Query 013824
Match_columns 436
No_of_seqs 253 out of 1522
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:45:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 2.3E-68 5E-73 532.0 34.9 323 106-432 60-404 (414)
2 COG0598 CorA Mg2+ and Co2+ tra 100.0 2.7E-34 5.8E-39 289.3 30.2 273 109-432 31-318 (322)
3 TIGR00383 corA magnesium Mg(2+ 100.0 8.6E-33 1.9E-37 277.0 30.1 276 107-431 23-313 (318)
4 PRK09546 zntB zinc transporter 100.0 6.6E-31 1.4E-35 264.7 31.3 266 109-431 35-319 (324)
5 PF01544 CorA: CorA-like Mg2+ 100.0 5.9E-30 1.3E-34 251.2 25.5 271 109-430 2-290 (292)
6 PRK11085 magnesium/nickel/coba 100.0 1.2E-27 2.5E-32 239.8 29.0 268 109-432 24-312 (316)
7 PRK11085 magnesium/nickel/coba 96.7 0.51 1.1E-05 47.9 22.6 70 355-428 241-311 (316)
8 PRK09546 zntB zinc transporter 95.3 0.86 1.9E-05 46.1 16.3 172 214-428 143-319 (324)
9 COG0598 CorA Mg2+ and Co2+ tra 95.0 1.4 2.9E-05 44.8 16.9 174 211-427 137-316 (322)
10 TIGR00383 corA magnesium Mg(2+ 92.9 5.4 0.00012 39.9 16.4 68 211-281 132-203 (318)
11 PF01544 CorA: CorA-like Mg2+ 90.9 9.1 0.0002 37.2 15.1 169 214-424 111-287 (292)
12 PF10267 Tmemb_cc2: Predicted 86.3 47 0.001 34.9 18.6 67 341-412 300-375 (395)
13 KOG1853 LIS1-interacting prote 79.7 64 0.0014 31.9 13.8 74 220-293 45-124 (333)
14 PF07332 DUF1469: Protein of u 78.1 18 0.0004 30.8 9.0 81 349-430 10-93 (121)
15 PF10805 DUF2730: Protein of u 77.5 9.7 0.00021 32.4 6.9 60 230-289 38-101 (106)
16 PF05478 Prominin: Prominin; 71.5 2E+02 0.0042 33.2 17.4 21 386-406 429-449 (806)
17 TIGR02230 ATPase_gene1 F0F1-AT 69.0 12 0.00026 31.7 5.3 48 379-429 44-91 (100)
18 PF10856 DUF2678: Protein of u 64.0 6.4 0.00014 34.1 2.8 53 377-432 31-83 (118)
19 PF11026 DUF2721: Protein of u 55.7 1.4E+02 0.0031 26.1 10.2 71 332-402 14-94 (130)
20 PF05360 YiaAB: yiaA/B two hel 53.8 40 0.00086 25.1 5.2 44 380-427 4-47 (53)
21 PF06196 DUF997: Protein of un 51.3 76 0.0016 25.7 6.9 27 378-404 7-33 (80)
22 PF06609 TRI12: Fungal trichot 51.0 49 0.0011 36.8 7.5 62 364-431 156-217 (599)
23 PF01442 Apolipoprotein: Apoli 49.5 1.9E+02 0.0041 25.7 12.6 113 225-373 3-116 (202)
24 PF07798 DUF1640: Protein of u 48.8 2.2E+02 0.0048 26.2 18.0 30 363-397 144-173 (177)
25 PF04011 LemA: LemA family; I 47.3 2.3E+02 0.005 26.1 15.5 18 388-405 155-172 (186)
26 PF06127 DUF962: Protein of un 46.7 1.1E+02 0.0024 25.3 7.4 20 357-376 3-22 (95)
27 COG3462 Predicted membrane pro 46.7 91 0.002 26.9 6.8 49 379-428 12-65 (117)
28 PF06570 DUF1129: Protein of u 46.3 83 0.0018 29.7 7.5 11 387-397 90-100 (206)
29 PRK13182 racA polar chromosome 45.6 68 0.0015 29.9 6.6 59 229-287 87-145 (175)
30 PF13042 DUF3902: Protein of u 45.0 52 0.0011 29.9 5.4 66 361-429 52-118 (161)
31 KOG3850 Predicted membrane pro 43.0 4.3E+02 0.0092 27.9 18.7 18 131-148 102-119 (455)
32 PF04341 DUF485: Protein of un 41.4 2E+02 0.0043 23.6 8.8 24 407-430 51-74 (91)
33 PF06210 DUF1003: Protein of u 40.6 51 0.0011 28.2 4.6 32 382-413 3-36 (108)
34 PRK13682 hypothetical protein; 39.9 97 0.0021 23.1 5.2 17 383-399 4-20 (51)
35 COG5130 YIP3 Prenylated rab ac 38.6 1E+02 0.0023 27.8 6.2 17 385-401 83-99 (169)
36 TIGR02132 phaR_Bmeg polyhydrox 37.4 1.3E+02 0.0028 28.2 6.9 30 259-288 106-135 (189)
37 PF15110 TMEM141: TMEM141 prot 36.8 43 0.00094 28.0 3.3 42 389-430 32-76 (94)
38 PF11177 DUF2964: Protein of u 36.7 1E+02 0.0022 24.0 5.1 36 379-415 9-44 (62)
39 COG1422 Predicted membrane pro 36.1 3.9E+02 0.0086 25.5 10.6 26 367-392 111-136 (201)
40 COG5487 Small integral membran 36.0 1.5E+02 0.0033 22.1 5.6 17 383-399 4-20 (54)
41 PF08113 CoxIIa: Cytochrome c 35.8 89 0.0019 21.2 4.0 25 405-429 1-25 (34)
42 PF11286 DUF3087: Protein of u 35.7 1E+02 0.0022 28.5 6.0 19 380-398 24-42 (165)
43 PF07086 DUF1352: Protein of u 35.5 23 0.00051 33.3 1.8 36 363-399 87-122 (186)
44 PF03302 VSP: Giardia variant- 34.7 22 0.00048 37.3 1.7 22 415-436 374-395 (397)
45 PF04129 Vps52: Vps52 / Sac2 f 33.9 2.1E+02 0.0046 31.0 9.1 69 327-402 30-98 (508)
46 PF04012 PspA_IM30: PspA/IM30 32.9 4.2E+02 0.0092 24.9 13.5 37 263-299 54-91 (221)
47 PF06703 SPC25: Microsomal sig 32.5 1.8E+02 0.0039 26.2 7.2 26 379-409 31-56 (162)
48 KOG3091 Nuclear pore complex, 32.5 6.6E+02 0.014 27.3 12.0 31 253-283 369-399 (508)
49 PRK06926 flagellar motor prote 29.5 59 0.0013 32.5 3.6 45 380-426 7-55 (271)
50 KOG4343 bZIP transcription fac 29.1 1.7E+02 0.0037 32.0 7.1 73 329-406 306-383 (655)
51 COG1916 Uncharacterized homolo 28.6 98 0.0021 32.2 5.1 33 369-401 354-386 (388)
52 PRK15348 type III secretion sy 28.5 62 0.0014 31.9 3.6 38 383-420 187-231 (249)
53 PF11026 DUF2721: Protein of u 28.1 3.2E+02 0.0069 23.9 7.7 57 224-284 11-67 (130)
54 TIGR01598 holin_phiLC3 holin, 27.6 36 0.00078 27.6 1.4 24 379-402 13-36 (78)
55 PF06770 Arif-1: Actin-rearran 27.4 1.4E+02 0.0031 28.4 5.5 20 380-399 40-59 (196)
56 COG1196 Smc Chromosome segrega 27.2 1.2E+03 0.025 28.2 16.2 6 393-398 514-519 (1163)
57 TIGR03647 Na_symport_sm probab 27.2 2.7E+02 0.0058 22.5 6.4 24 405-428 37-60 (77)
58 COG2733 Predicted membrane pro 26.4 2.1E+02 0.0045 30.2 7.0 57 368-432 2-60 (415)
59 PF08317 Spc7: Spc7 kinetochor 26.1 7E+02 0.015 25.2 14.1 12 131-142 18-29 (325)
60 PF12263 DUF3611: Protein of u 25.9 2.6E+02 0.0056 26.3 7.0 51 379-432 27-79 (183)
61 PF07889 DUF1664: Protein of u 25.8 3E+02 0.0065 24.3 7.0 62 225-286 52-115 (126)
62 PF03904 DUF334: Domain of unk 25.6 6.4E+02 0.014 24.6 16.8 16 379-394 153-168 (230)
63 PRK14584 hmsS hemin storage sy 24.7 2.7E+02 0.0058 25.5 6.6 27 376-403 17-43 (153)
64 PF13829 DUF4191: Domain of un 24.6 2.1E+02 0.0045 27.9 6.2 19 409-427 51-69 (224)
65 PF05461 ApoL: Apolipoprotein 24.5 7.6E+02 0.016 25.1 10.9 13 276-288 31-43 (313)
66 PF02388 FemAB: FemAB family; 24.4 2.8E+02 0.0061 29.1 7.8 57 227-285 242-298 (406)
67 PRK08124 flagellar motor prote 23.7 1E+02 0.0022 30.5 4.2 45 380-426 4-50 (263)
68 PF01031 Dynamin_M: Dynamin ce 23.6 1.2E+02 0.0025 30.2 4.6 91 198-290 173-269 (295)
69 KOG0250 DNA repair protein RAD 22.8 1.3E+03 0.028 27.7 13.0 29 258-286 363-391 (1074)
70 PF04136 Sec34: Sec34-like fam 22.7 5.8E+02 0.012 23.1 12.9 27 262-288 30-56 (157)
71 PF10267 Tmemb_cc2: Predicted 22.6 6.7E+02 0.015 26.5 10.0 13 365-377 306-318 (395)
72 PF13273 DUF4064: Protein of u 22.3 1.8E+02 0.0039 23.9 4.8 27 376-402 4-30 (100)
73 PF04102 SlyX: SlyX; InterPro 22.0 1.5E+02 0.0032 23.1 4.0 25 262-286 27-51 (69)
74 cd07912 Tweety_N N-terminal do 21.9 9.8E+02 0.021 25.5 15.3 33 380-417 211-243 (418)
75 PF03268 DUF267: Caenorhabditi 21.7 6.7E+02 0.015 26.1 9.6 57 366-424 210-273 (353)
76 PF10779 XhlA: Haemolysin XhlA 21.6 3.9E+02 0.0085 20.7 8.2 6 390-395 59-64 (71)
77 PRK09109 motC flagellar motor 21.5 1.2E+02 0.0026 29.6 4.1 45 380-426 4-50 (246)
78 PF13937 DUF4212: Domain of un 21.4 4.5E+02 0.0097 21.4 6.8 22 405-426 41-62 (81)
79 PF11947 DUF3464: Protein of u 21.4 2.9E+02 0.0063 25.3 6.2 55 370-425 58-112 (153)
80 PF11395 DUF2873: Protein of u 21.4 1.7E+02 0.0037 20.4 3.5 25 411-435 8-33 (43)
81 PF10272 Tmpp129: Putative tra 21.3 1E+02 0.0022 32.1 3.7 24 379-402 38-61 (358)
82 PRK03557 zinc transporter ZitB 21.2 1E+02 0.0022 31.1 3.7 6 407-412 78-83 (312)
83 PF04226 Transgly_assoc: Trans 21.2 2E+02 0.0043 20.8 4.2 11 389-399 10-20 (48)
84 PF14584 DUF4446: Protein of u 20.8 6.1E+02 0.013 23.0 8.2 34 329-362 43-76 (151)
85 PF11368 DUF3169: Protein of u 20.6 3.1E+02 0.0068 26.5 6.8 7 370-376 5-11 (248)
86 PF01102 Glycophorin_A: Glycop 20.6 1.3E+02 0.0028 26.5 3.6 25 409-433 64-88 (122)
87 PRK04406 hypothetical protein; 20.6 2.5E+02 0.0055 22.4 5.0 25 262-286 34-58 (75)
88 TIGR01834 PHA_synth_III_E poly 20.3 3.9E+02 0.0084 27.4 7.5 27 261-287 290-316 (320)
89 PF12805 FUSC-like: FUSC-like 20.3 1.4E+02 0.0029 29.6 4.3 18 386-403 49-66 (284)
90 PRK11546 zraP zinc resistance 20.3 4.3E+02 0.0094 23.9 7.0 68 214-285 44-114 (143)
91 TIGR00261 traB pheromone shutd 20.2 95 0.0021 32.5 3.2 27 369-395 346-372 (380)
92 PF11712 Vma12: Endoplasmic re 20.1 6.1E+02 0.013 22.4 8.2 10 391-400 92-101 (142)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-68 Score=531.98 Aligned_cols=323 Identities=32% Similarity=0.465 Sum_probs=285.6
Q ss_pred ccCceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEEeecccceeeeecCeEEEE
Q 013824 106 IREPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIF 185 (436)
Q Consensus 106 ~~~~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Ilvnle~IraII~~d~Vllf 185 (436)
...+...|++||..|+++..+++|++|+++.||+|||||.+||++ .+.++|+.|+++|++|+|+|||||++++|++|
T Consensus 60 ~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~---~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~ 136 (414)
T KOG2662|consen 60 SGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSL---SYPSSILGRENAIVLNLEHIKAIITADEVLLL 136 (414)
T ss_pred cCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccc---cCccccccccceEEeehhhhheeeehhheeEe
Confidence 344677999999999999999999999999999999999999986 25556999999999999999999999999999
Q ss_pred ecCCCCccchHhhhhhhhCCCC--------CCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccc
Q 013824 186 DYNRKGGQAFIDTLLPRLNPRN--------LNG--SPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLT 255 (436)
Q Consensus 186 ~~~~~~~~~fl~~L~~RL~~~~--------~~~--~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~ 255 (436)
+..++ +.++.+++++|+.... +.+ .+.+||||+|||++|..+|..|++++.++|..+.++||+|+.+++
T Consensus 137 d~~~~-v~~~~~el~~~l~~~~~~~~~q~s~~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is 215 (414)
T KOG2662|consen 137 DSLDP-VIPYNEELQRRLPVELESRGNQLSSDGGSKDELPFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKIS 215 (414)
T ss_pred ccccc-cchHHHHHHHHhcccccccccccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 98665 5688888888875432 222 379999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhcccccccc------------CCCCCCCcCcchhhhhh
Q 013824 256 ADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLR------------RGNDDVECSVPLEKQIA 323 (436)
Q Consensus 256 ~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~------------~~~~~~~~~~~~~~~~~ 323 (436)
+++|++++.+|++|+.|.++++.+||+|++||+||+||++||||+|+.... .+.....+..++..-..
T Consensus 216 ~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~ 295 (414)
T KOG2662|consen 216 TLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRG 295 (414)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccc
Confidence 999999999999999999999999999999999999999999999842111 11111111111221112
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCC
Q 013824 324 EEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKS 403 (436)
Q Consensus 324 ~~~~eevE~LLE~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~ 403 (436)
.+++||+|||||+||+|+|++.+++++++++|++|||+++++||++||++|+++++||++|++++++++|||+||||+++
T Consensus 296 ~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~ 375 (414)
T KOG2662|consen 296 EDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPS 375 (414)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 013824 404 YLEEHVFAFWLTTAGIIVGAVMAFLPHVL 432 (436)
Q Consensus 404 ~~Ee~~~gF~~v~~~mv~~~v~~~~~~~~ 432 (436)
++|+.+|+||+|+++++++|+++|...+.
T Consensus 376 ~l~~~~~~F~~vv~~~~~~~~~lf~~i~~ 404 (414)
T KOG2662|consen 376 SLEEDHYAFKWVVGITFTLCIVLFVVILG 404 (414)
T ss_pred hhccCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887553
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-34 Score=289.31 Aligned_cols=273 Identities=19% Similarity=0.216 Sum_probs=224.7
Q ss_pred ceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEE--e------------ecccce
Q 013824 109 PVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAIL--L------------NLGSLR 174 (436)
Q Consensus 109 ~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Il--v------------nle~Ir 174 (436)
+.+-|+++.+-+.... + .+.+.||||+..++++.. .+++|++...++... + .++++.
T Consensus 31 ~~~~Widl~~p~~~e~-~----~l~~~~~l~~~~~ed~~~----~~~r~r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~ 101 (322)
T COG0598 31 DGFVWIDLVEPDDEEL-E----WLAKTFGLHPLALEDLLD----AEQRPKVERYDDYLFIVLRDVNLEEEEDKAETEPVS 101 (322)
T ss_pred CCeEEEECCCCCHHHH-H----HHHHhcCCCcchHHHHhC----cccCCceEeeCCEEEEEEEeeccccccccccceeEE
Confidence 4488999988777554 4 799999999999999887 579999998887422 1 266789
Q ss_pred eeeecCeEEEEecCCCCccchHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCcc
Q 013824 175 AITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRL 254 (436)
Q Consensus 175 aII~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v 254 (436)
.+++++.+++++..+ .+.++.++.|+..... ...-+.+ ++..+++.+++.|...++.++++++.+++.+....
T Consensus 102 ~i~~~~~liT~r~~~---~~~~~~vr~r~~~~~~--~~~~~~~--l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~ 174 (322)
T COG0598 102 IIVGKRRLITIRHRP---LPAFDRVRERLEKGTL--LTRGADE--LLYALLDAIVDNYFPVLEQIEDELEAIEDQLLAST 174 (322)
T ss_pred EEEeCCEEEEEecCC---CccHHHHHHHHhcccc--ccCCHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999854 4778899999876422 1111333 66677777777888888889999999999998888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHHH
Q 013824 255 TADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLL 334 (436)
Q Consensus 255 ~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~LL 334 (436)
.++.+++|..+++.+..+++.++++++++..+.+...+.. .++....+
T Consensus 175 ~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~--------------------------------~~~~~~~l 222 (322)
T COG0598 175 TNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWL--------------------------------SEEDREYL 222 (322)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccC--------------------------------CHHHHHHH
Confidence 8899999999999999999999999999999998754320 02333333
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCC-CCchHHH
Q 013824 335 ENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLE-EHVFAFW 413 (436)
Q Consensus 335 E~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~E-e~~~gF~ 413 (436)
+.-..++..+.+.++.+++.++.+.|.+...+++++|++||. ||++|++|+|+|||||+|||||++||| +|+||||
T Consensus 223 ~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~---LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~ 299 (322)
T COG0598 223 RDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKI---LTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYP 299 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHH
Confidence 344445556667778889999999999999999999999995 999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013824 414 LTTAGIIVGAVMAFLPHVL 432 (436)
Q Consensus 414 ~v~~~mv~~~v~~~~~~~~ 432 (436)
+++++|++.|+++|++|..
T Consensus 300 ~~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 300 IALILMLLLALLLYLYFRR 318 (322)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=8.6e-33 Score=276.98 Aligned_cols=276 Identities=16% Similarity=0.135 Sum_probs=218.2
Q ss_pred cCceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEE-------------eecccc
Q 013824 107 REPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAIL-------------LNLGSL 173 (436)
Q Consensus 107 ~~~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Il-------------vnle~I 173 (436)
....+.|+.+.+-.+.+.++ .+++.||+|+.+++++.. .+++|++...++... +...++
T Consensus 23 ~~~~~~Widl~~p~~~e~~~----~l~~~~~l~~~~~ed~~~----~~~~~k~e~~~~~~~i~~~~~~~~~~~~~~~~~l 94 (318)
T TIGR00383 23 ELNTVLWIDLIEPTDEETLA----KLGQFFAIHPLALEDILN----SPQRPKVEEDEDHLFIISFFLNEDEDDTFETEQV 94 (318)
T ss_pred CCCceEEEEccCCCcHHHHH----HHHHHcCcCcchHHHhhC----CCCCCcEEEECCEEEEEEEeeeccCCCcceeEEE
Confidence 44778899977766544234 799999999999999977 468999987776533 234678
Q ss_pred eeeeecCeEEEEecCCCCccchHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCc
Q 013824 174 RAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNR 253 (436)
Q Consensus 174 raII~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~ 253 (436)
..+++++.++++...+ ...++.+++|+........ .-|. .++..+++.+++.+...++.++++++.+++++.+.
T Consensus 95 ~~~l~~~~liTv~~~~---~~~~~~~~~~~~~~~~~~~-~~~~--~ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~ 168 (318)
T TIGR00383 95 SFILGKNLLFTIHERE---LPAFDSIRERIRTSQKVFE-KGAD--YLLYDIFDAIIDSYFPLLENIEDELEELEDEIISG 168 (318)
T ss_pred EEEEECCEEEEEEcCC---CCcHHHHHHHHHhCchhhh-CCHH--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999998765 3667888887764331111 1133 37778888888888888889999999998888777
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHH
Q 013824 254 LTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPH-EIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEM 332 (436)
Q Consensus 254 v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~-dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~ 332 (436)
...+.+.+++.+|+++..+++.+.+.+++++.+.+.+. ... .++...
T Consensus 169 ~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~--------------------------------~~~~~~ 216 (318)
T TIGR00383 169 PTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQ--------------------------------TEEVRE 216 (318)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--------------------------------CHHHHH
Confidence 77788999999999999999999999999999976532 110 012221
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCC-CCchH
Q 013824 333 LLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLE-EHVFA 411 (436)
Q Consensus 333 LLE~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~E-e~~~g 411 (436)
.++.-..+++.+.+.++.+++.++.+.|.+....++++|++||+ ||++|++|+|+|||||+|||||++||| +|+||
T Consensus 217 ~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~---LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~g 293 (318)
T TIGR00383 217 YLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKI---LTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYG 293 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCcccCccccchhH
Confidence 22222334566677788889999999999999999999999995 999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013824 412 FWLTTAGIIVGAVMAFLPHV 431 (436)
Q Consensus 412 F~~v~~~mv~~~v~~~~~~~ 431 (436)
||+++++|++.++++|++|-
T Consensus 294 y~~~l~~m~~i~~~~~~~fk 313 (318)
T TIGR00383 294 YPAVLIVMAVIALGPLIYFR 313 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888774
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=6.6e-31 Score=264.74 Aligned_cols=266 Identities=11% Similarity=0.086 Sum_probs=201.2
Q ss_pred ceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEEee--------------cccce
Q 013824 109 PVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLN--------------LGSLR 174 (436)
Q Consensus 109 ~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Ilvn--------------le~Ir 174 (436)
..+.|+.++...... .+ .|.+ ++.+|..+++-... .+++|++...++.+++. +.++.
T Consensus 35 ~~~~Wi~l~~~~~~e-~~----~L~~-~~~~~~~~~d~l~~---~~~rpk~e~~~~~~~iil~~~~~~~~~~~~~~~~l~ 105 (324)
T PRK09546 35 AHPCWLHLDYTHPDS-AQ----WLAT-TPLLPDNVRDALAG---ESTRPRVSRLGEGTLITLRCINGNTDERPDQLVAMR 105 (324)
T ss_pred CCCEEEEeCCCChhH-HH----HHHh-cCCCCHHHHHHHhC---CCCCCcEEEECCEEEEEEEeccCCCCCChhheEEEE
Confidence 456799886543322 22 5554 57778887776542 35899998887764421 23378
Q ss_pred eeeecCeEEEEecCCCCccchHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCcc
Q 013824 175 AITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRL 254 (436)
Q Consensus 175 aII~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v 254 (436)
.++++|.++++...+ ...++.+++++..+.. .. -|.+ ++..+++.+++.+...++.++++++++++.+.+..
T Consensus 106 ~~l~~~~lITv~~~~---~~~~~~~~~~~~~~~~--~~-~~~~--ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~ 177 (324)
T PRK09546 106 VYITDRLIVSTRHRK---VLALDDVVSDLQEGTG--PT-DCGG--WLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQ 177 (324)
T ss_pred EEEeCCEEEEEecCC---cccHHHHHHHHHhCCC--CC-CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998765 3778888888865432 11 1333 66788888888888888889999888888775442
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHHH
Q 013824 255 TADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLL 334 (436)
Q Consensus 255 ~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~LL 334 (436)
.. ..++|+.+|+++.++++.+.|+++++.+|.+.+... ++ ++..
T Consensus 178 ~~-~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~----~~----------------------------~~~~--- 221 (324)
T PRK09546 178 IP-PRGELALLRKQLIVMRRYMAPQRDVFARLASERLPW----MS----------------------------DDDR--- 221 (324)
T ss_pred Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cC----------------------------hHHH---
Confidence 22 357999999999999999999999999998653221 00 1111
Q ss_pred HHHHHHH-H---HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCC-CCc
Q 013824 335 ENYLQRC-E---SCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLE-EHV 409 (436)
Q Consensus 335 E~Y~r~v-d---~i~~~le~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~E-e~~ 409 (436)
.|++++ + .+.+.++.+++.++.+.|.+...+++++|++||+ ||++|++|+|+|||||+|||||++||| +|+
T Consensus 222 -~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~~---Ltilt~IflPlT~IaGiyGMNf~~mPel~~~ 297 (324)
T PRK09546 222 -RRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTYT---MSLMAMVFLPTTFLTGLFGVNLGGIPGGGWP 297 (324)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhccccCCCCCcCCc
Confidence 345544 3 3345566777778888899999999999999995 999999999999999999999999999 999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 013824 410 FAFWLTTAGIIVGAVMAFLPHV 431 (436)
Q Consensus 410 ~gF~~v~~~mv~~~v~~~~~~~ 431 (436)
||||+++++|++++++++++|-
T Consensus 298 ~gy~~~l~im~~i~~~~~~~fk 319 (324)
T PRK09546 298 FGFSIFCLLLVVLIGGVAWWLK 319 (324)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888765
No 5
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.97 E-value=5.9e-30 Score=251.16 Aligned_cols=271 Identities=23% Similarity=0.307 Sum_probs=211.5
Q ss_pred ceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEEe--------------ecccce
Q 013824 109 PVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILL--------------NLGSLR 174 (436)
Q Consensus 109 ~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Ilv--------------nle~Ir 174 (436)
..+.|+.+.+..+.. .+ .|.+.||+|+..++++.. .+++|++...++.+++ ...++.
T Consensus 2 ~~~~Wi~~~~~~~~~-~~----~l~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 72 (292)
T PF01544_consen 2 DGFVWIDLSGPDDEE-LE----WLAEEFGLHPLTIEDALD----PEERPRIEVFDDYLFIVLRAPEYEEEDDIDEESPLS 72 (292)
T ss_dssp SS-EEEEEETTTCHH-HH----HHHHTTTS-HHHHHHHCC----TSSSSEEEEETTEEEEEEEEEEESTTCCECCEEEEE
T ss_pred CccEEEEEeCCCHHH-HH----HHHHHhCcCHhHHHHHhC----CCcCCEEEEECCeEEEEEEEcchhhcccccccceEE
Confidence 468899999988763 33 799999999999998877 4689999987776443 111478
Q ss_pred eeeecCeEEEEecCCCCccchHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCcc
Q 013824 175 AITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRL 254 (436)
Q Consensus 175 aII~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v 254 (436)
.+++++.+++++..+ .++++.+++|+.... ....-|+. ++..+++.+++.+...++.++++++.+++.+.+..
T Consensus 73 ~~~~~~~lit~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~--ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~ 145 (292)
T PF01544_consen 73 FILGDNFLITVHRDP---LPFIDELRERLESRN--ERPSSPED--LLYAILDEIVDDYFEVLEELEDELDELEDELDDRP 145 (292)
T ss_dssp EEEETTEEEEEESSS---SHCHHHHHHHHHSTT--CSCSSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTT
T ss_pred EEEecceEEEEECCC---ChHHHHHHHHhhccC--CCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999876 377788888887211 12222444 88999999999999999999999999999997778
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHH
Q 013824 255 TADILEQLRISKQTLVELSSRAGALRQMLLDLLE-DPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEML 333 (436)
Q Consensus 255 ~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~-dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~L 333 (436)
..+.+.++..+|+.+..+++.+.+.++++.++++ ..... .. ++....
T Consensus 146 ~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~----------------------------~~----~~~~~~ 193 (292)
T PF01544_consen 146 SNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPF----------------------------IS----DEDKEY 193 (292)
T ss_dssp THHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTT----------------------------SH----CHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhh----------------------------hh----hhHHHH
Confidence 8889999999999999999999999999988876 22111 00 112223
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCC-CCchHH
Q 013824 334 LENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLE-EHVFAF 412 (436)
Q Consensus 334 LE~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~E-e~~~gF 412 (436)
++....++..+.+.++.+++.++.+.+.+...++.++|++|+ +||++|++|+|+|||||+|||||.++|+ +|+|||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~---~LT~~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~ 270 (292)
T PF01544_consen 194 LRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMK---VLTIVTAIFLPLTFITGIFGMNFKGMPELDWPYGY 270 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH---HHHHHHHHHHHHHHHTTSTTS-SS---SSSSSS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhCCccCCCccCCccHH
Confidence 455666777788889999999999999999999999999999 4999999999999999999999999998 899977
Q ss_pred HHH--HHHHHHHHHHHHHHH
Q 013824 413 WLT--TAGIIVGAVMAFLPH 430 (436)
Q Consensus 413 ~~v--~~~mv~~~v~~~~~~ 430 (436)
+++ +++|++.++++|++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~ 290 (292)
T PF01544_consen 271 FFVIILGLMILVAILLYWWF 290 (292)
T ss_dssp HHH--HHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHHhe
Confidence 766 666666666666554
No 6
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.96 E-value=1.2e-27 Score=239.82 Aligned_cols=268 Identities=12% Similarity=0.133 Sum_probs=202.0
Q ss_pred ceeEEEEEecCCceeEeeecHHHHHHhcCCC---cchhhcccCCCCCCCCCceEEEecCeEEe-------------eccc
Q 013824 109 PVYEVVEVKSNGVVSTRKINRRQLLKSSGLR---PRDIRSIDPSLFLTNSMPSLLVREHAILL-------------NLGS 172 (436)
Q Consensus 109 ~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~---~RDLR~id~~~~~t~~~PsIl~R~~~Ilv-------------nle~ 172 (436)
+..-|+.+.+-... ..+ .+.+.+|++ +.|+++|..+ |++..+++++.+ ..++
T Consensus 24 ~~~vWiDl~~Pt~e-E~~----~v~~~~gl~~pt~~~~eeIe~s-------sR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (316)
T PRK11085 24 VDAVWIDLVEPDDD-ERL----RVQSELGQSLATRPELEDIEAS-------ARFFEDEDGLHIHSFFFFEDAEDHAGNST 91 (316)
T ss_pred CCCEEEEcCCCCHH-HHH----HHHHHhCCCCCChhhHHHHhhC-------ceEEEECCeEEEEEEEEecCCCCCcccee
Confidence 46779877544322 233 788999999 8999999762 667665554332 3456
Q ss_pred ceeeeecCeEEEEecCCCCccchHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccC
Q 013824 173 LRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPN 252 (436)
Q Consensus 173 IraII~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~ 252 (436)
|..|++++.++++...+. +.|..+++|++.+..... -|+. +|-.+++.+++.+.+.++.++.+++.+.+.+..
T Consensus 92 v~fil~~~~LvTvr~~~~---~~f~~~~~r~~~~~~~~~--~~~~--vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~ 164 (316)
T PRK11085 92 VAFTIRDGRLFTLREREL---PAFRLYRMRARSQTLVDG--NAYE--LLLDLFETKIEQLADEIENIYSDLEKLSRVIME 164 (316)
T ss_pred EEEEEECCEEEEEecCCc---chHHHHHHHHHhCCcccC--CHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999988664 677889988865432111 2332 555566666666666666666666666665543
Q ss_pred cc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHH
Q 013824 253 RL----TADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEE 328 (436)
Q Consensus 253 ~v----~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 328 (436)
.. -.+.+++|.++++.+..+|+.+.++++++..+.+.. .. . . +
T Consensus 165 ~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~-~~-----~------------------------~---~ 211 (316)
T PRK11085 165 GHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKA-RL-----P------------------------G---G 211 (316)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cC-----C------------------------h---h
Confidence 22 135678888899999999999999999988877521 00 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCC-C
Q 013824 329 EIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLE-E 407 (436)
Q Consensus 329 evE~LLE~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~E-e 407 (436)
..+ .+..+++|++.+.+.++.+.+.+..+.|.+...+++++|++||+ ||++|++|+|+|+|||+|||||++||| +
T Consensus 212 ~~~-~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~---lTv~s~if~pptliagiyGMNf~~mP~~~ 287 (316)
T PRK11085 212 QLE-QAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKI---FSVVSVVFLPPTLVASSYGMNFEFMPELK 287 (316)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHhhcccccCCCCCCC
Confidence 111 23578899988888999999999999999999999999999995 999999999999999999999999999 9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 013824 408 HVFAFWLTTAGIIVGAVMAFLPHVL 432 (436)
Q Consensus 408 ~~~gF~~v~~~mv~~~v~~~~~~~~ 432 (436)
|+||||+++++|+++++++|++|..
T Consensus 288 ~~~g~~~~l~~~~~~~~~~~~~f~r 312 (316)
T PRK11085 288 WSFGYPGAIILMILAGLAPYLYFKR 312 (316)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888887753
No 7
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=96.73 E-value=0.51 Score=47.95 Aligned_cols=70 Identities=9% Similarity=-0.103 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHh-ccCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 013824 355 AKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIF-GMNLKSYLEEHVFAFWLTTAGIIVGAVMAFL 428 (436)
Q Consensus 355 i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiF-GMNf~~~~Ee~~~gF~~v~~~mv~~~v~~~~ 428 (436)
++....+++..++..+..+--+-.++...|++.++.++= | ||=. ..+.-.-+.+.+++++++++..+.|.
T Consensus 241 ~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagiyGMN---f~~mP~-~~~~~g~~~~l~~~~~~~~~~~~~f~ 311 (316)
T PRK11085 241 MQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMN---FEFMPE-LKWSFGYPGAIILMILAGLAPYLYFK 311 (316)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cCCCCC-CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444577777777766655333444444443333321 2 4542 34444455566666666666665554
No 8
>PRK09546 zntB zinc transporter; Reviewed
Probab=95.27 E-value=0.86 Score=46.13 Aligned_cols=172 Identities=13% Similarity=0.116 Sum_probs=92.8
Q ss_pred cchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013824 214 MPFMIEAVEAALLSRV---QRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDP 290 (436)
Q Consensus 214 LpfE~~aLEaiLd~v~---~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd 290 (436)
+-|. +++.+.+.+. +.++++++++|+.+..--....+++. ..-+.+..+|+.+...+..+..+...=...+..+
T Consensus 143 ll~~--lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~-~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~ 219 (324)
T PRK09546 143 WLVD--VCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELA-LLRKQLIVMRRYMAPQRDVFARLASERLPWMSDD 219 (324)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChH
Confidence 4564 8899998885 55567778888766321001111111 1223477788888888888776653212222222
Q ss_pred hhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 013824 291 HEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRR 370 (436)
Q Consensus 291 ~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~LLE~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~~r 370 (436)
. ..++.+ -.+++..+ ..+++...+.+..+.+...+. ++..+ |+.
T Consensus 220 ~---~~~l~D-------------------------v~d~~~~~----~~~l~~~~~~~~~l~d~~~s~---~s~~~-N~~ 263 (324)
T PRK09546 220 D---RRRMQD-------------------------IADRLGRG----LDDLDACIARTAVLADEIASV---MAEAM-NRR 263 (324)
T ss_pred H---HHHHHH-------------------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHH-HHH
Confidence 1 112211 11111111 123333333333333333322 33333 667
Q ss_pred hHhhhhhhhHHHHHHHHHHHHHHHhHh--ccCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 013824 371 LEVSRVELLLQVGAFCVAVGALIAGIF--GMNLKSYLEEHVFAFWLTTAGIIVGAVMAFL 428 (436)
Q Consensus 371 N~imkl~l~LTIiS~if~p~TfIAGiF--GMNf~~~~Ee~~~gF~~v~~~mv~~~v~~~~ 428 (436)
.++|.+ +|++.+-.+..|=+-|.= ||=+-+.+. .-+..++++++++++..+.|-
T Consensus 264 m~~Lti---lt~IflPlT~IaGiyGMNf~~mPel~~~~-gy~~~l~im~~i~~~~~~~fk 319 (324)
T PRK09546 264 TYTMSL---MAMVFLPTTFLTGLFGVNLGGIPGGGWPF-GFSIFCLLLVVLIGGVAWWLK 319 (324)
T ss_pred HHHHHH---HHHHHHHHHHHHhhhccccCCCCCcCCcc-hHHHHHHHHHHHHHHHHHHHH
Confidence 888888 888888888777777864 687766554 445666666666666665553
No 9
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=95.03 E-value=1.4 Score=44.78 Aligned_cols=174 Identities=12% Similarity=0.065 Sum_probs=83.3
Q ss_pred CCCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhhccCccc-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013824 211 SPCMPFMIEAVEAALLSRV---QRLEQRLMHIEPRVQGLLEVLPNRLT-ADIL-EQLRISKQTLVELSSRAGALRQMLLD 285 (436)
Q Consensus 211 ~~~LpfE~~aLEaiLd~v~---~~Le~~l~~Le~~v~~~ld~L~~~v~-~~~L-~~L~~LKr~L~~l~~~v~~vre~L~~ 285 (436)
++++-|. ++|++.|.+. +.++.+++.+|+++..--.. .... -..+ +.+..+|+.+...++.+..+...-..
T Consensus 137 ~~~l~~~--lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~--~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~ 212 (322)
T COG0598 137 ADELLYA--LLDAIVDNYFPVLEQIEDELEAIEDQLLASTTN--EELERLGELRRSLVYLRRALAPLRDVLLRLARRPLD 212 (322)
T ss_pred HHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcc
Confidence 3456676 8888888875 55557777777665432111 0000 0122 23566777777766666655544332
Q ss_pred HhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013824 286 LLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVN 365 (436)
Q Consensus 286 LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~LLE~Y~r~vd~i~~~le~L~e~i~~ted~i~i~ 365 (436)
....+.. .++.+ . .++...+-..++.|. +.+..+ .+....+++.+
T Consensus 213 ~~~~~~~---~~l~d---------------------v-~~~~~~~~~~~~~~~-------~~l~~l---~d~~~s~is~~ 257 (322)
T COG0598 213 WLSEEDR---EYLRD---------------------V-LDHLTQLIEMLEALR-------ERLSSL---LDAYLSLINNN 257 (322)
T ss_pred cCCHHHH---HHHHH---------------------H-HHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHH
Confidence 2222221 11110 0 111112222222332 222222 23333446667
Q ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHh-HhccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013824 366 LSSRRLEVSRVELLLQVGAFCVAVGALIAG-IFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAF 427 (436)
Q Consensus 366 Ld~~rN~imkl~l~LTIiS~if~p~TfIAG-iFGMNf~~~~Ee~~~gF~~v~~~mv~~~v~~~ 427 (436)
++..+-.+--+-.++...|++.++.++=.+ +=+.|.++ ..+.++++.++++++..+.|
T Consensus 258 ~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~----Gy~~~l~~m~~~~~~~~~~f 316 (322)
T COG0598 258 QNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPY----GYPIALILMLLLALLLYLYF 316 (322)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcc----cHHHHHHHHHHHHHHHHHHH
Confidence 766665554443455555555555444333 23444433 44566666666666665544
No 10
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=92.94 E-value=5.4 Score=39.94 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=38.6
Q ss_pred CCCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHH-hhccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013824 211 SPCMPFMIEAVEAALLSRV---QRLEQRLMHIEPRVQGLL-EVLPNRLTADILEQLRISKQTLVELSSRAGALRQ 281 (436)
Q Consensus 211 ~~~LpfE~~aLEaiLd~v~---~~Le~~l~~Le~~v~~~l-d~L~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre 281 (436)
...+-|. +++.+++.+. +.++++++.+|+.+..-- +....++. ..-+.+..+++.+...+..+..+..
T Consensus 132 ~~~ll~~--il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~-~l~~~l~~l~~~l~~~~~vl~~l~~ 203 (318)
T TIGR00383 132 ADYLLYD--IFDAIIDSYFPLLENIEDELEELEDEIISGPTSTLMDEIL-SLRTELLALRRSLWPLRDVLNFLLR 203 (318)
T ss_pred HHHHHHH--HHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445665 8889998875 555677888877653210 01111111 1123466777777777777766644
No 11
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=90.90 E-value=9.1 Score=37.19 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=83.9
Q ss_pred cchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHH-hhccCccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Q 013824 214 MPFMIEAVEAALLSR---VQRLEQRLMHIEPRVQGLL-EVLPNRLTADILEQLRISKQTLVELSSRAGALRQ-MLLDLLE 288 (436)
Q Consensus 214 LpfE~~aLEaiLd~v---~~~Le~~l~~Le~~v~~~l-d~L~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre-~L~~LL~ 288 (436)
+.+. +++.+++.+ ++.++.+++.+|..+...- .....++.. .-+.+..+++.+...+..+..+.. .......
T Consensus 111 ll~~--il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~-l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~ 187 (292)
T PF01544_consen 111 LLYA--ILDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFD-LRRELSRLRRSLSPLREVLQRLLRRDDSPFIS 187 (292)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhh
Confidence 4454 677777776 4556677777777661111 111122111 224577788888887777743332 1112222
Q ss_pred CchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013824 289 DPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSS 368 (436)
Q Consensus 289 dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~LLE~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~ 368 (436)
.+. . .++ +++..-++...+.++.+.+.++.+.+...+. .+..++.
T Consensus 188 ~~~-~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~n~ 232 (292)
T PF01544_consen 188 DED-K--EYL-----------------------------RDLLDRIERLLERAESLRERLESLQDLYQSK---LSNRQNR 232 (292)
T ss_dssp CHH-H--HHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCHHHH
T ss_pred hhH-H--HHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 211 0 001 1222223334445555555555555544443 5556665
Q ss_pred HhhHhhhhhhhHHHHHHHHHHHHHHHhH--hccCCCCCCCCCch-HHHHHHHHHHHHHH
Q 013824 369 RRLEVSRVELLLQVGAFCVAVGALIAGI--FGMNLKSYLEEHVF-AFWLTTAGIIVGAV 424 (436)
Q Consensus 369 ~rN~imkl~l~LTIiS~if~p~TfIAGi--FGMNf~~~~Ee~~~-gF~~v~~~mv~~~v 424 (436)
.+..+-- +|++-+=++..|=+.|+ .||.....+..+.+ ++++++++++++..
T Consensus 233 ~m~~LT~----~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~ 287 (292)
T PF01544_consen 233 VMKVLTI----VTAIFLPLTFITGIFGMNFKGMPELDWPYGYFFVIILGLMILVAILLY 287 (292)
T ss_dssp HHHHHHH----HHHHHHHHHHHTTSTTS-SS---SSSSSS-SHHH--HHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHhhCCccCCCccCCccHHHHHHHHHHHHHHHHHHH
Confidence 5655543 66666776666666666 56887665555554 34666665555554
No 12
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=86.34 E-value=47 Score=34.93 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=35.0
Q ss_pred HHHHHhHHHHHHHHHHHHH-----HHHHHHH---HHHhhHhhhh-hhhHHHHHHHHHHHHHHHhHhccCCCCCCCCCchH
Q 013824 341 CESCHGQSERLLDSAKEME-----DSIAVNL---SSRRLEVSRV-ELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFA 411 (436)
Q Consensus 341 vd~i~~~le~L~e~i~~te-----d~i~i~L---d~~rN~imkl-~l~LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~g 411 (436)
+.++.+.++++...|.-+| ..+.... ...|--+.++ ++.||++++++...+.++++ .-|+-.+++-
T Consensus 300 aRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inllL~l~~vlLv~vSt~~~~-----~~Pl~~tR~r 374 (395)
T PF10267_consen 300 ARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLLLTLLTVLLVFVSTVANC-----PLPLTRTRLR 374 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CcHHhhccHH
Confidence 3444555666666666555 1221111 2234333333 66788888777777666653 3344466644
Q ss_pred H
Q 013824 412 F 412 (436)
Q Consensus 412 F 412 (436)
.
T Consensus 375 ~ 375 (395)
T PF10267_consen 375 T 375 (395)
T ss_pred H
Confidence 3
No 13
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=79.68 E-value=64 Score=31.87 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCc---cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 013824 220 AVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNR---LT---ADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEI 293 (436)
Q Consensus 220 aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~---v~---~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl 293 (436)
-+|+-++.-+..++.+.+.++.+.+.+--+++.. .. ...-+.+-.|.+.+.+.+..-..+++-|.+|-.-.++|
T Consensus 45 E~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3567777777888888888777665553333221 11 12345567788888888888888888888887655555
No 14
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=78.15 E-value=18 Score=30.84 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCCC--Cc-hHHHHHHHHHHHHHHH
Q 013824 349 ERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEE--HV-FAFWLTTAGIIVGAVM 425 (436)
Q Consensus 349 e~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~Ee--~~-~gF~~v~~~mv~~~v~ 425 (436)
+.+.+.+++--++....+..+..+..+. ..+.+++.+++..+++...++..+--++.. ++ ++|+++.++.++.+++
T Consensus 10 ~~~~~lv~~~i~La~~E~~~~~~~~~~~-~~~~~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~la~i 88 (121)
T PF07332_consen 10 DDLSTLVRTRIELAKAELREKARRLGRG-LALLVLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLLALI 88 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555665555555442 334455555555555554444444322221 22 5777777766666655
Q ss_pred HHHHH
Q 013824 426 AFLPH 430 (436)
Q Consensus 426 ~~~~~ 430 (436)
.+++.
T Consensus 89 ~~~~~ 93 (121)
T PF07332_consen 89 LLLIG 93 (121)
T ss_pred HHHHH
Confidence 55443
No 15
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=77.49 E-value=9.7 Score=32.40 Aligned_cols=60 Identities=33% Similarity=0.361 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhccCccchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013824 230 QRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLR----ISKQTLVELSSRAGALRQMLLDLLED 289 (436)
Q Consensus 230 ~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~----~LKr~L~~l~~~v~~vre~L~~LL~d 289 (436)
+.+.+++...+.++..++..+.+-++.+.+.+|. .++.++..+..+++++....+-|+++
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666766767777777777655433 45666666666666666665555543
No 16
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=71.47 E-value=2e+02 Score=33.18 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHhccCCCCCCC
Q 013824 386 CVAVGALIAGIFGMNLKSYLE 406 (436)
Q Consensus 386 if~p~TfIAGiFGMNf~~~~E 406 (436)
++...+++.|++|-.=+..|-
T Consensus 429 ~~~~lGLl~G~~G~~~~~~p~ 449 (806)
T PF05478_consen 429 LCLLLGLLCGCCGYRRRADPT 449 (806)
T ss_pred HHHHHHHHHhhccCCCCCCCc
Confidence 445578899999977665554
No 17
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=68.97 E-value=12 Score=31.69 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHhHhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 013824 379 LLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLP 429 (436)
Q Consensus 379 ~LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~gF~~v~~~mv~~~v~~~~~ 429 (436)
.++++...++.++++..+.|.=++..+...+ ++++.++++|.+++++.
T Consensus 44 ~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~---~~tl~~lllGv~~G~~n 91 (100)
T TIGR02230 44 MFGLIGWSVAIPTLLGVAVGIWLDRHYPSPF---SWTLTMLIVGVVIGCLN 91 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHHHHH
Confidence 4888899999999999999998776544333 33333444444443333
No 18
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=64.03 E-value=6.4 Score=34.12 Aligned_cols=53 Identities=8% Similarity=0.089 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 013824 377 ELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHVL 432 (436)
Q Consensus 377 ~l~LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~gF~~v~~~mv~~~v~~~~~~~~ 432 (436)
++.+.++|.++...|+|.|++ |+..|.+--+-|++++.+.++++.++.++||+
T Consensus 31 nliiG~vT~l~VLvtii~afv---f~~~~p~p~~iffavcI~l~~~s~~lLI~WYR 83 (118)
T PF10856_consen 31 NLIIGAVTSLFVLVTIISAFV---FPQDPPKPLHIFFAVCILLICISAILLIFWYR 83 (118)
T ss_pred EeehHHHHHHHHHHHHhheEE---ecCCCCCceEEehHHHHHHHHHHHHhheeehh
Confidence 346888888888888877765 44433334466777777778888877777775
No 19
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=55.70 E-value=1.4e+02 Score=26.12 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHhhHhhhhhhhHHHHHHHHHH----HHHHHhHhccCC
Q 013824 332 MLLENYLQRCESCHGQSERLLDSAKEMED------SIAVNLSSRRLEVSRVELLLQVGAFCVAV----GALIAGIFGMNL 401 (436)
Q Consensus 332 ~LLE~Y~r~vd~i~~~le~L~e~i~~ted------~i~i~Ld~~rN~imkl~l~LTIiS~if~p----~TfIAGiFGMNf 401 (436)
.++-.|-.+.-.+.+.+..+.+..++..+ .-++..=.+|=.+++....+.+.|.++.. ..|+.+++++|+
T Consensus 14 ~ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~ 93 (130)
T PF11026_consen 14 LLLLVLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDL 93 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 34445555555555555555444332110 11222224555555555555555554443 344556665554
Q ss_pred C
Q 013824 402 K 402 (436)
Q Consensus 402 ~ 402 (436)
.
T Consensus 94 ~ 94 (130)
T PF11026_consen 94 S 94 (130)
T ss_pred H
Confidence 3
No 20
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=53.79 E-value=40 Score=25.07 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhHhccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013824 380 LQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAF 427 (436)
Q Consensus 380 LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~gF~~v~~~mv~~~v~~~ 427 (436)
.+-++++++...+..|+| |.+ +.-|.-||+.+..++.+.+.+.+
T Consensus 4 ~~~~~f~i~~~~~~iGl~--~~~--~~l~~KGy~~~~~l~~l~s~~tl 47 (53)
T PF05360_consen 4 QSWISFGISIVLMLIGLW--NAP--LDLSEKGYYAMGLLFLLFSAFTL 47 (53)
T ss_pred HHHHHHHHHHHHHHHHHH--hCC--CCHHHHHHHHHHHHHHHHHHHhh
Confidence 566788888999999999 433 33577899988887777666543
No 21
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=51.30 E-value=76 Score=25.73 Aligned_cols=27 Identities=7% Similarity=-0.026 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHhHhccCCCCC
Q 013824 378 LLLQVGAFCVAVGALIAGIFGMNLKSY 404 (436)
Q Consensus 378 l~LTIiS~if~p~TfIAGiFGMNf~~~ 404 (436)
...|++.+++-..-...+-||..=..+
T Consensus 7 A~~tl~l~l~yf~~W~~~ay~~~~~~~ 33 (80)
T PF06196_consen 7 ARWTLGLTLIYFAWWYGFAYGLGNGDG 33 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 346777777777778888899885544
No 22
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=50.99 E-value=49 Score=36.76 Aligned_cols=62 Identities=6% Similarity=0.067 Sum_probs=39.1
Q ss_pred HHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 013824 364 VNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHV 431 (436)
Q Consensus 364 i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~gF~~v~~~mv~~~v~~~~~~~ 431 (436)
..+..+|++.+. +.+.+..+++.+++.+.++-.+.. ...|.|+||+..+...+++ ++.+.||
T Consensus 156 sEl~p~k~R~~~----~~~~~~~~i~~~~~~~~ia~~~~~-~~~WRw~~~~~~i~~~i~~-vl~~~fY 217 (599)
T PF06609_consen 156 SELVPNKWRGLG----LAIASIPFIITTWISPLIAQLFAA-HSGWRWIFYIFIIWSGIAL-VLIFFFY 217 (599)
T ss_pred HHhcccchhhhH----hHHHHHHHHhhhcccHHHHHHhcc-CCCcchHHHHHHHHHHHHH-HHHHHHh
Confidence 444567888765 556666677777777777776632 3489999987765444433 3333444
No 23
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=49.48 E-value=1.9e+02 Score=25.73 Aligned_cols=113 Identities=22% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhcccccc
Q 013824 225 LLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCT 304 (436)
Q Consensus 225 Ld~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~ 304 (436)
|+..++.+...+..++..+....+++...+....-.--..+...+..+...+....+.+..-++.
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~--------------- 67 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEELSDEIADRLAEEIEALSERLESELEELSDRLEERLDEVKERIEE--------------- 67 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred ccCCCCCCCcCcchhhhhhhhhHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 013824 305 LRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRC-ESCHGQSERLLDSAKEMEDSIAVNLSSRRLEV 373 (436)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~eevE~LLE~Y~r~v-d~i~~~le~L~e~i~~ted~i~i~Ld~~rN~i 373 (436)
..+++...++.+...+ +.+....+.+.+.+....+-+...+......+
T Consensus 68 ---------------------~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 116 (202)
T PF01442_consen 68 ---------------------RIEELKNSLDSSTSELDESLSERAEELKERLEARAEELESRLEEEVDEL 116 (202)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 24
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.77 E-value=2.2e+02 Score=26.21 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=16.9
Q ss_pred HHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHh
Q 013824 363 AVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIF 397 (436)
Q Consensus 363 ~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiF 397 (436)
...+.+.+++++|. ++.++++.++++.|+|
T Consensus 144 r~~iE~~K~~~lr~-----~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 144 RTEIESLKWDTLRW-----LVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 34455667777773 2344455555666654
No 25
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=47.33 E-value=2.3e+02 Score=26.09 Aligned_cols=18 Identities=44% Similarity=0.768 Sum_probs=0.4
Q ss_pred HHHHHHHhHhccCCCCCC
Q 013824 388 AVGALIAGIFGMNLKSYL 405 (436)
Q Consensus 388 ~p~TfIAGiFGMNf~~~~ 405 (436)
-|..+|||+||+.=.-.+
T Consensus 155 FP~~lvA~~~gf~~~~~f 172 (186)
T PF04011_consen 155 FPTNLVAGIFGFKPKEYF 172 (186)
T ss_dssp -----------------S
T ss_pred ccHHHHHHhcCCCcCCCc
Confidence 489999999997644333
No 26
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=46.73 E-value=1.1e+02 Score=25.33 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhHhhhh
Q 013824 357 EMEDSIAVNLSSRRLEVSRV 376 (436)
Q Consensus 357 ~ted~i~i~Ld~~rN~imkl 376 (436)
+.+|.+.-+.+.+||.+.+.
T Consensus 3 ~~~~~~~~Y~~~H~~~~n~~ 22 (95)
T PF06127_consen 3 SLEEFFAFYLSYHRNPINRA 22 (95)
T ss_pred CHHHHHHHHHHHcCCHhhHH
Confidence 34566666777777776664
No 27
>COG3462 Predicted membrane protein [Function unknown]
Probab=46.66 E-value=91 Score=26.88 Aligned_cols=49 Identities=16% Similarity=0.362 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHhHhc-----cCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 013824 379 LLQVGAFCVAVGALIAGIFG-----MNLKSYLEEHVFAFWLTTAGIIVGAVMAFL 428 (436)
Q Consensus 379 ~LTIiS~if~p~TfIAGiFG-----MNf~~~~Ee~~~gF~~v~~~mv~~~v~~~~ 428 (436)
.+.+++++...+-.-.|+|| ||..-|. ..-||.|++.-++.+.+++.++
T Consensus 12 ligliavi~~v~li~~~~~gg~~y~~gy~gm~-GG~yGm~lImpI~~~vvli~lv 65 (117)
T COG3462 12 LIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMM-GGLYGMWLIMPIFWAVVLIFLV 65 (117)
T ss_pred HHHHHHHHHHHHHhhcccccCcccCCCccccc-cchhhhHHHHHHHHHHHHHHHH
Confidence 34555555444444445555 3331111 2356767666555444443333
No 28
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=46.35 E-value=83 Score=29.71 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.4
Q ss_pred HHHHHHHHhHh
Q 013824 387 VAVGALIAGIF 397 (436)
Q Consensus 387 f~p~TfIAGiF 397 (436)
++..+++.|+.
T Consensus 90 ~~if~~~~gi~ 100 (206)
T PF06570_consen 90 FGIFSLLFGIM 100 (206)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 29
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=45.57 E-value=68 Score=29.86 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013824 229 VQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLL 287 (436)
Q Consensus 229 ~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL 287 (436)
.+.|+...+.++.++.++.+.+...-+.-.--+|++.|+++-++...++.+...|.++-
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444443333333456789999999999999999999988843
No 30
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=44.97 E-value=52 Score=29.94 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=40.4
Q ss_pred HHHHHHHHHh-hHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 013824 361 SIAVNLSSRR-LEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLP 429 (436)
Q Consensus 361 ~i~i~Ld~~r-N~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~gF~~v~~~mv~~~v~~~~~ 429 (436)
++.-+-..++ +++++ +-+++|+.|+..+++.|++=+++..---..---||......-+.++...+.
T Consensus 52 Ly~~~ty~k~~~k~l~---kt~~iSF~~avLGiifgI~~qll~~WslsiM~wYWll~LlLyl~tiisLVi 118 (161)
T PF13042_consen 52 LYCKNTYDKKFSKVLI---KTNVISFNFAVLGIIFGIIHQLLGKWSLSIMMWYWLLILLLYLITIISLVI 118 (161)
T ss_pred HhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433333344 55554 689999999999999999988875311123345666655555554444333
No 31
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=42.99 E-value=4.3e+02 Score=27.87 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=9.9
Q ss_pred HHHHhcCCCcchhhcccC
Q 013824 131 QLLKSSGLRPRDIRSIDP 148 (436)
Q Consensus 131 ~L~~~~gL~~RDLR~id~ 148 (436)
+|-+++.=.-|-|+.|++
T Consensus 102 qlqkkL~~y~~rLkeien 119 (455)
T KOG3850|consen 102 QLQKKLEQYHRRLKEIEN 119 (455)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444444444566777775
No 32
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=41.40 E-value=2e+02 Score=23.59 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=15.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Q 013824 407 EHVFAFWLTTAGIIVGAVMAFLPH 430 (436)
Q Consensus 407 e~~~gF~~v~~~mv~~~v~~~~~~ 430 (436)
.-++|+++.++..+++.++++++.
T Consensus 51 ~~t~g~~~g~~~~~~~~~l~~~Yv 74 (91)
T PF04341_consen 51 SLTLGIVLGLGQIVFAWVLTWLYV 74 (91)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 567888877776665555554443
No 33
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.61 E-value=51 Score=28.25 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhHhccCCCCCCC--CCchHHH
Q 013824 382 VGAFCVAVGALIAGIFGMNLKSYLE--EHVFAFW 413 (436)
Q Consensus 382 IiS~if~p~TfIAGiFGMNf~~~~E--e~~~gF~ 413 (436)
.++++.+...+++++.|.|.-..+. =+||-|.
T Consensus 3 S~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFi 36 (108)
T PF06210_consen 3 SWTFIIIFTVFLAVWILLNILAPPRPAFDPYPFI 36 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccCCCCCccHH
Confidence 4678888899999999999976553 2455543
No 34
>PRK13682 hypothetical protein; Provisional
Probab=39.93 E-value=97 Score=23.07 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhHhcc
Q 013824 383 GAFCVAVGALIAGIFGM 399 (436)
Q Consensus 383 iS~if~p~TfIAGiFGM 399 (436)
|+.+|.+.+.|||+||.
T Consensus 4 waliFliiA~iA~~lGF 20 (51)
T PRK13682 4 WAIIFLVIALIAAVLGF 20 (51)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 67888999999999985
No 35
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=38.59 E-value=1e+02 Score=27.82 Aligned_cols=17 Identities=24% Similarity=0.823 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHhccCC
Q 013824 385 FCVAVGALIAGIFGMNL 401 (436)
Q Consensus 385 ~if~p~TfIAGiFGMNf 401 (436)
+++.++-.+||+||.|=
T Consensus 83 LlivIgivvaGvygi~k 99 (169)
T COG5130 83 LLIVIGIVVAGVYGIRK 99 (169)
T ss_pred HHHHHhhhhheeeehhh
Confidence 45667788999999984
No 36
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=37.44 E-value=1.3e+02 Score=28.21 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013824 259 LEQLRISKQTLVELSSRAGALRQMLLDLLE 288 (436)
Q Consensus 259 L~~L~~LKr~L~~l~~~v~~vre~L~~LL~ 288 (436)
++.=..+|++++.++.++..+.+-++++|+
T Consensus 106 ~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 106 QEQAPALKKDVTKLKQDIKSLDKKLDKILE 135 (189)
T ss_pred HhhCchHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334456778888888888888777777765
No 37
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=36.80 E-value=43 Score=27.98 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=23.4
Q ss_pred HHHHHHhHhccCCCCCC-C-CCchHH-HHHHHHHHHHHHHHHHHH
Q 013824 389 VGALIAGIFGMNLKSYL-E-EHVFAF-WLTTAGIIVGAVMAFLPH 430 (436)
Q Consensus 389 p~TfIAGiFGMNf~~~~-E-e~~~gF-~~v~~~mv~~~v~~~~~~ 430 (436)
.+|||+|.=|.=+--+. . .-||.+ |-+++.+++++++.|.+-
T Consensus 32 ~~tFv~G~~~~f~~Q~~iqrrlpYp~q~~~LVS~v~~sv~sY~vT 76 (94)
T PF15110_consen 32 LFTFVLGTGATFFLQKAIQRRLPYPFQWNILVSVVVASVASYQVT 76 (94)
T ss_dssp HHHHHGGGGHHHHHHHHHHTTSSSSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhCCCCCCchhHHHHHHhhhhhhhhh
Confidence 34555554333222222 1 456666 667777778888887654
No 38
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=36.71 E-value=1e+02 Score=23.95 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHhHhccCCCCCCCCCchHHHHH
Q 013824 379 LLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLT 415 (436)
Q Consensus 379 ~LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~gF~~v 415 (436)
+++.+++..+.+++.+.+-||=|++.. .-+||.+.+
T Consensus 9 vlAtiavFiaLagl~~~I~GlLfD~~~-~~~yg~~al 44 (62)
T PF11177_consen 9 VLATIAVFIALAGLAAVIHGLLFDEER-VFRYGVIAL 44 (62)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccc-hhHHHHHHH
Confidence 578888888889999999999776422 234444433
No 39
>COG1422 Predicted membrane protein [Function unknown]
Probab=36.07 E-value=3.9e+02 Score=25.51 Aligned_cols=26 Identities=4% Similarity=0.034 Sum_probs=14.5
Q ss_pred HHHhhHhhhhhhhHHHHHHHHHHHHH
Q 013824 367 SSRRLEVSRVELLLQVGAFCVAVGAL 392 (436)
Q Consensus 367 d~~rN~imkl~l~LTIiS~if~p~Tf 392 (436)
...++++||..-+-=+++.+.+++.|
T Consensus 111 ~~~Q~elmk~qfkPM~~~~v~tI~~F 136 (201)
T COG1422 111 MDDQRELMKMQFKPMLYISVLTIPFF 136 (201)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34467777665555555555555544
No 40
>COG5487 Small integral membrane protein [Function unknown]
Probab=36.04 E-value=1.5e+02 Score=22.08 Aligned_cols=17 Identities=47% Similarity=0.509 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhHhcc
Q 013824 383 GAFCVAVGALIAGIFGM 399 (436)
Q Consensus 383 iS~if~p~TfIAGiFGM 399 (436)
|+.+|.+-++|||.+|.
T Consensus 4 waliFlvialIa~~lGF 20 (54)
T COG5487 4 WALIFLVIALIAGALGF 20 (54)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 67889999999999985
No 41
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=35.76 E-value=89 Score=21.20 Aligned_cols=25 Identities=8% Similarity=-0.067 Sum_probs=12.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHH
Q 013824 405 LEEHVFAFWLTTAGIIVGAVMAFLP 429 (436)
Q Consensus 405 ~Ee~~~gF~~v~~~mv~~~v~~~~~ 429 (436)
+||.|-|-..++++..+..++.|+.
T Consensus 1 meekp~Gal~vv~iLt~~ILvFWfg 25 (34)
T PF08113_consen 1 MEEKPKGALGVVMILTAFILVFWFG 25 (34)
T ss_dssp ---STHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcceeeeHHHHHHHHHHHHHH
Confidence 3666877766665555444444443
No 42
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.72 E-value=1e+02 Score=28.50 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhHhc
Q 013824 380 LQVGAFCVAVGALIAGIFG 398 (436)
Q Consensus 380 LTIiS~if~p~TfIAGiFG 398 (436)
.+.+.+.++.++....+||
T Consensus 24 ~~lai~sl~~s~llI~lFg 42 (165)
T PF11286_consen 24 ASLAILSLAFSQLLIALFG 42 (165)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3344444555777788999
No 43
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=35.45 E-value=23 Score=33.31 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=24.7
Q ss_pred HHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhcc
Q 013824 363 AVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGM 399 (436)
Q Consensus 363 ~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGM 399 (436)
--.++-+||++..+.+. .+.+.+|+.+.++.|.++|
T Consensus 87 ~G~~s~~rN~i~~l~~y-~~~~~~~gl~pl~~g~~~~ 122 (186)
T PF07086_consen 87 LGLLSLRRNNISLLRLY-MIGSSLFGLLPLIYGAMYY 122 (186)
T ss_pred HHHHhcccchHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34567789998765332 3566777788888888774
No 44
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=34.69 E-value=22 Score=37.26 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 013824 415 TTAGIIVGAVMAFLPHVLVSEG 436 (436)
Q Consensus 415 v~~~mv~~~v~~~~~~~~~~~~ 436 (436)
|.++++++.+++|+-||||+-|
T Consensus 374 vavvvvVgglvGfLcWwf~crg 395 (397)
T PF03302_consen 374 VAVVVVVGGLVGFLCWWFICRG 395 (397)
T ss_pred ehhHHHHHHHHHHHhhheeecc
Confidence 4456678889999999999865
No 45
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=33.93 E-value=2.1e+02 Score=31.01 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 013824 327 EEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLK 402 (436)
Q Consensus 327 ~eevE~LLE~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~ 402 (436)
.+.+|..|..|..++..+...+..|++.-.. ++..|.|++.-..++ =.++.-+..|+.+|-+|-.=++.
T Consensus 30 L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~----l~~~L~Nrk~~~~~L---~~~i~~i~ipP~lI~~I~~~~v~ 98 (508)
T PF04129_consen 30 LESLEEMLSNFQNDLGSISSEIRSLQERSSS----LNVKLKNRKAVEEKL---SPFIDDIVIPPDLIRSICEGPVN 98 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHH---HHHHHHHcCCHHHHHhHhcCCCC
Confidence 4556677777777777666666666654443 577888888777774 56777788999999998765543
No 46
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.93 E-value=4.2e+02 Score=24.90 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCchhhhHHhhc
Q 013824 263 RISKQTLVELSSRAGALRQMLLDL-LEDPHEIRRICIM 299 (436)
Q Consensus 263 ~~LKr~L~~l~~~v~~vre~L~~L-L~dd~dl~~m~Lt 299 (436)
..+++++....+.+....+-...- -.++++++.-++.
T Consensus 54 ~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~ 91 (221)
T PF04012_consen 54 KRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQ 91 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555555554444333333 3456677665554
No 47
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=32.49 E-value=1.8e+02 Score=26.22 Aligned_cols=26 Identities=19% Similarity=-0.013 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHhHhccCCCCCCCCCc
Q 013824 379 LLQVGAFCVAVGALIAGIFGMNLKSYLEEHV 409 (436)
Q Consensus 379 ~LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~ 409 (436)
.|..++++++..+ -+|++.+ +++++.
T Consensus 31 ~lg~~a~~iA~~a---~~~d~~~--~f~~s~ 56 (162)
T PF06703_consen 31 ALGYLAVIIAGFA---FFYDYKY--PFPESK 56 (162)
T ss_pred HHHHHHHHHHHHH---HHhhhcC--CCCccH
Confidence 4555555555444 3566654 344443
No 48
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.47 E-value=6.6e+02 Score=27.34 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=22.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013824 253 RLTADILEQLRISKQTLVELSSRAGALRQML 283 (436)
Q Consensus 253 ~v~~~~L~~L~~LKr~L~~l~~~v~~vre~L 283 (436)
+-..+..-+|..+|+++.+|.+|+-.+--.+
T Consensus 369 k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 369 KHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567789999999999998886654333
No 49
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=29.55 E-value=59 Score=32.45 Aligned_cols=45 Identities=11% Similarity=0.282 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhHhc--c--CCCCCCCCCchHHHHHHHHHHHHHHHH
Q 013824 380 LQVGAFCVAVGALIAGIFG--M--NLKSYLEEHVFAFWLTTAGIIVGAVMA 426 (436)
Q Consensus 380 LTIiS~if~p~TfIAGiFG--M--Nf~~~~Ee~~~gF~~v~~~mv~~~v~~ 426 (436)
.|++..+++.+.+++|+++ . |+... =++.++.+|+|++++..++.
T Consensus 7 ~t~iGii~g~~~i~~~i~~gg~~~~~~~~--~~~~s~lIV~GGt~~a~lis 55 (271)
T PRK06926 7 LTPVGIFLGITIVVLGVISNSGLSGFLSF--IDLTSILIVTGGLCAALFIS 55 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhHHH--hhHhHHHHHHHHHHHHHHHh
Confidence 5788888888888878763 3 22222 24667777777776655543
No 50
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=29.06 E-value=1.7e+02 Score=31.95 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHH--HHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhc--cCCCC
Q 013824 329 EIEMLLENYLQRCESCHGQSERLLDSAKEMEDS-IAVNL--SSRRLEVSRVELLLQVGAFCVAVGALIAGIFG--MNLKS 403 (436)
Q Consensus 329 evE~LLE~Y~r~vd~i~~~le~L~e~i~~ted~-i~i~L--d~~rN~imkl~l~LTIiS~if~p~TfIAGiFG--MNf~~ 403 (436)
-+|+-|...+++.+.+...=..|+.+++.++.- -...+ -..||+=- .-++.+|...++||+-.|| ||+.+
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk-----~Rkvvaimv~maFi~f~~~~p~ni~n 380 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKK-----KRKVVAIMVVMAFIIFNYGSPMNILN 380 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCccccccc-----chhhhhHHHHHHHHHHhccCcccccC
Confidence 455555555555554444444555555543220 00111 12233221 2355666777888889999 99998
Q ss_pred CCC
Q 013824 404 YLE 406 (436)
Q Consensus 404 ~~E 406 (436)
.++
T Consensus 381 nln 383 (655)
T KOG4343|consen 381 NLN 383 (655)
T ss_pred Ccc
Confidence 775
No 51
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=28.56 E-value=98 Score=32.24 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.3
Q ss_pred HhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCC
Q 013824 369 RRLEVSRVELLLQVGAFCVAVGALIAGIFGMNL 401 (436)
Q Consensus 369 ~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf 401 (436)
-+|+++|+.++.+...++-+++|++++.+=||+
T Consensus 354 ~~N~~~rvlLv~~~tNlGs~iGt~~~~~~~l~~ 386 (388)
T COG1916 354 YKNKFFRVLLVVAFTNLGSMIGTFIGLPVLLNV 386 (388)
T ss_pred HhchhHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 379999998888888899999999998887764
No 52
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=28.48 E-value=62 Score=31.88 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHH-hHhccCCCCCCCC----C--chHHHHHHHHHH
Q 013824 383 GAFCVAVGALIA-GIFGMNLKSYLEE----H--VFAFWLTTAGII 420 (436)
Q Consensus 383 iS~if~p~TfIA-GiFGMNf~~~~Ee----~--~~gF~~v~~~mv 420 (436)
++.-++|++.=. -++|||..+.+.. | .|+||++.++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (249)
T PRK15348 187 AEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYQLMLSLTG 231 (249)
T ss_pred CccccCCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 444444443222 3799999986653 3 478888887663
No 53
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=28.12 E-value=3.2e+02 Score=23.92 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013824 224 ALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLL 284 (436)
Q Consensus 224 iLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~ 284 (436)
.+......+.+++..+-+++..+.++.++..+.+. +.. ++++..++++++-++.++.
T Consensus 11 aig~ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~-~~~---~~el~~L~rR~~li~~ai~ 67 (130)
T PF11026_consen 11 AIGLLLLVLTNRLARIVDRIRQLHDELRDAPDEEE-RRL---RRELRILRRRARLIRRAIT 67 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchh-hhH---HHHHHHHHHHHHHHHHHHH
Confidence 33444566667777777777777777766544433 222 7777778888887777764
No 54
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=27.65 E-value=36 Score=27.57 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHhHhccCCC
Q 013824 379 LLQVGAFCVAVGALIAGIFGMNLK 402 (436)
Q Consensus 379 ~LTIiS~if~p~TfIAGiFGMNf~ 402 (436)
.+++++++|.+.--++++||+.+.
T Consensus 13 w~ali~al~l~~q~v~~~fG~~~~ 36 (78)
T TIGR01598 13 LIALLGALFLAIQSILDNFGVLWL 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHH
Confidence 488888899888889999999776
No 55
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=27.39 E-value=1.4e+02 Score=28.38 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhHhcc
Q 013824 380 LQVGAFCVAVGALIAGIFGM 399 (436)
Q Consensus 380 LTIiS~if~p~TfIAGiFGM 399 (436)
++...+.++|..+++|++||
T Consensus 40 ~S~l~~vyG~~l~~~~~~~~ 59 (196)
T PF06770_consen 40 CSGLVFVYGPLLLLVTTWGV 59 (196)
T ss_pred ehHHHHHHHHHHHHHHHHHH
Confidence 66677888888888899988
No 56
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.22 E-value=1.2e+03 Score=28.19 Aligned_cols=6 Identities=33% Similarity=1.359 Sum_probs=4.2
Q ss_pred HHhHhc
Q 013824 393 IAGIFG 398 (436)
Q Consensus 393 IAGiFG 398 (436)
+.|+||
T Consensus 514 ~~Gv~G 519 (1163)
T COG1196 514 LPGVYG 519 (1163)
T ss_pred CCCccc
Confidence 667777
No 57
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=27.21 E-value=2.7e+02 Score=22.46 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=16.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHH
Q 013824 405 LEEHVFAFWLTTAGIIVGAVMAFL 428 (436)
Q Consensus 405 ~Ee~~~gF~~v~~~mv~~~v~~~~ 428 (436)
.-..|.|||...-+.+.+-+++.+
T Consensus 37 ~~GfPlgfw~aaQGsi~~fviLi~ 60 (77)
T TIGR03647 37 FFGFPLGFWFAQQGSIYVFVVLIF 60 (77)
T ss_pred eCCCChHHHHHHhhHHHHHHHHHH
Confidence 347899999888766655544333
No 58
>COG2733 Predicted membrane protein [Function unknown]
Probab=26.44 E-value=2.1e+02 Score=30.16 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=31.0
Q ss_pred HHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCCCCch-HHHHHHH-HHHHHHHHHHHHHHH
Q 013824 368 SRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVF-AFWLTTA-GIIVGAVMAFLPHVL 432 (436)
Q Consensus 368 ~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~-gF~~v~~-~mv~~~v~~~~~~~~ 432 (436)
+++|++-+...+.|++.++++.+=+++-.|+=| .| ||-...+ ...+|+++=||.+..
T Consensus 2 ~rl~~lrr~K~iA~~lL~i~~~~f~l~~~~~nn--------~w~g~v~a~aEAAmVGgLADWFAVtA 60 (415)
T COG2733 2 NKLNELRRAKVIATGLLLIAAGVFILCRFFENN--------AWVGFVGAIAEAAMVGGLADWFAVTA 60 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 355555444445666666666555556666655 44 3533332 334566666666554
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=26.14 E-value=7e+02 Score=25.25 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=8.4
Q ss_pred HHHHhcCCCcch
Q 013824 131 QLLKSSGLRPRD 142 (436)
Q Consensus 131 ~L~~~~gL~~RD 142 (436)
+..+..|++..|
T Consensus 18 ~FL~~~~I~F~d 29 (325)
T PF08317_consen 18 DFLNMTGIRFYD 29 (325)
T ss_pred HHHHHhCceeCC
Confidence 777777777744
No 60
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=25.87 E-value=2.6e+02 Score=26.30 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHhHhccCCCCCCC--CCchHHHHHHHHHHHHHHHHHHHHHH
Q 013824 379 LLQVGAFCVAVGALIAGIFGMNLKSYLE--EHVFAFWLTTAGIIVGAVMAFLPHVL 432 (436)
Q Consensus 379 ~LTIiS~if~p~TfIAGiFGMNf~~~~E--e~~~gF~~v~~~mv~~~v~~~~~~~~ 432 (436)
+|++++.+....++ +++=+..++-. .-..|+|.++++.++.++.+|+.|..
T Consensus 27 vLgvVs~~iL~F~~---~~~~~~~~~~~~~G~~~gl~~a~~gl~~l~~si~~~fry 79 (183)
T PF12263_consen 27 VLGVVSAVILLFAN---LFSGRATSPNRNPGLGIGLFLAICGLVALFFSIFWSFRY 79 (183)
T ss_pred HHHHHHHHHHHHHh---hccccCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777766665554 23444443332 24578888888888888777776643
No 61
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.82 E-value=3e+02 Score=24.31 Aligned_cols=62 Identities=15% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhcc--CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013824 225 LLSRVQRLEQRLMHIEPRVQGLLEVLP--NRLTADILEQLRISKQTLVELSSRAGALRQMLLDL 286 (436)
Q Consensus 225 Ld~v~~~Le~~l~~Le~~v~~~ld~L~--~~v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~L 286 (436)
|+.+.+.|..-=++|..+++.+-+.+. ..+....-+++-.++..+..++..+..++.++..|
T Consensus 52 l~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 52 LEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
No 62
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.56 E-value=6.4e+02 Score=24.61 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 013824 379 LLQVGAFCVAVGALIA 394 (436)
Q Consensus 379 ~LTIiS~if~p~TfIA 394 (436)
-++.+-++|+..++|.
T Consensus 153 gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 153 GIGAMLFVFMLFALVM 168 (230)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4666666666665554
No 63
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=24.69 E-value=2.7e+02 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHhccCCCC
Q 013824 376 VELLLQVGAFCVAVGALIAGIFGMNLKS 403 (436)
Q Consensus 376 l~l~LTIiS~if~p~TfIAGiFGMNf~~ 403 (436)
++..||+++=+.-..-|+.|+.+| |.+
T Consensus 17 iD~~lT~~aW~gfi~l~~~~~~~~-~~~ 43 (153)
T PRK14584 17 IDIILTALAWFGFLFLLVRGLLEM-ISR 43 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 345678777776677788899988 543
No 64
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=24.64 E-value=2.1e+02 Score=27.87 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 013824 409 VFAFWLTTAGIIVGAVMAF 427 (436)
Q Consensus 409 ~~gF~~v~~~mv~~~v~~~ 427 (436)
.|.||+++++++...++++
T Consensus 51 ~~~~~~i~gi~~g~l~am~ 69 (224)
T PF13829_consen 51 SWWYWLIIGILLGLLAAMI 69 (224)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 5667777776654444433
No 65
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=24.53 E-value=7.6e+02 Score=25.13 Aligned_cols=13 Identities=54% Similarity=0.654 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhc
Q 013824 276 AGALRQMLLDLLE 288 (436)
Q Consensus 276 v~~vre~L~~LL~ 288 (436)
...++++|.+|..
T Consensus 31 ~d~l~~~L~~l~~ 43 (313)
T PF05461_consen 31 ADALREALKELTE 43 (313)
T ss_pred HHHHHHHHHHHHh
Confidence 3344455555444
No 66
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.35 E-value=2.8e+02 Score=29.07 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013824 227 SRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLD 285 (436)
Q Consensus 227 ~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~ 285 (436)
.+...++.+++.++.++..+.+.+++.. ..-.++..+++++..+.+++..+.+.+..
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~--k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP--KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467777888888888887777777666 44556778888888888888877776554
No 67
>PRK08124 flagellar motor protein MotA; Validated
Probab=23.70 E-value=1e+02 Score=30.47 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhHhc--cCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 013824 380 LQVGAFCVAVGALIAGIFG--MNLKSYLEEHVFAFWLTTAGIIVGAVMA 426 (436)
Q Consensus 380 LTIiS~if~p~TfIAGiFG--MNf~~~~Ee~~~gF~~v~~~mv~~~v~~ 426 (436)
.|++.++++.+.++.|++. =|+...+ ++.+|.+|+|+++...++.
T Consensus 4 ~tiiG~~~~~~~i~~g~~~~gg~~~~~~--~~~~~lIV~Ggt~~a~~i~ 50 (263)
T PRK08124 4 TTIIGLILGLIAVVVGMVVKGASLAVLL--NPAAILIIIVGTIAAVMIA 50 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 6888888888888888763 2333222 4677778877776665543
No 68
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=23.65 E-value=1.2e+02 Score=30.15 Aligned_cols=91 Identities=13% Similarity=0.187 Sum_probs=52.4
Q ss_pred hhhhhhCCCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHHHHHHHH-----HH
Q 013824 198 TLLPRLNPRNL-NGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTL-----VE 271 (436)
Q Consensus 198 ~L~~RL~~~~~-~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~~LKr~L-----~~ 271 (436)
+|+.-+++..+ ......||. +++.++...++.++.-....-+.|.+.+..+...+-...+.+.-.|++.+ ..
T Consensus 173 eI~~~i~~~~G~elp~f~p~~--afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~ 250 (295)
T PF01031_consen 173 EIRTAIRNSRGRELPGFVPES--AFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQL 250 (295)
T ss_dssp HHHHHHHH--S-SSS-SCCHH--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccchhHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHH
Confidence 34444443333 234566776 89999998888888766666666655555554443333444433444433 23
Q ss_pred HHHHHHHHHHHHHHHhcCc
Q 013824 272 LSSRAGALRQMLLDLLEDP 290 (436)
Q Consensus 272 l~~~v~~vre~L~~LL~dd 290 (436)
+++...+..+.|+.+.+.+
T Consensus 251 l~~~~~~a~~~i~~li~~E 269 (295)
T PF01031_consen 251 LEECREPAKEMIENLIDME 269 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5666677777777777644
No 69
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.75 E-value=1.3e+03 Score=27.66 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013824 258 ILEQLRISKQTLVELSSRAGALRQMLLDL 286 (436)
Q Consensus 258 ~L~~L~~LKr~L~~l~~~v~~vre~L~~L 286 (436)
....+..+|++...+++.|..+++....-
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~ 391 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNE 391 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34557777777777777777777776333
No 70
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=22.74 E-value=5.8e+02 Score=23.10 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013824 262 LRISKQTLVELSSRAGALRQMLLDLLE 288 (436)
Q Consensus 262 L~~LKr~L~~l~~~v~~vre~L~~LL~ 288 (436)
|-.+...-.........++++-++|+.
T Consensus 30 l~~l~~~~~~Vs~kT~~l~~~ce~Ll~ 56 (157)
T PF04136_consen 30 LDELQEQYNSVSEKTNSLHEACEQLLE 56 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333334444444444444444443
No 71
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.61 E-value=6.7e+02 Score=26.49 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=10.6
Q ss_pred HHHHHhhHhhhhh
Q 013824 365 NLSSRRLEVSRVE 377 (436)
Q Consensus 365 ~Ld~~rN~imkl~ 377 (436)
.+.+-+|+|-|+|
T Consensus 306 ~~Es~qtRisklE 318 (395)
T PF10267_consen 306 VMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHH
Confidence 4566799999998
No 72
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=22.27 E-value=1.8e+02 Score=23.88 Aligned_cols=27 Identities=11% Similarity=-0.137 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHhccCCC
Q 013824 376 VELLLQVGAFCVAVGALIAGIFGMNLK 402 (436)
Q Consensus 376 l~l~LTIiS~if~p~TfIAGiFGMNf~ 402 (436)
.|.+|++++.++.....+.+++..++.
T Consensus 4 ~E~iL~~Ig~il~il~~~~~l~~~~~~ 30 (100)
T PF13273_consen 4 AEKILGWIGGILGILFGFFGLLIGFFG 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466788888888766554444444443
No 73
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.02 E-value=1.5e+02 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013824 262 LRISKQTLVELSSRAGALRQMLLDL 286 (436)
Q Consensus 262 L~~LKr~L~~l~~~v~~vre~L~~L 286 (436)
+....+.+..+++.+..+++-+..+
T Consensus 27 v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 27 VTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555444
No 74
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=21.92 E-value=9.8e+02 Score=25.45 Aligned_cols=33 Identities=6% Similarity=0.120 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhHhccCCCCCCCCCchHHHHHHH
Q 013824 380 LQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTA 417 (436)
Q Consensus 380 LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~gF~~v~~ 417 (436)
.+++-++|.....+.++||.= -.+.++..++++
T Consensus 211 ~~l~lL~~~lviC~~~l~gl~-----r~Sr~~li~~s~ 243 (418)
T cd07912 211 AYLGLLSLLLVICLVLLVGLA-----RHSRCLLIVFSV 243 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhcchHHHHHHH
Confidence 444555555566666788863 345666654443
No 75
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=21.73 E-value=6.7e+02 Score=26.09 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=33.9
Q ss_pred HHHHhhHhhhhhh-------hHHHHHHHHHHHHHHHhHhccCCCCCCCCCchHHHHHHHHHHHHHH
Q 013824 366 LSSRRLEVSRVEL-------LLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAV 424 (436)
Q Consensus 366 Ld~~rN~imkl~l-------~LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~gF~~v~~~mv~~~v 424 (436)
-|.|+|++.++-. ..+.++-+|+..++|-|+|=. .+..+.-|..|++++++....++
T Consensus 210 F~~RQ~eL~~lv~~~ne~L~~f~~~aPlf~f~a~iN~~Yi~--s~F~~~~p~~y~i~li~~l~a~i 273 (353)
T PF03268_consen 210 FSHRQIELFELVNFANESLSSFMTFAPLFCFYALINAVYIV--SSFFSSVPLLYFICLIFNLIAII 273 (353)
T ss_pred HhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh--hhhccCCchHHHHHHHHHHHHHH
Confidence 3555566554322 245566777777888888843 22344667777777766654444
No 76
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.57 E-value=3.9e+02 Score=20.73 Aligned_cols=6 Identities=50% Similarity=0.938 Sum_probs=2.3
Q ss_pred HHHHHh
Q 013824 390 GALIAG 395 (436)
Q Consensus 390 ~TfIAG 395 (436)
+++|+|
T Consensus 59 GaiI~~ 64 (71)
T PF10779_consen 59 GAIITA 64 (71)
T ss_pred HHHHHH
Confidence 333333
No 77
>PRK09109 motC flagellar motor protein; Reviewed
Probab=21.52 E-value=1.2e+02 Score=29.64 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHh--ccCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 013824 380 LQVGAFCVAVGALIAGIF--GMNLKSYLEEHVFAFWLTTAGIIVGAVMA 426 (436)
Q Consensus 380 LTIiS~if~p~TfIAGiF--GMNf~~~~Ee~~~gF~~v~~~mv~~~v~~ 426 (436)
.|++.++++.+.++.|++ |=|+...+ ++.++.+|.|++++..++.
T Consensus 4 ~t~iG~~~~~~~v~~~~~~~gg~~~~~~--~~~~~lIV~Ggt~~a~~i~ 50 (246)
T PRK09109 4 LSLIGLILAFVAIIGGQVLEGGHLGSLL--NGPAFLIVIGGTLGAVLLQ 50 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 678888888888888866 44444333 4677888887777665543
No 78
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=21.44 E-value=4.5e+02 Score=21.36 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=14.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHH
Q 013824 405 LEEHVFAFWLTTAGIIVGAVMA 426 (436)
Q Consensus 405 ~Ee~~~gF~~v~~~mv~~~v~~ 426 (436)
.-..|.|||...-|.+.+-+++
T Consensus 41 ~~GfPlgfw~aaQGsi~~fviL 62 (81)
T PF13937_consen 41 FGGFPLGFWFAAQGSIIVFVIL 62 (81)
T ss_pred eCCCChHHHHHHHhHHHHHHHH
Confidence 3368999998886665444433
No 79
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=21.39 E-value=2.9e+02 Score=25.26 Aligned_cols=55 Identities=7% Similarity=0.001 Sum_probs=30.9
Q ss_pred hhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCCCCCCCchHHHHHHHHHHHHHHH
Q 013824 370 RLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVM 425 (436)
Q Consensus 370 rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~~~Ee~~~gF~~v~~~mv~~~v~ 425 (436)
-|++++-+...+-+=+.+++++|++..|=. -....+=-+|..++++++.+.++++
T Consensus 58 s~RM~rRm~~~~GiP~~lG~~~f~~~y~l~-~~~~~dvP~~~~~~~S~~~Fg~gll 112 (153)
T PF11947_consen 58 SNRMLRRMAVFVGIPTALGVAVFVVFYYLK-SRQIVDVPPWAVLLVSLVFFGLGLL 112 (153)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHH-hccccccCchHHHHHHHHHHHHHHH
Confidence 455555544566666666677776554433 2333444456666666666655543
No 80
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=21.36 E-value=1.7e+02 Score=20.38 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=13.7
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhc
Q 013824 411 AFWL-TTAGIIVGAVMAFLPHVLVSE 435 (436)
Q Consensus 411 gF~~-v~~~mv~~~v~~~~~~~~~~~ 435 (436)
-||. ++.......+++.++|+++.|
T Consensus 8 dfylc~l~~llflv~imliif~f~le 33 (43)
T PF11395_consen 8 DFYLCFLSFLLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 334444555566667776655
No 81
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=21.30 E-value=1e+02 Score=32.07 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHhHhccCCC
Q 013824 379 LLQVGAFCVAVGALIAGIFGMNLK 402 (436)
Q Consensus 379 ~LTIiS~if~p~TfIAGiFGMNf~ 402 (436)
+-|++++.+-+.-...=+.||++-
T Consensus 38 kRT~~tllvHs~LPlgY~~~~~~~ 61 (358)
T PF10272_consen 38 KRTSATLLVHSCLPLGYFIGMCFF 61 (358)
T ss_pred hHhHHHHHHHHHHHHHHHhheeEe
Confidence 344444444433333336677764
No 82
>PRK03557 zinc transporter ZitB; Provisional
Probab=21.21 E-value=1e+02 Score=31.06 Aligned_cols=6 Identities=33% Similarity=0.971 Sum_probs=2.5
Q ss_pred CCchHH
Q 013824 407 EHVFAF 412 (436)
Q Consensus 407 e~~~gF 412 (436)
++||||
T Consensus 78 ~hpyG~ 83 (312)
T PRK03557 78 RHTFGW 83 (312)
T ss_pred CCCCch
Confidence 344444
No 83
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=21.16 E-value=2e+02 Score=20.82 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=7.3
Q ss_pred HHHHHHhHhcc
Q 013824 389 VGALIAGIFGM 399 (436)
Q Consensus 389 p~TfIAGiFGM 399 (436)
.+.++++.+|+
T Consensus 10 vGg~l~~~lg~ 20 (48)
T PF04226_consen 10 VGGWLFGLLGI 20 (48)
T ss_pred HHHHHHHHhcc
Confidence 46666777776
No 84
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.84 E-value=6.1e+02 Score=22.98 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013824 329 EIEMLLENYLQRCESCHGQSERLLDSAKEMEDSI 362 (436)
Q Consensus 329 evE~LLE~Y~r~vd~i~~~le~L~e~i~~ted~i 362 (436)
.+|.++..++++++++.+..+.+.+.++.+++..
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKL 76 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788889998888888888888777766554
No 85
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.63 E-value=3.1e+02 Score=26.53 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=4.1
Q ss_pred hhHhhhh
Q 013824 370 RLEVSRV 376 (436)
Q Consensus 370 rN~imkl 376 (436)
+++++|.
T Consensus 5 k~~~~~~ 11 (248)
T PF11368_consen 5 KKRILRF 11 (248)
T ss_pred HHHHHHH
Confidence 4466665
No 86
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.58 E-value=1.3e+02 Score=26.48 Aligned_cols=25 Identities=4% Similarity=-0.188 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Q 013824 409 VFAFWLTTAGIIVGAVMAFLPHVLV 433 (436)
Q Consensus 409 ~~gF~~v~~~mv~~~v~~~~~~~~~ 433 (436)
+.-.++++|+|+.+.+++.+++|++
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHHHHHHH
Confidence 3456777777765555555444443
No 87
>PRK04406 hypothetical protein; Provisional
Probab=20.56 E-value=2.5e+02 Score=22.38 Aligned_cols=25 Identities=4% Similarity=0.106 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013824 262 LRISKQTLVELSSRAGALRQMLLDL 286 (436)
Q Consensus 262 L~~LKr~L~~l~~~v~~vre~L~~L 286 (436)
+....+.+..+++.++.+++-+..+
T Consensus 34 v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 34 LSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666666666666555543
No 88
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.33 E-value=3.9e+02 Score=27.43 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013824 261 QLRISKQTLVELSSRAGALRQMLLDLL 287 (436)
Q Consensus 261 ~L~~LKr~L~~l~~~v~~vre~L~~LL 287 (436)
+|-.+-++|.+|+|+++.++..|.++.
T Consensus 290 ElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 290 ELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444566666667776666666654
No 89
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=20.30 E-value=1.4e+02 Score=29.57 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=12.5
Q ss_pred HHHHHHHHHhHhccCCCC
Q 013824 386 CVAVGALIAGIFGMNLKS 403 (436)
Q Consensus 386 if~p~TfIAGiFGMNf~~ 403 (436)
.++++++++.+|+|--+.
T Consensus 49 ~i~~~~Ll~~v~t~~~~~ 66 (284)
T PF12805_consen 49 TIGFATLLVAVYTMAGPS 66 (284)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 345567778888887655
No 90
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.25 E-value=4.3e+02 Score=23.87 Aligned_cols=68 Identities=7% Similarity=-0.080 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc---cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013824 214 MPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVL---PNRLTADILEQLRISKQTLVELSSRAGALRQMLLD 285 (436)
Q Consensus 214 LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L---~~~v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~ 285 (436)
|+=|-+ +.++.+.+.+..++..|...+..--.+| .... ..+-+.|..+.+++..|+..+...|..++.
T Consensus 44 LT~EQQ---a~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~-~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 44 LTTEQQ---AAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTAN-PPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 4555555566666666666554333333 2222 223467888999999999988877765543
No 91
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=20.23 E-value=95 Score=32.54 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=24.2
Q ss_pred HhhHhhhhhhhHHHHHHHHHHHHHHHh
Q 013824 369 RRLEVSRVELLLQVGAFCVAVGALIAG 395 (436)
Q Consensus 369 ~rN~imkl~l~LTIiS~if~p~TfIAG 395 (436)
-+|++.|+-++....+++=+++|||+|
T Consensus 346 ~~n~~~rvllv~~l~nlGs~igt~~~~ 372 (380)
T TIGR00261 346 FKNKVFRVLLVAILVNLGSTIGTIYGL 372 (380)
T ss_pred HhcchHHHHHHHHHhhhHHHHHHHHHH
Confidence 479999998888888999999999998
No 92
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=20.08 E-value=6.1e+02 Score=22.36 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=4.3
Q ss_pred HHHHhHhccC
Q 013824 391 ALIAGIFGMN 400 (436)
Q Consensus 391 TfIAGiFGMN 400 (436)
+|++|+||=.
T Consensus 92 ~~~~~~~~~~ 101 (142)
T PF11712_consen 92 VFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHH
Confidence 3444444433
Done!