Query 013823
Match_columns 436
No_of_seqs 420 out of 2625
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 17:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.7E-35 5.9E-40 299.3 13.1 177 206-386 142-363 (405)
2 4b4t_I 26S protease regulatory 100.0 3.5E-35 1.2E-39 298.0 14.5 180 203-386 173-397 (437)
3 4b4t_L 26S protease subunit RP 100.0 1.3E-34 4.5E-39 296.8 14.9 178 205-386 174-396 (437)
4 4b4t_M 26S protease regulatory 100.0 2E-34 6.8E-39 295.3 14.2 179 204-386 173-396 (434)
5 4b4t_K 26S protease regulatory 100.0 3.7E-34 1.3E-38 293.1 15.7 178 205-386 165-388 (428)
6 4b4t_H 26S protease regulatory 100.0 3.3E-34 1.1E-38 293.5 12.9 177 206-386 203-424 (467)
7 3cf2_A TER ATPase, transitiona 100.0 1E-29 3.6E-34 277.3 3.5 177 206-386 471-692 (806)
8 3cf2_A TER ATPase, transitiona 99.9 1.1E-27 3.9E-32 261.3 12.9 176 207-386 199-416 (806)
9 2x8a_A Nuclear valosin-contain 99.9 1.5E-25 5.1E-30 217.6 14.8 178 207-386 5-227 (274)
10 3cf0_A Transitional endoplasmi 99.9 3.2E-24 1.1E-28 210.6 18.4 177 206-386 9-230 (301)
11 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.3E-22 4.6E-27 193.5 14.8 176 208-386 2-223 (262)
12 2ce7_A Cell division protein F 99.9 2.6E-23 8.8E-28 215.9 10.4 175 207-386 11-230 (476)
13 3h4m_A Proteasome-activating n 99.9 1E-22 3.5E-27 197.2 13.6 178 205-386 10-232 (285)
14 1xwi_A SKD1 protein; VPS4B, AA 99.9 7.8E-23 2.7E-27 202.8 13.0 176 206-386 6-224 (322)
15 3eie_A Vacuolar protein sortin 99.9 3.4E-22 1.2E-26 197.9 13.2 179 203-386 9-229 (322)
16 1lv7_A FTSH; alpha/beta domain 99.9 4.5E-22 1.5E-26 190.3 13.2 176 206-386 6-226 (257)
17 2r62_A Cell division protease 99.9 1.1E-21 3.7E-26 188.4 13.2 177 206-386 5-227 (268)
18 2qp9_X Vacuolar protein sortin 99.9 1.7E-21 5.8E-26 195.7 12.6 176 206-386 45-262 (355)
19 1ixz_A ATP-dependent metallopr 99.8 5.3E-21 1.8E-25 182.5 13.9 176 206-386 10-230 (254)
20 2zan_A Vacuolar protein sortin 99.8 2.4E-21 8.2E-26 200.3 11.8 177 205-386 127-346 (444)
21 2dhr_A FTSH; AAA+ protein, hex 99.8 4.8E-21 1.6E-25 199.9 12.8 175 207-386 26-245 (499)
22 3hu3_A Transitional endoplasmi 99.8 6E-21 2E-25 199.3 13.3 176 207-386 199-416 (489)
23 3vfd_A Spastin; ATPase, microt 99.8 4.1E-20 1.4E-24 187.6 11.4 180 203-386 106-327 (389)
24 1iy2_A ATP-dependent metallopr 99.8 1E-19 3.5E-24 176.1 13.6 177 205-386 33-254 (278)
25 1ypw_A Transitional endoplasmi 99.8 2E-22 6.9E-27 222.3 -6.4 177 206-386 471-692 (806)
26 3d8b_A Fidgetin-like protein 1 99.8 4E-20 1.4E-24 185.7 10.3 177 206-386 78-296 (357)
27 3b9p_A CG5977-PA, isoform A; A 99.8 7.3E-20 2.5E-24 178.3 11.0 177 206-386 15-234 (297)
28 1ypw_A Transitional endoplasmi 99.7 3.1E-18 1.1E-22 188.9 10.7 176 207-386 199-416 (806)
29 3t15_A Ribulose bisphosphate c 99.7 3E-18 1E-22 167.6 8.7 128 240-372 30-213 (293)
30 1g41_A Heat shock protein HSLU 99.7 1.1E-17 3.6E-22 171.8 5.5 134 213-350 16-188 (444)
31 2c9o_A RUVB-like 1; hexameric 99.6 8.4E-16 2.9E-20 159.2 5.6 130 206-343 31-226 (456)
32 3pfi_A Holliday junction ATP-d 99.5 2.5E-14 8.5E-19 141.6 11.9 174 199-385 18-227 (338)
33 3syl_A Protein CBBX; photosynt 99.5 1.8E-14 6.1E-19 140.6 8.7 140 211-357 29-220 (309)
34 1hqc_A RUVB; extended AAA-ATPa 99.5 2.5E-13 8.6E-18 133.2 13.6 169 206-385 6-211 (324)
35 3u61_B DNA polymerase accessor 99.4 4.2E-13 1.4E-17 132.0 8.3 139 199-354 15-178 (324)
36 2chg_A Replication factor C sm 99.4 1.7E-12 5.8E-17 118.7 10.7 137 205-357 10-177 (226)
37 3m6a_A ATP-dependent protease 99.3 1.8E-12 6.1E-17 137.0 9.7 133 211-354 80-266 (543)
38 3uk6_A RUVB-like 2; hexameric 99.3 2.1E-12 7.3E-17 128.9 9.7 55 209-271 41-95 (368)
39 1ofh_A ATP-dependent HSL prote 99.3 9.4E-12 3.2E-16 120.7 13.1 139 213-353 16-214 (310)
40 1njg_A DNA polymerase III subu 99.3 5.9E-12 2E-16 116.3 10.9 138 205-357 16-201 (250)
41 2chq_A Replication factor C sm 99.3 1E-11 3.5E-16 120.8 12.2 133 205-357 10-177 (319)
42 3pvs_A Replication-associated 99.3 7.4E-12 2.5E-16 129.2 11.4 130 205-356 19-180 (447)
43 3pxg_A Negative regulator of g 99.3 4E-11 1.4E-15 124.4 15.8 135 206-356 174-340 (468)
44 1d2n_A N-ethylmaleimide-sensit 99.3 1.9E-11 6.5E-16 117.3 12.0 134 212-351 33-209 (272)
45 2r44_A Uncharacterized protein 99.3 4E-12 1.4E-16 125.4 7.3 131 209-356 24-200 (331)
46 1jr3_A DNA polymerase III subu 99.2 3E-11 1E-15 120.4 12.0 138 205-357 9-194 (373)
47 1sxj_A Activator 1 95 kDa subu 99.2 7.3E-11 2.5E-15 123.9 14.6 154 198-357 27-225 (516)
48 1sxj_D Activator 1 41 kDa subu 99.2 2.5E-11 8.6E-16 120.0 9.6 141 199-357 26-208 (353)
49 1iqp_A RFCS; clamp loader, ext 99.2 2.6E-11 8.8E-16 118.4 9.5 137 199-357 14-185 (327)
50 1jbk_A CLPB protein; beta barr 99.2 5.9E-12 2E-16 112.3 4.4 128 207-350 17-194 (195)
51 1g8p_A Magnesium-chelatase 38 99.2 3.7E-11 1.3E-15 118.8 10.3 45 309-355 187-233 (350)
52 3hws_A ATP-dependent CLP prote 99.2 1.4E-11 4.7E-16 123.4 6.8 58 214-271 17-76 (363)
53 3bos_A Putative DNA replicatio 99.2 1.6E-10 5.5E-15 107.4 13.5 139 205-357 21-190 (242)
54 3pxi_A Negative regulator of g 99.2 1.8E-10 6.1E-15 126.4 16.0 135 206-356 174-340 (758)
55 1sxj_B Activator 1 37 kDa subu 99.2 7.9E-11 2.7E-15 114.7 10.7 140 199-356 10-181 (323)
56 1in4_A RUVB, holliday junction 99.1 1.9E-10 6.5E-15 114.0 12.4 170 205-385 18-223 (334)
57 4fcw_A Chaperone protein CLPB; 99.1 4.5E-11 1.5E-15 116.3 7.6 139 212-356 17-231 (311)
58 2p65_A Hypothetical protein PF 99.1 5E-11 1.7E-15 106.2 5.7 52 206-270 16-67 (187)
59 3pxi_A Negative regulator of g 99.1 9.5E-11 3.2E-15 128.5 8.1 135 212-356 491-677 (758)
60 1l8q_A Chromosomal replication 99.1 1.8E-10 6.2E-15 113.2 8.6 161 205-381 4-204 (324)
61 1sxj_C Activator 1 40 kDa subu 99.1 4.7E-10 1.6E-14 111.2 10.5 139 199-355 14-183 (340)
62 1um8_A ATP-dependent CLP prote 99.0 4.7E-10 1.6E-14 112.7 10.4 59 213-272 22-98 (376)
63 1sxj_E Activator 1 40 kDa subu 99.0 3E-10 1E-14 112.6 7.6 138 205-357 7-209 (354)
64 1r6b_X CLPA protein; AAA+, N-t 99.0 2.8E-10 9.7E-15 124.7 7.8 135 212-356 458-668 (758)
65 2v1u_A Cell division control p 98.9 1.2E-09 4E-14 108.8 8.6 137 209-356 16-216 (387)
66 2z4s_A Chromosomal replication 98.9 1.1E-09 3.9E-14 112.6 8.2 139 205-357 98-279 (440)
67 1r6b_X CLPA protein; AAA+, N-t 98.9 1.9E-09 6.4E-14 118.2 10.1 134 206-355 180-363 (758)
68 3f9v_A Minichromosome maintena 98.9 2.8E-10 9.7E-15 121.4 2.9 107 248-357 329-493 (595)
69 1qvr_A CLPB protein; coiled co 98.9 4.2E-09 1.4E-13 117.0 12.1 133 207-355 165-346 (854)
70 3te6_A Regulatory protein SIR3 98.9 7.7E-09 2.6E-13 101.8 11.9 164 244-409 43-290 (318)
71 2qby_B CDC6 homolog 3, cell di 98.9 2E-09 6.8E-14 107.5 7.7 132 212-355 20-211 (384)
72 1a5t_A Delta prime, HOLB; zinc 98.9 7.5E-09 2.5E-13 102.5 11.3 44 308-354 137-180 (334)
73 1fnn_A CDC6P, cell division co 98.9 5.5E-09 1.9E-13 104.3 9.5 138 210-356 15-208 (389)
74 3nbx_X ATPase RAVA; AAA+ ATPas 98.9 3.8E-09 1.3E-13 110.2 8.5 44 310-355 150-197 (500)
75 2bjv_A PSP operon transcriptio 98.8 3E-09 1E-13 101.4 5.0 52 209-271 3-54 (265)
76 2qby_A CDC6 homolog 1, cell di 98.8 4.7E-09 1.6E-13 104.3 5.1 134 208-355 16-211 (386)
77 1qvr_A CLPB protein; coiled co 98.7 8.4E-09 2.9E-13 114.5 7.3 135 212-356 558-772 (854)
78 1svm_A Large T antigen; AAA+ f 98.7 1.2E-08 4E-13 102.8 5.4 92 241-340 164-284 (377)
79 2gno_A DNA polymerase III, gam 98.7 1.6E-08 5.5E-13 99.0 6.0 100 246-354 18-152 (305)
80 1ojl_A Transcriptional regulat 98.6 6.4E-08 2.2E-12 94.6 7.8 48 213-271 3-50 (304)
81 4akg_A Glutathione S-transfera 98.6 8.8E-08 3E-12 116.1 9.1 45 309-356 1384-1433(2695)
82 3n70_A Transport activator; si 98.5 1.9E-08 6.4E-13 87.3 1.5 47 213-270 2-48 (145)
83 3ec2_A DNA replication protein 98.4 2.1E-07 7.3E-12 83.2 6.2 59 207-271 5-63 (180)
84 1u0j_A DNA replication protein 98.4 3.8E-07 1.3E-11 87.3 6.5 28 244-271 102-129 (267)
85 3k1j_A LON protease, ATP-depen 98.3 1.8E-07 6E-12 100.0 3.3 53 204-271 33-85 (604)
86 2w58_A DNAI, primosome compone 98.2 2E-06 6.8E-11 78.1 6.6 58 208-271 21-79 (202)
87 1tue_A Replication protein E1; 98.1 1.7E-06 5.8E-11 79.5 5.1 30 242-271 54-83 (212)
88 3co5_A Putative two-component 98.1 6.6E-07 2.3E-11 77.3 1.7 48 213-271 5-52 (143)
89 1w5s_A Origin recognition comp 98.1 4.9E-06 1.7E-10 83.4 7.6 53 210-270 20-76 (412)
90 2qgz_A Helicase loader, putati 98.1 5.2E-06 1.8E-10 81.2 7.2 58 208-271 120-177 (308)
91 3cmw_A Protein RECA, recombina 97.8 7.6E-06 2.6E-10 95.6 4.4 63 209-271 1017-1107(1706)
92 4akg_A Glutathione S-transfera 97.5 0.00011 3.7E-09 89.5 7.9 104 246-352 645-791 (2695)
93 3vkg_A Dynein heavy chain, cyt 97.5 0.0003 1E-08 86.5 10.9 44 309-355 1422-1470(3245)
94 3trf_A Shikimate kinase, SK; a 97.3 0.00012 4E-09 65.2 3.3 30 246-275 5-34 (185)
95 2rhm_A Putative kinase; P-loop 97.3 0.00013 4.6E-09 64.9 3.4 31 243-273 2-32 (193)
96 1qhx_A CPT, protein (chloramph 97.2 0.00017 5.7E-09 63.6 3.7 26 247-272 4-29 (178)
97 3f8t_A Predicted ATPase involv 97.2 9.9E-05 3.4E-09 75.8 2.5 35 309-345 339-385 (506)
98 3vaa_A Shikimate kinase, SK; s 97.2 0.00017 5.8E-09 65.3 3.8 31 245-275 24-54 (199)
99 2kjq_A DNAA-related protein; s 97.2 0.00016 5.5E-09 62.8 3.3 26 245-270 35-60 (149)
100 1kag_A SKI, shikimate kinase I 97.1 0.00024 8.1E-09 62.3 3.6 28 247-274 5-32 (173)
101 2r2a_A Uncharacterized protein 97.1 0.00062 2.1E-08 62.1 6.3 35 310-346 124-158 (199)
102 1via_A Shikimate kinase; struc 97.1 0.00022 7.5E-09 62.9 3.0 28 248-275 6-33 (175)
103 3kb2_A SPBC2 prophage-derived 97.1 0.00024 8.3E-09 61.9 3.2 28 248-275 3-30 (173)
104 1gvn_B Zeta; postsegregational 97.1 0.00056 1.9E-08 65.9 6.0 26 245-270 32-57 (287)
105 3iij_A Coilin-interacting nucl 97.0 0.00034 1.2E-08 61.9 3.8 29 246-274 11-39 (180)
106 1ly1_A Polynucleotide kinase; 97.0 0.00029 9.8E-09 61.9 3.2 26 246-271 2-28 (181)
107 2iyv_A Shikimate kinase, SK; t 97.0 0.00031 1.1E-08 62.3 3.2 27 248-274 4-30 (184)
108 1zp6_A Hypothetical protein AT 97.0 0.00029 9.9E-09 62.8 2.6 29 243-271 6-34 (191)
109 1y63_A LMAJ004144AAA protein; 97.0 0.00042 1.5E-08 61.8 3.7 28 246-273 10-38 (184)
110 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00028 9.5E-09 69.2 2.3 30 242-271 119-148 (331)
111 1kht_A Adenylate kinase; phosp 96.9 0.00043 1.5E-08 61.4 3.3 25 247-271 4-28 (192)
112 3umf_A Adenylate kinase; rossm 96.9 0.0005 1.7E-08 63.6 3.9 29 244-272 27-55 (217)
113 1zuh_A Shikimate kinase; alpha 96.9 0.00039 1.3E-08 60.8 3.0 29 247-275 8-36 (168)
114 2p5t_B PEZT; postsegregational 96.9 0.00056 1.9E-08 64.4 4.2 27 245-271 31-57 (253)
115 3cm0_A Adenylate kinase; ATP-b 96.9 0.00046 1.6E-08 61.2 3.3 27 247-273 5-31 (186)
116 1tev_A UMP-CMP kinase; ploop, 96.9 0.00049 1.7E-08 61.1 3.4 27 246-272 3-29 (196)
117 2cdn_A Adenylate kinase; phosp 96.9 0.00058 2E-08 61.6 3.8 28 247-274 21-48 (201)
118 1nks_A Adenylate kinase; therm 96.9 0.00038 1.3E-08 61.7 2.5 24 248-271 3-26 (194)
119 4eun_A Thermoresistant glucoki 96.9 0.00059 2E-08 61.7 3.8 29 246-274 29-57 (200)
120 2ze6_A Isopentenyl transferase 96.9 0.00049 1.7E-08 65.0 3.3 28 248-275 3-30 (253)
121 3lw7_A Adenylate kinase relate 96.9 0.00052 1.8E-08 59.5 3.2 25 248-273 3-27 (179)
122 3t61_A Gluconokinase; PSI-biol 96.8 0.00061 2.1E-08 61.5 3.7 30 246-275 18-47 (202)
123 2vli_A Antibiotic resistance p 96.8 0.0005 1.7E-08 60.7 3.0 29 247-275 6-34 (183)
124 2bbw_A Adenylate kinase 4, AK4 96.8 0.00061 2.1E-08 63.7 3.7 27 246-272 27-53 (246)
125 3vkg_A Dynein heavy chain, cyt 96.8 0.00095 3.3E-08 82.2 6.2 107 246-355 604-754 (3245)
126 1e6c_A Shikimate kinase; phosp 96.8 0.00058 2E-08 59.7 3.2 28 247-274 3-30 (173)
127 1qf9_A UMP/CMP kinase, protein 96.8 0.00061 2.1E-08 60.4 3.3 29 245-273 5-33 (194)
128 1knq_A Gluconate kinase; ALFA/ 96.8 0.00071 2.4E-08 59.5 3.6 28 247-274 9-36 (175)
129 3dl0_A Adenylate kinase; phosp 96.8 0.00062 2.1E-08 62.0 3.2 24 249-272 3-26 (216)
130 2c95_A Adenylate kinase 1; tra 96.8 0.00066 2.3E-08 60.5 3.3 28 246-273 9-36 (196)
131 1zd8_A GTP:AMP phosphotransfer 96.8 0.0006 2E-08 62.9 3.1 27 246-272 7-33 (227)
132 1zak_A Adenylate kinase; ATP:A 96.8 0.00063 2.1E-08 62.4 3.2 27 246-272 5-31 (222)
133 3be4_A Adenylate kinase; malar 96.8 0.00058 2E-08 62.6 2.9 27 247-273 6-32 (217)
134 3fb4_A Adenylate kinase; psych 96.8 0.00066 2.3E-08 61.8 3.2 25 249-273 3-27 (216)
135 2qen_A Walker-type ATPase; unk 96.8 0.0021 7.3E-08 62.2 7.1 48 209-271 9-56 (350)
136 1aky_A Adenylate kinase; ATP:A 96.8 0.00078 2.7E-08 61.7 3.7 27 247-273 5-31 (220)
137 2plr_A DTMP kinase, probable t 96.7 0.00071 2.4E-08 61.0 3.3 26 247-272 5-30 (213)
138 2bwj_A Adenylate kinase 5; pho 96.7 0.00068 2.3E-08 60.6 3.1 28 246-273 12-39 (199)
139 1ye8_A Protein THEP1, hypothet 96.7 0.00075 2.6E-08 60.3 3.2 25 249-273 3-27 (178)
140 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00065 2.2E-08 67.4 3.0 28 247-274 25-52 (359)
141 3uie_A Adenylyl-sulfate kinase 96.7 0.00082 2.8E-08 60.7 3.3 27 245-271 24-50 (200)
142 2qor_A Guanylate kinase; phosp 96.7 0.001 3.4E-08 60.3 3.9 29 243-271 9-37 (204)
143 3upu_A ATP-dependent DNA helic 96.7 0.0016 5.4E-08 66.8 5.7 55 204-271 16-70 (459)
144 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00078 2.7E-08 61.4 3.1 29 242-270 19-47 (235)
145 2jaq_A Deoxyguanosine kinase; 96.7 0.00088 3E-08 60.0 3.3 26 249-274 3-28 (205)
146 2pt5_A Shikimate kinase, SK; a 96.7 0.00089 3E-08 58.2 3.3 26 249-274 3-28 (168)
147 1ak2_A Adenylate kinase isoenz 96.7 0.001 3.6E-08 61.6 3.8 27 247-273 17-43 (233)
148 3sr0_A Adenylate kinase; phosp 96.6 0.00089 3E-08 61.4 3.2 24 249-272 3-26 (206)
149 1ukz_A Uridylate kinase; trans 96.6 0.0011 3.7E-08 59.7 3.6 26 247-272 16-41 (203)
150 1kgd_A CASK, peripheral plasma 96.6 0.0012 4.2E-08 58.6 3.7 26 246-271 5-30 (180)
151 3tlx_A Adenylate kinase 2; str 96.6 0.0012 4.1E-08 61.8 3.7 29 245-273 28-56 (243)
152 2cvh_A DNA repair and recombin 96.6 0.0012 4E-08 59.9 3.5 27 242-268 16-42 (220)
153 2j41_A Guanylate kinase; GMP, 96.5 0.0013 4.4E-08 59.1 3.4 26 245-270 5-30 (207)
154 4b3f_X DNA-binding protein smu 96.5 0.0031 1E-07 67.6 6.8 46 209-269 183-228 (646)
155 2wwf_A Thymidilate kinase, put 96.5 0.0012 4.1E-08 59.6 3.1 27 246-272 10-36 (212)
156 2xb4_A Adenylate kinase; ATP-b 96.5 0.0013 4.3E-08 60.7 3.3 25 249-273 3-27 (223)
157 2fna_A Conserved hypothetical 96.5 0.0017 5.7E-08 63.1 4.2 45 210-271 11-55 (357)
158 1cke_A CK, MSSA, protein (cyti 96.5 0.0013 4.6E-08 60.1 3.3 25 247-271 6-30 (227)
159 1e4v_A Adenylate kinase; trans 96.5 0.0011 3.9E-08 60.4 2.7 25 249-273 3-27 (214)
160 1n0w_A DNA repair protein RAD5 96.5 0.0013 4.3E-08 60.7 3.0 28 242-269 20-47 (243)
161 4a74_A DNA repair and recombin 96.4 0.0011 3.8E-08 60.5 2.5 30 242-271 21-50 (231)
162 1ny5_A Transcriptional regulat 96.4 0.0037 1.3E-07 62.8 6.5 49 212-271 137-185 (387)
163 2bdt_A BH3686; alpha-beta prot 96.4 0.0015 5.1E-08 58.2 3.2 24 248-271 4-27 (189)
164 2yvu_A Probable adenylyl-sulfa 96.4 0.0017 5.8E-08 57.7 3.5 26 246-271 13-38 (186)
165 1nn5_A Similar to deoxythymidy 96.4 0.0014 4.7E-08 59.3 2.9 26 246-271 9-34 (215)
166 3c8u_A Fructokinase; YP_612366 96.4 0.003 1E-07 57.4 5.2 26 246-271 22-47 (208)
167 1jr3_D DNA polymerase III, del 96.4 0.0029 1E-07 62.0 5.5 106 245-357 17-158 (343)
168 3tau_A Guanylate kinase, GMP k 96.4 0.0018 6.2E-08 58.9 3.5 26 246-271 8-33 (208)
169 2ehv_A Hypothetical protein PH 96.4 0.0014 4.8E-08 60.6 2.8 27 242-268 26-52 (251)
170 2pbr_A DTMP kinase, thymidylat 96.4 0.0017 6E-08 57.5 3.3 27 249-275 3-32 (195)
171 2z0h_A DTMP kinase, thymidylat 96.4 0.0018 6E-08 57.7 3.2 27 249-275 3-32 (197)
172 2pez_A Bifunctional 3'-phospho 96.3 0.0021 7.3E-08 56.7 3.5 25 246-270 5-29 (179)
173 3tr0_A Guanylate kinase, GMP k 96.3 0.0023 7.8E-08 57.4 3.8 25 247-271 8-32 (205)
174 3crm_A TRNA delta(2)-isopenten 96.3 0.002 7E-08 63.1 3.7 29 246-274 5-33 (323)
175 2dr3_A UPF0273 protein PH0284; 96.3 0.0016 5.6E-08 60.0 2.6 29 242-270 19-47 (247)
176 1m7g_A Adenylylsulfate kinase; 96.2 0.0024 8.1E-08 58.1 3.4 27 245-271 24-50 (211)
177 3nwj_A ATSK2; P loop, shikimat 96.2 0.0022 7.5E-08 60.6 3.3 30 246-275 48-77 (250)
178 3r20_A Cytidylate kinase; stru 96.2 0.0025 8.5E-08 59.6 3.6 26 247-272 10-35 (233)
179 3ake_A Cytidylate kinase; CMP 96.2 0.0021 7.1E-08 57.8 3.0 26 248-273 4-29 (208)
180 2if2_A Dephospho-COA kinase; a 96.2 0.0019 6.4E-08 58.2 2.7 24 248-272 3-26 (204)
181 3hr8_A Protein RECA; alpha and 96.2 0.0017 5.7E-08 64.6 2.4 29 242-270 57-85 (356)
182 1jjv_A Dephospho-COA kinase; P 96.2 0.0021 7.3E-08 57.9 2.9 25 248-273 4-28 (206)
183 3b9q_A Chloroplast SRP recepto 96.2 0.0032 1.1E-07 61.1 4.2 54 218-271 70-125 (302)
184 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0024 8.3E-08 60.3 3.3 23 247-269 5-27 (260)
185 3a00_A Guanylate kinase, GMP k 96.2 0.0026 8.9E-08 56.7 3.3 25 247-271 2-26 (186)
186 2v54_A DTMP kinase, thymidylat 96.1 0.0026 9E-08 57.0 3.3 29 247-275 5-34 (204)
187 1lvg_A Guanylate kinase, GMP k 96.1 0.0027 9.2E-08 57.4 3.3 26 246-271 4-29 (198)
188 1nlf_A Regulatory protein REPA 96.1 0.002 7E-08 61.3 2.5 29 242-270 26-54 (279)
189 2v9p_A Replication protein E1; 96.1 0.0035 1.2E-07 60.9 3.9 30 242-271 122-151 (305)
190 1htw_A HI0065; nucleotide-bind 96.1 0.0042 1.4E-07 54.4 4.1 27 244-270 31-57 (158)
191 1odf_A YGR205W, hypothetical 3 96.0 0.0047 1.6E-07 59.6 4.6 26 246-271 31-56 (290)
192 1znw_A Guanylate kinase, GMP k 96.0 0.0037 1.3E-07 56.7 3.5 27 245-271 19-45 (207)
193 2zr9_A Protein RECA, recombina 96.0 0.0025 8.5E-08 63.2 2.5 29 242-270 57-85 (349)
194 1cr0_A DNA primase/helicase; R 96.0 0.0031 1.1E-07 60.5 3.1 31 241-271 30-60 (296)
195 4e22_A Cytidylate kinase; P-lo 96.0 0.0042 1.4E-07 58.4 3.9 26 247-272 28-53 (252)
196 2qmh_A HPR kinase/phosphorylas 96.0 0.0034 1.1E-07 57.3 3.0 26 246-271 34-59 (205)
197 1uj2_A Uridine-cytidine kinase 96.0 0.0035 1.2E-07 58.8 3.3 28 246-273 22-49 (252)
198 2zts_A Putative uncharacterize 96.0 0.0034 1.2E-07 57.9 3.1 28 242-269 26-53 (251)
199 1z6g_A Guanylate kinase; struc 95.9 0.0039 1.3E-07 57.3 3.4 26 245-270 22-47 (218)
200 3cmu_A Protein RECA, recombina 95.9 0.0029 1E-07 75.1 3.1 30 242-271 1423-1452(2050)
201 1ltq_A Polynucleotide kinase; 95.9 0.0037 1.3E-07 59.8 3.4 25 247-271 3-28 (301)
202 3asz_A Uridine kinase; cytidin 95.9 0.0034 1.2E-07 56.7 2.9 25 247-271 7-31 (211)
203 1u94_A RECA protein, recombina 95.9 0.0033 1.1E-07 62.4 3.1 29 242-270 59-87 (356)
204 2og2_A Putative signal recogni 95.9 0.0044 1.5E-07 61.6 3.9 53 219-271 128-182 (359)
205 2grj_A Dephospho-COA kinase; T 95.9 0.0036 1.2E-07 56.6 2.9 26 248-273 14-39 (192)
206 1ex7_A Guanylate kinase; subst 95.9 0.0042 1.4E-07 56.0 3.3 25 247-271 2-26 (186)
207 2yhs_A FTSY, cell division pro 95.9 0.0046 1.6E-07 64.0 3.9 26 246-271 293-318 (503)
208 1rz3_A Hypothetical protein rb 95.9 0.0085 2.9E-07 54.0 5.2 25 246-270 22-46 (201)
209 3dzd_A Transcriptional regulat 95.8 0.0088 3E-07 59.6 5.7 48 213-271 130-177 (368)
210 1uf9_A TT1252 protein; P-loop, 95.8 0.0038 1.3E-07 55.8 2.7 25 247-272 9-33 (203)
211 3ney_A 55 kDa erythrocyte memb 95.8 0.0058 2E-07 55.5 3.9 26 246-271 19-44 (197)
212 2qt1_A Nicotinamide riboside k 95.8 0.0036 1.2E-07 56.6 2.5 25 247-271 22-47 (207)
213 3jvv_A Twitching mobility prot 95.8 0.0074 2.5E-07 59.9 4.9 24 248-271 125-148 (356)
214 1pzn_A RAD51, DNA repair and r 95.8 0.0035 1.2E-07 62.1 2.5 29 242-270 127-155 (349)
215 1p9r_A General secretion pathw 95.8 0.01 3.5E-07 60.2 6.0 49 208-271 143-192 (418)
216 1vma_A Cell division protein F 95.8 0.0051 1.8E-07 59.8 3.5 51 220-271 79-129 (306)
217 2z43_A DNA repair and recombin 95.8 0.0037 1.3E-07 61.0 2.6 29 242-270 103-131 (324)
218 1v5w_A DMC1, meiotic recombina 95.8 0.0053 1.8E-07 60.5 3.7 29 242-270 118-146 (343)
219 3sfz_A APAF-1, apoptotic pepti 95.7 0.048 1.7E-06 61.8 12.1 53 206-269 118-170 (1249)
220 2h92_A Cytidylate kinase; ross 95.7 0.0051 1.7E-07 55.9 3.2 27 247-273 4-30 (219)
221 4gp7_A Metallophosphoesterase; 95.7 0.0049 1.7E-07 54.2 2.9 22 246-267 9-30 (171)
222 1s96_A Guanylate kinase, GMP k 95.7 0.0062 2.1E-07 56.2 3.6 29 243-271 13-41 (219)
223 3zvl_A Bifunctional polynucleo 95.7 0.0049 1.7E-07 62.5 3.2 31 246-276 258-288 (416)
224 2jeo_A Uridine-cytidine kinase 95.7 0.006 2.1E-07 56.8 3.6 25 248-272 27-51 (245)
225 4eaq_A DTMP kinase, thymidylat 95.7 0.0067 2.3E-07 56.2 3.8 25 247-271 27-51 (229)
226 1q3t_A Cytidylate kinase; nucl 95.7 0.0065 2.2E-07 56.2 3.8 26 247-272 17-42 (236)
227 2eyu_A Twitching motility prot 95.7 0.007 2.4E-07 57.4 4.0 28 244-271 23-50 (261)
228 3kw6_A 26S protease regulatory 95.6 0.0076 2.6E-07 46.0 3.3 46 339-386 1-47 (78)
229 2i3b_A HCR-ntpase, human cance 95.6 0.0062 2.1E-07 54.9 3.2 24 248-271 3-26 (189)
230 1vht_A Dephospho-COA kinase; s 95.6 0.0061 2.1E-07 55.4 3.2 26 247-273 5-30 (218)
231 1gtv_A TMK, thymidylate kinase 95.6 0.0022 7.4E-08 58.0 0.0 23 249-271 3-25 (214)
232 3e1s_A Exodeoxyribonuclease V, 95.6 0.0092 3.2E-07 63.0 4.9 25 247-271 205-229 (574)
233 3e70_C DPA, signal recognition 95.5 0.014 4.7E-07 57.3 5.7 27 245-271 128-154 (328)
234 3a8t_A Adenylate isopentenyltr 95.5 0.0059 2E-07 60.1 3.0 30 247-276 41-70 (339)
235 2i1q_A DNA repair and recombin 95.5 0.0051 1.7E-07 59.8 2.3 29 242-270 94-122 (322)
236 1xp8_A RECA protein, recombina 95.5 0.0054 1.8E-07 61.2 2.5 29 242-270 70-98 (366)
237 3kl4_A SRP54, signal recogniti 95.4 0.0073 2.5E-07 61.5 3.5 26 246-271 97-122 (433)
238 2ewv_A Twitching motility prot 95.4 0.01 3.4E-07 59.3 4.2 28 244-271 134-161 (372)
239 3foz_A TRNA delta(2)-isopenten 95.4 0.0089 3E-07 58.1 3.7 30 245-274 9-38 (316)
240 3lnc_A Guanylate kinase, GMP k 95.3 0.0049 1.7E-07 56.8 1.6 26 246-271 27-53 (231)
241 2gk6_A Regulator of nonsense t 95.3 0.014 4.8E-07 62.2 5.2 24 247-270 196-219 (624)
242 3io5_A Recombination and repai 95.3 0.0075 2.6E-07 58.9 2.8 28 242-270 25-52 (333)
243 3bh0_A DNAB-like replicative h 95.2 0.011 3.6E-07 57.6 3.7 29 242-270 64-92 (315)
244 1np6_A Molybdopterin-guanine d 95.2 0.012 4.1E-07 52.3 3.7 27 245-271 5-31 (174)
245 3tqc_A Pantothenate kinase; bi 95.2 0.022 7.6E-07 55.7 5.8 24 248-271 94-117 (321)
246 3fdi_A Uncharacterized protein 95.2 0.0084 2.9E-07 54.4 2.6 30 247-276 7-36 (201)
247 3lda_A DNA repair protein RAD5 95.2 0.007 2.4E-07 61.1 2.2 28 242-269 174-201 (400)
248 1zu4_A FTSY; GTPase, signal re 95.1 0.01 3.6E-07 57.9 3.4 27 245-271 104-130 (320)
249 3d3q_A TRNA delta(2)-isopenten 95.1 0.01 3.5E-07 58.4 3.3 28 247-274 8-35 (340)
250 1rj9_A FTSY, signal recognitio 95.1 0.012 4.2E-07 57.0 3.7 26 246-271 102-127 (304)
251 3aez_A Pantothenate kinase; tr 95.1 0.012 4.2E-07 57.2 3.7 25 247-271 91-115 (312)
252 3dm5_A SRP54, signal recogniti 95.1 0.01 3.6E-07 60.5 3.3 52 219-271 74-125 (443)
253 3kta_A Chromosome segregation 95.0 0.011 3.6E-07 52.1 2.8 24 248-271 28-51 (182)
254 3tqf_A HPR(Ser) kinase; transf 95.0 0.01 3.4E-07 52.9 2.5 24 246-269 16-39 (181)
255 2ged_A SR-beta, signal recogni 95.0 0.024 8.2E-07 49.8 5.0 26 245-270 47-72 (193)
256 2f6r_A COA synthase, bifunctio 95.0 0.011 3.9E-07 56.4 3.0 26 247-273 76-101 (281)
257 1z6t_A APAF-1, apoptotic prote 94.9 0.024 8.2E-07 59.5 5.7 50 209-269 121-170 (591)
258 3gmt_A Adenylate kinase; ssgci 94.9 0.012 4.1E-07 54.8 2.9 25 249-273 11-35 (230)
259 3b85_A Phosphate starvation-in 94.9 0.012 4.2E-07 53.7 2.9 23 247-269 23-45 (208)
260 3exa_A TRNA delta(2)-isopenten 94.9 0.014 4.7E-07 56.9 3.3 27 247-273 4-30 (322)
261 2axn_A 6-phosphofructo-2-kinas 94.8 0.013 4.5E-07 61.1 3.3 26 246-271 35-60 (520)
262 3tif_A Uncharacterized ABC tra 94.8 0.0095 3.3E-07 55.5 2.1 26 246-271 31-56 (235)
263 2cbz_A Multidrug resistance-as 94.8 0.0096 3.3E-07 55.5 2.0 27 245-271 30-56 (237)
264 2wjy_A Regulator of nonsense t 94.8 0.023 8E-07 62.3 5.2 24 247-270 372-395 (800)
265 2r6a_A DNAB helicase, replicat 94.8 0.017 5.7E-07 59.1 3.8 30 242-271 199-228 (454)
266 2onk_A Molybdate/tungstate ABC 94.7 0.012 4.1E-07 55.0 2.5 25 247-271 25-49 (240)
267 2pcj_A ABC transporter, lipopr 94.7 0.0087 3E-07 55.3 1.3 25 247-271 31-55 (224)
268 1b0u_A Histidine permease; ABC 94.6 0.012 4E-07 55.8 2.1 25 247-271 33-57 (262)
269 2orw_A Thymidine kinase; TMTK, 94.6 0.015 5E-07 52.0 2.6 24 247-270 4-27 (184)
270 2f9l_A RAB11B, member RAS onco 94.6 0.016 5.6E-07 51.6 2.9 22 248-269 7-28 (199)
271 1sq5_A Pantothenate kinase; P- 94.6 0.017 5.9E-07 55.9 3.3 25 247-271 81-105 (308)
272 2oap_1 GSPE-2, type II secreti 94.5 0.013 4.5E-07 61.0 2.4 26 246-271 260-285 (511)
273 1a7j_A Phosphoribulokinase; tr 94.5 0.011 3.9E-07 56.8 1.7 24 248-271 7-30 (290)
274 1lw7_A Transcriptional regulat 94.5 0.015 5.1E-07 57.6 2.6 27 246-272 170-196 (365)
275 1mv5_A LMRA, multidrug resista 94.5 0.013 4.4E-07 54.8 2.0 27 245-271 27-53 (243)
276 2pze_A Cystic fibrosis transme 94.5 0.012 4E-07 54.6 1.7 26 246-271 34-59 (229)
277 2q6t_A DNAB replication FORK h 94.5 0.02 6.7E-07 58.4 3.5 29 242-270 196-224 (444)
278 2dyk_A GTP-binding protein; GT 94.5 0.02 6.8E-07 48.4 3.0 22 248-269 3-24 (161)
279 1oix_A RAS-related protein RAB 94.5 0.016 5.5E-07 51.4 2.5 23 248-270 31-53 (191)
280 1sgw_A Putative ABC transporte 94.5 0.012 4E-07 54.1 1.6 25 247-271 36-60 (214)
281 2ocp_A DGK, deoxyguanosine kin 94.4 0.018 6E-07 53.4 2.8 25 247-271 3-27 (241)
282 1g6h_A High-affinity branched- 94.4 0.012 4.1E-07 55.6 1.7 25 247-271 34-58 (257)
283 2www_A Methylmalonic aciduria 94.4 0.073 2.5E-06 52.4 7.5 23 248-270 76-98 (349)
284 2v3c_C SRP54, signal recogniti 94.4 0.018 6.1E-07 58.7 3.1 26 246-271 99-124 (432)
285 1xjc_A MOBB protein homolog; s 94.4 0.021 7.3E-07 50.5 3.2 25 247-271 5-29 (169)
286 2olj_A Amino acid ABC transpor 94.4 0.014 4.8E-07 55.4 2.1 26 246-271 50-75 (263)
287 2px0_A Flagellar biosynthesis 94.4 0.02 6.8E-07 55.3 3.2 26 246-271 105-130 (296)
288 2ixe_A Antigen peptide transpo 94.4 0.014 4.8E-07 55.6 2.1 27 245-271 44-70 (271)
289 2ghi_A Transport protein; mult 94.4 0.014 4.8E-07 55.2 2.1 27 244-270 44-70 (260)
290 3sop_A Neuronal-specific septi 94.4 0.017 5.7E-07 55.0 2.6 24 248-271 4-27 (270)
291 2zu0_C Probable ATP-dependent 94.4 0.019 6.4E-07 54.6 2.9 25 246-270 46-70 (267)
292 4edh_A DTMP kinase, thymidylat 94.3 0.02 6.8E-07 52.5 2.9 24 248-271 8-31 (213)
293 1nrj_B SR-beta, signal recogni 94.3 0.02 7E-07 51.5 3.0 24 247-270 13-36 (218)
294 2ff7_A Alpha-hemolysin translo 94.3 0.013 4.6E-07 54.9 1.7 26 246-271 35-60 (247)
295 3gfo_A Cobalt import ATP-bindi 94.3 0.014 4.7E-07 55.8 1.7 25 247-271 35-59 (275)
296 1kao_A RAP2A; GTP-binding prot 94.3 0.023 7.9E-07 48.1 3.0 21 248-268 5-25 (167)
297 2qi9_C Vitamin B12 import ATP- 94.3 0.014 4.8E-07 54.9 1.7 25 247-271 27-51 (249)
298 2qm8_A GTPase/ATPase; G protei 94.3 0.042 1.4E-06 53.9 5.3 24 247-270 56-79 (337)
299 1ji0_A ABC transporter; ATP bi 94.2 0.014 4.8E-07 54.5 1.7 25 247-271 33-57 (240)
300 3v9p_A DTMP kinase, thymidylat 94.2 0.019 6.5E-07 53.3 2.6 25 248-272 27-51 (227)
301 3hdt_A Putative kinase; struct 94.2 0.019 6.4E-07 53.1 2.5 30 247-276 15-44 (223)
302 3fvq_A Fe(3+) IONS import ATP- 94.2 0.016 5.3E-07 57.6 2.1 25 247-271 31-55 (359)
303 2d2e_A SUFC protein; ABC-ATPas 94.2 0.018 6.2E-07 54.0 2.4 23 247-269 30-52 (250)
304 1z2a_A RAS-related protein RAB 94.2 0.024 8.2E-07 48.2 3.0 23 247-269 6-28 (168)
305 2wji_A Ferrous iron transport 94.2 0.02 6.7E-07 49.4 2.4 22 248-269 5-26 (165)
306 1vpl_A ABC transporter, ATP-bi 94.2 0.017 5.7E-07 54.6 2.1 26 246-271 41-66 (256)
307 3eph_A TRNA isopentenyltransfe 94.2 0.021 7.3E-07 57.5 3.0 28 247-274 3-30 (409)
308 1p5z_B DCK, deoxycytidine kina 94.2 0.012 4E-07 55.4 1.0 25 247-271 25-49 (263)
309 2it1_A 362AA long hypothetical 94.2 0.02 6.7E-07 57.0 2.6 25 247-271 30-54 (362)
310 3rlf_A Maltose/maltodextrin im 94.1 0.02 6.8E-07 57.3 2.6 25 247-271 30-54 (381)
311 1bif_A 6-phosphofructo-2-kinas 94.1 0.023 7.9E-07 58.3 3.2 26 246-271 39-64 (469)
312 2xzl_A ATP-dependent helicase 94.1 0.033 1.1E-06 61.1 4.6 23 248-270 377-399 (802)
313 4g1u_C Hemin import ATP-bindin 94.1 0.015 5.2E-07 55.2 1.6 26 246-271 37-62 (266)
314 2r8r_A Sensor protein; KDPD, P 94.1 0.025 8.6E-07 52.4 3.1 24 248-271 8-31 (228)
315 2yz2_A Putative ABC transporte 94.1 0.018 6E-07 54.7 2.1 26 246-271 33-58 (266)
316 1ek0_A Protein (GTP-binding pr 94.1 0.026 8.9E-07 48.0 3.0 22 248-269 5-26 (170)
317 2ihy_A ABC transporter, ATP-bi 94.1 0.016 5.4E-07 55.5 1.7 25 247-271 48-72 (279)
318 1w36_D RECD, exodeoxyribonucle 94.1 0.026 8.8E-07 60.0 3.5 24 247-270 165-188 (608)
319 1v43_A Sugar-binding transport 94.1 0.021 7.1E-07 57.0 2.6 25 247-271 38-62 (372)
320 2yyz_A Sugar ABC transporter, 94.1 0.022 7.7E-07 56.5 2.8 25 247-271 30-54 (359)
321 2nq2_C Hypothetical ABC transp 94.1 0.016 5.5E-07 54.6 1.7 25 247-271 32-56 (253)
322 2nzj_A GTP-binding protein REM 94.0 0.022 7.7E-07 48.8 2.5 21 248-268 6-26 (175)
323 1z0j_A RAB-22, RAS-related pro 94.0 0.027 9.3E-07 48.0 3.0 22 248-269 8-29 (170)
324 1z47_A CYSA, putative ABC-tran 94.0 0.019 6.4E-07 57.0 2.2 25 247-271 42-66 (355)
325 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.027 9.2E-07 48.5 3.0 21 248-268 9-29 (177)
326 1u8z_A RAS-related protein RAL 94.0 0.027 9.2E-07 47.7 3.0 23 247-269 5-27 (168)
327 2zej_A Dardarin, leucine-rich 94.0 0.018 6.3E-07 50.5 1.9 22 248-269 4-25 (184)
328 1tf7_A KAIC; homohexamer, hexa 94.0 0.021 7.2E-07 59.5 2.6 29 242-270 277-305 (525)
329 1z08_A RAS-related protein RAB 94.0 0.029 9.8E-07 47.9 3.1 23 247-269 7-29 (170)
330 2ce2_X GTPase HRAS; signaling 94.0 0.024 8.1E-07 47.9 2.5 22 248-269 5-26 (166)
331 2gza_A Type IV secretion syste 93.9 0.016 5.4E-07 57.5 1.4 27 245-271 174-200 (361)
332 1tf7_A KAIC; homohexamer, hexa 93.9 0.022 7.5E-07 59.4 2.5 29 242-270 35-65 (525)
333 1ky3_A GTP-binding protein YPT 93.9 0.029 1E-06 48.3 3.0 23 247-269 9-31 (182)
334 1g8f_A Sulfate adenylyltransfe 93.9 0.027 9.2E-07 58.5 3.1 26 247-272 396-421 (511)
335 2erx_A GTP-binding protein DI- 93.9 0.027 9.3E-07 48.0 2.7 21 248-268 5-25 (172)
336 1g29_1 MALK, maltose transport 93.9 0.021 7.2E-07 57.0 2.2 25 247-271 30-54 (372)
337 2b8t_A Thymidine kinase; deoxy 93.9 0.031 1.1E-06 51.7 3.2 24 248-271 14-37 (223)
338 1r2q_A RAS-related protein RAB 93.8 0.031 1.1E-06 47.5 3.0 21 248-268 8-28 (170)
339 2wjg_A FEOB, ferrous iron tran 93.8 0.028 9.5E-07 49.1 2.7 22 248-269 9-30 (188)
340 1g16_A RAS-related protein SEC 93.8 0.027 9.1E-07 48.0 2.5 21 248-268 5-25 (170)
341 3tmk_A Thymidylate kinase; pho 93.8 0.028 9.5E-07 51.7 2.7 26 247-272 6-31 (216)
342 1c1y_A RAS-related protein RAP 93.8 0.033 1.1E-06 47.3 3.0 21 248-268 5-25 (167)
343 4a1f_A DNAB helicase, replicat 93.7 0.032 1.1E-06 54.9 3.3 30 242-271 42-71 (338)
344 2hxs_A RAB-26, RAS-related pro 93.7 0.031 1.1E-06 48.1 2.9 22 248-269 8-29 (178)
345 3q85_A GTP-binding protein REM 93.7 0.027 9.4E-07 48.1 2.4 20 249-268 5-24 (169)
346 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.021 7.3E-07 55.9 1.9 26 246-271 171-196 (330)
347 3bc1_A RAS-related protein RAB 93.7 0.033 1.1E-06 48.5 3.0 22 247-268 12-33 (195)
348 1r8s_A ADP-ribosylation factor 93.7 0.034 1.2E-06 47.2 3.0 21 249-269 3-23 (164)
349 2ffh_A Protein (FFH); SRP54, s 93.7 0.05 1.7E-06 55.2 4.6 27 245-271 97-123 (425)
350 2j37_W Signal recognition part 93.7 0.031 1.1E-06 58.0 3.1 26 246-271 101-126 (504)
351 3d31_A Sulfate/molybdate ABC t 93.6 0.02 6.9E-07 56.6 1.5 25 247-271 27-51 (348)
352 2pjz_A Hypothetical protein ST 93.6 0.024 8.4E-07 53.7 2.0 25 246-270 30-54 (263)
353 3lv8_A DTMP kinase, thymidylat 93.6 0.033 1.1E-06 51.9 2.9 25 247-271 28-52 (236)
354 3clv_A RAB5 protein, putative; 93.6 0.036 1.2E-06 48.5 3.0 23 247-269 8-30 (208)
355 2dpy_A FLII, flagellum-specifi 93.6 0.044 1.5E-06 55.9 4.0 24 248-271 159-182 (438)
356 4dsu_A GTPase KRAS, isoform 2B 93.6 0.037 1.3E-06 48.1 3.0 22 248-269 6-27 (189)
357 1f2t_A RAD50 ABC-ATPase; DNA d 93.6 0.038 1.3E-06 47.5 3.0 22 249-270 26-47 (149)
358 3ld9_A DTMP kinase, thymidylat 93.5 0.035 1.2E-06 51.4 2.9 25 248-272 23-47 (223)
359 2krk_A 26S protease regulatory 93.5 0.077 2.6E-06 41.3 4.4 48 337-386 7-55 (86)
360 1z0f_A RAB14, member RAS oncog 93.5 0.038 1.3E-06 47.5 3.0 23 247-269 16-38 (179)
361 2lkc_A Translation initiation 93.5 0.044 1.5E-06 47.1 3.4 23 246-268 8-30 (178)
362 2y8e_A RAB-protein 6, GH09086P 93.5 0.032 1.1E-06 47.9 2.5 21 248-268 16-36 (179)
363 3bgw_A DNAB-like replicative h 93.5 0.036 1.2E-06 56.5 3.2 30 242-271 193-222 (444)
364 3cmw_A Protein RECA, recombina 93.5 0.032 1.1E-06 65.6 3.1 30 242-271 728-757 (1706)
365 2f1r_A Molybdopterin-guanine d 93.5 0.017 5.7E-07 51.2 0.6 26 247-272 3-28 (171)
366 3cr8_A Sulfate adenylyltranfer 93.5 0.019 6.4E-07 60.4 1.0 25 247-271 370-394 (552)
367 2efe_B Small GTP-binding prote 93.4 0.041 1.4E-06 47.5 3.1 23 247-269 13-35 (181)
368 2oil_A CATX-8, RAS-related pro 93.4 0.038 1.3E-06 48.6 2.9 23 247-269 26-48 (193)
369 1j8m_F SRP54, signal recogniti 93.4 0.039 1.3E-06 53.2 3.2 26 246-271 98-123 (297)
370 1upt_A ARL1, ADP-ribosylation 93.4 0.049 1.7E-06 46.4 3.5 22 247-268 8-29 (171)
371 2bbs_A Cystic fibrosis transme 93.4 0.023 7.9E-07 54.7 1.5 26 246-271 64-89 (290)
372 1x6v_B Bifunctional 3'-phospho 93.4 0.044 1.5E-06 58.3 3.8 25 246-270 52-76 (630)
373 3gd7_A Fusion complex of cysti 93.4 0.027 9.3E-07 56.5 2.0 27 245-271 46-72 (390)
374 3con_A GTPase NRAS; structural 93.4 0.041 1.4E-06 48.2 3.0 22 248-269 23-44 (190)
375 2a9k_A RAS-related protein RAL 93.4 0.041 1.4E-06 47.6 3.0 23 247-269 19-41 (187)
376 2obl_A ESCN; ATPase, hydrolase 93.3 0.044 1.5E-06 54.1 3.5 24 248-271 73-96 (347)
377 1oxx_K GLCV, glucose, ABC tran 93.3 0.018 6E-07 57.1 0.5 25 247-271 32-56 (353)
378 1ls1_A Signal recognition part 93.3 0.068 2.3E-06 51.4 4.7 26 246-271 98-123 (295)
379 3q72_A GTP-binding protein RAD 93.3 0.033 1.1E-06 47.4 2.1 21 248-268 4-24 (166)
380 2wsm_A Hydrogenase expression/ 93.3 0.039 1.3E-06 49.7 2.8 25 247-271 31-55 (221)
381 2a5y_B CED-4; apoptosis; HET: 93.3 0.11 3.7E-06 54.3 6.5 43 216-268 132-174 (549)
382 2gj8_A MNME, tRNA modification 93.3 0.033 1.1E-06 48.5 2.1 22 248-269 6-27 (172)
383 3tw8_B RAS-related protein RAB 93.2 0.041 1.4E-06 47.4 2.7 22 247-268 10-31 (181)
384 2fn4_A P23, RAS-related protei 93.2 0.038 1.3E-06 47.5 2.5 23 247-269 10-32 (181)
385 2qag_B Septin-6, protein NEDD5 93.2 0.048 1.6E-06 55.3 3.5 22 249-270 45-66 (427)
386 1m8p_A Sulfate adenylyltransfe 93.2 0.038 1.3E-06 58.3 2.9 25 247-271 397-421 (573)
387 2g6b_A RAS-related protein RAB 93.2 0.046 1.6E-06 47.1 3.0 23 247-269 11-33 (180)
388 2bme_A RAB4A, RAS-related prot 93.1 0.039 1.3E-06 48.0 2.5 23 247-269 11-33 (186)
389 2gf9_A RAS-related protein RAB 93.1 0.046 1.6E-06 47.9 3.0 23 247-269 23-45 (189)
390 2npi_A Protein CLP1; CLP1-PCF1 93.1 0.04 1.4E-06 56.5 2.9 29 243-271 135-163 (460)
391 2xxa_A Signal recognition part 93.1 0.04 1.4E-06 56.1 2.8 27 245-271 99-125 (433)
392 1q57_A DNA primase/helicase; d 93.1 0.031 1.1E-06 57.8 2.0 30 242-271 238-267 (503)
393 1m7b_A RND3/RHOE small GTP-bin 93.1 0.039 1.3E-06 48.2 2.5 23 247-269 8-30 (184)
394 3t1o_A Gliding protein MGLA; G 93.1 0.045 1.6E-06 47.8 2.9 23 248-270 16-38 (198)
395 3kkq_A RAS-related protein M-R 93.1 0.047 1.6E-06 47.3 3.0 22 247-268 19-40 (183)
396 4tmk_A Protein (thymidylate ki 93.1 0.042 1.4E-06 50.3 2.7 24 248-271 5-28 (213)
397 1tq4_A IIGP1, interferon-induc 93.1 0.065 2.2E-06 54.2 4.3 24 248-271 71-94 (413)
398 1qhl_A Protein (cell division 93.1 0.015 5.2E-07 54.0 -0.3 23 249-271 30-52 (227)
399 1pui_A ENGB, probable GTP-bind 93.1 0.019 6.5E-07 51.3 0.3 25 246-270 26-50 (210)
400 1mh1_A RAC1; GTP-binding, GTPa 93.1 0.049 1.7E-06 47.2 3.0 21 248-268 7-27 (186)
401 1svi_A GTP-binding protein YSX 93.0 0.034 1.2E-06 48.9 1.9 23 247-269 24-46 (195)
402 3tui_C Methionine import ATP-b 93.0 0.04 1.4E-06 54.8 2.6 26 246-271 54-79 (366)
403 3tkl_A RAS-related protein RAB 93.0 0.05 1.7E-06 47.7 3.0 22 247-268 17-38 (196)
404 2atv_A RERG, RAS-like estrogen 93.0 0.056 1.9E-06 47.7 3.3 23 247-269 29-51 (196)
405 1x3s_A RAS-related protein RAB 92.9 0.052 1.8E-06 47.5 3.0 23 247-269 16-38 (195)
406 2rcn_A Probable GTPase ENGC; Y 92.9 0.039 1.3E-06 54.7 2.3 25 247-271 216-240 (358)
407 2cxx_A Probable GTP-binding pr 92.9 0.034 1.2E-06 48.4 1.8 22 248-269 3-24 (190)
408 3bwd_D RAC-like GTP-binding pr 92.9 0.053 1.8E-06 46.8 3.0 23 247-269 9-31 (182)
409 3k53_A Ferrous iron transport 92.9 0.038 1.3E-06 52.1 2.1 23 247-269 4-26 (271)
410 3c5c_A RAS-like protein 12; GD 92.9 0.054 1.8E-06 47.6 3.0 22 248-269 23-44 (187)
411 1z06_A RAS-related protein RAB 92.9 0.054 1.9E-06 47.4 3.0 22 247-268 21-42 (189)
412 3ihw_A Centg3; RAS, centaurin, 92.9 0.056 1.9E-06 47.5 3.1 21 248-268 22-42 (184)
413 2iwr_A Centaurin gamma 1; ANK 92.8 0.041 1.4E-06 47.5 2.2 22 248-269 9-30 (178)
414 1zd9_A ADP-ribosylation factor 92.8 0.054 1.9E-06 47.5 3.0 22 248-269 24-45 (188)
415 2bov_A RAla, RAS-related prote 92.8 0.054 1.8E-06 47.9 3.0 23 247-269 15-37 (206)
416 3cmu_A Protein RECA, recombina 92.8 0.046 1.6E-06 65.1 3.1 30 242-271 379-408 (2050)
417 3nh6_A ATP-binding cassette SU 92.8 0.024 8.2E-07 55.0 0.6 28 244-271 78-105 (306)
418 1m2o_B GTP-binding protein SAR 92.8 0.046 1.6E-06 48.3 2.5 22 247-268 24-45 (190)
419 3qks_A DNA double-strand break 92.8 0.051 1.7E-06 49.2 2.8 25 248-272 25-49 (203)
420 1vg8_A RAS-related protein RAB 92.8 0.056 1.9E-06 47.9 3.0 23 247-269 9-31 (207)
421 1zbd_A Rabphilin-3A; G protein 92.8 0.05 1.7E-06 48.2 2.7 22 247-268 9-30 (203)
422 3cph_A RAS-related protein SEC 92.7 0.057 1.9E-06 48.1 3.0 22 247-268 21-42 (213)
423 2a5j_A RAS-related protein RAB 92.7 0.057 1.9E-06 47.5 2.9 22 248-269 23-44 (191)
424 3p32_A Probable GTPase RV1496/ 92.7 0.056 1.9E-06 53.3 3.2 24 247-270 80-103 (355)
425 2fg5_A RAB-22B, RAS-related pr 92.7 0.05 1.7E-06 48.0 2.5 23 247-269 24-46 (192)
426 2p5s_A RAS and EF-hand domain 92.7 0.057 1.9E-06 47.9 2.9 23 247-269 29-51 (199)
427 3reg_A RHO-like small GTPase; 92.7 0.059 2E-06 47.4 3.0 23 247-269 24-46 (194)
428 1c9k_A COBU, adenosylcobinamid 92.7 0.048 1.6E-06 48.7 2.4 21 249-269 2-22 (180)
429 3dz8_A RAS-related protein RAB 92.6 0.05 1.7E-06 47.8 2.5 22 248-269 25-46 (191)
430 3pqc_A Probable GTP-binding pr 92.6 0.042 1.4E-06 48.0 1.9 23 247-269 24-46 (195)
431 1ksh_A ARF-like protein 2; sma 92.6 0.046 1.6E-06 47.6 2.1 23 246-268 18-40 (186)
432 3lxx_A GTPase IMAP family memb 92.5 0.056 1.9E-06 49.7 2.7 23 247-269 30-52 (239)
433 3t5g_A GTP-binding protein RHE 92.5 0.054 1.8E-06 46.9 2.5 22 247-268 7-28 (181)
434 1u0l_A Probable GTPase ENGC; p 92.5 0.043 1.5E-06 52.9 1.9 25 247-271 170-194 (301)
435 1f6b_A SAR1; gtpases, N-termin 92.5 0.071 2.4E-06 47.4 3.3 21 248-268 27-47 (198)
436 2bcg_Y Protein YP2, GTP-bindin 92.4 0.055 1.9E-06 48.1 2.5 23 247-269 9-31 (206)
437 2fu5_C RAS-related protein RAB 92.4 0.041 1.4E-06 47.7 1.5 22 247-268 9-30 (183)
438 3oes_A GTPase rhebl1; small GT 92.4 0.057 1.9E-06 48.0 2.5 22 247-268 25-46 (201)
439 2hf9_A Probable hydrogenase ni 92.3 0.06 2E-06 48.7 2.6 25 247-271 39-63 (226)
440 2gf0_A GTP-binding protein DI- 92.2 0.062 2.1E-06 47.2 2.5 22 247-268 9-30 (199)
441 2fh5_B SR-beta, signal recogni 92.2 0.073 2.5E-06 47.6 3.0 23 247-269 8-30 (214)
442 1knx_A Probable HPR(Ser) kinas 92.1 0.055 1.9E-06 52.6 2.2 23 246-268 147-169 (312)
443 1gwn_A RHO-related GTP-binding 92.1 0.062 2.1E-06 48.3 2.5 23 247-269 29-51 (205)
444 2gks_A Bifunctional SAT/APS ki 92.1 0.071 2.4E-06 55.9 3.1 25 247-271 373-397 (546)
445 2vp4_A Deoxynucleoside kinase; 92.1 0.055 1.9E-06 49.7 2.1 22 248-269 22-43 (230)
446 2qtf_A Protein HFLX, GTP-bindi 92.1 0.11 3.9E-06 51.4 4.5 22 248-269 181-202 (364)
447 1moz_A ARL1, ADP-ribosylation 92.1 0.071 2.4E-06 46.1 2.7 22 246-267 18-39 (183)
448 3ice_A Transcription terminati 92.0 0.086 2.9E-06 52.8 3.5 25 247-271 175-199 (422)
449 2cjw_A GTP-binding protein GEM 92.0 0.084 2.9E-06 46.8 3.1 22 248-269 8-29 (192)
450 2ew1_A RAS-related protein RAB 92.0 0.067 2.3E-06 47.9 2.5 23 247-269 27-49 (201)
451 1zj6_A ADP-ribosylation factor 91.9 0.062 2.1E-06 47.0 2.1 23 246-268 16-38 (187)
452 2yv5_A YJEQ protein; hydrolase 91.9 0.074 2.5E-06 51.3 2.8 24 247-271 166-189 (302)
453 2q3h_A RAS homolog gene family 91.9 0.07 2.4E-06 47.2 2.4 23 247-269 21-43 (201)
454 1fzq_A ADP-ribosylation factor 91.8 0.064 2.2E-06 46.9 2.1 23 247-269 17-39 (181)
455 2f7s_A C25KG, RAS-related prot 91.8 0.071 2.4E-06 47.8 2.4 22 247-268 26-47 (217)
456 2p67_A LAO/AO transport system 91.8 0.087 3E-06 51.6 3.3 25 246-270 56-80 (341)
457 1yqt_A RNAse L inhibitor; ATP- 91.8 0.079 2.7E-06 55.4 3.1 27 245-271 46-72 (538)
458 2atx_A Small GTP binding prote 91.7 0.076 2.6E-06 46.6 2.5 22 248-269 20-41 (194)
459 2fv8_A H6, RHO-related GTP-bin 91.7 0.075 2.6E-06 47.4 2.5 22 247-268 26-47 (207)
460 3b1v_A Ferrous iron uptake tra 91.7 0.073 2.5E-06 50.6 2.5 22 248-269 5-26 (272)
461 2h17_A ADP-ribosylation factor 91.7 0.058 2E-06 47.0 1.7 22 248-269 23-44 (181)
462 3euj_A Chromosome partition pr 91.7 0.1 3.6E-06 53.7 3.8 25 247-271 30-54 (483)
463 2o52_A RAS-related protein RAB 91.7 0.064 2.2E-06 47.7 1.9 22 247-268 26-47 (200)
464 3a1s_A Iron(II) transport prot 91.6 0.077 2.6E-06 49.9 2.6 22 247-268 6-27 (258)
465 2qu8_A Putative nucleolar GTP- 91.6 0.07 2.4E-06 48.6 2.1 23 247-269 30-52 (228)
466 1ko7_A HPR kinase/phosphatase; 91.5 0.079 2.7E-06 51.5 2.6 24 246-269 144-167 (314)
467 3cbq_A GTP-binding protein REM 91.5 0.073 2.5E-06 47.3 2.1 21 248-268 25-45 (195)
468 2gco_A H9, RHO-related GTP-bin 91.5 0.082 2.8E-06 46.9 2.5 23 247-269 26-48 (201)
469 3cpj_B GTP-binding protein YPT 91.4 0.097 3.3E-06 47.4 3.0 23 247-269 14-36 (223)
470 2b6h_A ADP-ribosylation factor 91.4 0.081 2.8E-06 46.7 2.4 22 247-268 30-51 (192)
471 2il1_A RAB12; G-protein, GDP, 91.4 0.089 3E-06 46.3 2.6 21 248-268 28-48 (192)
472 2hup_A RAS-related protein RAB 91.4 0.084 2.9E-06 47.0 2.5 23 247-269 30-52 (201)
473 4hlc_A DTMP kinase, thymidylat 91.4 0.11 3.7E-06 47.2 3.2 23 249-271 5-27 (205)
474 4bas_A ADP-ribosylation factor 91.4 0.093 3.2E-06 46.0 2.7 22 247-268 18-39 (199)
475 1qde_A EIF4A, translation init 91.4 0.14 4.6E-06 46.3 3.9 59 209-270 14-76 (224)
476 1yrb_A ATP(GTP)binding protein 91.3 0.11 3.7E-06 48.2 3.2 25 247-271 15-39 (262)
477 2j1l_A RHO-related GTP-binding 91.2 0.075 2.6E-06 47.8 2.0 22 247-268 35-56 (214)
478 3iby_A Ferrous iron transport 91.2 0.085 2.9E-06 49.5 2.4 22 248-269 3-24 (256)
479 2j0v_A RAC-like GTP-binding pr 91.2 0.092 3.1E-06 46.9 2.5 22 248-269 11-32 (212)
480 3b5x_A Lipid A export ATP-bind 91.1 0.095 3.2E-06 55.2 2.9 28 244-271 367-394 (582)
481 2h57_A ADP-ribosylation factor 91.1 0.053 1.8E-06 47.6 0.8 22 248-269 23-44 (190)
482 2gxq_A Heat resistant RNA depe 91.1 0.081 2.8E-06 47.0 2.0 51 210-263 2-55 (207)
483 3q3j_B RHO-related GTP-binding 91.1 0.11 3.8E-06 46.8 3.0 21 248-268 29-49 (214)
484 2qnr_A Septin-2, protein NEDD5 91.0 0.067 2.3E-06 51.5 1.5 22 248-269 20-41 (301)
485 3qf7_A RAD50; ABC-ATPase, ATPa 91.0 0.11 3.9E-06 51.3 3.2 23 248-270 25-47 (365)
486 2qag_C Septin-7; cell cycle, c 91.0 0.084 2.9E-06 53.4 2.2 22 249-270 34-55 (418)
487 4gzl_A RAS-related C3 botulinu 90.9 0.099 3.4E-06 46.7 2.5 22 247-268 31-52 (204)
488 2yc2_C IFT27, small RAB-relate 90.9 0.052 1.8E-06 48.0 0.6 22 248-269 22-43 (208)
489 4i1u_A Dephospho-COA kinase; s 90.9 0.12 4.2E-06 47.2 3.0 26 248-274 11-36 (210)
490 2e87_A Hypothetical protein PH 90.9 0.2 6.8E-06 49.3 4.8 24 246-269 167-190 (357)
491 3szr_A Interferon-induced GTP- 90.9 0.2 6.8E-06 53.1 5.1 22 249-270 48-69 (608)
492 3lxw_A GTPase IMAP family memb 90.8 0.11 3.6E-06 48.4 2.6 23 247-269 22-44 (247)
493 1ega_A Protein (GTP-binding pr 90.7 0.11 3.6E-06 50.1 2.6 22 248-269 10-31 (301)
494 1t6n_A Probable ATP-dependent 90.6 0.11 3.6E-06 46.9 2.3 60 206-268 11-73 (220)
495 3llu_A RAS-related GTP-binding 90.5 0.099 3.4E-06 46.2 2.0 23 247-269 21-43 (196)
496 3qf4_B Uncharacterized ABC tra 90.5 0.11 3.7E-06 55.0 2.6 29 243-271 378-406 (598)
497 3iev_A GTP-binding protein ERA 90.4 0.12 4.3E-06 49.7 2.8 25 245-269 8-33 (308)
498 3l0o_A Transcription terminati 90.4 0.13 4.4E-06 51.5 2.9 28 244-271 171-200 (427)
499 1h65_A Chloroplast outer envel 90.4 0.26 8.8E-06 46.3 4.9 22 247-268 40-61 (270)
500 3bor_A Human initiation factor 90.4 0.082 2.8E-06 48.6 1.4 54 207-263 28-84 (237)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=299.32 Aligned_cols=177 Identities=25% Similarity=0.322 Sum_probs=145.3
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------ 279 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------ 279 (436)
.|..+|+||+|.+++|++|.+.+..|+.+|+.|.++|+++|+|+|||||||||||++|+|+|++++..+.....
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 45579999999999999999999999999999999999999999999999999999999999999933221110
Q ss_pred -------------------CCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 280 -------------------DGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 280 -------------------~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
.++ ..+....++++.||+.|||+... ++++||+|||+|+.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLDI 299 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSSS
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCChhh
Confidence 000 01112345788999999999765 45999999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
||||++||||||++|+||+|+.++|..||+.++.... .....++..++..+ +||+|||...|.
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN--LTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB--CCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC--CCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999987653 22223455666554 599999998874
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-35 Score=298.05 Aligned_cols=180 Identities=25% Similarity=0.340 Sum_probs=146.4
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc----
Q 013823 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ---- 278 (436)
Q Consensus 203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~---- 278 (436)
+...+..+|+||+|.+++|++|.+.+..|+.+++.|.++|+++|+|||||||||||||++|+|+|++++..+....
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 3345667999999999999999999999999999999999999999999999999999999999999993322111
Q ss_pred ---------------------CC-------------------CCCCCCCcceeecceeecccCcccCCCCeEEEEEecCC
Q 013823 279 ---------------------ND-------------------GASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNH 318 (436)
Q Consensus 279 ---------------------~~-------------------~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~ 318 (436)
.. ....+.....+++.||+.|||+... ++++||+|||+
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNr 330 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNK 330 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESC
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCC
Confidence 00 0011122346788999999998765 45999999999
Q ss_pred cCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 319 KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 319 ~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
|+.|||||+||||||++|+||+|+.++|..||+.++.... .....++..|+..+ +||+|||..+|.
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999997642 11222455566544 599999998874
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=296.84 Aligned_cols=178 Identities=26% Similarity=0.364 Sum_probs=145.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-----
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN----- 279 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~----- 279 (436)
-.+..+|+||+|.+++|+.|.+.+..|+.+++.|.++|+++|+|+|||||||||||++|+|||++++.++.....
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 345579999999999999999999999999999999999999999999999999999999999999933221110
Q ss_pred ---------------------------------------CCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823 280 ---------------------------------------DGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320 (436)
Q Consensus 280 ---------------------------------------~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~ 320 (436)
.+...+.....+++.||+.|||+.+. ++++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence 00011122345778899999999765 4599999999999
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
.|||||+||||||.+|+||+|+.++|..||+.++.... .....++..++..+ +||+|||..+|.
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~--~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK--KTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC--BCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999987642 22223456666655 599999998874
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=295.30 Aligned_cols=179 Identities=22% Similarity=0.287 Sum_probs=145.7
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCC---
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQND--- 280 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~--- 280 (436)
.-.++.+|+||+|.+++|+.|.+.+..|+.+++.|.++|+++|+|+|||||||||||++|+|+|++++..+......
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34566899999999999999999999999999999999999999999999999999999999999999332211110
Q ss_pred ----------------------CC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCc
Q 013823 281 ----------------------GA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHK 319 (436)
Q Consensus 281 ----------------------~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~ 319 (436)
++ ........+++.||+.|||+.+. ++++||+|||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCc
Confidence 00 00112345678899999999765 459999999999
Q ss_pred CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 320 ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 320 ~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
+.||||++||||||++|+||+|+.++|..||+.++...... ...++..|+..+ +||+|||...|.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~--~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD--DDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC--SCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC--CcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998754211 112345555544 599999998875
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-34 Score=293.07 Aligned_cols=178 Identities=25% Similarity=0.381 Sum_probs=145.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ------ 278 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~------ 278 (436)
-.+..+|+||+|.+++|+.|.+.+..|+.+++.|.++|+++|+|+|||||||||||++|+|+|++++..+....
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 34557999999999999999999999999999999999999999999999999999999999999993222111
Q ss_pred --------------------------------------CCCCCCCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823 279 --------------------------------------NDGASVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320 (436)
Q Consensus 279 --------------------------------------~~~~~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~ 320 (436)
......+....+++++||+.|||+.+.. +++||+|||+|+
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~--~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST--NVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC--SEEEEEEESCSS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC--CEEEEEecCChh
Confidence 0011112234567899999999998764 499999999999
Q ss_pred CCCccccCCCceeEEEEcC-CCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 321 RIDPALLRPGRMDVHINMS-YCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~-~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
.||||++||||||++|+|| +|+.++|..||+.++.... .....++..++..+ +||+|||...|.
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999996 8999999999999987542 11122355666544 699999998875
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-34 Score=293.48 Aligned_cols=177 Identities=23% Similarity=0.274 Sum_probs=143.5
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------ 279 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------ 279 (436)
.|..+|+||+|.+++|++|.+.+..++.+++.|.++|+++|+|+|||||||||||++|+|||++++..+.....
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 44579999999999999999999999999999999999999999999999999999999999999933221110
Q ss_pred -------------------CCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 280 -------------------DGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 280 -------------------~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
.++ ........+++.||+.||++... ++++||+|||+|+.
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPNT 360 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTTS
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCccc
Confidence 000 00112345678899999998765 45999999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
||||++||||||++|+||+|+.++|..||+.++.... .....+++.|+..+ +||+|||..+|.
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--VERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC--BCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999987652 11112345555544 599999998874
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.95 E-value=1e-29 Score=277.32 Aligned_cols=177 Identities=24% Similarity=0.334 Sum_probs=128.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhc---------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKD--------- 276 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~--------- 276 (436)
.+..+|++|+|.+++|+.|.+.+..++.+++.|.+.|..+++|+|||||||||||++|+|+|++++..+..
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999922211
Q ss_pred ----------------ccCCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 277 ----------------RQNDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 277 ----------------r~~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
+...++ ..+....+++++||++|||+.+. ++++||+|||+|+.
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDI 628 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSSS
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCCchh
Confidence 111111 11234567889999999999765 45999999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
||||++||||||.+|+||+|+.++|..||+.++.... .....++..|+..+ +||+|||.++|.
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~--~~~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP--VAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC----CCC----------------CHHHHHH
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999997652 22234566677665 499999999886
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.94 E-value=1.1e-27 Score=261.26 Aligned_cols=176 Identities=26% Similarity=0.307 Sum_probs=144.6
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc---------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR--------- 277 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r--------- 277 (436)
+..+|++|+|.+++|++|.+.+..++.+++.|..+|..+|+|+|||||||||||+||+++|++++..++..
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999222111
Q ss_pred ----------------cCCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823 278 ----------------QNDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA 325 (436)
Q Consensus 278 ----------------~~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A 325 (436)
...++ ..+...++++++||..||++... ..++||+|||+++.||||
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD~A 356 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSCTT
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcCHH
Confidence 00000 11234456788999999999765 459999999999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
|+||||||+.|+|+.|+.++|..|++.++.... .....++..++..+ +|+++||...|.
T Consensus 357 LrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~~T~GfsgaDL~~Lv~ 416 (806)
T 3cf2_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp TTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred HhCCcccceEEecCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999987542 22233456666654 599999988775
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=217.55 Aligned_cols=178 Identities=21% Similarity=0.274 Sum_probs=130.9
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------- 279 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------- 279 (436)
+..+|++|+|.+++|+.|.+.+..++.+++.+..+|+..++|++|+||||||||+|+++||++++..+.....
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 4568999999999999999999999999999999999999999999999999999999999998722111100
Q ss_pred ------------------CCC-----C-----------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823 280 ------------------DGA-----S-----------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA 325 (436)
Q Consensus 280 ------------------~~~-----~-----------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A 325 (436)
.++ + .........+.++..|+|.... ..++++++||+|+.||+|
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPA 162 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST--TCEEEEEEESCGGGSCHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc--CCEEEEeecCChhhCCHh
Confidence 000 0 0001123445677778877543 448999999999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCC-CCCcHHHHHhhhhc---CCCCHHHHHHHHh
Q 013823 326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGK-SHSLFGEIEGLIQS---TDVTPAEVAEELM 386 (436)
Q Consensus 326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~-~~~~~~~i~~l~~~---~~~tpaei~~~l~ 386 (436)
++||||||.+|++++|+.++|..|++.++..... ......+++.++.. .+||+|||...|.
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 9999999999999999999999999999854210 11112234455543 3799999998875
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.92 E-value=3.2e-24 Score=210.64 Aligned_cols=177 Identities=23% Similarity=0.315 Sum_probs=139.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc-------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ------- 278 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~------- 278 (436)
.++.+|++|+|.+++|+.|.+.+..++..++.|..+|+.+++++|||||||||||++|+++|++++..+....
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4567899999999999999999999999999999999999999999999999999999999999882221100
Q ss_pred ------------------CCCC-------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 279 ------------------NDGA-------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 279 ------------------~~~~-------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
..++ ..+......++.||..||++... .+++||+|||+++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~--~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT--SSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC--CCEEEEEecCCccc
Confidence 0000 00112234567788899987643 45999999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~ 386 (436)
||++++|||||+..|+++.|+.++|..|++.++...+.. ...++..++.. .+++++||...|.
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~--~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA--KDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC--SSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC--ccchHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999765311 11223344433 4699999988774
No 11
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=193.46 Aligned_cols=176 Identities=26% Similarity=0.346 Sum_probs=126.8
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-----
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA----- 282 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~----- 282 (436)
+.+|++|+|.+++|+.|.+.+. ++..++.|...|...++++|||||||||||++|+++|++++..+........
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 5689999999999999988765 5778888999999999999999999999999999999998843322111100
Q ss_pred -------------------------CC---------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823 283 -------------------------SV---------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI 322 (436)
Q Consensus 283 -------------------------~~---------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l 322 (436)
+. .......+..|++.+++.... ..+++|+|||.++.+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT--DHVIVLASTNRADIL 158 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT--CCEEEEEEESCGGGG
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC--CCEEEEecCCChhhc
Confidence 00 011223345566666765432 458999999999999
Q ss_pred CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
|++++|||||+..++++.|+.++|..|+++++...+...........++... ++++++|...+.
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999876532222222235555544 599999987764
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.88 E-value=2.6e-23 Score=215.93 Aligned_cols=175 Identities=27% Similarity=0.346 Sum_probs=134.7
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC-----
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG----- 281 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~----- 281 (436)
++.+|++|+|.++.|+++.+.+. ++..+..|.++|...++|+||+||||||||++|+++|++++.++.......
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 34689999999999999988765 677889999999999999999999999999999999999984332221110
Q ss_pred --------------------C-----C--------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823 282 --------------------A-----S--------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI 322 (436)
Q Consensus 282 --------------------~-----~--------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l 322 (436)
+ + .+.....+++.||..||++... .+++||+|||+++.|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDIL 167 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG--GTEEEEEEESCGGGS
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC--CCEEEEEecCChhhh
Confidence 0 0 0011124567788888877543 459999999999999
Q ss_pred CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
|++++||||||..|.++.|+.++|..|++.++...... ...++..++... +++++||...|.
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~--~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA--EDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC--TTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc--chhhHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999999999999999999999998754211 112244455544 589999988663
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=1e-22 Score=197.25 Aligned_cols=178 Identities=24% Similarity=0.286 Sum_probs=136.3
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC---
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG--- 281 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~--- 281 (436)
..++.+|++|+|.+++++.|.+.+..++..++.|...|...++++|||||||||||++|+++|+.++..+.......
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999983322111000
Q ss_pred ----------------------C-----C--------------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823 282 ----------------------A-----S--------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320 (436)
Q Consensus 282 ----------------------~-----~--------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~ 320 (436)
+ + ........+..+++.++++... ..++||+|||.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR--GDVKIIGATNRPD 167 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS--SSEEEEEECSCGG
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCCch
Confidence 0 0 0011123444556666665443 4589999999999
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
.+|++++|||||+..++++.|+.+++..|++.++.... .....++..++... ++++++|...+.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN--LAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC--CCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999987542 11222344454433 589999988664
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.88 E-value=7.8e-23 Score=202.82 Aligned_cols=176 Identities=19% Similarity=0.206 Sum_probs=136.4
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh-cchhhcccCC----
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-SVEMKDRQND---- 280 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~r~~~---- 280 (436)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +..+......
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 34578999999999999999999999999988874 35667999999999999999999999998 5222111100
Q ss_pred ---------------------CC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCC
Q 013823 281 ---------------------GA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERID 323 (436)
Q Consensus 281 ---------------------~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD 323 (436)
.+ .........++.|+..+|++... ...++||+|||+++.||
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLD 163 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCcccCC
Confidence 00 00011223456678888887532 35699999999999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
++++| ||+..|+++.|+.++|..|++.++...+ ......++..++..+ ++++++|..+|.
T Consensus 164 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 164 SAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQ-NSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCC-BCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999 9999999999999999999999987652 222456777787765 599999998775
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.87 E-value=3.4e-22 Score=197.94 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=139.0
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc----
Q 013823 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ---- 278 (436)
Q Consensus 203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~---- 278 (436)
+...++.+|++|+|.+++|+.|.+.+..++..++.+.. +..+++|+|||||||||||++|+++|++++..+....
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 34566789999999999999999999999998888776 4566789999999999999999999999883221110
Q ss_pred ---------------------CCCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 279 ---------------------NDGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 279 ---------------------~~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
..++ ..........+.|+..++++... ...++||+|||+++.
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQ 166 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGG
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhh
Confidence 0000 00112234456788888887532 346899999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
||++++| ||+..|+++.|+.++|..|++.++.... ......++..++..+ ++++++|..+|.
T Consensus 167 ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP-CVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp SCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCC-CCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999 9999999999999999999999987652 223456777777765 499999988775
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.87 E-value=4.5e-22 Score=190.25 Aligned_cols=176 Identities=25% Similarity=0.353 Sum_probs=126.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA--- 282 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~--- 282 (436)
.++.+|++|+|.+++|+.+.+.+. ++..++.|...|...++|+||+||||||||++|+++|++++.++........
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 456789999999999999988665 5777888888899999999999999999999999999998833322211100
Q ss_pred ----------------------------------CC-------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 283 ----------------------------------SV-------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 283 ----------------------------------~~-------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
.. .......++.++..+|++... ..++||+|||+++.
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDV 162 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS--SCEEEEEEESCTTT
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC--CCEEEEEeeCCchh
Confidence 00 000012345566677776543 45899999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
+|++++|||||+..|+++.|+.++|..|++.++.... .....++..++... +++++||...+.
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999986542 11112233344443 479999987664
No 17
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.86 E-value=1.1e-21 Score=188.45 Aligned_cols=177 Identities=27% Similarity=0.376 Sum_probs=132.4
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC----
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG---- 281 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~---- 281 (436)
.++.+|++|+|.+++++.+.+.+. ++..++.|..+|...++|+|||||||||||++|+++|++++.++.......
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 345689999999999999988665 578889999999999999999999999999999999999884433221110
Q ss_pred ---------------------C-----CC---------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823 282 ---------------------A-----SV---------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320 (436)
Q Consensus 282 ---------------------~-----~~---------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~ 320 (436)
+ +. .......++.|++.+++.... ...++||+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATNRPE 162 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBSCCT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEecCCch
Confidence 0 00 001123456677777776432 34589999999999
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
.+|++++|||||+..|+|+.|+.++|..+++.++..... ....++..++... ++++++|...+.
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL--ANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC--CSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC--CCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999865421 1112234444433 488888877663
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.85 E-value=1.7e-21 Score=195.73 Aligned_cols=176 Identities=18% Similarity=0.216 Sum_probs=134.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------ 279 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------ 279 (436)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++..+.....
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45678999999999999999999999998888876 56677899999999999999999999999833221100
Q ss_pred -------------------CCC-----CC-----------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 280 -------------------DGA-----SV-----------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 280 -------------------~~~-----~~-----------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
..+ +. ........+.||..||++... ...++||+|||+++.||+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ld~ 202 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLDS 202 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSCH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCcccCCH
Confidence 000 00 011123456677778776432 345899999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
+++| ||+..|+++.|+.++|..|++.++...+ ......++..|+..+ ++++++|..+|.
T Consensus 203 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 203 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTP-SVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSC-BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999 9999999999999999999999997652 122355677777655 499999998775
No 19
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.85 E-value=5.3e-21 Score=182.46 Aligned_cols=176 Identities=26% Similarity=0.361 Sum_probs=128.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc--------
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-------- 277 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-------- 277 (436)
.++.+|++++|.++.+..+.+.+. .+..+..+..++...++|++|+||||||||+|+++||+.++......
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 445699999999999999987655 45677889999999999999999999999999999999876211100
Q ss_pred ---------------c--CCCC-----CC--------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 278 ---------------Q--NDGA-----SV--------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 278 ---------------~--~~~~-----~~--------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
. ...+ +. .......++.+++.++|.... ..++++++||+|+.
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~--~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPDI 166 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT--CCEEEEEEESCGGG
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC--CCEEEEEccCCchh
Confidence 0 0000 00 000112345667777766542 34788999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
||++++||||||..|+++.|+.++|..|++.+..... .....++..++... +++++||...+.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC--CCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999999999999999999998875431 11122244455544 588889887664
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.85 E-value=2.4e-21 Score=200.26 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=135.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh-cchhhcccCC---
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-SVEMKDRQND--- 280 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~r~~~--- 280 (436)
..++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +..+......
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 345679999999999999999999999988887764 34567999999999999999999999998 5222111100
Q ss_pred ----------------------CC-----C-----------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823 281 ----------------------GA-----S-----------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI 322 (436)
Q Consensus 281 ----------------------~~-----~-----------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l 322 (436)
.+ + .........+.||..||++... ...++||+|||+++.|
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn~~~~l 284 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVL 284 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEESCGGGS
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC-CCCEEEEecCCCcccc
Confidence 00 0 0011234556788888887532 3569999999999999
Q ss_pred CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
|++++| ||+..|+++.|+.++|..|++.++...+ ......++..|+..+ ++++++|..+|.
T Consensus 285 d~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 285 DSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQ-NSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC-EECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999 9999999999999999999999987642 122346677777655 599999998775
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.84 E-value=4.8e-21 Score=199.95 Aligned_cols=175 Identities=26% Similarity=0.362 Sum_probs=131.6
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------- 279 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------- 279 (436)
++.+|++|+|.++.|+.+.+.+. ++..+..|..+|...++|+||+||||||||+|+++||++++..+.....
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 56799999999999999988655 6777888999999999999999999999999999999998722211100
Q ss_pred ------------------CCC-----CC--------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCCC
Q 013823 280 ------------------DGA-----SV--------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERI 322 (436)
Q Consensus 280 ------------------~~~-----~~--------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~l 322 (436)
.++ +. ......+++.||..|||.... ..++++++||+|+.|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~--~~viviAatn~p~~L 182 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPDIL 182 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS--CCCEEEECCSCGGGS
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC--ccEEEEEecCChhhc
Confidence 000 00 000123456778888877543 448999999999999
Q ss_pred CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
|++++||||||.+|+++.|+.++|..|++.++.... .....++..++... +++++||.+.+.
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~--l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC--CCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999998875431 11122234445443 589999988763
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.84 E-value=6e-21 Score=199.27 Aligned_cols=176 Identities=24% Similarity=0.294 Sum_probs=137.6
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------- 279 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------- 279 (436)
.+.+|++|+|.+..++.|.+.+..++..++.|..+|.+.++++|||||||||||++|+++|++++..+.....
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 4568999999999999999999999999999999999999999999999999999999999998833221110
Q ss_pred ------------------CCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823 280 ------------------DGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA 325 (436)
Q Consensus 280 ------------------~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A 325 (436)
.++ ..+.......+.||..|+++... ..++||+|||+++.||++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~--~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT--SCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC--CceEEEEecCCccccCHH
Confidence 000 00111224556678888876543 459999999999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823 326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 386 (436)
Q Consensus 326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~ 386 (436)
++|||||+..|+++.|+.++|..|++.++.... .....++..++.. .+++++++...+.
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~--l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC--CcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 999999999999999999999999999986542 1122234455544 3599999987664
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.81 E-value=4.1e-20 Score=187.62 Aligned_cols=180 Identities=23% Similarity=0.264 Sum_probs=134.3
Q ss_pred cccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC
Q 013823 203 INLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA 282 (436)
Q Consensus 203 ~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~ 282 (436)
+...+|.+|++|+|.+.+++.|.+.+..++..++.|...+ ..++++|||||||||||++|++||++++..+........
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 4456788999999999999999999999988888887776 346899999999999999999999999855443322211
Q ss_pred CC-----------------------------------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 283 SV-----------------------------------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 283 ~~-----------------------------------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
.. ..........|+..++++.......++||+|||+++.
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 00 0011223334555556554433456899999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
||++++| ||+.+|+++.|+.++|..|+..++...+ .......+..++... ++++++|..++.
T Consensus 265 l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 265 LDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC-CCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999 9999999999999999999999987653 233445666776654 589988877663
No 24
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.81 E-value=1e-19 Score=176.12 Aligned_cols=177 Identities=26% Similarity=0.357 Sum_probs=127.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR------- 277 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r------- 277 (436)
..++.+|++++|.+++++.+.+.+. .+..+..+..++...++|++|+||||||||+|+++||+.++......
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 3466799999999999999987655 55677889999999999999999999999999999999876111100
Q ss_pred ------------------cCCCC-----CC--------------CCCcceeecceeecccCcccCCCCeEEEEEecCCcC
Q 013823 278 ------------------QNDGA-----SV--------------GSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE 320 (436)
Q Consensus 278 ------------------~~~~~-----~~--------------~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~ 320 (436)
..... +. .......+..+++.+++.... ..++++++||+|+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~--~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPD 189 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT--CCEEEEEEESCTT
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC--CCEEEEEecCCch
Confidence 00000 00 000122344566667765432 3478899999999
Q ss_pred CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 321 RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 321 ~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
.||++++|||||+.+|+|+.|+.++|..|++.++.... .....++..++... +++++||...+.
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC--CCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999998875431 11112234444443 588888877664
No 25
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.81 E-value=2e-22 Score=222.26 Aligned_cols=177 Identities=23% Similarity=0.321 Sum_probs=134.1
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA--- 282 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~--- 282 (436)
.+..+|++++|.+++|+.|.+.+..++..++.|..+|+.+++++|||||||||||++|++||++++..+........
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 34568999999999999999998888888888888899999999999999999999999999999843322211110
Q ss_pred ----------------------------------CCC-------CCcceeecceeecccCcccCCCCeEEEEEecCCcCC
Q 013823 283 ----------------------------------SVG-------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKER 321 (436)
Q Consensus 283 ----------------------------------~~~-------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 321 (436)
..+ .....+++.||+.||++... ..++||+|||+++.
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDI 628 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGG
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc--CCeEEEEecCCccc
Confidence 000 01234667899999998654 45899999999999
Q ss_pred CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 322 IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 322 lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
||+|++|||||+.+|+|++|+.++|..||+.++.... .....++..++... ++|+++|..+|.
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP--VAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC--CCcccCHHHHHHhccccCHHHHHHHHH
Confidence 9999999999999999999999999999999986542 11122334455433 599999988775
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.81 E-value=4e-20 Score=185.73 Aligned_cols=177 Identities=20% Similarity=0.245 Sum_probs=132.9
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA--- 282 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~--- 282 (436)
.++.+|++|+|.+++++.|.+.+..++..++.|...+ ..++++||+||||||||++|+++|++++..+........
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3567899999999999999999998888888777665 567899999999999999999999999843322111100
Q ss_pred --------------------------------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc
Q 013823 283 --------------------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP 324 (436)
Q Consensus 283 --------------------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 324 (436)
..........+.||..+++........++||+|||.++.||+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~ 236 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE 236 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCH
Confidence 000112233456777777775444566899999999999999
Q ss_pred cccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 325 ALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 325 AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
+++| ||+..++++.|+.++|..++..++...+ .......+..++..+ ++++++|...|.
T Consensus 237 ~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 237 AARR--RLVKRLYIPLPEASARKQIVINLMSKEQ-CCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSC-BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999 9999999999999999999999886542 223345667777655 589999988764
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.80 E-value=7.3e-20 Score=178.28 Aligned_cols=177 Identities=23% Similarity=0.266 Sum_probs=129.4
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC--
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS-- 283 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~-- 283 (436)
.++.+|++|+|.+++++.|.+.+..++..++.|...+ .+++++||+||||||||++|+++|++++..+.........
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4577999999999999999999998888888777665 4568999999999999999999999998443322211100
Q ss_pred ----------------------------C-----------CCCcceeecceeecccCcccC-CCCeEEEEEecCCcCCCC
Q 013823 284 ----------------------------V-----------GSNTKLTLSGILNFIDGLWSS-CGDERIIVFTTNHKERID 323 (436)
Q Consensus 284 ----------------------------~-----------~~~~~~~~s~LL~~ldg~~~~-~~~~~ivI~TTN~~~~lD 323 (436)
. ........+.|+..+|+.... .+..++||+|||+++.+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 0 000112233455566655432 124589999999999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
++++| ||+..++++.|+.++|..|++.++...+ .......+..++..+ +++++++...+.
T Consensus 174 ~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQG-SPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp HHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGS-CCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999 9999999999999999999999987653 223345566666544 589999877664
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.74 E-value=3.1e-18 Score=188.88 Aligned_cols=176 Identities=24% Similarity=0.292 Sum_probs=135.3
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccC-------
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN------- 279 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~------- 279 (436)
++.+|++|+|.+++++.|.+.+..++.+++.|..+++..++++||+||||||||++|++||++++..+.....
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 4578999999999999999999999999999999999999999999999999999999999998722211100
Q ss_pred ------------------CCC----------------CCCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCcc
Q 013823 280 ------------------DGA----------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPA 325 (436)
Q Consensus 280 ------------------~~~----------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~A 325 (436)
..+ ..........+.|+..++++... ..+++|+|||+++.+|++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld~a 356 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSCTT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcCHH
Confidence 000 00011233456677788887654 458999999999999999
Q ss_pred ccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhc-CCCCHHHHHHHHh
Q 013823 326 LLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQS-TDVTPAEVAEELM 386 (436)
Q Consensus 326 llRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~-~~~tpaei~~~l~ 386 (436)
+.|+|||+..|.++.|+.++|..++..+..... .....++..++.. .+++++++...+.
T Consensus 357 l~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~--l~~~~~l~~la~~t~g~~g~dl~~l~~ 416 (806)
T 1ypw_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp TTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC--CCTTCCTHHHHHSCSSCCHHHHHHHHH
T ss_pred HhcccccccccccCCCCHHHHHHHHHHHHhcCC--CcccchhHHHHHhhcCcchHHHHHHHH
Confidence 999999999999999999999999998876542 1111223444443 3588988877653
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.73 E-value=3e-18 Score=167.57 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=88.2
Q ss_pred HhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcc-----------------------------cCCCC-----CC-
Q 013823 240 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDR-----------------------------QNDGA-----SV- 284 (436)
Q Consensus 240 ~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r-----------------------------~~~~~-----~~- 284 (436)
..+..+|+|+|||||||||||++|++||++++..+... ...++ +.
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34677889999999999999999999999998322111 00111 00
Q ss_pred ------CC------CcceeecceeecccCccc---------CCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCH
Q 013823 285 ------GS------NTKLTLSGILNFIDGLWS---------SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTV 343 (436)
Q Consensus 285 ------~~------~~~~~~s~LL~~ldg~~~---------~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~ 343 (436)
++ ..+...+.|++.||+... ....+++||+|||+++.||+|++||||||.+|++ |+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~ 187 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCH
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCH
Confidence 00 111344778888875431 1224589999999999999999999999999984 699
Q ss_pred HHHHHHHHHHhcccCCCCCcHHHHHhhhh
Q 013823 344 HGFKVLASNYLGIKGKSHSLFGEIEGLIQ 372 (436)
Q Consensus 344 ~~r~~i~~~~l~~~~~~~~~~~~i~~l~~ 372 (436)
++|..|++.++... ......++.+..
T Consensus 188 ~~r~~Il~~~~~~~---~~~~~~l~~~~~ 213 (293)
T 3t15_A 188 EDRIGVCTGIFRTD---NVPAEDVVKIVD 213 (293)
T ss_dssp HHHHHHHHHHHGGG---CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC---CCCHHHHHHHhC
Confidence 99999999988643 233555555554
No 30
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.69 E-value=1.1e-17 Score=171.78 Aligned_cols=134 Identities=13% Similarity=0.151 Sum_probs=51.5
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCC-CCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC----------
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG---------- 281 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~---------- 281 (436)
+|+|+++.|+.|...+..+..+...+...+. .+++++||+||||||||++|+++|+.++..+.......
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6899999999998888776655544444333 35689999999999999999999999995443221100
Q ss_pred C--------------------------CCCCCcceeecceeecccCcccCCCCeEEEEEe-cCCcCCCCccccCCCceeE
Q 013823 282 A--------------------------SVGSNTKLTLSGILNFIDGLWSSCGDERIIVFT-TNHKERIDPALLRPGRMDV 334 (436)
Q Consensus 282 ~--------------------------~~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~T-TN~~~~lD~AllRpGR~d~ 334 (436)
. ..+....++++.||+.|||+.+.. .+ +++ ||+++.||+||+||||||+
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~---~v-~a~~TN~~~~ld~aL~rggr~D~ 171 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEV---EN-HDSHSSTRQAFRKKLREGQLDDK 171 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccccc---cc-ccccccCHHHHHHHHHcCCCcce
Confidence 0 112245678899999999997542 22 454 9999999999999999999
Q ss_pred EEEcCCCCHH-HHHHHH
Q 013823 335 HINMSYCTVH-GFKVLA 350 (436)
Q Consensus 335 ~I~~~~p~~~-~r~~i~ 350 (436)
+|+++.|+.. .+..|+
T Consensus 172 ~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 172 EIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------
T ss_pred EEEEcCCCCccchhhhh
Confidence 9999999987 555554
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.58 E-value=8.4e-16 Score=159.17 Aligned_cols=130 Identities=19% Similarity=0.186 Sum_probs=86.2
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc--chhhcccCCCC-
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS--VEMKDRQNDGA- 282 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~r~~~~~- 282 (436)
.+...|++++|.+++|+.+...+... ..|..+++++|||||||||||++|+++|++++ ..+........
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 33456899999999999988766532 23666779999999999999999999999998 32221110000
Q ss_pred ----------------------------------------------CCCCCcceeecceee------------cccCcc-
Q 013823 283 ----------------------------------------------SVGSNTKLTLSGILN------------FIDGLW- 303 (436)
Q Consensus 283 ----------------------------------------------~~~~~~~~~~s~LL~------------~ldg~~- 303 (436)
..+......+.+|+. .+|++.
T Consensus 103 ~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 103 STEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp CSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 000111222333333 444332
Q ss_pred --cCCCCeEEEEEecCCcCCCCccccCCCceeE--EEEcCCCCH
Q 013823 304 --SSCGDERIIVFTTNHKERIDPALLRPGRMDV--HINMSYCTV 343 (436)
Q Consensus 304 --~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~--~I~~~~p~~ 343 (436)
...++.++|++|||+++.+|+++.||||||. .+.+|.|+.
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 1234456666899999999999999999999 566677754
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.54 E-value=2.5e-14 Score=141.57 Aligned_cols=174 Identities=11% Similarity=0.093 Sum_probs=111.4
Q ss_pred CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ 278 (436)
Q Consensus 199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~ 278 (436)
.|.. .-.|.+|++++|.+..++.+...+..... +.....++||+||||||||++|+++|+.++..+....
T Consensus 18 ~~~~--~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 18 TYET--SLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred hhhh--ccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 4553 45677999999999999999887764332 1234568999999999999999999999985443222
Q ss_pred CCCC----------------------CCCCCcceeecceeecccCccc--------------CCCCeEEEEEecCCcCCC
Q 013823 279 NDGA----------------------SVGSNTKLTLSGILNFIDGLWS--------------SCGDERIIVFTTNHKERI 322 (436)
Q Consensus 279 ~~~~----------------------~~~~~~~~~~s~LL~~ldg~~~--------------~~~~~~ivI~TTN~~~~l 322 (436)
.... +.+.........|+..++...- ..-..+++|++||+...+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l 167 (338)
T 3pfi_A 88 APMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGML 167 (338)
T ss_dssp GGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGS
T ss_pred chhccchhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcccc
Confidence 1111 0001111122223333332210 000137899999999999
Q ss_pred CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHH
Q 013823 323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL 385 (436)
Q Consensus 323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l 385 (436)
+++|++ ||+..|+|+.|+.+++..++..++...+ .....+.+..++....-.+.++.+.+
T Consensus 168 ~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 168 SNPLRD--RFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999 9999999999999999999998876542 12223344555554445555554433
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.51 E-value=1.8e-14 Score=140.58 Aligned_cols=140 Identities=19% Similarity=0.282 Sum_probs=97.7
Q ss_pred Cc-ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCc---ceeeEeCCCCCChhHHHHHHHHHhcc-------hhhcccC
Q 013823 211 FD-TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLSV-------EMKDRQN 279 (436)
Q Consensus 211 ~~-~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~---rg~LL~GPpGtGKT~la~aiA~~l~~-------~~~~r~~ 279 (436)
++ +|+|.+++|+.|.+.+..+. .+..+.+.|+..+ .++||+||||||||++|+++|+.++. .+.....
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 55 79999999999999887655 4666777776554 35999999999999999999999852 1111110
Q ss_pred CCC---CCC---------------------------------CCcceeecceeecccCcccCCCCeEEEEEecCCcC---
Q 013823 280 DGA---SVG---------------------------------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKE--- 320 (436)
Q Consensus 280 ~~~---~~~---------------------------------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~--- 320 (436)
... ..+ .......+.|++.++.. ..++++|+|||.++
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN----RDDLVVILAGYADRMEN 183 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHH
T ss_pred HHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHH
Confidence 000 000 00112223344444332 23478889998654
Q ss_pred --CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 321 --RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 321 --~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.++|+|++ ||+.+|+|+.|+.+++..|+.+++...
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 36899999 999999999999999999999998754
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.48 E-value=2.5e-13 Score=133.15 Aligned_cols=169 Identities=18% Similarity=0.170 Sum_probs=110.8
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA--- 282 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~--- 282 (436)
-.|.+|++++|.+..++.+.+.+...... ...+.++||+||||||||++|+++|+.++..+........
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 45678999999999999888776643211 1245789999999999999999999998844322211110
Q ss_pred --------------------CCCCCcceeecceeecccCcc-----cC---------CCCeEEEEEecCCcCCCCccccC
Q 013823 283 --------------------SVGSNTKLTLSGILNFIDGLW-----SS---------CGDERIIVFTTNHKERIDPALLR 328 (436)
Q Consensus 283 --------------------~~~~~~~~~~s~LL~~ldg~~-----~~---------~~~~~ivI~TTN~~~~lD~AllR 328 (436)
+.+.........|+..++... .. ....+++|+|||.+..+++++.+
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~ 157 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS 157 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT
T ss_pred HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh
Confidence 000011111122333332211 00 00236899999999999999999
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHH
Q 013823 329 PGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL 385 (436)
Q Consensus 329 pGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l 385 (436)
||+.++.++.|+.+++..++..++...+ .....+.+..++....-.|.++.+.+
T Consensus 158 --R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 158 --RFGIVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp --TCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHH
T ss_pred --cccEEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999999999999999886543 22334445555555555666666554
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.39 E-value=4.2e-13 Score=131.99 Aligned_cols=139 Identities=17% Similarity=0.115 Sum_probs=93.7
Q ss_pred CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhccc
Q 013823 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQ 278 (436)
Q Consensus 199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~ 278 (436)
.|.. ...|.+|++++|.++.++.+.+.+. ....+..+|++||||||||++|+++|++++.++....
T Consensus 15 ~~~~--k~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 15 ILEQ--KYRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SHHH--HSCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred hHHH--hhCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 4543 5678999999999999988877655 1234567899999999999999999999985444332
Q ss_pred CCCCCCC-------------CCcceeecceeecccCcc-c-----------CCCCeEEEEEecCCcCCCCccccCCCcee
Q 013823 279 NDGASVG-------------SNTKLTLSGILNFIDGLW-S-----------SCGDERIIVFTTNHKERIDPALLRPGRMD 333 (436)
Q Consensus 279 ~~~~~~~-------------~~~~~~~s~LL~~ldg~~-~-----------~~~~~~ivI~TTN~~~~lD~AllRpGR~d 333 (436)
....... .......--+++.+|.+. . .....+.+|+|||.+..+++++.+ |+.
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s--R~~ 158 (324)
T 3u61_B 81 GSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS--RCR 158 (324)
T ss_dssp TTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH--HSE
T ss_pred ccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh--hCc
Confidence 2211000 000000011233333332 0 001347889999999999999999 995
Q ss_pred EEEEcCCCCHHHHHHHHHHHh
Q 013823 334 VHINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 334 ~~I~~~~p~~~~r~~i~~~~l 354 (436)
.++|+.|+.+++..++..++
T Consensus 159 -~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 159 -VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp -EEECCCCCHHHHHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHH
Confidence 69999999999877766654
No 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.37 E-value=1.7e-12 Score=118.68 Aligned_cols=137 Identities=19% Similarity=0.141 Sum_probs=88.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----hhcccC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE-----MKDRQN 279 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~-----~~~r~~ 279 (436)
...|..|++++|.++.++.+.+.+.. ....++||+||||||||++++++++.+... +.....
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 45678999999999998888776541 122359999999999999999999986311 111111
Q ss_pred CCCCC---------------CCCcceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCccccCCCcee
Q 013823 280 DGASV---------------GSNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPALLRPGRMD 333 (436)
Q Consensus 280 ~~~~~---------------~~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~AllRpGR~d 333 (436)
..... ........--+++.++.+. ........+|+|||.++.+++++.+ |+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~--r~~ 154 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RCA 154 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH--hCc
Confidence 00000 0000000001122222110 1112347889999999999999999 997
Q ss_pred EEEEcCCCCHHHHHHHHHHHhccc
Q 013823 334 VHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 334 ~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
.++++.|+.++...++..++...
T Consensus 155 -~i~~~~~~~~~~~~~l~~~~~~~ 177 (226)
T 2chg_A 155 -VFRFKPVPKEAMKKRLLEICEKE 177 (226)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHHH
T ss_pred -eeecCCCCHHHHHHHHHHHHHHc
Confidence 89999999999999988877543
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.34 E-value=1.8e-12 Score=137.02 Aligned_cols=133 Identities=23% Similarity=0.189 Sum_probs=89.3
Q ss_pred CcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC-CcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-------
Q 013823 211 FDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA------- 282 (436)
Q Consensus 211 ~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~------- 282 (436)
.++++|.+++++.+.+.+.... +... .+..+||+||||||||++|++||+.++..+......+.
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~--------~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQK--------LTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHH--------HSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHH--------hcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 4568999999999877554221 1111 34579999999999999999999998733221111000
Q ss_pred -------------------------------CCCC----CcceeecceeecccCcccC-----------CCCeEEEEEec
Q 013823 283 -------------------------------SVGS----NTKLTLSGILNFIDGLWSS-----------CGDERIIVFTT 316 (436)
Q Consensus 283 -------------------------------~~~~----~~~~~~s~LL~~ldg~~~~-----------~~~~~ivI~TT 316 (436)
+.+. ......+.||..||..... .-.+++||+||
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~tt 231 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA 231 (543)
T ss_dssp ------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEEC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEecc
Confidence 0000 0011335566666543210 00357899999
Q ss_pred CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823 317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l 354 (436)
|.++.+||+|++ ||+ .|+|+.|+.+++..|+..++
T Consensus 232 N~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 232 NNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred CccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 999999999999 996 68999999999999999887
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.33 E-value=2.1e-12 Score=128.90 Aligned_cols=55 Identities=27% Similarity=0.340 Sum_probs=44.1
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+|++++|.+..++.+...+... ..|..+++++||+||||||||++|+++|+.++
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44999999999998875544322 12445568999999999999999999999987
No 39
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.32 E-value=9.4e-12 Score=120.74 Aligned_cols=139 Identities=14% Similarity=0.250 Sum_probs=87.5
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHh-CCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCCC----C--
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGASV----G-- 285 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~~----~-- 285 (436)
+|+|.++.++.|...+............. +...+.++||+||||||||++|+++|+.++..+.......... +
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 58999999999988776543221111000 1134578999999999999999999999984332211110000 0
Q ss_pred -------------------------------CCcce------------eecceeecccCccc------CCCCeEEEEEe-
Q 013823 286 -------------------------------SNTKL------------TLSGILNFIDGLWS------SCGDERIIVFT- 315 (436)
Q Consensus 286 -------------------------------~~~~~------------~~s~LL~~ldg~~~------~~~~~~ivI~T- 315 (436)
..... ..+.|+..+++... .....+++|+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 00000 01223333333210 00124677887
Q ss_pred ---cCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHH
Q 013823 316 ---TNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNY 353 (436)
Q Consensus 316 ---TN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~ 353 (436)
++.+..+++++++ ||+.+|+|+.|+.+++..|+++.
T Consensus 176 ~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 176 AFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp CCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred CcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhh
Confidence 5688899999998 99999999999999999999853
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.32 E-value=5.9e-12 Score=116.30 Aligned_cols=138 Identities=16% Similarity=0.224 Sum_probs=89.9
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMK--------- 275 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~--------- 275 (436)
...|..|++++|.++.++.|.+.+.. + ..++.++|+||||||||++++++++.++....
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 45678899999999999888776541 1 22357999999999999999999998753110
Q ss_pred ---------------cccCCCC-----------CCC--CCcceeecceeecccCcc-----------cCCCCeEEEEEec
Q 013823 276 ---------------DRQNDGA-----------SVG--SNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTT 316 (436)
Q Consensus 276 ---------------~r~~~~~-----------~~~--~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TT 316 (436)
....... ... .......--+++.+|.+. ......+.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEe
Confidence 0000000 000 000000001122222110 1112458899999
Q ss_pred CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|.+..+++++.+ |+ ..|+++.++.++...++..++...
T Consensus 164 ~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~ 201 (250)
T 1njg_A 164 TDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE 201 (250)
T ss_dssp SCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHT
T ss_pred CChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhc
Confidence 999999999998 76 789999999999999999887543
No 41
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.30 E-value=1e-11 Score=120.80 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=89.6
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc-----chhhcccC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS-----VEMKDRQN 279 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~r~~ 279 (436)
...|.+|++++|.++.++.+...+.. | ...++|||||||||||++|+++|+.+. ..+.....
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 56788999999999998887665431 1 112499999999999999999999862 11111111
Q ss_pred CCC-CCC-----------------C------------CcceeecceeecccCcccCCCCeEEEEEecCCcCCCCccccCC
Q 013823 280 DGA-SVG-----------------S------------NTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRP 329 (436)
Q Consensus 280 ~~~-~~~-----------------~------------~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRp 329 (436)
... ... . ......+.|+..++. ....+++|++||.+..+++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~----~~~~~~~i~~~~~~~~l~~~l~s- 151 (319)
T 2chq_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM----YSKSCRFILSCNYVSRIIEPIQS- 151 (319)
T ss_dssp TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS----SSSSEEEEEEESCGGGSCHHHHT-
T ss_pred ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh----cCCCCeEEEEeCChhhcchHHHh-
Confidence 000 000 0 000111223333332 23457889999999999999999
Q ss_pred CceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 330 GRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 330 GR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|+. .+.|+.|+.++...++...+...
T Consensus 152 -r~~-~i~~~~~~~~~~~~~l~~~~~~~ 177 (319)
T 2chq_A 152 -RCA-VFRFKPVPKEAMKKRLLEICEKE 177 (319)
T ss_dssp -TCE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred -hCe-EEEecCCCHHHHHHHHHHHHHHc
Confidence 886 89999999999999998877654
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.30 E-value=7.4e-12 Score=129.19 Aligned_cols=130 Identities=18% Similarity=0.278 Sum_probs=86.7
Q ss_pred cCCCCCCcccccChhHH---HHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCC
Q 013823 205 LEHPSTFDTLAMDPELK---QMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDG 281 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k---~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~ 281 (436)
.-.|.+|++++|++.++ +.+...+.. | ...++||+||||||||++|++||+.++..+.......
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 45689999999999988 555554431 1 1268999999999999999999999984443322211
Q ss_pred CC---------------------------CCCCcceeecceeecccCcccCCCCeEEEEEec--CCcCCCCccccCCCce
Q 013823 282 AS---------------------------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTT--NHKERIDPALLRPGRM 332 (436)
Q Consensus 282 ~~---------------------------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TT--N~~~~lD~AllRpGR~ 332 (436)
.. .+.........||..++. ..+++|++| |....+++++++ |+
T Consensus 86 ~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~------~~v~lI~att~n~~~~l~~aL~s--R~ 157 (447)
T 3pvs_A 86 SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED------GTITFIGATTENPSFELNSALLS--RA 157 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT------TSCEEEEEESSCGGGSSCHHHHT--TE
T ss_pred CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc------CceEEEecCCCCcccccCHHHhC--ce
Confidence 10 011111222334444433 125555554 555689999999 98
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 333 DVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 333 d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
. .+.|+.|+.+++..++.+++..
T Consensus 158 ~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 158 R-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp E-EEECCCCCHHHHHHHHHHHHHC
T ss_pred e-EEeeCCcCHHHHHHHHHHHHHH
Confidence 6 6779999999999999998865
No 43
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.28 E-value=4e-11 Score=124.44 Aligned_cols=135 Identities=20% Similarity=0.236 Sum_probs=87.9
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh----------cchhh
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------SVEMK 275 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~ 275 (436)
-.|..|+.|+|.++..+.+.+.+. ...+.++||+||||||||++|+++|..+ +..+.
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 456789999999998888776553 1335689999999999999999999997 22222
Q ss_pred cccCCCCCCCCCc---ceee------cceeecccCcccC--------CCCeEEEEEecCCcC-----CCCccccCCCcee
Q 013823 276 DRQNDGASVGSNT---KLTL------SGILNFIDGLWSS--------CGDERIIVFTTNHKE-----RIDPALLRPGRMD 333 (436)
Q Consensus 276 ~r~~~~~~~~~~~---~~~~------s~LL~~ldg~~~~--------~~~~~ivI~TTN~~~-----~lD~AllRpGR~d 333 (436)
.........+... +..+ ...+-++|+-... ....+.+|++||.++ .+|+++.| ||.
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~ 318 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQ 318 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEeCchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH--hCc
Confidence 2111100000000 0000 0111122211000 123478999999887 69999999 998
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcc
Q 013823 334 VHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 334 ~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
. |.|+.|+.+++..|++.++..
T Consensus 319 ~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 319 P-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp E-EECCCCCHHHHHHHHHHTTTT
T ss_pred c-ceeCCCCHHHHHHHHHHHHHH
Confidence 4 999999999999999988765
No 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.27 E-value=1.9e-11 Score=117.31 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=80.4
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC---------
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA--------- 282 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~--------- 282 (436)
+.+++.....+.+........ ......+...++++||+||||||||++|+++|+.++..+........
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 346666666566655422221 22333445677899999999999999999999998844332211100
Q ss_pred ----------------------C----------CCCCcceeecceeecccCcccCCCCeEEEEEecCCcCCCCc-cccCC
Q 013823 283 ----------------------S----------VGSNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERIDP-ALLRP 329 (436)
Q Consensus 283 ----------------------~----------~~~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~-AllRp 329 (436)
+ ........+..|+..+++... .+..++||+|||.++.+|+ .+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~- 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLN- 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTT-
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhc-
Confidence 0 000011122223333343321 2456889999999999998 5555
Q ss_pred CceeEEEEcCCCCH-HHHHHHHH
Q 013823 330 GRMDVHINMSYCTV-HGFKVLAS 351 (436)
Q Consensus 330 GR~d~~I~~~~p~~-~~r~~i~~ 351 (436)
||+..|++|.++. ++...++.
T Consensus 188 -rf~~~i~~p~l~~r~~i~~i~~ 209 (272)
T 1d2n_A 188 -AFSTTIHVPNIATGEQLLEALE 209 (272)
T ss_dssp -TSSEEEECCCEEEHHHHHHHHH
T ss_pred -ccceEEcCCCccHHHHHHHHHH
Confidence 9999999987765 44444443
No 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.27 E-value=4e-12 Score=125.43 Aligned_cols=131 Identities=12% Similarity=0.089 Sum_probs=85.2
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC------
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA------ 282 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~------ 282 (436)
..+++++|.+++++.+...+.. ++++||+||||||||++|+++|+.++..+........
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 3467889999888877665431 2689999999999999999999998844322211100
Q ss_pred ------CCCCCcceeec-------ceeecccCcc----------------------cCCCCeEEEEEecCCcC-----CC
Q 013823 283 ------SVGSNTKLTLS-------GILNFIDGLW----------------------SSCGDERIIVFTTNHKE-----RI 322 (436)
Q Consensus 283 ------~~~~~~~~~~s-------~LL~~ldg~~----------------------~~~~~~~ivI~TTN~~~-----~l 322 (436)
......-.... -++++++.+. ...+...++|+|+|..+ .+
T Consensus 89 ~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l 168 (331)
T 2r44_A 89 IGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPL 168 (331)
T ss_dssp HEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCC
T ss_pred CCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccC
Confidence 00000000000 0222222111 01123467788888543 38
Q ss_pred CccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 323 DPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 323 D~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
++++++ ||+.++++++|+.+++..|++.....
T Consensus 169 ~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 169 PEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 999999 99999999999999999999998764
No 46
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.24 E-value=3e-11 Score=120.41 Aligned_cols=138 Identities=16% Similarity=0.230 Sum_probs=90.4
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchh----------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEM---------- 274 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~---------- 274 (436)
...|.+|++++|.++.++.+...+.. | ..+..+||+||||||||++++++|+.++...
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 45678999999999999888776541 1 2345799999999999999999999886321
Q ss_pred --------------hcccCCC-CCCCC------------CcceeecceeecccCc-----------ccCCCCeEEEEEec
Q 013823 275 --------------KDRQNDG-ASVGS------------NTKLTLSGILNFIDGL-----------WSSCGDERIIVFTT 316 (436)
Q Consensus 275 --------------~~r~~~~-~~~~~------------~~~~~~s~LL~~ldg~-----------~~~~~~~~ivI~TT 316 (436)
....... ..... ......--++..+|.+ .......+++|++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 0000000 00000 0000000012222211 01123458889999
Q ss_pred CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|.+..+++++.+ |+ ..++|+.|+.++...++..++...
T Consensus 157 ~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~ 194 (373)
T 1jr3_A 157 TDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE 194 (373)
T ss_dssp SCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 999999999998 87 789999999999999998877543
No 47
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=7.3e-11 Score=123.92 Aligned_cols=154 Identities=16% Similarity=0.241 Sum_probs=92.4
Q ss_pred CCccccccCCCCCCcccccChhHHHHHHHHHHHHHhh-HHHHHHhCC---CCcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 198 GMWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRR-KEFYRRVGK---AWKRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 198 ~~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~-~~~~~~~g~---~~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
..|.. ...|.+|++|+|.++.++.|.+.+...... +..+...|. +.++++||+||||||||++|+++|++++..
T Consensus 27 ~lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 27 KLWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35653 567889999999999999998887754322 122333333 356899999999999999999999999844
Q ss_pred hhcccCCCCCC-----------------CC----------CcceeecceeecccCcccCC--------------CCeEEE
Q 013823 274 MKDRQNDGASV-----------------GS----------NTKLTLSGILNFIDGLWSSC--------------GDERII 312 (436)
Q Consensus 274 ~~~r~~~~~~~-----------------~~----------~~~~~~s~LL~~ldg~~~~~--------------~~~~iv 312 (436)
+.......... .. ......--+++++|.+.... +..+|+
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIl 184 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLIL 184 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEE
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEE
Confidence 43322211100 00 00000111344444442211 112333
Q ss_pred EEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 313 VFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 313 I~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|+++.....++ .+. |+...|.|+.|+.+++..++...+...
T Consensus 185 i~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~ 225 (516)
T 1sxj_A 185 ICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIRE 225 (516)
T ss_dssp EESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 33333334454 344 445689999999999988888776543
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=2.5e-11 Score=120.03 Aligned_cols=141 Identities=17% Similarity=0.165 Sum_probs=89.8
Q ss_pred CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----
Q 013823 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE----- 273 (436)
Q Consensus 199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----- 273 (436)
.|.. ...|.+|++++|.+++++.+...+. . | ...++||+||||||||++|+++|+.++..
T Consensus 26 ~~~~--k~~p~~~~~i~g~~~~~~~l~~~l~----~-------~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 26 PWVE--KYRPKNLDEVTAQDHAVTVLKKTLK----S-------A--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp CHHH--HTCCSSTTTCCSCCTTHHHHHHHTT----C-------T--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHH--hcCCCCHHHhhCCHHHHHHHHHHHh----c-------C--CCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 4553 4578899999999999988766543 1 1 12349999999999999999999987521
Q ss_pred -hhcccCCCC-CCC---C----C-----------------cceeecceeecccCccc-----------CCCCeEEEEEec
Q 013823 274 -MKDRQNDGA-SVG---S----N-----------------TKLTLSGILNFIDGLWS-----------SCGDERIIVFTT 316 (436)
Q Consensus 274 -~~~r~~~~~-~~~---~----~-----------------~~~~~s~LL~~ldg~~~-----------~~~~~~ivI~TT 316 (436)
+........ ... . . .....--+++++|.+.. .......+|++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 91 RILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred ceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEe
Confidence 111111110 000 0 0 00000012223332211 111235677889
Q ss_pred CCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 317 NHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 317 N~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|+++.+++++.+ |+. .+.|+.|+.++...++...+...
T Consensus 171 ~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~ 208 (353)
T 1sxj_D 171 NYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQE 208 (353)
T ss_dssp SCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred CchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999 986 88999999999888888876543
No 49
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=2.6e-11 Score=118.40 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=90.6
Q ss_pred CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----
Q 013823 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE----- 273 (436)
Q Consensus 199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----- 273 (436)
.|.. ...|.+|++++|.++.++.+...+.. | ...++||+||||||||++|+++|+.+...
T Consensus 14 ~~~~--k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 14 PWVE--KYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp CHHH--HTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred chhh--ccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 4543 56788999999999999988765541 1 12359999999999999999999986411
Q ss_pred hhcccCCCC------------------CC-C-----------CCcceeecceeecccCcccCCCCeEEEEEecCCcCCCC
Q 013823 274 MKDRQNDGA------------------SV-G-----------SNTKLTLSGILNFIDGLWSSCGDERIIVFTTNHKERID 323 (436)
Q Consensus 274 ~~~r~~~~~------------------~~-~-----------~~~~~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD 323 (436)
+........ .. + .......+.|+..++. ....+.+|+|||.++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~----~~~~~~~i~~~~~~~~l~ 154 (327)
T 1iqp_A 79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM----FSSNVRFILSCNYSSKII 154 (327)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH----TTTTEEEEEEESCGGGSC
T ss_pred eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh----cCCCCeEEEEeCCccccC
Confidence 111110000 00 0 0000111122222222 123478888999999999
Q ss_pred ccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 324 PALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 324 ~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
+++.+ |+. .+.|+.++.++...++...+...
T Consensus 155 ~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 155 EPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENE 185 (327)
T ss_dssp HHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhc
Confidence 99998 886 78999999999988888876543
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.21 E-value=5.9e-12 Score=112.34 Aligned_cols=128 Identities=17% Similarity=0.199 Sum_probs=80.2
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc----------hhhc
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV----------EMKD 276 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------~~~~ 276 (436)
.|..|++++|.++..+.+.+.+. ...++++||+||||||||++++++|+.+.. .+..
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 46789999999988887766543 134578999999999999999999998731 1110
Q ss_pred cc-----CCCCCCCC-------------CcceeecceeecccCcccC-----------------CCCeEEEEEecCCcC-
Q 013823 277 RQ-----NDGASVGS-------------NTKLTLSGILNFIDGLWSS-----------------CGDERIIVFTTNHKE- 320 (436)
Q Consensus 277 r~-----~~~~~~~~-------------~~~~~~s~LL~~ldg~~~~-----------------~~~~~ivI~TTN~~~- 320 (436)
.. ......+. ......--+++.+|.+... ...++.+|+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 163 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHH
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHH
Confidence 00 00000000 0000000122222222100 012467888998876
Q ss_pred ----CCCccccCCCceeEEEEcCCCCHHHHHHHH
Q 013823 321 ----RIDPALLRPGRMDVHINMSYCTVHGFKVLA 350 (436)
Q Consensus 321 ----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~ 350 (436)
.+|+++++ ||+ .|+++.|+.+++..|+
T Consensus 164 ~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 78999999 998 6999999999987664
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.20 E-value=3.7e-11 Score=118.80 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=37.3
Q ss_pred eEEEEEecCCcC-CCCccccCCCceeEEEEcCCC-CHHHHHHHHHHHhc
Q 013823 309 ERIIVFTTNHKE-RIDPALLRPGRMDVHINMSYC-TVHGFKVLASNYLG 355 (436)
Q Consensus 309 ~~ivI~TTN~~~-~lD~AllRpGR~d~~I~~~~p-~~~~r~~i~~~~l~ 355 (436)
.+++|+|||..+ .++++|++ ||+.+++++.| +.+.+..|+.+.+.
T Consensus 187 ~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~ 233 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDT 233 (350)
T ss_dssp CEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHh
Confidence 478899999755 89999999 99999999999 56777788877543
No 52
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.19 E-value=1.4e-11 Score=123.43 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=42.8
Q ss_pred cccChhHHHHHHHHHHHHHhhHHHHHH-hCC-CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 214 LAMDPELKQMILDDLDRFLRRKEFYRR-VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 214 i~g~~~~k~~i~~~l~~~l~~~~~~~~-~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+|++..++.|...+............ .+. ..++++||+||||||||++|++||+.++
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999998888644432211000 111 2467899999999999999999999987
No 53
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.19 E-value=1.6e-10 Score=107.36 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=77.8
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch---hhcccCCC
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE---MKDRQNDG 281 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~---~~~r~~~~ 281 (436)
+.++.+|+++++.+..+ .+.+.+..+... +.+++++|+||||||||++++++|+++... +.......
T Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAAGND-ELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC--CCH-HHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCCCCH-HHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 44557899998733212 222333322221 245789999999999999999999987621 00000000
Q ss_pred C--------------------CCCCCccee--ecceeecccCcccCCCCeEEEEEecC-CcC---CCCccccCCCcee--
Q 013823 282 A--------------------SVGSNTKLT--LSGILNFIDGLWSSCGDERIIVFTTN-HKE---RIDPALLRPGRMD-- 333 (436)
Q Consensus 282 ~--------------------~~~~~~~~~--~s~LL~~ldg~~~~~~~~~ivI~TTN-~~~---~lD~AllRpGR~d-- 333 (436)
. +.+...... ...|+..++..... ....+|+||| .+. .+++++.+ ||+
T Consensus 91 ~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~ 166 (242)
T 3bos_A 91 HASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWG 166 (242)
T ss_dssp GGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHS
T ss_pred HHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcC
Confidence 0 000000000 11223333322211 1122445544 444 45688888 886
Q ss_pred EEEEcCCCCHHHHHHHHHHHhccc
Q 013823 334 VHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 334 ~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
..++++.|+.+++..++..++...
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~~~~~ 190 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRRAAMR 190 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHT
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHc
Confidence 899999999999999999887643
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.19 E-value=1.8e-10 Score=126.36 Aligned_cols=135 Identities=20% Similarity=0.229 Sum_probs=88.3
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh----------cchhh
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------SVEMK 275 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~ 275 (436)
-.|..|+.|+|.++.++.+.+.+. ...+.++||+||||||||++|+++|+.+ +..+.
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~-------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHh-------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 456789999999999998876543 1345689999999999999999999997 32222
Q ss_pred cccCCCCCCCCCc---ceee------cceeecccCccc--------CCCCeEEEEEecCCcC-----CCCccccCCCcee
Q 013823 276 DRQNDGASVGSNT---KLTL------SGILNFIDGLWS--------SCGDERIIVFTTNHKE-----RIDPALLRPGRMD 333 (436)
Q Consensus 276 ~r~~~~~~~~~~~---~~~~------s~LL~~ldg~~~--------~~~~~~ivI~TTN~~~-----~lD~AllRpGR~d 333 (436)
..+......+... +..+ ...+-++|+-.. -...++.+|+|||..+ .+|+++.| ||.
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~ 318 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER--RFQ 318 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEcCchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHh--hCc
Confidence 1111000000000 0000 001112221100 0023578999999888 79999999 995
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcc
Q 013823 334 VHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 334 ~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
.|.|+.|+.+++..|++.+...
T Consensus 319 -~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 319 -PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp -EEECCCCCHHHHHHHHHHTTTT
T ss_pred -EEEeCCCCHHHHHHHHHHHHHH
Confidence 5999999999999999987765
No 55
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=7.9e-11 Score=114.70 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=89.7
Q ss_pred CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc-----h
Q 013823 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV-----E 273 (436)
Q Consensus 199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-----~ 273 (436)
.|.. ...|.+|++++|.++.++.+.+.+.. | ..+. +|||||||||||++|+++|+.+.. .
T Consensus 10 ~~~~--~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 74 (323)
T 1sxj_B 10 PWVE--KYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADG 74 (323)
T ss_dssp CHHH--HTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred cHHH--hcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCC
Confidence 4543 46788999999999999988776531 2 2233 999999999999999999998631 1
Q ss_pred hhcccCCCC-C--------------CCCC-cceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCccc
Q 013823 274 MKDRQNDGA-S--------------VGSN-TKLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPAL 326 (436)
Q Consensus 274 ~~~r~~~~~-~--------------~~~~-~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~Al 326 (436)
+........ . .... .....--+++.+|.+. ........+|++||.+..+++++
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 75 VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred EEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence 111111110 0 0000 0000001222222210 11123477888999999999999
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 327 LRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 327 lRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
.+ |+. .++|+.|+.++...++...+..
T Consensus 155 ~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 155 QS--QCA-ILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp HT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred Hh--hce-EEeecCCCHHHHHHHHHHHHHH
Confidence 98 875 8999999999999998887654
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.15 E-value=1.9e-10 Score=114.00 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=102.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC--
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA-- 282 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~-- 282 (436)
.-.|.+|++++|.+.+++.+...+..-. ..| ..+..++|+||||||||+|+++||++++..+........
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 3567799999999888777655543211 112 234679999999999999999999999643221111000
Q ss_pred --------------------CCCCCcceeecceeecccCcc------cCC--------CCeEEEEEecCCcCCCCccccC
Q 013823 283 --------------------SVGSNTKLTLSGILNFIDGLW------SSC--------GDERIIVFTTNHKERIDPALLR 328 (436)
Q Consensus 283 --------------------~~~~~~~~~~s~LL~~ldg~~------~~~--------~~~~ivI~TTN~~~~lD~AllR 328 (436)
+.+.........|+..++... ... -..+.++.+||++..|++++++
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s 169 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS 169 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH
Confidence 000000000111111111110 000 0125667799999999999999
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHHHHHH
Q 013823 329 PGRMDVHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEVAEEL 385 (436)
Q Consensus 329 pGR~d~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei~~~l 385 (436)
||...+.+++++.+++..++++.....+ .....+.+..++....-+|..+...|
T Consensus 170 --R~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 170 --RFGIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp --TCSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred --hcCceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 9999999999999999999988765432 12233445555555555665554443
No 57
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.15 E-value=4.5e-11 Score=116.33 Aligned_cols=139 Identities=18% Similarity=0.233 Sum_probs=85.7
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc---hhhcccCCCC------
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV---EMKDRQNDGA------ 282 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~---~~~~r~~~~~------ 282 (436)
++++|.+..++.|...+......- .. ...+...+||+||||||||++|+++|+.+.. .+........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 357889999998888776432110 00 0112246999999999999999999998741 1110000000
Q ss_pred ---------CCC-------------------------CCcceeecceeecccCcccCCC-------CeEEEEEecCC---
Q 013823 283 ---------SVG-------------------------SNTKLTLSGILNFIDGLWSSCG-------DERIIVFTTNH--- 318 (436)
Q Consensus 283 ---------~~~-------------------------~~~~~~~s~LL~~ldg~~~~~~-------~~~ivI~TTN~--- 318 (436)
..+ .......+.|+..|+.-....+ .++++|+|||.
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~ 172 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSP 172 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHH
Confidence 000 0001111222233322110000 24779999998
Q ss_pred -----------------------cCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 319 -----------------------KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 319 -----------------------~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
...++|+|+. ||+..+.|++|+.+++..|+.+++..
T Consensus 173 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 173 LILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp HHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred HHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 5578899998 99999999999999999999998854
No 58
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.11 E-value=5e-11 Score=106.16 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=42.3
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..|.+|++++|.++..+.+.+.+. ...++++||+||||||||++|+++|+.+
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HhccccchhhcchHHHHHHHHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999988777766442 1335789999999999999999999987
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.09 E-value=9.5e-11 Score=128.54 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=86.5
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC---Ccc-eeeEeCCCCCChhHHHHHHHHHhc---chhhcccCCCC--
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA---WKR-GYLLYGPPGTGKSSLIAAMANYLS---VEMKDRQNDGA-- 282 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~---~~r-g~LL~GPpGtGKT~la~aiA~~l~---~~~~~r~~~~~-- 282 (436)
+.|+|.++.++.|.+.+.... .|.. .|. ++||+||||||||++|+++|+.+. ..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 468899999988888776432 2222 222 599999999999999999999973 11111100000
Q ss_pred ------------------------CCCCCcceeecceeecccCcccC-------CCCeEEEEEecCCcCC----------
Q 013823 283 ------------------------SVGSNTKLTLSGILNFIDGLWSS-------CGDERIIVFTTNHKER---------- 321 (436)
Q Consensus 283 ------------------------~~~~~~~~~~s~LL~~ldg~~~~-------~~~~~ivI~TTN~~~~---------- 321 (436)
+.+.......+.|++.||.-.-. ...+++||+|||.+..
T Consensus 563 ~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~ 642 (758)
T 3pxi_A 563 KHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELK 642 (758)
T ss_dssp SCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHH
T ss_pred ccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHH
Confidence 00111222334455555531100 1124689999997554
Q ss_pred --CCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 322 --IDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 322 --lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
++|+|+. |||..|.|+.|+.+++..|+..++..
T Consensus 643 ~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 643 RAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp HHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred hhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 7788888 99999999999999999999998754
No 60
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.08 E-value=1.8e-10 Score=113.23 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=89.2
Q ss_pred cCCCCCCcccc-cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh---cchhhcccCC
Q 013823 205 LEHPSTFDTLA-MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---SVEMKDRQND 280 (436)
Q Consensus 205 ~~~~~~~~~i~-g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~r~~~ 280 (436)
+.+..+|++++ |.... ..+ ..+......+ ...+.+++||||||||||++++++++++ +..+......
T Consensus 4 l~~~~~f~~fv~g~~~~-~a~-~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNR-LAY-EVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTTH-HHH-HHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcHH-HHH-HHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 44556899987 44332 211 2233222221 1234689999999999999999999988 4111100000
Q ss_pred ------------------------CC-----CCCCCcc--eeecceeecccCcccCCCCeEEEEEecCCcC---CCCccc
Q 013823 281 ------------------------GA-----SVGSNTK--LTLSGILNFIDGLWSSCGDERIIVFTTNHKE---RIDPAL 326 (436)
Q Consensus 281 ------------------------~~-----~~~~~~~--~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~---~lD~Al 326 (436)
.. +.+.... .....++..++..... +..+|+.++|.+. .+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~--~~~iii~~~~~~~~l~~l~~~L 152 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL--EKQIILASDRHPQKLDGVSDRL 152 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT--TCEEEEEESSCGGGCTTSCHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHC--CCeEEEEecCChHHHHHhhhHh
Confidence 00 0000000 1112223333322221 2356667777776 688999
Q ss_pred cCCCcee--EEEEcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcCCCCHHHH
Q 013823 327 LRPGRMD--VHINMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQSTDVTPAEV 381 (436)
Q Consensus 327 lRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~~~tpaei 381 (436)
.+ ||+ ..++++. +.+++..++..++...+ .....+.+..++... -...++
T Consensus 153 ~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~-~~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 153 VS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFN-LELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHC-SSHHHH
T ss_pred hh--cccCceEEEeCC-CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhC-CCHHHH
Confidence 98 996 7899999 99999999999886542 222233344444433 344443
No 61
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=4.7e-10 Score=111.16 Aligned_cols=139 Identities=22% Similarity=0.269 Sum_probs=86.3
Q ss_pred CccccccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcch-----
Q 013823 199 MWGSINLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVE----- 273 (436)
Q Consensus 199 ~w~~~~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~----- 273 (436)
.|.. ...|.+|++++|++++++.|...+. -| ..+ .+|||||||||||++++++|+.+...
T Consensus 14 ~~~~--k~rp~~~~~~~g~~~~~~~L~~~i~-----------~g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 14 PWVE--KYRPETLDEVYGQNEVITTVRKFVD-----------EG-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CHHH--HTCCSSGGGCCSCHHHHHHHHHHHH-----------TT-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred chHH--HhCCCcHHHhcCcHHHHHHHHHHHh-----------cC-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 4644 5678999999999988887766554 12 122 39999999999999999999987411
Q ss_pred hhcccCCCC-CC-------------C-CCcceeecceeecccCcc-----------cCCCCeEEEEEecCCcCCCCcccc
Q 013823 274 MKDRQNDGA-SV-------------G-SNTKLTLSGILNFIDGLW-----------SSCGDERIIVFTTNHKERIDPALL 327 (436)
Q Consensus 274 ~~~r~~~~~-~~-------------~-~~~~~~~s~LL~~ldg~~-----------~~~~~~~ivI~TTN~~~~lD~All 327 (436)
+........ .. . .......--++..+|.+. ........+|++||.+..+.+++.
T Consensus 79 ~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 79 VLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred EEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 111111000 00 0 000000000122222211 011233677888999999999999
Q ss_pred CCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 328 RPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 328 RpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
+ |+. .+.|+.++.++....+...+.
T Consensus 159 s--R~~-~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 159 S--QCT-RFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp T--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred h--hce-eEeccCCCHHHHHHHHHHHHH
Confidence 9 885 789999998888777777663
No 62
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.05 E-value=4.7e-10 Score=112.71 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=43.7
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHH------------------HHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEF------------------YRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~------------------~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.|+|+++.|+.|...+......... +.. ....+.++||+||||||||++|+++|+.++.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999998877544332221 111 1234568999999999999999999999983
No 63
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=3e-10 Score=112.64 Aligned_cols=138 Identities=15% Similarity=0.185 Sum_probs=86.5
Q ss_pred cCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhcc-hh---------
Q 013823 205 LEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLSV-EM--------- 274 (436)
Q Consensus 205 ~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~-~~--------- 274 (436)
..+|.+|++++|.+++++.+...+. . .| ..+. +||+||||||||++++++|+++.. ..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD---Q-------PR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT---C-------TT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh---h-------CC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 4678999999999998887765431 1 11 2233 999999999999999999996521 00
Q ss_pred -------------------hcccCCCCCCCC--Ccce---------ee------c--------ceeecccCccc------
Q 013823 275 -------------------KDRQNDGASVGS--NTKL---------TL------S--------GILNFIDGLWS------ 304 (436)
Q Consensus 275 -------------------~~r~~~~~~~~~--~~~~---------~~------s--------~LL~~ldg~~~------ 304 (436)
............ .... .+ + -++++.+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L 154 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAAL 154 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHH
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHH
Confidence 000000000000 0000 00 0 02222222110
Q ss_pred -----CCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 305 -----SCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 305 -----~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
....+..+|++||.++.+.+++.+ |+ ..+.|+.|+.++...++...+...
T Consensus 155 ~~~le~~~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~ 209 (354)
T 1sxj_E 155 RRTMEKYSKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNE 209 (354)
T ss_dssp HHHHHHSTTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHc
Confidence 012347888999999999999998 88 789999999999999998877544
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.02 E-value=2.8e-10 Score=124.66 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=86.4
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-----
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA----- 282 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~----- 282 (436)
+.|+|.++.++.|...+.. .+.|.. +..++||+||||||||++|+++|+.++..+........
T Consensus 458 ~~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 3477888888877765542 233432 22369999999999999999999999833321111000
Q ss_pred ----------C-------------------------CCCCcceeecceeecccCcc-c-CCC-----CeEEEEEecCCcC
Q 013823 283 ----------S-------------------------VGSNTKLTLSGILNFIDGLW-S-SCG-----DERIIVFTTNHKE 320 (436)
Q Consensus 283 ----------~-------------------------~~~~~~~~~s~LL~~ldg~~-~-~~~-----~~~ivI~TTN~~~ 320 (436)
. .+.......+.|++.||.-. . ..+ .+++||+|||...
T Consensus 530 ~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~ 609 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_dssp CSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSC
T ss_pred HhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcch
Confidence 0 00011112223333333211 0 000 2478999999754
Q ss_pred -------------------------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 321 -------------------------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 321 -------------------------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
.++|+|+. |||.+|.|+.|+.+++..|+..++..
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp C-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHH
Confidence 67888888 99999999999999999999998853
No 65
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.95 E-value=1.2e-09 Score=108.84 Aligned_cols=137 Identities=19% Similarity=0.093 Sum_probs=85.7
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh---------cchhhcccC
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------SVEMKDRQN 279 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~r~~ 279 (436)
...++++|.++..+.+...+...+. ...+++++|+||||||||++++++++.+ +..+.....
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3458899999998888776542211 1345789999999999999999999988 422211110
Q ss_pred CCC-------------------CCCC--------------CcceeecceeecccCccc-----------------CC-CC
Q 013823 280 DGA-------------------SVGS--------------NTKLTLSGILNFIDGLWS-----------------SC-GD 308 (436)
Q Consensus 280 ~~~-------------------~~~~--------------~~~~~~s~LL~~ldg~~~-----------------~~-~~ 308 (436)
... ..+. ......--++++++.+.. .. +.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~ 166 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRV 166 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC----
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCc
Confidence 000 0000 000000011222221110 00 23
Q ss_pred eEEEEEecCCc---CCCCccccCCCceeE-EEEcCCCCHHHHHHHHHHHhcc
Q 013823 309 ERIIVFTTNHK---ERIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 309 ~~ivI~TTN~~---~~lD~AllRpGR~d~-~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
.+.+|+|||.+ +.+++++.+ ||.. .|+|+.++.++...++...+..
T Consensus 167 ~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 167 WVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp -CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 57899999988 788999998 8875 8999999999999999988753
No 66
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.94 E-value=1.1e-09 Score=112.58 Aligned_cols=139 Identities=16% Similarity=0.233 Sum_probs=79.4
Q ss_pred cCCCCCCcccc-cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh-----cchhhccc
Q 013823 205 LEHPSTFDTLA-MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----SVEMKDRQ 278 (436)
Q Consensus 205 ~~~~~~~~~i~-g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~r~ 278 (436)
+.+..+|++++ |..... ....+......+ + . +.+++||||||||||+|+++||+++ +..+....
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 44445899987 544332 122222222221 1 1 5789999999999999999999988 31110000
Q ss_pred ------------------------C-CCC-----CCCCCcc--eeecceeecccCcccCCCCeEEEEEecCCcCC---CC
Q 013823 279 ------------------------N-DGA-----SVGSNTK--LTLSGILNFIDGLWSSCGDERIIVFTTNHKER---ID 323 (436)
Q Consensus 279 ------------------------~-~~~-----~~~~~~~--~~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~---lD 323 (436)
. ... +.+.... .....|+..++.+... +..+||.|.+.+.. ++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~--~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT--TCEEEEEESSCGGGCSSCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHC--CCeEEEEECCCHHHHHHHH
Confidence 0 000 0000000 1112233333332221 22455555555554 88
Q ss_pred ccccCCCcee--EEEEcCCCCHHHHHHHHHHHhccc
Q 013823 324 PALLRPGRMD--VHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 324 ~AllRpGR~d--~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
+++++ ||+ ..+.++.|+.+++..++...+...
T Consensus 246 ~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~ 279 (440)
T 2z4s_A 246 DRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIE 279 (440)
T ss_dssp HHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 99999 996 789999999999999999887543
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.93 E-value=1.9e-09 Score=118.18 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=84.7
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc----------chhh
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS----------VEMK 275 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----------~~~~ 275 (436)
-.|..|++++|.++..+.+.+.+. ...+.++||+||||||||++|+++|+.+. ..+.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 346789999999988887766443 23457899999999999999999999873 1111
Q ss_pred cccCCC-----CCCCCCc------------ceeecceeecccCcccC------------------CCCeEEEEEecCCcC
Q 013823 276 DRQNDG-----ASVGSNT------------KLTLSGILNFIDGLWSS------------------CGDERIIVFTTNHKE 320 (436)
Q Consensus 276 ~r~~~~-----~~~~~~~------------~~~~s~LL~~ldg~~~~------------------~~~~~ivI~TTN~~~ 320 (436)
...... ...+... ....--+++.++.+... ...++.+|++||.++
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHH
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchH
Confidence 110000 0000000 00000122222222000 013467888888653
Q ss_pred -----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 321 -----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 321 -----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
.+|++|.| ||+ .|.|+.|+.+++..++..+..
T Consensus 327 ~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 327 FSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp HHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 57899999 998 699999999999999987654
No 68
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.92 E-value=2.8e-10 Score=121.37 Aligned_cols=107 Identities=18% Similarity=0.235 Sum_probs=69.1
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhhcccC----CCC-------------------------------CCCCCcceee
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMKDRQN----DGA-------------------------------SVGSNTKLTL 292 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~----~~~-------------------------------~~~~~~~~~~ 292 (436)
++||+||||||||++|+++|+.++........ .+. +.+.......
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q 408 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR 408 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHH
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHh
Confidence 69999999999999999999988622111000 000 0001111122
Q ss_pred cceeecccCc---------ccCCCCeEEEEEecCCcC-------------CCCccccCCCcee-EEEEcCCCCHHHHHHH
Q 013823 293 SGILNFIDGL---------WSSCGDERIIVFTTNHKE-------------RIDPALLRPGRMD-VHINMSYCTVHGFKVL 349 (436)
Q Consensus 293 s~LL~~ldg~---------~~~~~~~~ivI~TTN~~~-------------~lD~AllRpGR~d-~~I~~~~p~~~~r~~i 349 (436)
+.|+..|+.- .......+.||+|||.+. .|++|+++ ||| ..+..++|+.+ ...|
T Consensus 409 ~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i 485 (595)
T 3f9v_A 409 VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DREL 485 (595)
T ss_dssp HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHH
T ss_pred hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHH
Confidence 3344444321 111123467999999887 89999999 998 56677888888 8888
Q ss_pred HHHHhccc
Q 013823 350 ASNYLGIK 357 (436)
Q Consensus 350 ~~~~l~~~ 357 (436)
+++.+...
T Consensus 486 ~~~il~~~ 493 (595)
T 3f9v_A 486 ANYILDVH 493 (595)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHh
Confidence 88888754
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.91 E-value=4.2e-09 Score=116.97 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=83.7
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh----------cchhhc
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------SVEMKD 276 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 276 (436)
.|..|++++|.++..+.+.+.+. ...++++||+||||||||++|+++|+.+ +..+..
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 46789999999988877766442 1345689999999999999999999987 322221
Q ss_pred ccCCCCC-----CCCC-------------cceeecceeecccCcccC-----------------CCCeEEEEEecCCcC-
Q 013823 277 RQNDGAS-----VGSN-------------TKLTLSGILNFIDGLWSS-----------------CGDERIIVFTTNHKE- 320 (436)
Q Consensus 277 r~~~~~~-----~~~~-------------~~~~~s~LL~~ldg~~~~-----------------~~~~~ivI~TTN~~~- 320 (436)
....... .+.. .....--+++.++.+... ...++.+|++||.++
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEY 311 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHH
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHH
Confidence 1111000 0000 000000112222222100 012467888888775
Q ss_pred ---CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 321 ---RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 321 ---~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
.+|++|.| ||+. |.++.|+.+++..|++.++.
T Consensus 312 ~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 312 REIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp HHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred hhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 48999999 9986 99999999999999987664
No 70
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.89 E-value=7.7e-09 Score=101.77 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=95.6
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcc----------hhhcccCCC-----------------C--CCCC--------
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSV----------EMKDRQNDG-----------------A--SVGS-------- 286 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~----------~~~~r~~~~-----------------~--~~~~-------- 286 (436)
..+.+++||||||||||++++++++++.. ......... . ..+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 45678999999999999999999999841 111111000 0 0000
Q ss_pred ------CcceeecceeecccCcc------------cCCCCeEEEEEecCCcCC----CCccccCCCcee-EEEEcCCCCH
Q 013823 287 ------NTKLTLSGILNFIDGLW------------SSCGDERIIVFTTNHKER----IDPALLRPGRMD-VHINMSYCTV 343 (436)
Q Consensus 287 ------~~~~~~s~LL~~ldg~~------------~~~~~~~ivI~TTN~~~~----lD~AllRpGR~d-~~I~~~~p~~ 343 (436)
......--++.++|.+. ......++||+++|..+. |++++.+ ||+ ..|.|+.++.
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~ 200 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDK 200 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCH
T ss_pred HHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCH
Confidence 01111222455555542 011235789999998865 4556666 886 6899999999
Q ss_pred HHHHHHHHHHhcccCCC-------CC-----------cHHHHH-hhhh-cCCCCHHHHHHHHh----ccCCHHHHHHHHH
Q 013823 344 HGFKVLASNYLGIKGKS-------HS-----------LFGEIE-GLIQ-STDVTPAEVAEELM----KADDADVALEGLV 399 (436)
Q Consensus 344 ~~r~~i~~~~l~~~~~~-------~~-----------~~~~i~-~l~~-~~~~tpaei~~~l~----~~~~~~~al~~l~ 399 (436)
++...|+++-+...... +. ..+... .+.. ...++++-|.-+.. .++|+..|++-+.
T Consensus 201 ~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr 280 (318)
T 3te6_A 201 NELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICE 280 (318)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHH
Confidence 99999998877543100 00 000000 0000 01256665543333 3689999999988
Q ss_pred HHHHHHHHHh
Q 013823 400 NFLKRKRIQA 409 (436)
Q Consensus 400 ~~l~~~~~~~ 409 (436)
.+++....+.
T Consensus 281 ~A~~~ae~e~ 290 (318)
T 3te6_A 281 AAVEISKKDF 290 (318)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777665543
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.89 E-value=2e-09 Score=107.52 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=87.3
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh-----------cchhhcccC-
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----------SVEMKDRQN- 279 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----------~~~~~~r~~- 279 (436)
++++|.++..+.+.+.+...+.. ..+++++|+||||||||++++++++.+ +..+.....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999998877654431 335689999999999999999999987 421111100
Q ss_pred -------------------CCC-CCCCC-------------cceeecceeecccCcccC------------CCCeEEEEE
Q 013823 280 -------------------DGA-SVGSN-------------TKLTLSGILNFIDGLWSS------------CGDERIIVF 314 (436)
Q Consensus 280 -------------------~~~-~~~~~-------------~~~~~s~LL~~ldg~~~~------------~~~~~ivI~ 314 (436)
... ..+.. .... --+++.+|.+... ...++.+|+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~ 169 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIM 169 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCCcceEEEE
Confidence 000 00000 0000 0122222222110 003578999
Q ss_pred ecCCc---CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 315 TTNHK---ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 315 TTN~~---~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
|||.+ +.+++++.+ ||...|+|+.++.++...++...+.
T Consensus 170 ~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp ECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 99987 688999998 9878999999999999999998875
No 72
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.88 E-value=7.5e-09 Score=102.49 Aligned_cols=44 Identities=16% Similarity=0.020 Sum_probs=38.0
Q ss_pred CeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823 308 DERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 308 ~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l 354 (436)
...++|++||.++.++|++++ |+ ..++|+.|+.++...++....
T Consensus 137 ~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 137 AETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC
T ss_pred CCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc
Confidence 458889999999999999999 88 479999999999888877765
No 73
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.85 E-value=5.5e-09 Score=104.25 Aligned_cols=138 Identities=17% Similarity=0.062 Sum_probs=86.0
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh----cchhhcccCCCCC--
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----SVEMKDRQNDGAS-- 283 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~r~~~~~~-- 283 (436)
.+++++|.++..+.|.+.+...+.. +.+..+.++|+||||||||++++++++.+ +..+.........
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~-------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN-------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS-------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC-------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 3478999999999998877654432 11112379999999999999999999988 3211111100000
Q ss_pred -----------------CCCCc--------------ceeecceeecccCc-----------ccC-CC---CeEEEEEecC
Q 013823 284 -----------------VGSNT--------------KLTLSGILNFIDGL-----------WSS-CG---DERIIVFTTN 317 (436)
Q Consensus 284 -----------------~~~~~--------------~~~~s~LL~~ldg~-----------~~~-~~---~~~ivI~TTN 317 (436)
.+... ....--++++++.+ ... .. .++.+|++||
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 00000 00000122222221 000 01 2578889999
Q ss_pred Cc---CCCCccccCCCceeE-EEEcCCCCHHHHHHHHHHHhcc
Q 013823 318 HK---ERIDPALLRPGRMDV-HINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 318 ~~---~~lD~AllRpGR~d~-~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
.+ +.+++.+.+ ||.. .|+|+.++.++...++...+..
T Consensus 168 ~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 168 NDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp STHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred CchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 88 678888888 8875 8999999999999998887753
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.85 E-value=3.8e-09 Score=110.23 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=33.6
Q ss_pred EEEEEecCCcCC---CCccccCCCceeEEEEcCCCCH-HHHHHHHHHHhc
Q 013823 310 RIIVFTTNHKER---IDPALLRPGRMDVHINMSYCTV-HGFKVLASNYLG 355 (436)
Q Consensus 310 ~ivI~TTN~~~~---lD~AllRpGR~d~~I~~~~p~~-~~r~~i~~~~l~ 355 (436)
.++|+|||.+.. +.+|+++ ||..+|++|+|+. +++..|+.....
T Consensus 150 ~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 150 RLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp CEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 367888886322 3459999 9999999999998 678888877653
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.79 E-value=3e-09 Score=101.37 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+|++++|.....+.+.+.+.... ..+.++||+||||||||++|+++++.+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 478999999998888877666432 2347899999999999999999999875
No 76
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.75 E-value=4.7e-09 Score=104.25 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=83.3
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh------cchhhcccC--
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------SVEMKDRQN-- 279 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l------~~~~~~r~~-- 279 (436)
...+++++|.++..+.+.+.+...+. ...++.++|+||||||||++++++++.+ +........
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34558899999988888775542221 1345689999999999999999999987 411110000
Q ss_pred -------------------CCCCCC-------------CC------------------cceeecceeecccCcccCCCCe
Q 013823 280 -------------------DGASVG-------------SN------------------TKLTLSGILNFIDGLWSSCGDE 309 (436)
Q Consensus 280 -------------------~~~~~~-------------~~------------------~~~~~s~LL~~ldg~~~~~~~~ 309 (436)
...... .. ....+..|+..++.. .+.+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~---~~~~ 163 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV---NKSK 163 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC---CC--
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc---CCCe
Confidence 000000 00 000111111112111 1335
Q ss_pred EEEEEecCCc---CCCCccccCCCcee-EEEEcCCCCHHHHHHHHHHHhc
Q 013823 310 RIIVFTTNHK---ERIDPALLRPGRMD-VHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 310 ~ivI~TTN~~---~~lD~AllRpGR~d-~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
+.+|++||.+ +.+++++.+ ||. ..|+++.++.++...++...+.
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 7888999977 468888888 775 5899999999999999988765
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.74 E-value=8.4e-09 Score=114.54 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=84.9
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCC----CcceeeEeCCCCCChhHHHHHHHHHh---cchhhcccCCCCC-
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---SVEMKDRQNDGAS- 283 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~----~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~r~~~~~~- 283 (436)
+.|+|.++.++.|...+.... .|.. +..++||+||||||||++|++||+.+ +..+.........
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred cccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 567888888888877765322 2221 12479999999999999999999988 3222211111000
Q ss_pred ---------------------------------------CCCCcceeecceeecccCcccC--C-----CCeEEEEEecC
Q 013823 284 ---------------------------------------VGSNTKLTLSGILNFIDGLWSS--C-----GDERIIVFTTN 317 (436)
Q Consensus 284 ---------------------------------------~~~~~~~~~s~LL~~ldg~~~~--~-----~~~~ivI~TTN 317 (436)
.+.......+.|+..||.-.-. . -.+.+||+|||
T Consensus 630 ~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 630 KHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp SGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred hhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 0001111223344444422100 0 02478999999
Q ss_pred C--------------------------cCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 318 H--------------------------KERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 318 ~--------------------------~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
. ...+.|+|+. |||..+.|++|+.+++..|+..++..
T Consensus 710 ~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 710 LGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred cChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 7 2345677776 99999999999999999999998853
No 78
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.68 E-value=1.2e-08 Score=102.81 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=61.2
Q ss_pred hCCCCcceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCCC------------------CC--CC-c------c--ee
Q 013823 241 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGAS------------------VG--SN-T------K--LT 291 (436)
Q Consensus 241 ~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~~------------------~~--~~-~------~--~~ 291 (436)
++++.++.++|+|||||||||+++++|+.++............ .. .. . . ..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~~~~~~~ 243 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN 243 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHhhccccCcchH
Confidence 4778888999999999999999999999876322211100000 00 00 0 0 01
Q ss_pred ecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCC
Q 013823 292 LSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSY 340 (436)
Q Consensus 292 ~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~ 340 (436)
.+.+.+.+||. +.|+++|||++.+ ++++||||++..+...+
T Consensus 244 ~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 244 LDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp HHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 12344444442 4578899999999 79999999999888766
No 79
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.6e-08 Score=99.03 Aligned_cols=100 Identities=13% Similarity=0.189 Sum_probs=66.8
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc------chhhcccCCC--CC----------------CC-----------CCcce
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS------VEMKDRQNDG--AS----------------VG-----------SNTKL 290 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~------~~~~~r~~~~--~~----------------~~-----------~~~~~ 290 (436)
...||||||||||||++|+++|+.++ .++......+ .. .+ .....
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 35799999999999999999998642 1221111111 00 00 00111
Q ss_pred eecceeecccCcccCCCCeEEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHh
Q 013823 291 TLSGILNFIDGLWSSCGDERIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYL 354 (436)
Q Consensus 291 ~~s~LL~~ldg~~~~~~~~~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l 354 (436)
..+.||..|+.- .+..++|++||.++.+.|++++ | .++|+.|+.++....+...+
T Consensus 98 a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 98 AANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 223355555442 3457888888999999999999 8 88999999999888877765
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.59 E-value=6.4e-08 Score=94.61 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=37.8
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+++|.....+.+.+.+.... ..+.++||+||||||||++|++|++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 57788777787777665432 2356899999999999999999999763
No 81
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.56 E-value=8.8e-08 Score=116.10 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=40.0
Q ss_pred eEEEEEecCCcC-----CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhcc
Q 013823 309 ERIIVFTTNHKE-----RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGI 356 (436)
Q Consensus 309 ~~ivI~TTN~~~-----~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~ 356 (436)
++.+|+|||+|. .|||+|+| || ..|.++.|+.+++..|+..++..
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred CEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 368999999995 89999999 99 78999999999999999888753
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.52 E-value=1.9e-08 Score=87.30 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=35.6
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
+++|.....+.+.+.+.... .....+||+||||||||++|++|++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46777777777777665332 234679999999999999999999986
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.44 E-value=2.1e-07 Score=83.15 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=42.4
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.+|++++......+.+.+.+..+.. .+..+.+++++|+||||||||+|++++|+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVH------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHH------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHH------hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899988754444445455554442 33344568899999999999999999999873
No 84
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.37 E-value=3.8e-07 Score=87.26 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=24.8
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+++++++||||||||||++|.|||+.++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4567899999999999999999999754
No 85
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.33 E-value=1.8e-07 Score=99.98 Aligned_cols=53 Identities=34% Similarity=0.340 Sum_probs=43.4
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...+|..|++++|.+.+++.|...+. ....++|+||||||||++|++||+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34567889999999988877755443 235899999999999999999999875
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.19 E-value=2e-06 Score=78.07 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=40.7
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCC-CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+|+++++.....+.+.+.+..++... ... .+++++|+||||||||++++++++++.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999886644444445555444321 111 237899999999999999999999874
No 87
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.14 E-value=1.7e-06 Score=79.47 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=27.3
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++|.++++|+|||||||||++|.++|+.+.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467778899999999999999999999986
No 88
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.11 E-value=6.6e-07 Score=77.25 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=36.5
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+++|.....+.+.+.+..+. ....++||+||||||||++|+++++..+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 46778788888877776443 2346799999999999999999998876
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.08 E-value=4.9e-06 Score=83.44 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=40.1
Q ss_pred CCcccccChhHHHHHHHHH-HHHHhhHHHHHHhCC-CCcceeeE--eCCCCCChhHHHHHHHHHh
Q 013823 210 TFDTLAMDPELKQMILDDL-DRFLRRKEFYRRVGK-AWKRGYLL--YGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l-~~~l~~~~~~~~~g~-~~~rg~LL--~GPpGtGKT~la~aiA~~l 270 (436)
..+.++|-++..+.|.+.+ ..... |. ..++.++| +||||||||++++++++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3477899998888887776 53322 10 23467899 9999999999999999876
No 90
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.06 E-value=5.2e-06 Score=81.16 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=40.8
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+|+++.+....+..+.+.+..++.. .+.....+++||||||||||+||.+||+++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999987654444444444444432 2212357999999999999999999999775
No 91
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.84 E-value=7.6e-06 Score=95.59 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=44.2
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhh----------HHHHHH------hC------------CCCcceeeEeCCCCCChh
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRR----------KEFYRR------VG------------KAWKRGYLLYGPPGTGKS 260 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~----------~~~~~~------~g------------~~~~rg~LL~GPpGtGKT 260 (436)
.+|++|.|.++.|+.+.+.+..++.. ++.++. .| .|..|.+|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 68999999999999999999999854 445554 22 333444999999999999
Q ss_pred HHHHHHHHHhc
Q 013823 261 SLIAAMANYLS 271 (436)
Q Consensus 261 ~la~aiA~~l~ 271 (436)
+||+++|.+..
T Consensus 1097 ~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1097 TLTLQVIAAAQ 1107 (1706)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998653
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.52 E-value=0.00011 Score=89.52 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=64.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-----------------------CCCCCcceeeccee------
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA-----------------------SVGSNTKLTLSGIL------ 296 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~-----------------------~~~~~~~~~~s~LL------ 296 (436)
..|.+++||||||||++++++|+.+|..+..-...+. +.+.....+++.+-
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i 724 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQI 724 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHH
Confidence 4789999999999999999999999954433322211 01111112222221
Q ss_pred -ecc---------cCcccCCCCeEEEEEecC----CcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHH
Q 013823 297 -NFI---------DGLWSSCGDERIIVFTTN----HKERIDPALLRPGRMDVHINMSYCTVHGFKVLASN 352 (436)
Q Consensus 297 -~~l---------dg~~~~~~~~~ivI~TTN----~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~ 352 (436)
+.+ +|-.-.......|++|.| ....|++++.+ || +.|.|..|+.+...++.-.
T Consensus 725 ~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 725 QNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp HHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHHH
T ss_pred HHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHHH
Confidence 111 111001112345788888 45579999999 99 7899999999887766533
No 93
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.47 E-value=0.0003 Score=86.47 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=36.5
Q ss_pred eEEEEEecCCc-----CCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 309 ERIIVFTTNHK-----ERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 309 ~~ivI~TTN~~-----~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
++.+|+|.|.| ..|+++|+| ||.. |.+++|+.++...|+..++.
T Consensus 1422 d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1422 KIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHHHHH
Confidence 35688999988 369999999 9964 89999999999888776653
No 94
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.29 E-value=0.00012 Score=65.15 Aligned_cols=30 Identities=23% Similarity=0.249 Sum_probs=26.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
++.++|.|||||||||+++.+|..++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 457899999999999999999999995544
No 95
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.26 E-value=0.00013 Score=64.95 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=26.3
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
...+.-++|.||||+||||+++.++..++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 3445678999999999999999999998843
No 96
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.23 E-value=0.00017 Score=63.63 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+-++|.||||+||||+++++|..++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 56899999999999999999999873
No 97
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.23 E-value=9.9e-05 Score=75.75 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=23.5
Q ss_pred eEEEEEecCCcC-----------CCCccccCCCceeEEE-EcCCCCHHH
Q 013823 309 ERIIVFTTNHKE-----------RIDPALLRPGRMDVHI-NMSYCTVHG 345 (436)
Q Consensus 309 ~~ivI~TTN~~~-----------~lD~AllRpGR~d~~I-~~~~p~~~~ 345 (436)
...||+|+|..+ .|+++++. |||..+ .+++|+.+.
T Consensus 339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred CeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 468999999865 78899999 998754 467777654
No 98
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.23 E-value=0.00017 Score=65.26 Aligned_cols=31 Identities=32% Similarity=0.297 Sum_probs=26.4
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
..+.++|.|||||||||+++++|..++..+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 3457999999999999999999999985443
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.21 E-value=0.00016 Score=62.79 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
....++|+||+|+|||+|++++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999987
No 100
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.13 E-value=0.00024 Score=62.29 Aligned_cols=28 Identities=39% Similarity=0.657 Sum_probs=24.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
.-+.|.|||||||||+++.+|+.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~ 32 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEF 32 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4588999999999999999999988443
No 101
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.12 E-value=0.00062 Score=62.11 Aligned_cols=35 Identities=14% Similarity=0.030 Sum_probs=28.9
Q ss_pred EEEEEecCCcCCCCccccCCCceeEEEEcCCCCHHHH
Q 013823 310 RIIVFTTNHKERIDPALLRPGRMDVHINMSYCTVHGF 346 (436)
Q Consensus 310 ~ivI~TTN~~~~lD~AllRpGR~d~~I~~~~p~~~~r 346 (436)
.-||++|+.++.||.+++. |++.+++++.|....+
T Consensus 124 ~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~~~ 158 (199)
T 2r2a_A 124 IDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMGMR 158 (199)
T ss_dssp CEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSCCE
T ss_pred eEEEEECCCHHHHhHHHHH--HhheEEEEcCcccCcc
Confidence 4578888889999999888 9999999988765443
No 102
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.10 E-value=0.00022 Score=62.93 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=24.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
.++|.|||||||||++++||..++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 4889999999999999999999985443
No 103
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.09 E-value=0.00024 Score=61.90 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=24.4
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
-++|.||||+||||+++.+|..++..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 4789999999999999999999985543
No 104
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.08 E-value=0.00056 Score=65.92 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.2
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.+.-++|.||||+||||+++.++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999987
No 105
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.05 E-value=0.00034 Score=61.89 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=25.3
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
++.++|.||||+|||++++++|..++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 35699999999999999999999998443
No 106
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.04 E-value=0.00029 Score=61.90 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHH-Hhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMAN-YLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~-~l~ 271 (436)
|.-++|.||||+||||+++.++. .++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 34688999999999999999999 566
No 107
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.01 E-value=0.00031 Score=62.33 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=24.2
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
-++|.|+||+|||++++.+|..+|..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGL 30 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 488999999999999999999999544
No 108
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.97 E-value=0.00029 Score=62.79 Aligned_cols=29 Identities=38% Similarity=0.487 Sum_probs=24.4
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+..+.-+.|.||||+||||++++||+.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC
Confidence 34455688999999999999999999764
No 109
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.96 E-value=0.00042 Score=61.82 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.3
Q ss_pred cceeeEeCCCCCChhHHHHHHHHH-hcch
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANY-LSVE 273 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~-l~~~ 273 (436)
+..++|.|+|||||||+++.+|.. +|..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~ 38 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQ 38 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 345899999999999999999999 6743
No 110
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.93 E-value=0.00028 Score=69.15 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=25.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|++.++.+||+||||||||+||.++|...+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G 148 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALG 148 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCC
Confidence 455566789999999999999999998643
No 111
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.93 E-value=0.00043 Score=61.39 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=23.0
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-++|.||||+||||+++.+|..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999887
No 112
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.93 E-value=0.0005 Score=63.62 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.7
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
..++-++|.||||+||+|.|+.||..+|+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 44567889999999999999999999994
No 113
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.92 E-value=0.00039 Score=60.80 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=25.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
..++|.|+|||||||+++.+|..+|.++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46899999999999999999999995543
No 114
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.91 E-value=0.00056 Score=64.40 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=24.1
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.-++|.||||+||||+++.++..++
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345689999999999999999999986
No 115
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.90 E-value=0.00046 Score=61.16 Aligned_cols=27 Identities=30% Similarity=0.660 Sum_probs=23.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.-++|.|||||||||+++.+|..++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 358899999999999999999988843
No 116
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00049 Score=61.12 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+.-++|.|+|||||||+++.+|..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345889999999999999999999884
No 117
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.87 E-value=0.00058 Score=61.56 Aligned_cols=28 Identities=36% Similarity=0.622 Sum_probs=24.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
.-++|.||||+||||+++.+|..++...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~ 48 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQ 48 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 3588999999999999999999998543
No 118
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.86 E-value=0.00038 Score=61.71 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=22.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-++|.||||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999887
No 119
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.86 E-value=0.00059 Score=61.66 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=24.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
+.-+.|.||||+||||++++|++.+|...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~ 57 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF 57 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE
Confidence 45588999999999999999999988443
No 120
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.86 E-value=0.00049 Score=64.98 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
-++|.|||||||||++++||..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i 30 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVV 30 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEE
Confidence 4789999999999999999999985443
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.85 E-value=0.00052 Score=59.51 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.0
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
-++|.||||+||||+++.+ ..+|..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 4789999999999999999 888843
No 122
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.85 E-value=0.00061 Score=61.48 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
+.-++|.||||+||||+++.|+..+|....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 346899999999999999999999985443
No 123
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.83 E-value=0.0005 Score=60.69 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=21.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
.-++|.|+||+||||+++.+|..++..+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999985543
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.83 E-value=0.00061 Score=63.67 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=23.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+.-+.|.||||+||||++++||..+|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456889999999999999999988873
No 125
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.83 E-value=0.00095 Score=82.16 Aligned_cols=107 Identities=20% Similarity=0.136 Sum_probs=63.8
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhhcccCCCC-----------------------CCCCCcceeecceeecc---
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKDRQNDGA-----------------------SVGSNTKLTLSGILNFI--- 299 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~r~~~~~-----------------------~~~~~~~~~~s~LL~~l--- 299 (436)
..|..+.||+|||||.+++.+|+.+|.....-..... +.+.....+++.+...|
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I 683 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTI 683 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999943322211111 00111111222211111
Q ss_pred -------------c-CcccCCCCeEEEEEecC----CcCCCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhc
Q 013823 300 -------------D-GLWSSCGDERIIVFTTN----HKERIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLG 355 (436)
Q Consensus 300 -------------d-g~~~~~~~~~ivI~TTN----~~~~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~ 355 (436)
+ |-.-.-....-|++|.| ....|+++|.. || +.|.|+.||.+...++.-.-.|
T Consensus 684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L~s~G 754 (3245)
T 3vkg_A 684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVMLYSQG 754 (3245)
T ss_dssp HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHHHHTTT
T ss_pred HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHHHHHcc
Confidence 1 21001112356788888 34589999999 88 7799999999887766544333
No 126
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.82 E-value=0.00058 Score=59.67 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=24.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
+-++|.|+||+|||++++.+|..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEF 30 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 3588999999999999999999998543
No 127
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.81 E-value=0.00061 Score=60.36 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=25.1
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.+.-++|.|||||||||+++.+|..++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 33 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 34568899999999999999999998843
No 128
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.80 E-value=0.00071 Score=59.45 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=24.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
.-++|.||||+||||+++.++..+|...
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~ 36 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAF 36 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEE
Confidence 4588999999999999999999888443
No 129
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.77 E-value=0.00062 Score=62.04 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=22.4
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
++|.||||+||||+++.+|..++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999984
No 130
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.77 E-value=0.00066 Score=60.50 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=24.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
+.-++|.|||||||||+++.+|..++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3568899999999999999999999843
No 131
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.77 E-value=0.0006 Score=62.86 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=24.3
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+.-++|.||||+||||+++.||..++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 356899999999999999999999984
No 132
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.77 E-value=0.00063 Score=62.44 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=24.3
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+.-++|.||||+||||+++.||..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356899999999999999999999984
No 133
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.76 E-value=0.00058 Score=62.60 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=24.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.-++|.||||+||||+++.||..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCce
Confidence 458899999999999999999999843
No 134
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.75 E-value=0.00066 Score=61.79 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.8
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
++|.||||+||||+++.+|..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6889999999999999999999843
No 135
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.75 E-value=0.0021 Score=62.23 Aligned_cols=48 Identities=25% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..-+.++|-++..+.|.+.+.. | +.++++||+|+|||+|++.+++..+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 3446678888877777665431 2 6799999999999999999998764
No 136
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.00078 Score=61.69 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=24.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.-++|.||||+||||+++.+|..++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 458899999999999999999999843
No 137
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.74 E-value=0.00071 Score=60.98 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.-++|.||||+||||+++.+|..++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 45789999999999999999999875
No 138
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.73 E-value=0.00068 Score=60.58 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=24.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
+.-++|.||||+||||+++.+|..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~ 39 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFT 39 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3568899999999999999999999843
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.72 E-value=0.00075 Score=60.32 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=22.7
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
+.|.||+|+|||||++.|++.+++.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6789999999999999999999743
No 140
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.71 E-value=0.00065 Score=67.40 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=25.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
..++|.||||+|||+++++||+.++..+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3589999999999999999999999665
No 141
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.69 E-value=0.00082 Score=60.72 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.-+.|.||+||||||++++||..++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999999984
No 142
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.69 E-value=0.001 Score=60.34 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.2
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...++-++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45566789999999999999999999874
No 143
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.67 E-value=0.0016 Score=66.85 Aligned_cols=55 Identities=24% Similarity=0.269 Sum_probs=35.4
Q ss_pred ccCCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 204 NLEHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 204 ~~~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
....|.+|+++ .+++++.+...+. ++.. ..+.+++.||||||||+++.+++..+.
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av~~~~~-~i~~----------~~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAFNIVMK-AIKE----------KKHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp -----CCSSCC--CHHHHHHHHHHHH-HHHS----------SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccCCCccccC--CHHHHHHHHHHHH-HHhc----------CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35667788876 6666666544332 2221 123789999999999999999998774
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.67 E-value=0.00078 Score=61.43 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++.+.-++|+||||+|||+|++.+|..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555668999999999999999999765
No 145
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.67 E-value=0.00088 Score=59.97 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
+.|.|+|||||||+++.+|+.++..+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~ 28 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEI 28 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcE
Confidence 67999999999999999999998543
No 146
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.67 E-value=0.00089 Score=58.23 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
++|.|+||+||||+++.++..++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~ 28 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPF 28 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 78999999999999999999998544
No 147
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.65 E-value=0.001 Score=61.59 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=24.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
..++|.|||||||||+++.||..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 458999999999999999999999843
No 148
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.64 E-value=0.00089 Score=61.38 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=22.4
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
++|.||||+||+|.|+.||..+|+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 678999999999999999999994
No 149
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.62 E-value=0.0011 Score=59.74 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.-++|.|||||||||+++.+|..++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 45889999999999999999999984
No 150
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.59 E-value=0.0012 Score=58.61 Aligned_cols=26 Identities=15% Similarity=0.402 Sum_probs=22.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-+.|.||+|+|||||+++|++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35588999999999999999998764
No 151
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.58 E-value=0.0012 Score=61.84 Aligned_cols=29 Identities=21% Similarity=0.356 Sum_probs=25.2
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.+.-++|.||||+||||+++.++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~ 56 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYC 56 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 44568999999999999999999998843
No 152
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.57 E-value=0.0012 Score=59.90 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
|++.+.-++|+||||+|||+++..+|.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666789999999999999999998
No 153
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.52 E-value=0.0013 Score=59.13 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.9
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.+.-+.|.||||+||||+++.|++.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34558899999999999999999987
No 154
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.51 E-value=0.0031 Score=67.60 Aligned_cols=46 Identities=30% Similarity=0.467 Sum_probs=30.3
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
..|-+-.+++.+++.|...+. . +.-.|+.||||||||+++..+...
T Consensus 183 ~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 183 LTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp CCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHH
Confidence 344444578888888866543 0 123689999999999866555443
No 155
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.51 E-value=0.0012 Score=59.65 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
+.-+.|.|+|||||||+++.++..++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345889999999999999999998874
No 156
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.51 E-value=0.0013 Score=60.68 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.8
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
++|.||||+||||+++.+|..++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~ 27 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLA 27 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 7899999999999999999998843
No 157
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.48 E-value=0.0017 Score=63.10 Aligned_cols=45 Identities=24% Similarity=0.143 Sum_probs=34.4
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.++|-++..+.|.+ +. . +.++++||+|+|||+|++.+++.++
T Consensus 11 ~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 44567887776666644 32 1 4799999999999999999998764
No 158
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.47 E-value=0.0013 Score=60.07 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=22.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.|||||||||+++.+++.+|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999987
No 159
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.47 E-value=0.0011 Score=60.37 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.9
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
++|.||||+||||+++.+|..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 7899999999999999999999843
No 160
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.45 E-value=0.0013 Score=60.69 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++...-++|+||||+|||+|+..+|..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4566667899999999999999999985
No 161
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.44 E-value=0.0011 Score=60.49 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=24.9
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|++...-+.|.||+|+|||||++.||..+-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455556689999999999999999998653
No 162
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.43 E-value=0.0037 Score=62.75 Aligned_cols=49 Identities=14% Similarity=0.269 Sum_probs=33.9
Q ss_pred cccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 212 DTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 212 ~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.++|.....+.+.+.+.... +....+|++|++||||+++|++|.....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~ 185 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSD 185 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred hhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcC
Confidence 345565555555555554311 2235689999999999999999998764
No 163
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.43 E-value=0.0015 Score=58.17 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.|.||||+||||+++.|++.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999998664
No 164
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.42 E-value=0.0017 Score=57.71 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-++|.|+||+||||+++.+|..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999886
No 165
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.41 E-value=0.0014 Score=59.29 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-++|.|+|||||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999999876
No 166
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.41 E-value=0.003 Score=57.40 Aligned_cols=26 Identities=42% Similarity=0.600 Sum_probs=22.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-+.|.||+|+|||||+++|++.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34577999999999999999999875
No 167
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.41 E-value=0.0029 Score=61.96 Aligned_cols=106 Identities=12% Similarity=0.047 Sum_probs=61.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcch------hhcccCCCC-----------------------CCCC-Ccceeecc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVE------MKDRQNDGA-----------------------SVGS-NTKLTLSG 294 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~------~~~r~~~~~-----------------------~~~~-~~~~~~s~ 294 (436)
.+..||||||+|+||++.++++++.+... ......... ..+. ..+...+.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~a 96 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQ 96 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHH
Confidence 44689999999999999999999866311 011111000 0000 11122233
Q ss_pred eeecccCcccCCCCeEEEEEecCCcC------CCCccccCCCceeEEEEcCCCCHHHHHHHHHHHhccc
Q 013823 295 ILNFIDGLWSSCGDERIIVFTTNHKE------RIDPALLRPGRMDVHINMSYCTVHGFKVLASNYLGIK 357 (436)
Q Consensus 295 LL~~ldg~~~~~~~~~ivI~TTN~~~------~lD~AllRpGR~d~~I~~~~p~~~~r~~i~~~~l~~~ 357 (436)
|+..++... +..++|++|+.++ .+-+++.. |. ..++|..++..+....+...+...
T Consensus 97 Ll~~le~p~----~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~ 158 (343)
T 1jr3_D 97 LLTLTGLLH----DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQL 158 (343)
T ss_dssp HHHHHTTCB----TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHT
T ss_pred HHHHHhcCC----CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHc
Confidence 444444332 3355666555533 45567776 66 578899898888877777766443
No 168
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.38 E-value=0.0018 Score=58.94 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-+.|.||+|+||||+++.|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999999875
No 169
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.38 E-value=0.0014 Score=60.61 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
|++.+.-++|.||+|+|||||+++++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 455566799999999999999999984
No 170
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.37 E-value=0.0017 Score=57.48 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.4
Q ss_pred eeEeCCCCCChhHHHHHHHHHh---cchhh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL---SVEMK 275 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l---~~~~~ 275 (436)
+.|.|+||+||||+++.++..+ |....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6799999999999999999988 65443
No 171
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.35 E-value=0.0018 Score=57.72 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.1
Q ss_pred eeEeCCCCCChhHHHHHHHHHh---cchhh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL---SVEMK 275 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l---~~~~~ 275 (436)
+.|.|||||||||+++.++..+ |....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6789999999999999999998 75544
No 172
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.31 E-value=0.0021 Score=56.65 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.3
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
+.-+.|.|++|+||||+++.++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999987
No 173
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.31 E-value=0.0023 Score=57.44 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=22.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|+||||+++.|++.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4577999999999999999999864
No 174
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.31 E-value=0.002 Score=63.06 Aligned_cols=29 Identities=34% Similarity=0.600 Sum_probs=25.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
++.++|.||+|||||+++..+|..++..+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~i 33 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCEL 33 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 45789999999999999999999998443
No 175
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.26 E-value=0.0016 Score=59.96 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=24.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++.+.-++|+||||+|||+++..+|...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666678999999999999998887654
No 176
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.23 E-value=0.0024 Score=58.13 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.7
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.-++|.|+||+||||+++.++..++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999999999886
No 177
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.23 E-value=0.0022 Score=60.59 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=25.8
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMK 275 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 275 (436)
...+.|.||||+||||+++.+|..+|..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 356999999999999999999999985443
No 178
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.22 E-value=0.0025 Score=59.58 Aligned_cols=26 Identities=38% Similarity=0.471 Sum_probs=23.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.-+.|.|||||||||+++.||..++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889999999999999999999883
No 179
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.22 E-value=0.0021 Score=57.76 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.5
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
-+.|.||||+||||+++.+|..+|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 57899999999999999999999843
No 180
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.22 E-value=0.0019 Score=58.16 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
-+.|.||+||||||+++.+|+ +|+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 378999999999999999999 873
No 181
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.20 E-value=0.0017 Score=64.64 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=24.6
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++..+-++|+||||+|||+|+..+|..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555668999999999999999999875
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.18 E-value=0.0021 Score=57.95 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
-+.|.|||||||||+++.+|+ +|..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~ 28 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVP 28 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 467999999999999999998 7743
No 183
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.18 E-value=0.0032 Score=61.12 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHhC--CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 218 PELKQMILDDLDRFLRRKEFYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 218 ~~~k~~i~~~l~~~l~~~~~~~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.||+.+.
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456666666665554321001122 23344588999999999999999999875
No 184
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.18 E-value=0.0024 Score=60.28 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-++|.|+||+||||+++.++..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 45889999999999999999998
No 185
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.16 E-value=0.0026 Score=56.70 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=22.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+-+.|.||+|+||||++++|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998875
No 186
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.15 E-value=0.0026 Score=56.96 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=24.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh-cchhh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL-SVEMK 275 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l-~~~~~ 275 (436)
.-+.|.||||+||||+++.+|..+ |....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~ 34 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIK 34 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceE
Confidence 457899999999999999999998 45443
No 187
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.14 E-value=0.0027 Score=57.39 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=22.5
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-+.|.||+|+|||||++.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45688999999999999999998763
No 188
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.13 E-value=0.002 Score=61.29 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=24.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34455668999999999999999999854
No 189
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.08 E-value=0.0035 Score=60.95 Aligned_cols=30 Identities=37% Similarity=0.607 Sum_probs=25.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++.+.-+.|.||+|+|||||+++|++.+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 456666799999999999999999999863
No 190
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.07 E-value=0.0042 Score=54.37 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.4
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
+...-+.|.||.|+|||||+++|++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444458899999999999999999987
No 191
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.02 E-value=0.0047 Score=59.56 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=22.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-+.+.||+|+||||+++.|+..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34577999999999999999998876
No 192
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.01 E-value=0.0037 Score=56.71 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=23.2
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.-+.|.||+|+|||||+++|++.+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 334578999999999999999999874
No 193
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.00 E-value=0.0025 Score=63.19 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.6
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++..+-++|+||||+|||+|+..+|...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666679999999999999999998755
No 194
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.99 E-value=0.0031 Score=60.46 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=26.0
Q ss_pred hCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 241 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 241 ~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.|++...-++|.||||+|||+|++.||..+.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3556666789999999999999999998764
No 195
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.97 E-value=0.0042 Score=58.38 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.-+.|.||+||||||+++.||..+|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35789999999999999999988883
No 196
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.97 E-value=0.0034 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++++|.||+|+|||+||..++...+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 47899999999999999999998876
No 197
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.96 E-value=0.0035 Score=58.76 Aligned_cols=28 Identities=25% Similarity=0.212 Sum_probs=24.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
+.-+.|.|||||||||+++.|+..++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 3458899999999999999999998854
No 198
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.96 E-value=0.0034 Score=57.89 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=23.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++...-++++|+||+|||++|..+|..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4566667999999999999999887653
No 199
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.95 E-value=0.0039 Score=57.27 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.7
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.+.-+.|.||+|+|||||++.|++.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34458899999999999999999977
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.94 E-value=0.0029 Score=75.10 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=26.3
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|++.+++++||||||||||+||.++|.+..
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 377788999999999999999999987653
No 201
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.94 E-value=0.0037 Score=59.83 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh-c
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL-S 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l-~ 271 (436)
.-++|.||||+||||+++.++..+ +
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~ 28 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 458899999999999999999864 6
No 202
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.93 E-value=0.0034 Score=56.74 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|+||||+++.|++.++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4477999999999999999999877
No 203
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.92 E-value=0.0033 Score=62.43 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=25.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++..+-++|+||||+|||+||..+|..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46666779999999999999999998765
No 204
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.91 E-value=0.0044 Score=61.61 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhC--CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 219 ELKQMILDDLDRFLRRKEFYRRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 219 ~~k~~i~~~l~~~l~~~~~~~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+++.+.+.+...+........+. ...+.-++|.||+|+||||+++.||+.+.
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 445556666655554321001122 23344588999999999999999999875
No 205
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.90 E-value=0.0036 Score=56.59 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.0
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
-+.|.|++||||||+++.++..+|+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~ 39 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAH 39 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 47799999999999999999998843
No 206
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.89 E-value=0.0042 Score=55.99 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=22.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|-++|.||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5689999999999999999987753
No 207
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.87 E-value=0.0046 Score=63.96 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-++|.||+|+||||+++.||+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 33478999999999999999999875
No 208
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.85 E-value=0.0085 Score=54.05 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
+.-+.|.||+|+||||+++.++..+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3447799999999999999999876
No 209
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.83 E-value=0.0088 Score=59.56 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=34.1
Q ss_pred ccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 213 TLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 213 ~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++|.......+.+.+.... +....+|++|++||||+.+|+++....+
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 45666666666655444221 1235699999999999999999998765
No 210
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.82 E-value=0.0038 Score=55.78 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.-+.|.|++||||||+++.+|.. |.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~ 33 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GY 33 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TC
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CC
Confidence 45889999999999999999998 73
No 211
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.81 E-value=0.0058 Score=55.54 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-+.|.||+|+|||||+++|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999998765
No 212
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.81 E-value=0.0036 Score=56.56 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh-c
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL-S 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l-~ 271 (436)
.-+.|.||||+||||+++.+++.+ +
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~ 47 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPN 47 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 347799999999999999999987 5
No 213
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.79 E-value=0.0074 Score=59.95 Aligned_cols=24 Identities=50% Similarity=0.814 Sum_probs=22.0
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+++.||+|+||||+.+++++.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 488999999999999999999875
No 214
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.78 E-value=0.0035 Score=62.09 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-+.|+||||+|||+|++.+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45556668999999999999999999875
No 215
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.77 E-value=0.01 Score=60.21 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=34.4
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcce-eeEeCCCCCChhHHHHHHHHHhc
Q 013823 208 PSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 208 ~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.+++++....+.+..+... + ..+.+ +++.||+|+||||+.+++++.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l----~-----------~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL----I-----------KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH----H-----------TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHH----H-----------HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34677777766554433321 1 12344 78999999999999999999886
No 216
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.76 E-value=0.0051 Score=59.80 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 220 LKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 220 ~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+++.+.+.+...+.....+ .+....++-+++.||+|+||||++..+|..+.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 4555555555555322100 01122345688999999999999999998874
No 217
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.76 E-value=0.0037 Score=61.03 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-++|+||||+|||+++..+|...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 56666679999999999999999998754
No 218
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.75 E-value=0.0053 Score=60.55 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=24.4
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-++|+||||+|||+|+..+|...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45655668999999999999999998753
No 219
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.74 E-value=0.048 Score=61.79 Aligned_cols=53 Identities=23% Similarity=0.210 Sum_probs=39.7
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
..|.....++|-++..++|.+.+... -...+-+.|+|++|.|||+||+.+++.
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 34556677899999888887765310 122456889999999999999998875
No 220
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.72 E-value=0.0051 Score=55.90 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=23.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.-+.|.||||||||++++.+|..+|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 358899999999999999999999833
No 221
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.70 E-value=0.0049 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.3
Q ss_pred cceeeEeCCCCCChhHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMA 267 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA 267 (436)
+.-+.|.||+|+|||||++++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3448899999999999999643
No 222
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.69 E-value=0.0062 Score=56.21 Aligned_cols=29 Identities=38% Similarity=0.489 Sum_probs=23.6
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.+.-+.|.||+|+|||||+++|++.+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34455688999999999999999999875
No 223
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.68 E-value=0.0049 Score=62.46 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=26.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
+.-++|.||||+||||+++.++..++....+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4558899999999999999999998865544
No 224
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.68 E-value=0.006 Score=56.84 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.4
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
-+-|.||+|+||||+++.|++.+|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhch
Confidence 3678999999999999999998874
No 225
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.67 E-value=0.0067 Score=56.24 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||||+||||+++.+++.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3477899999999999999999986
No 226
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.67 E-value=0.0065 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.-+.|.||||||||++++.+|..+|+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34789999999999999999999883
No 227
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.66 E-value=0.007 Score=57.39 Aligned_cols=28 Identities=39% Similarity=0.615 Sum_probs=23.6
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
....-++|.||+|+||||+++++++.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3344588999999999999999999775
No 228
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=95.61 E-value=0.0076 Score=46.01 Aligned_cols=46 Identities=7% Similarity=-0.200 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 339 SYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 339 ~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
|+|+.++|..||+.++.... .....++..|+..+ +||+|||...|.
T Consensus 1 plPd~~~R~~Il~~~l~~~~--~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMN--LTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSE--ECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCC--CCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 78999999999999997653 11223456666655 599999998875
No 229
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.59 E-value=0.0062 Score=54.90 Aligned_cols=24 Identities=42% Similarity=0.749 Sum_probs=21.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.|.||+|+||||+++.||+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 377999999999999999999873
No 230
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.59 E-value=0.0061 Score=55.45 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=22.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.-+.|.|++|+||||+++.++. +|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~ 30 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGIN 30 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCE
Confidence 4578999999999999999998 7744
No 231
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.56 E-value=0.0022 Score=58.00 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.|.||||+||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999886
No 232
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.55 E-value=0.0092 Score=63.04 Aligned_cols=25 Identities=44% Similarity=0.582 Sum_probs=22.0
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+-+++.||||||||+++.+++..+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999988654
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.54 E-value=0.014 Score=57.31 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.5
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.-+.|.||+|+||||+++.||+.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345588999999999999999999775
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.53 E-value=0.0059 Score=60.13 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=25.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
+-++|.||+|+|||+|+..||..++.++.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 458899999999999999999999955443
No 235
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.47 E-value=0.0051 Score=59.82 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=24.3
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-++|+||||+|||+++..+|...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45656668999999999999999998753
No 236
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.47 E-value=0.0054 Score=61.16 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=24.6
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++..+-++|+||||+|||+||..+|...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 45666779999999999999999988764
No 237
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.45 E-value=0.0073 Score=61.51 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-+++.||||+||||++..+|..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998775
No 238
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.39 E-value=0.01 Score=59.26 Aligned_cols=28 Identities=39% Similarity=0.615 Sum_probs=24.0
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+.-+++.||+|+||||++++|++.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4445588999999999999999999775
No 239
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.38 E-value=0.0089 Score=58.15 Aligned_cols=30 Identities=30% Similarity=0.607 Sum_probs=25.8
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
.++-+++.||+|+|||+|+..+|..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~i 38 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVEL 38 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEE
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcE
Confidence 345688999999999999999999998544
No 240
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.33 E-value=0.0049 Score=56.77 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=15.6
Q ss_pred cceeeEeCCCCCChhHHHHHHH-HHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMA-NYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA-~~l~ 271 (436)
+.-+.|.||+|+||||+++.|+ +.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3447899999999999999999 8763
No 241
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.30 E-value=0.014 Score=62.24 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=19.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
...++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999888777654
No 242
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.29 E-value=0.0075 Score=58.89 Aligned_cols=28 Identities=25% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++.. -++++||||+|||+|+..++...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 35554 47899999999999988776654
No 243
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.23 E-value=0.011 Score=57.59 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=25.0
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|+++..-++|.|+||+|||+++..+|...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56666679999999999999999998754
No 244
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.21 E-value=0.012 Score=52.33 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=23.0
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...-+.+.||+|+||||+++.++..+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 345688999999999999999998754
No 245
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.16 E-value=0.022 Score=55.65 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.|.||+||||||++++|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999875
No 246
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.16 E-value=0.0084 Score=54.44 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=26.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
.-+.|.||+|||||++++.+|..+|.++.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 357899999999999999999999966654
No 247
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.15 E-value=0.007 Score=61.06 Aligned_cols=28 Identities=32% Similarity=0.238 Sum_probs=22.7
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
|++...-++|+||||||||+|+..+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4555566899999999999999977643
No 248
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.14 E-value=0.01 Score=57.94 Aligned_cols=27 Identities=41% Similarity=0.628 Sum_probs=23.5
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++-+++.||+|+||||++..+|..+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998875
No 249
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.12 E-value=0.01 Score=58.45 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=24.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
.-+++.||+|+|||+++..||..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~i 35 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEI 35 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCce
Confidence 4688999999999999999999998443
No 250
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.10 E-value=0.012 Score=57.02 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=22.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-+.|.||+|+||||+++.||..+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 44588999999999999999999875
No 251
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.10 E-value=0.012 Score=57.23 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|+|||||++.|++.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3477899999999999999999764
No 252
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.08 E-value=0.01 Score=60.50 Aligned_cols=52 Identities=23% Similarity=0.450 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 219 ELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 219 ~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+++.|.+.+...+......... ...+.-+++.||||+||||++..+|..+.
T Consensus 74 ~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 74 HIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 34555666665555431100000 12356689999999999999999998775
No 253
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.02 E-value=0.011 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-.+|+||.|+|||++++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999998876
No 254
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.01 E-value=0.01 Score=52.89 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.8
Q ss_pred cceeeEeCCCCCChhHHHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.+|+||.||+|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 479999999999999999998874
No 255
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.024 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=21.9
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
...-+++.|++|+|||+|+.++++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34469999999999999999998743
No 256
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.95 E-value=0.011 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=22.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
.-+.|.|+|||||||+++.++ .+|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~ 101 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAY 101 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc
Confidence 348899999999999999999 57743
No 257
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.94 E-value=0.024 Score=59.49 Aligned_cols=50 Identities=22% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHHH
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
..-..++|-++..+.|.+.+.. +....+-++++||+|+|||+||..+++.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 3345678888888887665431 0122456899999999999999998753
No 258
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.92 E-value=0.012 Score=54.78 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.3
Q ss_pred eeEeCCCCCChhHHHHHHHHHhcch
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
+-|.||||+||||+++.||..+++.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCC
Confidence 5588999999999999999999843
No 259
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.89 E-value=0.012 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+.|.||.|+|||||+++|++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 44789999999999999999987
No 260
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.87 E-value=0.014 Score=56.95 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcch
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVE 273 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~ 273 (436)
+-+++.||+|+|||+|+..+|..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~ 30 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGE 30 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEE
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccc
Confidence 357889999999999999999999843
No 261
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.85 E-value=0.013 Score=61.13 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-++|.|+||+|||++++.+|..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999985
No 262
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.84 E-value=0.0095 Score=55.48 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..-+.|.||.|+|||||.++|++.+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34588999999999999999987654
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.83 E-value=0.0096 Score=55.54 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=22.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...-+.|.||.|+|||||+++|++.+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344588999999999999999988653
No 264
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.77 E-value=0.023 Score=62.28 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=19.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.-+++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999888777654
No 265
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.75 E-value=0.017 Score=59.12 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=25.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|++.+.-++|.||||+|||+|+..+|..+.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 556666689999999999999999997653
No 266
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.73 E-value=0.012 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=22.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||.++|++.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5577999999999999999998764
No 267
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.67 E-value=0.0087 Score=55.31 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||.++|++.+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4478999999999999999987653
No 268
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.63 E-value=0.012 Score=55.85 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||+++|++.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4478999999999999999988654
No 269
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.62 E-value=0.015 Score=52.05 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=19.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.-++++||||+|||+++..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999986666544
No 270
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.61 E-value=0.016 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.0
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-++|.||+|+|||+|++++++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 271
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.60 E-value=0.017 Score=55.87 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.0
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|+||||+++.|++.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3477899999999999999999765
No 272
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.52 E-value=0.013 Score=60.98 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=23.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.++++.||+|+||||+++++++.+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999999886
No 273
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.52 E-value=0.011 Score=56.81 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=18.9
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.|.||+|+||||+++.++..++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 477999999999999999999876
No 274
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.50 E-value=0.015 Score=57.61 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
..-+.|.||+|+|||||+++|++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345889999999999999999998864
No 275
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.49 E-value=0.013 Score=54.82 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=22.8
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...-+.|.||.|+|||||+++|++.+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334588999999999999999998764
No 276
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.49 E-value=0.012 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..-+.|.||.|+|||||.++|++.+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34588999999999999999988653
No 277
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.48 E-value=0.02 Score=58.43 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=24.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++++.-++|.|+||+|||+++..+|...
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56666668999999999999999998765
No 278
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.47 E-value=0.02 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|++++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 279
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.46 E-value=0.016 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.2
Q ss_pred eeeEeCCCCCChhHHHHHHHHHh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l 270 (436)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 280
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.45 E-value=0.012 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=21.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||.++|++.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4478999999999999999988653
No 281
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.45 E-value=0.018 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.+.|++|+||||+++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4478999999999999999999984
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.45 E-value=0.012 Score=55.57 Aligned_cols=25 Identities=40% Similarity=0.747 Sum_probs=21.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||.++|++.+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3478999999999999999988664
No 283
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.44 E-value=0.073 Score=52.44 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=20.8
Q ss_pred eeeEeCCCCCChhHHHHHHHHHh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l 270 (436)
-+.|.||||+|||||.+++++.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999865
No 284
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.44 E-value=0.018 Score=58.67 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=23.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++.+++.||||+||||++..+|..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999774
No 285
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.42 E-value=0.021 Score=50.49 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.+.|++|+|||+++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4578999999999999999998874
No 286
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.42 E-value=0.014 Score=55.41 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..-+.|.||.|+|||||+++|++.+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34478999999999999999988653
No 287
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.40 E-value=0.02 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.8
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-++|.||+|+||||++..+|..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998764
No 288
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.40 E-value=0.014 Score=55.61 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=22.8
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...-+.|.||.|+|||||+++|++.+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334588999999999999999998764
No 289
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.39 E-value=0.014 Score=55.21 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
+.+.-+.|.||.|+|||||+++|++.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 334458899999999999999998865
No 290
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.38 E-value=0.017 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 477999999999999999999775
No 291
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.36 E-value=0.019 Score=54.55 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..-+.|.||.|+|||||+++|++.+
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3448899999999999999999863
No 292
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.34 E-value=0.02 Score=52.53 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.|.||+|+||||+++.++..+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999886
No 293
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.34 E-value=0.02 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..++|.|+||+|||+|+.++++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998754
No 294
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.30 E-value=0.013 Score=54.92 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..-+.|.||.|+|||||+++|++.+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34478999999999999999988654
No 295
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.28 E-value=0.014 Score=55.83 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||+++|++.+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3478999999999999999998664
No 296
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.27 E-value=0.023 Score=48.08 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.2
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|+||+|||+|+.++.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999876
No 297
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.26 E-value=0.014 Score=54.89 Aligned_cols=25 Identities=48% Similarity=0.631 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||.++|++.+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3478999999999999999998764
No 298
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.26 E-value=0.042 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.-+.|.||||+|||||++++++.+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 347799999999999999999876
No 299
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.25 E-value=0.014 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||.++|++.+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3478999999999999999988654
No 300
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.24 E-value=0.019 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=19.0
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
-+.|.||+|+||||+++.++..+..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3678899999999999999998853
No 301
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.24 E-value=0.019 Score=53.14 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=25.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchhhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEMKD 276 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 276 (436)
.-+.+.|++|||||++++.+|..+|..+.+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357899999999999999999999965544
No 302
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.23 E-value=0.016 Score=57.63 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|||||||.++||+...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3477999999999999999998764
No 303
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.23 E-value=0.018 Score=54.03 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+.|.||.|+|||||+++|++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 44789999999999999999986
No 304
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.21 E-value=0.024 Score=48.20 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|++|+|||+|++++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 305
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.21 E-value=0.02 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+.|.|+||+|||+|++++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999763
No 306
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.20 E-value=0.017 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-+.|.||.|+|||||.++|++.+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34478999999999999999988653
No 307
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.19 E-value=0.021 Score=57.47 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
.-+++.||+|+|||+|+..+|..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~i 30 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEV 30 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeE
Confidence 4578999999999999999999998543
No 308
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.17 E-value=0.012 Score=55.42 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-|.|.|++|+||||+++.|+..+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3477899999999999999999983
No 309
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.17 E-value=0.02 Score=57.00 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|||||||.++||+.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3477999999999999999998764
No 310
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.14 E-value=0.02 Score=57.31 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|||||||.++||+...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3477999999999999999998764
No 311
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.13 E-value=0.023 Score=58.29 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=23.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-++|.|+||+|||++++.+|..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 312
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.033 Score=61.10 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=18.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHHh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l 270 (436)
-+|+.||||||||+++..++..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999877766543
No 313
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.11 E-value=0.015 Score=55.20 Aligned_cols=26 Identities=38% Similarity=0.672 Sum_probs=22.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..-+.|.||.|+|||||+++|++.+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34478999999999999999998664
No 314
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.11 E-value=0.025 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.4
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+++.|+||+|||+++-.+|..+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 488999999999999999998764
No 315
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.10 E-value=0.018 Score=54.70 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-+.|.||.|+|||||.++|++.+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34478999999999999999988653
No 316
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.09 E-value=0.026 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
.+++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
No 317
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.09 E-value=0.016 Score=55.50 Aligned_cols=25 Identities=32% Similarity=0.720 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||.++|++.+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3478999999999999999998764
No 318
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.09 E-value=0.026 Score=60.03 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
+-+++.||||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999988877654
No 319
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.08 E-value=0.021 Score=57.02 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=21.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|||||||.++||+.+.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3477999999999999999998764
No 320
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.06 E-value=0.022 Score=56.50 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|||||||.++||+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3477999999999999999998764
No 321
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.05 E-value=0.016 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||.++|++.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4478999999999999999988653
No 322
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.05 E-value=0.022 Score=48.84 Aligned_cols=21 Identities=43% Similarity=0.711 Sum_probs=19.2
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|+||+|||+|++++.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 589999999999999999875
No 323
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.05 E-value=0.027 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|++++.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
No 324
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.05 E-value=0.019 Score=56.99 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|||||||.++||+.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3477999999999999999998664
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.05 E-value=0.027 Score=48.50 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.3
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
.+++.|+||+|||+|++++.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.04 E-value=0.027 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|++++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998863
No 327
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.04 E-value=0.018 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=19.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-++|.|+||+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 328
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.02 E-value=0.021 Score=59.51 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
|++...-++|.||||+|||+|++.+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556668999999999999999999865
No 329
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.00 E-value=0.029 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998864
No 330
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.96 E-value=0.024 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|++++++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 331
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.92 E-value=0.016 Score=57.55 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=23.5
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.+..++|.||+|+|||||+++|++.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345689999999999999999998765
No 332
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.92 E-value=0.022 Score=59.37 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHH--HHHHh
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAA--MANYL 270 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~a--iA~~l 270 (436)
+++...-++|.||+|||||||+++ +++..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345566799999999999999999 45543
No 333
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.92 E-value=0.029 Score=48.32 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|++++.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998763
No 334
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.89 E-value=0.027 Score=58.53 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=23.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
..+.|.|++||||||+++++|..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999985
No 335
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.88 E-value=0.027 Score=47.96 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.2
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|++|+|||+|++++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999875
No 336
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.88 E-value=0.021 Score=57.00 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|||||||.++||+.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3477999999999999999998654
No 337
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.87 E-value=0.031 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.1
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-++++||||+|||+++..++..+.
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 367889999999999988887663
No 338
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.83 E-value=0.031 Score=47.49 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.3
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|++|+|||+|+.++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999876
No 339
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.79 E-value=0.028 Score=49.09 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.9
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-++|.|++|+|||+|++++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999863
No 340
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.79 E-value=0.027 Score=48.02 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=19.3
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|+||+|||+|+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 341
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.78 E-value=0.028 Score=51.72 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
.-+.|.||+|+||||+++.++..++.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34778899999999999999999984
No 342
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.75 E-value=0.033 Score=47.28 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.3
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|+||+|||+|++++.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999986
No 343
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.75 E-value=0.032 Score=54.87 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+.+..-++|.|+||+|||+|+..+|....
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 556666699999999999999999987653
No 344
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.75 E-value=0.031 Score=48.11 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|+||+|||+|++++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 345
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.74 E-value=0.027 Score=48.06 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=18.4
Q ss_pred eeEeCCCCCChhHHHHHHHH
Q 013823 249 YLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~ 268 (436)
+++.|+||+|||+|+.++.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999864
No 346
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.72 E-value=0.021 Score=55.93 Aligned_cols=26 Identities=19% Similarity=0.599 Sum_probs=23.0
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+..+++.||+|+|||||+++|++.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35689999999999999999998765
No 347
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.71 E-value=0.033 Score=48.52 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--++|.|++|+|||+|++++.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999986
No 348
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.71 E-value=0.034 Score=47.20 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.0
Q ss_pred eeEeCCCCCChhHHHHHHHHH
Q 013823 249 YLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~ 269 (436)
+++.|++|+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 349
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.70 E-value=0.05 Score=55.23 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.3
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++.+++.||+|+||||++..+|..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688889999999999999998875
No 350
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.67 E-value=0.031 Score=58.03 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++.+++.|+||+||||++..+|..+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999997764
No 351
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.63 E-value=0.02 Score=56.61 Aligned_cols=25 Identities=24% Similarity=0.639 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|||||||.++||+...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 3477999999999999999998664
No 352
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.60 E-value=0.024 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=21.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..-+.|.||.|+|||||.++|++.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3447899999999999999998865
No 353
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.58 E-value=0.033 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|+||||+++.++..+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4477899999999999999999886
No 354
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.57 E-value=0.036 Score=48.50 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 355
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.56 E-value=0.044 Score=55.88 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=22.1
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.|.||+|||||+|++.||+...
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 378999999999999999999876
No 356
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.56 E-value=0.037 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|+.++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999753
No 357
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.55 E-value=0.038 Score=47.52 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=19.9
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
.+++||.|+|||++..||.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998765
No 358
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.53 E-value=0.035 Score=51.36 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.2
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
-+.|.|++|+||||+++.+++.++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3678899999999999999998765
No 359
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=93.50 E-value=0.077 Score=41.32 Aligned_cols=48 Identities=8% Similarity=-0.175 Sum_probs=34.7
Q ss_pred EcCCCCHHHHHHHHHHHhcccCCCCCcHHHHHhhhhcC-CCCHHHHHHHHh
Q 013823 337 NMSYCTVHGFKVLASNYLGIKGKSHSLFGEIEGLIQST-DVTPAEVAEELM 386 (436)
Q Consensus 337 ~~~~p~~~~r~~i~~~~l~~~~~~~~~~~~i~~l~~~~-~~tpaei~~~l~ 386 (436)
+-.+|+.++|..|++.++..... ....++..|+..+ +||+|||.++|.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l--~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNL--TRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEE--CTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCC--CcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 34789999999999999976521 1122345555554 699999999885
No 360
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.50 E-value=0.038 Score=47.46 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|++++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 361
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.49 E-value=0.044 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
..-+++.|++|+|||+|+.++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999875
No 362
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.47 E-value=0.032 Score=47.92 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.2
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|++|+|||+|+.++.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 363
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.47 E-value=0.036 Score=56.54 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=24.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+.++.-+++.|+||+|||+++..+|....
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 555555699999999999999999987653
No 364
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.46 E-value=0.032 Score=65.56 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=25.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|++++..++|+||||+|||+|+..+|..+.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 466777899999999999999999987654
No 365
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.46 E-value=0.017 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.338 Sum_probs=22.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
..+.|.||+|+|||||++.|+..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35789999999999999999998753
No 366
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.46 E-value=0.019 Score=60.35 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..+.|.||+||||||++++||+.++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 3478999999999999999999985
No 367
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.45 E-value=0.041 Score=47.53 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|++++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998753
No 368
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.44 E-value=0.038 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|++|+|||+|++++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999998863
No 369
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.44 E-value=0.039 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.5
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-+++.||+|+||||++..+|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44577899999999999999998774
No 370
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.43 E-value=0.049 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-+++.|++|+|||+|+.++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999965
No 371
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.42 E-value=0.023 Score=54.69 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.-+.|.||.|+|||||.++|++.+.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34488999999999999999998764
No 372
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.41 E-value=0.044 Score=58.31 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
+.-++|.|+||+||||++++++..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999998
No 373
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.37 E-value=0.027 Score=56.52 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=22.6
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...-+.|.||+|||||||.++||+.+.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 334588999999999999999998653
No 374
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.36 E-value=0.041 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.9
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|+.++++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 375
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.35 E-value=0.041 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|++++++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45899999999999999999863
No 376
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.33 E-value=0.044 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.2
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.|.||+|+|||||++.|++...
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 388999999999999999999876
No 377
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.32 E-value=0.018 Score=57.14 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=21.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|||||||.++||+...
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3477999999999999999998664
No 378
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.31 E-value=0.068 Score=51.38 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=22.5
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++-+.+.||+|+||||++..+|..+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44577889999999999999998775
No 379
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.28 E-value=0.033 Score=47.42 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.5
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|+||+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378999999999999998853
No 380
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.27 E-value=0.039 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+++.|+||+|||||+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998864
No 381
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.27 E-value=0.11 Score=54.28 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=33.0
Q ss_pred cChhHHHHHHHHHHHHHhhHHHHHHhCCCCcceeeEeCCCCCChhHHHHHHHH
Q 013823 216 MDPELKQMILDDLDRFLRRKEFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 216 g~~~~k~~i~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
|-++.++.|.+.+..- +....+.+.++|++|.|||+||+.+++
T Consensus 132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 8888888887766321 112246688999999999999999997
No 382
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.26 E-value=0.033 Score=48.50 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.8
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-++|.|+||+|||+|++++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999864
No 383
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.25 E-value=0.041 Score=47.36 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--+++.|+||+|||+|++++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999864
No 384
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.22 E-value=0.038 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 385
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.20 E-value=0.048 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.1
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
+.|.||+|+|||||+++|++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 7799999999999999999863
No 386
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.19 E-value=0.038 Score=58.30 Aligned_cols=25 Identities=24% Similarity=0.277 Sum_probs=22.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-++|.|+||+||||++++++..++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3478999999999999999999976
No 387
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.15 E-value=0.046 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|++|+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998763
No 388
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.14 E-value=0.039 Score=47.98 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|++|+|||+|++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998753
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.14 E-value=0.046 Score=47.91 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998763
No 390
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.04 Score=56.53 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+....-+.|.||.|+|||||++.|++.+.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 33444588999999999999999999763
No 391
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.13 E-value=0.04 Score=56.09 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.4
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.++.+++.|++|+||||++..+|..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998774
No 392
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.12 E-value=0.031 Score=57.82 Aligned_cols=30 Identities=13% Similarity=0.052 Sum_probs=24.8
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|++...-++|.|+||+|||+++..+|....
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 455556689999999999999999987654
No 393
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.12 E-value=0.039 Score=48.23 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|+||+|||+|++++++.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998863
No 394
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.11 E-value=0.045 Score=47.80 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.1
Q ss_pred eeeEeCCCCCChhHHHHHHHHHh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l 270 (436)
-++|.|+||+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999998887654
No 395
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.11 E-value=0.047 Score=47.34 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--+++.|++|+|||+|++++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999885
No 396
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.10 E-value=0.042 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.|.||+|+||||.++.++..+.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999885
No 397
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.09 E-value=0.065 Score=54.16 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.9
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
-+.|.||+|+|||||+++|++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999999998554
No 398
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.08 E-value=0.015 Score=53.96 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+.|.||.|+|||||.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 34789999999999999999876
No 399
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.07 E-value=0.019 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..-+.|.||+|+|||||++++++..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3448899999999999999987543
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.06 E-value=0.049 Score=47.16 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.2
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|+||+|||+|+.++.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 401
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.05 E-value=0.034 Score=48.86 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999753
No 402
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.03 E-value=0.04 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.2
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
..-+.|.||+|+|||||+++|++.+.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 34478999999999999999998664
No 403
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.00 E-value=0.05 Score=47.71 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--+++.|++|+|||+|++++.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 404
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.96 E-value=0.056 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|++|+|||+|++++.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998863
No 405
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.93 E-value=0.052 Score=47.46 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|+||+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999763
No 406
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.92 E-value=0.039 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=21.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||||+|||||+++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4578999999999999999997654
No 407
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.92 E-value=0.034 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999998753
No 408
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.91 E-value=0.053 Score=46.83 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999998753
No 409
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.89 E-value=0.038 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
..+.|.|+||+|||||++++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 410
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.88 E-value=0.054 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999998763
No 411
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.86 E-value=0.054 Score=47.43 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-+++.|++|+|||+|+.++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 412
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.85 E-value=0.056 Score=47.53 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=19.0
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-++|.|++|+|||+|++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999988775
No 413
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.84 E-value=0.041 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=19.8
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|+||+|||+|++.+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998863
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.83 E-value=0.054 Score=47.53 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|++++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999763
No 415
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.82 E-value=0.054 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998753
No 416
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.81 E-value=0.046 Score=65.10 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=25.9
Q ss_pred CCCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 242 GKAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 242 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|+++++.++|+||||+|||+|+..+|....
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 377778899999999999999999987653
No 417
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.81 E-value=0.024 Score=55.01 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=23.6
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+...-+.|.||.|+|||||+++|++.+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3445588999999999999999998764
No 418
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.80 E-value=0.046 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-+++.|+||+|||+|++++++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999986
No 419
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.79 E-value=0.051 Score=49.18 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=21.9
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcc
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSV 272 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~ 272 (436)
-.+|+||.|+|||++..||.-.++-
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4679999999999999999877764
No 420
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.79 E-value=0.056 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|++++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999998764
No 421
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.77 E-value=0.05 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--++|.|++|+|||+|+.++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999875
No 422
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.71 E-value=0.057 Score=48.07 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-+++.|+||+|||+|+.++.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999875
No 423
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.70 E-value=0.057 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|++++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998763
No 424
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.70 E-value=0.056 Score=53.27 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHh
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
.-+.|.|+||+||||++.+++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999876
No 425
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.68 E-value=0.05 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999763
No 426
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.68 E-value=0.057 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999763
No 427
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.67 E-value=0.059 Score=47.44 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|+||+|||+|++++.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999998763
No 428
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.66 E-value=0.048 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.4
Q ss_pred eeEeCCCCCChhHHHHHHHHH
Q 013823 249 YLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~ 269 (436)
+|++|++|+|||++|..+|..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999866
No 429
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.64 E-value=0.05 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.9
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-++|.|++|+|||+|++++.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999999864
No 430
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.63 E-value=0.042 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.0
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998653
No 431
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.57 E-value=0.046 Score=47.62 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.1
Q ss_pred cceeeEeCCCCCChhHHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
..-+++.|+||+|||+|++++.+
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999875
No 432
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.52 E-value=0.056 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-++|.|++|+|||+|++++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 45899999999999999999863
No 433
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.50 E-value=0.054 Score=46.88 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-++|.|+||+|||+|+.++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999874
No 434
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.49 E-value=0.043 Score=52.89 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|+|||||+++|++...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3477999999999999999987654
No 435
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.49 E-value=0.071 Score=47.42 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=18.9
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|+||+|||+|++++++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999864
No 436
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.42 E-value=0.055 Score=48.13 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998763
No 437
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.36 E-value=0.041 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=9.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-+++.|+||+|||+|+.++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999875
No 438
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.35 E-value=0.057 Score=47.96 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-++|.|++|+|||+|++++.+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999999886
No 439
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.33 E-value=0.06 Score=48.71 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=21.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+++.|++|+|||+|+..++..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4578889999999999999998753
No 440
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.19 E-value=0.062 Score=47.17 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--+++.|++|+|||+|+.++.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3589999999999999999976
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.18 E-value=0.073 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 442
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.14 E-value=0.055 Score=52.56 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.+|+||.||+|+|||++|.++..
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999988765
No 443
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.12 E-value=0.062 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|++.+++.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 444
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.09 E-value=0.071 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-++|.|+||+||||+++.++..++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhh
Confidence 4478899999999999999999876
No 445
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.08 E-value=0.055 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=20.0
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+.|.||.|+||||+++.|++.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3678999999999999999987
No 446
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.06 E-value=0.11 Score=51.39 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+.|.|+||+|||||.+++++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3779999999999999999864
No 447
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.06 E-value=0.071 Score=46.11 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.4
Q ss_pred cceeeEeCCCCCChhHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMA 267 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA 267 (436)
..-+++.|+||+|||+|+.++.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4569999999999999998876
No 448
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.02 E-value=0.086 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+++.||||||||+|++.||+..+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHh
Confidence 4489999999999999999998764
No 449
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.98 E-value=0.084 Score=46.76 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-++|.|+||+|||+|+..+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998864
No 450
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.96 E-value=0.067 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-++|.|++|+|||+|++++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998763
No 451
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.92 E-value=0.062 Score=46.98 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.4
Q ss_pred cceeeEeCCCCCChhHHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
..-+++.|++|+|||+|++++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
No 452
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.88 E-value=0.074 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||+|+|||||+++|+ .+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 457899999999999999999 554
No 453
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.87 E-value=0.07 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--+++.|++|+|||+|+.++.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998753
No 454
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.83 E-value=0.064 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.0
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|+||+|||+|++++++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998753
No 455
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.82 E-value=0.071 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--++|.|++|+|||+|++++.+
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 456
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.81 E-value=0.087 Score=51.63 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.7
Q ss_pred cceeeEeCCCCCChhHHHHHHHHHh
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~l 270 (436)
..-+.+.||||+||||++.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999999876
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.81 E-value=0.079 Score=55.39 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=23.0
Q ss_pred CcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 245 WKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 245 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
...-+.|.||.|+|||||+++|++.+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334588999999999999999998764
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.73 E-value=0.076 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|++++.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 459
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.72 E-value=0.075 Score=47.44 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=19.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-+++.|++|+|||+|+.++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 3589999999999999999886
No 460
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.70 E-value=0.073 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.8
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+.|.|+||+|||+|.+++++.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999864
No 461
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.70 E-value=0.058 Score=46.97 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=19.8
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|++++.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.69 E-value=0.1 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.5
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+.|.||.|+|||||.++|++.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 5677999999999999999999875
No 463
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.65 E-value=0.064 Score=47.71 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--+++.|++|+|||+|++++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999999874
No 464
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.64 E-value=0.077 Score=49.87 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-++|.|+||+|||+|+.++.+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3488999999999999999976
No 465
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.56 E-value=0.07 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.1
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-++|.|++|+|||+|+.++.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998753
No 466
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.55 E-value=0.079 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.9
Q ss_pred cceeeEeCCCCCChhHHHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.+|+||.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 478999999999999999999874
No 467
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.48 E-value=0.073 Score=47.29 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.7
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-++|.|+||+|||+|++.+++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998754
No 468
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.46 E-value=0.082 Score=46.95 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998863
No 469
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.45 E-value=0.097 Score=47.36 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--++|.|++|+|||+|+.++.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999998763
No 470
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.44 E-value=0.081 Score=46.73 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.3
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--+++.|+||+|||+|+.++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999998853
No 471
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.44 E-value=0.089 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.0
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-+++.|++|+|||+|++++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999864
No 472
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.44 E-value=0.084 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.0
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-++|.|++|+|||+|+..+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35899999999999999998753
No 473
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.42 E-value=0.11 Score=47.20 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.0
Q ss_pred eeEeCCCCCChhHHHHHHHHHhc
Q 013823 249 YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|.|-|+.|+||||.++.++..+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 66889999999999999999884
No 474
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.41 E-value=0.093 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=19.4
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-++|.|++|+|||+|+.++.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999998864
No 475
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.36 E-value=0.14 Score=46.29 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=34.9
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhHHHHHHhC---CCCcceeeEeCCCCCChhHH-HHHHHHHh
Q 013823 209 STFDTLAMDPELKQMILDDLDRFLRRKEFYRRVG---KAWKRGYLLYGPPGTGKSSL-IAAMANYL 270 (436)
Q Consensus 209 ~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g---~~~~rg~LL~GPpGtGKT~l-a~aiA~~l 270 (436)
.+|+++...+.+.+.+.+.- ...+..++... +-..+.+++.+|+|+|||.. +-.+...+
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999988888887775421 11111111111 01235799999999999976 33444433
No 476
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.30 E-value=0.11 Score=48.17 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=21.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
.-+++.|.+|+||||++..+|..+.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3477899999999999999998764
No 477
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.24 E-value=0.075 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.6
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--+++.|++|+|||+|+.++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 478
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.18 E-value=0.085 Score=49.52 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.7
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-++|.|+||+|||||..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999764
No 479
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.15 E-value=0.092 Score=46.86 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=19.6
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|+||+|||+|+..+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998753
No 480
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.10 E-value=0.095 Score=55.24 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 244 AWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 244 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
+++.-+.|.||.|+|||||++.+++.+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445588999999999999999998764
No 481
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.09 E-value=0.053 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.5
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|++++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998654
No 482
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.09 E-value=0.081 Score=47.03 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCcceeeEeCCCCCChhHHH
Q 013823 210 TFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLI 263 (436)
Q Consensus 210 ~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rg~LL~GPpGtGKT~la 263 (436)
+|+++...+++.+.+.+.- ...+..++...+ -..+.+++.+|+|+|||..+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRG---LTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred ChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHH
Confidence 4677767776666654410 111111111110 11367999999999999863
No 483
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.08 E-value=0.11 Score=46.80 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.4
Q ss_pred eeeEeCCCCCChhHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~ 268 (436)
-++|.|++|+|||+|+..+.+
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999999876
No 484
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.99 E-value=0.067 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.1
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
.++|.||+|+|||||+++|++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999998864
No 485
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.98 E-value=0.11 Score=51.35 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=20.1
Q ss_pred eeeEeCCCCCChhHHHHHHHHHh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l 270 (436)
-.+|+||.|+||||+..||+-.+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999654
No 486
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.96 E-value=0.084 Score=53.44 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.0
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
+.|.||+|+|||||++++++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6899999999999999998754
No 487
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.94 E-value=0.099 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.7
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
--+++.|++|+|||+|+.++.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999998875
No 488
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.94 E-value=0.052 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=4.3
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+++.|++|+|||+|+.++.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 489
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.92 E-value=0.12 Score=47.22 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.4
Q ss_pred eeeEeCCCCCChhHHHHHHHHHhcchh
Q 013823 248 GYLLYGPPGTGKSSLIAAMANYLSVEM 274 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~l~~~~ 274 (436)
.+-|+|.+|||||++++.++. +|+++
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~v 36 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASL 36 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcE
Confidence 467999999999999999998 88443
No 490
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=90.91 E-value=0.2 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.6
Q ss_pred cceeeEeCCCCCChhHHHHHHHHH
Q 013823 246 KRGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 246 ~rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
..-+++.|+||+|||||++++++.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999998764
No 491
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.89 E-value=0.2 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.5
Q ss_pred eeEeCCCCCChhHHHHHHHHHh
Q 013823 249 YLLYGPPGTGKSSLIAAMANYL 270 (436)
Q Consensus 249 ~LL~GPpGtGKT~la~aiA~~l 270 (436)
+.|.||+|+|||||.++|++.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8899999999999999999865
No 492
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.78 E-value=0.11 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.2
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
.-++|.|+||+|||+|+.+|.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 45899999999999999998753
No 493
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.73 E-value=0.11 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.8
Q ss_pred eeeEeCCCCCChhHHHHHHHHH
Q 013823 248 GYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 248 g~LL~GPpGtGKT~la~aiA~~ 269 (436)
-+.|.|+||+|||||++++.+.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3789999999999999999875
No 494
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.59 E-value=0.11 Score=46.93 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=34.5
Q ss_pred CCCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCcceeeEeCCCCCChhHHHHHHHH
Q 013823 206 EHPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 206 ~~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.+..+|+++...+++.+.+.+.- +..+..++...+ -..+.+++.+|+|+|||..+-..+-
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 34457899988888888775521 111111221111 1135699999999999986654443
No 495
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.49 E-value=0.099 Score=46.22 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.8
Q ss_pred ceeeEeCCCCCChhHHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~~ 269 (436)
--++|.|++|+|||+|++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34999999999999999987664
No 496
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.49 E-value=0.11 Score=55.04 Aligned_cols=29 Identities=21% Similarity=0.461 Sum_probs=24.2
Q ss_pred CCCcceeeEeCCCCCChhHHHHHHHHHhc
Q 013823 243 KAWKRGYLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 243 ~~~~rg~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
++++.-+.+.||+|+|||||+++|++.+.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 34455688999999999999999998764
No 497
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.43 E-value=0.12 Score=49.71 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.4
Q ss_pred Ccce-eeEeCCCCCChhHHHHHHHHH
Q 013823 245 WKRG-YLLYGPPGTGKSSLIAAMANY 269 (436)
Q Consensus 245 ~~rg-~LL~GPpGtGKT~la~aiA~~ 269 (436)
++.| +.+.|+||+|||||+.++.+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3344 779999999999999998753
No 498
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.43 E-value=0.13 Score=51.54 Aligned_cols=28 Identities=25% Similarity=0.584 Sum_probs=23.0
Q ss_pred CCcce--eeEeCCCCCChhHHHHHHHHHhc
Q 013823 244 AWKRG--YLLYGPPGTGKSSLIAAMANYLS 271 (436)
Q Consensus 244 ~~~rg--~LL~GPpGtGKT~la~aiA~~l~ 271 (436)
|..+| .++.||||||||+|+..||+...
T Consensus 171 PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 34444 89999999999999999998653
No 499
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.42 E-value=0.26 Score=46.27 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred ceeeEeCCCCCChhHHHHHHHH
Q 013823 247 RGYLLYGPPGTGKSSLIAAMAN 268 (436)
Q Consensus 247 rg~LL~GPpGtGKT~la~aiA~ 268 (436)
.-+++.|++|+|||+|+.++.+
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999985
No 500
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.40 E-value=0.082 Score=48.58 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=32.9
Q ss_pred CCCCCcccccChhHHHHHHHHHHHHHhhHHHHHHhCC---CCcceeeEeCCCCCChhHHH
Q 013823 207 HPSTFDTLAMDPELKQMILDDLDRFLRRKEFYRRVGK---AWKRGYLLYGPPGTGKSSLI 263 (436)
Q Consensus 207 ~~~~~~~i~g~~~~k~~i~~~l~~~l~~~~~~~~~g~---~~~rg~LL~GPpGtGKT~la 263 (436)
...+|+++...+.+.+.+.+.- +..+..++...+ -..+.+++.+|+|+|||..+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYG---FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 3467999988888887765421 111111221111 11356999999999999764
Done!