BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013824
         (436 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast
           Mg2+ Channel Mrs2
          Length = 261

 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 28/256 (10%)

Query: 113 VVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGS 172
           V   K N +  + K  +   L    L PRD+R ID S    + +P+++ + + I++NL  
Sbjct: 21  VFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSI--DIIPTIMCKPNCIVINLLH 78

Query: 173 LRAITMQERVFIFDYNRKGGQAFIDTXXXXXXXXXXXGSPCMPFMIE-AVEAALLSRVQR 231
           ++A+  +++V++FD       A +                   F    A+E+  ++ +  
Sbjct: 79  IKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSSTKNNSQFYEHRALESIFINVMSA 138

Query: 232 LEQRL-MHIEPRVQGL--LEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLE 288
           LE    +H +  +Q L  LE   NRL    L  L I  + L     +   +R +L +LLE
Sbjct: 139 LETDFKLHSQICIQILNDLENEVNRLK---LRHLLIKSKDLTLFYQKTLLIRDLLDELLE 195

Query: 289 DPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAXXXXXXXXXXXXNYLQRCESCHGQS 348
           +  ++  + +  K       +D       LE  I              Y  +C+    QS
Sbjct: 196 NDDDLANMYLTVKKSPKDNFSD-------LEMLIET------------YYTQCDEYVQQS 236

Query: 349 ERLLDSAKEMEDSIAV 364
           E L+   K  E+ + +
Sbjct: 237 ESLIQDIKSTEEIVNI 252


>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
           Blueprint For Antibiotic Engineering
 pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
           Blueprint For Antibiotic Engineering
          Length = 430

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 255 TADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRI----CIMGKNCTLRRGND 310
            AD+L+ L ++++   E ++ A  LR+  L L++DP   RR+      M +    RR  D
Sbjct: 334 NADMLQGLGVARKLATEEAT-ADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAAD 392

Query: 311 DVECSVP 317
            +E  +P
Sbjct: 393 LIEAELP 399


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,549,939
Number of Sequences: 62578
Number of extensions: 310210
Number of successful extensions: 768
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 4
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)