22 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL 22 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS
T ss_pred CcCCCCCChHHHHHHHHHhcCc
Confidence 5799999999999999999993
No 300
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.55 E-value=0.0017 Score=61.84 Aligned_cols=26 Identities=23% Similarity=0.590 Sum_probs=23.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
-++|.||||+||||+|+.+|+.+|+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~ 33 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLK 33 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 38999999999999999999999943
No 301
>PRK04040 adenylate kinase; Provisional
Probab=96.54 E-value=0.0019 Score=59.72 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=22.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.-++++|+|||||||+++.++..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999999
No 302
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.52 E-value=0.0063 Score=58.08 Aligned_cols=27 Identities=41% Similarity=0.571 Sum_probs=24.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...|-.++||+|||||.+++++|..+|
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG 57 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALG 57 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhC
Confidence 346778999999999999999999999
No 303
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.52 E-value=0.0022 Score=61.33 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++....+|++||||||||+++..++.+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 6787888999999999999999876643
No 304
>PRK14526 adenylate kinase; Provisional
Probab=96.51 E-value=0.0019 Score=60.78 Aligned_cols=25 Identities=32% Similarity=0.697 Sum_probs=22.8
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
++|.||||+||||+++.||..++..
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~ 27 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYY 27 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999998843
No 305
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.51 E-value=0.0039 Score=57.93 Aligned_cols=25 Identities=48% Similarity=0.759 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+..++.||||||||++++.++..+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~ 43 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALE 43 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999887665
No 306
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.01 Score=65.38 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=40.0
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-.+|-|+|-++-.+.+++.+.+ .-+..-+|.|+||+|||.++..+|...-
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHh
Confidence 3588899998888887776652 2345678999999999999999998765
No 307
>PRK04182 cytidylate kinase; Provisional
Probab=96.49 E-value=0.002 Score=58.18 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=24.9
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
++|.|+||||||++++.+|..+|.++.+
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7899999999999999999999965544
No 308
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.004 Score=69.35 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=39.5
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCC-CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.|+|+++....|.+.+..... .++.+ +.-.+||.||.|+|||-||+|+|..+-
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F 616 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF 616 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc
Confidence 478888888888877764332 11222 344589999999999999999999875
No 309
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.47 E-value=0.002 Score=58.54 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.4
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
+|++||||||||+++..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999887654
No 310
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.44 E-value=0.0027 Score=59.99 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=24.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-++++||||+|||+++..+|.+.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666778999999999999999998754
No 311
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.44 E-value=0.0026 Score=58.46 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=23.5
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
....+++.||+|+||||+++++++.+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 346799999999999999999998764
No 312
>PRK06851 hypothetical protein; Provisional
Probab=96.41 E-value=0.014 Score=59.38 Aligned_cols=78 Identities=24% Similarity=0.328 Sum_probs=45.8
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
..+-|+|.||||||||++++.++.++...-.....--|..+. +.||++.- .+-.+-|+..+.|..++|
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP----------dslD~viI--Pel~~ai~d~t~ph~~~P 280 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP----------DSLDMVII--PELNFAIFDSTAPHEYFP 280 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC----------CCcceEEe--ccCCEEEEeCCCCcccCC
Confidence 346699999999999999999999874211111111111011 12333321 122456777777777877
Q ss_pred cccCCCceeEEEEc
Q 013823 325 ALLRPGRMDVHINM 338 (436)
Q Consensus 325 AllRpGR~d~~I~~ 338 (436)
.. || |..|.+
T Consensus 281 ~~--~g--~e~i~l 290 (367)
T PRK06851 281 SR--EG--DEIIDM 290 (367)
T ss_pred CC--Cc--ceeeec
Confidence 44 66 677766
No 313
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.40 E-value=0.0033 Score=72.75 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=63.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc--------------hhhcccCCCCCCC-------------------------C
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV--------------EMKDRQNDGASVG-------------------------S 286 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~--------------~~~~r~~~~~~~~-------------------------~ 286 (436)
.+++||-|.||.|||+|+.|+|+..|- +++....+....+ -
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 478999999999999999999999991 2222111111000 0
Q ss_pred Ccceeeccee-----------ecccCcccCCCCeEEEEEecCCcC------CCCccccCCCceeEEEEcCCCCHHHHHHH
Q 013823 287 NTKLTLSGIL-----------NFIDGLWSSCGDERIIVFTTNHKE------RIDPALLRPGRMDVHINMSYCTVHGFKVL 349 (436)
Q Consensus 287 ~~~~~~s~LL-----------~~ldg~~~~~~~~~ivI~TTN~~~------~lD~AllRpGR~d~~I~~~~p~~~~r~~i 349 (436)
.++.++.+|- -++|.... +..+..|++|-|.-+ .||..++- || .+|.|...+.+....|
T Consensus 1623 aSQSVlEGLNacLDhR~eayIPEld~~f~-~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~~d~lt~dDi~~I 1698 (4600)
T COG5271 1623 ASQSVLEGLNACLDHRREAYIPELDKTFD-VHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKMDGLTTDDITHI 1698 (4600)
T ss_pred hHHHHHHHHHHHHhhccccccccccceee-ccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEEecccccchHHHH
Confidence 0111122211 12222221 233455666666432 58999998 99 5678888888887777
Q ss_pred HHHHhc
Q 013823 350 ASNYLG 355 (436)
Q Consensus 350 ~~~~l~ 355 (436)
+.+.+.
T Consensus 1699 a~~~yp 1704 (4600)
T COG5271 1699 ANKMYP 1704 (4600)
T ss_pred HHhhCC
Confidence 777664
No 314
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.40 E-value=0.0018 Score=57.98 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=19.2
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
|.|.|+||||||||+++|+.. |..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~ 25 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYP 25 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-E
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCe
Confidence 689999999999999999998 733
No 315
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.39 E-value=0.0025 Score=57.09 Aligned_cols=27 Identities=33% Similarity=0.683 Sum_probs=24.0
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
+.++|+||+|||++++.+|+.+|.+..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~ 29 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLI 29 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 679999999999999999999995544
No 316
>PF13173 AAA_14: AAA domain
Probab=96.39 E-value=0.0029 Score=54.35 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.++|+||+|||||++++.++..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999998764
No 317
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.37 E-value=0.0026 Score=58.43 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.-+.|.||+|+||||+++.|+..++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 357899999999999999999988743
No 318
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.37 E-value=0.0026 Score=62.73 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh-c
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL-S 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l-~ 271 (436)
.-++|.|||||||||+|+.++..+ +
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~ 28 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPK 28 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCC
Confidence 457899999999999999999998 5
No 319
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.35 E-value=0.0032 Score=58.41 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.9
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++.-+.|.||+|+|||+|++.+++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446688999999999999999999875
No 320
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.34 E-value=0.0026 Score=61.22 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.3
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++|.|+||+||||+|+++|..+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 321
>PRK06696 uridine kinase; Validated
Probab=96.33 E-value=0.0063 Score=57.58 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=23.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-|.+.|+||+||||+|+.|+..++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44578899999999999999999984
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.33 E-value=0.0054 Score=59.73 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=36.2
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++++++..++..+.+.+.+. .....+++.||+|+||||+++++..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 467888888887776644332 1123488999999999999999987764
No 323
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0027 Score=58.91 Aligned_cols=23 Identities=35% Similarity=0.639 Sum_probs=21.9
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++|.|+||+|||++|+-+|++|.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999997
No 324
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.33 E-value=0.0029 Score=56.07 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.9
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
+++.|+||+|||++++.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999988
No 325
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.32 E-value=0.0035 Score=59.66 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.7
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++.+..++++||||||||+++..++.+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 6777788999999999999999998754
No 326
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=0.03 Score=57.88 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=87.5
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc-------------
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD------------- 276 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~------------- 276 (436)
.=+++.|-+..+..+.+++...+.. ..++++.+.|-||||||.+..-+-..+......
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE 218 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc
Confidence 3467888888888887777655532 345678899999999999887655444311100
Q ss_pred ---------------ccCCCCCC--------C-CCcceeecceeecccCcccC--------------CCCeEEEEEecCC
Q 013823 277 ---------------RQNDGASV--------G-SNTKLTLSGILNFIDGLWSS--------------CGDERIIVFTTNH 318 (436)
Q Consensus 277 ---------------r~~~~~~~--------~-~~~~~~~s~LL~~ldg~~~~--------------~~~~~ivI~TTN~ 318 (436)
....+.+. + ...+.++--.|++||-+... .+..+++|+.+|.
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANs 298 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANS 298 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhh
Confidence 00000000 0 01122344456777765322 2345788999999
Q ss_pred cCCCCccccC----CCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 319 KERIDPALLR----PGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 319 ~~~lD~AllR----pGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.+.-|..|.| -+.-...+.|++.+.++..+|+..-+...
T Consensus 299 lDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 299 LDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred hhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 8877766643 23345678999999999999999887654
No 327
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.32 E-value=0.0033 Score=60.89 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=25.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++..+.+|++|+||||||+++..++...
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~ 47 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEG 47 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHH
Confidence 57778889999999999999998887654
No 328
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0018 Score=65.87 Aligned_cols=32 Identities=38% Similarity=0.548 Sum_probs=28.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR 277 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r 277 (436)
+..+||.||.|+|||.||+.+|.-+++++.-.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIc 257 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAIC 257 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEe
Confidence 35799999999999999999999999776544
No 329
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.30 E-value=0.0046 Score=68.33 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=42.4
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..|++++|.....+.+.+.+..... ....+||+|+||||||++|++|.....
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 5789999999988888887774332 235799999999999999999987654
No 330
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.30 E-value=0.0032 Score=58.62 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+.-+++.|+||+|||++++.+|..++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~ 29 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAI 29 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346889999999999999999999983
No 331
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.30 E-value=0.0024 Score=60.37 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=23.5
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
|++.+..+|+.||||||||+|+..++.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLY 41 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHH
Confidence 677777899999999999999987664
No 332
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.30 E-value=0.0034 Score=62.31 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=23.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++++|+.||+|+||||+++++++++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 47899999999999999999998764
No 333
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.28 E-value=0.005 Score=61.58 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-++|.||||+||||++..+|..+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45688999999999999999998874
No 334
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=96.28 E-value=0.0014 Score=65.98 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=29.3
Q ss_pred EEEEEecCCcC-------------CCCccccCCCceeEEEEc-CCCCHHHHHHHHHHHhccc
Q 013823 310 RIIVFTTNHKE-------------RIDPALLRPGRMDVHINM-SYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 310 ~ivI~TTN~~~-------------~lD~AllRpGR~d~~I~~-~~p~~~~r~~i~~~~l~~~ 357 (436)
.-|++++|... .++++|+. |||..+.+ ..|+.+.=..+.++.+...
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 46888988665 47889999 99988765 6777776677777777654
No 335
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.27 E-value=0.0038 Score=59.09 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=24.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++....++++||||||||+++..++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHH
Confidence 5677777999999999999999988754
No 336
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.26 E-value=0.0036 Score=58.44 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.5
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.+.||+|+|||||+++|++.++
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 366899999999999999999876
No 337
>PLN02674 adenylate kinase
Probab=96.25 E-value=0.0038 Score=60.01 Aligned_cols=27 Identities=26% Similarity=0.612 Sum_probs=24.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+..++|.||||+||+|.++.||..+++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~ 57 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCL 57 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 355899999999999999999999993
No 338
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.24 E-value=0.0029 Score=58.48 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=21.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|.+.||||+||||+|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999997
No 339
>PRK01184 hypothetical protein; Provisional
Probab=96.24 E-value=0.0033 Score=57.40 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
-++|.||||+||||+++ ++.++|..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~ 27 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIP 27 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCc
Confidence 47899999999999987 78888843
No 340
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.23 E-value=0.0056 Score=63.79 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 220 LKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 220 ~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+.+.+.+...+.......... ..|.-++|+||||+|||+++..+|..+.
T Consensus 70 ~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 70 VIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred HHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34555555554443221111111 3467799999999999999999998775
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.23 E-value=0.0078 Score=58.89 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=23.1
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++-++|.||||+||||++..+|..+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 356788899999999999999998774
No 342
>PRK04328 hypothetical protein; Provisional
Probab=96.21 E-value=0.0041 Score=59.97 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=23.9
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++....+|++||||||||+|+..++.+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5777778999999999999999877654
No 343
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.21 E-value=0.0048 Score=65.91 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=40.9
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.+|++++|.....+.+.+.+..+-. ....+||+|++||||+++|++|-+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~-----------s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR-----------SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999888888777664332 2357999999999999999999876
No 344
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.21 E-value=0.0044 Score=56.13 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-+.|.|+||+|||++++++|..+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999884
No 345
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.21 E-value=0.0076 Score=61.00 Aligned_cols=30 Identities=37% Similarity=0.706 Sum_probs=28.2
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+|.+..+++||||.||||+++..+-+.++
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~ 287 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 287 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHT
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhC
Confidence 678888999999999999999999999998
No 346
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.20 E-value=0.004 Score=62.17 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++..+-+++|||||||||+|+..++...
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56767779999999999999988776554
No 347
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.20 E-value=0.0037 Score=57.08 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.-+.+.||+|+|||++++++++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 347899999999999999999998853
No 348
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.20 E-value=0.0051 Score=46.19 Aligned_cols=23 Identities=43% Similarity=0.713 Sum_probs=20.4
Q ss_pred eeeEeCCCCCChhHHHHHHHHHh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l 270 (436)
..+|+||.|+|||++..||.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999987655
No 349
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.20 E-value=0.0035 Score=56.81 Aligned_cols=22 Identities=36% Similarity=0.794 Sum_probs=20.1
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
++|.|+||+||||+++.++.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 350
>PRK14529 adenylate kinase; Provisional
Probab=96.17 E-value=0.0039 Score=59.17 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.7
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
++|.||||+||||+++.||..+++..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~ 28 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAH 28 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 78999999999999999999999544
No 351
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.16 E-value=0.0037 Score=56.71 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+-++|.||+|+|||++++.|++.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 3478999999999999999999765
No 352
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.16 E-value=0.006 Score=65.18 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=39.1
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..+|++++|.....+.+.+.+..... ....+||+|++||||+++|+++-...
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s 251 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRS 251 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhC
Confidence 35789999988877777666653321 23569999999999999999985543
No 353
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.14 E-value=0.005 Score=58.67 Aligned_cols=28 Identities=32% Similarity=0.223 Sum_probs=22.3
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++...-+++.||||||||+++..++..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4666677999999999999997655543
No 354
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.12 E-value=0.0075 Score=63.29 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=44.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...+.+|++|+|......++++.+...- +....+|++|.+||||..+|++|=+...
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~ 293 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSP 293 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCc
Confidence 3455689999999888887777655322 3456799999999999999999987665
No 355
>PRK12338 hypothetical protein; Provisional
Probab=96.12 E-value=0.0042 Score=61.84 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.5
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
|.-+++.|+||||||++|+++|..+|+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~ 30 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNI 30 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 456889999999999999999999983
No 356
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.11 E-value=0.0068 Score=61.64 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+++.||+|+||||+++++++++.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999998874
No 357
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.11 E-value=0.0045 Score=65.54 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=24.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
|++..+.+|+.||||||||+|+..++.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~ 43 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLY 43 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 678888899999999999999998753
No 358
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.10 E-value=0.0057 Score=65.27 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=42.3
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+|++++|.....+.+.+.+..+-. ....+||+|++||||+++|++|-+...
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~-----------~~~pVLI~GE~GTGKe~lA~~IH~~S~ 260 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR-----------SDATVLILGESGTGKELVAQAIHQLSG 260 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCcCHHHHHHHHHHhcC
Confidence 36799999999888888777764332 236799999999999999999987653
No 359
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.10 E-value=0.0047 Score=58.53 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++...-+.|+||||||||+++..+|..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666666899999999999999999854
No 360
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.09 E-value=0.0044 Score=57.32 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.8
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.|.||+|+||||++++|++.++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999873
No 361
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.08 E-value=0.0044 Score=57.61 Aligned_cols=24 Identities=46% Similarity=0.803 Sum_probs=21.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+++.||+|+||||++++++.++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 378999999999999999998875
No 362
>PRK13975 thymidylate kinase; Provisional
Probab=96.07 E-value=0.0047 Score=56.83 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.-+.|.||+|+||||+++.+|+.++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34789999999999999999999984
No 363
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.04 E-value=0.0053 Score=61.44 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.3
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.++|+.||+|+||||++++++.++.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998763
No 364
>PRK05973 replicative DNA helicase; Provisional
Probab=96.03 E-value=0.0057 Score=58.54 Aligned_cols=29 Identities=28% Similarity=0.102 Sum_probs=24.3
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|+++..-+|+.|+||+|||+++..+|.+.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56666779999999999999998887654
No 365
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.03 E-value=0.0055 Score=57.18 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-+.+.||+|||||||+++|+..++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999999983
No 366
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.03 E-value=0.0049 Score=57.65 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.4
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHH
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.++-++|.||||+|||+++++++..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456889999999999999999864
No 367
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.02 E-value=0.0081 Score=59.09 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=22.5
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++.++|.||+|+||||++..+|..+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999998763
No 368
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.02 E-value=0.0094 Score=62.23 Aligned_cols=51 Identities=27% Similarity=0.412 Sum_probs=41.1
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.-+|+++++.+...+.+...+. .|.| +|+.||.|+|||+...++-++++..
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 3478999999998888776554 3466 6678999999999999999998833
No 369
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.96 E-value=0.0061 Score=60.98 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++..+-+++|||||||||+|+..+|.+.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~ 79 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEA 79 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666678999999999999999877544
No 370
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.96 E-value=0.0064 Score=56.66 Aligned_cols=26 Identities=46% Similarity=0.802 Sum_probs=23.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.++|+||+|+|||+|++.+.+.+.
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 46799999999999999999999884
No 371
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.94 E-value=0.0066 Score=57.12 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=24.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-+.|+||||||||+++..+|...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 56666779999999999999999998754
No 372
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.91 E-value=0.011 Score=64.65 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=29.0
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 214 LAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 214 i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
-.+++.+++.|...+. ....+|++||||||||+++.++...+
T Consensus 156 ~~ln~~Q~~Av~~~l~---------------~~~~~lI~GpPGTGKT~t~~~ii~~~ 197 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---------------SKDLFLIHGPPGTGKTRTLVELIRQL 197 (637)
T ss_pred CCCCHHHHHHHHHHhc---------------CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456777776644221 12358899999999999888877654
No 373
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.90 E-value=0.006 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.8
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.|.||+|+|||++++.|+..+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 57899999999999999999865
No 374
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.89 E-value=0.0069 Score=60.62 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=23.1
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.++.+++.||+|+|||+++++++.++
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34789999999999999999999865
No 375
>PLN02459 probable adenylate kinase
Probab=95.88 E-value=0.0076 Score=58.38 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=23.2
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.++|.||||+|||++++.+|..+++.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~ 56 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVP 56 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 37889999999999999999999943
No 376
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.012 Score=60.17 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 218 PELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 218 ~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++++.+.+.+...+..+..+ ...++-++|.||+|+||||++..||..+.
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 345666666655544432211 12346789999999999999999998764
No 377
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.012 Score=60.38 Aligned_cols=27 Identities=41% Similarity=0.678 Sum_probs=23.4
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++-++|+||+|+||||++.-+|..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999998764
No 378
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.85 E-value=0.0052 Score=55.30 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.9
Q ss_pred eCCCCCChhHHHHHHHHHhcch
Q 013823 252 YGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 252 ~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.||||||||++++++|+.++..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~ 22 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAA 22 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCe
Confidence 4999999999999999999843
No 379
>PF13479 AAA_24: AAA domain
Probab=95.84 E-value=0.0044 Score=58.30 Aligned_cols=20 Identities=50% Similarity=1.042 Sum_probs=17.7
Q ss_pred ceeeEeCCCCCChhHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAM 266 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~ai 266 (436)
--+|||||||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 35899999999999999876
No 380
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=95.84 E-value=0.053 Score=57.49 Aligned_cols=53 Identities=34% Similarity=0.631 Sum_probs=38.4
Q ss_pred Cccccc-ChhHHHHHHHHHHHHHhhHHHHHHhC-CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 211 FDTLAM-DPELKQMILDDLDRFLRRKEFYRRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 211 ~~~i~g-~~~~k~~i~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++++.+ ++++...+.+.+-..+ .| ..+...+.||||-|+|||+++..|.+.+|
T Consensus 201 L~~~~~~d~el~~ll~~i~g~~l--------~g~~~~~k~~~l~G~G~nGKstf~~li~~llG 255 (517)
T COG3378 201 LDRVAGGDPELRNLLQRIIGASL--------TGRVSEQKLFWLYGPGGNGKSTFVDLISNLLG 255 (517)
T ss_pred HHHhhcCCHHHHHHHHHHHhhee--------cCcccceeEEEEEcCCCCChHHHHHHHHHHhc
Confidence 556655 6666665555443222 22 34667899999999999999999999999
No 381
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.83 E-value=0.006 Score=56.76 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=23.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+-++|.||+|+||||.+.-+|..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 46689999999999999999998876
No 382
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.83 E-value=0.018 Score=59.98 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=25.5
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.|.-++++|+||||||+++..+|..+++
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~ 281 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGI 281 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4677999999999999999999999984
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=95.82 E-value=0.014 Score=58.78 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=22.8
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-++|.||||+||||++..+|..+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46689999999999999999998764
No 384
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.81 E-value=0.0061 Score=50.98 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.3
Q ss_pred CcceeeEeCCCCCChhHHHHHHH
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMA 267 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA 267 (436)
....++|.||+|+|||+|++++.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34568999999999999999987
No 385
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.81 E-value=0.0072 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.0
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+++.|++|+|||+|++.+++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 688999999999999999975543
No 386
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.80 E-value=0.0068 Score=54.66 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+-.+++.||+|||||+|.+++|+...
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccC
Confidence 34589999999999999999998654
No 387
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.0073 Score=53.95 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
--+.+.||||+|||+++.-+|+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4588999999999999999999886
No 388
>PLN02199 shikimate kinase
Probab=95.79 E-value=0.016 Score=57.03 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=27.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
.+.++|.|++|||||++++.+|+.+|..+.+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fID 132 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 132 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4689999999999999999999999965543
No 389
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.77 E-value=0.0072 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=21.1
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+.|+||||||++++.|+..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999974
No 390
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.76 E-value=0.012 Score=59.13 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=24.1
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++++|+.||+|+||||+++|+..++.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 347899999999999999999998775
No 391
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.75 E-value=0.0092 Score=56.32 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=23.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++...-+++.||||+|||+++..+|.+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~ 39 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQ 39 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666777999999999999999888754
No 392
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.74 E-value=0.016 Score=57.28 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.|--+++.||+|||||++|..+|..++..
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45568999999999999999999999844
No 393
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.73 E-value=0.0082 Score=59.72 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.5
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-++++||||||||+++..+|...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56666678999999999999999988654
No 394
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.72 E-value=0.0042 Score=53.55 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=23.5
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+...-+.+.||+|+|||+|+++|++...
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 3445688999999999999999988664
No 395
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.71 E-value=0.0055 Score=61.77 Aligned_cols=27 Identities=37% Similarity=0.730 Sum_probs=22.4
Q ss_pred Ccce--eeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRG--YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg--~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...| +.|-||+||||||+.++||+.-.
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455 66999999999999999998654
No 396
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.0063 Score=66.17 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=22.0
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+||.|-||||||.|.+.+++.+.
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aP 344 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAP 344 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCC
Confidence 389999999999999999998776
No 397
>PRK06761 hypothetical protein; Provisional
Probab=95.69 E-value=0.008 Score=59.00 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=23.0
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+-+++.||||+||||+++.++..+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4588999999999999999999987
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.0092 Score=60.83 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
+..++|.||+|+|||+++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999865
No 399
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.68 E-value=0.015 Score=59.43 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+|+.||+|+||||+++++..++.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998874
No 400
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.67 E-value=0.0098 Score=56.60 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=25.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|+++..-++|.||||+|||+++..+|...
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67777779999999999999999887655
No 401
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.66 E-value=0.016 Score=61.42 Aligned_cols=49 Identities=31% Similarity=0.468 Sum_probs=38.6
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+++++++.++..+.+...+. .++| +|+.||+|+||||+..++.+++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4588999988888877765433 2355 68999999999999998877775
No 402
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.65 E-value=0.0088 Score=53.09 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.+|+||.||+|+|||+++.++...
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 479999999999999999888775
No 403
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.021 Score=58.94 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=21.8
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
++-++|.||+|+||||++..+|..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999999765
No 404
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.63 E-value=0.0091 Score=53.88 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.6
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+++.||||+|||+++..+|..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998764
No 405
>PRK10867 signal recognition particle protein; Provisional
Probab=95.63 E-value=0.014 Score=60.77 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhH-HHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 220 LKQMILDDLDRFLRRK-EFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 220 ~k~~i~~~l~~~l~~~-~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+++.+.+.+...+... ..+ ......|.-+++.||||+||||++.-+|..+.
T Consensus 74 ~~~~v~~el~~~l~~~~~~~-~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 74 VIKIVNDELVEILGGENSEL-NLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred HHHHHHHHHHHHhCCCccee-eecCCCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4455555555444321 111 11223356789999999999998888887653
No 406
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.59 E-value=0.016 Score=61.88 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=41.4
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+++++|.....+.+.+.+...- +....+||+|++||||+++|++|.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 57889999988888888776432 2346799999999999999999988654
No 407
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.59 E-value=0.0097 Score=54.92 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.9
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+.|+||||||++|+.|+..++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999984
No 408
>PRK13808 adenylate kinase; Provisional
Probab=95.57 E-value=0.0094 Score=59.78 Aligned_cols=24 Identities=29% Similarity=0.690 Sum_probs=22.8
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
++|+||||+|||++++.||..+|+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999994
No 409
>PRK10536 hypothetical protein; Provisional
Probab=95.57 E-value=0.0095 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.276 Sum_probs=20.2
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.||+|||||+||.|+|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999984
No 410
>PTZ00301 uridine kinase; Provisional
Probab=95.57 E-value=0.0096 Score=55.99 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
+.+.||||+||||+|+.|+..+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 5689999999999999998876
No 411
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.55 E-value=0.029 Score=53.28 Aligned_cols=26 Identities=35% Similarity=0.554 Sum_probs=22.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-+.|.||+|+|||||++.|++.+.
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44577899999999999999999876
No 412
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.55 E-value=0.16 Score=52.32 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=48.6
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCC-------------------CCcHHHHHhhhhcCCCCHHHH
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKS-------------------HSLFGEIEGLIQSTDVTPAEV 381 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~-------------------~~~~~~i~~l~~~~~~tpaei 381 (436)
.|..|| |+|.-..|.++-++.+.-+......|...... .....++...+..-+--.-|+
T Consensus 198 ~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDL 275 (431)
T PF10443_consen 198 PLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDL 275 (431)
T ss_pred hHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHH
Confidence 455666 66888999999999998888777777653100 123445555544433222233
Q ss_pred HHHH---hccCCHHHHHHHHHHH
Q 013823 382 AEEL---MKADDADVALEGLVNF 401 (436)
Q Consensus 382 ~~~l---~~~~~~~~al~~l~~~ 401 (436)
.-+. ....+++.|++.+++.
T Consensus 276 e~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 276 EFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 3222 2455888898888864
No 413
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.0098 Score=54.52 Aligned_cols=25 Identities=32% Similarity=0.644 Sum_probs=22.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
--+.+.||.|+|||||.+.||+.+.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~ 53 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLR 53 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccC
Confidence 3477899999999999999998776
No 414
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.54 E-value=0.011 Score=50.77 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=24.9
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
+...-++|+|+=|+|||++++++|..+|...
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~ 43 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE 43 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 3445689999999999999999999998554
No 415
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.53 E-value=0.017 Score=56.62 Aligned_cols=47 Identities=34% Similarity=0.674 Sum_probs=36.5
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
....+|+.+..++-+++ +. ..++| +|+.||.|+||||...||-+++|
T Consensus 103 ~~i~~~e~LglP~i~~~-~~------------------~~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 103 SKIPTLEELGLPPIVRE-LA------------------ESPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred ccCCCHHHcCCCHHHHH-HH------------------hCCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 34468999877776665 31 23567 67789999999999999999998
No 416
>PRK07667 uridine kinase; Provisional
Probab=95.53 E-value=0.0098 Score=55.02 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-|.+.|+||+|||++++.|+..++
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999875
No 417
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.52 E-value=0.011 Score=49.60 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++++++||+|+|||+++.+.+..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999999988887765
No 418
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.52 E-value=0.01 Score=60.62 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.3
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.|++||||||||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 88999999999999999998775
No 419
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.51 E-value=0.013 Score=51.98 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=28.2
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR 277 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r 277 (436)
+.+-.+++-|+.||||||++++++.+++.++.+.
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg 43 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDG 43 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCccccc
Confidence 3444678899999999999999999999776544
No 420
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.51 E-value=0.01 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+-+.||+|+||||+|+.|++.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999884
No 421
>PRK09354 recA recombinase A; Provisional
Probab=95.49 E-value=0.012 Score=59.38 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=23.5
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++..+-+++|||||||||+|+..++...
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~ 84 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEA 84 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666678999999999999998776443
No 422
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.48 E-value=0.011 Score=59.08 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=24.6
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++.+.-++++||||||||+++..+|-..
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 56766778999999999999999988654
No 423
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.48 E-value=0.01 Score=54.52 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
-|.|.|+||+||||+++.+++.++.
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999863
No 424
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.48 E-value=0.0086 Score=60.10 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=20.9
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.|.||+||||||+.+.||+...
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999998655
No 425
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.47 E-value=0.011 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.1
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.|.||+|+||||+++.|++.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999984
No 426
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.47 E-value=0.018 Score=59.73 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-++|.||+|+||||++..+|..+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998774
No 427
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.46 E-value=0.011 Score=61.02 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=25.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.+-|.|.|++|||||||+++||..+|..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4669999999999999999999998843
No 428
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.0091 Score=57.00 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.3
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+.||+|||||||.+.||+...
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999998765
No 429
>PRK08356 hypothetical protein; Provisional
Probab=95.46 E-value=0.011 Score=54.67 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=20.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
-++|.||||+||||+|+.|+. .|.
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~-~g~ 30 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE-KGF 30 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCC
Confidence 377899999999999999964 674
No 430
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.43 E-value=0.012 Score=55.81 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=25.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
.-+.+.||||||||++++.||+.+|+.+.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~ 33 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYL 33 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 45788999999999999999999985544
No 431
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.42 E-value=0.025 Score=55.40 Aligned_cols=53 Identities=21% Similarity=0.170 Sum_probs=40.8
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.|.|+.-+++.|...+..++.++. -..|--+-|||+|||||+..++.||+.+-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 477888899999998887776541 11223345899999999999999999775
No 432
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.39 E-value=0.012 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+|+.||||+|||++|..++..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 378999999999999999998765
No 433
>PLN02165 adenylate isopentenyltransferase
Probab=95.39 E-value=0.014 Score=58.52 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=24.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.-++|.||+|+|||+|+..||..++.+
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~e 70 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSE 70 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCc
Confidence 458899999999999999999999843
No 434
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.37 E-value=0.031 Score=54.06 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.+.||.|||||||.++|++.+.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3477899999999999999999876
No 435
>PRK10436 hypothetical protein; Provisional
Probab=95.36 E-value=0.024 Score=59.55 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=37.9
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+|+++++.+...+.+.+.+. .+.| +|+.||.|+||||+..++-.+++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~---------------~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ---------------QPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH---------------hcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 3588999998888777765443 2344 78899999999999988877775
No 436
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.36 E-value=0.0097 Score=49.83 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=18.6
Q ss_pred eeEeCCCCCChhHHHHHHHH
Q 013823 249 YLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~ 268 (436)
++|.|+||+|||||++++.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999985
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.34 E-value=0.012 Score=55.09 Aligned_cols=28 Identities=39% Similarity=0.629 Sum_probs=22.2
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
-+++.||+|||||.++-++|+.+|.++.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI 30 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVI 30 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEE
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEE
Confidence 3789999999999999999999995543
No 438
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.34 E-value=0.011 Score=55.40 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.8
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...-+.|.||+|+|||||+++|++.+.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 334588999999999999999998764
No 439
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.33 E-value=0.013 Score=59.24 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=23.6
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-..|+||||||||.|+..+|-..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~ 150 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTT 150 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHH
Confidence 56666668899999999999999887543
No 440
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.32 E-value=0.014 Score=54.06 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..|.-+++.||||+|||+++..+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 456789999999999999999999987
No 441
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.32 E-value=0.014 Score=61.10 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=25.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-+||+||||+|||+|+..+|...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~ 104 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARL 104 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666779999999999999999998765
No 442
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.31 E-value=0.013 Score=59.47 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.2
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.|+.||||||||+|++.+|+.+.
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999998774
No 443
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.31 E-value=0.024 Score=61.16 Aligned_cols=48 Identities=29% Similarity=0.572 Sum_probs=38.2
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+++++++.++..+.+.+.+. .++| +|+.||+|+||||+..++.++++
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~---------------~~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH---------------KPQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH---------------hcCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999888887766443 2345 68999999999999988888876
No 444
>PTZ00202 tuzin; Provisional
Probab=95.30 E-value=0.033 Score=57.69 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=40.6
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|....+.+|-+....++...+. ......++-+.|.||+|||||++++.++..++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~----------~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLR----------RLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHh----------ccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4556778888888777766543 12233446678999999999999999998887
No 445
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.29 E-value=0.013 Score=58.51 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=23.4
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++..+-++++||||||||.|+..+|-.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 5666677899999999999999887753
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.29 E-value=0.019 Score=57.11 Aligned_cols=29 Identities=17% Similarity=0.494 Sum_probs=24.8
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+..+..+++.||+|+||||+++++++++.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 34557899999999999999999998764
No 447
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.28 E-value=0.014 Score=55.15 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.5
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
-+.+.||+||||||+++.||..++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~ 30 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAY 30 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 467899999999999999999998443
No 448
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.27 E-value=0.012 Score=59.41 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=24.2
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+..+|+.||+|+||||+++++++++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 457899999999999999999998775
No 449
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.27 E-value=0.015 Score=59.52 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=25.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+.+..-+||+||||+|||+|+..+|..+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 466666799999999999999999987653
No 450
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.27 E-value=0.016 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.7
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.+.-+.|.|+||+|||+++++|+..+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999987
No 451
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.26 E-value=0.017 Score=52.68 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.3
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.-+.+.|+||+|||+++++++..+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345578999999999999999999874
No 452
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.26 E-value=0.016 Score=56.04 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=23.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.-+++.||||||||+|++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 44899999999999999999998764
No 453
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.26 E-value=0.014 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.8
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
+.|+|+||+|||++++.+++ +|...
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~ 26 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV 26 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE
Confidence 67999999999999999998 77433
No 454
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.25 E-value=0.011 Score=63.28 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++++..+|+.||+|||||+|.+|||+...
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCc
Confidence 34555699999999999999999998654
No 455
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.24 E-value=0.019 Score=55.79 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=27.4
Q ss_pred EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.-||+||....-.. .+ +.-+..++++..+.++-..++..+....
T Consensus 130 ~kilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 130 SKILVTTRDRSVAG-SL---GGTDKVIELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp -EEEEEESCGGGGT-TH---HSCEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred cccccccccccccc-cc---cccccccccccccccccccccccccccc
Confidence 45677776543221 11 1226789999999999999999887654
No 456
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.24 E-value=0.016 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.|.||+|||++|+++...|.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999886
No 457
>PRK04132 replication factor C small subunit; Provisional
Probab=95.23 E-value=0.016 Score=64.91 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=35.0
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHH
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSL 262 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~l 262 (436)
.-.|.+|+||+|++.+++.|...+.. | ....+||+||||+||+..
T Consensus 12 k~RP~~f~dIiGqe~i~~~Lk~~i~~-----------~--~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 12 KYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------C--CCCeEEEECCCCCCcccc
Confidence 56789999999999999988776651 1 112378999999999753
No 458
>PRK05439 pantothenate kinase; Provisional
Probab=95.22 E-value=0.023 Score=56.61 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=21.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-|.+.||||+||||+|+.|+..++
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3477899999999999999998765
No 459
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.20 E-value=0.026 Score=58.76 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++.++|.||+|+||||++..||..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999987653
No 460
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.17 E-value=0.016 Score=58.18 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
+.++|.|+||||||+|++++++.++...
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 5789999999999999999999988443
No 461
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.14 E-value=0.016 Score=51.10 Aligned_cols=21 Identities=38% Similarity=0.765 Sum_probs=19.0
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-++|.||.|||||||+++|-+
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999865
No 462
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.13 E-value=0.034 Score=57.35 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
..++++.||||||||.++.+++.+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 367999999999999999998877
No 463
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.13 E-value=0.018 Score=58.20 Aligned_cols=25 Identities=40% Similarity=0.745 Sum_probs=22.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+|+.||+|+||||+.+++.+++.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4578999999999999999998765
No 464
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.11 E-value=0.017 Score=53.00 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=22.6
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
+.+.|++||||||+++.++++++...
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~ 27 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEV 27 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcc
Confidence 56899999999999999999877543
No 465
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.08 E-value=0.027 Score=58.53 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.|.-+++.||||+||||++..+|..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35678999999999999999998875
No 466
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.07 E-value=0.015 Score=55.10 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.1
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...-+.|.||+|+|||||+++|++.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344589999999999999999998764
No 467
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.07 E-value=0.016 Score=52.64 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..+.-+.|.||+|+|||+|+++|++..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344558899999999999999999865
No 468
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.07 E-value=0.014 Score=54.35 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+..-+.|.||+|+|||+|.++||+.+.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445588999999999999999998653
No 469
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.06 E-value=0.015 Score=54.22 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=22.7
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.-+.|.||+|+|||||+++||+.+.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334588999999999999999998653
No 470
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.017 Score=52.23 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=23.6
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
....-+.|.||+|+|||+|.++|++.+.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3445588999999999999999998764
No 471
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.06 E-value=0.021 Score=52.12 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=23.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+|-++|.||+|+|||+|++.|.....
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 47799999999999999999999875
No 472
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.06 E-value=0.018 Score=52.77 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=22.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
++-++|.||+|+||+++++.++...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999999886
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.06 E-value=0.019 Score=60.81 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++....+|+.||||||||+|+..++...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~ 287 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENA 287 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56777779999999999999998888754
No 474
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.06 E-value=0.015 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.3
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..-+.|.||+|+|||||+++||+.+.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999998653
No 475
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.016 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.8
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
+.-+.|.||.|+|||||+++||+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3447899999999999999999865
No 476
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.04 E-value=0.018 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.4
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
-+.++||||+|||++++.+++.+|.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~ 27 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGI 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3779999999999999999998774
No 477
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=95.04 E-value=0.038 Score=55.55 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=25.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++|.+|.+||-||--|||||+|.|+-+.+|
T Consensus 151 N~PKkRy~lFkGPvNsGKTTlAAAlLdL~g 180 (417)
T PF06431_consen 151 NIPKKRYWLFKGPVNSGKTTLAAALLDLCG 180 (417)
T ss_dssp TBTTB-EEEEE-STTSSHHHHHHHHHHHH-
T ss_pred CCCcceeEEEecCcCCchHHHHHHHHHhcC
Confidence 468889999999999999999999999887
No 478
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.016 Score=54.99 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
....-+.|.||+|+|||||+++||+.+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445688999999999999999998764
No 479
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.02 E-value=0.016 Score=55.25 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=22.7
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.-+.|.||+|+|||||+++|++.+.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 344588999999999999999998653
No 480
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.99 E-value=0.02 Score=61.08 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.4
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
|++..+-+|++|+||||||+|+..++.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~ 53 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLV 53 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 577778899999999999999987764
No 481
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.99 E-value=0.045 Score=48.91 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=22.9
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+.+||.+|+|+|||.++-.++.++.
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhhhhhccc
Confidence 357899999999999999998776665
No 482
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.99 E-value=0.015 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.8
Q ss_pred eeEeCCCCCChhHHHHHHHHH
Q 013823 249 YLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~ 269 (436)
+.|.||+|+|||+|.+++.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 678999999999999999764
No 483
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.97 E-value=0.017 Score=54.50 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.8
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999983
No 484
>PLN02796 D-glycerate 3-kinase
Probab=94.97 E-value=0.055 Score=54.48 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=21.1
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+-+.||+||||||++++|+..+.
T Consensus 103 IGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 103 IGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 66889999999999999999885
No 485
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.97 E-value=0.02 Score=61.51 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=25.8
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDR 277 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r 277 (436)
-+.|.|+||||||++++.+|+.++.++.+.
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~ 37 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADA 37 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 388999999999999999999999655443
No 486
>PRK13695 putative NTPase; Provisional
Probab=94.96 E-value=0.02 Score=51.79 Aligned_cols=22 Identities=41% Similarity=0.792 Sum_probs=20.2
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
++|.|+||+|||++++.+++.+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998875
No 487
>PTZ00035 Rad51 protein; Provisional
Probab=94.93 E-value=0.02 Score=57.76 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=24.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-+.++||||||||+++..+|...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 56666668899999999999999887654
No 488
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=94.93 E-value=0.018 Score=60.89 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=24.8
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++.+..+|++||.|||||+|.+.+|+...
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 45567899999999999999999987653
No 489
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.93 E-value=0.018 Score=54.35 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.4
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.+.-+.|.||+|+|||||+++|++..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34458899999999999999999865
No 490
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.93 E-value=0.51 Score=51.25 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=61.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhhcccC---------------------------CCC---------------CCC
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN---------------------------DGA---------------SVG 285 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~---------------------------~~~---------------~~~ 285 (436)
.+.+.|-||||||.+++.+-++|......... ... ...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 46788999999999999999877611000000 000 001
Q ss_pred CCcceeecceeecccCcccC--------------CCCeEEEEEecCCcCCCCccccC--C-Ccee-EEEEcCCCCHHHHH
Q 013823 286 SNTKLTLSGILNFIDGLWSS--------------CGDERIIVFTTNHKERIDPALLR--P-GRMD-VHINMSYCTVHGFK 347 (436)
Q Consensus 286 ~~~~~~~s~LL~~ldg~~~~--------------~~~~~ivI~TTN~~~~lD~AllR--p-GR~d-~~I~~~~p~~~~r~ 347 (436)
...+.+.--|++++|-++.. .+...+||+..|.-+ |+.-++- + .|++ ..|.|...+.++..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq 582 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQ 582 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHH
Confidence 12222333456666655331 223456666677644 3333321 1 2554 56788888999999
Q ss_pred HHHHHHhcc
Q 013823 348 VLASNYLGI 356 (436)
Q Consensus 348 ~i~~~~l~~ 356 (436)
+|+..-|..
T Consensus 583 ~Ii~~RL~~ 591 (767)
T KOG1514|consen 583 EIISARLKG 591 (767)
T ss_pred HHHHHhhcc
Confidence 888877754
No 491
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.92 E-value=0.019 Score=53.14 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=24.2
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+...--+.+.||+|||||||.+.+|+...
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 34445588899999999999999998776
No 492
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.91 E-value=0.016 Score=54.06 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.3
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
...-+.|.||+|+|||||+++|++.+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33458899999999999999999865
No 493
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.90 E-value=0.019 Score=53.03 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=23.1
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+..-+.|.||+|+|||+|+++||+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345588999999999999999998764
No 494
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.90 E-value=0.028 Score=57.68 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=40.0
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
...+++++|....-+++++.+.. |. +....+|++|++||||+.+|++|..
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~a----p~~~~vLi~GetGtGKel~A~~iH~ 123 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------YA----PSGLPVLIIGETGTGKELFARLIHA 123 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------hC----CCCCcEEEecCCCccHHHHHHHHHH
Confidence 35689999998888888777764 21 3346799999999999999999983
No 495
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.018 Score=54.78 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=22.7
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...-+.|.||+|+|||||+++||+.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 334588999999999999999998653
No 496
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.90 E-value=0.017 Score=50.70 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.....+.|.||+|+|||+|+++|++.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344568899999999999999998865
No 497
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.89 E-value=0.021 Score=55.44 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=24.3
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|+....-++|.||||+|||+++..+|..+
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45566678999999999999999988765
No 498
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.016 Score=54.00 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=21.1
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.|.||+|+|||||+++|++.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998653
No 499
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.88 E-value=0.018 Score=53.91 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.7
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...-+.|.||+|+|||||+++|++.+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334588999999999999999998653
No 500
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.87 E-value=0.022 Score=53.78 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.+.-+.|.||+|+|||||+++|++.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33458899999999999999999876
Done!