Your job contains 1 sequence.
>013825
MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI
SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP
APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV
LFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQ
GKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP
ESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLC
CSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHV
VTRKGGFFNHPTARLQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013825
(436 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2160359 - symbol:AT5G07710 species:3702 "Arabi... 836 3.5e-122 2
TAIR|locus:2019100 - symbol:AT1G74390 species:3702 "Arabi... 1135 3.9e-115 1
TAIR|locus:2163208 - symbol:AT5G61390 species:3702 "Arabi... 827 1.7e-82 1
TAIR|locus:2135302 - symbol:AT4G39810 species:3702 "Arabi... 665 2.5e-65 1
UNIPROTKB|Q10384 - symbol:MT2247 "Uncharacterized protein... 144 1.3e-06 1
TIGR_CMR|CJE_0502 - symbol:CJE_0502 "exonuclease, DNA pol... 134 1.8e-06 1
UNIPROTKB|Q74DD3 - symbol:GSU1383 "3'-to-5' exonuclease, ... 119 2.8e-05 1
TIGR_CMR|GSU_1383 - symbol:GSU_1383 "exonuclease" species... 119 2.8e-05 1
UNIPROTKB|Q9KPX9 - symbol:VC_2233 "DNA polymerase III, ep... 124 3.3e-05 1
TIGR_CMR|VC_2233 - symbol:VC_2233 "DNA polymerase III, ep... 124 3.3e-05 1
TIGR_CMR|BA_3672 - symbol:BA_3672 "DNA polymerase III, ep... 119 0.00023 1
UNIPROTKB|P03007 - symbol:dnaQ "DNA polymerase III, epsil... 115 0.00035 1
>TAIR|locus:2160359 [details] [associations]
symbol:AT5G07710 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:AB010070 HOGENOM:HOG000243435 ProtClustDB:CLSN2682233
IPI:IPI00526286 RefSeq:NP_196388.1 UniGene:At.32685
ProteinModelPortal:Q9FLR0 SMR:Q9FLR0 EnsemblPlants:AT5G07710.1
GeneID:830664 KEGG:ath:AT5G07710 TAIR:At5g07710 eggNOG:NOG242463
InParanoid:Q9FLR0 OMA:HIATEIN PhylomeDB:Q9FLR0
Genevestigator:Q9FLR0 Uniprot:Q9FLR0
Length = 468
Score = 836 (299.3 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 177/239 (74%), Positives = 192/239 (80%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M P +DRSEIAFFDVETTVP R GQRFAILEFG+ILVCPKKL EL +Y+TLV+PAD LI
Sbjct: 1 MDP-EDRSEIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLI 58
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
SSLSVRCNGI D VV +P FADIADTV+DILHGRIWAGHNILRFDCARIREAFAEIGR
Sbjct: 59 SSLSVRCNGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQ 118
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
PEPKG IDSL LLTQ+FGRRAGDMKMA+LA YFGLG QTHRSLDDVRMNLEVLKYCATV
Sbjct: 119 PPEPKGAIDSLGLLTQKFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATV 178
Query: 181 LFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPD 239
LFLESSLP NS VSP T SR +S EG N T S + + ++A+ PD
Sbjct: 179 LFLESSLPYAHVDNS-VSPE-TISSRRRIDASREG---NTVTTSVRLPSISENSAAQPD 232
Score = 386 (140.9 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 81/174 (46%), Positives = 116/174 (66%)
Query: 263 LAVTTADQPNPFDMSQLSNQMETQS-LQPDDTMEDKSAPESREMCSTASVSEGSSGYAGF 321
++ +A QP+PF+MS L N+M + + +Q D ME++ S + S E +S + GF
Sbjct: 223 ISENSAAQPDPFNMSVLRNEMASDNHIQSDILMEEEQIEPSDVVAS-----ENTSDHEGF 277
Query: 322 MEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRP 381
+ PD +SLS+I + P +PGSQ+ K+KLLH D LQL CS LKIRFG++ KF+D GR
Sbjct: 278 LTPDAMSLSNIKAMLFPFYPGSQMMKLKLLHGDSPLQLYCSYLKIRFGVNGKFLDNTGRR 337
Query: 382 RLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKGGFFNHPTARL 435
RL+FVVD++ SL ++L+AC+ +KL DSGS+SEW VV GF N+P AR+
Sbjct: 338 RLNFVVDLNPSLYSILEACDSNAQKLSVDSGSTSEWNPVVNPMKGFVNYPNARI 391
>TAIR|locus:2019100 [details] [associations]
symbol:AT1G74390 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0016740
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:AC011765 HOGENOM:HOG000243435 EMBL:AY099717
EMBL:BT000288 IPI:IPI00527477 PIR:F96772 RefSeq:NP_177579.1
UniGene:At.34885 ProteinModelPortal:Q9CA74 SMR:Q9CA74 PRIDE:Q9CA74
EnsemblPlants:AT1G74390.1 GeneID:843780 KEGG:ath:AT1G74390
TAIR:At1g74390 eggNOG:NOG293656 OMA:TECSESD PhylomeDB:Q9CA74
ProtClustDB:CLSN2914563 ArrayExpress:Q9CA74 Genevestigator:Q9CA74
Uniprot:Q9CA74
Length = 506
Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
Identities = 239/430 (55%), Positives = 304/430 (70%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
+RSEIAFFD+ET VPT+ G+ FAILEFGAILVCP++LEEL++YSTLVRP D LIS+L+
Sbjct: 9 ERSEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTK 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
R +GIT D V+S+ TF++IAD V+DILHGRIWAGHNI+RFDC RIREAFAEIG PEPK
Sbjct: 69 RRSGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLSPPEPK 128
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
TIDSL+LL+Q+FG+RAGDMKMASLATYFGLG Q HRSLDDVRMNLEV+KYCATVLFLES
Sbjct: 129 ATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATVLFLES 188
Query: 186 SLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEI 245
S+PDI T SW SP + R+RSN K G ++ ++ SS K + +S S D +
Sbjct: 189 SVPDILTDMSWFSPRKSPRTRSNGKLVANGVRESSTSSSSSPKTDPSS--SSVDATIVKN 246
Query: 246 HPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREM 305
HPI SL+T+ +E D+ ++ D +P D++ L ++ +LQ D E K+ + E
Sbjct: 247 HPIVSLLTE-CSESDA----SSYDIEDPIDITTLIGKLRIGTLQTDAAEEAKTVRQQDE- 300
Query: 306 CSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLK 365
S S + + F+ +EVS+SSI +VP + GS ++KL HND L LC LK
Sbjct: 301 -SPPSPDSDAKDES-FLGVNEVSVSSIRASLVPFYRGSL--RMKLFHNDTPLHLCWHSLK 356
Query: 366 IRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKG 425
+RFGIS KFVD AGRP+L+ +VD LC +LDA + L DS ++S+WR V RK
Sbjct: 357 VRFGISRKFVDHAGRPKLNIIVDAPLDLCKILDAVDAAAHNLPTDSSTNSDWRPTVIRKE 416
Query: 426 GFFNHPTARL 435
GF N+PTARL
Sbjct: 417 GFANYPTARL 426
>TAIR|locus:2163208 [details] [associations]
symbol:AT5G61390 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CP002688 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:BT026378
IPI:IPI00535115 RefSeq:NP_200947.3 UniGene:At.29105
ProteinModelPortal:Q0V842 PRIDE:Q0V842 EnsemblPlants:AT5G61390.1
GeneID:836260 KEGG:ath:AT5G61390 TAIR:At5g61390 eggNOG:NOG265891
HOGENOM:HOG000243435 InParanoid:Q0V842 OMA:YAILEFG PhylomeDB:Q0V842
ProtClustDB:CLSN2682233 Genevestigator:Q0V842 Uniprot:Q0V842
Length = 487
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 181/315 (57%), Positives = 212/315 (67%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P +DRSEIAFFDVETT+P R GQ +AILEFG+ILVCPKKL EL NYS LVRPA+ LI+
Sbjct: 9 PAEDRSEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLITP 68
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
SV+CNGI + V S+ TFADIADTV+DILHGRIWAGHNIL+FDC RIREAFAEIGR P
Sbjct: 69 RSVKCNGIKREDVESALTFADIADTVYDILHGRIWAGHNILKFDCPRIREAFAEIGRDPP 128
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLF 182
EPKGTIDSLALLTQRFGRRAGDMKMA+LATYFGLG QTHRSLDDVRMN EVLKYCATVLF
Sbjct: 129 EPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLKYCATVLF 188
Query: 183 LESSLPDIFTVNS--WVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQ 240
LESSLPD NS +P ++R R K SP L +P+ + EN +
Sbjct: 189 LESSLPDELIENSVTTTTPETSSRRRRTIKKSP------LQSPTDQQTGENMTTI----- 237
Query: 241 GKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP 300
PI S V+ A+ D T ++ P ++ Q ME + Q +T+ +
Sbjct: 238 ------PILSFVSSAEAQTDPFDMSTLRNEIAP-EVLQSDVPMEEEQNQQSETVASEGTG 290
Query: 301 ESREMCSTASVSEGS 315
+ +S S
Sbjct: 291 DQEGFMELDKISVSS 305
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 86/194 (44%), Positives = 119/194 (61%)
Query: 247 PIFSLVTQGTAE---VDSVLA-VTTAD-QPNPFDMSQLSNQMETQSLQPDDTMEDKSAPE 301
P+ S Q T E +L+ V++A+ Q +PFDMS L N++ + LQ D ME+ E
Sbjct: 221 PLQSPTDQQTGENMTTIPILSFVSSAEAQTDPFDMSTLRNEIAPEVLQSDVPMEE----E 276
Query: 302 SREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCC 361
+ T + SEG+ GFME D++S+SSI VPL+ GSQ K++L D LQL C
Sbjct: 277 QNQQSETVA-SEGTGDQEGFMELDKISVSSIRATHVPLYDGSQTMKLQLFLGDRPLQLHC 335
Query: 362 SRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVV 421
RLK+RFGI+ KF+D+AGR RL+FV+D+ SLC VL C+ + + DSGS S+W +V
Sbjct: 336 PRLKVRFGINGKFMDKAGRRRLNFVIDLYPSLCNVLQECDSAAQTISVDSGSGSDWNPLV 395
Query: 422 TRKGGFFNHPTARL 435
GF N PTAR+
Sbjct: 396 IPMKGFLNCPTARI 409
>TAIR|locus:2135302 [details] [associations]
symbol:AT4G39810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CP002687 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 IPI:IPI00537236
RefSeq:NP_195691.4 UniGene:At.54662 ProteinModelPortal:F4JJ23
SMR:F4JJ23 EnsemblPlants:AT4G39810.1 GeneID:830140
KEGG:ath:AT4G39810 OMA:AGHNIRR Uniprot:F4JJ23
Length = 255
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 134/244 (54%), Positives = 172/244 (70%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+EI FFD+ET VP + GQ F ILEFGAI+VCPKKLEEL +++TL++P D ++S S R
Sbjct: 8 NEIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRS 67
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+GIT V ++P+F D+A+ + +L+GRIWAGHNI RFDC RI+EAFAEIG+ APEP G
Sbjct: 68 DGITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGI 127
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 187
IDSL LL+ +FG+RAG+MKMASLA YFGLG Q HRSLDDVRMNLEVLK+CATVLFLES+L
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTL 187
Query: 188 PDIFTVNSW-VSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEIH 246
P+ W S TRSR N + + + S S + +N N QG + +
Sbjct: 188 PNHLE-GKWHTSSKIMTRSRRNYQIAQR--AMPYSKGSLEKMTQNVKNLLSKAQGNQTLQ 244
Query: 247 PIFS 250
+ +
Sbjct: 245 SLIN 248
>UNIPROTKB|Q10384 [details] [associations]
symbol:MT2247 "Uncharacterized protein Rv2191/MT2247"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
InterPro:IPR000305 Pfam:PF00929 Pfam:PF01541 GO:GO:0005829
GO:GO:0005886 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006260 EMBL:BX842579
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 eggNOG:COG0322
SMART:SM00465 SUPFAM:SSF82771 PROSITE:PS50164 GO:GO:0003887
KO:K02342 TIGRFAMs:TIGR00573 PIR:H70783 RefSeq:NP_216707.1
RefSeq:NP_336719.1 RefSeq:YP_006515611.1 ProteinModelPortal:Q10384
SMR:Q10384 EnsemblBacteria:EBMYCT00000000128
EnsemblBacteria:EBMYCT00000072423 GeneID:13318880 GeneID:887265
GeneID:924179 KEGG:mtc:MT2247 KEGG:mtu:Rv2191 KEGG:mtv:RVBD_2191
PATRIC:18126696 TubercuList:Rv2191 HOGENOM:HOG000021021 OMA:PYNRRSR
ProtClustDB:PRK07883 Uniprot:Q10384
Length = 645
Score = 144 (55.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 51/167 (30%), Positives = 76/167 (45%)
Query: 14 DVETTVPTRPGQRF----AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
D+ETT G AI E GA+ VC + L ++TLV P I VR G
Sbjct: 47 DLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQHS--IPPQIVRLTG 102
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
IT V ++PT + F+ + HN FD +R A P+P+ +
Sbjct: 103 ITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ-VLC 160
Query: 130 SLALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
++ L + R A +++A+LA F + THR+LDD R ++VL
Sbjct: 161 TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>TIGR_CMR|CJE_0502 [details] [associations]
symbol:CJE_0502 "exonuclease, DNA polymerase III, epsilon
subunit family" species:195099 "Campylobacter jejuni RM1221"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573 HOGENOM:HOG000258615
RefSeq:YP_178520.1 ProteinModelPortal:Q5HW15 STRING:Q5HW15
GeneID:3231263 KEGG:cjr:CJE0502 PATRIC:20042716 OMA:ARLKHQD
ProtClustDB:PRK08517 BioCyc:CJEJ195099:GJC0-512-MONOMER
Uniprot:Q5HW15
Length = 233
Score = 134 (52.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 50/179 (27%), Positives = 83/179 (46%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 42 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 96
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 97 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 149
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 150 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 204
>UNIPROTKB|Q74DD3 [details] [associations]
symbol:GSU1383 "3'-to-5' exonuclease, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
HOGENOM:HOG000258615 RefSeq:NP_952436.1 ProteinModelPortal:Q74DD3
GeneID:2687906 KEGG:gsu:GSU1383 PATRIC:22025541 OMA:LINVNAP
ProtClustDB:CLSK763133 BioCyc:GSUL243231:GH27-1334-MONOMER
Uniprot:Q74DD3
Length = 181
Score = 119 (46.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 47/169 (27%), Positives = 77/169 (45%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVR--PADPELISSLSVRCN 68
A DVETT PG ++E A+LV ++ + +S+L+R A P +S + +
Sbjct: 8 AAIDVETT-GLFPGYGDRVVEVAAVLVDEGQI--VSEFSSLIRVTKAIPRHVSMI----H 60
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT D + P ++ + D + + HN RFD A +R F +G
Sbjct: 61 GITNDMLADQPLPEEVYPALGDFIGTALLVAHNA-RFDLAFLRHEFGRLGLSLNSRSAC- 118
Query: 129 DSLALLTQRFGRRAGDMKMASLATY-FGL---GQQTHRSLDDVRMNLEV 173
+L L +R D ++ ++ + FG G + HR+LDD R+ V
Sbjct: 119 -TLELARRRLPELT-DHRLETVYQHLFGAVPEGTRCHRALDDARLTARV 165
>TIGR_CMR|GSU_1383 [details] [associations]
symbol:GSU_1383 "exonuclease" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
[GO:0016797 "exonuclease activity, active with either ribo- or
deoxyribonucleic acids and producing 3'-phosphomonoesters"
evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
KO:K02342 TIGRFAMs:TIGR00573 HOGENOM:HOG000258615
RefSeq:NP_952436.1 ProteinModelPortal:Q74DD3 GeneID:2687906
KEGG:gsu:GSU1383 PATRIC:22025541 OMA:LINVNAP ProtClustDB:CLSK763133
BioCyc:GSUL243231:GH27-1334-MONOMER Uniprot:Q74DD3
Length = 181
Score = 119 (46.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 47/169 (27%), Positives = 77/169 (45%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVR--PADPELISSLSVRCN 68
A DVETT PG ++E A+LV ++ + +S+L+R A P +S + +
Sbjct: 8 AAIDVETT-GLFPGYGDRVVEVAAVLVDEGQI--VSEFSSLIRVTKAIPRHVSMI----H 60
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT D + P ++ + D + + HN RFD A +R F +G
Sbjct: 61 GITNDMLADQPLPEEVYPALGDFIGTALLVAHNA-RFDLAFLRHEFGRLGLSLNSRSAC- 118
Query: 129 DSLALLTQRFGRRAGDMKMASLATY-FGL---GQQTHRSLDDVRMNLEV 173
+L L +R D ++ ++ + FG G + HR+LDD R+ V
Sbjct: 119 -TLELARRRLPELT-DHRLETVYQHLFGAVPEGTRCHRALDDARLTARV 165
>UNIPROTKB|Q9KPX9 [details] [associations]
symbol:VC_2233 "DNA polymerase III, epsilon subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR006309 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0009360
KO:K02342 ProtClustDB:PRK05711 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:ILAREKH HSSP:P03007 PIR:F82101
RefSeq:NP_231864.1 ProteinModelPortal:Q9KPX9 SMR:Q9KPX9
DNASU:2613155 GeneID:2613155 KEGG:vch:VC2233 PATRIC:20083511
Uniprot:Q9KPX9
Length = 247
Score = 124 (48.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 58/216 (26%), Positives = 100/216 (46%)
Query: 10 IAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
I D ETT R G + I+E GA+ + +KL H + ++P D + I ++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRH-FHVYLKP-DRD-IQLEAI 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE----IGRPA 121
+GIT + + P + D+ + D + G HN FD + FA+ IG+ +
Sbjct: 69 EVHGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNA-PFDVGFMDYEFAKLGGAIGKTS 127
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
K T D+LA+ + F + ++ + L +G+ +HR+L ++ E+L A V
Sbjct: 128 DFCKVT-DTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEIL---ADVY 180
Query: 182 FL----ESSLP-DIFTVNSW-VSPNATTRSRSNAKS 211
L ++SL T NS +S + R+RS K+
Sbjct: 181 LLMTGGQTSLQFSSVTQNSGELSAESLKRARSERKA 216
>TIGR_CMR|VC_2233 [details] [associations]
symbol:VC_2233 "DNA polymerase III, epsilon subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0009360 KO:K02342 ProtClustDB:PRK05711 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:ILAREKH HSSP:P03007 PIR:F82101
RefSeq:NP_231864.1 ProteinModelPortal:Q9KPX9 SMR:Q9KPX9
DNASU:2613155 GeneID:2613155 KEGG:vch:VC2233 PATRIC:20083511
Uniprot:Q9KPX9
Length = 247
Score = 124 (48.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 58/216 (26%), Positives = 100/216 (46%)
Query: 10 IAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
I D ETT R G + I+E GA+ + +KL H + ++P D + I ++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRH-FHVYLKP-DRD-IQLEAI 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE----IGRPA 121
+GIT + + P + D+ + D + G HN FD + FA+ IG+ +
Sbjct: 69 EVHGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNA-PFDVGFMDYEFAKLGGAIGKTS 127
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
K T D+LA+ + F + ++ + L +G+ +HR+L ++ E+L A V
Sbjct: 128 DFCKVT-DTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEIL---ADVY 180
Query: 182 FL----ESSLP-DIFTVNSW-VSPNATTRSRSNAKS 211
L ++SL T NS +S + R+RS K+
Sbjct: 181 LLMTGGQTSLQFSSVTQNSGELSAESLKRARSERKA 216
>TIGR_CMR|BA_3672 [details] [associations]
symbol:BA_3672 "DNA polymerase III, epsilon subunit,
putative" species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
HSSP:P03007 RefSeq:NP_845935.1 RefSeq:YP_020306.1
RefSeq:YP_029660.1 ProteinModelPortal:Q81Y85 DNASU:1089228
EnsemblBacteria:EBBACT00000011122 EnsemblBacteria:EBBACT00000018521
EnsemblBacteria:EBBACT00000024461 GeneID:1089228 GeneID:2815455
GeneID:2848298 KEGG:ban:BA_3672 KEGG:bar:GBAA_3672 KEGG:bat:BAS3404
HOGENOM:HOG000095225 OMA:KKYVLTE ProtClustDB:PRK06807
BioCyc:BANT260799:GJAJ-3466-MONOMER
BioCyc:BANT261594:GJ7F-3577-MONOMER Uniprot:Q81Y85
Length = 315
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 35/139 (25%), Positives = 62/139 (44%)
Query: 42 LEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHN 101
+++ +Y RP P+ I SL+ GIT V +PT ++ LH + HN
Sbjct: 41 VDQFVSYVNPKRPI-PDRIMSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN 95
Query: 102 ILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTH 161
FD ++ +G PEPK + L +++ + A + K+ +L G+ +H
Sbjct: 96 A-SFDMRFLKSNVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSH 152
Query: 162 RSLDDVRMNLEVLKYCATV 180
+ DD V + CA++
Sbjct: 153 NAFDDCITCAAVYQKCASI 171
>UNIPROTKB|P03007 [details] [associations]
symbol:dnaQ "DNA polymerase III, epsilon subunit"
species:83333 "Escherichia coli K-12" [GO:0005622 "intracellular"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004527 "exonuclease activity" evidence=IEA;IDA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA]
InterPro:IPR006054 InterPro:IPR006055 InterPro:IPR006309
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005622 EMBL:U70214 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0045004 EMBL:X04027 EMBL:K00985 PIR:A64746 RefSeq:NP_414751.1
RefSeq:YP_488512.1 PDB:1J53 PDB:1J54 PDB:1MGZ PDB:2GUI PDB:2IDO
PDB:2XY8 PDBsum:1J53 PDBsum:1J54 PDBsum:1MGZ PDBsum:2GUI
PDBsum:2IDO PDBsum:2XY8 ProteinModelPortal:P03007 SMR:P03007
DIP:DIP-9462N IntAct:P03007 MINT:MINT-1222832 SWISS-2DPAGE:P03007
EnsemblBacteria:EBESCT00000002781 EnsemblBacteria:EBESCT00000002782
EnsemblBacteria:EBESCT00000016960 GeneID:12933127 GeneID:946441
KEGG:ecj:Y75_p0206 KEGG:eco:b0215 PATRIC:32115543 EchoBASE:EB0239
EcoGene:EG10243 HOGENOM:HOG000258616 KO:K02342 OMA:HGITNEF
ProtClustDB:PRK05711 BioCyc:EcoCyc:EG10243-MONOMER
BioCyc:ECOL316407:JW0205-MONOMER BioCyc:MetaCyc:EG10243-MONOMER
ChEMBL:CHEMBL1075047 EvolutionaryTrace:P03007 Genevestigator:P03007
TIGRFAMs:TIGR00573 TIGRFAMs:TIGR01406 Uniprot:P03007
Length = 243
Score = 115 (45.5 bits), Expect = 0.00035, P = 0.00035
Identities = 45/168 (26%), Positives = 77/168 (45%)
Query: 14 DVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
D ETT + G + I+E GA+ V ++L +N+ ++P L+ + +GI
Sbjct: 12 DTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTG-NNFHVYLKP--DRLVDPEAFGVHGI 68
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG---T 127
+ ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 ADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTFCKV 127
Query: 128 IDSLALLTQRFGRRAGDMKMASLATY-FGLGQQT-HRSLDDVRMNLEV 173
DSLA+ + F + + A A Y ++T H +L D ++ EV
Sbjct: 128 TDSLAVARKMFPGKRNSLD-ALCARYEIDNSKRTLHGALLDAQILAEV 174
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 436 436 0.00088 118 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 615 (65 KB)
Total size of DFA: 254 KB (2136 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.66u 0.10s 42.76t Elapsed: 00:00:04
Total cpu time: 42.66u 0.10s 42.76t Elapsed: 00:00:04
Start: Mon May 20 15:50:13 2013 End: Mon May 20 15:50:17 2013