BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013825
(436 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225457353|ref|XP_002281793.1| PREDICTED: uncharacterized protein LOC100265514 [Vitis vinifera]
Length = 497
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 298/435 (68%), Positives = 345/435 (79%), Gaps = 16/435 (3%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
MGP ++RSEIAFFDVETTVPTR GQ FAILEFGAILVCP+KL EL +YSTLVRP D L+
Sbjct: 1 MGPGEERSEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLV 60
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
SSLSVRCNGIT DAVVS+P F DIAD V+DILHGRIWAGHNILRFDCARIREAFAEIGRP
Sbjct: 61 SSLSVRCNGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
APEPKG+IDSLALLTQRFGRRAGDMKMA+LATYFGLGQQTHRSLDDVRMNLEVLKYCATV
Sbjct: 121 APEPKGSIDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
Query: 181 LFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQ 240
LFLESSLPDIFT NSWVSPNA TRSRSN K+SP G + N+STPSS KFEN ++
Sbjct: 181 LFLESSLPDIFTTNSWVSPNAVTRSRSNGKASPVGMNLNMSTPSSSIKFEN--HSISSPS 238
Query: 241 GKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP 300
+ I +LV T +QP+PF++ LS+++E +SL+PD +E+K
Sbjct: 239 THSSMEGILNLVEPNT------------NQPDPFNLGALSSEIERESLKPDYALEEKPVT 286
Query: 301 ESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLC 360
ES EM ST + S+ YAGF++P EVS++SIS VPL+ G+ +++++LHNDV L L
Sbjct: 287 ESLEMLSTTTASQDCCDYAGFLDPAEVSVASISASFVPLYRGT--RRMQILHNDVKLLLH 344
Query: 361 CSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHV 420
C++L++RFGIST+FVD AGRPRLSFVVD S SLC VLDAC+ + KL DSGSSSEWR V
Sbjct: 345 CTQLRVRFGISTRFVDPAGRPRLSFVVDGSPSLCQVLDACDQLAYKLSVDSGSSSEWRPV 404
Query: 421 VTRKGGFFNHPTARL 435
V RK GF N PT RL
Sbjct: 405 VIRKTGFLNTPTIRL 419
>gi|147817752|emb|CAN66660.1| hypothetical protein VITISV_031720 [Vitis vinifera]
Length = 535
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 297/436 (68%), Positives = 346/436 (79%), Gaps = 16/436 (3%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
MGP ++RSEIAFFDVETTVPTR GQ FAILEFGAILVCP+KL EL +YSTLVRP D L+
Sbjct: 1 MGPGEERSEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLV 60
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
SSLSVRCNGIT DAVVS+P F DIAD V+DILHGRIWAGHNILRFDCARIREAFAEIGRP
Sbjct: 61 SSLSVRCNGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
APEPKG+IDSLALLTQRFGRRAGDMKMA+LATYFGLGQQTHRSLDDVRMNLEVLKYCATV
Sbjct: 121 APEPKGSIDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
Query: 181 LFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQ 240
LFLESSLPDIFT NSWVSPNA TRSRSN K+SP G + N+STPSS KFEN ++
Sbjct: 181 LFLESSLPDIFTTNSWVSPNAVTRSRSNGKASPVGMNLNMSTPSSSIKFEN--HSISSPS 238
Query: 241 GKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP 300
+ I +LV T ++P+PF++ LS+++E +SL+PD +E+K
Sbjct: 239 THSSMEGILNLVEPNT------------NRPDPFNLGALSSEIERESLKPDYALEEKPVT 286
Query: 301 ESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLC 360
ES EM ST + S+ YAGF++P EVS++SIS VPL+ G+ +++++LHNDV L L
Sbjct: 287 ESLEMLSTTTASQDCCDYAGFLDPAEVSVASISASFVPLYRGT--RRMQILHNDVKLLLH 344
Query: 361 CSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHV 420
C++L++RFGIST+FVD AGRPRLSFVVD S SLC VLDAC+ + KL DSGSSSEWR V
Sbjct: 345 CTQLRVRFGISTRFVDPAGRPRLSFVVDGSPSLCQVLDACDQLAYKLSVDSGSSSEWRPV 404
Query: 421 VTRKGGFFNHPTARLQ 436
V RK GF N PT RL+
Sbjct: 405 VIRKTGFLNTPTIRLR 420
>gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis]
gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis]
Length = 501
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 292/435 (67%), Positives = 334/435 (76%), Gaps = 14/435 (3%)
Query: 2 GPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELIS 61
GPT +RSEIAFFD+ETTVP RPGQ FAILEFGAILVC +KLEELH+YSTLVRPA+ LIS
Sbjct: 4 GPTDERSEIAFFDLETTVPNRPGQGFAILEFGAILVCSRKLEELHSYSTLVRPANLSLIS 63
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
SVRCNGIT DAVV +PTFA+IAD V++IL+GRIWAGHNI RFDC RIREAFAEIGR
Sbjct: 64 PTSVRCNGITHDAVVLAPTFAEIADIVYEILNGRIWAGHNIQRFDCVRIREAFAEIGRQP 123
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
PE KG ID+LALLT +FGRRAGDMKMASLATYFGLG+QTHRSLDDVRMNLEVLKYCATVL
Sbjct: 124 PENKGIIDTLALLTHKFGRRAGDMKMASLATYFGLGKQTHRSLDDVRMNLEVLKYCATVL 183
Query: 182 FLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQG 241
FLESSLPD F SWVSPNATTRSR N KS E ++ PSS KFEN S A
Sbjct: 184 FLESSLPDAFPEKSWVSPNATTRSRKNGKSPLERPGTDVDAPSSSSKFENISLAG---HE 240
Query: 242 KEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPE 301
E HPI L+T SV + TT Q +PFDM LSN+M T SLQ D TME+KS E
Sbjct: 241 PERSHPIIYLLT-------SVGSNTT--QTDPFDMGTLSNEMTTSSLQQDVTMEEKSLTE 291
Query: 302 SREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCC 361
S EM S +V +G S YAGF+E ++VS+SSI VPLF G+ Q++ LLH DVILQLCC
Sbjct: 292 SSEMPSLVTVRDGGSAYAGFLETEKVSISSIRASFVPLFRGA--QRMVLLHEDVILQLCC 349
Query: 362 SRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVV 421
RL++RFG+STKFVD AGRPRLSFVVD +LC++LD C+ +KL +SGS+S+WR VV
Sbjct: 350 PRLRVRFGLSTKFVDSAGRPRLSFVVDAPPNLCSILDTCDGSAQKLSVESGSTSDWRQVV 409
Query: 422 TRKGGFFNHPTARLQ 436
+RK GF N+P RL
Sbjct: 410 SRKPGFVNYPIVRLH 424
>gi|297733948|emb|CBI15195.3| unnamed protein product [Vitis vinifera]
Length = 447
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 276/435 (63%), Positives = 307/435 (70%), Gaps = 66/435 (15%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
MGP ++RSEIAFFDVETTVPTR GQ FAILEFGAILVCP+KL EL +YSTLVRP D L+
Sbjct: 1 MGPGEERSEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLV 60
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
SSLSVRCNGIT DAVVS+P F DIAD V+DILHGRIWAGHNILRFDCARIREAFAEIGRP
Sbjct: 61 SSLSVRCNGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
APEPKG+IDSLALLTQRFGRRAGDMKMA+LATYFGLGQQTHRSLDDVRMNLEVLKYCATV
Sbjct: 121 APEPKGSIDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
Query: 181 LFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQ 240
LFLESSLPDIFT NSWVSPNA TRSRSN K+SP G + N+STPSS KFEN ++
Sbjct: 181 LFLESSLPDIFTTNSWVSPNAVTRSRSNGKASPVGMNLNMSTPSSSIKFEN--HSISSPS 238
Query: 241 GKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP 300
+ I +LV T +QP+PF++ +K
Sbjct: 239 THSSMEGILNLVEPNT------------NQPDPFNL-------------------EKPVT 267
Query: 301 ESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLC 360
ES EM ST + S+ YAGF++P EVS++SI
Sbjct: 268 ESLEMLSTTTASQDCCDYAGFLDPAEVSVASI---------------------------- 299
Query: 361 CSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHV 420
+RFGIST+FVD AGRPRLSFVVD S SLC VLDAC+ + KL DSGSSSEWR V
Sbjct: 300 -----MRFGISTRFVDPAGRPRLSFVVDGSPSLCQVLDACDQLAYKLSVDSGSSSEWRPV 354
Query: 421 VTRKGGFFNHPTARL 435
V RK GF N PT RL
Sbjct: 355 VIRKTGFLNTPTIRL 369
>gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa]
gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 271/432 (62%), Positives = 310/432 (71%), Gaps = 40/432 (9%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
++++EIAFFDVETTVPTRPGQ +AILEFGAILVCP+KLEE+ +YSTLVRP++P+LISSLS
Sbjct: 2 ENKTEIAFFDVETTVPTRPGQGYAILEFGAILVCPQKLEEIRSYSTLVRPSNPKLISSLS 61
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
VRCNGI P+AVVS+P+FADIADTV+DILHGRIWAGHNI+RFDC RIREAFAEIGR APEP
Sbjct: 62 VRCNGIIPEAVVSAPSFADIADTVYDILHGRIWAGHNIVRFDCVRIREAFAEIGRAAPEP 121
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
KGTIDSLALLTQ+FGRRAG+MKMASLATYFGLG QTHRSLDDVRMN+EVLK+CATVLFL
Sbjct: 122 KGTIDSLALLTQKFGRRAGNMKMASLATYFGLGNQTHRSLDDVRMNVEVLKHCATVLFLN 181
Query: 185 SSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEE 244
S S S+ KS+P SP + EE
Sbjct: 182 SP-----------------SSSSHVKSTPA--------------------LSPENDRTEE 204
Query: 245 IHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESRE 304
P+FSL+T TAE +A TA P+ FDM L N+M S QPD ME+ + E
Sbjct: 205 KRPVFSLLTSNTAEAQYSVASNTA-HPDTFDMVALGNEMNAASFQPDVAMEENPILQPPE 263
Query: 305 MCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRL 364
M ST +V E S GF+E DEVSLSSI VP F GS +IKL + ILQL C RL
Sbjct: 264 MPSTVTVPESCSDVLGFLELDEVSLSSIRAFHVPFFRGS--HRIKLFYEGAILQLRCPRL 321
Query: 365 KIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRK 424
+IRFG+STKF D AGRPRLSFVVD S SLC VLD CE IVRK+ DS SS+WR VVTRK
Sbjct: 322 RIRFGLSTKFSDHAGRPRLSFVVDASPSLCDVLDTCESIVRKVCADSDCSSDWRSVVTRK 381
Query: 425 GGFFNHPTARLQ 436
GF N+PT RL
Sbjct: 382 QGFVNNPTVRLN 393
>gi|356512002|ref|XP_003524710.1| PREDICTED: uncharacterized protein LOC100788659 [Glycine max]
Length = 501
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/432 (60%), Positives = 323/432 (74%), Gaps = 10/432 (2%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
++RSEI FFDVET+VPTR GQ FA+LEFGAILVCP+ L EL +YSTLVRPA+ +I+ LS
Sbjct: 3 EERSEIVFFDVETSVPTRAGQGFALLEFGAILVCPRTLTELRDYSTLVRPANLSVITPLS 62
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
RCNGI AV ++PTFADIA V+D+LHGRIWAGHNI+RFDC RIR+AFAEI +P PEP
Sbjct: 63 ERCNGINAAAVSAAPTFADIAHLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEINQPPPEP 122
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
KGTIDSL LLTQ+FGRRAGDMKMA+LATYFGLG+QTHRSLDDVRMNLEVLKYCATVLFLE
Sbjct: 123 KGTIDSLVLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLE 182
Query: 185 SSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEE 244
SSLPDIFT NSWVSPNATTRSRSN KS + N++ +++ +SP + K++
Sbjct: 183 SSLPDIFTANSWVSPNATTRSRSNGKSPSQWGLLNIN--------KDSVLSSPATESKDK 234
Query: 245 IHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESRE 304
PI S S +A DQ +PF++S L +++ +S++ D +E+K ES +
Sbjct: 235 NRPIISFALSSPKGNVSNIADPNMDQSDPFNLSTLEAEIKRESIKSDVALEEKPMQESTD 294
Query: 305 MCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRL 364
+ S++SVS+ S +EPD + + SI +VP F GS Q+I+LLH + QL C+ L
Sbjct: 295 LASSSSVSQPCSSSIAVLEPDGICIPSIDASLVPSFRGS--QRIELLHEGFLFQLHCTDL 352
Query: 365 KIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRK 424
K+RFGI++KF D AGRPRLSFVVD S SLC VLDAC+ + +KL DSGSSS+WR VV RK
Sbjct: 353 KVRFGINSKFFDSAGRPRLSFVVDPSPSLCNVLDACDRVAQKLTVDSGSSSDWRPVVIRK 412
Query: 425 GGFFNHPTARLQ 436
GFFN+PT RL
Sbjct: 413 EGFFNYPTVRLH 424
>gi|449440810|ref|XP_004138177.1| PREDICTED: uncharacterized protein LOC101203629 [Cucumis sativus]
Length = 471
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 273/439 (62%), Positives = 322/439 (73%), Gaps = 47/439 (10%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
MGPT+DRSEIAFFDVETTVPTR GQ+F+ILEFGAILVCPKKL EL +YSTLV+P+D LI
Sbjct: 1 MGPTEDRSEIAFFDVETTVPTRQGQKFSILEFGAILVCPKKLVELESYSTLVKPSDLSLI 60
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
SSLSVRCNGIT DAV+SSPTFA IAD V+DILHGRIWAGHNILRFDCARIREAFAEIG P
Sbjct: 61 SSLSVRCNGITRDAVISSPTFAQIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGVP 120
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
APEPKGTIDSLALLTQRFGRRAGDMKMA+LA+YFG+GQQTHRSLDDVRMNLEVLKYCATV
Sbjct: 121 APEPKGTIDSLALLTQRFGRRAGDMKMATLASYFGIGQQTHRSLDDVRMNLEVLKYCATV 180
Query: 181 LFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQ 240
LFLESSLP++F NSWVSPNA TR R+ AKSSP+G
Sbjct: 181 LFLESSLPEVFPENSWVSPNAVTRRRA-AKSSPQGN------------------------ 215
Query: 241 GKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP 300
T + + S+LA +A + + F+M S+Q+ +L+ D ME+ +
Sbjct: 216 ------------TICSEDRASILAEPSATESDSFNMHTTSDQITGATLETDINMEEHAT- 262
Query: 301 ESREMCSTASVSEGSSG---YAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVIL 357
+ + AS SE +S F+EPD+VS+S I+ VP F GS Q+I+L H D L
Sbjct: 263 ----VSTEASPSEDTSTSLCTTKFLEPDQVSVSFITASFVPFFRGS--QRIQLWHKDDCL 316
Query: 358 QLCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEW 417
QL C+ L++RFGISTKF D AGRPRLSFVVD+ +LCTVL+A + + ++L DSGS SEW
Sbjct: 317 QLLCNNLRVRFGISTKFTDYAGRPRLSFVVDVPPNLCTVLEASDGVAQRLFSDSGSGSEW 376
Query: 418 RHVVTRKGGFFNHPTARLQ 436
R VTRK G+FN+PT RL
Sbjct: 377 RPAVTRKNGYFNYPTMRLH 395
>gi|356562862|ref|XP_003549687.1| PREDICTED: uncharacterized protein LOC100818863 [Glycine max]
Length = 501
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 262/432 (60%), Positives = 323/432 (74%), Gaps = 10/432 (2%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
+DRSEI FFDVET+VPTR GQ FA+LEFGAILVCPK L EL NYSTLVRPA+ +IS LS
Sbjct: 3 EDRSEIVFFDVETSVPTRTGQGFALLEFGAILVCPKTLTELRNYSTLVRPANLSVISPLS 62
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
RCNGIT AV ++P+FADIA V+D+LHGRIWAGHNI+RFDC RIR+AFAEI +P PEP
Sbjct: 63 ERCNGITAAAVSAAPSFADIAHLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEINQPPPEP 122
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
KGTIDSL LLTQ+FGRRAGDMKMA+LATYFGLG+QTHRSLDDVRMNLEVLKYCATVLFLE
Sbjct: 123 KGTIDSLVLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLE 182
Query: 185 SSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEE 244
SSLPDIFT NSWVSPN+ TRSRSN KS +G N++ +++ +SP + K++
Sbjct: 183 SSLPDIFTANSWVSPNSITRSRSNEKSLSQGGLLNIN--------KDSVLSSPATESKDK 234
Query: 245 IHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESRE 304
HPI S +A DQ +PF++S L +++ +S++ D ME+K+ ES +
Sbjct: 235 NHPIISFALSSLKGNVPNIADPNIDQSDPFNLSALEAEIKRESIKSDAAMEEKTMQESPD 294
Query: 305 MCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRL 364
+ S++SVS+ S +EPD + + I +VP F GS Q+I+LLH L C+ L
Sbjct: 295 LASSSSVSQPCSSSIAVLEPDGICIPFIDASLVPSFLGS--QRIELLHEGFPFLLHCTDL 352
Query: 365 KIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRK 424
K+RFGI+++F D+AGRPRLSFVVD S SLC VLDAC+ + +KL DSGSSS+WR VV RK
Sbjct: 353 KVRFGINSRFFDRAGRPRLSFVVDPSPSLCNVLDACDRVAQKLNMDSGSSSDWRPVVIRK 412
Query: 425 GGFFNHPTARLQ 436
GFFN+PT RL
Sbjct: 413 EGFFNYPTIRLH 424
>gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana]
gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana]
gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana]
Length = 468
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 253/433 (58%), Positives = 299/433 (69%), Gaps = 45/433 (10%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
+DRSEIAFFDVETTVP R GQRFAILEFG+ILVCPKKL EL +Y+TLV+PAD LISSLS
Sbjct: 4 EDRSEIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLS 62
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
VRCNGI D VV +P FADIADTV+DILHGRIWAGHNILRFDCARIREAFAEIGR PEP
Sbjct: 63 VRCNGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPEP 122
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
KG IDSL LLTQ+FGRRAGDMKMA+LA YFGLG QTHRSLDDVRMNLEVLKYCATVLFLE
Sbjct: 123 KGAIDSLGLLTQKFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLE 182
Query: 185 SSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEE 244
SSLP NS VSP T SR +S EG +T ++ + + S S
Sbjct: 183 SSLPYAHVDNS-VSPE-TISSRRRIDASREG-----NTVTTSVRLPSISENS-------- 227
Query: 245 IHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQS-LQPDDTMEDKSAPESR 303
A QP+PF+MS L N+M + + +Q D ME++
Sbjct: 228 -----------------------AAQPDPFNMSVLRNEMASDNHIQSDILMEEEQIEP-- 262
Query: 304 EMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSR 363
S SE +S + GF+ PD +SLS+I + P +PGSQ+ K+KLLH D LQL CS
Sbjct: 263 ---SDVVASENTSDHEGFLTPDAMSLSNIKAMLFPFYPGSQMMKLKLLHGDSPLQLYCSY 319
Query: 364 LKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTR 423
LKIRFG++ KF+D GR RL+FVVD++ SL ++L+AC+ +KL DSGS+SEW VV
Sbjct: 320 LKIRFGVNGKFLDNTGRRRLNFVVDLNPSLYSILEACDSNAQKLSVDSGSTSEWNPVVNP 379
Query: 424 KGGFFNHPTARLQ 436
GF N+P AR+
Sbjct: 380 MKGFVNYPNARIH 392
>gi|42568689|ref|NP_200947.3| exonuclease-like protein [Arabidopsis thaliana]
gi|111074224|gb|ABH04485.1| At5g61390 [Arabidopsis thaliana]
gi|332010078|gb|AED97461.1| exonuclease-like protein [Arabidopsis thaliana]
Length = 487
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 248/438 (56%), Positives = 297/438 (67%), Gaps = 36/438 (8%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
+ P +DRSEIAFFDVETT+P R GQ +AILEFG+ILVCPKKL EL NYS LVRPA+ LI
Sbjct: 7 LTPAEDRSEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLI 66
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
+ SV+CNGI + V S+ TFADIADTV+DILHGRIWAGHNIL+FDC RIREAFAEIGR
Sbjct: 67 TPRSVKCNGIKREDVESALTFADIADTVYDILHGRIWAGHNILKFDCPRIREAFAEIGRD 126
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
PEPKGTIDSLALLTQRFGRRAGDMKMA+LATYFGLG QTHRSLDDVRMN EVLKYCATV
Sbjct: 127 PPEPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLKYCATV 186
Query: 181 LFLESSLPDIFTVNS--WVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPP 238
LFLESSLPD NS +P ++R R K SP L +P+ + EN +
Sbjct: 187 LFLESSLPDELIENSVTTTTPETSSRRRRTIKKSP------LQSPTDQQTGENMTTI--- 237
Query: 239 DQGKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKS 298
PI S V+ A+ D PFDMS L N++ + LQ D ME++
Sbjct: 238 --------PILSFVSSAEAQTD------------PFDMSTLRNEIAPEVLQSDVPMEEEQ 277
Query: 299 APESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQ 358
+S + SEG+ GFME D++S+SSI VPL+ GSQ K++L D LQ
Sbjct: 278 NQQSETVA-----SEGTGDQEGFMELDKISVSSIRATHVPLYDGSQTMKLQLFLGDRPLQ 332
Query: 359 LCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWR 418
L C RLK+RFGI+ KF+D+AGR RL+FV+D+ SLC VL C+ + + DSGS S+W
Sbjct: 333 LHCPRLKVRFGINGKFMDKAGRRRLNFVIDLYPSLCNVLQECDSAAQTISVDSGSGSDWN 392
Query: 419 HVVTRKGGFFNHPTARLQ 436
+V GF N PTAR+
Sbjct: 393 PLVIPMKGFLNCPTARIH 410
>gi|297806807|ref|XP_002871287.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317124|gb|EFH47546.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 468
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 254/433 (58%), Positives = 300/433 (69%), Gaps = 45/433 (10%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
+DRSEIAFFDVETTVP R GQRFAILEFG+ILVCPKKL EL +Y+TLV+PAD LISSLS
Sbjct: 4 EDRSEIAFFDVETTVPNR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLS 62
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
VRCNGI D VV +P FADIADTV+DILHGRIWAGHNILRFDCARIREAFAEIGR PEP
Sbjct: 63 VRCNGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPEP 122
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
KG IDSL LLTQ+FGRRAGDMKMA+LA YFGLG QTHRSLDDVRMNLEVLKYCATVLFLE
Sbjct: 123 KGAIDSLGLLTQQFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLE 182
Query: 185 SSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEE 244
SSLP V+ VSP TT SR +S EG +T ++ + + S S
Sbjct: 183 SSLP-YAHVDHSVSP-GTTSSRRRIDASHEG-----NTVTTSVRLPSISENS-------- 227
Query: 245 IHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQS-LQPDDTMEDKSAPESR 303
A QP+PF+MS L N+M + + LQ D ME E +
Sbjct: 228 -----------------------AAQPDPFNMSILRNEMASDNHLQSDILME-----EEQ 259
Query: 304 EMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSR 363
S V E +S + GF+ PD VSL +I +VP +PGS++ K+KLLH D LQL CS
Sbjct: 260 IQPSDIVVPENTSDHEGFLAPDAVSLPNIKAILVPFYPGSEMMKLKLLHGDSPLQLYCSC 319
Query: 364 LKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTR 423
LK+RFG+S KF+D GR +L+FVVD++ SLC++L+AC+ +KL DSGS+S W VV
Sbjct: 320 LKVRFGVSGKFLDNTGRRKLNFVVDLNLSLCSILEACDSSAQKLSVDSGSTSGWNPVVNP 379
Query: 424 KGGFFNHPTARLQ 436
GF N+P AR+
Sbjct: 380 MKGFVNYPNARIH 392
>gi|297797093|ref|XP_002866431.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297312266|gb|EFH42690.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 484
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/434 (56%), Positives = 295/434 (67%), Gaps = 36/434 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
+DRSEIAFFDVETT+P R GQ +AILEFG+ILVCPKKL EL NYS LVRPA+ LI+ S
Sbjct: 8 EDRSEIAFFDVETTIPFRAGQGYAILEFGSILVCPKKLVELRNYSVLVRPANLNLITPRS 67
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
V+CNGI + V S+ TFADIADTV+DILHGRIWAGHNIL+FDC RI EAFAEIGR PEP
Sbjct: 68 VKCNGIKREDVESAATFADIADTVYDILHGRIWAGHNILKFDCPRISEAFAEIGRDPPEP 127
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
KGTIDSLALLTQRFGRRAGDMKMA+LA+YFGLG QTHRSLDDVRMNLEVLKYCATVLFLE
Sbjct: 128 KGTIDSLALLTQRFGRRAGDMKMATLASYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLE 187
Query: 185 SSLPDIFTVNS--WVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGK 242
SSLPD NS +P ++R R N K+SP L +P+ EN++
Sbjct: 188 SSLPDELIENSVTTTTPETSSRRRRNIKTSP------LQSPADHQTGENSTTI------- 234
Query: 243 EEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPES 302
PI S V+ A+ D PFDMS L N++ + LQ D ME++ +S
Sbjct: 235 ----PILSFVSSAEAQTD------------PFDMSTLRNEIAPEVLQSDVPMEEEQNQQS 278
Query: 303 REMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCS 362
+ SEG+ GF+E D++S+SSI VPL+ GSQ K++L D LQL C
Sbjct: 279 ETV-----TSEGTCDQEGFLELDKMSISSIRATHVPLYDGSQTMKVQLCLGDRPLQLHCP 333
Query: 363 RLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVT 422
L++RFGI+ KF+D+AGR RL+FVVD+ SLC VL C+ + + DSGS S+W V
Sbjct: 334 HLRVRFGINGKFMDKAGRRRLNFVVDLYPSLCNVLQECDNAAQTISVDSGSDSDWNPAVI 393
Query: 423 RKGGFFNHPTARLQ 436
GF N PTAR+
Sbjct: 394 PMKGFLNCPTARIH 407
>gi|9757860|dbj|BAB08494.1| exonuclease-like protein [Arabidopsis thaliana]
Length = 500
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 248/454 (54%), Positives = 297/454 (65%), Gaps = 52/454 (11%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
+ P +DRSEIAFFDVETT+P R GQ +AILEFG+ILVCPKKL EL NYS LVRPA+ LI
Sbjct: 4 LTPAEDRSEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLI 63
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
+ SV+CNGI + V S+ TFADIADTV+DILHGRIWAGHNIL+FDC RIREAFAEIGR
Sbjct: 64 TPRSVKCNGIKREDVESALTFADIADTVYDILHGRIWAGHNILKFDCPRIREAFAEIGRD 123
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
PEPKGTIDSLALLTQRFGRRAGDMKMA+LATYFGLG QTHRSLDDVRMN EVLKYCATV
Sbjct: 124 PPEPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLKYCATV 183
Query: 181 LFL----------------ESSLPDIFTVNS--WVSPNATTRSRSNAKSSPEGTSQNLST 222
LFL ESSLPD NS +P ++R R K SP L +
Sbjct: 184 LFLVCSLYELIQKHAIFQQESSLPDELIENSVTTTTPETSSRRRRTIKKSP------LQS 237
Query: 223 PSSKFKFENASNASPPDQGKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQ 282
P+ + EN + PI S V+ A+ D PFDMS L N+
Sbjct: 238 PTDQQTGENMTTI-----------PILSFVSSAEAQTD------------PFDMSTLRNE 274
Query: 283 METQSLQPDDTMEDKSAPESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPG 342
+ + LQ D ME++ +S + SEG+ GFME D++S+SSI VPL+ G
Sbjct: 275 IAPEVLQSDVPMEEEQNQQSETVA-----SEGTGDQEGFMELDKISVSSIRATHVPLYDG 329
Query: 343 SQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEV 402
SQ K++L D LQL C RLK+RFGI+ KF+D+AGR RL+FV+D+ SLC VL C+
Sbjct: 330 SQTMKLQLFLGDRPLQLHCPRLKVRFGINGKFMDKAGRRRLNFVIDLYPSLCNVLQECDS 389
Query: 403 IVRKLVEDSGSSSEWRHVVTRKGGFFNHPTARLQ 436
+ + DSGS S+W +V GF N PTAR+
Sbjct: 390 AAQTISVDSGSGSDWNPLVIPMKGFLNCPTARIH 423
>gi|15221225|ref|NP_177579.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
gi|12324816|gb|AAG52378.1|AC011765_30 putative exonuclease; 20146-18080 [Arabidopsis thaliana]
gi|20466502|gb|AAM20568.1| putative exonuclease [Arabidopsis thaliana]
gi|23198160|gb|AAN15607.1| putative exonuclease [Arabidopsis thaliana]
gi|332197464|gb|AEE35585.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 506
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/431 (54%), Positives = 304/431 (70%), Gaps = 12/431 (2%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
+RSEIAFFD+ET VPT+ G+ FAILEFGAILVCP++LEEL++YSTLVRP D LIS+L+
Sbjct: 9 ERSEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTK 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
R +GIT D V+S+ TF++IAD V+DILHGRIWAGHNI+RFDC RIREAFAEIG PEPK
Sbjct: 69 RRSGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLSPPEPK 128
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
TIDSL+LL+Q+FG+RAGDMKMASLATYFGLG Q HRSLDDVRMNLEV+KYCATVLFLES
Sbjct: 129 ATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATVLFLES 188
Query: 186 SLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEI 245
S+PDI T SW SP + R+RSN K G ++ ++ SS K + +S++ D +
Sbjct: 189 SVPDILTDMSWFSPRKSPRTRSNGKLVANGVRESSTSSSSSPKTDPSSSSV--DATIVKN 246
Query: 246 HPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREM 305
HPI SL+T+ +E D+ ++ D +P D++ L ++ +LQ D E K+ R+
Sbjct: 247 HPIVSLLTE-CSESDA----SSYDIEDPIDITTLIGKLRIGTLQTDAAEEAKTV---RQQ 298
Query: 306 CSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLK 365
+ + + F+ +EVS+SSI +VP + GS ++KL HND L LC LK
Sbjct: 299 DESPPSPDSDAKDESFLGVNEVSVSSIRASLVPFYRGS--LRMKLFHNDTPLHLCWHSLK 356
Query: 366 IRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKG 425
+RFGIS KFVD AGRP+L+ +VD LC +LDA + L DS ++S+WR V RK
Sbjct: 357 VRFGISRKFVDHAGRPKLNIIVDAPLDLCKILDAVDAAAHNLPTDSSTNSDWRPTVIRKE 416
Query: 426 GFFNHPTARLQ 436
GF N+PTARL
Sbjct: 417 GFANYPTARLH 427
>gi|297842185|ref|XP_002888974.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297334815|gb|EFH65233.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 506
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/432 (55%), Positives = 304/432 (70%), Gaps = 14/432 (3%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
+RSEIAFFD+ET VPT+ GQ FAILEFGAILVCP+KL EL++YSTLV+P D LIS+L+
Sbjct: 9 ERSEIAFFDLETAVPTKSGQPFAILEFGAILVCPRKLVELYSYSTLVQPTDLSLISTLTK 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
R +GIT D V+S+PTF++IAD V+DILHGRIWAGHNI RFDC RIR+AFAEIG PEPK
Sbjct: 69 RRSGITRDGVLSAPTFSEIADEVYDILHGRIWAGHNIKRFDCVRIRDAFAEIGLCPPEPK 128
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
TIDSL+LL+Q+FG+RAGDMKMASLATYFGLG Q HRSLDDVRMNLEV+KYCATVLFLES
Sbjct: 129 ATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATVLFLES 188
Query: 186 SLPDIFTVNSWVSPNATTRS-RSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEE 244
S+PDI T SW SP + R+ RSN +S +G ++ ++ SS K + + S D +
Sbjct: 189 SVPDILTDMSWFSPRKSPRARRSNEESVRDGVRESSTSSSSSPKTD--PSLSSADATIVK 246
Query: 245 IHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESRE 304
HPI SL+T+ +E D T++ + +P D++ L +++ +LQ D E K+ + E
Sbjct: 247 NHPIVSLLTE-CSESD-----TSSCEIDPSDITTLISKLHIGTLQTDAADEAKTVRQQGE 300
Query: 305 MCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRL 364
+ + G +EVS+SSI ++P + GS ++KL HND L LC L
Sbjct: 301 SPPSPDTDAKDDSFLGV---NEVSVSSIRASLIPFYHGS--LRMKLFHNDTPLHLCWYSL 355
Query: 365 KIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRK 424
KIRFGIS KFVD AG PRL+ VVDI +LC +LDA + L DS ++S+WR V RK
Sbjct: 356 KIRFGISRKFVDHAGHPRLNIVVDIPPALCKILDAADAAAHNLPIDSSTNSDWRPTVIRK 415
Query: 425 GGFFNHPTARLQ 436
GF N+PTARLQ
Sbjct: 416 EGFANYPTARLQ 427
>gi|226498878|ref|NP_001148000.1| UTP-glucose-P-uridyltransferase homolog [Zea mays]
gi|194706488|gb|ACF87328.1| unknown [Zea mays]
gi|195615060|gb|ACG29360.1| exonuclease [Zea mays]
gi|413934232|gb|AFW68783.1| exonuclease [Zea mays]
Length = 499
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/435 (53%), Positives = 296/435 (68%), Gaps = 41/435 (9%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP-ELIS 61
P + +EIAFFDVET+VP R GQ +A+LEFGAILVCP++L E+ +Y+TLVRPADP +S
Sbjct: 28 PAEGPTEIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPASAVS 87
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
+ SVRCNGIT DAV ++P F D+AD V+D+L+GR+WAGHNI+RFD ARIREAF EIGR
Sbjct: 88 AASVRCNGITRDAVSAAPPFRDVADAVYDLLNGRVWAGHNIVRFDSARIREAFTEIGRSP 147
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
P+PKG ID+L LLTQRFGRRAGDMKMASLA YFGLG+Q HRSLDDVRMNLEVLKYCATVL
Sbjct: 148 PQPKGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGKQRHRSLDDVRMNLEVLKYCATVL 207
Query: 182 FLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQG 241
FLE+SLP++ TV + V A TRSR+N +SP+ L P + SPPD
Sbjct: 208 FLEASLPEVLTVENLVE-RAMTRSRANGTASPD-----LPKPEAN---------SPPDSS 252
Query: 242 KEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPE 301
K + + + VD V M NQ + +++E S E
Sbjct: 253 KRQ---------RTVSPVDCV-------------MPAEGNQGTSDPSTNRESVELVSHIE 290
Query: 302 SREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCC 361
++ +T V SSGY GF+EPD+VS+ I V PL + I+ H D LQLCC
Sbjct: 291 EMKLNTTTHVDASSSGYPGFLEPDDVSIECIKISVAPLHQFGRRSSIQ--HRDCPLQLCC 348
Query: 362 SRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVV 421
+ LK++FG+STKF+D AGRP++S VV+I ++LC VL+ C+V+ RKL ++SGSSSEWR ++
Sbjct: 349 AGLKVQFGVSTKFLDNAGRPKMSIVVEIPENLCKVLEFCDVLARKLSQESGSSSEWRPLI 408
Query: 422 TRKGGFFNHPTARLQ 436
+K G+ N PT RL
Sbjct: 409 -KKYGYINRPTIRLN 422
>gi|242039735|ref|XP_002467262.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
gi|241921116|gb|EER94260.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
Length = 505
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/435 (52%), Positives = 295/435 (67%), Gaps = 41/435 (9%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP-ELIS 61
P + EIAFFDVET+VP R GQ +A+LEFGAILVCP++L E+ +Y+TLVRPADP +S
Sbjct: 34 PGEGGPEIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPVSAVS 93
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
+ SVRCNGIT DAV +P F D+AD V+D+L+GR+WAGHNI+RFD ARIREAF EIGR
Sbjct: 94 AASVRCNGITRDAVSGAPPFRDVADAVYDLLNGRVWAGHNIVRFDSARIREAFTEIGRSP 153
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
P+PKG ID+L LLTQRFGRRAGDMKMASLA YFGLG+Q HRSLDDVRMNLEVLKYCATVL
Sbjct: 154 PQPKGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGKQRHRSLDDVRMNLEVLKYCATVL 213
Query: 182 FLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQG 241
FLE+SLP++ TV + V ATTRSR+N SP+ L P + SPPD
Sbjct: 214 FLEASLPEVLTVENLVE-RATTRSRANGIVSPD-----LPKPEAN---------SPPDSS 258
Query: 242 KEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPE 301
K + + + +DSV+ + NQ + +++E S E
Sbjct: 259 KRQ---------RIVSPIDSVIP-------------EEGNQRTSGPSTNRESVELVSHIE 296
Query: 302 SREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCC 361
++ +T + SSGY+GF+EPD+VS+ I V PL + I+ H D LQLCC
Sbjct: 297 EMKLDTTTHMDASSSGYSGFLEPDDVSIECIEISVAPLHQFGRRSSIQ--HRDCPLQLCC 354
Query: 362 SRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVV 421
+ LK++FG+STKF+D AGRP++S VV+I +SL VL+ C+ + RKL ++SGSSSEWR ++
Sbjct: 355 AGLKVQFGVSTKFLDNAGRPKMSIVVEIPESLSKVLEFCDDLARKLSQESGSSSEWRPLI 414
Query: 422 TRKGGFFNHPTARLQ 436
+K G+ N PT RL
Sbjct: 415 -KKYGYVNRPTVRLN 428
>gi|357146112|ref|XP_003573879.1| PREDICTED: uncharacterized protein LOC100834632 [Brachypodium
distachyon]
Length = 492
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/438 (51%), Positives = 289/438 (65%), Gaps = 46/438 (10%)
Query: 2 GPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELIS 61
P EIAFFDVET+VP R GQ +A+LEFGAILVCP++L E+ Y+TLVRP D ++S
Sbjct: 21 APVAGGPEIAFFDVETSVPQRTGQGYALLEFGAILVCPRRLVEVACYATLVRPNDLGVVS 80
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
+ SVRCNGIT DAV +P F D+AD V+D+LHGR+WAGHNI+RFD RIREAF EIGR
Sbjct: 81 AASVRCNGITRDAVAGAPGFRDVADAVYDVLHGRVWAGHNIVRFDLPRIREAFTEIGRSP 140
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
PEPKGTID+L LLTQRFGRRAGDMKMASLA YFGLG+Q HRSLDDVRMNL+VLKYCATVL
Sbjct: 141 PEPKGTIDTLPLLTQRFGRRAGDMKMASLANYFGLGRQKHRSLDDVRMNLDVLKYCATVL 200
Query: 182 FLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQN-LSTPSSKFKFENAS--NASPP 238
FLE+SLP++ TV + + A TRS++N +SPE + S+P S + S N S P
Sbjct: 201 FLEASLPEVLTVENLLE-RAITRSKANGATSPEAPKPDATSSPDSSKRQRTVSRVNNSIP 259
Query: 239 DQGKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKS 298
D +E T D + SQL + +E L D TM+
Sbjct: 260 DGDNQE----------------------TVDLATNNESSQLISHIEEMKL--DGTMK--- 292
Query: 299 APESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQ 358
+ SSGY+GF+EP +VS I V P + + Q+I + H D L
Sbjct: 293 ------------MDASSSGYSGFLEPQDVSTVCIKICVAPSYQFA--QRISIRHKDSPLH 338
Query: 359 LCCSRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWR 418
LCC+ LK++FG+STKF+D AGRP+L+ VVDI ++LC VL+ C+ + ++ ++SGS+S+WR
Sbjct: 339 LCCAALKVQFGVSTKFLDNAGRPKLNIVVDIPENLCKVLEFCDGLAQRSSQESGSTSDWR 398
Query: 419 HVVTRKGGFFNHPTARLQ 436
++ +K G+ NHPT RL
Sbjct: 399 PLI-KKYGYVNHPTVRLN 415
>gi|334183910|ref|NP_001185397.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
gi|332197465|gb|AEE35586.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 495
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/431 (52%), Positives = 293/431 (67%), Gaps = 23/431 (5%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
+RSEIAFFD+ET VPT+ G+ FAILEFGAILVCP++LEEL++YSTLVRP D LIS+L+
Sbjct: 9 ERSEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTK 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
R +GIT D V+S+ TF++IAD V+DILHGRIWAGHNI+RFDC RIREAFAEIG PEPK
Sbjct: 69 RRSGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLSPPEPK 128
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
TIDSL+LL+Q+FG+RAGDMKMASLATYFGLG Q HRSLDDVRMNLE ES
Sbjct: 129 ATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLE-----------ES 177
Query: 186 SLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEI 245
S+PDI T SW SP + R+RSN K G ++ ++ SS K + +S++ D +
Sbjct: 178 SVPDILTDMSWFSPRKSPRTRSNGKLVANGVRESSTSSSSSPKTDPSSSSV--DATIVKN 235
Query: 246 HPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREM 305
HPI SL+T+ +E D+ ++ D +P D++ L ++ +LQ D E K+ R+
Sbjct: 236 HPIVSLLTE-CSESDA----SSYDIEDPIDITTLIGKLRIGTLQTDAAEEAKTV---RQQ 287
Query: 306 CSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLK 365
+ + + F+ +EVS+SSI +VP + GS ++KL HND L LC LK
Sbjct: 288 DESPPSPDSDAKDESFLGVNEVSVSSIRASLVPFYRGS--LRMKLFHNDTPLHLCWHSLK 345
Query: 366 IRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKG 425
+RFGIS KFVD AGRP+L+ +VD LC +LDA + L DS ++S+WR V RK
Sbjct: 346 VRFGISRKFVDHAGRPKLNIIVDAPLDLCKILDAVDAAAHNLPTDSSTNSDWRPTVIRKE 405
Query: 426 GFFNHPTARLQ 436
GF N+PTARL
Sbjct: 406 GFANYPTARLH 416
>gi|15451563|gb|AAK98687.1|AC021893_21 Putative exonuclease [Oryza sativa Japonica Group]
gi|31432001|gb|AAP53700.1| exonuclease family protein, putative, expressed [Oryza sativa
Japonica Group]
Length = 493
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/428 (50%), Positives = 285/428 (66%), Gaps = 40/428 (9%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
EIAFFDVET+VP R GQ +A+LEFGAILVCP++L + +Y+TLVRP D ++S+ SVRCN
Sbjct: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT DAV ++P F D+AD V+ +LHGR+WAGHNI+RFD ARIREAFAEIGRP PEPKG I
Sbjct: 89 GITRDAVAAAPAFRDVADAVYSVLHGRVWAGHNIVRFDLARIREAFAEIGRPPPEPKGMI 148
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLP 188
D+L LLTQ+FGRRAGDMKMASLA YFGLG+Q+HRSLDDVRMNLEVLKYCATVLFLE+SLP
Sbjct: 149 DTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLEASLP 208
Query: 189 DIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEIHPI 248
+ TV + V A TRS++N +SPE + P ++ S PD K +
Sbjct: 209 GVLTVENLVE-RAITRSQANGAASPE-----VPKPVAR---------SSPDSSKRQ---- 249
Query: 249 FSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCST 308
+ + VD+ + NQ + +E S E + S
Sbjct: 250 -----RTISRVDNAIQAG-------------GNQQSIDPATNKEPIELISNIEEMTLGSG 291
Query: 309 ASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRF 368
+ SSG++GF+EPD+VS SI V + ++ IK H +QLCC+ L+I+F
Sbjct: 292 IQIDASSSGFSGFLEPDDVSTESIQISVPSSYRLTRKTSIK--HKGSPIQLCCAGLRIQF 349
Query: 369 GISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKGGFF 428
G+STKF+D AGRP+L+ +VDI ++L +L+ C+ I +K +DSGS+SEWR ++ +K G+
Sbjct: 350 GVSTKFLDSAGRPKLNILVDIPENLSKILEFCDGIAQKSSQDSGSTSEWRPLI-KKYGYV 408
Query: 429 NHPTARLQ 436
N PT RL
Sbjct: 409 NCPTVRLH 416
>gi|297610461|ref|NP_001064570.2| Os10g0407500 [Oryza sativa Japonica Group]
gi|255679392|dbj|BAF26484.2| Os10g0407500 [Oryza sativa Japonica Group]
Length = 517
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/432 (50%), Positives = 285/432 (65%), Gaps = 44/432 (10%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
EIAFFDVET+VP R GQ +A+LEFGAILVCP++L + +Y+TLVRP D ++S+ SVRCN
Sbjct: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
Query: 69 GITPDAVVSSPTFADIADTVFDILH----GRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
GIT DAV ++P F D+AD V+ +LH GR+WAGHNI+RFD ARIREAFAEIGRP PEP
Sbjct: 89 GITRDAVAAAPAFRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP 148
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
KG ID+L LLTQ+FGRRAGDMKMASLA YFGLG+Q+HRSLDDVRMNLEVLKYCATVLFLE
Sbjct: 149 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 208
Query: 185 SSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEE 244
+SLP + TV + V A TRS++N +SPE + P ++ S PD K +
Sbjct: 209 ASLPGVLTVENLVE-RAITRSQANGAASPE-----VPKPVAR---------SSPDSSKRQ 253
Query: 245 IHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESRE 304
+ + VD+ + NQ + +E S E
Sbjct: 254 ---------RTISRVDNAIQAG-------------GNQQSIDPATNKEPIELISNIEEMT 291
Query: 305 MCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRL 364
+ S + SSG++GF+EPD+VS SI V + ++ IK H +QLCC+ L
Sbjct: 292 LGSGIQIDASSSGFSGFLEPDDVSTESIQISVPSSYRLTRKTSIK--HKGSPIQLCCAGL 349
Query: 365 KIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRK 424
+I+FG+STKF+D AGRP+L+ +VDI ++L +L+ C+ I +K +DSGS+SEWR ++ +K
Sbjct: 350 RIQFGVSTKFLDSAGRPKLNILVDIPENLSKILEFCDGIAQKSSQDSGSTSEWRPLI-KK 408
Query: 425 GGFFNHPTARLQ 436
G+ N PT RL
Sbjct: 409 YGYVNCPTVRLH 420
>gi|326496743|dbj|BAJ98398.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/429 (49%), Positives = 279/429 (65%), Gaps = 44/429 (10%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+EIAFFD+ET+VP R GQ +A+LEFGAILVCP++L E+ Y+TLVRPAD ++S+ S+RC
Sbjct: 24 AEIAFFDLETSVPQRAGQGYALLEFGAILVCPRRLVEVACYATLVRPADLGVVSAASMRC 83
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
NGIT DAV ++P F D+AD +D+LHGR+WAGHNI+RFD RIREAF EIGRP PEPKG
Sbjct: 84 NGITRDAVAAAPCFRDVADKAYDLLHGRVWAGHNIVRFDVPRIREAFIEIGRPPPEPKGM 143
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 187
ID+L LLTQRFGRRAGDMKMASLA YFGLG+Q HRSLDDVRMNLEVLKYCATVLFLE+SL
Sbjct: 144 IDTLPLLTQRFGRRAGDMKMASLANYFGLGRQKHRSLDDVRMNLEVLKYCATVLFLEASL 203
Query: 188 PDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEIHP 247
P++ V + V TRS+++ +SPE K E +N SP ++ I
Sbjct: 204 PEVLIVENLV--GTITRSKTDGATSPEVK-----------KLE--ANMSPDSSKRQHI-- 246
Query: 248 IFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCS 307
++VD + T DQ N Q S + T D EM
Sbjct: 247 --------VSQVDGL----TTDQDN-----QESVDLATNGGSSD------LISHVEEMKL 283
Query: 308 TASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIR 367
A V S ++GF+EPD+VS I P + ++ IK H D +L LCC+ L I+
Sbjct: 284 DAFVQMDVS-FSGFLEPDDVSTECIKISASPSYQFNRRTLIK--HKDSLLHLCCAGLNIQ 340
Query: 368 FGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKGGF 427
FG+ TKF+D AGR + + +VDI ++L VL+ C+ ++ ++DSG++SEWR ++ +K G+
Sbjct: 341 FGVGTKFLDTAGRQKFNMLVDIPENLSKVLEFCDNQAQRFLQDSGTTSEWRPLI-KKYGY 399
Query: 428 FNHPTARLQ 436
N PT RL
Sbjct: 400 VNRPTVRLN 408
>gi|125531875|gb|EAY78440.1| hypothetical protein OsI_33531 [Oryza sativa Indica Group]
Length = 482
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/434 (47%), Positives = 273/434 (62%), Gaps = 50/434 (11%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P EIAFFDVET+VP R GQ +A+LEFGAILVCP++L + +Y+TLVRP D ++S+
Sbjct: 22 PEAGGPEIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSA 81
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
SVRCNGIT DAV ++P F D+AD V+ +LHG RIREAFAEIGRP P
Sbjct: 82 ASVRCNGITRDAVAAAPAFRDVADAVYSVLHG----------LTRTRIREAFAEIGRPPP 131
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLF 182
EPKG ID+L LLTQ+FGRRAGDMKMASLA YFGLG+Q+HRSLDDVRMNLEVLKYCATVLF
Sbjct: 132 EPKGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLF 191
Query: 183 LESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGK 242
LE+SLP + TV + V A TRS++N +SPE + P ++ S PD K
Sbjct: 192 LEASLPGVLTVENLVE-RAITRSQANGAASPE-----VPKPVAR---------SSPDSSK 236
Query: 243 EEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPES 302
+ + + VD+ + NQ + +E S E
Sbjct: 237 RQ---------RTISRVDNAIQAG-------------GNQQSIDPATNKEPIELISNIEE 274
Query: 303 REMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCS 362
+ S + SSG++GF+EPD+VS SI V + ++ IK H +QLCC+
Sbjct: 275 MTLGSGIQIDASSSGFSGFLEPDDVSTESIQISVPSSYRLTRKTSIK--HKGSPIQLCCA 332
Query: 363 RLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVT 422
L+I+FG+STKF+D AGRP+L+ +VDI ++L +L+ C+ I +K +DSGS+SEWR ++
Sbjct: 333 GLRIQFGVSTKFLDSAGRPKLNILVDIPENLSKILEFCDGIAQKSSQDSGSTSEWRPLI- 391
Query: 423 RKGGFFNHPTARLQ 436
+K G+ N PT RL
Sbjct: 392 KKYGYVNRPTVRLH 405
>gi|110289067|gb|ABG66074.1| exonuclease family protein, putative, expressed [Oryza sativa
Japonica Group]
Length = 267
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 147/206 (71%), Positives = 175/206 (84%), Gaps = 1/206 (0%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
EIAFFDVET+VP R GQ +A+LEFGAILVCP++L + +Y+TLVRP D ++S+ SVRCN
Sbjct: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT DAV ++P F D+AD V+ +LHGR+WAGHNI+RFD ARIREAFAEIGRP PEPKG I
Sbjct: 89 GITRDAVAAAPAFRDVADAVYSVLHGRVWAGHNIVRFDLARIREAFAEIGRPPPEPKGMI 148
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLP 188
D+L LLTQ+FGRRAGDMKMASLA YFGLG+Q+HRSLDDVRMNLEVLKYCATVLFLE+SLP
Sbjct: 149 DTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLEASLP 208
Query: 189 DIFTVNSWVSPNATTRSRSNAKSSPE 214
+ TV + V A TRS++N +SPE
Sbjct: 209 GVLTVENLVE-RAITRSQANGAASPE 233
>gi|147791948|emb|CAN61478.1| hypothetical protein VITISV_013817 [Vitis vinifera]
Length = 293
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 148/250 (59%), Positives = 182/250 (72%), Gaps = 3/250 (1%)
Query: 4 TQDRS-EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
+Q+R+ EI FFD+ETTVP R GQRF +LEFGAI+VCP+KL EL +YSTL+RP D ++
Sbjct: 41 SQERAAEIVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGDLSAVAL 100
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
S R +GIT + V +P F ++AD +F IL+GR+WAGHNI RFDC RI+EAFAEIGR AP
Sbjct: 101 RSGRSDGITREVVAGAPGFEEVADQIFSILNGRVWAGHNIQRFDCVRIKEAFAEIGRAAP 160
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLF 182
P G IDSL +LT++FGRRAG+MKMA+LATYFGLGQQ HRSLDDVRMNLEVLK+CATVLF
Sbjct: 161 VPVGMIDSLGVLTEKFGRRAGNMKMATLATYFGLGQQKHRSLDDVRMNLEVLKHCATVLF 220
Query: 183 LESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGK 242
LESSLP + + S TTRSRSN K S S P++ ++ A + GK
Sbjct: 221 LESSLPSVLSGKWHDSTTITTRSRSNGKLMCREESSRKS-PTTSLGYQRAVPYARGGLGK 279
Query: 243 EEIHPIFSLV 252
P FSL+
Sbjct: 280 VSSFP-FSLL 288
>gi|296082445|emb|CBI21450.3| unnamed protein product [Vitis vinifera]
Length = 303
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/250 (59%), Positives = 182/250 (72%), Gaps = 3/250 (1%)
Query: 4 TQDRS-EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
+Q+R+ EI FFD+ETTVP R GQRF +LEFGAI+VCP+KL EL +YSTL+RP D ++
Sbjct: 8 SQERAAEIVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGDLSAVAL 67
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
S R +GIT + V +P F ++AD +F IL+GR+WAGHNI RFDC RI+EAFAEIGR AP
Sbjct: 68 RSGRSDGITREVVAGAPGFEEVADQIFSILNGRVWAGHNIQRFDCVRIKEAFAEIGRAAP 127
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLF 182
P G IDSL +LT++FGRRAG+MKMA+LATYFGLGQQ HRSLDDVRMNLEVLK+CATVLF
Sbjct: 128 VPVGMIDSLGVLTEKFGRRAGNMKMATLATYFGLGQQKHRSLDDVRMNLEVLKHCATVLF 187
Query: 183 LESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGK 242
LESSLP + + S TTRSRSN K S S P++ ++ A + GK
Sbjct: 188 LESSLPSVLSGKWHDSTTITTRSRSNGKLMCREESSRKS-PTTSLGYQRAVPYARGGLGK 246
Query: 243 EEIHPIFSLV 252
P FSL+
Sbjct: 247 VSSFP-FSLL 255
>gi|224083745|ref|XP_002307108.1| predicted protein [Populus trichocarpa]
gi|222856557|gb|EEE94104.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/203 (66%), Positives = 164/203 (80%), Gaps = 2/203 (0%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
EI FFD+ETTVP + GQRF +LEFGAI+VCP+KL EL +YSTL+RP D ++ S RC+
Sbjct: 11 EIVFFDLETTVPNKAGQRFWVLEFGAIIVCPRKLVELDSYSTLIRPEDLSAVALKSGRCD 70
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT +AV ++P F ++AD +F IL+GRIWAGHNI RFDC RI+EAFAEIGRPAP P G
Sbjct: 71 GITREAVANAPAFEEVADKIFTILNGRIWAGHNIQRFDCVRIKEAFAEIGRPAPMPVGMF 130
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLP 188
DSL +LT++FGRRAG+MKMA+LATYFGLGQQ HRSL+DVRMNLEVLK+CA VLF+ESSLP
Sbjct: 131 DSLGVLTEKFGRRAGNMKMATLATYFGLGQQKHRSLEDVRMNLEVLKHCAAVLFVESSLP 190
Query: 189 DIFTVNSWVSPNA-TTRSRSNAK 210
+ W +P+ TRSRSN K
Sbjct: 191 SVMN-GKWHNPSTMVTRSRSNGK 212
>gi|224096223|ref|XP_002310581.1| predicted protein [Populus trichocarpa]
gi|222853484|gb|EEE91031.1| predicted protein [Populus trichocarpa]
Length = 231
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/203 (66%), Positives = 161/203 (79%), Gaps = 2/203 (0%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
EI FD+ETTVP R GQRF +LEFGAI VCP+KL EL +YSTL+RP D ++ S RC+
Sbjct: 13 EIVVFDLETTVPNRAGQRFRVLEFGAITVCPRKLVELDSYSTLIRPKDLSAVALKSGRCD 72
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT AV ++P F ++AD +F IL+GRIWAGHNI RFDC RI+EAFAEIG+PAP P G I
Sbjct: 73 GITRGAVSNAPAFEEVADKIFSILNGRIWAGHNIQRFDCVRIKEAFAEIGKPAPVPAGMI 132
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLP 188
DSL +LT+RFGRRAG+MKMA+LA YFGLG+Q HRSLDDVRMNLEVLK+CATVLFLES LP
Sbjct: 133 DSLGVLTERFGRRAGNMKMATLAAYFGLGKQKHRSLDDVRMNLEVLKHCATVLFLESCLP 192
Query: 189 DIFTVNSWVSPNA-TTRSRSNAK 210
+ W +P+ TRSRSN K
Sbjct: 193 SVSNAK-WCNPSTIVTRSRSNGK 214
>gi|449451459|ref|XP_004143479.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
gi|449504833|ref|XP_004162307.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
Length = 269
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 133/203 (65%), Positives = 160/203 (78%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+EI FFD+ETTVP R GQRF +LEFGAI+VCP KL EL +++TL+RP D ++ S R
Sbjct: 16 AEIVFFDLETTVPKRVGQRFRVLEFGAIVVCPMKLVELESFTTLIRPTDLSAVALRSSRP 75
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+GIT AV ++P F ++AD +F IL+GRIWAGHNI RFDC RI+EAFAEIGRPAP P G
Sbjct: 76 DGITRAAVATAPLFEEVADKIFSILNGRIWAGHNIRRFDCVRIKEAFAEIGRPAPIPVGM 135
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 187
+DSL +LT +FG+RAG+MKMASLA+YF LGQQ HRSLDDVRMNLEVLK+CATVLFLES+L
Sbjct: 136 VDSLGVLTNKFGKRAGNMKMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTL 195
Query: 188 PDIFTVNSWVSPNATTRSRSNAK 210
P I S TTRSR+N K
Sbjct: 196 PSILQEKWKTSSTKTTRSRANGK 218
>gi|356528495|ref|XP_003532838.1| PREDICTED: uncharacterized protein LOC100791906 [Glycine max]
Length = 276
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/221 (61%), Positives = 171/221 (77%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
Q EI FFD+ETTVP + G+RF +LEFGAI+V P KL E+ +Y+TL+RP D ++S S
Sbjct: 10 QQAPEIVFFDLETTVPKKGGERFWVLEFGAIVVTPHKLTEIESYTTLIRPKDLSVVSVKS 69
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R +GIT AV ++P+F D+AD +F IL+GR+WAGHNI RFDC RI+EAF +I RPAP P
Sbjct: 70 SRSDGITRKAVENAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIKEAFDDINRPAPVP 129
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
G IDSL +LT++FGRRAG+MKMA+LA+YFGLGQQ HRSLDDVRMNLEVLK+CATVLFLE
Sbjct: 130 VGIIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLE 189
Query: 185 SSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSS 225
SSLP++ S SP+ TRSRSN KS + + S P++
Sbjct: 190 SSLPNMLHSKSHGSPSVMTRSRSNGKSPCKEETSRKSPPAT 230
>gi|356511111|ref|XP_003524273.1| PREDICTED: uncharacterized protein LOC100805245 [Glycine max]
Length = 276
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 134/221 (60%), Positives = 168/221 (76%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
Q EI FFD+ETTVP R G+RF +LEFGAI+V P KL E+ +Y+TL+RP D ++S S
Sbjct: 10 QQALEIVFFDLETTVPKRGGERFWVLEFGAIVVTPHKLTEIESYTTLIRPKDLSVVSVKS 69
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R +GIT AV ++P+F D+AD +F IL+GR+WAGHNI RFDC RI+EAF +I R AP P
Sbjct: 70 SRSDGITRKAVENAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIKEAFNDINRSAPVP 129
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
G IDSL +LT++FGRRAG+MKMA+LA+YFGLGQQ HRSLDDVRMNLEVLK+CATVLFLE
Sbjct: 130 VGIIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLE 189
Query: 185 SSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSS 225
SSLP+ + S + TRSRS+ KS + + S P+S
Sbjct: 190 SSLPNTLHSKWYGSSSVMTRSRSDGKSPCKEETSRKSPPTS 230
>gi|449477209|ref|XP_004154961.1| PREDICTED: uncharacterized LOC101223607 [Cucumis sativus]
Length = 359
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/293 (53%), Positives = 202/293 (68%), Gaps = 13/293 (4%)
Query: 147 MASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPNATTRSR 206
MA+LA+YFG+GQQTHRSLDDVRMNLEVLKYCATVLFLESSLP++F NSWVSPNA TR R
Sbjct: 1 MATLASYFGIGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPEVFPENSWVSPNAVTRRR 60
Query: 207 SNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEIHPIFSLVTQGTAEVDSVLAVT 266
+ AKSSP+G S N ++ +S + P QG E HPI SLVT + + S+LA
Sbjct: 61 A-AKSSPQGNSSNNNSHASSSNIGGNPISLPVQQG--ETHPILSLVTICSEDRASILAEP 117
Query: 267 TADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCSTASVSEGSSG---YAGFME 323
+A + + F+M S+Q+ +L+ D ME+ + + + AS SE +S F+E
Sbjct: 118 SATESDSFNMHTTSDQITGATLETDINMEEHAT-----VSTEASPSEDTSTSLCTTKFLE 172
Query: 324 PDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRPRL 383
PD+VS+S I+ VP F GSQ +I+L H D LQL C+ L++RFGISTKF D AGRPRL
Sbjct: 173 PDQVSVSFITASFVPFFRGSQ--RIQLWHKDDCLQLLCNNLRVRFGISTKFTDYAGRPRL 230
Query: 384 SFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKGGFFNHPTARLQ 436
SFVVD+ +LCTVL+A + + ++L DSGS SEWR VTRK G+FN+PT RL
Sbjct: 231 SFVVDVPPNLCTVLEASDGVAQRLFSDSGSGSEWRPAVTRKNGYFNYPTMRLH 283
>gi|240256240|ref|NP_195691.4| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
gi|332661722|gb|AEE87122.1| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
Length = 255
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 166/229 (72%), Gaps = 10/229 (4%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+EI FFD+ET VP + GQ F ILEFGAI+VCPKKLEEL +++TL++P D ++S S R
Sbjct: 8 NEIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRS 67
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+GIT V ++P+F D+A+ + +L+GRIWAGHNI RFDC RI+EAFAEIG+ APEP G
Sbjct: 68 DGITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGI 127
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 187
IDSL LL+ +FG+RAG+MKMASLA YFGLG Q HRSLDDVRMNLEVLK+CATVLFLES+L
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTL 187
Query: 188 PDIFTVNSWVSPNATTRSRSN----------AKSSPEGTSQNLSTPSSK 226
P+ S TRSR N +K S E +QN+ SK
Sbjct: 188 PNHLEGKWHTSSKIMTRSRRNYQIAQRAMPYSKGSLEKMTQNVKNLLSK 236
>gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 227
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/201 (63%), Positives = 159/201 (79%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+EI FFD+ETTVP + GQ F ILEFGAI+VCP+KLEEL +++TL++P D ++S S R
Sbjct: 8 TEIVFFDLETTVPNKVGQYFHILEFGAIIVCPRKLEELESFTTLIQPKDLSVVSIRSSRS 67
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+GIT V ++P+F D+A+ ++ +L+GRIWAGHNI RFDC RI+EAFAEIG+ APEP G
Sbjct: 68 DGITRAKVTNAPSFEDVAEKIYGLLNGRIWAGHNIRRFDCIRIKEAFAEIGKAAPEPSGI 127
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 187
IDSL LL+ +FG+RAG+MKMASLA YFGLG Q HRSLDDVRMNLEVLK+CATVLFLES+L
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTL 187
Query: 188 PDIFTVNSWVSPNATTRSRSN 208
P+ S TRSRSN
Sbjct: 188 PNQLEGKWQSSSKIMTRSRSN 208
>gi|357519533|ref|XP_003630055.1| DNA polymerase III polC-type [Medicago truncatula]
gi|355524077|gb|AET04531.1| DNA polymerase III polC-type [Medicago truncatula]
Length = 281
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 129/220 (58%), Positives = 164/220 (74%), Gaps = 3/220 (1%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
EI FFD+ET VP + GQRF +LEFGAI+V KL E+ +Y+TL+RP D + S R +
Sbjct: 16 EIVFFDLETNVPKKIGQRFWVLEFGAIVVSAHKLSEIESYTTLIRPEDLSVAPMKSSRSD 75
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT +AV ++P F D+A+ +F IL+GR+WAGHNI RFDC RI+EAF I RPAP P G I
Sbjct: 76 GITREAVKNAPCFEDVAEKIFSILNGRVWAGHNIQRFDCVRIKEAFDGINRPAPVPVGII 135
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLP 188
DSL +LT++FGRRAG+MKMA+LA+YFGLGQQ HRSLDDVRMNLEV+K+CATVLFLES+LP
Sbjct: 136 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVVKHCATVLFLESTLP 195
Query: 189 DIFTVN--SWV-SPNATTRSRSNAKSSPEGTSQNLSTPSS 225
+ ++ W S + TRSR+N KS + S P+S
Sbjct: 196 NTLHIDKSKWYGSSSIMTRSRTNGKSPCREETSRKSPPAS 235
>gi|255547337|ref|XP_002514726.1| exonuclease, putative [Ricinus communis]
gi|223546330|gb|EEF47832.1| exonuclease, putative [Ricinus communis]
Length = 448
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/191 (69%), Positives = 156/191 (81%), Gaps = 3/191 (1%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLS- 64
RSEIAFFD+ETT+P + FAILEFGAILVCP+ L ELH Y+T V+PA DP LI S S
Sbjct: 11 RSEIAFFDLETTLPGE-CEGFAILEFGAILVCPRTLVELHTYATFVQPAADPSLIFSSSF 69
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
+R NGIT D +VS+PTF+DIADTV++IL+GR+WAGHN+ +FD +IREAFAEIGR P P
Sbjct: 70 LRSNGITYDNIVSAPTFSDIADTVYEILNGRLWAGHNVQKFDSVKIREAFAEIGRQPPVP 129
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
KG ID+ LLT +FGRRAGDMKMASLATYFGLG+QTHRSLDDVRMN++VLK CATVL L
Sbjct: 130 KGVIDTWELLTHKFGRRAGDMKMASLATYFGLGKQTHRSLDDVRMNVDVLKCCATVLLLV 189
Query: 185 SSLPDIFTVNS 195
+ LP F V +
Sbjct: 190 TILPYAFVVTN 200
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 114/172 (66%), Gaps = 6/172 (3%)
Query: 266 TTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCSTASVSEGSSGYAGFMEPD 325
+T QP PF L N+M SLQ D +E K ES E+ S+ +V EG SG+ GF+EPD
Sbjct: 203 STTFQPAPFSRGTLGNEMNIDSLQQDAAIEPKK--ESSEIPSSLTVPEGGSGHGGFLEPD 260
Query: 326 EVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRF-GISTKFVDQAGRPRLS 384
EVS+S I P G +Q++ LL+ DV LQL CS L++R+ G+STKF D AGRPRLS
Sbjct: 261 EVSVSFIRASFCPHSWG--VQRMVLLYKDVPLQLHCSHLRVRYNGLSTKFADYAGRPRLS 318
Query: 385 FVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKGGFFNHPTARLQ 436
FVVD +L ++LDAC+ I +K+ +SGSSS+W+HVVT K F N PT RL
Sbjct: 319 FVVDAPPNLYSILDACDKIAQKVSAESGSSSKWKHVVT-KHDFDNSPTVRLH 369
>gi|3080450|emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana]
gi|7270965|emb|CAB80644.1| hypothetical protein [Arabidopsis thaliana]
Length = 236
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/201 (63%), Positives = 156/201 (77%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+EI FFD+ET VP + GQ F ILEFGAI+VCPKKLEEL +++TL++P D ++S S R
Sbjct: 8 NEIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRS 67
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+GIT V ++P+F D+A+ + +L+GRIWAGHNI RFDC RI+EAFAEIG+ APEP G
Sbjct: 68 DGITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGI 127
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 187
IDSL LL+ +FG+RAG+MKMASLA YFGLG Q HRSLDDVRMNLEVLK+CATVLFLES+L
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTL 187
Query: 188 PDIFTVNSWVSPNATTRSRSN 208
P+ S TRSR N
Sbjct: 188 PNHLEGKWHTSSKIMTRSRRN 208
>gi|449533437|ref|XP_004173682.1| PREDICTED: uncharacterized protein LOC101223607, partial [Cucumis
sativus]
Length = 146
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 129/146 (88%), Positives = 137/146 (93%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
MGPT+DRSEIAFFDVETTVPTR GQ+F+ILEFGAILVCPKKL EL +YSTLV+P+D LI
Sbjct: 1 MGPTEDRSEIAFFDVETTVPTRQGQKFSILEFGAILVCPKKLVELESYSTLVKPSDLSLI 60
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
SSLSVRCNGIT DAV+SSPTFA IAD V+DILHGRIWAGHNILRFDCARIREAFAEIG P
Sbjct: 61 SSLSVRCNGITRDAVISSPTFAQIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGVP 120
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMK 146
APEPKGTIDSLALLTQRFGRRAGDMK
Sbjct: 121 APEPKGTIDSLALLTQRFGRRAGDMK 146
>gi|242086513|ref|XP_002439089.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
gi|241944374|gb|EES17519.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
Length = 319
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/183 (65%), Positives = 146/183 (79%), Gaps = 5/183 (2%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
EI FFDVETT PT P R+ +LEFGAILVCP+KL E+ +Y TL+RP D L +++ R +
Sbjct: 10 EIVFFDVETTAPT-PAGRWWLLEFGAILVCPRKLVEVASYDTLIRPGD--LSVAVTKRFS 66
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
+ +A+ S+P F D+AD +F+IL GR+WAGHNI RFDC RIREAFA+IGRPAPEP G I
Sbjct: 67 DV--EAIASAPPFKDVADKIFEILDGRVWAGHNIQRFDCPRIREAFADIGRPAPEPAGVI 124
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLP 188
DSL +L FGRRAGD+KMA+LATYFG+G+Q HRSLDD RMNLEVLK+CATVL LESSLP
Sbjct: 125 DSLNVLAADFGRRAGDLKMATLATYFGIGKQKHRSLDDARMNLEVLKHCATVLLLESSLP 184
Query: 189 DIF 191
+
Sbjct: 185 HVL 187
>gi|413942456|gb|AFW75105.1| hypothetical protein ZEAMMB73_060834 [Zea mays]
Length = 308
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/189 (65%), Positives = 148/189 (78%), Gaps = 7/189 (3%)
Query: 4 TQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSL 63
T R EI F DVETT PT G R+ +LEFGAILVCP+KL E+ +Y TL+RP D +S++
Sbjct: 3 TTSRDEIVFLDVETTAPTSAG-RWWLLEFGAILVCPRKLVEVGSYDTLIRPGD---LSAV 58
Query: 64 SVR-CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
S R +G+ +A+ S+P F D+AD +F IL GR+WAGHNI RFDC RIREAFA+IGRPAP
Sbjct: 59 SRRFTDGV--EAIASAPPFKDVADKIFGILDGRVWAGHNIQRFDCPRIREAFADIGRPAP 116
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLF 182
EP G IDSL +L FGRRAGD+KMA+LATYFG+G+Q HRSLDD RMNLEVLK+CATVL
Sbjct: 117 EPAGVIDSLNVLAAEFGRRAGDLKMATLATYFGIGKQKHRSLDDARMNLEVLKHCATVLL 176
Query: 183 LESSLPDIF 191
LESSLP +
Sbjct: 177 LESSLPHVL 185
>gi|226493850|ref|NP_001151909.1| exonuclease [Zea mays]
gi|195650883|gb|ACG44909.1| exonuclease [Zea mays]
gi|413950294|gb|AFW82943.1| exonuclease [Zea mays]
Length = 302
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 127/207 (61%), Positives = 153/207 (73%), Gaps = 6/207 (2%)
Query: 7 RSEIAFFDVETTVPTRPG-QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
R EI FFDVETT P+ G R+ +LEFGAILVCP+KL E+ +Y TL+RP D +S++S
Sbjct: 4 RDEIVFFDVETTAPSAAGPGRWWLLEFGAILVCPRKLVEVGSYDTLIRPGD---LSAVSR 60
Query: 66 RCNGITPDAVVSS-PTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R A+++S P F D+AD +FDIL GR+WAGHNI RFDC RIREAFA+IGRPAPEP
Sbjct: 61 RFTDDVEAAIMASAPPFKDVADKIFDILDGRVWAGHNIQRFDCPRIREAFADIGRPAPEP 120
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
G IDSL +L FGRRAGD+KMA+LATYFG+G+Q HR LDD RMNLEVLK+CATVL LE
Sbjct: 121 VGVIDSLNVLAAHFGRRAGDLKMATLATYFGIGKQKHRGLDDARMNLEVLKHCATVLLLE 180
Query: 185 SSLPDIFTVNSWVSPNATTRSRSNAKS 211
SSLPD+ A TR S A++
Sbjct: 181 SSLPDVLCAQQ-SRRAAVTRRTSQAQT 206
>gi|242035185|ref|XP_002464987.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
gi|241918841|gb|EER91985.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
Length = 435
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/215 (56%), Positives = 157/215 (73%), Gaps = 7/215 (3%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSV 65
R EI F DVET+ P R +LEFGA++VC ++L ++ +Y+TLVRPADP+ + +
Sbjct: 17 REEIVFLDVETSTPPR-----VLLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTA 71
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
RC+GIT DAV +P F D+AD V+D+LHGR+WAGHNI++FD IR+AFAEIGRP PEPK
Sbjct: 72 RCSGITRDAVADAPPFRDVADKVYDVLHGRVWAGHNIVKFDSVIIRDAFAEIGRPPPEPK 131
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
G +D+L LLTQ FG RAGDMK+ASLA YFGLG+Q HRSLDDV+MN++VLK CATVLFLE
Sbjct: 132 GMVDTLPLLTQWFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVLKNCATVLFLEE 191
Query: 186 SLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNL 220
SL + V + + AT R++ + + S L
Sbjct: 192 SLRGVLPVQNMLE-GATIRTQGTSDPATNRDSNEL 225
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 312 SEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGIS 371
+ S G++GF+E D+VS+ SI V+ L S + I L H L L C+ L++R+ +S
Sbjct: 243 ARSSIGFSGFVEVDDVSIESIKISVMLLQHRSGPRTI-LQHKGAQLHLSCADLEVRW-VS 300
Query: 372 TKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVVTRKGGFFNHP 431
+K + RP+LS VDI +L VL C+ + + + SSS W+ ++ R G N P
Sbjct: 301 SKVL----RPQLSIRVDIPDNLSKVLVFCDNLAQSSSPEGRSSSPWKPLIKRYGN-ANRP 355
Query: 432 TARLQ 436
T RL
Sbjct: 356 TVRLN 360
>gi|222629868|gb|EEE62000.1| hypothetical protein OsJ_16781 [Oryza sativa Japonica Group]
Length = 252
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/249 (48%), Positives = 166/249 (66%), Gaps = 7/249 (2%)
Query: 7 RSEIAFFDVETTVPTR-PGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
R E+ FFDVETT + GQR ++LEFGAI+VCP++L E+ +Y T++RP D +S++S
Sbjct: 3 RPEMVFFDVETTAASADEGQR-SVLEFGAIVVCPRRLVEVDSYHTVIRPGD---MSAVSK 58
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
R + V S+P+F +A+ +F +L GR+WAGHNI RFDC RIREAFA IGR APEP
Sbjct: 59 RFAAMVDVDVASAPSFDQVAERIFGVLDGRVWAGHNIQRFDCHRIREAFAAIGRAAPEPV 118
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
+DSL +L FGRRAGD+KMA+LA+YFG+G+Q+HRSLDD RMNLEVLK CAT+L LES
Sbjct: 119 AIVDSLNVLAHDFGRRAGDLKMATLASYFGIGKQSHRSLDDARMNLEVLKRCATLLLLES 178
Query: 186 SLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEI 245
+LP +S + + TR RSN + P +S TPS + + + + P
Sbjct: 179 TLPPGMLHSS--AAGSITRKRSNHQEEPSSSSLVNVTPSKRKQRQGSGGKIRPKAATTTP 236
Query: 246 HPIFSLVTQ 254
P F ++ +
Sbjct: 237 KPCFHMILR 245
>gi|302823961|ref|XP_002993628.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
gi|300138556|gb|EFJ05320.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
Length = 175
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/175 (62%), Positives = 137/175 (78%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
EI F+DVETTVP GQ + ILEFGA++V + LEEL +++TLVRP+ L+S SV CN
Sbjct: 1 EIVFYDVETTVPEVKGQGYEILEFGAVVVSARGLEELDSFTTLVRPSSLALVSPRSVSCN 60
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI D++V +P+F +IAD V +LHGR+WAGHNILRFD RI+EAFA IGR PE G I
Sbjct: 61 GIVQDSLVGAPSFLEIADRVHALLHGRVWAGHNILRFDNLRIKEAFASIGRAGPEAAGHI 120
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFL 183
D+ LL + FG+RAG++KMA+LA+YFGLG+Q HRSL DVRMN+EVLK CATVLFL
Sbjct: 121 DTFPLLRKSFGQRAGNLKMATLASYFGLGKQEHRSLADVRMNIEVLKLCATVLFL 175
>gi|302782960|ref|XP_002973253.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
gi|300159006|gb|EFJ25627.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
Length = 175
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/175 (62%), Positives = 136/175 (77%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
EI F+DVETTVP GQ + ILEFGA++V + L EL +++TLVRP+ L+S SV CN
Sbjct: 1 EIVFYDVETTVPEVKGQGYDILEFGAVVVSARGLGELDSFTTLVRPSSLALVSPRSVSCN 60
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI D++V +P+F +IAD V +LHGR+WAGHNILRFD RI+EAFA IGR PE G I
Sbjct: 61 GIVQDSLVGAPSFLEIADRVHALLHGRVWAGHNILRFDNLRIKEAFASIGRAGPEAAGHI 120
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFL 183
D+ LL + FG+RAG++KMA+LA+YFGLG+Q HRSL DVRMN+EVLK CATVLFL
Sbjct: 121 DTFPLLRKSFGQRAGNLKMATLASYFGLGKQEHRSLADVRMNIEVLKLCATVLFL 175
>gi|255576154|ref|XP_002528971.1| exonuclease, putative [Ricinus communis]
gi|223531561|gb|EEF33390.1| exonuclease, putative [Ricinus communis]
Length = 194
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 101/163 (61%), Positives = 130/163 (79%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
SEI FFD+ETTVP R G RF +LEFGAI+VCP+KL E+ +Y+TL+RP D +++ S R
Sbjct: 13 SEIVFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLIRPKDLSVVALRSGRS 72
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT +AV +P F +++D ++ IL+GRIWAGHNI RFDC RI+EAFAE+G+ P P G
Sbjct: 73 GGITRNAVADAPAFEEVSDKIYSILNGRIWAGHNIRRFDCIRIKEAFAELGKDPPVPVGM 132
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMN 170
IDSL +L+Q+FGRRAG++KMA+LA YFGLGQQ HRSLDDVR+
Sbjct: 133 IDSLGVLSQKFGRRAGNLKMATLADYFGLGQQKHRSLDDVRIK 175
>gi|218184498|gb|EEC66925.1| hypothetical protein OsI_33530 [Oryza sativa Indica Group]
Length = 422
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/198 (56%), Positives = 147/198 (74%), Gaps = 3/198 (1%)
Query: 4 TQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHN-YSTLVRPADPELISS 62
++ EIAFFDVET++P P +R +LEFG+I +CP++L E+ + TLVRP+D +++
Sbjct: 17 VEEEPEIAFFDVETSMPWGPRERRTLLEFGSIFLCPRQLVEVAEPFITLVRPSDLGVVTE 76
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
R GIT A+ +P F D+AD + ++LHGRIWAGHNI+ FD IREAFAEIGR P
Sbjct: 77 ALER-KGITRGALEDAPPFCDVADNIHNVLHGRIWAGHNIISFDSEIIREAFAEIGRSPP 135
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLF 182
EPKG ID+L LLTQ FGRRAG+MKMA+LA YF LG Q HRSL DVRMNL+VLK C+TVLF
Sbjct: 136 EPKGMIDTLPLLTQTFGRRAGNMKMANLADYFNLGPQIHRSLYDVRMNLDVLKCCSTVLF 195
Query: 183 LESSLPDIFTVNSWVSPN 200
LE + P++ + +++PN
Sbjct: 196 LEDNFPELLS-GGFLNPN 212
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 352 HNDVILQLCCSRLKIRFGISTKFVDQAGRP-RLSFVVDISQSLCTVLDACEVIVRKLVED 410
HND LQL C L++R+ + + D GRP +LS VVDI ++L VL+ C+ I
Sbjct: 255 HNDNPLQLRCIGLRVRYEVCL-YQDSEGRPNKLSIVVDIPENLRQVLEFCDEIAEITFRK 313
Query: 411 SGSSSEWRHVVTRKGGFFNHPTARLQ 436
GS+SEWR V+ G N P+ RL
Sbjct: 314 FGSNSEWRQVIKEYG---NRPSVRLN 336
>gi|195657335|gb|ACG48135.1| hypothetical protein [Zea mays]
Length = 458
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 145/203 (71%), Gaps = 7/203 (3%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
DR EI F DVET+ P +LEFGA++VC ++L E+ +++TLVRPA+ + + +
Sbjct: 11 DREEIVFLDVETSTPP-----CVLLEFGAVVVCSRRLVEVSSFATLVRPANLDALPDPTA 65
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
R NGIT + +P F D+AD V+D+LHGR+WAGHNI+ FD I +AFAEIGRP P+PK
Sbjct: 66 RSNGITRGTLADAPPFGDVADMVYDVLHGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPK 125
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
ID+L LLTQ FG RAGDMK+ASLA YFGLG+Q HRSLDDV+MN++V K CATVLFLE
Sbjct: 126 AMIDTLPLLTQCFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVFKNCATVLFLEE 185
Query: 186 SLPDIF--TVNSWVSPNATTRSR 206
SL + TV + S A R++
Sbjct: 186 SLRGVRVPTVQNMSSGGAKIRTQ 208
>gi|224029725|gb|ACN33938.1| unknown [Zea mays]
gi|414867639|tpg|DAA46196.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
Length = 457
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 146/203 (71%), Gaps = 7/203 (3%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
DR EI F DVET+ P +LEFGA++VC ++L ++ +++TLVRPA+ + + +
Sbjct: 11 DREEIVFLDVETSTPP-----CVLLEFGAVVVCSRRLVDVSSFATLVRPANLDALPDPTA 65
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
R NGIT + +P F D+AD V+D+LHGR+WAGHNI+ FD I +AFAEIGRP P+PK
Sbjct: 66 RSNGITRGTLADAPPFRDVADMVYDVLHGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPK 125
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
ID+L LLTQ FG RAGDMK+ASLA YFGLG+Q HRSLDDV+MN++V K CATVLFLE
Sbjct: 126 AMIDTLPLLTQCFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVFKNCATVLFLEE 185
Query: 186 SLPDIF--TVNSWVSPNATTRSR 206
SL + TV + S AT R++
Sbjct: 186 SLRGVRVPTVQNMSSGGATIRTQ 208
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 315 SSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKF 374
S ++GF+E D+VS SI PLF + + H LQL C L++ + + F
Sbjct: 252 SGAFSGFVELDDVSTESIKISA-PLFLRPFGPRAIVQHKGSPLQLICPGLEVLWVNTKGF 310
Query: 375 VDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSG-----SSSEWRHVVTR 423
+ RP++ VDI ++L VL C+ + + G S+S W+ ++ R
Sbjct: 311 PNSPHRPKVGIKVDIPENLSKVLGFCDDLAQSSSSSPGPGAICSNSRWKSLIER 364
>gi|15451562|gb|AAK98686.1|AC021893_20 Putative exonuclease [Oryza sativa Japonica Group]
gi|31432000|gb|AAP53699.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
gi|222612804|gb|EEE50936.1| hypothetical protein OsJ_31475 [Oryza sativa Japonica Group]
Length = 436
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/189 (57%), Positives = 139/189 (73%), Gaps = 1/189 (0%)
Query: 4 TQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSL 63
++ EIAFFDVET++P P +R +LEFG+I +CP+ +E + TLVRP+D +++
Sbjct: 17 VEEEPEIAFFDVETSMPWGPRERRTLLEFGSIFLCPRLVEVAEPFVTLVRPSDLGVVTEA 76
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
R GIT A+ +P F D+AD + ++LHGRIWAGHNI+ FD IREAFAEIGR PE
Sbjct: 77 LER-KGITRGALEDAPPFCDVADNIHNVLHGRIWAGHNIISFDSEIIREAFAEIGRSPPE 135
Query: 124 PKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFL 183
PKG ID+L LLTQ FGRRAG+MKMA+LA YF LG Q HRSL DVRMNL+VLK C+TVLFL
Sbjct: 136 PKGMIDTLPLLTQTFGRRAGNMKMANLADYFNLGPQIHRSLYDVRMNLDVLKCCSTVLFL 195
Query: 184 ESSLPDIFT 192
E + P + +
Sbjct: 196 EDNFPKLLS 204
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 22/135 (16%)
Query: 319 AGFMEPDEVSLS---------------SISDGVV--PLFPGSQIQKIKLLHNDVILQLCC 361
GF+ P+++SL S++ G+ PL P + + + HND LQL C
Sbjct: 216 GGFLNPNDISLEFIQVSISFSSCLGKRSLNSGLRTNPL-PYEFERSLCIKHNDDPLQLHC 274
Query: 362 SRLKIRFGISTKFVDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVV 421
L++ + +S + GRP+LS VVDI ++L VL+ C+ I + + GS+SEWR V+
Sbjct: 275 IGLRVHYEVSLN-QNSEGRPKLSIVVDIPENLRQVLEFCDEIAKTTFREFGSTSEWRQVI 333
Query: 422 TRKGGFFNHPTARLQ 436
G N P RL
Sbjct: 334 KEYG---NRPCVRLN 345
>gi|357130185|ref|XP_003566731.1| PREDICTED: uncharacterized protein LOC100832440 [Brachypodium
distachyon]
Length = 265
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/203 (52%), Positives = 140/203 (68%), Gaps = 7/203 (3%)
Query: 9 EIAFFDVETTV-PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR- 66
E+ FFDVET P+ ++ ILEFGAILVCP++L EL +YSTL+RP DP+ +++S R
Sbjct: 9 EMVFFDVETAAAPSSCSHQWWILEFGAILVCPRRLLELSSYSTLIRPDDPQ--AAISKRF 66
Query: 67 CNGITPDA---VVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+ I D+ S+PTF+++A + +LHGR+WAGHNI RFD R+R AFA G P PE
Sbjct: 67 LDSIPSDSGQDHSSAPTFSEVAGEIHALLHGRVWAGHNIRRFDVPRLRAAFAAAGLPPPE 126
Query: 124 PKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFL 183
P +DSL LL FGRRAGD+KMA+LA YFG+G+Q HR LDD RMNLEV+K+CA VL L
Sbjct: 127 PAAVVDSLDLLASEFGRRAGDLKMATLAAYFGIGKQRHRGLDDARMNLEVIKHCAAVLLL 186
Query: 184 ESSLPDIFTVNSWVSPNATTRSR 206
ES+LP + + + + R
Sbjct: 187 ESTLPGLLAAAGVIHKGNSCKKR 209
>gi|300681549|emb|CBH32646.1| exonuclease, putative [Triticum aestivum]
Length = 283
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/190 (60%), Positives = 145/190 (76%), Gaps = 8/190 (4%)
Query: 4 TQDRSEIAFFDVETTV---PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
T+ + E+ FFDVET PT ++ +LEFGAILVCP++L EL +YSTL+RP DP
Sbjct: 3 TEAKEEMVFFDVETAAAPSPTDASTQWWLLEFGAILVCPRRLVELSSYSTLIRPGDP--- 59
Query: 61 SSLSVRCNG--ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
+++S R +G A ++P FAD+AD +F +LHGR+WAGHNI RFDC R+R+AFA G
Sbjct: 60 AAVSRRFSGDPALSAAFRAAPPFADVADDIFALLHGRVWAGHNIRRFDCHRVRDAFAAAG 119
Query: 119 RPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCA 178
R APEP +DSL++L Q FGRRAGD+KMA+LA YFG+G+QTHRSLDDVRMNLEVLK+CA
Sbjct: 120 RAAPEPVAVVDSLSVLAQGFGRRAGDLKMATLAAYFGIGKQTHRSLDDVRMNLEVLKHCA 179
Query: 179 TVLFLESSLP 188
VL LES+LP
Sbjct: 180 AVLMLESNLP 189
>gi|383100770|emb|CCG48001.1| exonuclease, putative [Triticum aestivum]
Length = 282
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 113/193 (58%), Positives = 143/193 (74%), Gaps = 8/193 (4%)
Query: 1 MGPTQDRSEIAFFDVETTV---PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP 57
M + E+ FFDVET P+ ++ +LEFGAILVCP++L EL +YSTL+RP DP
Sbjct: 1 MATEAAKEEMVFFDVETAAAPSPSDSSGQWWLLEFGAILVCPRRLVELASYSTLIRPGDP 60
Query: 58 ELISSLSVRCNG--ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA 115
S++S R +G A ++P FAD+AD +F +L GR+WAGHNI RFDC R+REAFA
Sbjct: 61 ---SAVSRRFSGDPSLSAAFRAAPPFADVADDIFALLDGRVWAGHNIRRFDCHRVREAFA 117
Query: 116 EIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK 175
GR APEP +DSL++L + FGRRAGD+KMA+LA YFG+G+QTHRSLDDVRMNLEVLK
Sbjct: 118 AAGRAAPEPVAVVDSLSVLARGFGRRAGDLKMATLAAYFGIGKQTHRSLDDVRMNLEVLK 177
Query: 176 YCATVLFLESSLP 188
+CA VL LES+LP
Sbjct: 178 HCAAVLMLESNLP 190
>gi|302769470|ref|XP_002968154.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
gi|300163798|gb|EFJ30408.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
Length = 168
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 108/175 (61%), Gaps = 10/175 (5%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
EI F+D+ET++P Q ILEFGA+++ K L E+ +Y+T VRP+ N
Sbjct: 2 EIVFYDLETSMPEGKEQSREILEFGAVVLSAKGLVEVDSYTTPVRPSV----------MN 51
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
S I + GRIWAGHNI FD RI EAFA IGRP PE G I
Sbjct: 52 SRNAAGTSSGALRLLIESMSYCTQAGRIWAGHNICEFDNVRIEEAFASIGRPMPEAAGFI 111
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFL 183
D+L LL + FG+RAG++K+++LA YF LG+Q HRSL DVRMN++VLK CATVL L
Sbjct: 112 DTLPLLQRTFGQRAGNLKLSTLAAYFSLGKQEHRSLPDVRMNIKVLKRCATVLLL 166
>gi|194698552|gb|ACF83360.1| unknown [Zea mays]
gi|195655181|gb|ACG47058.1| hypothetical protein [Zea mays]
gi|414867638|tpg|DAA46195.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
Length = 366
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 90/117 (76%), Gaps = 2/117 (1%)
Query: 92 LHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLA 151
+HGR+WAGHNI+ FD I +AFAEIGRP P+PK ID+L LLTQ FG RAGDMK+ASLA
Sbjct: 1 MHGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMIDTLPLLTQCFGPRAGDMKLASLA 60
Query: 152 TYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIF--TVNSWVSPNATTRSR 206
YFGLG+Q HRSLDDV+MN++V K CATVLFLE SL + TV + S AT R++
Sbjct: 61 NYFGLGKQRHRSLDDVKMNIDVFKNCATVLFLEESLRGVRVPTVQNMSSGGATIRTQ 117
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 315 SSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKF 374
S ++GF+E D+VS SI PLF + + H LQL C L++ + + F
Sbjct: 161 SGAFSGFVELDDVSTESIKISA-PLFLRPFGPRAIVQHKGSPLQLICPGLEVLWVNTKGF 219
Query: 375 VDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSG-----SSSEWRHVVTR 423
+ RP++ VDI ++L VL C+ + + G S+S W+ ++ R
Sbjct: 220 PNSPHRPKVGIKVDIPENLSKVLGFCDDLAQSSSSSPGPGAICSNSRWKSLIER 273
>gi|226503946|ref|NP_001140253.1| uncharacterized protein LOC100272294 [Zea mays]
gi|194698700|gb|ACF83434.1| unknown [Zea mays]
gi|223944519|gb|ACN26343.1| unknown [Zea mays]
gi|414867636|tpg|DAA46193.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
gi|414867637|tpg|DAA46194.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
Length = 370
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 88/115 (76%), Gaps = 2/115 (1%)
Query: 94 GRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATY 153
GR+WAGHNI+ FD I +AFAEIGRP P+PK ID+L LLTQ FG RAGDMK+ASLA Y
Sbjct: 7 GRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMIDTLPLLTQCFGPRAGDMKLASLANY 66
Query: 154 FGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIF--TVNSWVSPNATTRSR 206
FGLG+Q HRSLDDV+MN++V K CATVLFLE SL + TV + S AT R++
Sbjct: 67 FGLGKQRHRSLDDVKMNIDVFKNCATVLFLEESLRGVRVPTVQNMSSGGATIRTQ 121
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 315 SSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKF 374
S ++GF+E D+VS SI PLF + + H LQL C L++ + + F
Sbjct: 165 SGAFSGFVELDDVSTESIKISA-PLFLRPFGPRAIVQHKGSPLQLICPGLEVLWVNTKGF 223
Query: 375 VDQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSG-----SSSEWRHVVTR 423
+ RP++ VDI ++L VL C+ + + G S+S W+ ++ R
Sbjct: 224 PNSPHRPKVGIKVDIPENLSKVLGFCDDLAQSSSSSPGPGAICSNSRWKSLIER 277
>gi|326529009|dbj|BAK00898.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 305
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 130/226 (57%), Gaps = 23/226 (10%)
Query: 4 TQDRSEIAFFDVETTVP-TRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
T + E+ FFDVE P + P ++EF AILVCP++L E+ +YSTL+R P+ +
Sbjct: 3 TTKKREMVFFDVEAAQPPSCPSGECRLVEFAAILVCPRRLVEVSSYSTLIRQDHPDADEN 62
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
SV A ++P F D+ +F++L GR+WAGH I R CAR+R AFA G PAP
Sbjct: 63 SSV-----LLSAASAAPAFEDVFPDIFELLDGRVWAGHGIRRSGCARVRGAFAAFGLPAP 117
Query: 123 EPKGTIDSLALLTQR--FGRRAGDMKMASLATYFGLGQQTHRS---LDDVRMNLEVLKYC 177
EP G +DSL +L + FG+ D + A+LA +FG+G + R LD R++L+VLK+C
Sbjct: 118 EPVGVVDSLDVLVAQGCFGQ---DEEAAALAEHFGVGVRRARGLRCLDGARLSLDVLKHC 174
Query: 178 ATVLFLESSL-PDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLST 222
A VL +ESSL D+ P TR A S P S N +T
Sbjct: 175 AGVLLIESSLRGDV--------PAGATRVSKPATSKPSSDSNNNNT 212
>gi|242052651|ref|XP_002455471.1| hypothetical protein SORBIDRAFT_03g011452 [Sorghum bicolor]
gi|241927446|gb|EES00591.1| hypothetical protein SORBIDRAFT_03g011452 [Sorghum bicolor]
Length = 142
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 80/96 (83%), Gaps = 1/96 (1%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP-ELISSLSVRC 67
E+AFFDVET++P R Q +A+LEFGA+LVCP++L E+ +Y+TLVRPADP +S+ SVRC
Sbjct: 47 EMAFFDVETSMPQRADQGYALLEFGAVLVCPRRLVEVASYATLVRPADPVSAVSAASVRC 106
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNIL 103
NGIT DAV +P F D+AD V+D+L+GR+WAGHNI+
Sbjct: 107 NGITRDAVSGAPPFRDVADAVYDLLNGRVWAGHNIV 142
>gi|297814576|ref|XP_002875171.1| hypothetical protein ARALYDRAFT_346774 [Arabidopsis lyrata subsp.
lyrata]
gi|297321009|gb|EFH51430.1| hypothetical protein ARALYDRAFT_346774 [Arabidopsis lyrata subsp.
lyrata]
Length = 267
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 101/186 (54%), Gaps = 13/186 (6%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P DR + F D+E ++ ++EF ++V K LE ++NY T ++P+D ++S
Sbjct: 65 PNADR--LLFLDLEF-------EKEDVIEFAVLIVDSKTLEAVYNYETFIKPSDG-VVSK 114
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA- 121
R NGIT + +PTF D+ + +F +LHG IW GHNI+R D + + + P
Sbjct: 115 FRDRPNGITKAKLQRAPTFLDVHEDIFKVLHGGIWIGHNIIRTDIPLLLKMYRRHNLPEK 174
Query: 122 --PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCAT 179
P + ID+L L F + +K+ L +F L +QTHRSL+D +NL+V K C
Sbjct: 175 RIPSFRYKIDTLKWLEGNFLGKTQGLKLNELGKFFKLEEQTHRSLEDCDLNLQVFKLCLC 234
Query: 180 VLFLES 185
V+ +E
Sbjct: 235 VIGMEK 240
>gi|297814554|ref|XP_002875160.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320998|gb|EFH51419.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 101/186 (54%), Gaps = 13/186 (6%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P DR + F D+E ++ ++EF ++V K LE ++NY T ++P+D ++S
Sbjct: 64 PNADR--LLFLDLEF-------EKEDVIEFAVLIVDSKTLEAVYNYETFIKPSDG-VVSK 113
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA- 121
R NGIT + +PTF D+ + +F +LHG IW GHNI+R D + + + P
Sbjct: 114 FRDRPNGITKAKLQRAPTFLDVHEDIFKVLHGGIWIGHNIIRTDIPLLLKMYRRHNLPEK 173
Query: 122 --PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCAT 179
P + ID+L L F + +K+ L +F L +QTHRSL+D +NL+V K C
Sbjct: 174 RIPSFRYKIDTLKWLEGNFLGKTQGLKLNELGKFFKLEEQTHRSLEDCDLNLQVFKLCLC 233
Query: 180 VLFLES 185
V+ +E
Sbjct: 234 VIGMEK 239
>gi|302773940|ref|XP_002970387.1| hypothetical protein SELMODRAFT_411374 [Selaginella moellendorffii]
gi|300161903|gb|EFJ28517.1| hypothetical protein SELMODRAFT_411374 [Selaginella moellendorffii]
Length = 319
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 129/303 (42%), Gaps = 78/303 (25%)
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
PE G ID+L LL + FG+RA ++K+++LA YF LG+Q HRSL DVRMN++VLK CATVL
Sbjct: 2 PEAAGFIDTLPLLQRTFGQRARNLKLSTLAAYFSLGKQEHRSLPDVRMNIKVLKRCATVL 61
Query: 182 FLESSLPDIFTVNSWVSPNA-TTRSRSNAKSSPEGTSQNLSTPSSKFKFENAS-NASPPD 239
LES+ P +F SP A R RS+ + LS + + E A P
Sbjct: 62 LLESNFPHLFQ----SSPQAPQKRRRSSYGGGDDFRLVTLSLEEAMLQLEGGECEAIDPK 117
Query: 240 QGKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSA 299
EE EV L T + N F LQP + + D
Sbjct: 118 MQNEE------------QEVKRKLKFETGEDHNRF-------------LQPHEVLLD--- 149
Query: 300 PESREMCSTASVSEGSSGYAGFMEPDEVSLSSISDG---VVPLFPGSQIQKIKLLHNDVI 356
S+ ++ DG V+P F GS N +
Sbjct: 150 ----------------------------SVGAVYDGGPSVIP-FHGS---------NRLC 171
Query: 357 LQLCCSRLKIRFGISTKFV-DQAGRPRLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSS 415
+Q S K++F +S ++ + G P V+ S L ++ CE V+ G ++
Sbjct: 172 VQADNS--KVKFSVSDRYAFSETGMPTFKIVIIPSAELLAIVKHCEAAVKNKCALFGINA 229
Query: 416 EWR 418
+W+
Sbjct: 230 KWQ 232
>gi|413942181|gb|AFW74830.1| hypothetical protein ZEAMMB73_687643 [Zea mays]
Length = 722
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 119/267 (44%), Gaps = 60/267 (22%)
Query: 144 DMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPNATT 203
DM +ASLA YFGLG+Q HRSLDDV+MN++VLK CATVLF LP F + S+
Sbjct: 408 DM-LASLANYFGLGKQRHRSLDDVKMNIDVLKNCATVLF----LPHFFVLISF------- 455
Query: 204 RSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEIHPIFSLVTQGTAEVDSVL 263
+ + + T Q +S+ S P ++ + LV G++ V+ ++
Sbjct: 456 -KQESLRGVGVPTVQEMSSGGGGATIRTQGITSDPAPNRDNPNESL-LVGLGSSHVEEMM 513
Query: 264 AVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCSTASVSEGSSGYAGFME 323
TT ++Q DDT S ++GF+E
Sbjct: 514 LDTTI------------------TVQTDDT-------------------RSSGAFSGFVE 536
Query: 324 PDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSRLKIRFGISTKFVDQAGRPRL 383
D+VS SI P + +Q H LQL C L++R+ + F + RP++
Sbjct: 537 LDDVSTESIKISG----PRAIVQ-----HKGSPLQLICPGLEVRWVNTKGFPNSPHRPKV 587
Query: 384 SFVVDISQSLCTVLDACEVIVRKLVED 410
S V I ++L + + IV + +E+
Sbjct: 588 SIKVHIPENLSKFISGKDYIVTESLEE 614
>gi|297814534|ref|XP_002875150.1| hypothetical protein ARALYDRAFT_904518 [Arabidopsis lyrata subsp.
lyrata]
gi|297320988|gb|EFH51409.1| hypothetical protein ARALYDRAFT_904518 [Arabidopsis lyrata subsp.
lyrata]
Length = 493
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AFFD + R +L F + C + L + + V+ D + +
Sbjct: 8 VAFFDFKDG-------RDGLLHFSGMTACSETLSVITRHRFCVQATDN------TGKPAS 54
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
TP + PT +V+ ILH + W GH ++ D A++ E F IG+P+P+PKG ID
Sbjct: 55 TTPARDKNKPTLDRYYKSVYFILHDKFWIGHGLVNSDWAKLEEEFNHIGKPSPKPKGIID 114
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
++ ++ K+A LA FGLG+ + ++ N + +K C +
Sbjct: 115 TVPFIS-------SGTKLAQLAVLFGLGEPSLGYYNNCEENYDAIKQCRDAM 159
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
+L FG + V K LE + V+ + ++ R TP + + PT ++ +
Sbjct: 250 GLLHFGGMEVTSKTLEFITETRFCVQ------ATQINGRPARNTPAWLKNEPTLSESYNR 303
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKM 147
V+ +LH + W GH++ + D + + IG+ P PK ID++ ++ K+
Sbjct: 304 VYYMLHNKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEIIDTVPFIS-------SGSKL 356
Query: 148 ASLATYFGLGQQTHRSLD--DVRMNLEVLKYCATVL 181
LA GLG+ R LD + ++N +K C +
Sbjct: 357 GKLAVLLGLGKPAAR-LDCRNCQVNYNAIKKCRDAM 391
>gi|297814532|ref|XP_002875149.1| hypothetical protein ARALYDRAFT_346764 [Arabidopsis lyrata subsp.
lyrata]
gi|297320987|gb|EFH51408.1| hypothetical protein ARALYDRAFT_346764 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AFFD + R +L F + C + L + V+ D + +
Sbjct: 8 VAFFDFKDG-------RDGLLHFSGMTACSETLSVITRRRFCVQATDN------TGKPAS 54
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
TP + PT +V+ ILH + W GH ++ D A++ E F IG+P+P+PKG ID
Sbjct: 55 TTPARDKNKPTLDRYYKSVYFILHDKFWIGHGLVNSDWAKLEEEFNHIGKPSPKPKGIID 114
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
S+ ++ K+A LA FGLG+ + ++ N + +K C +
Sbjct: 115 SVPFIS-------SGTKLAQLAVLFGLGEPSLGYYNNCEENYDAIKQCRDAM 159
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
+L FG + V K LE + V+ + ++ R TP + + PT ++ +
Sbjct: 250 GLLHFGGMEVTSKTLEFITETRFCVQ------ATQINGRPARNTPAWLKNEPTLSESYNR 303
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKM 147
V+ +LH + W GH++ + D + + IG+ P PK ID++ ++ K+
Sbjct: 304 VYYMLHNKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEIIDTVPFIS-------SGSKL 356
Query: 148 ASLATYFGLGQQTHRSLD--DVRMNLEVLKYCATVL 181
LA GLG+ R LD + ++N +K C +
Sbjct: 357 GKLAVLLGLGKPAAR-LDCRNCQVNYNAIKKCRDAM 391
>gi|297800934|ref|XP_002868351.1| hypothetical protein ARALYDRAFT_355460 [Arabidopsis lyrata subsp.
lyrata]
gi|297314187|gb|EFH44610.1| hypothetical protein ARALYDRAFT_355460 [Arabidopsis lyrata subsp.
lyrata]
Length = 179
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AFFD + R +L F + C + L + + V+ D + +
Sbjct: 8 VAFFDFKD-------GRDGLLHFSGMTACSETLSVITRHRFCVQATDN------TGKPAS 54
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
TP + PT +V+ ILH + W GH ++ D A++ E F IG+P+P+PKG ID
Sbjct: 55 TTPARDKNKPTLDRYYKSVYFILHDKFWIGHGLVNSDWAKLEEEFNHIGKPSPKPKGIID 114
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
++ ++ K+A LA FGLG+ + ++ N + +K C
Sbjct: 115 TVPFISS-------GTKLAQLAVLFGLGEPSLGYYNNCEENYDAIKQC 155
>gi|297814530|ref|XP_002875148.1| hypothetical protein ARALYDRAFT_904512 [Arabidopsis lyrata subsp.
lyrata]
gi|297320986|gb|EFH51407.1| hypothetical protein ARALYDRAFT_904512 [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AFFD + R +L F + C + L + V+ D + +
Sbjct: 8 VAFFDFKDG-------RDGLLHFSGMTACSETLSVITRCRFCVQATDN------TGKPAS 54
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
TP + PT +V+ ILH + W GH ++ D A++ E F IG+P+P+PKG ID
Sbjct: 55 TTPARDKNKPTLDRYYKSVYFILHDKFWIGHGLVNSDWAKLEEEFNHIGKPSPKPKGIID 114
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
++ ++ K+A LA FGLG+ + ++ N + +K C
Sbjct: 115 TVPFISS-------GTKLAQLAVLFGLGEPSLGYYNNCEENYDAIKQC 155
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
+L FG + V K L + V+ + ++ R TP + + PT ++ +
Sbjct: 212 GLLHFGGMEVTSKTLAVITETGFCVQ------ATQINGRPARNTPAWLKNEPTLSESYNR 265
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKM 147
V+ +LH + W GH++ + D + + IG+ P PK ID++ ++ K+
Sbjct: 266 VYYMLHNKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEIIDTVPFISS-------GSKL 318
Query: 148 ASLATYFGLGQQTHRSLD--DVRMNLEVLKYC 177
LA GLG+ R LD + ++N +K C
Sbjct: 319 GKLAVLLGLGKPAAR-LDCRNCQVNYNAIKKC 349
>gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
Length = 502
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 61/111 (54%), Gaps = 12/111 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
+AF D+ETT P QR +I E G + V + E +STLVRPA PE I L+
Sbjct: 12 LAFVDIETT--GGPAQRESITEIGIVQVDEDGVRE---WSTLVRPASRIPETIQRLT--- 63
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GI D V +P F DIAD VFD L GR++ HN RFD +R AF G
Sbjct: 64 -GIDDDMVADAPRFEDIADEVFDRLDGRLFVAHNA-RFDHGHLRAAFRRAG 112
>gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit, partial [Actinomyces viscosus
C505]
gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
Length = 465
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 112/232 (48%), Gaps = 27/232 (11%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPE 58
MG +R+ D+ETT PG R ++ E GA+ V + + L +STLV P A P
Sbjct: 13 MGTPLERATFVVVDLETTGGA-PGAR-SVTEIGAVKV--RGGQVLAEFSTLVNPGVAIPA 68
Query: 59 LISSLSVRCNGITPDAVVSSP-------TFADIADTVFDILHGRIWAGHNILRFDCARIR 111
I+ L+ GIT V +P F D AD + D + I HN RFD +R
Sbjct: 69 QITMLT----GITNAMVAGAPGVRTCVEAFLDWADLLADDV---ILVAHNA-RFDVGHLR 120
Query: 112 EAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRM 169
A A +G PEP+ +D+LAL + + R + K+ +LA + G + THR+LDD R
Sbjct: 121 GAAAAVGLEWPEPR-VLDTLALARRAWTRSEVPNHKLGTLAAFVGSQTRPTHRALDDARA 179
Query: 170 NLEVLKYCATVL--FLESSLPDIFTVNSWVSPNATTRSR-SNAKSSPEGTSQ 218
++VL V+ + L D+ T + V +SR ++A S G Q
Sbjct: 180 TVDVLHAALEVMAPLGVTHLEDLSTASDPVPARRRAKSRLADALPSGPGVYQ 231
>gi|343522506|ref|ZP_08759472.1| exonuclease [Actinomyces sp. oral taxon 175 str. F0384]
gi|343401915|gb|EGV14421.1| exonuclease [Actinomyces sp. oral taxon 175 str. F0384]
Length = 545
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 113/232 (48%), Gaps = 27/232 (11%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPE 58
MG +R+ D+ETT PG R ++ E GA+ V + + L +STLV P A P
Sbjct: 6 MGTPLERATFVVVDLETTGGA-PGAR-SLTEIGAVKV--RGGQVLAEFSTLVNPGVAIPA 61
Query: 59 LISSLSVRCNGITPDAVVSSP-------TFADIADTVFDILHGRIWAGHNILRFDCARIR 111
I+ L+ GIT V +P TF D AD + D + + HN RFD +R
Sbjct: 62 QITMLT----GITNAMVAGAPGVRTCVETFLDWADLMADDV---VLVAHNA-RFDVGHLR 113
Query: 112 EAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRM 169
A A +G PEP+ +D+LAL + + R + K+ +LA + G + THR+LDD R
Sbjct: 114 GAAAALGLEWPEPR-VLDTLALARKVWTRSEVPNHKLGTLAAFVGSQIRPTHRALDDARA 172
Query: 170 NLEVLKYCATVL--FLESSLPDIFTVNSWVSPNATTRSR-SNAKSSPEGTSQ 218
++VL V+ + L D+ T + V +SR ++A S G Q
Sbjct: 173 TVDVLHGALEVMAPLGVTHLEDLATASDPVPAKRRAKSRLADALPSGPGVYQ 224
>gi|31432192|gb|AAP53854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 514
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 146 KMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPN 200
+MA+LA YF LG Q HRSL DVRMNL+VLK C+TVLFLE + P++ + +++PN
Sbjct: 260 QMANLADYFNLGPQIHRSLYDVRMNLDVLKCCSTVLFLEDNFPELLS-GGFLNPN 313
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Query: 319 AGFMEPDEVSLS---------------SISDGV-VPLFPGSQIQKIKLLHNDVILQLCCS 362
GF+ P+++SL S++ G+ P + + HND LQL C
Sbjct: 307 GGFLNPNDISLEFIQVSISFSSCLGKRSLTSGLRTNSLPYQFEWSLCIEHNDNPLQLRCI 366
Query: 363 RLKIRFGISTKFVDQAGRP-RLSFVVDISQSLCTVLDACEVIVRKLVEDSGSSSEWRHVV 421
L++R+ + + D GRP +LS VVDI ++L VL+ C+ I GS+SEWR V+
Sbjct: 367 GLRVRYEVYL-YQDSEGRPNKLSIVVDIPENLRQVLEFCDEIAEITFRKFGSNSEWRQVI 425
Query: 422 TRKGGFFNHPTARLQ 436
G N P+ RL
Sbjct: 426 KEYG---NRPSVRLN 437
>gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
J-10-fl]
gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
J-10-fl]
gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
Length = 278
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 22/165 (13%)
Query: 10 IAFFDVETT-VPTRPGQRF---AILEFGAILVCPKKLEELHNYSTLVRPA---DPELISS 62
+ FFDVETT + + G R A+L + + +E+ +TL+ P DP+
Sbjct: 15 LIFFDVETTGLEIQAGHRICEVAMLRW-------EHGQEVGRINTLINPERELDPQ---- 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
+ + NG+ P + ++P F DIA V + + HN L FD + + G P P
Sbjct: 64 -AAQINGLQPAELNNAPLFTDIAPQVVQLSQNAVRIAHN-LPFDESFLNMELCRAGYP-P 120
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDV 167
+D+L L +R G R G + +A+LAT FGL THR++DDV
Sbjct: 121 FTGPALDTLEL-ARRLGIRRGSLSLAALATTFGLPAPTHRAMDDV 164
>gi|400291850|ref|ZP_10793837.1| exonuclease [Actinomyces naeslundii str. Howell 279]
gi|399903058|gb|EJN85826.1| exonuclease [Actinomyces naeslundii str. Howell 279]
Length = 545
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 35/232 (15%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPE 58
MG +R+ D+ETT PG R ++ E GA+ V + + L ++STLV P A P
Sbjct: 6 MGTPLERATFVVVDLETTGGA-PGAR-SLTEIGAVKV--RGGQVLTDFSTLVNPGVAIPA 61
Query: 59 LISSLSVRCNGITPDAVVSSP----------TFADI-ADTVFDILHGRIWAGHNILRFDC 107
I+ L+ GIT V +P T+AD+ AD V + H RFD
Sbjct: 62 QITMLT----GITNAMVAGAPGVRTCVEAFLTWADLPADDVVLVAHN--------ARFDV 109
Query: 108 ARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFG-LGQQTHRSLD 165
+R A A +G PEP+ +D+LAL + + R + K+ +LA + G + THR+LD
Sbjct: 110 GHLRGAAAALGLEWPEPR-VLDTLALARKAWTRSEVPNHKLGTLAAFVGSRTRPTHRALD 168
Query: 166 DVRMNLEVLKYCATVL--FLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEG 215
D R ++VL V+ + L D+ T + V +SR A S P G
Sbjct: 169 DARATVDVLHAALEVMAPLGVTHLEDLTTASDPVPARRRAKSRL-ADSLPSG 219
>gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM
44728]
gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM
44728]
Length = 578
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 8/169 (4%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
SE+ F V+ +I E GA+ V + E L Y+TLV P E I +
Sbjct: 22 SEVTFMVVDLETTGVASDACSITEIGAVKV--RGGEVLGEYATLVNPG--EAIDARISAL 77
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT V +P ++ + + G +W HN FD +R A A+ P P P+
Sbjct: 78 TGITDAMVADAPAIEEVLPSFLEFARGAVWVAHNA-PFDVGFLRSACAQAELPWPRPQ-V 135
Query: 128 IDSLALLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+D++ L + R + ++++LA YFG + +HR+LDD R ++VL
Sbjct: 136 VDTVVLARRLVDRSEVPNKRLSTLARYFGARVKPSHRALDDARATVDVL 184
>gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein, partial [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
str. F0337]
Length = 299
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 27/232 (11%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPE 58
MG +R+ D+ETT PG R ++ E GA+ V + + L ++STLV P A P
Sbjct: 13 MGTPLERATFVVVDLETT-GGAPGAR-SLTEIGAVKV--RGGQVLADFSTLVNPGVAIPA 68
Query: 59 LISSLSVRCNGITPDAVVSSP-------TFADIADTVFDILHGRIWAGHNILRFDCARIR 111
I+ L+ GIT V +P F AD + D + + HN RFD +R
Sbjct: 69 QITMLT----GITNAMVAGAPGVSTCVEAFLSWADLLADDV---VLVAHNA-RFDVGHLR 120
Query: 112 EAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFG-LGQQTHRSLDDVRM 169
A A +G PEP+ +D+LAL + + R + K+ +LA + G + +HR+LDD R
Sbjct: 121 GAAAALGLEWPEPR-VLDTLALARKAWTRSEVPNHKLGTLAAFVGSRTRPSHRALDDARA 179
Query: 170 NLEVLKYCATVL--FLESSLPDIFTVNSWVSPNATTRSR-SNAKSSPEGTSQ 218
++VL V+ + L D+ T + V +SR ++A S G Q
Sbjct: 180 TVDVLHAALEVMAPLGVTHLEDLATASDPVPAKRRAKSRLADALPSGPGVYQ 231
>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
sedentarius DSM 20547]
Length = 584
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 97/209 (46%), Gaps = 17/209 (8%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGI 70
FD+ETT + I EFGA+ V + E + + TLVRPA P I L+ GI
Sbjct: 30 FDLETTGTSSADSE--ITEFGAVKV--RGGEVVGEFQTLVRPAAGIPPYIQVLT----GI 81
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V ++P+ + + + + HN RFD A +R A GRPAP +D+
Sbjct: 82 TTAMVSAAPSIEQVLPNFLEFVGDAVLVAHNA-RFDTAFVRRACERTGRPAPG-NPVLDT 139
Query: 131 LALLTQRFGR-RAGDMKMASLATYF-GLGQQTHRSLDDVRMNLEVLKYCATVL--FLESS 186
+ L Q R + K+++LA YF +HR+LDD R ++VL + S
Sbjct: 140 VHLARQLLPRPEVPNHKLSTLAAYFRAETTPSHRALDDARATVDVLHGLIERVGPLGVHS 199
Query: 187 LPDIFTVNSWVSPNATTRSRSNAKSSPEG 215
L ++ + V P A R R+ A PE
Sbjct: 200 LEELLAYSRHV-PEARRRKRTLAADLPEA 227
>gi|297733945|emb|CBI15192.3| unnamed protein product [Vitis vinifera]
Length = 171
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 35/46 (76%)
Query: 188 PDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENAS 233
PDI T +SW+SPN TR+R+N K+S EG S N+STPSS KFEN S
Sbjct: 107 PDILTTDSWISPNTITRTRANGKASSEGMSLNMSTPSSSLKFENHS 152
>gi|381395756|ref|ZP_09921451.1| DNA polymerase III subunit epsilon [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328635|dbj|GAB56584.1| DNA polymerase III subunit epsilon [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 714
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCN 68
A D+ETT R G I E G + + ++ + + +L+ P P +I+SL+
Sbjct: 552 AVIDIETT-GGRAGTH-KITEIGMVKMVNGEIVD--QWQSLINPQRRIPSMITSLT---- 603
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT D V +P FADIAD + I+ HN+ FD IRE FA I R PK
Sbjct: 604 GITNDMVADAPLFADIADELEAFTENCIFVAHNV-NFDYGFIREEFARINRHYKRPK--- 659
Query: 129 DSLALLTQRFGRRAG--DMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
L + Q G +A+L +F +G Q+ HR+L D E+LK
Sbjct: 660 --LCTVQQMRTHYKGLPSYSLANLTRHFDIGMQRHHRALSDAVAASELLK 707
>gi|325068629|ref|ZP_08127302.1| hypothetical protein AoriK_12441 [Actinomyces oris K20]
Length = 204
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 24/192 (12%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPE 58
MG +R D+ETT PG R ++ E GA+ V + + L +STLV P A P
Sbjct: 13 MGTPLERVTFVVVDLETT-GGAPGAR-SLTEIGAVKV--RGGQVLAEFSTLVNPGVAIPA 68
Query: 59 LISSLSVRCNGITPDAVVSSP-------TFADIADTVFDILHGRIWAGHNILRFDCARIR 111
I+ L+ GIT V +P F D AD + D + + HN RFD +R
Sbjct: 69 QITLLT----GITNAMVAGAPGVRTCVEAFLDWADLLADDV---VLVAHNA-RFDVGHLR 120
Query: 112 EAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRM 169
A A + PEP+ +D+LAL + + R + K+ +LA + G + THR+LDD R
Sbjct: 121 GAAAALDLEWPEPR-VLDTLALARKAWTRSEVPNHKLGTLAAFVGSQIRPTHRALDDARA 179
Query: 170 NLEVLKYCATVL 181
++VL V+
Sbjct: 180 TVDVLHAALEVM 191
>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
29083]
gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
29083]
Length = 327
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELIS 61
PT A DVETT R + + A+ + E ++ TLV P DP
Sbjct: 16 PTAYPQGYAVVDVETTGLARDDRIIS----AAVYRLDARGEVEDHWYTLVNPERDPG--- 68
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
V +G+T DA+ +P F DIAD L GR+ HN + FD I +A GR A
Sbjct: 69 --PVWIHGLTSDALEGAPLFQDIADEFSSRLDGRVLVAHNAV-FDWQMIAREYARAGRVA 125
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
P + +L++ G + K+ SLA +FG+ QQ H +LDD R+ E +
Sbjct: 126 PVSQRLC--TIVLSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFR 178
>gi|420154543|ref|ZP_14661438.1| exonuclease [Actinomyces massiliensis F0489]
gi|394753241|gb|EJF36815.1| exonuclease [Actinomyces massiliensis F0489]
Length = 561
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 9 EIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLS 64
E+ F D+ETT PG AI E GA+ V ++ +STLV P A P I+ L+
Sbjct: 14 EVTFIAVDLETTGGA-PGA-HAITEIGAVRVRGGVIDG--EFSTLVNPGAAIPAQITVLT 69
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILH----GRIWAGHNILRFDCARIREAFAEIGRP 120
GIT VV +P + + F+ H G I HN RFD +R A E+ P
Sbjct: 70 ----GITNAMVVDAPPVGEALTSFFEWAHWSGPGTILVAHNA-RFDIGHLRSAAQELTLP 124
Query: 121 APEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
EP+ +D+LAL + + R + ++ +LA++ G + THR+LDD R ++VL
Sbjct: 125 WQEPR-VVDTLALARRAWSRSEVPNHRLGTLASFVGSPTRPTHRALDDARATVDVL 179
>gi|375011077|ref|YP_004988065.1| exonuclease, DNA polymerase III, epsilon subunit family
[Owenweeksia hongkongensis DSM 17368]
gi|359347001|gb|AEV31420.1| exonuclease, DNA polymerase III, epsilon subunit family
[Owenweeksia hongkongensis DSM 17368]
Length = 441
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 23/175 (13%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
A DVETT G A+ E +L K+ + NYS L+ P P I +L+
Sbjct: 2 FAIVDVETTGGHASGH--AMTEIAIVLYDGTKV--VDNYSQLLNPKQHIPLNIQTLT--- 54
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GITPD V +PTF D+AD V + L I+ HN+ FD + ++ AFA +G PK
Sbjct: 55 -GITPDMVEDAPTFPDVADEVREFLGDHIFVAHNV-NFDYSFVKSAFASVGIDY-NPK-- 109
Query: 128 IDSLALLTQRFGRRA----GDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLKYC 177
+ + R+ RR + +L +F + + HR+ D ++++Y
Sbjct: 110 ----RMCSVRYARRVEKGLKSYSLGNLCKHFKVNNEAAHRAWGDATATAKIMEYL 160
>gi|336179029|ref|YP_004584404.1| DNA polymerase III subunit epsilon [Frankia symbiont of Datisca
glomerata]
gi|334860009|gb|AEH10483.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
glomerata]
Length = 629
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 98/218 (44%), Gaps = 25/218 (11%)
Query: 9 EIAFF--DVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLVRPADP--ELIS 61
E+ F D+ETT G R A I E GA+ + + E L +TLVRP P IS
Sbjct: 90 EVTFVVVDLETT-----GSRAADSEITEIGAVKI--RGGEVLAELATLVRPDAPIPPFIS 142
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT V ++P T + HG + HN FD +REA G P
Sbjct: 143 VLT----GITDAMVATAPRIDAALPTFLEFAHGSVLVAHNAP-FDLGFLREACVRCGHPV 197
Query: 122 PEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFGL-GQQTHRSLDDVRMNLEVLKYCAT 179
P+ + +D+L + Q GR D K+ASLA F HR+L D R + VL
Sbjct: 198 PDWE-HLDTLRIARQVLGRDETPDHKLASLARLFPADAGPCHRALADARATVAVLHGLFE 256
Query: 180 VL--FLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEG 215
L F ++L ++ + VSP A R R A P G
Sbjct: 257 RLGGFGVTTLEELHGFSRKVSP-ARRRKRHLADDLPTG 293
>gi|455647715|gb|EMF26647.1| DNA polymerase III subunit epsilon [Streptomyces gancidicus BKS
13-15]
Length = 641
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 9 EIAFFDVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSV 65
+ A DVET+ VP +R +L I V P E+ +STLV P DP V
Sbjct: 23 DFALVDVETSGLVP----RRDRVLSVAVITVGPDG-EQTGEFSTLVNPGCDPG-----PV 72
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+G+TPD + +PTF +A + +L R+ HN +FD + FA P +
Sbjct: 73 EVHGLTPDVLAGAPTFEQVAGRIGAMLQDRVLVAHNA-QFDYDFLAHEFARARMWLPVSQ 131
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
+ +LA L ++ DMK+ +LA ++G+ QQ H +LDD R+ VL+
Sbjct: 132 -RLCTLA-LNRQVDPPTDDMKLGTLAAHYGVPQQRAHDALDDTRVLAGVLR 180
>gi|340360259|ref|ZP_08682729.1| hypothetical protein HMPREF9062_1854 [Actinomyces sp. oral taxon
448 str. F0400]
gi|339883460|gb|EGQ73303.1| hypothetical protein HMPREF9062_1854 [Actinomyces sp. oral taxon
448 str. F0400]
Length = 543
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 22/184 (11%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVR 66
E+AF V+ AI E GA+ V +EE +STLV P A P I+ L+
Sbjct: 7 EVAFVVVDLETTGGAAGAHAITEIGAVRVRGGTVEE--EFSTLVDPGRAIPAQITVLT-- 62
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWA-------GHNILRFDCARIREAFAEIGR 119
GIT V +P+ + + + L W+ HN RFD +R A E+
Sbjct: 63 --GITNAMVAGAPS---VGEALVSFLEWARWSEADTVLVAHNA-RFDVGHLRRASRELAL 116
Query: 120 PAPEPKGTIDSLALLTQRFGRR-AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLKYC 177
P EP +D+LAL + +GR + ++ +LA++ G + THR+LDD R ++VL
Sbjct: 117 PWREPT-VLDTLALARRTWGRSDVPNHRLGTLASFVGSPTRPTHRALDDARATVDVLHAA 175
Query: 178 ATVL 181
VL
Sbjct: 176 LQVL 179
>gi|410865804|ref|YP_006980415.1| GIY-YIG catalytic domain-containing protein [Propionibacterium
acidipropionici ATCC 4875]
gi|410822445|gb|AFV89060.1| GIY-YIG catalytic domain-containing protein [Propionibacterium
acidipropionici ATCC 4875]
Length = 604
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 11/190 (5%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
I E GA+ V + E L +TLVRP + S+ + GIT + V +P+ + +
Sbjct: 41 ITEIGAVKV--RGGEVLGELATLVRPGS-HIRGSVQM-LTGITDEMVADAPSIGSVLPSW 96
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKM 147
+ G + HN RFD +R A RP P +D+LAL GR D K+
Sbjct: 97 LEFSRGCVLVAHNA-RFDIGFLRRACDAHDRPWPG-NTVLDTLALARSCLGRDEVHDHKL 154
Query: 148 ASLATYF-GLGQQTHRSLDDVRMNLEVLKYCATVL--FLESSLPDIFTVNSWVSPNATTR 204
+LA YF +HR+LDD R ++V+ + ++L D+ V V+P R
Sbjct: 155 GTLARYFSATTSPSHRALDDARATVDVMHGIIERVSGLGVTTLEDLLEVTHKVAPGRRAR 214
Query: 205 SRSNAKSSPE 214
R+ A S PE
Sbjct: 215 -RTWADSLPE 223
>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
43183]
gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
43183]
Length = 328
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)
Query: 2 GPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELI 60
GP + DVET+ RP R +L + + P + +STL+ P DP
Sbjct: 8 GPLPYPHDWTVVDVETSG-LRP-DRHRVLSLAVLTLRPDG-HLVEEFSTLLDPGCDPG-- 62
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
V +G+TP+ + +PTF +A+ V ++L GR+ HN FD A + F G
Sbjct: 63 ---PVHIHGLTPERLRGAPTFDRVAERVAELLSGRVMVAHNAA-FDYAFLAHEFGRAGLH 118
Query: 121 APEPKGTIDSLALLTQRFGRRAG----DMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
P + L T GRR G D+++++LA ++G+ Q + H +LDD R+ VL+
Sbjct: 119 LPVEQ------RLCTLALGRRIGLPTPDLRLSTLAAHYGVPQHRAHDALDDARVLAGVLR 172
>gi|358636742|dbj|BAL24039.1| DNA polymerase III, epsilon subunit [Azoarcus sp. KH32C]
Length = 470
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 12/111 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
+AF D+ETT T R +I E G + V + E +S+LVRP + P I L+
Sbjct: 11 LAFVDIETTGAT--SSRDSITEIGIVEVDQGGVRE---WSSLVRPDNRIPPSIEQLT--- 62
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GI+ + V +PTFA++ADT+ D L R++ HN RFD IR AF IG
Sbjct: 63 -GISNEMVADAPTFAELADTLLDRLQDRVFVAHNA-RFDHGFIRAAFRRIG 111
>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
Length = 623
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRC 67
+ A DVET+ RPG R +L AIL + + ++TL+ P DP V
Sbjct: 31 DWALVDVETS-GLRPG-RDRVLSL-AILTLDARGNQTGEFATLLNPGCDPG-----PVHI 82
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+G+TP + +PTF +IA V +L GR+ HN +FD + FA + P +
Sbjct: 83 HGLTPARLAGAPTFEEIAPQVGALLSGRVLVAHNA-QFDYDFLAHEFAHVRSWVPVSR-R 140
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
+ +LA L + G D+K+ +LA ++G+ Q+ H + DDVR+ +L+
Sbjct: 141 LCTLA-LNRLVGSATPDLKLGTLAAHYGVRQERAHDAQDDVRVLSGILR 188
>gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1]
gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit
family [Aromatoleum aromaticum EbN1]
Length = 478
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
+AF D+ETT T +I E I + + E +S+LVRP P+ I R
Sbjct: 18 LAFVDIETTGTT--ASHDSITEIAIIEIGEDGVRE---WSSLVRPDSRIPDYIE----RM 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GI+ V +PTFA++A+TVFD LH R++ HN RFD IR AF +G
Sbjct: 69 TGISNHMVADAPTFAELAETVFDRLHERVFVAHNA-RFDHGFIRAAFRRLG 118
>gi|383935383|ref|ZP_09988819.1| DNA polymerase III subunit epsilon [Rheinheimera nanhaiensis
E407-8]
gi|383703477|dbj|GAB58910.1| DNA polymerase III subunit epsilon [Rheinheimera nanhaiensis
E407-8]
Length = 736
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
DVETT R ++E GA+ + + E + +YSTL+ P P I S R GI+
Sbjct: 573 LDVETTGGKAGTDR--VIEIGAVKL--QGGEVIDSYSTLLNPQRP--IPSFISRLTGISN 626
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-GTIDSL 131
V +P+FA IA+ + D L G ++ HN +FD IR FA + +P P+ T+ ++
Sbjct: 627 SMVSDAPSFAQIANKLADFLQGAVFVAHNA-KFDYGFIRAEFARLEQPFDMPQLCTVVNM 685
Query: 132 ALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
+R+ + L F + HR+LDD E+LK
Sbjct: 686 ----RRYYPGLQSYSLGKLCQEFDIKLTNHHRALDDATATAELLK 726
>gi|383823222|ref|ZP_09978427.1| hypothetical protein MXEN_00380 [Mycobacterium xenopi RIVM700367]
gi|383339547|gb|EID17882.1| hypothetical protein MXEN_00380 [Mycobacterium xenopi RIVM700367]
Length = 626
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + L ++TLV DP+ I + VR GIT V +PT +
Sbjct: 46 AITEIGAVKV--RGGAVLGEFATLV---DPQRDIPAQIVRLTGITTAMVCDAPTIGAVLP 100
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDM 145
FD G + HN RFD A +R A + P P P + ++ L + R A +
Sbjct: 101 MFFDFARGAVLVAHNA-RFDLAFLRAAAERLHIPWPRPP-VLCTVGLARRVLSREEAPSV 158
Query: 146 KMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
++A+LA F + Q THR+L D R +EVL
Sbjct: 159 QLAALARLFAVASQPTHRALADARATVEVL 188
>gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
9485]
gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
9485]
Length = 280
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 10 IAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA---DPELISSLSV 65
+ FFDVETT + + G R I E + +++ N TL+ P DP+ +
Sbjct: 15 LVFFDVETTGLDLQNGHR--ICELAMLRREHRQITGQIN--TLINPERELDPQ-----AS 65
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+ NGI + + S+P FA++ V + + HN L FD + + A G P P
Sbjct: 66 QVNGIRAEDLQSAPRFAELTVQVVQLSQQAVRVAHN-LPFDESFLNMELARAGYP-PLTG 123
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDV--------RMNLEVLKYC 177
+D+L L +R G R G + + +LAT FGL THR++DDV R+ ++ Y
Sbjct: 124 PALDTLEL-ARRLGIRRGSLSLGALATSFGLPTPTHRAMDDVLTLHALFDRLVAKLADYG 182
Query: 178 ATVLF 182
T L+
Sbjct: 183 VTTLY 187
>gi|404451705|ref|ZP_11016662.1| DNA polymerase III subunit epsilon family exonuclease [Indibacter
alkaliphilus LW1]
gi|403762561|gb|EJZ23616.1| DNA polymerase III subunit epsilon family exonuclease [Indibacter
alkaliphilus LW1]
Length = 454
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 22/133 (16%)
Query: 14 DVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNG 69
D+ETT PT+ G I E A+L + +E+ + +L+ P P I+ L+ G
Sbjct: 7 DIETTGGNPTQGG----ITEIAALLY--ENGQEVDRFHSLINPERFIPGFITGLT----G 56
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
I + V SPTF++IA+ +FD L G ++ HN+ FD + IREAF + G PK
Sbjct: 57 IDQEMVQDSPTFSEIAEELFDFLKGNVFVAHNV-NFDYSFIREAFKKSGFQYDAPK---- 111
Query: 130 SLALLTQRFGRRA 142
L T R R+A
Sbjct: 112 ---LCTVRLSRKA 121
>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
SK46]
gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
SK46]
Length = 529
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGITPDAVVSSPTFADIAD 86
I+E GAI K + +S+ + P P+ I+SL+ GIT V ++P +
Sbjct: 40 IIEIGAIKTRGGK--TIGTFSSFIDPGMEIPDHITSLT----GITTADVETAPQLGTVIT 93
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDM 145
+ G +W HN +FD +R+A ++G P P +D+L L + R + G
Sbjct: 94 QFLEFARGSVWVAHNA-KFDIGFLRQACTDLGLDWPSPS-VVDTLTLARRVLDRSQVGSF 151
Query: 146 KMASLATYFGL-GQQTHRSLDDVRMNLEVLKYC 177
K++ LA Y G + HR+LDD ++VL Y
Sbjct: 152 KLSQLARYVGSPNRPAHRALDDAIATVDVLHYL 184
>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
43833]
gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
43833]
Length = 574
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 9 EIAF--FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP--ELISSLS 64
E+ F FD+ETT + P + AI E GA+ VC ++ ++TL+ P P IS L+
Sbjct: 17 EVTFVVFDLETTGGS-PAED-AITEIGAVKVCGGQVR--GEFATLIDPGRPIPPFISVLT 72
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
GIT VV++P + + + G HN FD +R A AE G P P
Sbjct: 73 ----GITDAMVVAAPKLPQVLPAFLEFIRGATLVAHNAP-FDLGFLRAACAEYGYPPPA- 126
Query: 125 KGTIDSLALLTQRFGR-RAGDMKMASLATYF-GLGQQTHRSLDDVRMNLEVL 174
+D+ L + R D K+A+LA YF + HR+L D R ++VL
Sbjct: 127 NPVVDTADLARRMLTRDETPDCKLATLARYFRSATEPCHRALADARATVDVL 178
>gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM
20162]
gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM
20162]
Length = 610
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 6 DRSEIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISS 62
D E+ F D+ETT + P AI E GA+ V + E L ++TLV DPE I+
Sbjct: 16 DLREVTFVVVDLETTGGS-PKGGDAITEIGAVKV--RGGEVLGEFATLV---DPERGIAP 69
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
GIT V +PT A + + G + HN RFD ++ A A G P P
Sbjct: 70 HITHLTGITTAMVTGAPTIASVLPAFLEFAQGAVLVAHNA-RFDIGFLKAAAAATGTPWP 128
Query: 123 EPKGTIDSLALLTQRFGR-RAGDMKMASLATYF-GLGQQTHRSLDDVRMNLEVL 174
+P+ T+ ++ L + R A +K++ +A F THR+LDD R ++VL
Sbjct: 129 KPQ-TLCTVQLARRVLTRDEAPSVKLSEMARLFRAETTPTHRALDDARATVDVL 181
>gi|365828287|ref|ZP_09370111.1| hypothetical protein HMPREF0975_01894 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365263782|gb|EHM93605.1| hypothetical protein HMPREF0975_01894 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 346
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 92/192 (47%), Gaps = 24/192 (12%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA--DPE 58
MG +R+ D+ETT PG R A+ E GA+ V ++ L ++STLV P P
Sbjct: 30 MGTPLERATFVVVDLETT-GRAPGAR-ALTEIGAVKVRGGRV--LADFSTLVNPGVTIPA 85
Query: 59 LISSLSVRCNGITPDAVVSSP-------TFADIADTVFDILHGRIWAGHNILRFDCARIR 111
I+ L+ GIT V +P F AD D + + HN RFD +R
Sbjct: 86 QITMLT----GITNAMVAGAPGVRACMEAFLAWADLPADDV---VLVAHNA-RFDVGHLR 137
Query: 112 EAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFG-LGQQTHRSLDDVRM 169
A A +G PEP +D+LAL + + R + K+ +LA + G + THR+LDD
Sbjct: 138 GAAAALGLEWPEPC-VLDTLALARKAWTRSEVPNHKLGTLAAFVGSRTRPTHRALDDAHA 196
Query: 170 NLEVLKYCATVL 181
++VL V+
Sbjct: 197 TVDVLHAALEVM 208
>gi|406663582|ref|ZP_11071623.1| hypothetical protein B879_03655 [Cecembia lonarensis LW9]
gi|405552189|gb|EKB47732.1| hypothetical protein B879_03655 [Cecembia lonarensis LW9]
Length = 457
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 27/154 (17%)
Query: 9 EIAFFDVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLS 64
E D+ETT P++ G I E A++ + + + TLV P P I+ L+
Sbjct: 2 EFVIIDIETTGGNPSQGG----ITEIAALVFDGNNI--IDRFHTLVNPERFIPNFITGLT 55
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
GI+ + V ++P F +IA+ ++++L GR + HN+ FD A IREAF IG+ P
Sbjct: 56 ----GISQEMVENAPKFEEIAEDLWNLLEGRTFVAHNV-NFDYAFIREAFKGIGKELNLP 110
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ 158
K L T R R+A L +Y GLG+
Sbjct: 111 K-------LCTVRLSRKA----FPGLGSY-GLGR 132
>gi|399525361|ref|ZP_10765805.1| exonuclease [Atopobium sp. ICM58]
gi|398373254|gb|EJN51214.1| exonuclease [Atopobium sp. ICM58]
Length = 531
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP--E 58
MG R D+ETT G I E GA+ V ++ + +S+L RP+ P
Sbjct: 1 MGTPASRGHWVVVDLETT---GLGAGAEITEIGAVSVRDGRITD--EFSSLARPSRPIPP 55
Query: 59 LISSLSVRCNGITPDAVVSSPTFADIADTVFDI--LHGR---IWAGHNILRFDCARIREA 113
I+SL+ GITP V + A + D + L G + HN FD +R A
Sbjct: 56 FITSLT----GITPAMVADADPIASVLDRFMEWSGLDGESAPVLVAHNA-SFDVGFLRRA 110
Query: 114 FAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNL 171
GRP P+P+ D+LAL R + K+A++A+YFG HR+L D R
Sbjct: 111 ARASGRPWPKPR-VADTLALARLALPRPLVRNHKLATIASYFGTATTPEHRALGDARATA 169
Query: 172 EVL 174
EVL
Sbjct: 170 EVL 172
>gi|379056933|ref|ZP_09847459.1| hypothetical protein SproM1_02552 [Serinicoccus profundi MCCC
1A05965]
Length = 595
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
Query: 8 SEIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
SE F D+ETT + G + I EFGA+ V + + L + TLVRPA P I +
Sbjct: 24 SETTFVVVDLETTGGSPAGSQ--ITEFGAVKV--RGGQVLGEFQTLVRPATP--IPAFIT 77
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE-P 124
GIT VV +P + + + G + HN FD + ++ A E G P P P
Sbjct: 78 VLTGITNAMVVQAPAISTVLPQFLEFARGSVLVAHNA-GFDVSFLKAAARETGHPWPGFP 136
Query: 125 KGTIDSLALLTQRFGR-RAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
+D++ L Q + A + K+ASLA FG HR+L D R ++VL
Sbjct: 137 --VLDTVRLARQLVRKDEAPNHKLASLARLFGATTTPDHRALHDARATVDVL 186
>gi|406837572|ref|ZP_11097166.1| ATP-dependent helicase DinG [Lactobacillus vini DSM 20605]
Length = 930
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR-CNG 69
A DVETT GQR +++F + + +++ ++ ++TLV +P+ SL ++ G
Sbjct: 8 AVVDVETTEVQPDGQR-RLIQFSCVFLKNRRV--INKFNTLV---NPQTSVSLEIQQLTG 61
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
ITP + +P F+D+A T++ +L ++ HNI FD + + +G P+ E +G ID
Sbjct: 62 ITPAQLNKAPLFSDLAATIYSLLQNTVFVAHNI-NFDYNFLNQELERVGYPSLELEG-ID 119
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGL 156
++ L Q K++ L++Y L
Sbjct: 120 TVQ-LAQVLLPTLPSFKLSYLSSYLNL 145
>gi|410028878|ref|ZP_11278714.1| DNA polymerase III subunit epsilon family exonuclease
[Marinilabilia sp. AK2]
Length = 457
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 37/172 (21%)
Query: 9 EIAFFDVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLS 64
E D+ETT P++ G I E A++ + + + TLV P P I+ L+
Sbjct: 2 EFVIIDIETTGGNPSQGG----ITEIAALVFDGNNI--IDRFHTLVNPERFIPNFITGLT 55
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
GI+ + V ++P F +IA+ ++++L GR + HN+ FD IREAF IG+ P
Sbjct: 56 ----GISQEMVENAPKFEEIAEDLWNLLEGRTFVAHNV-NFDYGFIREAFKSIGKELNLP 110
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ----------QTHRSLDD 166
K L T R R+A L +Y GLG+ HR+ D
Sbjct: 111 K-------LCTVRLSRKA----FPGLGSY-GLGRICEQLAIEISHRHRAFGD 150
>gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21]
gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21]
Length = 463
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 63/138 (45%), Gaps = 24/138 (17%)
Query: 9 EIAFFDVETTVPTRPGQ---RFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSL 63
E A D+ETT G AI +C H Y TLV P P IS+L
Sbjct: 2 EYAIVDIETTGGHAAGHGITEIAICIHDGAGIC-------HRYETLVNPQAHIPLHISAL 54
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+ GI+ + V +PTFA+IA TV+ +L GRI+ HN+ FD + I+ A G
Sbjct: 55 T----GISNEMVADAPTFAEIAATVYQLLEGRIFVAHNV-NFDYSFIKHHLAFCGYSWNA 109
Query: 124 PKGTIDSLALLTQRFGRR 141
PK L T R R+
Sbjct: 110 PK-------LCTVRLSRK 120
>gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium
mcbrellneri ATCC 49030]
Length = 560
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
I E GA V + E + + TLVRP +IS R GIT V ++P A +
Sbjct: 32 ITEIGA--VKSRGGEIIGEFQTLVRPTR-SVISPFVERLTGITNSMVATAPELASVIPMF 88
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR-AGDMKM 147
+ HG I HN FD ++EA A + P P + +D++ L R+ + K+
Sbjct: 89 LEFAHGSILVAHNA-GFDVGFLKEACARLDYPWPGYE-VVDTVRLARLCVTRQEVRNHKL 146
Query: 148 ASLATYFGL-GQQTHRSLDDVRMNLEVLK 175
+LAT+F + THR+LDD R +L+
Sbjct: 147 GTLATFFNVPTPPTHRALDDARATHHILQ 175
>gi|383787519|ref|YP_005472088.1| DNA polymerase III subunit alpha [Fervidobacterium pennivorans DSM
9078]
gi|383110366|gb|AFG35969.1| DNA polymerase III, alpha chain [Fervidobacterium pennivorans DSM
9078]
Length = 1395
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 9/147 (6%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
I+E GA+ + K+ + + TLV+P + S++ GIT + + +P ++ D +
Sbjct: 405 IMEIGAVKIVEGKISD--EFHTLVKPTT---LKEKSLQITGITEEMLKDAPEIGEVIDKL 459
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMA 148
+ L + HN FD + ++ FA GR P ID+L L + +
Sbjct: 460 WQFLKDAVLVAHNA-DFDISFLKHTFARFGREFNPP--YIDTLRLSQALLRNQMKAFSLD 516
Query: 149 SLATYFGLGQ-QTHRSLDDVRMNLEVL 174
L +F LG+ Q HR+LDD R+ V
Sbjct: 517 KLVEHFKLGKFQHHRALDDARVTARVF 543
>gi|152968358|ref|YP_001364142.1| DNA polymerase III subunit epsilon [Kineococcus radiotolerans
SRS30216]
gi|151362875|gb|ABS05878.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
SRS30216]
Length = 224
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 20/175 (11%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSV 65
R A DVETT RP +++ L+ + E ++S+LV P DP
Sbjct: 23 RHRYAVLDVETT-GLRPETGDRVVQIAVTLLDARGTVE-RSWSSLVDPHRDPG-----PT 75
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDC----ARIREAFAEIGRPA 121
+GIT + + +PTFA +A TV +L GR++ HN RFD A +R A + P
Sbjct: 76 HVHGITAERLAGAPTFAQLAPTVAGLLDGRVFVAHNA-RFDWKFVSAEMRAAGVHL--PV 132
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
+ T + L QR ++K+A+LA ++G+ Q + H + DD R+ +EVL+
Sbjct: 133 RQRLCTWE----LAQRLDLPVENLKLATLAEHWGVRQLRPHDAEDDTRVLVEVLR 183
>gi|407643470|ref|YP_006807229.1| hypothetical protein O3I_011470 [Nocardia brasiliensis ATCC 700358]
gi|407306354|gb|AFU00255.1| hypothetical protein O3I_011470 [Nocardia brasiliensis ATCC 700358]
Length = 728
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT T PG AI E GA+ V + E L ++TLV P + V+ GIT
Sbjct: 32 DLETTG-TSPGAD-AITEIGAVKV--RGGEVLGEFATLVNPG--RAVPPAIVQVTGITTA 85
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V ++P + + G + HN RFD A +R A A+ P P T+
Sbjct: 86 MVYAAPKIDAVLPGFLEFAAGAVLVAHNA-RFDMAFLRAAAAQC--ETPWPSATVLCTVK 142
Query: 134 LTQR-FGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L +R GR A ++++ LA G Q THR+LDD R ++VL
Sbjct: 143 LARRVLGRDEAPSVRLSVLAQLLGASTQPTHRALDDARATVDVL 186
>gi|419587096|ref|ZP_14123046.1| DNA polymerase III subunit epsilon [Campylobacter coli 67-8]
gi|380565342|gb|EIA88088.1| DNA polymerase III subunit epsilon [Campylobacter coli 67-8]
Length = 253
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELISSLSVRCNGITP 72
D+E+T + GQ ILE GA+ + K L+E+ +S+LV+ + PE I+ L+ GI
Sbjct: 76 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLVQVKEIPENITELT----GINL 126
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V +P+ + + L I+ HN+ RFD I +A E G G + +
Sbjct: 127 DMVKDAPSLTKVLNDFRLFLKDSIFVAHNV-RFDYGFISKALNECGF------GILLNRR 179
Query: 133 LLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
+ T F + + K+ L G+ HR+L+D E+ K+C
Sbjct: 180 ICTIEFAQCCIESPKYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 227
>gi|392554225|ref|ZP_10301362.1| hypothetical protein PundN2_02185 [Pseudoalteromonas undina NCIMB
2128]
Length = 718
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT + G R I E G + + + + ++TL+ P P I + GI
Sbjct: 558 DIETTGGLKGGNR--ITEIGIVKIQQGNI--IDTWTTLINPERP--IPRFITKLTGINDA 611
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V +P F+DI T+ D L G I+ HN+ FD I++ E+G PK L
Sbjct: 612 MVSDAPIFSDIVSTLLDKLSGSIFVAHNV-NFDYGFIKKELEELGINFKMPK-------L 663
Query: 134 LTQRFGRRA----GDMKMASLATYFGLG-QQTHRSLDD 166
T R+A + +L+T+F L HR+LDD
Sbjct: 664 CTVVESRKAFKGLKSYSLGNLSTHFNLDLTNHHRALDD 701
>gi|418050452|ref|ZP_12688538.1| DNA polymerase III, epsilon subunit [Mycobacterium rhodesiae JS60]
gi|353188076|gb|EHB53597.1| DNA polymerase III, epsilon subunit [Mycobacterium rhodesiae JS60]
Length = 614
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 24 GQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFA 82
G R AI E GA+ V + E L ++TLV DP+ I VR GIT V +PT A
Sbjct: 39 GSRDAITEIGAVKV--RGGEVLGEFATLV---DPQRSIPPQIVRLTGITTAMVHDAPTIA 93
Query: 83 DIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR- 141
+ + G + HN FD +R A + G P P L T + RR
Sbjct: 94 AVLPMFLEFARGAVLVAHNA-GFDIGFLRSAAEQCGISWPRPP------VLCTVKLARRV 146
Query: 142 -----AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA G Q THR+LDD R ++VL
Sbjct: 147 LTREEAPSVRLATLAALVGSATQPTHRALDDARATVDVL 185
>gi|419567455|ref|ZP_14104614.1| DNA polymerase III subunit epsilon [Campylobacter coli 1417]
gi|380548443|gb|EIA72348.1| DNA polymerase III subunit epsilon [Campylobacter coli 1417]
Length = 253
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELISSLSVRCNGITP 72
D+E+T + GQ ILE GA+ + K L+E+ +S+LV+ + PE I+ L+ GI
Sbjct: 76 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLVQVKEIPENITELT----GINL 126
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V +P+ + + L I+ HN+ RFD I +A E G G + +
Sbjct: 127 DMVKDAPSLTKVLNDFRLFLKDSIFVAHNV-RFDYGFISKALNECGF------GILLNRR 179
Query: 133 LLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
+ T F + + K+ L G+ HR+L+D E+ K+C
Sbjct: 180 ICTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 227
>gi|305433007|ref|ZP_07402163.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
gi|419536383|ref|ZP_14075864.1| DNA polymerase III subunit epsilon [Campylobacter coli 111-3]
gi|419538353|ref|ZP_14077712.1| DNA polymerase III subunit epsilon [Campylobacter coli 90-3]
gi|419540553|ref|ZP_14079787.1| DNA polymerase III subunit epsilon [Campylobacter coli Z163]
gi|419541678|ref|ZP_14080817.1| DNA polymerase III subunit epsilon [Campylobacter coli 2548]
gi|419544955|ref|ZP_14083892.1| DNA polymerase III subunit epsilon [Campylobacter coli 2553]
gi|419548309|ref|ZP_14086938.1| DNA polymerase III subunit epsilon [Campylobacter coli 2685]
gi|419552892|ref|ZP_14091175.1| DNA polymerase III subunit epsilon [Campylobacter coli 2692]
gi|419554247|ref|ZP_14092392.1| DNA polymerase III subunit epsilon [Campylobacter coli 2698]
gi|419557051|ref|ZP_14095013.1| DNA polymerase III subunit epsilon [Campylobacter coli 84-2]
gi|419558329|ref|ZP_14096199.1| DNA polymerase III subunit epsilon [Campylobacter coli 80352]
gi|419560954|ref|ZP_14098585.1| DNA polymerase III subunit epsilon [Campylobacter coli 86119]
gi|419562194|ref|ZP_14099714.1| DNA polymerase III subunit epsilon [Campylobacter coli 1091]
gi|419564027|ref|ZP_14101412.1| DNA polymerase III subunit epsilon [Campylobacter coli 1098]
gi|419567043|ref|ZP_14104281.1| DNA polymerase III subunit epsilon [Campylobacter coli 1148]
gi|419570376|ref|ZP_14107423.1| DNA polymerase III subunit epsilon [Campylobacter coli 7--1]
gi|419572617|ref|ZP_14109519.1| DNA polymerase III subunit epsilon [Campylobacter coli 132-6]
gi|419574475|ref|ZP_14111216.1| DNA polymerase III subunit epsilon [Campylobacter coli 1891]
gi|419574775|ref|ZP_14111475.1| DNA polymerase III subunit epsilon [Campylobacter coli 1909]
gi|419577744|ref|ZP_14114288.1| DNA polymerase III subunit epsilon [Campylobacter coli 59-2]
gi|419578661|ref|ZP_14115089.1| DNA polymerase III subunit epsilon [Campylobacter coli 1948]
gi|419581929|ref|ZP_14118207.1| DNA polymerase III subunit epsilon [Campylobacter coli 1957]
gi|419583772|ref|ZP_14119937.1| DNA polymerase III subunit epsilon [Campylobacter coli 1961]
gi|419585630|ref|ZP_14121679.1| DNA polymerase III subunit epsilon [Campylobacter coli 202/04]
gi|419588483|ref|ZP_14124305.1| DNA polymerase III subunit epsilon [Campylobacter coli 317/04]
gi|419590635|ref|ZP_14126000.1| DNA polymerase III subunit epsilon [Campylobacter coli 37/05]
gi|419593284|ref|ZP_14128510.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9854]
gi|419594811|ref|ZP_14129930.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23336]
gi|419597524|ref|ZP_14132498.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23341]
gi|419599265|ref|ZP_14134129.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23342]
gi|419601370|ref|ZP_14136085.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23344]
gi|419602286|ref|ZP_14136865.1| DNA polymerase III subunit epsilon [Campylobacter coli 151-9]
gi|419604864|ref|ZP_14139320.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9853]
gi|419606646|ref|ZP_14141006.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9860]
gi|419608957|ref|ZP_14143133.1| DNA polymerase III subunit epsilon [Campylobacter coli H6]
gi|419610419|ref|ZP_14144482.1| DNA polymerase III subunit epsilon [Campylobacter coli H8]
gi|419613056|ref|ZP_14146914.1| DNA polymerase III subunit epsilon [Campylobacter coli H9]
gi|419614268|ref|ZP_14148054.1| DNA polymerase III subunit epsilon [Campylobacter coli H56]
gi|419616458|ref|ZP_14150105.1| DNA polymerase III subunit epsilon [Campylobacter coli Z156]
gi|304443708|gb|EFM36365.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
gi|380516319|gb|EIA42452.1| DNA polymerase III subunit epsilon [Campylobacter coli Z163]
gi|380518151|gb|EIA44250.1| DNA polymerase III subunit epsilon [Campylobacter coli 111-3]
gi|380518301|gb|EIA44399.1| DNA polymerase III subunit epsilon [Campylobacter coli 90-3]
gi|380524503|gb|EIA50113.1| DNA polymerase III subunit epsilon [Campylobacter coli 2553]
gi|380524540|gb|EIA50148.1| DNA polymerase III subunit epsilon [Campylobacter coli 2548]
gi|380527603|gb|EIA52964.1| DNA polymerase III subunit epsilon [Campylobacter coli 2685]
gi|380530204|gb|EIA55295.1| DNA polymerase III subunit epsilon [Campylobacter coli 2692]
gi|380533158|gb|EIA58114.1| DNA polymerase III subunit epsilon [Campylobacter coli 2698]
gi|380533992|gb|EIA58842.1| DNA polymerase III subunit epsilon [Campylobacter coli 84-2]
gi|380536470|gb|EIA61098.1| DNA polymerase III subunit epsilon [Campylobacter coli 86119]
gi|380539559|gb|EIA63920.1| DNA polymerase III subunit epsilon [Campylobacter coli 80352]
gi|380541595|gb|EIA65853.1| DNA polymerase III subunit epsilon [Campylobacter coli 1091]
gi|380543194|gb|EIA67413.1| DNA polymerase III subunit epsilon [Campylobacter coli 1098]
gi|380544707|gb|EIA68719.1| DNA polymerase III subunit epsilon [Campylobacter coli 1148]
gi|380547335|gb|EIA71257.1| DNA polymerase III subunit epsilon [Campylobacter coli 7--1]
gi|380549545|gb|EIA73337.1| DNA polymerase III subunit epsilon [Campylobacter coli 1891]
gi|380550432|gb|EIA74094.1| DNA polymerase III subunit epsilon [Campylobacter coli 132-6]
gi|380554440|gb|EIA77902.1| DNA polymerase III subunit epsilon [Campylobacter coli 1909]
gi|380556397|gb|EIA79648.1| DNA polymerase III subunit epsilon [Campylobacter coli 59-2]
gi|380557590|gb|EIA80797.1| DNA polymerase III subunit epsilon [Campylobacter coli 1957]
gi|380559250|gb|EIA82412.1| DNA polymerase III subunit epsilon [Campylobacter coli 1948]
gi|380561834|gb|EIA84742.1| DNA polymerase III subunit epsilon [Campylobacter coli 202/04]
gi|380561978|gb|EIA84875.1| DNA polymerase III subunit epsilon [Campylobacter coli 1961]
gi|380570186|gb|EIA92616.1| DNA polymerase III subunit epsilon [Campylobacter coli 317/04]
gi|380570442|gb|EIA92866.1| DNA polymerase III subunit epsilon [Campylobacter coli 37/05]
gi|380571172|gb|EIA93579.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9854]
gi|380573389|gb|EIA95536.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23341]
gi|380574974|gb|EIA97062.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23336]
gi|380575589|gb|EIA97663.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23342]
gi|380579172|gb|EIB00977.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9853]
gi|380581276|gb|EIB03003.1| DNA polymerase III subunit epsilon [Campylobacter coli 151-9]
gi|380581691|gb|EIB03407.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23344]
gi|380584699|gb|EIB06104.1| DNA polymerase III subunit epsilon [Campylobacter coli H6]
gi|380586804|gb|EIB08077.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9860]
gi|380588704|gb|EIB09809.1| DNA polymerase III subunit epsilon [Campylobacter coli H9]
gi|380590003|gb|EIB11036.1| DNA polymerase III subunit epsilon [Campylobacter coli H8]
gi|380592879|gb|EIB13731.1| DNA polymerase III subunit epsilon [Campylobacter coli H56]
gi|380595496|gb|EIB16226.1| DNA polymerase III subunit epsilon [Campylobacter coli Z156]
Length = 253
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELISSLSVRCNGITP 72
D+E+T + GQ ILE GA+ + K L+E+ +S+LV+ + PE I+ L+ GI
Sbjct: 76 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLVQVKEIPENITELT----GINL 126
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V +P+ + + L I+ HN+ RFD I +A E G G + +
Sbjct: 127 DMVKDAPSLTKVLNDFRLFLKDSIFVAHNV-RFDYGFISKALNECGF------GILLNRR 179
Query: 133 LLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
+ T F + + K+ L G+ HR+L+D E+ K+C
Sbjct: 180 ICTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 227
>gi|57168588|ref|ZP_00367721.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
RM2228]
gi|57020093|gb|EAL56770.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
RM2228]
Length = 251
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELISSLSVRCNGITP 72
D+E+T + GQ ILE GA+ + K L+E+ +S+LV+ + PE I+ L+ GI
Sbjct: 74 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLVQVKEIPENITELT----GINL 124
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V +P+ + + L I+ HN+ RFD I +A E G G + +
Sbjct: 125 DMVKDAPSLTKVLNDFRLFLKDSIFVAHNV-RFDYGFISKALNECGF------GILLNRR 177
Query: 133 LLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
+ T F + + K+ L G+ HR+L+D E+ K+C
Sbjct: 178 ICTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 225
>gi|408826173|ref|ZP_11211063.1| DNA polymerase III subunit epsilon [Streptomyces somaliensis DSM
40738]
Length = 300
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 47 NYSTLVRPA-DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRF 105
++ TLV P DP VR +G+T D + +P FA++A + L GR+ HN F
Sbjct: 29 HWYTLVNPERDPG-----PVRIHGLTGDMLADAPLFAEVAAEFSERLDGRVLVAHNAY-F 82
Query: 106 DCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSL 164
D I +A R AP + + ++A L + +MK+ SLA +FG+ QQ H +L
Sbjct: 83 DWTMIAREYARAARTAPV-RRRLCTMA-LAKELALPLPNMKLESLAAHFGVRQQRAHHAL 140
Query: 165 DDVRMNLEVLK 175
DD R+ E +
Sbjct: 141 DDARVLAEAFR 151
>gi|410863476|ref|YP_006978710.1| DNA polymerase III subunit epsilon [Alteromonas macleodii AltDE1]
gi|410820738|gb|AFV87355.1| DNA polymerase III subunit epsilon [Alteromonas macleodii AltDE1]
Length = 715
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT R I E G + + K E+ + TL+ P I S R I+ D
Sbjct: 547 DIETTGGNNSYNR--ITEIGMVKLVGGK--EVDRFQTLLNP--QRRIPSSITRLTDISDD 600
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V +P FA++AD + ++ HN+ FD I++ FA + +P PK +
Sbjct: 601 MVADAPLFAEVADHIASFTEDAVFVAHNV-NFDYGFIKQEFARLEQPFRRPK-------M 652
Query: 134 LTQRFGRRA----GDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
T R RR +A+L +F + +Q HR+L D + E+LK
Sbjct: 653 CTVREMRRTHPGLSSYSLANLTKHFHIDMEQHHRALSDAKAAAELLK 699
>gi|419546679|ref|ZP_14085429.1| DNA polymerase III subunit epsilon [Campylobacter coli 2680]
gi|380521977|gb|EIA47679.1| DNA polymerase III subunit epsilon [Campylobacter coli 2680]
Length = 253
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELISSLSVRCNGITP 72
D+E+T + GQ ILE GA+ + K L+E+ +S+LV+ + PE I+ L+ GI
Sbjct: 76 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLVQVKEIPENITELT----GIDL 126
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V +P+ + + L I+ HN+ RFD I +A E G G + +
Sbjct: 127 DMVKDAPSLTKVLNDFRLFLKDSIFVAHNV-RFDYGFISKALNECGF------GILLNRR 179
Query: 133 LLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
+ T F + + K+ L G+ HR+L+D E+ K+C
Sbjct: 180 ICTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 227
>gi|332143320|ref|YP_004429058.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Deep ecotype']
gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
'Deep ecotype']
Length = 715
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT R I E G + + K E+ + TL+ P I S R GI+ D
Sbjct: 547 DIETTGGNNSYNR--ITEIGMVKLVGGK--EVDRFQTLLNP--QRRIPSSITRLTGISDD 600
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V +P FA++AD + ++ HN+ FD I++ FA + + PK +
Sbjct: 601 MVADAPLFAEVADHIASFTEDAVFVAHNV-NFDYGFIKQEFARLEQSFRRPK-------M 652
Query: 134 LTQRFGRRA----GDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
T R RR +A+L +F + +Q HR+L D + E+LK
Sbjct: 653 CTVREMRRTHPGLSSYSLANLTKHFHIDMEQHHRALSDAKAAAELLK 699
>gi|374723782|gb|EHR75862.1| DNA polymerase III subunit epsilon [uncultured marine group II
euryarchaeote]
Length = 298
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
D + FD+ETT + R L A++ + E+H Y LV P P I + +
Sbjct: 32 DGERVLAFDLETTGVSTQYDRIVQL---ALIGADETGGEVH-YERLVNPRRP--IPAGAS 85
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+GI V S F+ +AD V ++ G I GHN+ +FD A + + +G+ P+PK
Sbjct: 86 GVHGIYDHDVRSKGDFSTVADEVAALIEGAIIVGHNVRKFDMAMLESEYLRLGKRTPKPK 145
Query: 126 GTIDSLALLTQ-RFGRRAG 143
+D+ L+ + + GR G
Sbjct: 146 AIMDTYELVRRLKIGRPHG 164
>gi|386839372|ref|YP_006244430.1| DNA polymerase III subunit epsilon [Streptomyces hygroscopicus
subsp. jinggangensis 5008]
gi|374099673|gb|AEY88557.1| DNA polymerase III subunit epsilon [Streptomyces hygroscopicus
subsp. jinggangensis 5008]
gi|451792665|gb|AGF62714.1| DNA polymerase III subunit epsilon [Streptomyces hygroscopicus
subsp. jinggangensis TL01]
Length = 319
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + + A+ + E ++ TLV P DP V +G
Sbjct: 16 AVVDVETTGLARDDRIIS----AAVYRLDARGEVEDHWYTLVNPERDPG-----PVWIHG 66
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +P FADIA+ L GR+ HN + FD I +A + R AP + +
Sbjct: 67 LTSETLAGAPLFADIAEEFAARLEGRVLVAHNAV-FDWQMIAREYARVRREAPV-RQRLC 124
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
++A L++ + K+ SLA +FG+ QQ H +LDD R+ E +
Sbjct: 125 TIA-LSKELALPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFR 170
>gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec]
gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec]
Length = 603
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 15/193 (7%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADP--ELISSLSVRCNGITPDAVVSSPTFADIAD 86
I E GA+ V + + L S+LVRP+ P IS L+ GIT V ++P ++
Sbjct: 46 ITEIGAVRV--RGGQILGEMSSLVRPSAPIPAFISVLT----GITGAMVATAPGIGEVVP 99
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDM 145
T + G + HN FD +R A G PAP + +D++ + + R D
Sbjct: 100 TFLEFARGAVLVAHNAP-FDLGFLRAAATACGYPAPAWE-HLDTVRIARRVISRDETRDC 157
Query: 146 KMASLATYFGLGQQ-THRSLDDVRMNLEVLKYCATVL--FLESSLPDIFTVNSWVSPNAT 202
+++SLA FG Q HR+L D R ++VL L +++ D+ ++ VSP A
Sbjct: 158 RLSSLAALFGSATQPNHRALADARATVDVLHGLFERLGNLGVTTIEDLHEYSARVSP-AQ 216
Query: 203 TRSRSNAKSSPEG 215
R R A P G
Sbjct: 217 RRKRHLADDLPTG 229
>gi|302387397|ref|YP_003823219.1| DNA polymerase III subunit epsilon [Clostridium saccharolyticum
WM1]
gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
WM1]
Length = 222
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 11/160 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT P + +ILE AI V K E + +TLV P I + + R NGIT
Sbjct: 21 FDLETT-GISPAED-SILEISAIKV--KGHEPVAELNTLVNPGTH--IPAGATRINGITD 74
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI-GRPAPEPKGTIDSL 131
D V ++P ++ + G I GHNI FD + A E+ G+ P +D+L
Sbjct: 75 DMVKAAPGLKEVLPDFLSFIEGEILVGHNIQSFDLLFLYRAAQELFGKEV--PNDYVDTL 132
Query: 132 ALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMN 170
+ + + G ++ ++ YF + + HR+L D MN
Sbjct: 133 -FMAKTTLPQLGRHRLTDISAYFHINTEGAHRALSDCVMN 171
>gi|443628580|ref|ZP_21112927.1| putative DNA polymerase III subunit epsilon [Streptomyces
viridochromogenes Tue57]
gi|443337934|gb|ELS52229.1| putative DNA polymerase III subunit epsilon [Streptomyces
viridochromogenes Tue57]
Length = 335
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 47 NYSTLVRPA-DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRF 105
++ TLV P DP V +G+T +A+ +P F DIAD L GR+ HN + F
Sbjct: 58 HWYTLVNPERDPG-----PVWIHGLTSEALEGAPLFKDIADEFSARLDGRVLVAHNAV-F 111
Query: 106 DCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSL 164
D I +A R AP + + ++A L++ G + K+ SLA +FG+ QQ H +L
Sbjct: 112 DWQMIAREYARAEREAPV-RQRLCTIA-LSKELGLPLPNHKLESLAAHFGVVQQRAHHAL 169
Query: 165 DDVRMNLEVLK 175
DD R+ E +
Sbjct: 170 DDARVLAEAFR 180
>gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
str. F0386]
gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
str. F0386]
Length = 552
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 93/195 (47%), Gaps = 27/195 (13%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPE 58
MG R+ D+ETT PG + A+ E GA V + + L ++ TLV P A P
Sbjct: 13 MGTPLKRATFVVVDLETTGGA-PGAQ-ALTEIGA--VKARGGQVLTDFFTLVNPGVAIPA 68
Query: 59 LISSLSVRCNGITPDAVVSSPTFADIADTVFD---ILHGRI-WAGHNILRFDCARIREAF 114
I+ L+ GIT V +P + D +L G + HN RFD +R A
Sbjct: 69 QITMLT----GITNAMVAGAPGVRTCVEAFLDWADLLAGDVVLVAHNA-RFDVGHLRGAA 123
Query: 115 AEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLE 172
A +G PEP+ +D+LAL + + R + K+ +LA + G + THR+LDD
Sbjct: 124 AALGLEWPEPR-VLDTLALARKAWTRSEVPNHKLGTLAAFVGSQTRPTHRALDDA----- 177
Query: 173 VLKYCATVLFLESSL 187
CATV L ++L
Sbjct: 178 ----CATVDVLHAAL 188
>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
[Streptomyces scabiei 87.22]
Length = 613
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSLSVRC 67
+ A DVET+ RPG R +L +IL + + +STL+ P DP V
Sbjct: 18 DWALVDVETS-GLRPG-RDRVLSL-SILTLDAQGNQTGEFSTLLNPDCDPG-----PVHV 69
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+G+T D + +P F +IA V +L R+ HN +FD + FA++ AP +
Sbjct: 70 HGLTADRLAGAPAFEEIAPQVGALLSSRVLVAHNA-QFDYDFLAHEFAQVRSWAPVSR-R 127
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
+ +LA L + G D+K+ +LA ++G+ Q+ H + DDVR+ +L+
Sbjct: 128 LCTLA-LNRLVGPATPDLKLGTLAAHYGVRQEKAHDAQDDVRVLSGILR 175
>gi|419550253|ref|ZP_14088767.1| DNA polymerase III subunit epsilon [Campylobacter coli 2688]
gi|380531084|gb|EIA56121.1| DNA polymerase III subunit epsilon [Campylobacter coli 2688]
Length = 253
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELISSLSVRCNGITP 72
D+E+T + GQ ILE GA+ + K L+E+ +S+L++ + PE I+ L+ GI
Sbjct: 76 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLIQVKEIPENITELT----GIDL 126
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V +P+ + + L I+ HN+ RFD I +A E G G + +
Sbjct: 127 DMVKDAPSLTKVLNDFRLFLKDSIFVAHNV-RFDYGFISKALNECGF------GILLNRR 179
Query: 133 LLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
+ T F + + K+ L G+ HR+L+D E+ K+C
Sbjct: 180 ICTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 227
>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
Length = 334
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + + A+ + E ++ TLV P DP V +G
Sbjct: 21 AVVDVETTGLARDDR----IVSAAVYRLDARGEVEDHWYTLVNPERDPG-----PVWIHG 71
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T D + +P F DIAD L GR+ HN + FD + I +A R AP + +
Sbjct: 72 LTSDVLAGAPLFQDIADEFSQRLDGRVLVAHNAM-FDWSMIAREYARARRTAPT-RQRLC 129
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
++A L + + K+ SLA +FG+ Q Q H +LDD R+ E +
Sbjct: 130 TIA-LAKELRLPLPNHKLESLAAHFGVVQRQAHHALDDARVLAEAFR 175
>gi|392417017|ref|YP_006453622.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium chubuense NBB4]
gi|390616793|gb|AFM17943.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium chubuense NBB4]
Length = 623
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 23/182 (12%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRF-AILEFGAILVCPKKLEELHNYSTLVRPAD--PEL 59
PT + D+ETT G++ AI E GA+ V + E L ++TLV P P
Sbjct: 15 PTLRETTFVVVDLETTGGRPTGEKHDAITEIGAVKV--RGGEVLGEFATLVDPGRSIPPQ 72
Query: 60 ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
I +L+ GIT V +P + + HG + HN FD +R A
Sbjct: 73 IVALT----GITSAMVYDAPRIEAVLPAFLEFSHGAVLVAHNA-GFDIGFLRAAAERNHV 127
Query: 120 PAPEPKGTIDSLALLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLE 172
P P+P L T R RR A +++++LA FG THR+LDD R ++
Sbjct: 128 PWPKPP------VLCTVRLARRVLTRDEAPSVRLSALAQLFGASTTPTHRALDDARATVD 181
Query: 173 VL 174
VL
Sbjct: 182 VL 183
>gi|403716809|ref|ZP_10942247.1| DNA polymerase III subunit epsilon [Kineosphaera limosa NBRC
100340]
gi|403209605|dbj|GAB96930.1| DNA polymerase III subunit epsilon [Kineosphaera limosa NBRC
100340]
Length = 598
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADP--ELISSLSVRCNGITPDAVVSSPTFADIA 85
AI E GA+ V + E L + TLV P +P +IS L+ GIT V +P A +
Sbjct: 70 AITEIGAVKV--RGGEVLGQFQTLVNPGEPIPAVISVLT----GITDSMVAGAPRIATVL 123
Query: 86 DTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGD 144
+ + + + HN FD +R A +G P + +D++ L Q GR A +
Sbjct: 124 PSFLEFVGNSVLVAHNA-PFDVGFLRAAADRLGIDWPGYQ-VLDTVKLARQLVGRDEAPN 181
Query: 145 MKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
K+ASLA FG Q HR+L D R ++VL
Sbjct: 182 HKLASLARLFGATQTPDHRALHDARATVDVL 212
>gi|399528694|ref|YP_006560681.1| DNA polymerase III epsilon subunit [Croceibacter phage P2559S]
gi|392284409|gb|AFM54839.1| DNA polymerase III epsilon subunit [Croceibacter phage P2559S]
Length = 246
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I FFD+ETT R I++ + + + +E N L+ P P I + +G
Sbjct: 7 IVFFDLETTGVNTSTDR--IVQIAILKINTEGEQETAN--RLINPGRP--IPKAATDVHG 60
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAF--AEIGRPAPEPKGT 127
IT + V +PTF IA ++FDI G G+N FD + E F AEI PA
Sbjct: 61 ITDEMVKDAPTFKQIAKSLFDIFDGCDVGGYNSDNFDVPLLIEEFNRAEIEYPA--AGAA 118
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQ---THRSLDDVRMNLEVL 174
I+ +A+L + R+ K+ + G++ H +L+DVR EVL
Sbjct: 119 INFVAVL--KLERKVNSHKLTDTYKRY-TGKELDGAHDALNDVRATAEVL 165
>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
Length = 264
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT + + I+E A+ V K E++ +S LV P P I + + + NGIT
Sbjct: 61 FDLETTGIS--AVKDDIIEISALKV--KNHEQVETFSRLVNPRRP--IPAGATKVNGITD 114
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+ V S P I D + G I GHNI FD + A E+ R A ID+L
Sbjct: 115 EMVQSEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKAV-LNDFIDTL- 172
Query: 133 LLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLKYCATVL 181
+ + ++ LA YF + + HR+ +D MN ++ +L
Sbjct: 173 FMARALLPGLSRHRLTDLADYFKISSEGAHRAFNDCVMNQICYEHMGKLL 222
>gi|383641219|ref|ZP_09953625.1| DNA polymerase III subunit epsilon [Streptomyces chartreusis NRRL
12338]
Length = 331
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVETT R + I+ + + E H Y+T+ DP V +G+
Sbjct: 25 AVVDVETTGLARDDR---IISAAVYRLDARGEVEDHWYTTVNPERDPG-----PVWIHGL 76
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T +A+ +P FADIA+ L R+ HN + FD I +A R AP + + +
Sbjct: 77 TSEALEGAPLFADIAEEFTARLRDRVLVAHNAV-FDWQMIAREYARAKREAPV-RQRLCT 134
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
+A L++ G + K+ SLA +FG+ Q Q H +LDD R+ E +
Sbjct: 135 IA-LSKELGLPLPNHKLESLAAHFGVVQRQAHHALDDARVLAEAFR 179
>gi|383820435|ref|ZP_09975692.1| DNA polymerase III subunit epsilon [Mycobacterium phlei RIVM601174]
gi|383335437|gb|EID13868.1| DNA polymerase III subunit epsilon [Mycobacterium phlei RIVM601174]
Length = 312
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGIT 71
DVET+ RPGQ I+ A+ + E YS L DP +G+T
Sbjct: 1 MVDVETS-GFRPGQA-RIVSIAALALGDDGNVEQSLYSLLNPGVDPG-----PTHVHGLT 53
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
+ + PTFADI D + D+L GR HN+ FD + + +GR P T+
Sbjct: 54 AEMLEGQPTFADIVDHLIDLLAGRTLVAHNV-GFDYSFLAAEAEMVGREL--PTDTVMCT 110
Query: 132 ALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
L +R ++++ +LA ++G+ Q + H +LDD + ++LK
Sbjct: 111 VELARRLDLGTENLRLETLARHWGIDQMKPHDALDDALVLAQILK 155
>gi|374990915|ref|YP_004966410.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
BCW-1]
gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
BCW-1]
Length = 324
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 47 NYSTLVRPA-DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRF 105
++ TLV P DP V +G+T D + +P F++IAD + L GR+ HN + F
Sbjct: 55 HWYTLVNPQRDPG-----PVWIHGLTSDTLADAPLFSEIADELAQHLDGRVLVAHNAV-F 108
Query: 106 DCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSL 164
D + + +A G AP + + ++A L++ G + K+ SLA ++G+ Q+ H +L
Sbjct: 109 DWSMLAREYARAGSAAPV-RQRLCTIA-LSKELGLPLPNHKLESLAAHYGVVQERAHHAL 166
Query: 165 DDVRMNLEVLK 175
DD R+ E +
Sbjct: 167 DDARVLAETFR 177
>gi|357390290|ref|YP_004905130.1| putative exonuclease [Kitasatospora setae KM-6054]
gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054]
Length = 233
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
S A DVE T R R ++E A++ L ++TLV P P + V
Sbjct: 2 SGYAVVDVEAT--GRSPWRHRVVEV-AVVQLDAGLRTEREFATLVDPGGP--VGPTHV-- 54
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+GI V+ +P F IA + ++L GR+ GH++ D A + FA IG P+
Sbjct: 55 HGIAQADVLGAPRFRQIAPRLLELLAGRVLVGHHVT-CDRAFLEREFARIGVALPQVP-- 111
Query: 128 IDSLALLTQRFGRR----AGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLKYC 177
L T R RR AG +++ GLG H +L D R +E+L++C
Sbjct: 112 ----LLCTMRLARRQLPEAGGYGLSACVDAAGLGWFPAHTALGDARATVELLRHC 162
>gi|440697287|ref|ZP_20879715.1| BRCA1 C-terminal domain protein [Streptomyces turgidiscabies Car8]
gi|440280424|gb|ELP68161.1| BRCA1 C-terminal domain protein [Streptomyces turgidiscabies Car8]
Length = 335
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
PT A DVETT +R + I+ + + E H Y+T+ DP
Sbjct: 15 PTAYPQGYAVVDVETTGLSRDDR---IISAAVYRLDARGEVEDHWYTTVNPERDPG---- 67
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
V +G+T DA+ +P F DIA+ L R+ HN + FD + I +A R AP
Sbjct: 68 -PVWIHGLTSDALEGAPLFVDIAEEFASRLADRVLVAHNAV-FDWSMIAREYARAEREAP 125
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
+ + ++A L++ G + K+ +LA ++G+ QQ H +LDD R+ E +
Sbjct: 126 V-RQRLCTIA-LSKELGLPLPNHKLETLAAHYGVVQQRAHHALDDARVLAEAFR 177
>gi|422869808|ref|ZP_16916313.1| exonuclease, DNA polymerase III, epsilon subunit family
[Enterococcus faecalis TX1467]
gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
[Enterococcus faecalis TX1467]
Length = 240
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK]
gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
Length = 617
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 91/202 (45%), Gaps = 22/202 (10%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRF-AILEFGAILVCPKKLEELHNYSTLVRP--ADPEL 59
PT + D+ETT G R AI E GA+ V + E L ++TLV P A P
Sbjct: 15 PTLRETTFVVVDLETTGGRASGDRHDAITEIGAVKV--RGGEVLGEFATLVDPGRAIPPQ 72
Query: 60 ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
I +L+ GIT V +P + + + G + HN FD +R A
Sbjct: 73 IVALT----GITSAMVYDAPRIESVLPSFLEFCRGAVLVAHNA-GFDMGFLRAAAERNQV 127
Query: 120 PAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL--- 174
P P+P + ++AL + R A +K+++LA FG THR+LDD R ++VL
Sbjct: 128 PWPKPP-VLCTVALARRVLTRDEAPSVKLSALARLFGASTTPTHRALDDARATVDVLHAL 186
Query: 175 ------KYCATVLFLESSLPDI 190
+ T L + LPD+
Sbjct: 187 IERVGNQGVHTYAELRAYLPDV 208
>gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family
[Mycobacterium gilvum Spyr1]
gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium gilvum Spyr1]
Length = 617
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 91/202 (45%), Gaps = 22/202 (10%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRF-AILEFGAILVCPKKLEELHNYSTLVRP--ADPEL 59
PT + D+ETT G R AI E GA+ V + E L ++TLV P A P
Sbjct: 15 PTLRETTFVVVDLETTGGRASGDRHDAITEIGAVKV--RGGEVLGEFATLVDPGRAIPPQ 72
Query: 60 ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
I +L+ GIT V +P + + + G + HN FD +R A
Sbjct: 73 IVALT----GITSAMVYDAPRIESVLPSFLEFCRGAVLVAHNA-GFDMGFLRAAAERNQV 127
Query: 120 PAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL--- 174
P P+P + ++AL + R A +K+++LA FG THR+LDD R ++VL
Sbjct: 128 PWPKPP-VLCTVALARRVLTRDEAPSVKLSALARLFGASTTPTHRALDDARATVDVLHAL 186
Query: 175 ------KYCATVLFLESSLPDI 190
+ T L + LPD+
Sbjct: 187 IERVGNQGVHTYAELRAYLPDV 208
>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
Length = 175
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
15272]
gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
15272]
Length = 569
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 94/214 (43%), Gaps = 18/214 (8%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT + P + I E GA+LV + E L + TLV P + P I+ L+ GIT
Sbjct: 36 DLETTGGS-PQKGSRITEIGAVLV--RGGEVLGEFQTLVNPDESIPAFITVLT----GIT 88
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
VV +P A+ + + G + HN FD +R A AE+ P P+ +
Sbjct: 89 DQMVVQAPRIAEALPSFLEFARGSVLVAHNAP-FDTGFLRHAAAEL--QIPWPRFEVLDT 145
Query: 132 ALLTQR--FGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLKYCATVL--FLESS 186
ALL +R + K+ +LA + G HR+L D R ++VL + L S
Sbjct: 146 ALLARRVLLAGEVRNCKLGTLAAHVGATTTPNHRALSDARATVDVLHHLFERLGPLGVHS 205
Query: 187 LPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNL 220
L + S V+P A R R A P L
Sbjct: 206 LEEARAYTSTVTP-AQRRKRHLADKVPNAAGVYL 238
>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
2360]
gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
gi|385778569|ref|YP_005687734.1| DNA polymerase III subunit alpha [Clostridium thermocellum DSM
1313]
gi|419723603|ref|ZP_14250718.1| DNA polymerase III polC-type [Clostridium thermocellum AD2]
gi|419724572|ref|ZP_14251634.1| DNA polymerase III polC-type [Clostridium thermocellum YS]
gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
2360]
gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
1313]
gi|380772119|gb|EIC05977.1| DNA polymerase III polC-type [Clostridium thermocellum YS]
gi|380780285|gb|EIC09968.1| DNA polymerase III polC-type [Clostridium thermocellum AD2]
Length = 1442
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
E FD+ETT + I E GA+ + K+ + +ST V P P I V+
Sbjct: 428 EFVVFDIETT--GLSADKDKITEIGAVKIKEGKI--VDTFSTFVNPEIP--IPEFVVKLT 481
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT D V +PT + + + HN + FD IR I R P I
Sbjct: 482 GITDDMVSDAPTIDKVLPEFLEFVGTSPLVAHNAV-FDTGFIRHNARLINRNVDNP--VI 538
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVL 181
D+L L Q F K+ +A + G+ + HR+LDD + E+ C +L
Sbjct: 539 DTLELSRQMFPELK-KHKLDVVAKHLGVSLENHHRALDDAKACGEIFIKCLEIL 591
>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
gi|125713736|gb|ABN52228.1| DNA polymerase III, alpha subunit [Clostridium thermocellum ATCC
27405]
Length = 1442
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
E FD+ETT + I E GA+ + K+ + +ST V P P I V+
Sbjct: 428 EFVVFDIETT--GLSADKDKITEIGAVKIKEGKI--VDTFSTFVNPEIP--IPEFVVKLT 481
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT D V +PT + + + HN + FD IR I R P I
Sbjct: 482 GITDDMVSDAPTIDKVLPEFLEFVGTSPLVAHNAV-FDTGFIRHNARLINRNVDNP--VI 538
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVL 181
D+L L Q F K+ +A + G+ + HR+LDD + E+ C +L
Sbjct: 539 DTLELSRQMFPELK-KHKLDVVAKHLGVSLENHHRALDDAKACGEIFIKCLEIL 591
>gi|227495992|ref|ZP_03926303.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
15434]
gi|226834480|gb|EEH66863.1| DNA polymerase III epsilon subunit [Actinomyces urogenitalis DSM
15434]
Length = 547
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 31/245 (12%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPE 58
MG + D+ETT PG I E GA+ V ++E+ STLV P A P
Sbjct: 22 MGTPLQETTFVVVDLETT-GAGPGS-HTITEIGAVRVRGGQVED--ELSTLVNPGRAIPA 77
Query: 59 LISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNIL-----RFDCARIREA 113
I+ L+ GIT V +P + + R+W +L RFD +R A
Sbjct: 78 QITVLT----GITNAMVAGAPPVPEALERFLQW--ARLWEEETVLVAHNARFDVGHLRGA 131
Query: 114 FAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNL 171
+ EP+ +D+LAL + + R + ++A+LA++ G + THR+LDD R +
Sbjct: 132 ARALELDWHEPR-VLDTLALARRAWTRSEVPNHRLATLASFVGSPTRPTHRALDDARATV 190
Query: 172 EVLKYCATVL--FLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKF 229
+VL VL + L D+ T V +R AKS +Q+L T ++F
Sbjct: 191 DVLHAALEVLGPLGVTHLEDLATATDPVP------ARRRAKSR---LAQDLPTSPGVYQF 241
Query: 230 ENASN 234
+A+
Sbjct: 242 LSAAG 246
>gi|154148582|ref|YP_001406342.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
BAA-381]
gi|153804591|gb|ABS51598.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
BAA-381]
Length = 262
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELISSLS 64
D ++ F D+ET GQ I+E GAI V K++ L+ + T V ++ PE I L+
Sbjct: 71 DEADFCFVDIETNGGIDKGQ---IIEIGAIKVRAKEI--LNTFKTFVYASNIPENIVELT 125
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
GI + + ++P +++ + L ++ HN+ +FD I E+ +IG
Sbjct: 126 ----GIHTNDLKNAPHLSNVLENFRLFLGDSVFVAHNV-KFDYGFISESLQKIGFGGLLN 180
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
+ ID++ L + A ++SL G+ + HR+ D E+ K+C L
Sbjct: 181 R-RIDTIDLAKRTIA--AQKYGLSSLKELLGIENEHHRAFSDALSCYEIFKFCTQKL 234
>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
Length = 574
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 8 SEIAF--FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP--ELISSL 63
S+I F FD+ETT + AI E GA+ V + E L + TLV P P IS L
Sbjct: 17 SQITFVVFDLETTGVS--AGEHAITEIGAVKV--RGGEVLGEFGTLVDPGSPIPPFISVL 72
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+ GIT VV++P + + + G HN FD I+ A A G P P
Sbjct: 73 T----GITDTMVVAAPKIESVLPSFLEFAEGTTLVAHNA-GFDLGFIKAACAAHGYPPPA 127
Query: 124 PKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+D++ L + R A + K+++LA F + HR+L D + ++VL
Sbjct: 128 -HPVVDTVVLARKLLTRDEAPNCKLSTLARIFSKTEPRHRALADAQATVDVL 178
>gi|365825004|ref|ZP_09366964.1| hypothetical protein HMPREF0045_00600 [Actinomyces graevenitzii
C83]
gi|365259192|gb|EHM89187.1| hypothetical protein HMPREF0045_00600 [Actinomyces graevenitzii
C83]
Length = 582
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPE 58
MG ++ D+ETT +PG AI EFGA+ VC ++ L + +L P A P
Sbjct: 46 MGTPLEQVTFVVVDLETT-GAQPGPD-AITEFGAVRVCGGEI--LDEFGSLANPGTAVPA 101
Query: 59 LISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWA----------GHNILRFDCA 108
I+ L+ GIT V S+P ++ + D + WA HN RFD +
Sbjct: 102 YITMLT----GITTSMVASAPPLEEV---LGDFMS---WARLDEPDTVIVAHNA-RFDVS 150
Query: 109 RIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR-AGDMKMASLATYFGLGQQ-THRSLDD 166
+R A G P + +D+L L + + R + K+++LA + G THR+LDD
Sbjct: 151 HLRSAAGAFGFDWPSVR-VLDTLKLTRKAWSRNDVANHKLSTLARFVGAQTTPTHRALDD 209
Query: 167 VRMNLEVLKYCA 178
R ++VL Y A
Sbjct: 210 ARATVDVL-YAA 220
>gi|392397353|ref|YP_006433954.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Flexibacter litoralis DSM 6794]
gi|390528431|gb|AFM04161.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Flexibacter litoralis DSM 6794]
Length = 269
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
++ +AFFD+E T R I+E + + P +E+H + + P P I ++ +
Sbjct: 6 KNPLAFFDLEATGIDTIKDR--IVEISIVKLMPNGEKEVHTHK--INPTVP--IPEITTK 59
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
+GI+ + V +PTF +A T +IL G AG NI+RFD + E F G
Sbjct: 60 IHGISDEDVKDAPTFKQMAKTFANILKGCDLAGFNIMRFDVPMLVEEFLRAG 111
>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
Length = 236
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD ETT R ++E G I + ++ + PAD I ++ +GITP
Sbjct: 6 FDTETTGLESKLDR--VIEIGGIELF-NHFPTGRSFHVYINPAD-RAIHPDALAVHGITP 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+ + P FADI + + G W HN FD I F +GRP P+ ID+L+
Sbjct: 62 EFLKDKPVFADIVEDLVAFFDGAKWVAHNAT-FDMGFINAEFERLGRPLVGPEHVIDTLS 120
Query: 133 LLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
L ++ G + +L +G+ +HR+ ++ E+L
Sbjct: 121 LARRK--HPMGPNSLDALCRRYGI-DNSHRTKHGALLDSELL 159
>gi|334131114|ref|ZP_08504880.1| DNA polymerase III, epsilon subunit [Methyloversatilis universalis
FAM5]
gi|333443744|gb|EGK71705.1| DNA polymerase III, epsilon subunit [Methyloversatilis universalis
FAM5]
Length = 485
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+A D+ETT R + E G +L+ E +S+LV P P +S R G
Sbjct: 8 LAIVDLETTGGDPRADR--VTEVGVVLIDGGVRRE---WSSLVNPGLPIPLSI--QRFTG 60
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT D V +P FAD+A+ + +LHGR++ HN RFD +R FA +G
Sbjct: 61 ITDDMVAGAPRFADLAEELAALLHGRLFIAHNA-RFDHGFLRNEFARVG 108
>gi|339624795|ref|ZP_08660584.1| Rad3-related DNA helicase [Fructobacillus fructosus KCTC 3544]
Length = 805
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 16/179 (8%)
Query: 14 DVETTVPT-RPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D+ETT P+ G R I++ G V KK+ E ++ + V PA P I + I+P
Sbjct: 11 DLETTSPSVENGGR--IIQIGMTFVKNKKIVE--HFDSFVNPAQP--IDRKIQQLTHISP 64
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
V +P F ++A ++ +L G+++ HN+ FD + FA +G P + + ID++
Sbjct: 65 SDVQDAPFFEELAPSLQALLQGQVFVAHNV-NFDLPYLNAEFARVGLPELDLQA-IDTVQ 122
Query: 133 LLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLES-SLPD 189
L F G +++ L TY L Q HR+ D E Y L+ ++ SLP+
Sbjct: 123 LAQILFPTAPG-YRLSDLTTYLDLPLTQAHRANADA----EATAYLMLALWQKAQSLPE 176
>gi|386387233|ref|ZP_10072273.1| DNA polymerase III subunit epsilon [Streptomyces tsukubaensis
NRRL18488]
gi|385665303|gb|EIF89006.1| DNA polymerase III subunit epsilon [Streptomyces tsukubaensis
NRRL18488]
Length = 322
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 47 NYSTLVRPA-DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRF 105
+ TLV P DP V +G+T + + +P FA+IAD + L R+ HN L F
Sbjct: 32 QWYTLVNPERDPG-----PVWIHGLTREVLAGAPLFAEIADAFAERLADRVLVAHNAL-F 85
Query: 106 DCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSL 164
D + I +A GR AP + + ++A L + + K+ SLA +FG+ QQ H +L
Sbjct: 86 DWSMIAREYARAGRTAPVSR-RLCTIA-LAKELSLPLPNHKLESLAAHFGVVQQRAHHAL 143
Query: 165 DDVRMNLEVLK 175
DD R+ E +
Sbjct: 144 DDARVLAEAFR 154
>gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
Length = 547
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 14/172 (8%)
Query: 8 SEIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLE-ELHNYSTLVRPADPELISSLS 64
SE+ F D+ETT TRPG I E GA+ + +++ EL + ++ D L +S
Sbjct: 34 SEVTFVVVDLETTG-TRPGGD-EITEIGAVRIRGGEVQAELSTFVSI----DGVLPGHIS 87
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R GI P+ +V +P+ ++ T + G + HN RFD +R A A G P+P
Sbjct: 88 -RLTGIAPEDLVGAPSLGEVMATFLEFSRGAVLVAHNA-RFDLGFLRAAAAATGHRWPDP 145
Query: 125 KGTIDSLALLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
++ +LAL + R ++ LA + G + HR+L D R ++VL
Sbjct: 146 P-SVCTLALARRVLHRGETRGHRLGVLAAHLGATVEPNHRALQDARATVDVL 196
>gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides
DG-6]
gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
Length = 272
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 10 IAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP---ADPELISSLSV 65
+ FFD+ETT + R G R + E + V +E+ + +RP DPE +
Sbjct: 14 LVFFDLETTGLDLRAGHR--VCELALLRVRGAAVED--YLGSALRPDRLLDPE-----AA 64
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
NG + +P FA +A V + HG + HN L FD A + A IG+P P
Sbjct: 65 AVNGFQDAELRGAPRFASVAGRVQRMAHGAVLIAHN-LPFDMAFLNAELARIGQP-PLAS 122
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDV 167
T+D+L L + R +A+LA +FGL + THR+L DV
Sbjct: 123 VTLDTLVLARRLL--RRPSYSLAALAEHFGLPRPTHRALADV 162
>gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
Length = 247
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ILE G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--ILELGCVELVNRRLTGNNLHFYINPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT- 127
G+T + + P FADIAD + D + G HN FD + FA +G P P T
Sbjct: 58 GLTTEFLSDKPKFADIADQIRDFIQGADLIIHNA-PFDIGFLDAEFALLGLP---PVSTY 113
Query: 128 ----IDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATV 180
ID+LA Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 114 CGEIIDTLARAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMT 169
Query: 181 LFLESSLPDIF 191
ES + D+
Sbjct: 170 RGQESLVIDML 180
>gi|407689571|ref|YP_006804744.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292951|gb|AFT97263.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 711
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT R I E G + + K E+ + TL+ P I S R GI+ D
Sbjct: 547 DIETTGGNSSYNR--ITEIGMVKLVGGK--EVDRFQTLLNP--QRRIPSNITRLTGISDD 600
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V +P FA++A+ V + ++ HN+ FD I++ FA + + PK +
Sbjct: 601 MVADAPLFAEVAEHVANFTEDAVFVAHNV-NFDYGFIKQEFARLEQSFRRPK-------M 652
Query: 134 LTQRFGRRAG----DMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
T R RR +A+L +F + +Q HR+L D + E+LK
Sbjct: 653 CTVREMRRTYPGLPSYSLANLTKHFHIEMEQHHRALSDAKAAAELLK 699
>gi|375110632|ref|ZP_09756852.1| DNA polymerase III, epsilon subunit [Alishewanella jeotgali KCTC
22429]
gi|374569206|gb|EHR40369.1| DNA polymerase III, epsilon subunit [Alishewanella jeotgali KCTC
22429]
Length = 749
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
DVETT R ++E GA+ V + E L +STL+ P I S R GI+
Sbjct: 587 LDVETTGGKAGTDR--VIEIGAVKV--QAGEVLDTFSTLLNPG--RTIPSFISRLTGISN 640
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA 115
V +PTFADIAD + + L G ++ HN +FD IR FA
Sbjct: 641 AMVADAPTFADIADKLAEFLRGAVFVAHNA-KFDYGFIRSEFA 682
>gi|406598669|ref|YP_006749799.1| DNA polymerase III subunit epsilon [Alteromonas macleodii ATCC
27126]
gi|406375990|gb|AFS39245.1| DNA polymerase III subunit epsilon [Alteromonas macleodii ATCC
27126]
Length = 711
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT R I E G + + K E+ + TL+ P I S R GI+ D
Sbjct: 547 DIETTGGNSSYNR--ITEIGMVKLVGGK--EVDRFQTLLNP--QRRIPSNITRLTGISDD 600
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V +P FA++A+ V + ++ HN+ FD I++ FA + + PK +
Sbjct: 601 MVADAPLFAEVAEHVANFTEDAVFVAHNV-NFDYGFIKQEFARLEQSFRRPK-------M 652
Query: 134 LTQRFGRRAG----DMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
T R RR +A+L +F + +Q HR+L D + E+LK
Sbjct: 653 CTVREMRRTYPGLPSYSLANLTKHFHIEMEQHHRALSDAKAAAELLK 699
>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
Length = 389
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 7 RSEIAFFDVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSL 63
R A DVETT PTR +L +L E H +STL+ P DP
Sbjct: 74 RRPYAVVDVETTGLSPTRD----RVLSVAVVLTAADGTVE-HRWSTLLDPGCDPG----- 123
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
V +G+T + SPTFA +AD V +L GR+ HN FD + IG P
Sbjct: 124 PVHIHGLTRQRLAGSPTFAAVADEVAGLLAGRVLVAHNAA-FDWRMLAGEAMRIGTTIPV 182
Query: 124 PKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
+ + +L L R G +++ASLA Y+G+ Q + H + DD + +L
Sbjct: 183 -EWRLCTLT-LASRLGLELPSLRLASLAAYWGVVQRRAHDAQDDAEVLAALL 232
>gi|407685640|ref|YP_006800814.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'English Channel 673']
gi|407247251|gb|AFT76437.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'English Channel 673']
Length = 711
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT R I E G + + K E+ + TL+ P I S R GI+ D
Sbjct: 547 DIETTGGNSSYNR--ITEIGMVKLVGGK--EVDRFQTLLNP--QRRIPSNITRLTGISDD 600
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V +P FA++A+ V + ++ HN+ FD I++ FA + + PK +
Sbjct: 601 MVADAPLFAEVAEHVANFTEDAVFVAHNV-NFDYGFIKQEFARLEQSFRRPK-------M 652
Query: 134 LTQRFGRRAG----DMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
T R RR +A+L +F + +Q HR+L D + E+LK
Sbjct: 653 CTVREMRRTYPGLPSYSLANLTKHFHIEMEQHHRALSDAKAAAELLK 699
>gi|407701854|ref|YP_006826641.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Black Sea 11']
gi|407251001|gb|AFT80186.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Black Sea 11']
Length = 715
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT R I E G + + K E+ + TL+ P I S R GI+ D
Sbjct: 547 DIETTGGNSSYNR--ITEIGMVKLVGGK--EVDRFQTLLNP--QRRIPSNITRLTGISDD 600
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V +P FA++A+ V + ++ HN+ FD I++ FA + + PK +
Sbjct: 601 MVADAPLFAEVAEHVANFTEDAVFVAHNV-NFDYGFIKQEFARLEQTFRRPK-------M 652
Query: 134 LTQRFGRRAG----DMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
T R RR +A+L +F + +Q HR+L D + E+LK
Sbjct: 653 CTVREMRRTYPGLPSYSLANLTRHFHIDMEQHHRALSDAKAAAELLK 699
>gi|222084205|ref|YP_002542731.1| DNA polymerase III subunit epsilon [Agrobacterium radiobacter K84]
gi|398380841|ref|ZP_10538955.1| DNA polymerase III, epsilon subunit [Rhizobium sp. AP16]
gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
gi|397720272|gb|EJK80830.1| DNA polymerase III, epsilon subunit [Rhizobium sp. AP16]
Length = 236
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPK--KLEELHNYSTLVRPADPELISSLSVRCNG 69
FD ETT R I+E G I + + LH Y + P D + + ++ +G
Sbjct: 5 IFDTETTGLDNKADR--IIEIGGIELFNHFPTGKTLHLY---INPGDRK-VHPDALAVHG 58
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
IT +++ P FAD+AD + G W HN FD + F +GRP P ID
Sbjct: 59 ITDESLKDKPPFADVADEILAFFEGAKWIAHNAT-FDMGFVNAEFNRLGRPPILPDMVID 117
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+LA+ ++ G + +L +G+ +HR+ ++ E+L
Sbjct: 118 TLAMARRK--HPMGPNSLDALCRRYGI-DNSHRTRHGALLDSELL 159
>gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Corynebacterium matruchotii ATCC 14266]
gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Corynebacterium matruchotii ATCC 14266]
Length = 2479
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 22/183 (12%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVETT + + I+E AI+V E L+ +STL+ P IS+ ++ +GI
Sbjct: 2086 AVVDVETTGFSTADR---IVEL-AIVVLDDDGENLYEWSTLINPMRD--ISNGAI--HGI 2137
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-RPAPEPKGTID 129
T V +PTF +AD V +L G+I+ HN + FD ++ F +G + A G ID
Sbjct: 2138 TAKDVAVAPTFDQVADDVAALLEGKIFVAHNAI-FDVRMLKSEFDRVGLKMAGLADGHID 2196
Query: 130 SLALLTQRF--GRRAGDMKMASLATYFGL-GQQTHRSLDDVRMNLEVLKYCATVLFLESS 186
+L L R+ D +A + G+ +Q H +L D R +L FL
Sbjct: 2197 TLRLAQNSLPISSRSLDSCLA----FMGITNEQAHSALSDARATGRLLTR-----FLLDE 2247
Query: 187 LPD 189
LP+
Sbjct: 2248 LPN 2250
>gi|389865175|ref|YP_006367416.1| DNA-directed DNA polymerase [Modestobacter marinus]
gi|388487379|emb|CCH88937.1| DNA-directed DNA polymerase [Modestobacter marinus]
Length = 649
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 17/200 (8%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGITPDAVVSSPTFADIA 85
AI E GA+ V + + L + TLV P P IS L+ GIT V ++P +
Sbjct: 70 AITEIGAVKV--RGGQVLGEFQTLVDPGREIPPYISVLT----GITSMMVAAAPRIDSVL 123
Query: 86 DTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR--AG 143
+ G + HN FD +R A E G P P P ++D+ A+L +R R
Sbjct: 124 PAFLEFARGTVLVAHNAP-FDLGFLRAACEETGTPWP-PFASVDT-AVLARRLLTRDEVP 180
Query: 144 DMKMASLATYFGL-GQQTHRSLDDVRMNLEVLKYCATVL--FLESSLPDIFTVNSWVSPN 200
+ K+ +LA +F Q HR+LDD R ++VL L SSL ++ + V P
Sbjct: 181 NCKLGTLAPFFSAETQPCHRALDDARATVDVLHGLFERLGPLGVSSLEELTGLTRQVDPQ 240
Query: 201 ATTRSRSNAKSSPEGTSQNL 220
R R A+ P G L
Sbjct: 241 -RRRKRHLAEHVPSGPGVYL 259
>gi|359449436|ref|ZP_09238929.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20480]
gi|358044746|dbj|GAA75178.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20480]
Length = 745
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT + G R I E G + V K+ + ++TL+ P I S + GI+
Sbjct: 583 DIETTGSLKGGNR--ITEIGVVKVQHGKV--IDTWTTLINPQRH--IPSFITKLTGISDG 636
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V ++P FADIA + D L G I+ HN+ FD I++ G PK +
Sbjct: 637 MVYNAPVFADIAQPLLDKLAGSIFVAHNV-NFDYGFIKKECEVAGHFFKMPKMCT---VV 692
Query: 134 LTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
++R + + +L+ +F L + HR+L D E+L
Sbjct: 693 ESRRAFKGLKSYSLGNLSAHFNLNLTSHHRALADATATAELL 734
>gi|374607199|ref|ZP_09680000.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
gi|373555035|gb|EHP81605.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
Length = 627
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 83/196 (42%), Gaps = 32/196 (16%)
Query: 14 DVETTVPTRPGQRF-AILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGI 70
D+ETT G AI E GA+ V + E L ++TLV P P I SL+ GI
Sbjct: 36 DLETTGGRASGDNHDAITEIGAVKV--RGGEVLGEFATLVDPGRSIPPQIVSLT----GI 89
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V +P + + G + HN FD +R A P P P
Sbjct: 90 TTAMVCDAPRIESVLPAFLEFSRGAVLVAHNA-GFDIGFLRAAAERAHLPWPRP------ 142
Query: 131 LALLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL--------- 174
L L T R RR A +++++LA FG THR+LDD R ++VL
Sbjct: 143 LVLCTVRLARRVLTRDEAPSVRLSALARLFGASTTPTHRALDDARATVDVLHGLIERVGN 202
Query: 175 KYCATVLFLESSLPDI 190
+ T L S LPD+
Sbjct: 203 QGVHTYTELRSYLPDV 218
>gi|379735550|ref|YP_005329056.1| DNA-directed DNA polymerase [Blastococcus saxobsidens DD2]
gi|378783357|emb|CCG03025.1| DNA-directed DNA polymerase [Blastococcus saxobsidens DD2]
Length = 593
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCNGITPDAVVSSPTFADIA 85
AI E GA+ V + + L + TLV P A P IS L+ GIT V ++P +
Sbjct: 43 AITEIGAVKV--RGGQVLGEFQTLVDPGHAIPPYISVLT----GITSSMVAAAPRIGSVL 96
Query: 86 DTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR--AG 143
+ + G + HN FD ++ A AE G P ++D+ A+L +R R
Sbjct: 97 PSFLEFARGAVLVAHNA-PFDLGFLKAACAENGLAWPA-AASVDT-AVLARRLLSRDEVP 153
Query: 144 DMKMASLATYF-GLGQQTHRSLDDVRMNLEVL 174
+ K+A+LA YF THR+LDD R ++VL
Sbjct: 154 NCKLATLAPYFSATTSPTHRALDDARATVDVL 185
>gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
33806]
gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
33806]
Length = 2493
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 22/183 (12%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVETT + + I+E AI+V E L+ +STL+ P IS+ ++ +GI
Sbjct: 2100 AVVDVETTGFSTADR---IVEL-AIVVLDDDGENLYEWSTLINPMRD--ISNGAI--HGI 2151
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-RPAPEPKGTID 129
T V +PTF +AD V +L G+I+ HN + FD ++ F +G + A G ID
Sbjct: 2152 TAKDVAVAPTFDQVADDVAALLEGKIFVAHNAI-FDVRMLKSEFDRVGLKMAGLADGHID 2210
Query: 130 SLALLTQRF--GRRAGDMKMASLATYFGL-GQQTHRSLDDVRMNLEVLKYCATVLFLESS 186
+L L R+ D +A + G+ +Q H +L D R +L FL
Sbjct: 2211 TLRLAQNSLPISSRSLDSCLA----FMGITNEQAHSALSDARATGRLLTR-----FLLDE 2261
Query: 187 LPD 189
LP+
Sbjct: 2262 LPN 2264
>gi|345010759|ref|YP_004813113.1| DNA polymerase III subunit epsilon [Streptomyces violaceusniger Tu
4113]
gi|344037108|gb|AEM82833.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
4113]
Length = 638
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVET+ +R +L I V P E+ +STL+ P DP V+ +G
Sbjct: 21 ALVDVETS--GLMARRDRVLSVAVITVGPDG-EQTGEFSTLLNPGCDPG-----PVKVHG 72
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +PTF +A + +L R+ HN +FD + FA P + +
Sbjct: 73 LTVERLQGAPTFDQVAGRIGAMLQDRVLVAHNA-QFDYDFLAHEFARARTWLPVSQ-RLC 130
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
+LA L ++ GDMK+ +LA ++G+ QQ H +LDD R+ +L+
Sbjct: 131 TLA-LNRQVDPPTGDMKLGTLAAHYGIPQQRAHDALDDTRVLAGILR 176
>gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
gi|384147378|ref|YP_005530194.1| hypothetical protein RAM_11235 [Amycolatopsis mediterranei S699]
gi|399536002|ref|YP_006548664.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei
S699]
gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
gi|340525532|gb|AEK40737.1| hypothetical protein RAM_11235 [Amycolatopsis mediterranei S699]
gi|398316772|gb|AFO75719.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei
S699]
Length = 567
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 3 PTQDRSEIAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELIS 61
P +D + FD+ETT P P I E GA+ V + E L ++TLV P P I
Sbjct: 16 PLRD-TTFVVFDLETTGAPPGPS---GITEIGAVKV--RGGEVLGEFATLVNPGAP--IP 67
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
V GIT V +P ++ + + G + HN FD + +R A G
Sbjct: 68 PQIVSLTGITQAMVYDAPPIEEVLPAFLEFIGGAVLVAHNS-GFDTSHMRAACE--GHGY 124
Query: 122 PEPKGTIDSLALLTQRFGRR--AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
PK T+ L +R R G + +LA FG + THR+LDD R ++VL
Sbjct: 125 VWPKATVVCTVRLARRVVPRDEVGRYNLTALALLFGARTRPTHRALDDARATVDVL 180
>gi|336320547|ref|YP_004600515.1| DNA polymerase III, epsilon subunit [[Cellvibrio] gilvus ATCC
13127]
gi|336104128|gb|AEI11947.1| DNA polymerase III, epsilon subunit [[Cellvibrio] gilvus ATCC
13127]
Length = 622
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ V + + L + TLV P P + GIT ++ +P ++
Sbjct: 64 AITEIGAVKV--RGGQVLGEFQTLVDPGGP--VPPFIQVLTGITTAMLIGAPPIEEVLPA 119
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMK 146
+ HG + HN FD +R A A G P P+ +D++ L + R A + K
Sbjct: 120 FLEFAHGAVLVAHNAP-FDVGFLRAAAARTGHAWPGPR-VVDTVRLARRVVTRDEAPNHK 177
Query: 147 MASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+++LA F THR+LDD R ++VL
Sbjct: 178 LSTLAALFHAEVTPTHRALDDARATVDVL 206
>gi|430808473|ref|ZP_19435588.1| DNA polymerase III, epsilon subunit [Cupriavidus sp. HMR-1]
gi|429499167|gb|EKZ97615.1| DNA polymerase III, epsilon subunit [Cupriavidus sp. HMR-1]
Length = 530
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 89/201 (44%), Gaps = 42/201 (20%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRC 67
I F D+ETT QR I E G + V P ++E + TLV P + P + L+
Sbjct: 35 IVFVDLETTGAD--AQRDRITEIGVVEVGPDGIQE---WDTLVDPLTSIPPFVQGLT--- 86
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT D V PTFA IA+ + + L GR++ HN RFD ++ F G T
Sbjct: 87 -GITDDMVRGQPTFALIAEALAEKLQGRLFVAHNA-RFDYGFLKNEFRRAG-------VT 137
Query: 128 IDSLALLTQRFGR-------RAGDMKMASLATYFGLG-QQTHRSLDDVRM---------- 169
+ L T R R R G + +L FGL + HR+L D +
Sbjct: 138 FRADVLCTLRLSRSLFPSVERHG---LDALIARFGLTPKGRHRALADAELLWQFWQKIHE 194
Query: 170 --NLEVLKYCATVLFLESSLP 188
++++++ T L +SLP
Sbjct: 195 IYSVDLVESAVTSLVKHASLP 215
>gi|419622450|ref|ZP_14155681.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23216]
gi|380599384|gb|EIB19754.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23216]
Length = 253
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + ++ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFIKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GI + V ++P+ A + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GIIYEMVENAPSLAKVLSDFRFFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAATEIFKYC 227
>gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1]
gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1]
Length = 929
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P A P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQAVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|357398629|ref|YP_004910554.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|386354667|ref|YP_006052913.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|337765038|emb|CCB73747.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|365805175|gb|AEW93391.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
Length = 352
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 44 ELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNIL 103
E H YS + DP V +G+T + + +P FA +A+ + L GR+ HN +
Sbjct: 66 EDHWYSPVNPQRDPG-----PVWIHGLTTEVLRDAPLFAQVAEELTGRLAGRVLVAHNAV 120
Query: 104 RFDCARIREAFAEIGRPAPEPKG--TIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QT 160
FD + + FA GR AP TI +L + G + K+ SLA ++G+ Q +
Sbjct: 121 -FDWSMLAREFARAGRSAPVEHRLCTI----VLAKELGLPLPNHKLESLAAHYGVVQRRA 175
Query: 161 HRSLDDVRMNLEVLKYC---ATVLFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTS 217
H +LDD R+ E + A L L + W S A R RS A
Sbjct: 176 HHALDDARVLAEAFRPSLQRAAAAGLRLPLHACRPLTEWSSGPAIGRQRSVAPGGRGPYP 235
Query: 218 QNLSTPSSK 226
Q PS K
Sbjct: 236 QRGWRPSRK 244
>gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c]
gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c]
Length = 615
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 101/214 (47%), Gaps = 27/214 (12%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGI 70
FD+ETT T P I EFGA+ V + E + ++TLVR + P LI+ L+ GI
Sbjct: 55 FDLETT-GTGP-TTAEITEFGAVKV--RGGEVVAEFATLVRASTGIPPLITVLT----GI 106
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T + ++P A++ + + G + HN FD + ++ A +G P P T +
Sbjct: 107 TDAMLATAPPLAEVLPAFLEFIQGTVLVAHNA-GFDLSFLKAACERVGYPVP----TWEH 161
Query: 131 LALLTQRFGRR------AGDMKMASLATYF-GLGQQTHRSLDDVRMNLEVLKYCATVL-- 181
L T R RR + + K++SLA F + HR+L D R ++VL L
Sbjct: 162 LD--TARLARRIVTRDESPNNKLSSLARLFRARTEPCHRALADARATVDVLHGLFERLGN 219
Query: 182 FLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEG 215
++L D+ ++ VSP A R R A P G
Sbjct: 220 LGVTTLEDVHAYSARVSP-AQRRKRVLADDLPTG 252
>gi|372325341|ref|ZP_09519930.1| DNA polymerase III alpha subunit [Oenococcus kitaharae DSM 17330]
gi|366984149|gb|EHN59548.1| DNA polymerase III alpha subunit [Oenococcus kitaharae DSM 17330]
Length = 1437
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
SE FD+ETT + + I++ A+ + K L + + P P +S ++
Sbjct: 408 SEYTIFDIETTGLSAVSDK--IIQLSAVKM--KHGTVLDTFDEFINPGFP--LSEQTINL 461
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT D V +S A++ + D G I AGHN++RFD + A + P +
Sbjct: 462 TGITDDLVRNSKPEAEVLSSFQDFYKGTILAGHNVIRFDYGFVNHALVQHQLPKIDTL-V 520
Query: 128 IDSLAL---LTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
+D+L L L FGR D L+ F + + HR++DD
Sbjct: 521 LDTLNLARWLYPNFGRYTLDF----LSKKFNVNLEHHHRAIDD 559
>gi|392538706|ref|ZP_10285843.1| hypothetical protein Pmarm_11275 [Pseudoalteromonas marina mano4]
Length = 732
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT + G R I E G + V K+ + ++TL+ P I S + GI+
Sbjct: 570 DIETTGSLKGGNR--ITEIGIVKVQHGKV--IDTWTTLINPQRH--IPSFITKLTGISDG 623
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V ++P FADIA + D L G I+ HN+ FD I++ G PK +
Sbjct: 624 MVYNAPVFADIAQPLLDKLAGSIFVAHNV-NFDYGFIKKECEIAGHFFKMPKMCT---VV 679
Query: 134 LTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
++R + + +L+ +F L + HR+L D E+L
Sbjct: 680 ESRRAFKGLKSYSLGNLSAHFNLNLTSHHRALADATATAELL 721
>gi|443293084|ref|ZP_21032178.1| DNA polymerase III polC-type [Micromonospora lupini str. Lupac 08]
gi|385882942|emb|CCH20329.1| DNA polymerase III polC-type [Micromonospora lupini str. Lupac 08]
Length = 584
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT G I E GA+ V + E+L +TLV P P I GIT
Sbjct: 36 DLETTGGAPDGG--GITEIGAVKV--RGGEQLGELATLVNPGQP--IPPFITVLTGITQA 89
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
+V +P + + + + + HN +D ++ A A+ G P P+ +D+ AL
Sbjct: 90 MLVPAPPIEQVLPSFLEFIADAVLVAHNA-PYDVGFLKAACAKHGHRWPNPR-VLDTAAL 147
Query: 134 LTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+ R + K+ +LA YF Q THR+LDD + ++VL
Sbjct: 148 ARRVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVL 190
>gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339632219|ref|YP_004723861.1| hypothetical protein MAF_22020 [Mycobacterium africanum GM041182]
gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339331575|emb|CCC27272.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length = 645
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97]
gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
172]
gi|378771921|ref|YP_005171654.1| hypothetical protein BCGMEX_2194 [Mycobacterium bovis BCG str.
Mexico]
gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341602110|emb|CCC64784.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau
RDJ]
gi|356594242|gb|AET19471.1| Hypothetical protein BCGMEX_2194 [Mycobacterium bovis BCG str.
Mexico]
Length = 645
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>gi|449064248|ref|YP_007431331.1| hypothetical protein K60_022730 [Mycobacterium bovis BCG str. Korea
1168P]
gi|449032756|gb|AGE68183.1| hypothetical protein K60_022730 [Mycobacterium bovis BCG str. Korea
1168P]
Length = 647
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 67 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 122
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 123 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 175
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 176 APSVRLAALARLFAVASNPTHRALDDARATVDVL 209
>gi|15609328|ref|NP_216707.1| Conserved hypothetical protein [Mycobacterium tuberculosis H37Rv]
gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11]
gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis
H37Ra]
gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN
1435]
gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
02_1987]
gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210]
gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN
4207]
gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN
R506]
gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN
V2475]
gi|375296002|ref|YP_005100269.1| hypothetical protein TBSG_01801 [Mycobacterium tuberculosis KZN
4207]
gi|392386834|ref|YP_005308463.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392432212|ref|YP_006473256.1| hypothetical protein TBXG_001772 [Mycobacterium tuberculosis KZN
605]
gi|397674076|ref|YP_006515611.1| exonuclease, DNA polymerase III, epsilon subunit [Mycobacterium
tuberculosis H37Rv]
gi|424804529|ref|ZP_18229960.1| DNA polymerase III [Mycobacterium tuberculosis W-148]
gi|424947873|ref|ZP_18363569.1| hypothetical protein NCGM2209_2508 [Mycobacterium tuberculosis
NCGM2209]
gi|1722908|sp|Q10384.1|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247
gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
02_1987]
gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148]
gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|358232388|dbj|GAA45880.1| hypothetical protein NCGM2209_2508 [Mycobacterium tuberculosis
NCGM2209]
gi|378545385|emb|CCE37662.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392053621|gb|AFM49179.1| hypothetical protein TBXG_001772 [Mycobacterium tuberculosis KZN
605]
gi|395138981|gb|AFN50140.1| exonuclease, DNA polymerase III, epsilon subunit [Mycobacterium
tuberculosis H37Rv]
gi|440581666|emb|CCG12069.1| hypothetical protein MT7199_2221 [Mycobacterium tuberculosis
7199-99]
gi|444895708|emb|CCP44968.1| Conserved hypothetical protein [Mycobacterium tuberculosis H37Rv]
Length = 645
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>gi|385995152|ref|YP_005913450.1| hypothetical protein [Mycobacterium tuberculosis CCDC5079]
gi|339295106|gb|AEJ47217.1| hypothetical protein CCDC5079_2027 [Mycobacterium tuberculosis
CCDC5079]
Length = 645
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
Length = 241
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPA 55
M T R I FD ETT G + I+E GA+ + +KL + H Y RP
Sbjct: 1 MKATNQR--IIVFDTETTGMNMTGPHYEGHRIIEIGAVEIINRKLTGKTFHVYIKPDRPI 58
Query: 56 DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA 115
DPE ++ +GIT + ++ P++ADI D + G HN FD + F
Sbjct: 59 DPE-----AIDVHGITDEFLIGKPSYADIHQEFIDFIDGAELVAHNA-SFDIGFMDYEFQ 112
Query: 116 EIG---RPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNL 171
+G + + D+L + + F G+R + L + +G+ +HR+L ++
Sbjct: 113 LMGSDLKKTEDICKVTDTLEMAKRLFPGKRN---NLDILCSRYGI-DNSHRTLHGALLDA 168
Query: 172 EVL 174
E+L
Sbjct: 169 EIL 171
>gi|433627308|ref|YP_007260937.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
gi|432154914|emb|CCK52156.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
Length = 645
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|422813222|ref|ZP_16861597.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis
CDC1551A]
gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis
CDC1551A]
Length = 647
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 67 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 122
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 123 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 175
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 176 APSVRLAALARLFAVASNPTHRALDDARATVDVL 209
>gi|385998966|ref|YP_005917265.1| hypothetical protein MTCTRI2_2226 [Mycobacterium tuberculosis
CTRI-2]
gi|344220013|gb|AEN00644.1| hypothetical protein MTCTRI2_2226 [Mycobacterium tuberculosis
CTRI-2]
Length = 645
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>gi|340627196|ref|YP_004745648.1| hypothetical protein MCAN_22131 [Mycobacterium canettii CIPT
140010059]
gi|340005386|emb|CCC44545.1| conserved hypothetical protein [Mycobacterium canettii CIPT
140010059]
Length = 645
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551]
gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
SUMu001]
gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
SUMu002]
gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
SUMu003]
gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
SUMu004]
gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
SUMu005]
gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
SUMu006]
gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
SUMu007]
gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
SUMu008]
gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
SUMu009]
gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
SUMu010]
gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
SUMu011]
gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
SUMu012]
gi|385991534|ref|YP_005909832.1| hypothetical protein [Mycobacterium tuberculosis CCDC5180]
gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium
tuberculosis CDC1551]
gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
SUMu001]
gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
SUMu002]
gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
SUMu003]
gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
SUMu004]
gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
SUMu005]
gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
SUMu006]
gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
SUMu007]
gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
SUMu008]
gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
SUMu009]
gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
SUMu010]
gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
SUMu011]
gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
SUMu012]
gi|339298727|gb|AEJ50837.1| hypothetical protein CCDC5180_2000 [Mycobacterium tuberculosis
CCDC5180]
gi|379028469|dbj|BAL66202.1| hypothetical protein ERDMAN_2410 [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
Length = 637
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 57 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 112
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 113 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 165
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 166 APSVRLAALARLFAVASNPTHRALDDARATVDVL 199
>gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a]
gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
Length = 580
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 15/193 (7%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGITPDAVVSSPTFADIAD 86
I E GA+ V + E L STLVRP+ P ++S ++ GIT V ++P A++
Sbjct: 38 ITEIGAVRV--RGGEVLAEMSTLVRPSAGIPPMVSVIT----GITDAMVATAPAEAEVVP 91
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDM 145
T + G + HN FD +R A G P P + +D+L + + R A D
Sbjct: 92 TFLEFARGAVLVAHNAP-FDLGFLRAAAQRCGYPPPAWE-HLDTLRIARRLVSRDEAPDC 149
Query: 146 KMASLATYFGLGQQ-THRSLDDVRMNLEVLKYCATVLFLES--SLPDIFTVNSWVSPNAT 202
++ASLA F + HR+L D R ++VL L +L ++ ++ VSP A
Sbjct: 150 RLASLARLFRSSTEPCHRALADARATVDVLHGLFERLGNAGVRTLEELHEYSARVSP-AQ 208
Query: 203 TRSRSNAKSSPEG 215
R R A P G
Sbjct: 209 RRKRYLADGLPTG 221
>gi|433631308|ref|YP_007264936.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
gi|432162901|emb|CCK60293.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
Length = 645
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQHS--IPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
14672]
gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
14672]
Length = 327
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 23/247 (9%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVETT R + I+ + + E H Y+ + DP V +G+
Sbjct: 24 AVVDVETTGLARDDR---IVSAAVYRLDARGEVEDHWYTVVNPERDPG-----PVWIHGL 75
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T +A+ +P F D+A+ L GR+ HN + FD I +A AP K + +
Sbjct: 76 TSEALEGAPLFRDVAEEFATRLEGRVLVAHNAV-FDWQMIAREYARARSEAPV-KQRLCT 133
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK---YCATVLFLESS 186
+A L++ G + K+ SLA +FG+ Q + H +LDD R+ E + A +
Sbjct: 134 IA-LSKELGLPLPNHKLESLAAHFGVVQRRAHHALDDARVLAEAFRPSLRAAAASGVRLP 192
Query: 187 LPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSK---FKFENASNASPPDQGKE 243
L + + W T R R+ +++P G PS + + N +P + K+
Sbjct: 193 LHECRPLTEW-----TDRPRTGQQAAPGGYRPTGWRPSRRRPACPYPNPGRYAPGGRLKQ 247
Query: 244 EIHPIFS 250
+ FS
Sbjct: 248 GMRVAFS 254
>gi|345021387|ref|ZP_08785000.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Ornithinibacillus scapharcae TW25]
Length = 973
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 13/157 (8%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGI 70
D+ETT + Q I+E G ++V ++ + +STL+ P P I+ L+ GI
Sbjct: 53 LDLETTGNSSTNQD-KIIEVGMVVVENDQI--VDEFSTLLHPGKSIPPFITKLT----GI 105
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
D V +PTF +ADT+ DIL HN+ FD + IG+ A ID+
Sbjct: 106 QDDDVKEAPTFDKVADTIVDILENSYLIAHNV-PFDLGFLNAELTAIGK-ARLNNPVIDT 163
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDD 166
+ LT+ +A K+ LA Y + HR+L D
Sbjct: 164 VE-LTRILYPQAPGFKLGILAEYLDISHDNPHRALSD 199
>gi|379708059|ref|YP_005263264.1| DNA-directed DNA polymerase [Nocardia cyriacigeorgica GUH-2]
gi|374845558|emb|CCF62624.1| DNA-directed DNA polymerase [Nocardia cyriacigeorgica GUH-2]
Length = 583
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT T P + AI E GA+ V + E L ++TLV P I V GIT
Sbjct: 32 DLETT-GTSP-ESDAITEIGAVKV--RGGEVLGEFATLVDPG--RAIPPAVVHVTGITTA 85
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V ++P + + G + HN RFD A +R A A G P P + +
Sbjct: 86 MVCAAPPIEAVLPGFLEFAAGAVLVAHNA-RFDMAFLRAAAARCGTPWPAAQ------VV 138
Query: 134 LTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
T R RR A ++++ LA G Q THR+L D R ++VL
Sbjct: 139 CTVRLARRVLARDEAPSVRLSVLARVLGASTQPTHRALADARATVDVL 186
>gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
gi|365104750|ref|ZP_09334142.1| DNA polymerase III subunit epsilon [Citrobacter freundii
4_7_47CFAA]
gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
gi|363643691|gb|EHL82995.1| DNA polymerase III subunit epsilon [Citrobacter freundii
4_7_47CFAA]
Length = 245
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + FA++ R P+
Sbjct: 69 HGIADEFLLDKPTFADVADEFLDYIRGAELVIHNA-SFDIGFMDYEFAKLKRDIPKTNEF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKITDSLALARKMFPGKR 145
>gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3]
gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3]
Length = 584
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA--DPELISSLSVRCNGI 70
FD+ETT T PG R I E GA+ V ++ L +TLVRP P ++S L+ GI
Sbjct: 33 FDLETT-GTSPG-RDEITEIGAVRVRGGRI--LAEMATLVRPGVGIPPMVSVLT----GI 84
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V ++P + T + G + HN FD +R A G P P + +D+
Sbjct: 85 TDVMVATAPPVTQVLPTFLEFARGAVLVAHNAP-FDLGFLRAAVELCGYPVPVWE-YLDT 142
Query: 131 LALLTQRFGR-RAGDMKMASLATYF-GLGQQTHRSLDDVRMNLEVLKYCATVLFLE--SS 186
L + + R + D ++ SLA+ F + HR+L D R ++VL L ++
Sbjct: 143 LRIARRVVTRDESPDCRLTSLASLFRSPVEPRHRALADARATVDVLHGLFERLGNAGVTT 202
Query: 187 LPDIFTVNSWVSPNATTRSRSNAKSSPEG 215
L D+ +S VSP A R R A P G
Sbjct: 203 LEDLHDYSSRVSP-AQRRKRHLADGLPTG 230
>gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM
43017]
gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora viridis DSM 43017]
Length = 570
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 9 EIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
E+ F D+ETT T G I E GA+ V + E + ++TLV P P I V
Sbjct: 14 EVTFVVVDLETTGVTPDGA--GITEIGAVKV--RGGEVVGEFATLVDPGVP--IPPQIVA 67
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
GITP V S+P + T + + G + HN FD + ++ A G P+P
Sbjct: 68 LTGITPAMVRSAPRIEQVLPTFLEFVSGAVLVAHNA-GFDVSFLKAACQTHGYEWPKPT- 125
Query: 127 TIDSLALLTQRFGRR-AGDMKMASLATYFGL-GQQTHRSLDDVRMNLEVL 174
+ +L L + GR+ ++++LA+ FG HR+LDD + ++VL
Sbjct: 126 VVCTLKLARRVLGRQETRGHRLSTLASLFGARSTPKHRALDDAKATVDVL 175
>gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
Length = 604
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 10/163 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT G I E GA+ V + EEL +TLV P P I GIT
Sbjct: 56 DLETTGGAPDGG--GITEIGAVKV--RGGEELGVLATLVNPGVP--IPPFITVLTGITQA 109
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
+V +P + + + + + HN +D ++ A A G P P+ +D+ AL
Sbjct: 110 MLVPAPPIEQVLPSFLEFVADAVLVAHNA-PYDVGFLKAACARHGYRWPNPR-VLDTAAL 167
Query: 134 LTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+ GR + K+ +LA+YF + THR+LDD + ++VL
Sbjct: 168 ARRVLGRDEVPNRKLGTLASYFRTATRPTHRALDDAKATVDVL 210
>gi|422695886|ref|ZP_16753864.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4244]
gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4244]
Length = 929
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQEGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
Length = 241
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPA 55
M T R I FD ETT G + I+E GA+ + +KL + H Y RP
Sbjct: 1 MKATNQR--IIVFDTETTGMNMTGPHYEGHRIVEIGAVEIINRKLTGKTFHVYIKPDRPI 58
Query: 56 DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA 115
DPE ++ +GIT + ++ P++ADI D + G HN FD + F
Sbjct: 59 DPE-----AIDVHGITDEFLIGKPSYADIHQEFIDFIDGAELVAHNA-SFDIGFMDYEFQ 112
Query: 116 EIG---RPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNL 171
+G + + D+L + + F G+R + L + +G+ +HR+L ++
Sbjct: 113 LMGSDLKKTEDICKVTDTLEMAKRLFPGKRN---NLDILCSRYGI-DNSHRTLHGALLDA 168
Query: 172 EVL 174
E+L
Sbjct: 169 EIL 171
>gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1]
Length = 403
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ V + E + STLV P + + R GIT + +P +
Sbjct: 41 AITEVGAVSV--RGGESIGELSTLVDPGT--RVPADVTRLTGITNGMLAGAPPLGAVLPP 96
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR------R 141
V D+L G + HN FD +R A RP P P L T R R
Sbjct: 97 VLDLLRGSVLVAHNAP-FDTGFLRAACERHERPWPSPP------VLCTARLARAVLPRSE 149
Query: 142 AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKY 176
+++ +LA +FG HR+L D R +EVL +
Sbjct: 150 CPSVRLGALAAHFGCRTTPDHRALTDARATVEVLHH 185
>gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 246
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + +++ PTFAD+AD D + G HN FD + F+++ R P+
Sbjct: 69 HGIADEFLLNKPTFADVADEFLDYIRGAELVIHNA-SFDIGFMDYEFSKLNRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|455646772|gb|EMF25799.1| DNA polymerase III subunit epsilon [Citrobacter freundii GTC 09479]
Length = 242
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + FA++ R P+
Sbjct: 66 HGIADEFLLDKPTFADVADEFLDYIRGAELVIHNA-SFDIGFMDYEFAKLKRDIPKTNEF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|395231458|ref|ZP_10409747.1| DNA polymerase subunit III epsilon [Citrobacter sp. A1]
gi|424731313|ref|ZP_18159898.1| dna polymerase epsilon subunit [Citrobacter sp. L17]
gi|394714761|gb|EJF20657.1| DNA polymerase subunit III epsilon [Citrobacter sp. A1]
gi|422894287|gb|EKU34101.1| dna polymerase epsilon subunit [Citrobacter sp. L17]
Length = 245
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + FA++ R P+
Sbjct: 69 HGIADEFLLDKPTFADVADEFLDYIRGAELVIHNA-SFDIGFMDYEFAKLKRDIPKTNEF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKITDSLALARKMFPGKR 145
>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R712]
gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
S613]
gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
DAPTO 512]
gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis DAPTO 516]
gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R712]
gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
S613]
gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
DAPTO 512]
gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis DAPTO 516]
Length = 929
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQEGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|430375670|ref|ZP_19430073.1| DNA polymerase III subunit epsilon [Moraxella macacae 0408225]
gi|429540901|gb|ELA08929.1| DNA polymerase III subunit epsilon [Moraxella macacae 0408225]
Length = 586
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKK--LEELHNYSTLVRPADPELISSLSVRCNGI 70
D ETT G I+E G + + +K E+LH Y +R D E+I R +GI
Sbjct: 359 LDTETTGFDAQGDD-RIVEIGVVELINRKPTGEKLHVYINPLRDMDEEVI-----RVHGI 412
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-GTID 129
+ + PTFA + +V+D L G HN FD + ++ FA IG E +D
Sbjct: 413 HSEFLAQMPTFAQVGKSVYDFLQGAELIAHNA-NFDVSFLQAEFARIGLADFEQTISVVD 471
Query: 130 SLALLTQRF-GRR 141
SLA+ Q + G+R
Sbjct: 472 SLAIAKQMYAGQR 484
>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
Length = 405
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRC 67
+AF D+ETT + R I E G ++V + + ++TLV P A P I L+
Sbjct: 15 LAFVDLETTGGSAVEHR--ITEIGVVVVSA---DHVSTWTTLVNPRQAIPPFIQQLT--- 66
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GIT D V +PTFAD+A +F+ L G+++ HN FD +R F G
Sbjct: 67 -GITDDMVRGAPTFADVASALFERLDGKLFVAHNA-SFDRGFLRAEFERAG 115
>gi|119471121|ref|ZP_01613653.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
gi|119445777|gb|EAW27059.1| hypothetical protein ATW7_09096 [Alteromonadales bacterium TW-7]
Length = 745
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT + G R + E G + V K+ + ++TL+ P I S + GI+
Sbjct: 583 DIETTGGLKGGNR--VTEIGIVKVQHGKV--IDTWTTLINPQRH--IPSFITKLTGISDG 636
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V ++P FADIA + D L G I+ HN+ FD I++ G PK +
Sbjct: 637 MVYNAPVFADIAQPLLDKLAGSIFVAHNV-NFDYGFIKKECEVAGHFFKMPKMCT---VV 692
Query: 134 LTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
++R + + +L+ +F L + HR+L D E+L
Sbjct: 693 ESRRAFKGLKSYSLGNLSAHFNLNLTSHHRALADATATAELL 734
>gi|384519199|ref|YP_005706504.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
62]
gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
62]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
gi|422724797|ref|ZP_16781273.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2137]
gi|424675732|ref|ZP_18112629.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
599]
gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2137]
gi|402350368|gb|EJU85272.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
599]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis HH22]
gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis HH22]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|414071981|ref|ZP_11407937.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. Bsw20308]
gi|410805561|gb|EKS11571.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. Bsw20308]
Length = 732
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT + G R I E G + V K+ + N+++LV P P I+SL+ GI+
Sbjct: 571 DIETTGGLKGGNR--ITEIGLVKVQYGKV--IDNWTSLVNPERHIPGFITSLT----GIS 622
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V ++P FADI + D L G I+ HN+ FD I++ G PK
Sbjct: 623 DSMVYNAPVFADIVKPLLDKLAGSIFVAHNV-NFDYGFIKKECEVAGHFFKMPKMCT--- 678
Query: 132 ALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
+ +++ + + +L+++F L + HR+L D E+L
Sbjct: 679 VVESRKAFKGLKSYSLGNLSSHFNLNLTSHHRALADATATAELL 722
>gi|424686651|ref|ZP_18123317.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV25]
gi|402367046|gb|EJV01397.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV25]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|237807686|ref|YP_002892126.1| DNA polymerase III subunit epsilon [Tolumonas auensis DSM 9187]
gi|237499947|gb|ACQ92540.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187]
Length = 249
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 23/216 (10%)
Query: 1 MGPTQDRSEIAFFDVETTV------PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP 54
M P Q + D ETT P G R I+E G + V ++L H Y ++P
Sbjct: 1 MNPMQTNRYV-ILDTETTGMNQSGGPVYIGHR--IIEIGCVEVINRRLTGNH-YHVYIKP 56
Query: 55 ADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAF 114
L+ ++R +GIT + P FA IA D + G HN FD I F
Sbjct: 57 --DRLVDEEAIRVHGITDAFLADKPPFAAIAQEFRDFIRGAELVIHNA-SFDVGFIDHEF 113
Query: 115 AEIG--RPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNL 171
++G + DSLAL +F G+R + +L T FG+ +HR+L ++
Sbjct: 114 NKLGWTERVKDICRVTDSLALARGQFPGKRN---SLDALCTRFGI-DNSHRTLHGALLDA 169
Query: 172 EVLKYCATVLFLESSLPDIFTVNSWVSPNATTRSRS 207
E+L A V L + +++ V+ N + S S
Sbjct: 170 EIL---ADVYLLMTGGQTRLELHNTVNDNNSASSAS 202
>gi|422729573|ref|ZP_16785974.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0012]
gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0012]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|162455854|ref|YP_001618221.1| DNA polymerase III subunit epsilon [Sorangium cellulosum So ce56]
gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum So ce56]
Length = 258
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 14/176 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
IAF DVETT G R I+E G +V + E L Y+ L+ P P I + S +G
Sbjct: 45 IAFVDVETTGRDPAGDR--IIELG--IVIGRSGEILTRYNWLIHPGRP--IPAESTAIHG 98
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG----RPAPEPK 125
I V P+FA++A+ + G I A +N FD + + +G P P +
Sbjct: 99 IKDADVEGKPSFAEVAEEILGCFKGAIPAAYNAT-FDRSFLLAELERVGMRPREPPPAMR 157
Query: 126 GTIDSLALLT--QRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCA 178
+D + LT + + + +A G+ ++ HR+ DD L+VL A
Sbjct: 158 REVDWVDPLTFARELYKNEESRALGDMAARLGISLEKAHRATDDAEAALQVLYALA 213
>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2134]
gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus sp. 7L76]
gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2134]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0860]
gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0860]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis ATCC 29200]
gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
faecalis TUSoD Ef11]
gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0102]
gi|384513772|ref|YP_005708865.1| DNA-directed DNA polymerase III subunit epsilon [Enterococcus
faecalis OG1RF]
gi|422693172|ref|ZP_16751186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0031]
gi|422701382|ref|ZP_16759223.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1342]
gi|422725994|ref|ZP_16782451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0312]
gi|430359629|ref|ZP_19425881.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1X]
gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis ATCC 29200]
gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
faecalis TUSoD Ef11]
gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0102]
gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0031]
gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0312]
gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1342]
gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1RF]
gi|429513253|gb|ELA02840.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1X]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|29376872|ref|NP_816026.1| DNA polymerase III, subunit epsilon/ATP-dependent helicase DinG
[Enterococcus faecalis V583]
gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis TX0104]
gi|422714924|ref|ZP_16771648.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309A]
gi|422717399|ref|ZP_16774084.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309B]
gi|424676258|ref|ZP_18113135.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV103]
gi|424680566|ref|ZP_18117369.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV116]
gi|424683143|ref|ZP_18119897.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV129]
gi|424689584|ref|ZP_18126155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV31]
gi|424694056|ref|ZP_18130465.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV37]
gi|424697635|ref|ZP_18133957.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV41]
gi|424700132|ref|ZP_18136330.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV62]
gi|424703027|ref|ZP_18139164.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV63]
gi|424710147|ref|ZP_18143613.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV65]
gi|424717894|ref|ZP_18147168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV68]
gi|424721118|ref|ZP_18150216.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV72]
gi|424725024|ref|ZP_18153951.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV73]
gi|424727261|ref|ZP_18155894.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV81]
gi|424742049|ref|ZP_18170383.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV85]
gi|424751181|ref|ZP_18179213.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV93]
gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis V583]
gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis TX0104]
gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309B]
gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309A]
gi|402353864|gb|EJU88686.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV116]
gi|402357517|gb|EJU92224.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV103]
gi|402365909|gb|EJV00323.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV129]
gi|402367669|gb|EJV02008.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV31]
gi|402371838|gb|EJV05982.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV37]
gi|402374508|gb|EJV08524.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV62]
gi|402375166|gb|EJV09158.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV41]
gi|402383634|gb|EJV17229.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV68]
gi|402383859|gb|EJV17438.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV65]
gi|402385682|gb|EJV19214.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV63]
gi|402392314|gb|EJV25578.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV72]
gi|402392534|gb|EJV25792.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV73]
gi|402397251|gb|EJV30279.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV81]
gi|402401037|gb|EJV33837.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV85]
gi|402405735|gb|EJV38319.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV93]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0109]
gi|422703714|ref|ZP_16761534.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1302]
gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0109]
gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1302]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0411]
gi|422684239|ref|ZP_16742482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4000]
gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0411]
gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4000]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis PC1.1]
gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4248]
gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0635]
gi|397700569|ref|YP_006538357.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
D32]
gi|422736826|ref|ZP_16793088.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1341]
gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis PC1.1]
gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4248]
gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0635]
gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1341]
gi|397337208|gb|AFO44880.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
D32]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|422732373|ref|ZP_16788713.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0645]
gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0645]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|422697807|ref|ZP_16755738.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1346]
gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1346]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0470]
gi|422736936|ref|ZP_16793193.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2141]
gi|428767587|ref|YP_007153698.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis str. Symbioflor 1]
gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0470]
gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2141]
gi|427185760|emb|CCO72984.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis str. Symbioflor 1]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
gi|422706950|ref|ZP_16764647.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0043]
gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0043]
Length = 929
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786]
Length = 408
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRC 67
+AF D+ETT + R I E G ++V + + ++TLV P A P I L+
Sbjct: 15 LAFVDLETTGGSAVEHR--ITEIGVVVVSA---DHVSTWTTLVNPRQAIPPFIQQLT--- 66
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GIT D V +PTFAD+A +F+ L G+++ HN FD +R F G
Sbjct: 67 -GITDDMVRGAPTFADVASALFERLDGKLFVAHNA-SFDRGFLRAEFERAG 115
>gi|422719831|ref|ZP_16776454.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0017]
gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0017]
Length = 929
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|424760609|ref|ZP_18188221.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R508]
gi|402403302|gb|EJV35981.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R508]
Length = 929
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|422709920|ref|ZP_16767266.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0027]
gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0027]
Length = 929
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0855]
gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0855]
Length = 929
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|433635258|ref|YP_007268885.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
gi|432166851|emb|CCK64354.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
Length = 645
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQ--RSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTVRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVRLAALAQLFAVASNPTHRALDDARATVDVL 207
>gi|430370051|ref|ZP_19428850.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis M7]
gi|429515600|gb|ELA05111.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis M7]
Length = 923
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 2 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 57
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 58 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-P 111
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 112 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 163
>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
gi|422688267|ref|ZP_16746425.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0630]
gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0630]
Length = 929
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+D+ A D+ETT R I++FG +LV K+ + N++T V P P+ I S
Sbjct: 8 KDKQVYAVVDLETTGTDPTSDR--IIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQS 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ V +P F D+A T++ L I+ HN+ FD + G P P
Sbjct: 64 LT----GISNTQVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYDFLARELVRCGTP-P 117
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
ID++ L Q F +++ L+ GL + H++ D ++ E+L
Sbjct: 118 LTIPAIDTVE-LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|419960269|ref|ZP_14476312.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae GS1]
gi|388604858|gb|EIM34085.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae GS1]
Length = 243
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + F+++ R P+
Sbjct: 66 HGIADEFLLDKPTFADVADEFLDYIRGAELVIHNA-SFDIGFMDYEFSKLNRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|386856057|ref|YP_006260234.1| DNA polymerase III subunit epsilon [Deinococcus gobiensis I-0]
gi|379999586|gb|AFD24776.1| DNA polymerase III, epsilon subunit [Deinococcus gobiensis I-0]
Length = 179
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 26/174 (14%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP----ADPELISSLSV 65
+ FD+ETT P +R A++E GA+ V ++EE Y TLVRP + LI +
Sbjct: 3 VVVFDLETT-GLSP-ERDAVVEIGAVRVVDGRVEETQKYETLVRPTGAGGERMLIPWRAE 60
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG---RPAP 122
R +GI+ + V +PT A++ + + HNI FD +R A G +PA
Sbjct: 61 RVHGISNEMVEDAPTLAEVLPEFLEFVGDSAVVAHNI-GFDAGFMRVGAARHGLLWKPAA 119
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMAS----LATYFGLG---QQTHRSLDDVRM 169
E L T + RRA + A LA GL HRS DV++
Sbjct: 120 E---------LCTVQLSRRAFPRERAHNLTVLAERLGLNFAPGGRHRSFGDVQV 164
>gi|334123334|ref|ZP_08497360.1| DNA-directed DNA polymerase III epsilon subunit [Enterobacter
hormaechei ATCC 49162]
gi|333390818|gb|EGK61947.1| DNA-directed DNA polymerase III epsilon subunit [Enterobacter
hormaechei ATCC 49162]
Length = 246
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + F+++ R P+
Sbjct: 69 HGIADEFLLDKPTFADVADEFLDYIRGAELVIHNA-SFDIGFMDYEFSKLNRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|376260767|ref|YP_005147487.1| DNA polymerase III subunit alpha [Clostridium sp. BNL1100]
gi|373944761|gb|AEY65682.1| DNA polymerase III, alpha chain [Clostridium sp. BNL1100]
Length = 1433
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
+ FD+ETT P Q I E GA+ V ++ + +S V P I S V+
Sbjct: 421 DFVVFDIETT-GLNPHQD-KITEIGAVKVRNGQI--VDRFSAFVNPGVS--IPSFIVKLT 474
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT D V +P + + + + G + HN FD I++ +G P I
Sbjct: 475 GITDDMVKDAPPIEQVLNEFMEFIQGSVLVAHN-ANFDVGFIKQNAKLMGEKVRNP--YI 531
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVL 181
D+L L + F G K+ +A + + + HR++DD ++ +C VL
Sbjct: 532 DTLELCRKMFP-ELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFMHCINVL 584
>gi|413958472|ref|ZP_11397711.1| DNA polymerase III subunit epsilon [Burkholderia sp. SJ98]
gi|413941052|gb|EKS73012.1| DNA polymerase III subunit epsilon [Burkholderia sp. SJ98]
Length = 245
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--IIEIGCVELVNRRLTGNNLHLYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA+IA + D + G HN FD + FA +G P A G
Sbjct: 58 GLTTEFLSDKPKFAEIAAQLRDFIAGAELIIHNA-PFDVGFLDMEFALLGLPKIAETCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
IDSLA Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDSLAQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|288922213|ref|ZP_06416412.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
gi|288346447|gb|EFC80777.1| DNA polymerase III, epsilon subunit [Frankia sp. EUN1f]
Length = 565
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
I E GA+ V + + L S+LVR + P I + GIT + ++PT ++ T
Sbjct: 46 ITEIGAVKV--RGGQVLGEMSSLVRASTP--IPPVVSVLTGITDSMLATAPTLDEVVPTF 101
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR--AGDMK 146
+ G + HN FD +R A G P P + +D++ L+ +R R A + +
Sbjct: 102 LEFSRGAVLVAHNAA-FDLGFLRAAAQACGYPVPAWE-HLDTV-LIARRVVTRDEAPNCR 158
Query: 147 MASLATYFGLGQQ-THRSLDDVRMNLEVLKYCATVL--FLESSLPDIFTVNSWVSPNATT 203
+ASLAT FG + HR+L D R + VL L ++L D+ ++ VSP A
Sbjct: 159 LASLATLFGSPTEPNHRALADARATVAVLHGLFERLGNLGVTTLEDVREYSARVSP-AQR 217
Query: 204 RSRSNAKSSPEG 215
R R A P G
Sbjct: 218 RKRHLADDLPTG 229
>gi|421845700|ref|ZP_16278853.1| DNA polymerase III subunit epsilon [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|411773235|gb|EKS56806.1| DNA polymerase III subunit epsilon [Citrobacter freundii ATCC 8090
= MTCC 1658]
Length = 242
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + FA++ R P+
Sbjct: 66 HGIADEFLLDKPTFADVADEFLDYIRGAELVIHNA-SFDIGFMDYEFAKLRRDIPKTNEF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|359442103|ref|ZP_09231982.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20429]
gi|358036043|dbj|GAA68231.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20429]
Length = 732
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT + G R I E G + V K+ + ++ LV P P I+SL+ GI+
Sbjct: 571 DIETTGGLKGGNR--ITEIGIVKVQHGKV--IDTWTNLVNPERHIPGFITSLT----GIS 622
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V ++P FADIA + D L G I+ HN+ FD I++ G PK
Sbjct: 623 DSMVRNAPVFADIAKPLLDKLAGSIFVAHNV-NFDYGFIKKECEMAGHFFKMPKMCT--- 678
Query: 132 ALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
+ +++ + + +L+T+F L + HR+L D E+L
Sbjct: 679 VVESRKAFKGLKSYSLGNLSTHFNLNLTSHHRALADATATAELL 722
>gi|365875678|ref|ZP_09415204.1| DNA polymerase iii, epsilon subunit [Elizabethkingia anophelis Ag1]
gi|442587456|ref|ZP_21006273.1| 3'-5' exonuclease [Elizabethkingia anophelis R26]
gi|365756523|gb|EHM98436.1| DNA polymerase iii, epsilon subunit [Elizabethkingia anophelis Ag1]
gi|442562897|gb|ELR80115.1| 3'-5' exonuclease [Elizabethkingia anophelis R26]
Length = 407
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 48 YSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDC 107
+ +LV P D +IS + GIT V ++P F +IA + +I G + GHN+ FD
Sbjct: 36 FISLVNPED--VISPYVQKLTGITAKMVKTAPKFHEIAKRIVEITEGTVIVGHNV-EFDY 92
Query: 108 ARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGL-GQQTHRSLDD 166
IR++F +G + TID++ L ++ + L+ G+ HR+ D
Sbjct: 93 RMIRQSFHRLGYNY--ERETIDTIP-LAKKLIPNEESYSLGKLSKSLGIPLTDRHRASGD 149
Query: 167 VRMNLEVLKYCAT 179
R LE+ K T
Sbjct: 150 ARATLELFKILLT 162
>gi|393763994|ref|ZP_10352607.1| DNA polymerase III subunit epsilon [Alishewanella agri BL06]
gi|392605308|gb|EIW88206.1| DNA polymerase III subunit epsilon [Alishewanella agri BL06]
Length = 749
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 15/166 (9%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
DVETT R ++E GA+ V + E L +STL+ P I S R GI+
Sbjct: 587 LDVETTGGKAGTDR--VIEIGAVKV--QAGEVLDTFSTLLNPG--RTIPSFISRLTGISN 640
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA--EIGRPAPEPKGTIDS 130
V +PTF DIA + D L G ++ HN +FD IR FA +I P+ ++
Sbjct: 641 AMVADAPTFTDIATKLADFLQGAVFVAHNA-KFDYGFIRAEFARCDITFDMPQLCTVVN- 698
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
+R+ + L F + HR+L D E+LK
Sbjct: 699 ----MRRYYPGLASYSLGKLCEEFEINLNNHHRALADATATAELLK 740
>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
Length = 1473
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 31/187 (16%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP---ADPELISSLSVR 66
+ FD+ETT + R I+E A+ V + + STLV P A P + +L+
Sbjct: 295 VVVFDLETTGLNK--DRNRIIEIAAVNVSDPTHQPM---STLVNPGRFAVPPPVVALT-- 347
Query: 67 CNGITPDAVVSSPTF------ADIADTVFDILHGR------IWAGHNILRFDCARIREAF 114
GIT +A+VS+P A++ D R + A HN +FD ++ +
Sbjct: 348 --GIT-NAMVSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEY 404
Query: 115 AEIGRPAPEPKGTIDSLALLTQRFGRRA---GDMKMASLATYFGL---GQQTHRSLDDVR 168
+GR PE +D+L L + + A G K+ SLA +FG+ G HR+ D R
Sbjct: 405 RRLGRELPEDWRFVDTLPLARKTLAKEAVPGGSYKLESLAAHFGVDTAGASAHRAEADAR 464
Query: 169 MNLEVLK 175
M +VL+
Sbjct: 465 MLGDVLQ 471
>gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152]
gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152]
Length = 598
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT + G AI E GA+ V + E L ++TLV P I V+ GIT
Sbjct: 31 DLETTGTSPEGD--AITEIGAVKV--RGGEVLGEFATLVNPG--RAIPPAVVQVTGITTA 84
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V ++P + + G + HN RFD A +R A A P P D+ L
Sbjct: 85 LVYAAPRIEAVLPGFLEFAAGAVLVAHNA-RFDTAFLRAAAARCALPWP------DAPVL 137
Query: 134 LTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
T + RR A +++ASLA G Q THR+LDD R ++VL
Sbjct: 138 CTVKLARRVLGRDEAPSVRLASLARLLGASTQPTHRALDDARATVDVL 185
>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
2782]
gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
2782]
Length = 1433
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
+ FD+ETT P Q I E GA+ V ++ + +S V P I S V+
Sbjct: 421 DFVVFDIETT-GLNPHQD-KITEIGAVKVRNGQI--VDRFSAFVNPGVS--IPSFIVKLT 474
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT D V +P + + + + G + HN FD I++ +G P I
Sbjct: 475 GITDDMVKDAPPVEQVLNEFMEFIQGSVLVAHN-ANFDVGFIKQNAKLMGEKVKNP--YI 531
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVL 181
D+L L + F G K+ +A + + + HR++DD ++ +C +L
Sbjct: 532 DTLELCRKMFP-ELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFMHCINIL 584
>gi|433642377|ref|YP_007288136.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
gi|432158925|emb|CCK56227.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
Length = 645
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQHS--IPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A + +A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVHLAALARLFAVASNPTHRALDDARATVDVL 207
>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 658
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 13/167 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVET+ +R +L + V P + +STL+ P DP V +G
Sbjct: 21 ALVDVETSGLV--ARRDRVLSVAVVTVGPDG-AQTGEFSTLLDPGCDPG-----PVHVHG 72
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +P F ++A + +L GR+ HN +FD + FA G P + +
Sbjct: 73 LTAERLHGAPAFEEVAQRISQMLEGRVLVAHNA-QFDYDFLAHEFARAGVSLPVAR-RLC 130
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
+LA L +R D+++ +LA ++G+ Q + H +LDD R+ VL+
Sbjct: 131 TLA-LNRRVDPPTQDLRLGTLAAHYGVPQLRAHDALDDTRVLAGVLR 176
>gi|397171166|ref|ZP_10494575.1| DNA polymerase III, epsilon subunit [Alishewanella aestuarii B11]
gi|396087065|gb|EJI84666.1| DNA polymerase III, epsilon subunit [Alishewanella aestuarii B11]
Length = 749
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
DVETT R ++E GA+ V + E L +STL+ P I S R GI+
Sbjct: 587 LDVETTGGKAGTDR--VIEIGAVKV--QAGEVLDTFSTLLNPG--RTIPSFISRLTGISN 640
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA 115
V +P FADIAD + + L G ++ HN +FD IR FA
Sbjct: 641 AMVADAPIFADIADKLAEFLRGAVFVAHNA-KFDYGFIRSEFA 682
>gi|409357245|ref|ZP_11235630.1| hypothetical protein Dali7_05321 [Dietzia alimentaria 72]
Length = 544
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 27/237 (11%)
Query: 8 SEIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLE-ELHNYSTLVRPADPELISSLS 64
SE+ F D+ETT T PG R I E GA+ V ++ EL + ++ D L + +S
Sbjct: 34 SEVTFVVVDLETT-GTSPG-RDEITEIGAVRVRGGEVRAELSTFVSI----DGSLPAHIS 87
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R GI +V++P+ ++ T + + HN RFD +R A G P P+P
Sbjct: 88 -RLTGIESGDLVNAPSLGEVMATFLEFSRNSVLVAHNA-RFDLGFLRAAAIATGHPWPDP 145
Query: 125 KGTIDSLALLTQRF--GRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVL 181
+ ++ +LAL + G G K+ LA + G + HR+L D R ++VL + +
Sbjct: 146 Q-SVCTLALARRVLHQGETRGH-KLGVLAAHLGATVEPNHRALQDARATVDVLHALISRV 203
Query: 182 --FLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNAS 236
S+L ++ + +SP+ RS + +L+T + F +AS +
Sbjct: 204 GDCGVSTLSELRAYDGRLSPDVRRRS---------ALTDSLTTGPGVYVFRDASGVA 251
>gi|238569519|ref|XP_002386676.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553]
gi|215439222|gb|EEB87606.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553]
Length = 172
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 52 VRPAD------PELISS--LSVRCNGITPDAVVSS-PTFADIADTVFDILHGRIWAGHNI 102
+RPAD PE I S ++++ +GI +V+ PTF+ A+ + L G I G+NI
Sbjct: 4 IRPADGSIYLNPEGIPSHPMALQLHGIQDAELVAPLPTFSAHAEQLRSFLAGSIMTGYNI 63
Query: 103 LRFDCARIREAFAEIG---RPAPEPKGTIDSLALLTQRF----GRRAGDMKMASLATYFG 155
+FD A + F G PA E GTID+LAL +RF +R G + A L G
Sbjct: 64 TKFDLAFLTAEFHRCGITWSPAGEGIGTIDTLALY-RRFRPQEYKRGGKLFSAYLHFVGG 122
Query: 156 LGQQTHRSLDDVRMNLEVL 174
Q H + D L +L
Sbjct: 123 WQTQAHNAEADAFTALRLL 141
>gi|381182226|ref|ZP_09891043.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeriaceae bacterium TTU M1-001]
gi|380317871|gb|EIA21173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeriaceae bacterium TTU M1-001]
Length = 932
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
I++F A +V K++ E +ST + P P + ITPD + +P F D+A+T+
Sbjct: 26 IIQFAATIVEGKQIVE--TFSTFINPLKP--VPPFIQELTSITPDDLKDAPLFEDVAETI 81
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMA 148
+L I+ HN+ FD +++ +G P+ K ID++ L + K+
Sbjct: 82 LALLDNTIFVAHNV-HFDWTFLQKEMRRVGLSIPKMK-LIDTVE-LARILYPSVDSYKLQ 138
Query: 149 SLATYFGLGQQT-HRSLDDVRMNLEVLKYCATVL 181
LA FG + H++ D + E+ C L
Sbjct: 139 DLADEFGFIHENPHQADSDALVTAELFIKCVEKL 172
>gi|94312850|ref|YP_586059.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
CH34]
gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
CH34]
Length = 530
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 42/201 (20%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRC 67
I F D+ETT QR I E G + V P ++E + TLV P + P + L+
Sbjct: 35 IVFVDLETTGAD--AQRDRITEIGVVEVGPDGIQE---WDTLVDPLTSIPPFVQGLT--- 86
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT + V PTFA IA+ + + L GR++ HN RFD ++ F G T
Sbjct: 87 -GITDEMVRGQPTFALIAEALAEKLQGRLFVAHNA-RFDYGFLKNEFRRAG-------VT 137
Query: 128 IDSLALLTQRFGR-------RAGDMKMASLATYFGLG-QQTHRSLDDVRM---------- 169
+ L T R R R G + +L FGL + HR+L D +
Sbjct: 138 FRADVLCTLRLSRSLFPSVERHG---LDALIARFGLTPKGRHRALADAELLWQFWQKIHE 194
Query: 170 --NLEVLKYCATVLFLESSLP 188
++++++ T L +SLP
Sbjct: 195 IYSVDLVESAVTSLVKHASLP 215
>gi|300715435|ref|YP_003740238.1| DNA polymerase III subunit epsilon [Erwinia billingiae Eb661]
gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
Length = 244
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLVRP---ADPELISSLSVR 66
D ETT G + I+E GA+ V ++L +NY ++P DPE
Sbjct: 12 LDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTG-NNYHVYLKPDRLVDPEAFG----- 65
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
+GI + + PTFADIAD + + G HN FD + FA++GR P+ +
Sbjct: 66 VHGIADEFLADKPTFADIADGFLEYIDGAELVIHNA-SFDIGFMDYEFAKLGRNIPKTET 124
Query: 127 ---TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
DSLA+ + F G+R + +L + + + T R+L ++ E+L
Sbjct: 125 FCRITDSLAMARKMFPGKRN---SLDALCSRYEI-DNTKRTLHGALLDSEIL 172
>gi|347755338|ref|YP_004862902.1| DNA polymerase III subunit epsilon family exonuclease [Candidatus
Chloracidobacterium thermophilum B]
gi|347587856|gb|AEP12386.1| exonuclease, DNA polymerase III, epsilon subunit family [Candidatus
Chloracidobacterium thermophilum B]
Length = 1097
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 10/164 (6%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
S+ D+ETT + I+E AI + ++ +E YS LVRPA E IS+ + +
Sbjct: 702 SDYTIVDLETT--DKDAHHCDIVEVAAIRI--RQGQETEAYSQLVRPA-LEPISAEAEKT 756
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+ I+ + V +PTF IA + L + HN L FD +R F ++G P
Sbjct: 757 HHISAEMVADAPTFEAIAPALHAFLGQDLLVAHNGLAFDFKVLRRRFRDVGLKFDHP--F 814
Query: 128 IDSLALLTQRFGRRAG--DMKMASLATYFGLGQQT-HRSLDDVR 168
D+L Q + ++ LA G+ T HR+LDD R
Sbjct: 815 FDTLLFARQLYADHPSIKRCRLEDLAQAHGIEIGTAHRALDDTR 858
>gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
Length = 244
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNPRSGDR--LIEIGCVELLNRRLTGNNLHIYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++AD + D + G HN FD + FA +G P G
Sbjct: 58 GLTTEFLSDKPKFAEVADQIRDFVKGAELIIHNA-PFDLGFLDAEFARLGLPPFIEHCDG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+LA Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLAEAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913]
gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
Length = 718
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP--ELISSLSVRCNGIT 71
D+ETT + G R I E G + + K+ E + ++TL+ P P I+SL+ GI
Sbjct: 558 DIETTGGLKGGNR--ITEIGIVKI--KQGEIVDTWTTLINPERPIPRFITSLT----GIN 609
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V ++P F++IA + + L G I+ HN+ FD I++ IG PK
Sbjct: 610 DAMVSNAPIFSEIAAPLLNQLSGSIFVAHNV-NFDYGFIKKELERIGINFKMPK------ 662
Query: 132 ALLTQRFGRRA----GDMKMASLATYFGLG-QQTHRSLDD 166
L T R+A + +L+ +F L HR+LDD
Sbjct: 663 -LCTVVESRKAFKGLKSYSLGNLSAHFNLDLTNHHRALDD 701
>gi|387901919|ref|YP_006332258.1| DNA polymerase III subunit epsilon [Burkholderia sp. KJ006]
gi|387576811|gb|AFJ85527.1| DNA polymerase III epsilon subunit [Burkholderia sp. KJ006]
Length = 244
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNPRSGDR--LIEIGCVELLNRRLTGNNLHIYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++AD + D + G HN FD + FA +G P G
Sbjct: 58 GLTTEFLSDKPKFAEVADQIRDFVKGAELIIHNA-PFDLGFLDAEFARLGLPPFIEHCDG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+LA Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLAEAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|375094186|ref|ZP_09740451.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora marina XMU15]
gi|374654919|gb|EHR49752.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora marina XMU15]
Length = 563
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P +D + D+ETT P R I E GA+ V + E L ++TLV P P I
Sbjct: 11 PLRD-TTFVIVDLETTGGA-PAAR-GITEIGAVKV--RGGETLGEFATLVDPGAP--IPP 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
V GIT V ++P + + G + HN FD +R A G P
Sbjct: 64 QVVALTGITSAMVSAAPRIERVLPAFLEFASGAVLVAHNA-GFDTTFLRAACQAHGYAWP 122
Query: 123 EPKGTIDSLALLTQRFGRRA------GDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
P + T R RR G ++++LAT G + THR+LDD R ++VL
Sbjct: 123 RPP------VVCTLRLARRVLAPEHTGGYRLSALATLLGARTKPTHRALDDARATVDVL 175
>gi|359446651|ref|ZP_09236302.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20439]
gi|358039457|dbj|GAA72551.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20439]
Length = 718
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP--ELISSLSVRCNGIT 71
D+ETT + G R I E G + + K+ E + ++TL+ P P I+SL+ GI
Sbjct: 558 DIETTGGLKGGNR--ITEIGIVKI--KQGEIVDTWTTLINPERPIPRFITSLT----GIN 609
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V ++P F++IA + + L G I+ HN+ FD I++ IG PK
Sbjct: 610 DAMVSNAPIFSEIAAPLLNQLSGSIFVAHNV-NFDYGFIKKELERIGINFKMPK------ 662
Query: 132 ALLTQRFGRRA----GDMKMASLATYFGLG-QQTHRSLDD 166
L T R+A + +L+ +F L HR+LDD
Sbjct: 663 -LCTVVESRKAFKGLKSYSLGNLSAHFNLDLTNHHRALDD 701
>gi|359455674|ref|ZP_09244885.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20495]
gi|358047297|dbj|GAA81134.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20495]
Length = 719
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT + G R I E G + V K+ + +++LV P P I+SL+ GI+
Sbjct: 558 DIETTGGLKGGNR--ITEIGLVKVQYGKV--IDTWTSLVNPERHIPGFITSLT----GIS 609
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V ++P FADIA + D L G I+ HN+ FD I++ G PK
Sbjct: 610 DSMVYNAPVFADIAKPLLDKLAGSIFVAHNV-NFDYGFIKKECEVAGHFFKMPKMCT--- 665
Query: 132 ALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
+ +++ + + +L+++F L + HR+L D E+L
Sbjct: 666 VVESRKAFKGLKSYSLGNLSSHFNLNLTSHHRALADATATAELL 709
>gi|392418621|ref|YP_006455226.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium chubuense NBB4]
gi|390618397|gb|AFM19547.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium chubuense NBB4]
Length = 332
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 17/172 (9%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
S A DVET+ RPGQ I+ A+ + E YS L DP
Sbjct: 18 SGWAVVDVETS-GFRPGQA-RIVSIAALALSDDGNVEKSFYSLLDPGVDPG-----PTHV 70
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNI---LRFDCARIREAFAEIGRPAPEP 124
+G+T + + PTFAD+A + ++L GR HN+ F A AE+ P
Sbjct: 71 HGLTAEMLAGQPTFADVAGDLVEVLRGRTLVAHNVGFDYSFLAAEAEMVSAEL------P 124
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
T+ L +R ++K+ +LA ++G+ Q + H +LDD + ++LK
Sbjct: 125 VETVMCTVELGRRLDLGLENLKLETLAAHWGVTQMRPHDALDDAMVLAQILK 176
>gi|283783999|ref|YP_003363864.1| DNA polymerase III subunit epsilon [Citrobacter rodentium ICC168]
gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
Length = 243
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHIYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG- 126
+GI + ++ PTFAD+AD D + G HN FD + F+++ R P+
Sbjct: 66 HGIADEFLLDKPTFADVADEFLDYIRGAELVIHNA-SFDIGFMDYEFSKLNRDIPKTSSF 124
Query: 127 --TIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|365924679|ref|ZP_09447442.1| ATP-dependent helicase DinG [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420264843|ref|ZP_14767446.1| DinG family ATP-dependent helicase [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394429691|gb|EJF02103.1| DinG family ATP-dependent helicase [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 933
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT + G +L+F + + K++ ++ ++T++ P P I + GI
Sbjct: 8 AVVDIETTGTSMDGSN-RMLQFSCVFIKNKEI--VNTFNTMINPGMP--IPIEVQKLTGI 62
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
+ V +P F D+A T++ +L G ++ HNI FD + E F G P G ID+
Sbjct: 63 SDKNVRKAPFFEDMAGTIYSLLQGTVFIAHNI-NFDYRFLNEEFLRCGYPELNIHG-IDT 120
Query: 131 LAL 133
+ L
Sbjct: 121 VQL 123
>gi|410617632|ref|ZP_11328597.1| DNA polymerase III subunit epsilon [Glaciecola polaris LMG 21857]
gi|410162763|dbj|GAC32735.1| DNA polymerase III subunit epsilon [Glaciecola polaris LMG 21857]
Length = 733
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
DVETT +PG R I E GA+ V K+ + ++S+L+ P P I+ L+ GI+
Sbjct: 572 DVETTGGCKPGHR--ITEIGAVKVINGKV--VDSWSSLINPQRRVPHFITRLT----GIS 623
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
+ V +P F ++ DT+ + I+ HN+ FD + + + R PK
Sbjct: 624 NEMVEDAPLFCEVLDTLEAFMQNGIFVAHNV-NFDYGFFKLEYERLDRTFSMPK------ 676
Query: 132 ALLTQRFGRR----AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
L T R R+ + + L +GL HR+L D + E+L
Sbjct: 677 -LCTVREMRKYYPGSKSYALGKLTKEYGLSLDHHHRALCDAKAAAELL 723
>gi|419965028|ref|ZP_14480977.1| hypothetical protein WSS_A22918 [Rhodococcus opacus M213]
gi|414569424|gb|EKT80168.1| hypothetical protein WSS_A22918 [Rhodococcus opacus M213]
Length = 596
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P +D + D+ETT RPG+ AI E GA+ + + E + +TLV P I
Sbjct: 26 PLRD-TTFVVVDLETT-GARPGED-AITEIGAVKI--RGGEVIAEMATLVDPG--RSIPP 78
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
V GIT V+ +P + + G + HN FD ++ A + P
Sbjct: 79 HIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAP-FDTGFLKAAASATD--TP 135
Query: 123 EPKGTIDSLALLTQRFGRR--AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
PK T+ L +R R A +K++SLA F +G THR+LDD R ++VL
Sbjct: 136 WPKFTVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVDVL 190
>gi|385815809|ref|YP_005852200.1| DNA polymerase III subunit epsilon [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
Length = 286
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 24/164 (14%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT G++ I++ GA+ V + + + +ST V P E I+ GI+
Sbjct: 36 FDLETT-----GKK--IIQIGALKV--RDDQTVAKFSTYVNPL--EKINDYVSHLTGISN 84
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
++P ++ D + GHNIL FDC A+ G P PK +D+L
Sbjct: 85 YQTDAAPLIDEVMPDFLDFVGDDTLVGHNILSFDC----NVLADNGYPVANPK--LDTL- 137
Query: 133 LLTQRFGRRA------GDMKMASLATYFGLGQQTHRSLDDVRMN 170
LL + +R ++++++L Y+G+ +H ++ D N
Sbjct: 138 LLANSYKKRGLFADPISNVRLSTLKEYYGININSHIAISDCITN 181
>gi|392947199|ref|ZP_10312841.1| exonuclease, DNA polymerase III, epsilon subunit family [Frankia
sp. QA3]
gi|392290493|gb|EIV96517.1| exonuclease, DNA polymerase III, epsilon subunit family [Frankia
sp. QA3]
Length = 626
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 15/193 (7%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPA--DPELISSLSVRCNGITPDAVVSSPTFADIAD 86
I E GA+ V + E L STLVRP+ P ++S ++ GIT V ++P A++
Sbjct: 84 ITEIGAVRV--RGGEVLAEMSTLVRPSVGIPPMVSVIT----GITDAMVATAPAEAEVVP 137
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDM 145
T + G + HN FD +R A G P P + +D+L + + R A D
Sbjct: 138 TFLEFARGAVLVAHNAP-FDLGFLRAAAQRCGYPPPVWE-HLDTLRIARRVVSRDEAPDC 195
Query: 146 KMASLATYFGLGQQ-THRSLDDVRMNLEVLKYCATVLFLES--SLPDIFTVNSWVSPNAT 202
++ASLA F + HR+L D R ++VL L +L ++ ++ VSP A
Sbjct: 196 RLASLARLFRSSTEPCHRALADARATVDVLHGLFDRLGNAGVRTLEELHEYSARVSP-AQ 254
Query: 203 TRSRSNAKSSPEG 215
R R A P G
Sbjct: 255 RRKRYLADGLPTG 267
>gi|384102191|ref|ZP_10003209.1| hypothetical protein W59_12521 [Rhodococcus imtechensis RKJ300]
gi|383840381|gb|EID79697.1| hypothetical protein W59_12521 [Rhodococcus imtechensis RKJ300]
Length = 588
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P +D + D+ETT RPG+ AI E GA+ + + E + +TLV P I
Sbjct: 18 PLRD-TTFVVVDLETT-GARPGED-AITEIGAVKI--RGGEVIAEMATLVDPG--RSIPP 70
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
V GIT V+ +P + + G + HN FD ++ A + P
Sbjct: 71 HIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAP-FDTGFLKAAASATD--TP 127
Query: 123 EPKGTIDSLALLTQRFGRR--AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
PK T+ L +R R A +K++SLA F +G THR+LDD R ++VL
Sbjct: 128 WPKFTVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVDVL 182
>gi|424858434|ref|ZP_18282466.1| DNA-directed DNA polymerase [Rhodococcus opacus PD630]
gi|356662121|gb|EHI42420.1| DNA-directed DNA polymerase [Rhodococcus opacus PD630]
Length = 588
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P +D + D+ETT RPG+ AI E GA+ + + E + +TLV P I
Sbjct: 18 PLRD-TTFVVVDLETT-GARPGED-AITEIGAVKI--RGGEVIAEMATLVDPG--RSIPP 70
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
V GIT V+ +P + + G + HN FD ++ A + P
Sbjct: 71 HIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAP-FDTGFLKAAASATD--TP 127
Query: 123 EPKGTIDSLALLTQRFGRR--AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
PK T+ L +R R A +K++SLA F +G THR+LDD R ++VL
Sbjct: 128 WPKFTVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVDVL 182
>gi|386287858|ref|ZP_10065027.1| DNA polymerase III, epsilon subunit [gamma proteobacterium BDW918]
gi|385279121|gb|EIF43064.1| DNA polymerase III, epsilon subunit [gamma proteobacterium BDW918]
Length = 243
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D ETT PGQ I+E G + + +KL H Y + P D E + + ++ +GIT
Sbjct: 6 LDTETT-GLDPGQGHRIIEIGCVELVDRKLTGRH-YHQYINP-DRE-VEAGAIEVHGITN 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK---GTID 129
D + P FA IAD D + G HN FD + F + R P+ G +D
Sbjct: 62 DMLKDKPLFAQIADDFLDFIRGAELVIHNA-PFDIGFLDAEFKYLARNTPKIASICGVVD 120
Query: 130 SLALLTQRF-GRR 141
+L + Q+ G+R
Sbjct: 121 TLVMARQKHPGQR 133
>gi|335357366|ref|ZP_08549236.1| ATP-dependent helicase DinG [Lactobacillus animalis KCTC 3501]
Length = 932
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+E T P G I++F + K+ + +STL+ P P I + GI
Sbjct: 8 AVVDLEMTTPALDGTG-RIIQFSCTFIENGKISD--TFSTLIDPQCP--IPPEVQKLTGI 62
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
V +P F+D+ADT++ +L ++ HNI++ D + F G P E KG ID+
Sbjct: 63 KNSDVRKAPLFSDVADTIYALLQDTVFVAHNIMQ-DYRFLNAEFERAGYPELELKG-IDT 120
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
+ L Q ++ L Y G+ + H++ D + E+
Sbjct: 121 VQ-LAQILLPTQPSYRLVDLGNYLGIKHERPHQADSDTYVTAELF 164
>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
prausnitzii L2-6]
Length = 1417
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
E FD ETT PG + + E GA++V + E + + T V+P P I+S
Sbjct: 395 GEFCVFDTETT-GLDPGVEY-LTEIGAVIV--RNGEVVEEFDTFVKPGKP--ITSKITEL 448
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREA 113
GIT + V +P+ A+ D + GRI GHN FD +R A
Sbjct: 449 TGITNEMVADAPSEAEALKAFLDFVDGRILVGHNAHSFDIRFLRAA 494
>gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
MC2 155]
gi|399990486|ref|YP_006570837.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
MC2 155]
gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
MC2 155]
gi|399235049|gb|AFP42542.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
MC2 155]
Length = 337
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
S A DVETT RPGQ I+ A+ V E H+ S+L+ P +
Sbjct: 22 SGWAVVDVETT-GFRPGQA-RIVSVAALAVGDDGSVE-HSMSSLLNPG----VDPGPTHV 74
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+G+T + + P FAD+ D + ++L GR HN FD + + +G P
Sbjct: 75 HGLTAEMLEGQPCFADVVDELIEVLRGRTLVAHNA-GFDYSFLAAEAELVGAELP----- 128
Query: 128 IDSLALLTQRFGRR----AGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
ID+ A+ T RR ++++ +LA ++G+ Q + H +LDD + ++LK
Sbjct: 129 IDT-AMCTVELARRLELGTENLRLETLAAHWGVTQMKPHDALDDALVLAQILK 180
>gi|383188896|ref|YP_005199024.1| DNA polymerase III subunit epsilon [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|371587154|gb|AEX50884.1| DNA polymerase III, epsilon subunit [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 245
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 8 SEIAFFDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISS 62
+ I D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 8 NRIVVLDTETTGMNKLGVHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFG- 66
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
+GI+ + + PTFADIAD + + G HN FD + F +GR P
Sbjct: 67 ----VHGISDEFLADKPTFADIADDFIEYIRGGELVIHNA-TFDIGFMDYEFGMLGRDLP 121
Query: 123 EPK---GTIDSLALLTQRF-GRR 141
+ + DSLA+ + F G+R
Sbjct: 122 KTETFCKITDSLAMARKLFPGKR 144
>gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Exiguobacterium sp. AT1b]
gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp.
AT1b]
Length = 936
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
++EF A++V ++ E + YSTL+RP+ P I + I+ + V +PTF D+ +
Sbjct: 22 LIEFAAVVV--QEGEVIERYSTLIRPSRP--IPPFITQLTTISDEDVSDAPTFEDVIPDI 77
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMA 148
+ +L GR++ HN+ FD + E+ + G A + + ID++ L + A
Sbjct: 78 WKMLDGRVFVAHNV-AFDLTFLNESLEQAGYLAFQGRA-IDTVELARILYPTLESHALEA 135
Query: 149 SLATYFGLGQQTHRSLDDVRMNLEVL 174
T+ + HR+L D E+
Sbjct: 136 LSDTFDLVHTDAHRALSDAEATAELF 161
>gi|397730395|ref|ZP_10497154.1| hypothetical protein JVH1_1564 [Rhodococcus sp. JVH1]
gi|396933787|gb|EJJ00938.1| hypothetical protein JVH1_1564 [Rhodococcus sp. JVH1]
Length = 588
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P +D + D+ETT RPG+ AI E GA+ + + E + +TLV P I
Sbjct: 18 PLRD-TTFVVVDLETT-GARPGED-AITEIGAVKI--RGGEVIAEMATLVDPG--RSIPP 70
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
V GIT V+ +P + + G + HN FD ++ A + P
Sbjct: 71 HIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAP-FDTGFLKAAASATD--TP 127
Query: 123 EPKGTIDSLALLTQRFGRR--AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
PK T+ L +R R A +K++SLA F +G THR+LDD R ++VL
Sbjct: 128 WPKFTVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVDVL 182
>gi|407795567|ref|ZP_11142525.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Salimicrobium sp. MJ3]
gi|407019908|gb|EKE32622.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Salimicrobium sp. MJ3]
Length = 976
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 14/184 (7%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSV 65
S A D+ETT G+ I+E G +++ K+ E +ST + P P IS+L+
Sbjct: 31 STYAIIDLETT-GNSSGRGDKIIEIGIVVMESDKVTE--EFSTFIYPEAEIPPFISNLT- 86
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
GIT D V+ +P F++I + +L HNI FD I +A A++G K
Sbjct: 87 ---GITDDHVMDAPLFSEIVPDLKRLLRQDYVIAHNI-DFDLTFINDALAQLGEDQISAK 142
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
ID++ L + +G + Q HR++ D R+ E+ K +
Sbjct: 143 -VIDTVELSRVLMPKASGHKLSELSESLELSHDQPHRAISDARVTAELWKVLQAKM---K 198
Query: 186 SLPD 189
SLP+
Sbjct: 199 SLPE 202
>gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1]
gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
Length = 588
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P +D + D+ETT RPG+ AI E GA+ + + E + +TLV P I
Sbjct: 18 PLRD-TTFVVVDLETT-GARPGED-AITEIGAVKI--RGGEVIAEMATLVDPG--RSIPP 70
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
V GIT V+ +P + + G + HN FD ++ A + P
Sbjct: 71 HIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAP-FDTGFLKAAASATD--TP 127
Query: 123 EPKGTIDSLALLTQRFGRR--AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
PK T+ L +R R A +K++SLA F +G THR+LDD R ++VL
Sbjct: 128 WPKFTVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVDVL 182
>gi|395773391|ref|ZP_10453906.1| DNA polymerase III subunit epsilon [Streptomyces acidiscabies
84-104]
Length = 329
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + + A+ + E ++ TLV P DP V +G
Sbjct: 24 AVVDVETTGLARDDR----IVSAAVYRLDARGEVEDHWYTLVNPERDPG-----PVWIHG 74
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T D + +P FA++A+ L GR+ HN + FD I +A + AP +
Sbjct: 75 LTSDVLEGAPLFAEVAEEFSRRLDGRVLVAHNAV-FDWQMIAREYARAEQQAPVRQRLC- 132
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
+L++ G + K+ +LA +FG+ QQ H +LDD R+ E +
Sbjct: 133 -TIVLSKELGLPLPNHKLETLAAHFGVVQQRAHHALDDARVLAEAFR 178
>gi|418474225|ref|ZP_13043738.1| DNA polymerase III subunit epsilon [Streptomyces coelicoflavus
ZG0656]
gi|371545182|gb|EHN73829.1| DNA polymerase III subunit epsilon [Streptomyces coelicoflavus
ZG0656]
Length = 330
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELIS 61
PT A DVETT R + + A+ + E ++ TLV P DP
Sbjct: 16 PTAYPQGYAVVDVETTGLARDDRIIS----AAVYRLDARGEVEDHWYTLVNPQRDPG--- 68
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
V +G+T D + +P F D+A+ L GR+ HN + FD I +A R A
Sbjct: 69 --PVWIHGLTNDVLRDAPLFPDVAEEFAARLDGRVLVAHNAV-FDWQMIAREYARAEREA 125
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
P + + ++A L++ + K+ SLA +FG+ QQ H +LDD R+ E +
Sbjct: 126 PV-RQRLCTIA-LSKALDLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFR 178
>gi|308049181|ref|YP_003912747.1| DNA polymerase III subunit epsilon [Ferrimonas balearica DSM 9799]
gi|307631371|gb|ADN75673.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799]
Length = 240
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 21/174 (12%)
Query: 13 FDVETTV------PTRPGQRFAILEFGAILVCPKK--LEELHNYSTLVRPADPELISSLS 64
FD ETT P G + ++E G + + +K H Y RP D E +
Sbjct: 12 FDTETTGMNQGAGPHYLGHK--LIEIGCVELINRKPTGRTYHVYIQPDRPVDEE-----A 64
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PAP 122
++ +GIT + +V P F +IA+ F+ + G HN FD I F +GR
Sbjct: 65 IQVHGITDEFLVGKPRFGEIAEEFFEFIRGAELIAHNA-NFDIGFIDYEFEMLGRFGKLE 123
Query: 123 EPKGTIDSLALLTQRFGRRA--GDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+ +D+L L ++ R G++ + +L ++G+ +HR+L ++ E+L
Sbjct: 124 DHCSLVDTLQLAREKKNRGEIQGNLNLDALCRFYGI-DNSHRTLHGALLDAEIL 176
>gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 631
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 13/167 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVET+ +R +L I + P E+ +STL+ P DP V +G
Sbjct: 21 ALVDVETS--GLMARRDRVLSVAVITIGPDG-EQTGEFSTLLNPGCDPG-----PVEVHG 72
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +PTF +A + +L GR+ HN +FD + FA P + +
Sbjct: 73 LTVERLQGAPTFDQVAGRIGAMLQGRVLVAHNA-QFDYDFLAHEFARARMWLPVSQ-RLC 130
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
+LA L ++ DMK+ +LA ++G+ Q+ H +LDD R+ +L+
Sbjct: 131 TLA-LNRQVDPPTDDMKLGTLAAHYGVSRQRAHDALDDTRVLAGILR 176
>gi|333983689|ref|YP_004512899.1| DNA polymerase III subunit epsilon [Methylomonas methanica MC09]
gi|333807730|gb|AEG00400.1| DNA polymerase III, epsilon subunit [Methylomonas methanica MC09]
Length = 466
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
+AF D+ETT + R I E G +LV ++ E +S LV P P I ++
Sbjct: 6 LAFVDLETTGASATQDR--ITEIGIVLVDDGEVRE---WSQLVYPQMRIPLFIEQMT--- 57
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GI+ V +P FA+IA V +L GR++ HN RFD ++ F IG P
Sbjct: 58 -GISNSMVEQAPPFAEIAQQVEQLLQGRLFIAHNA-RFDYGFLKNEFKRIGMP 108
>gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 241
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPA 55
M T R I FD ETT G + I+E GA+ + +KL H Y RP
Sbjct: 1 MKATNQR--IIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPDRPI 58
Query: 56 DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA 115
DPE ++ +GIT + +V P++A+I D + G HN FD + F
Sbjct: 59 DPE-----AIDVHGITDEFLVGKPSYAEIHQEFIDFIDGAELVAHNA-SFDIGFMDYEFQ 112
Query: 116 EIGRPAPEPKG---TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNL 171
+G + + D+L + + F G+R + L + +G+ +HR+L ++
Sbjct: 113 LMGSDLKKTEDICKVTDTLEMAKRLFPGKRN---NLDILCSRYGI-DNSHRTLHGALLDA 168
Query: 172 EVL 174
E+L
Sbjct: 169 EIL 171
>gi|441216915|ref|ZP_20977195.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
smegmatis MKD8]
gi|440624235|gb|ELQ86101.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
smegmatis MKD8]
Length = 326
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
S A DVETT RPGQ I+ A+ V E H+ S+L+ P +
Sbjct: 11 SGWAVVDVETT-GFRPGQA-RIVSVAALAVGDDGSVE-HSMSSLLNPG----VDPGPTHV 63
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+G+T + + P FAD+ D + ++L GR HN FD + + +G P
Sbjct: 64 HGLTAEMLEGQPCFADVVDELIEVLRGRTLVAHNA-GFDYSFLAAEAELVGAELP----- 117
Query: 128 IDSLALLTQRFGRR----AGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
ID+ A+ T RR ++++ +LA ++G+ Q + H +LDD + ++LK
Sbjct: 118 IDT-AMCTVELARRLELGTENLRLETLAAHWGVTQMKPHDALDDALVLAQILK 169
>gi|354617355|ref|ZP_09034792.1| DNA polymerase III, epsilon subunit, partial [Saccharomonospora
paurometabolica YIM 90007]
gi|353218291|gb|EHB83093.1| DNA polymerase III, epsilon subunit, partial [Saccharomonospora
paurometabolica YIM 90007]
Length = 508
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGIT 71
D+ETT PG R I E GA+ V + E L ++TLV P P I V GIT
Sbjct: 19 IVDLETTGGP-PGAR-GITEVGAVKV--RGGEVLAEFATLVDPGVP--IPPQIVELTGIT 72
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V +P ++ + G + HN FD + +R A ++G P P T+ +L
Sbjct: 73 SAMVADAPPIDEVLPAFLEFASGCVLVAHNA-GFDVSFLRTACHDLGYRWPRPT-TVCTL 130
Query: 132 ALLTQRFGRR-AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK---------YCATV 180
L + R ++ +LA FG THR+LDD R ++VL A+V
Sbjct: 131 KLARRVLSREETRSHRLGALARLFGAETTPTHRALDDARATVDVLHGLFERLGPLGVASV 190
Query: 181 LFLESSLPDI 190
L LPD+
Sbjct: 191 EELLDYLPDV 200
>gi|358410584|gb|AEU09982.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
piscicida]
Length = 241
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPA 55
M T +R I FD ETT G + I+E GA+ + +KL H Y R
Sbjct: 1 MKATNER--IIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPDRAI 58
Query: 56 DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA 115
DPE ++ +GIT + +V PT+A+I D + G HN FD + F
Sbjct: 59 DPE-----AIEVHGITDEFLVGKPTYAEIHQEFMDFIQGAELVAHNA-PFDIGFMDYEFR 112
Query: 116 EIG---RPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNL 171
++G E D+L + + F G+R + L + +G+ +HR+L ++
Sbjct: 113 KLGLKDLKTDEMCKVTDTLDMAKRLFPGKRN---NLDILCSRYGI-DNSHRTLHGALLDA 168
Query: 172 EVL 174
E+L
Sbjct: 169 EIL 171
>gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type
[Ruminococcaceae bacterium D16]
gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type
[Ruminococcaceae bacterium D16]
Length = 1396
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 3 PTQDRS-EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELIS 61
P QD S EI FD+ETT + +R I+E GA ++ K E ++T V P ++S
Sbjct: 363 PCQDFSQEIVCFDIETTGLDK--RREVIIEIGAAVL--KNGEVTETFNTFVAPG--RILS 416
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
+ GIT + +V +P+ + D + R A HN FD I + G P
Sbjct: 417 PEIIHLTGITDEMLVGAPSQEEALRAFLDFVGDRPLAAHNA-EFDMGFISTGCRKYGIPF 475
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGL-GQQTHRSLDD 166
P +IDSL +L Q G K+ +A Y L HR+ DD
Sbjct: 476 TNP--SIDSL-ILAQNLLPELGKYKLDIVAEYLQLPAFNHHRASDD 518
>gi|440750746|ref|ZP_20929986.1| DNA polymerase III epsilon subunit [Mariniradius saccharolyticus
AK6]
gi|436480665|gb|ELP36885.1| DNA polymerase III epsilon subunit [Mariniradius saccharolyticus
AK6]
Length = 453
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 72/167 (43%), Gaps = 29/167 (17%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
A D+ETT PG I E AIL ++ + Y TL+ P P I G
Sbjct: 3 FAIVDIETT-GGNPGLG-GITEIAAILHDGSRV--VDTYHTLINPQRP--IPGFITGLTG 56
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
I V +PTFA+IAD +++ L ++ HN+ FD + IR AF +GR
Sbjct: 57 IDQKMVEHAPTFAEIADELWEFLEDAVFVAHNV-NFDFSFIRSAFEALGR-------NFQ 108
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLG----------QQTHRSLDD 166
+ L T R R+ L +Y GLG + HR+L D
Sbjct: 109 ARKLCTVRLSRKV----FPGLRSY-GLGRICSHLHIEIENRHRALGD 150
>gi|432343781|ref|ZP_19592923.1| hypothetical protein Rwratislav_41655 [Rhodococcus wratislaviensis
IFP 2016]
gi|430771191|gb|ELB87077.1| hypothetical protein Rwratislav_41655 [Rhodococcus wratislaviensis
IFP 2016]
Length = 679
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P +D + D+ETT RPG+ AI E GA+ + + E + +TLV P I
Sbjct: 18 PLRD-TTFVVVDLETT-GARPGED-AITEIGAVKI--RGGEVIAEMATLVDPG--RSIPP 70
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
V GIT V+ +P + + G + HN FD ++ A + P
Sbjct: 71 HIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAP-FDTGFLKAAASATD--TP 127
Query: 123 EPKGTIDSLALLTQRFGRR--AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
PK T+ L +R R A +K++SLA F +G THR+LDD R ++VL
Sbjct: 128 WPKFTVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVDVL 182
>gi|348031040|ref|YP_004873726.1| DNA polymerase III subunit epsilon [Glaciecola nitratireducens
FR1064]
gi|347948383|gb|AEP31733.1| DNA polymerase III, epsilon subunit [Glaciecola nitratireducens
FR1064]
Length = 713
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCN 68
A D+ETT Q I E G + + E + + +L+ P P I+SL+
Sbjct: 545 AVIDIETT--GGRAQHHRITEVGIVKMIGG--EVVAEWQSLINPERRIPHNITSLT---- 596
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI D V +P FA++AD + + G ++ HN+ FD I+E F + R PK
Sbjct: 597 GIDNDMVADAPLFAEVADDIDEFTDGCVFVAHNV-NFDYGFIKEEFNRLERHYRRPK--- 652
Query: 129 DSLALLTQRFGRRA----GDMKMASLATYFGLG-QQTHRSLDD 166
L T R R+ +A+L +FG+ Q+ HR++ D
Sbjct: 653 ----LCTVREMRKHYKGLSSYSLANLTKHFGIDMQRHHRAMSD 691
>gi|387126543|ref|YP_006295148.1| DNA polymerase III subunit epsilon [Methylophaga sp. JAM1]
gi|386273605|gb|AFI83503.1| DNA polymerase III epsilon subunit [Methylophaga sp. JAM1]
Length = 482
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 11/135 (8%)
Query: 44 ELHNYSTLVRP--ADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHN 101
E + TL+ P + P IS L+ GIT V + P+FADIA+ + L +++ H+
Sbjct: 41 ETDRWQTLINPGVSIPPWISKLT----GITDPMVANQPSFADIAEELQQRLADKVFVAHH 96
Query: 102 ILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQT 160
+ RFD IRE+F IG ++ L RR G + ++ GL Q
Sbjct: 97 V-RFDYGFIRESFRRIGITFSAKTLCSVKISRLLYPEQRRHG---IDAIVARLGLNINQR 152
Query: 161 HRSLDDVRMNLEVLK 175
HR++DD ++ LE+ +
Sbjct: 153 HRAMDDAQVILELFQ 167
>gi|397690897|ref|YP_006528151.1| DNA polymerase III epsilon subunit [Melioribacter roseus P3M]
gi|395812389|gb|AFN75138.1| DNA polymerase III epsilon subunit [Melioribacter roseus P3M]
Length = 549
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSL 63
D++E FD ETT + +R ++E G + + KK+ + YS+ + P P I+
Sbjct: 9 DKAEYCVFDFETTGVSARNER--VIEIGIVKIRNKKI--IDTYSSYINPGRQVPPFIT-- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
R GIT D V +P F D+ + + D + HN L+FD + ++ + G PE
Sbjct: 63 --RLTGITDDDVAQAPYFEDVYNDILDFFGDSVLVAHN-LKFDYSFLKYECLKTGLEMPE 119
>gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans
CB1190]
gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans
CB1190]
Length = 586
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 78/177 (44%), Gaps = 26/177 (14%)
Query: 9 EIAF--FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLS 64
E+ F D+ETT + +I E GA+ V + E L +TLV P P + +L+
Sbjct: 28 EVTFVVLDLETTGGS--SANHSITEIGAVKV--RGGEVLGELATLVDPGTGVPPGVVALT 83
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
GIT V +P A + T+ + + G + HN FD +R A R P P
Sbjct: 84 ----GITTAMVTGAPRLAQVLPTLLEFMGGAVLVAHNAP-FDAGFLRAACERHDRRWPRP 138
Query: 125 KGTIDSLALLTQRFGR------RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T R R A +++ +LA FG Q THR+L D R +EVL
Sbjct: 139 P------QLCTARLARAVLSRAEAPSVRLGALARLFGTATQPTHRALADARATVEVL 189
>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
DSM 40736]
gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
DSM 40736]
Length = 330
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 14/175 (8%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELIS 61
PT A DVETT R + + A+ + E ++ T+V P DP
Sbjct: 16 PTAYPKGYAVVDVETTGLARDDRIIS----AAVYRLDARGEVEDHWYTMVNPERDPG--- 68
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
V +G+T +A+ +P F DIA+ L GR+ HN + FD I +A R
Sbjct: 69 --PVWIHGLTSEALEGAPLFQDIAEEFTTRLEGRVLVAHNAV-FDWQMIAREYARAQREV 125
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
P + + ++A L++ G + K+ SLA ++G+ Q + H +LDD R+ E +
Sbjct: 126 PV-RQRLCTIA-LSKELGLPLPNHKLESLAAHYGVVQRRAHHALDDARVLAEAFQ 178
>gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 198
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+ F D+ETT P + I+E + VC +EE Y +LV P P I S + +
Sbjct: 18 LVFLDIETT-GLDPEKGANIVEIAMLKVC-GGIEE--RYESLVNPGLP--IPSECSKIHA 71
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
I D + +SP+F +IA VF + + HN FD + G P + ID
Sbjct: 72 IYDDMIKNSPSFDEIAGNVFSFIGHSVVVCHN-APFDLLFVYRELYLAGVPVKNIR-YID 129
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGL-GQQTHRSLDDVRMNLEVLKYCATVLF 182
+L L Q F + K+ ++A G+ + HR++ DV V KY ++
Sbjct: 130 TLKLARQYFSFDSN--KLGNIADAIGIEAELRHRAMADVLTMFSVAKYIFANMY 181
>gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
17616]
gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
17616]
gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
17616]
gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
17616]
Length = 244
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARSGDR--IIEIGCVELLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA+IA + D + G HN FD + FA +G P + G
Sbjct: 58 GLTTEFLSDKPKFAEIAHQILDFVKGAELIIHNA-PFDLGFLDAEFALLGLPPFSEHCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862]
Length = 940
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
+R A D+ETT T R I++ V KK+ ++ +STLV P E I +
Sbjct: 3 NRDIYAVVDLETTRTTSETGR--IIQIAVAFVQNKKI--INQFSTLVNPG--EQIPRNII 56
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
+ GIT + V +P F D+A T+ +L G I+ HN+ FD + F +G A
Sbjct: 57 QLTGITQNMVKGAPFFEDVAMTLHAMLQGTIFVAHNV-NFDLPFLNAEFERVGLTA 111
>gi|374321735|ref|YP_005074864.1| DNA polymerase III subunit epsilon [Paenibacillus terrae HPL-003]
gi|357200744|gb|AET58641.1| DNA polymerase III subunit epsilon [Paenibacillus terrae HPL-003]
Length = 198
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 48 YSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDC 107
Y L+ P P + +++ +GITP V P F ++ T+ ++ G I HN + FD
Sbjct: 35 YEWLIDPQQP--FNRMNIAIHGITPSMVEKQPIFGELWTTIEPLVSGEIIIAHNAV-FDI 91
Query: 108 ARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQTHRS 163
+ +R + PE + L T R G++ K+ ++ +FG+ H +
Sbjct: 92 SVLRYCLDAAEKSYPEIQ------YLCTYRIGKKLLQELSSHKLNIISNHFGIRLNHHNA 145
Query: 164 LDDVR------MNL-EVLKYCATVLFLES 185
LDD R +NL E K C +LF +S
Sbjct: 146 LDDARACAQIMLNLMEQQKECDPLLFAKS 174
>gi|283834499|ref|ZP_06354240.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
29220]
gi|291070049|gb|EFE08158.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
29220]
Length = 245
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + FA++ R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFLDYIRGAELVIHNA-SFDIGFMDYEFAKLKRDIPKTNEF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKITDSLALARKMFPGKR 145
>gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 241
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPA 55
M T +R I FD ETT G + I+E GA+ + +KL H Y R
Sbjct: 1 MKATNER--IIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPDRAI 58
Query: 56 DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA 115
DPE ++ +GIT + +V PT+A+I D + G HN FD + F
Sbjct: 59 DPE-----AIEVHGITDEFLVGKPTYAEIHQEFMDFIQGAELVAHN-APFDIGFMDYEFR 112
Query: 116 EIG---RPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNL 171
++G E D+L + + F G+R + L + +G+ +HR+L ++
Sbjct: 113 KLGLKDLKTDEMCKVTDTLDMAKRLFPGKRN---NLDILCSRYGI-DNSHRTLHGALLDA 168
Query: 172 EVL 174
E+L
Sbjct: 169 EIL 171
>gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
CGD2M]
gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
gi|421470819|ref|ZP_15919169.1| DNA polymerase III, epsilon subunit, partial [Burkholderia
multivorans ATCC BAA-247]
gi|421480882|ref|ZP_15928475.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CF2]
gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
CGD2M]
gi|400220323|gb|EJO50869.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CF2]
gi|400226888|gb|EJO56925.1| DNA polymerase III, epsilon subunit, partial [Burkholderia
multivorans ATCC BAA-247]
Length = 244
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--IIEIGCVELLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA+IA + D + G HN FD + FA +G P + G
Sbjct: 58 GLTTEFLSDKPKFAEIAHQILDFVKGAELIIHNA-PFDLGFLDAEFALLGLPPFSEHCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|377821317|ref|YP_004977688.1| DNA polymerase III subunit epsilon [Burkholderia sp. YI23]
gi|357936152|gb|AET89711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. YI23]
Length = 245
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--IIEIGCVELVNRRLTGNNLHLYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA+IA + D + HN FD + FA++G P A G
Sbjct: 58 GLTTEFLSDKPKFAEIAAQLRDFIADAELIIHNA-PFDVGFLDMEFAQLGLPKVAQTCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
IDSLA Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDSLAQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
Length = 330
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + + A+ + E ++ TLV P DP V +G
Sbjct: 26 AVVDVETTGLARDDRIIS----AAVYRLDARGEVEDHWYTLVNPQRDPG-----PVWIHG 76
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T D + +P F D+A+ L GR+ HN + FD I +A R AP + +
Sbjct: 77 LTSDVLRDAPLFPDVAEEFAARLDGRVLVAHNAV-FDWQMIAREYARAEREAPV-RQRLC 134
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
++A L++ + K+ SLA +FG+ QQ H +LDD R+ E +
Sbjct: 135 TIA-LSKALDLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFR 180
>gi|295677334|ref|YP_003605858.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1002]
gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
Length = 382
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT + R I E G + V P + +S+LV P P I S + G
Sbjct: 15 IVFVDLETTGGSTSEHR--ITEVGVVEVGPAGVS---RWSSLVDPQQP--IPSFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT D V +PTF IA +F+ L+G+++ HN FD +R F G
Sbjct: 68 ITNDMVRGAPTFESIAPALFERLNGKLFVAHNA-SFDRGFLRSEFRRAG 115
>gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Carnobacterium sp. 17-4]
gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Carnobacterium sp. 17-4]
Length = 940
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 1 MGPTQDRSEIAFFDVETTV-PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADP 57
M + A D+ETT G R +++FG +L+ K+ +H ++T V P + P
Sbjct: 1 MNKLNHKDTYAVVDIETTGGNVTSGDR--MIQFGCVLIEDDKI--VHRFATTVNPLTSIP 56
Query: 58 ELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI 117
+ I L+ G++ +V +P F D+A T++++L I HNI +FD +
Sbjct: 57 KQIEHLT----GLSNKSVALAPYFEDVAATIYNLLEDCIIVAHNI-QFDYIFLSGELQRC 111
Query: 118 GRPAPEPKGTIDSLAL 133
G PA + KG ID++ L
Sbjct: 112 GMPALKNKG-IDTVEL 126
>gi|341820012|emb|CCC56236.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
thailandensis fsh4-2]
Length = 970
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT T R I++ V K+ ++ +STL+ P E I V+ GI
Sbjct: 35 AVVDLETTRTTSESGR--IIQIAIAFVQNNKI--INQFSTLINPH--ESIPRNVVQLTGI 88
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
+ V +P F D+A+++ +L G I+ HN+ FD + F +G P + ID+
Sbjct: 89 DSEMVTGAPAFEDVAESIHTMLSGTIFVAHNV-NFDLPFLNAEFQRVGMPVLDVIA-IDT 146
Query: 131 LALLTQRFGRRAGDMKMASLATYFGL 156
+ L+Q A ++ L +Y L
Sbjct: 147 VT-LSQIVWPTAPGFRLVDLTSYLSL 171
>gi|410645279|ref|ZP_11355746.1| DNA polymerase III subunit epsilon [Glaciecola agarilytica NO2]
gi|410135209|dbj|GAC04145.1| DNA polymerase III subunit epsilon [Glaciecola agarilytica NO2]
Length = 778
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
DVETT +PG R I E GA+ V ++ + ++S+L+ P P I+ L+ GI+
Sbjct: 617 DVETTGGCKPGHR--ITEIGAVKVINGRV--VDSWSSLINPERRVPHFITRLT----GIS 668
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
D V +P F ++ D + + I+ HN+ FD + +A + R PK
Sbjct: 669 NDMVEDAPLFCEVIDDLERFMQDCIFVAHNV-NFDYGFFKLEYARLERSFSMPK------ 721
Query: 132 ALLTQRFGRR----AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
L T R R+ + + +L +GL HR+L D + E+L
Sbjct: 722 -LCTVREMRKYYPGSKSYSLGNLTKEYGLSLDNHHRALCDAQAAAELL 768
>gi|433462953|ref|ZP_20420521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Halobacillus sp. BAB-2008]
gi|432188090|gb|ELK45308.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Halobacillus sp. BAB-2008]
Length = 932
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 22/176 (12%)
Query: 10 IAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
A D+ETT G R I+E G ++V + L +S+LV P P +SSL+
Sbjct: 4 FAIVDLETTGNAASKGDR--IIEIGVVVVTEEG-RTLEEFSSLVYPEREIPPFVSSLT-- 58
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
GI + V+ +P F++IA+ + + HNI FD + + F G P P
Sbjct: 59 --GIKEEDVLEAPLFSEIAEDIHPLFDHAYIVAHNI-EFDLGFLNDEFKRCGLP-PLHNP 114
Query: 127 TIDSLALLTQRFGR----RAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLKYC 177
ID T F R + K+ LA GLG + HR+L D ++ ++L Y
Sbjct: 115 IID-----TVEFARLMLPTSPTFKLGQLAERLGLGHDRPHRALSDAQVTSDLLLYL 165
>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
[Streptomyces coelicolor A3(2)]
Length = 328
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + + A+ + E ++ TLV P DP V +G
Sbjct: 24 AVVDVETTGLARDDRIIS----AAVYRLDARGEVEDHWYTLVNPQRDPG-----PVWIHG 74
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T D + +P F D+A+ L GR+ HN + FD I +A R AP + +
Sbjct: 75 LTSDVLRDAPLFPDVAEEFAARLDGRVLVAHNAV-FDWQMIAREYARAEREAPV-RQRLC 132
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
++A L++ + K+ SLA +FG+ QQ H +LDD R+ E +
Sbjct: 133 TIA-LSKALDLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFR 178
>gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
Length = 244
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 26/191 (13%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ILE G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--ILELGCVELVNRRLTGNNLHFYINPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT- 127
G+T + + P FA+IAD D + G HN FD + FA +G P P T
Sbjct: 58 GLTTEFLSDKPKFAEIADQFRDFIQGADLIIHNA-PFDIGFLDAEFALLGLP---PVSTY 113
Query: 128 ----IDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATV 180
ID+LA Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 114 CGEIIDTLARAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMT 169
Query: 181 LFLESSLPDIF 191
ES + D+
Sbjct: 170 RGQESLVIDML 180
>gi|374366509|ref|ZP_09624588.1| DNA polymerase III, epsilon subunit [Cupriavidus basilensis OR16]
gi|373101979|gb|EHP43021.1| DNA polymerase III, epsilon subunit [Cupriavidus basilensis OR16]
Length = 532
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
I F D+ETT G R I E G + V P + E + TLV P P I L+
Sbjct: 33 IVFVDLETTGAD--GTRDRITEIGVVEVGPDGIVE---WDTLVDPGIGIPPFIQQLT--- 84
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GIT D V PTF +A T+ + L G+++ HN RFD ++ F +G
Sbjct: 85 -GITDDMVRGQPTFESLAQTLAEQLQGKLFVAHNA-RFDYGFLKNEFRRVG 133
>gi|296117576|ref|ZP_06836160.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
DSM 20306]
gi|295969307|gb|EFG82548.1| DNA polymerase III epsilon subunit [Corynebacterium ammoniagenes
DSM 20306]
Length = 467
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 17/188 (9%)
Query: 15 VETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSLSVRCNGITPD 73
V V T G +I + GA+ EE + L +P A + +++ +GIT D
Sbjct: 108 VAVDVETANGNWGSICQIGAVRFVAG--EETESKVWLCQPPAGIDHFDDINISIHGITAD 165
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V +PTFA+ A + + + HN +FD +R AF P PE SLAL
Sbjct: 166 DVKDAPTFAEAAGELLTFMRDDVLVAHNA-QFDATALRSAFLRTQTPVPE-MALACSLAL 223
Query: 134 LTQRFGRRA-----GDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLKYCA----TVLFL 183
R+ ++ + K+ ++A G Q H +LDD R ++ A +
Sbjct: 224 --ARYASKSKVLSVANHKLPTVAKAVSFGDFQHHDALDDARAAGHIISALAPAFENAIAG 281
Query: 184 ESSLPDIF 191
E S+ D+F
Sbjct: 282 EQSIRDVF 289
>gi|332306380|ref|YP_004434231.1| DNA polymerase III subunit epsilon [Glaciecola sp. 4H-3-7+YE-5]
gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola sp. 4H-3-7+YE-5]
Length = 788
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
DVETT +PG R I E GA+ V ++ + ++S+L+ P P I+ L+ GI+
Sbjct: 627 DVETTGGCKPGHR--ITEIGAVKVINGRV--VDSWSSLINPERRVPHFITRLT----GIS 678
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
D V +P F ++ D + + I+ HN+ FD + +A + R PK
Sbjct: 679 NDMVEEAPLFCEVIDDLECFMQDCIFVAHNV-NFDYGFFKLEYARLERSFSMPK------ 731
Query: 132 ALLTQRFGRR----AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
L T R R+ + + +L +GL HR+L D + E+L
Sbjct: 732 -LCTVREMRKYYPGSKSYSLGNLTKEYGLSLDNHHRALCDAQAAAELL 778
>gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
Length = 456
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E A D+ETT I E ++ +K+ + + +L+ P P I+ L+
Sbjct: 2 EFAIVDIETT--GGAASTCGITEIAILIHDGEKV--IEEFESLINPEQDIPTYITGLT-- 55
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
GI V +PTF +++D ++D+LHGR++ H++ FD +R F IGR K
Sbjct: 56 --GIDNSMVSDAPTFEELSDKLWDLLHGRVFVAHSV-NFDYGFVRACFNAIGREFKVDKL 112
Query: 127 TIDSLA------LLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVR 168
LA L + GR K+ LA HR++ D R
Sbjct: 113 CTVRLARKIIPGLSSYSLGRICETQKIPILA--------RHRAMGDAR 152
>gi|315504521|ref|YP_004083408.1| DNA polymerase III, subunit epsilon [Micromonospora sp. L5]
gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5]
Length = 584
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT G I E GA+ V + EEL +TLV P P I GIT
Sbjct: 36 DLETTGGAPDGG--GITEIGAVKV--RGGEELGVLATLVNPGVP--IPPFITVLTGITQA 89
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
++ +P + + + + + HN +D ++ A A+ G P P+ +D+ AL
Sbjct: 90 MLLPAPPIEQVLPSFLEFISDAVLVAHNA-PYDVGFLKAACAKHGYRWPNPR-VLDTAAL 147
Query: 134 LTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+ R + K+ +LA YF Q THR+LDD + ++VL
Sbjct: 148 ARRVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVL 190
>gi|401675734|ref|ZP_10807722.1| DNA polymerase III, epsilon subunit [Enterobacter sp. SST3]
gi|400217036|gb|EJO47934.1| DNA polymerase III, epsilon subunit [Enterobacter sp. SST3]
Length = 246
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD + + G HN FD + F+++ R P+
Sbjct: 69 HGIADEFLLDKPTFADVADEFLEYIRGAELVIHNA-SFDIGFMDYEFSKLNRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
protein) [Cupriavidus taiwanensis LMG 19424]
gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
protein) [Cupriavidus taiwanensis LMG 19424]
Length = 532
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 40/200 (20%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCN 68
I F D+ETT QR I E G + V P + E + TL+ DP + I R
Sbjct: 33 IVFVDLETTGAD--AQRDRITEIGVVEVGPDGIVE---WETLL---DPGMSIPPFIQRMT 84
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI+ D V PTF +A+++ + L GR++ HN RFD ++ AF G T
Sbjct: 85 GISDDMVRGQPTFESLAESLAERLQGRLFVAHNA-RFDYGFLKNAFRRAGV-------TF 136
Query: 129 DSLALLTQRFGR-------RAGDMKMASLATYFGLG-QQTHRSLDDVRM----------- 169
+ L T R R R G + +L FGL + HR+L D +
Sbjct: 137 RADVLCTVRLSRSLFPSVERHG---LDALIARFGLTPKGRHRALADAELLWQFWQKIHAT 193
Query: 170 -NLEVLKYCATVLFLESSLP 188
++E+++ L +SLP
Sbjct: 194 YSVELVEAAVRTLVRRASLP 213
>gi|383820044|ref|ZP_09975304.1| hypothetical protein MPHLEI_11974 [Mycobacterium phlei RIVM601174]
gi|383335864|gb|EID14285.1| hypothetical protein MPHLEI_11974 [Mycobacterium phlei RIVM601174]
Length = 620
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 32/196 (16%)
Query: 14 DVETTVPTRPGQRF-AILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGI 70
D+ETT G+R AI E GA+ V + E L +TLV P P I +L+ GI
Sbjct: 30 DLETTGGRASGERADAITEIGAVKV--RGGEVLGELATLVDPGRDIPPQIVALT----GI 83
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V +P + + G + HN FD +R A P P P
Sbjct: 84 TTAMVCDAPRIESVLPAFLEFSRGAVLVAHNA-GFDIGFLRAAAERCQLPWPRPP----- 137
Query: 131 LALLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL--------- 174
L T + RR A +++A LA FG THR+LDD R ++VL
Sbjct: 138 -VLCTVKLARRVLTRDEAPSVRLAELARLFGASTTPTHRALDDARATVDVLHGLIERVGN 196
Query: 175 KYCATVLFLESSLPDI 190
+ T+ L + LPD+
Sbjct: 197 QGVHTLRELRAYLPDV 212
>gi|431797912|ref|YP_007224816.1| DNA polymerase III subunit epsilon family exonuclease [Echinicola
vietnamensis DSM 17526]
gi|430788677|gb|AGA78806.1| exonuclease, DNA polymerase III, epsilon subunit family [Echinicola
vietnamensis DSM 17526]
Length = 457
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCN 68
A D+ETT G+R I E A+ ++ L ++ TL+ P P I+ L+
Sbjct: 4 AIVDIETTGGY--GKRHRITEVAAVAHNGSQI--LDSFQTLINPDCEIPGFITGLT---- 55
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI V +P F DIAD ++ L +I+ HN+ FD IR F IG+ PK
Sbjct: 56 GIDQSMVEGAPYFEDIADELYAFLEDKIFVAHNV-NFDYQFIRSEFERIGKSFDRPK--- 111
Query: 129 DSLALLTQRFGRR 141
L T R R+
Sbjct: 112 ----LCTVRLSRK 120
>gi|73537451|ref|YP_297818.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134]
gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
Length = 530
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT Q I E G + V P+ ++E + TL+ P I R G
Sbjct: 32 IVFVDLETTGAD--AQHDRITEIGVVEVGPEGIQE---WDTLLDPGVS--IPPFIQRLTG 84
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT + V PTFA IA+ + + L GR++ HN RFD ++ F G
Sbjct: 85 ITDETVQGQPTFASIAEALAERLQGRLFVAHNA-RFDYGFLKNEFRRAG 132
>gi|354721525|ref|ZP_09035740.1| DNA polymerase III subunit epsilon [Enterobacter mori LMG 25706]
Length = 243
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD + + G HN FD + F+++ R P+
Sbjct: 66 HGIADEFLLDKPTFADVADEFLEYIKGAELVIHNA-SFDIGFMDYEFSKLNRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|345297984|ref|YP_004827342.1| DNA polymerase III subunit epsilon [Enterobacter asburiae LF7a]
gi|345091921|gb|AEN63557.1| DNA polymerase III, epsilon subunit [Enterobacter asburiae LF7a]
Length = 246
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD + + G HN FD + F+++ R P+
Sbjct: 69 HGIADEFLLDKPTFADVADEFLEYIRGAELVIHNA-SFDIGFMDYEFSKLNRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|385682020|ref|ZP_10055948.1| hypothetical protein AATC3_39113 [Amycolatopsis sp. ATCC 39116]
Length = 573
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P +D + FD+ETT T+PG I E GA+ V + E L ++TLV P P +
Sbjct: 21 PLRD-TTFVVFDLETTG-TKPGPD-GITEIGAVKV--RGGEVLGEFATLVDPGMP--VPP 73
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
V GIT + +P + + G + HN FD + +R A G P P
Sbjct: 74 QIVALTGITSAMLHDAPKIDRVLPAFLEFASGAVLVAHNA-PFDTSFMRAACLHHGYPWP 132
Query: 123 EPKGTIDSLALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+P + T R RR + ++++LA FG HR+LDD R + VL
Sbjct: 133 KPA------VVCTVRLARRVLTRQDSPSFRLSALAALFGSPVTPNHRALDDARATVHVL 185
>gi|359421865|ref|ZP_09213770.1| DNA polymerase III epsilon subunit [Gordonia araii NBRC 100433]
gi|358242199|dbj|GAB11839.1| DNA polymerase III epsilon subunit [Gordonia araii NBRC 100433]
Length = 620
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCNGI 70
D+ETT + +R AI E GA+ VC E + ++TLV P A P+ I +L+ GI
Sbjct: 69 LDLETTGGS--AERDAITEIGAVKVCGG--EVVGEFATLVDPDRAIPDEIVALT----GI 120
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V ++P ++ + + G + HN RFD + A +G P T+ +
Sbjct: 121 TETMVSTAPRIGEVLASFLEFARGCVLVAHNS-RFDLGFLSAAARRLGLDWHFP-ATLCT 178
Query: 131 LALLTQRFGRR-AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+AL + R A +++A LA F THR+LDD R ++VL
Sbjct: 179 VALARRVLTREEAPSVRLADLAILFRASTTPTHRALDDARATVDVL 224
>gi|375099548|ref|ZP_09745811.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora cyanea NA-134]
gi|374660280|gb|EHR60158.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora cyanea NA-134]
Length = 572
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 93/208 (44%), Gaps = 17/208 (8%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT G I E GA+ V + E L ++TLV P P I V GIT
Sbjct: 21 DLETTGGAPDGGN--ITEIGAVKV--RGGEVLGEFATLVDPGVP--IPPQIVELTGITTA 74
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V S+P + + G + HN FD + +R A AE G P+P T+
Sbjct: 75 MVRSAPGIEQVLPAFLEFAAGAVLVAHNA-GFDTSFLRAACAEHGFTWPKP--TVVCTLK 131
Query: 134 LTQRFGRRA--GDM--KMASLATYFGLGQQ-THRSLDDVRMNLEVLKYCATVL--FLESS 186
L +R R+ G + +++SLA FG G HR+LDD + ++VL L S
Sbjct: 132 LARRVLRQEPRGRLSYRLSSLAALFGSGTTPNHRALDDAKATVDVLHGLLERLGPLGVQS 191
Query: 187 LPDIFTVNSWVSPNATTRSRSNAKSSPE 214
L ++ V+P A R R A+ PE
Sbjct: 192 LEELLDYLPDVTP-AQRRKRDLARDLPE 218
>gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4]
gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4]
Length = 588
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P +D + D+ETT RPG+ AI E GA+ + + E + +TLV P I
Sbjct: 18 PLRD-TTFVVVDLETT-GARPGED-AITEIGAVKI--RGGEVIAEMATLVDPG--RSIPP 70
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
V GIT V+ +P + + G + HN FD ++ A A P
Sbjct: 71 HIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAP-FDTGFLKAAAAATD--TP 127
Query: 123 EPKGTIDSLALLTQRFGRR--AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
PK T+ L +R R A +K++SLA +G THR+LDD R ++VL
Sbjct: 128 WPKFTVLCTVKLARRVLTRDEAPSVKLSSLARLLDVGTTPTHRALDDARATVDVL 182
>gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Carnobacterium sp. AT7]
gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Carnobacterium sp. AT7]
Length = 939
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 11 AFFDVETTV-PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRC 67
A D+ETT G R +++FG +L+ ++ +H ++T + P + P+ I L+
Sbjct: 8 AVVDIETTGGNVASGDR--MIQFGCVLLEGDQV--VHRFATNINPLTSIPKQIEHLT--- 60
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
G++ V +P F DIA T++++L G I HNI +FD + G PA + KG
Sbjct: 61 -GLSNKTVAQAPYFEDIAATIYNLLDGCIIIAHNI-QFDYTFLSAELQRCGMPALQNKG- 117
Query: 128 IDSLAL 133
ID++ L
Sbjct: 118 IDTVEL 123
>gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
35316]
gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
35316]
Length = 246
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD + + G HN FD + F+++ R P+
Sbjct: 69 HGIADEFLLDKPTFADVADEFLEYIKGAELVIHNA-SFDIGFMDYEFSKLNRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARRMFPGKR 145
>gi|406965868|gb|EKD91455.1| hypothetical protein ACD_30C00005G0023 [uncultured bacterium]
Length = 472
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 16/111 (14%)
Query: 8 SEIAFFDVETTVPTRPGQRFA--ILEFGAILVCPKKLEELHNYSTLVRPA--DPELISSL 63
++AF D+ETT G R + I+E G + V KL E +Y TL+ P PE I L
Sbjct: 6 KKLAFVDIETT-----GCRISDRIIEIGILRVENHKLIE--SYQTLLNPQCHIPEEIVEL 58
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAF 114
+ GITP + ++PTF ++ ++ +L I+ HN+ RFD + ++ F
Sbjct: 59 T----GITPSQLEAAPTFYEVKKDIYSLLEDCIFVAHNV-RFDLSFLKNEF 104
>gi|359770424|ref|ZP_09273903.1| DNA polymerase III epsilon subunit [Gordonia effusa NBRC 100432]
gi|359312477|dbj|GAB16681.1| DNA polymerase III epsilon subunit [Gordonia effusa NBRC 100432]
Length = 608
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPAD---PELISSLSVRCNGITPDAVVSSPTFADI 84
AI E GA+ + ++ E + ++TLV P P++++ GIT V ++PT +
Sbjct: 69 AITEIGAVRI--QRGEVVGEFATLVDPGREIPPQIVT-----LTGITTAMVTAAPTVDSV 121
Query: 85 ADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAG 143
F+ G + HN RFD +R + + P T+ ++A+ + R A
Sbjct: 122 LPAFFEFARGAVLVAHNA-RFDTGFLRRGASSLHLDWPF-AATLCTVAMARRILSRDEAP 179
Query: 144 DMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+K+A+LA F + + THR+LDD R +EV
Sbjct: 180 TVKLAALADLFDVATRPTHRALDDARATVEVF 211
>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
Length = 328
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 18/245 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + + A+ + E ++ TLV P DP V +G
Sbjct: 24 AVVDVETTGLARDDRIIS----AAVYRLDARGEVEDHWYTLVNPERDPG-----PVWIHG 74
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T +A+ +P F DIA+ L R+ HN + FD I +A R AP + +
Sbjct: 75 LTSEALEGAPLFTDIAEEFAARLADRVLVAHNAV-FDWQMIAREYARARREAPV-RQRLC 132
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK---YCATVLFLES 185
++A L++ G + K+ SLA +FG+ Q + H +LDD R+ E + + A +
Sbjct: 133 TIA-LSKELGLPLPNHKLESLAAHFGVVQRRAHHALDDARVLAEAFRPSLWAAAAGGVRL 191
Query: 186 SLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEI 245
L + + W S R +S +S S + N P + K+ +
Sbjct: 192 PLLECRPLTEW-SDRPVPRQQSGGYGGYRASSWRPSRKRPACPYPNPGRYEPGKRLKQGM 250
Query: 246 HPIFS 250
FS
Sbjct: 251 RVAFS 255
>gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC
27029]
gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC
27029]
Length = 584
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT G I E GA+ V + EEL +TLV P P I GIT
Sbjct: 36 DLETTGGAPDGG--GITEIGAVKV--RGGEELGVLATLVNPGVP--IPPFITVLTGITQA 89
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
++ +P + + + + + HN +D ++ A A+ G P P+ +D+ AL
Sbjct: 90 MLLPAPPIEQVLPSFLEFVSDAVLVAHNA-PYDVGFLKAACAKHGYRWPNPR-VLDTAAL 147
Query: 134 LTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+ R + K+ +LA YF Q THR+LDD + ++VL
Sbjct: 148 ARRVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVL 190
>gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
E264]
gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
E264]
gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis
E264]
Length = 241
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARAGDR--IIEVGCVELLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA--PEPKG 126
G+T + + P FADI D + D + HN FD + FA +G PA G
Sbjct: 58 GLTTEFLRDKPKFADIVDQLRDFVRDAELIIHNA-PFDLGFLDAEFALLGLPAFSDHCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+L Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|395216281|ref|ZP_10401257.1| DNA polymerase III subunit epsilon [Pontibacter sp. BAB1700]
gi|394455433|gb|EJF09903.1| DNA polymerase III subunit epsilon [Pontibacter sp. BAB1700]
Length = 469
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP--ELISSLSVRCN 68
A D+ETT ++P Q I E AI + K E + YSTL+ P P IS L+
Sbjct: 3 AIIDIETT-GSQPTQD-RITEI-AIFIHDGK-EIVDKYSTLINPQRPIPYYISQLT---- 54
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GIT D V +P F ++A + G ++ HN+ RFD + I++ FA++G
Sbjct: 55 GITDDMVQDAPKFYEVAKEIVQFTEGMVFVAHNV-RFDYSFIKKEFADLG 103
>gi|410641539|ref|ZP_11352059.1| DNA polymerase III subunit epsilon [Glaciecola chathamensis S18K6]
gi|410139072|dbj|GAC10246.1| DNA polymerase III subunit epsilon [Glaciecola chathamensis S18K6]
Length = 788
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
DVETT +PG R I E GA+ V ++ + ++S+L+ P P I+ L+ GI+
Sbjct: 627 DVETTGGCKPGHR--ITEIGAVKVINGRV--VDSWSSLINPERRVPHFITRLT----GIS 678
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
D V +P F ++ D + + I+ HN+ FD + +A + R PK
Sbjct: 679 NDMVEDAPLFCEVIDDLECFMQDCIFVAHNV-NFDYGFFKLEYARLERSFSMPK------ 731
Query: 132 ALLTQRFGRR----AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
L T R R+ + + +L +GL HR+L D + E+L
Sbjct: 732 -LCTVREMRKYYPGSKSYSLGNLTKEYGLSLDNHHRALCDAQAAAELL 778
>gi|422874612|ref|ZP_16921097.1| DNA polymerase III PolC [Clostridium perfringens F262]
gi|380304253|gb|EIA16542.1| DNA polymerase III PolC [Clostridium perfringens F262]
Length = 1449
Score = 52.4 bits (124), Expect = 5e-04, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 15/189 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E FD+ETT + + I+E GA+ + K E + ++ST V P P I+ L+
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKL--KDGEIVDSFSTFVDPKVNIPYKITELT-- 487
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
IT + V PT ++ + + + HN FD I++ A++G+ P
Sbjct: 488 --SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLADMGKTLKNP-- 542
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLES 185
+D++ L + +K+ +A + G+ + HR++DD + E+LK+ + E
Sbjct: 543 VMDTVPLARYLYPDLK-KVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEM 601
Query: 186 SLPDIFTVN 194
+ D+ T+N
Sbjct: 602 DIHDVKTLN 610
>gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
TXDOH]
gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4]
Length = 241
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARAGDR--IIEVGCVELLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA--PEPKG 126
G+T + + P FADI D + D + HN FD + FA +G PA G
Sbjct: 58 GLTTEFLRDKPKFADIVDQLRDFVRDAELIIHNA-PFDLGFLDAEFALLGLPAFSDHCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+L Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|357019571|ref|ZP_09081824.1| hypothetical protein KEK_06192 [Mycobacterium thermoresistibile
ATCC 19527]
gi|356480744|gb|EHI13859.1| hypothetical protein KEK_06192 [Mycobacterium thermoresistibile
ATCC 19527]
Length = 606
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 74/179 (41%), Gaps = 27/179 (15%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ V + E L +TLV P I V GIT V +P + T
Sbjct: 37 AITEIGAVKV--RGGEVLGELATLVDPG--RSIPPQIVALTGITSAMVYDAPPIESVLPT 92
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
+ G + HN FD +R A G P P+ L T R RR
Sbjct: 93 FLEFSRGAVLVAHNA-GFDIGFLRAAAERCGIDWPRPQ------VLCTVRLARRVLTRDE 145
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL---------KYCATVLFLESSLPDI 190
A +++A+LA FG THR+LDD R + VL + T L++ LPD+
Sbjct: 146 APSLRLAALARLFGSPTTPTHRALDDARATVHVLHGLIERVGNQGVHTFADLQAYLPDV 204
>gi|357020105|ref|ZP_09082340.1| DNA polymerase III subunit epsilon [Mycobacterium thermoresistibile
ATCC 19527]
gi|356480141|gb|EHI13274.1| DNA polymerase III subunit epsilon [Mycobacterium thermoresistibile
ATCC 19527]
Length = 309
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 18/159 (11%)
Query: 22 RPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNGITPDAVVSSPT 80
RPGQ I+ A+ V E + +TL+ P DP +G+T D + P
Sbjct: 7 RPGQA-RIVSIAALAVGDDGNVE-RSVATLLNPGVDPG-----PTHIHGLTADMLAGQPQ 59
Query: 81 FADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL---LTQR 137
FADI D + DIL GR HN+ FD A + I P IDS+ L +R
Sbjct: 60 FADIVDDLIDILRGRTLVAHNV-AFDYAFLVAEAELIDAELP-----IDSVMCTIELARR 113
Query: 138 FGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
++++ +LA ++G+ Q + H +LDD + ++LK
Sbjct: 114 MQLGTENLRLETLAAHWGVTQLRAHDALDDALVLTQILK 152
>gi|357237757|ref|ZP_09125097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus ictaluri 707-05]
gi|356753506|gb|EHI70616.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus ictaluri 707-05]
Length = 819
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+ A D+E T G AI++ G +++ K++ +H+Y T V P P +S +
Sbjct: 7 KKYAVIDLEAT---NAGPNAAIIQVGIVIIEGKEI--VHSYQTDVNPHQP--LSDHIKQL 59
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT + +P F+ +A +FD++ ++ HN+ +FD + EA G P+
Sbjct: 60 TGITDKQLQKAPDFSQVAKPIFDLIEDCVFVAHNV-KFDANLLAEALFFEGYDLLTPR-- 116
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD----VRMNLEVLK 175
+D++ L Q F ++ L+ GL Q+ H ++ D R+ L++L+
Sbjct: 117 VDTVE-LAQVFYPTLEKYNLSHLSKELGLQLQEAHTAIADAQATARLFLKLLE 168
>gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
Length = 244
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARAGDR--IIEIGCVELLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++AD + + + G HN FD + FA +G P + G
Sbjct: 58 GLTTEFLSDKPKFAEVADQIREFVRGAELIIHNA-PFDLGFLDAEFALLGLPPFSEHCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|433644693|ref|YP_007277260.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
gi|433301413|gb|AGB27230.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
Length = 193
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNGITPDAVVSSPTFADIADT 87
+L A+ + P E H TL+ P DP +G+T + P +ADIAD
Sbjct: 24 VLSVAALTLTPAATPE-HALHTLLNPGVDPG-----PTHVHGLTAAMLAGQPRYADIADQ 77
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKM 147
+ +LHGRI HN FD A + G A P + L R + +
Sbjct: 78 LAPLLHGRILVAHNA-AFDYAFLAAEARRCG--ADLPVADVLCTHELADRLDLGLPSLSL 134
Query: 148 ASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
A+LA ++G+ Q + H +LDD R+ +L
Sbjct: 135 AALAAHWGIQQARPHDALDDARVLAAIL 162
>gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591]
gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591]
Length = 244
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKLEELHNYSTLVRP---ADPELISSLSVR 66
D ETT + G + I+E GA+ V ++L H + +RP DPE +
Sbjct: 11 LDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRH-FHVYLRPDRLVDPE-----AYN 64
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PAPEP 124
+GI+ + +V PT+AD+AD D + G HN FD + F +GR P E
Sbjct: 65 IHGISDEFLVDKPTYADVADDFLDFIRGAELVIHNA-SFDIGFMDYEFRLLGRDIPKTET 123
Query: 125 KGTIDSLALLTQRF--GRR 141
TI L+ +R G+R
Sbjct: 124 FCTITDSLLMARRLFPGKR 142
>gi|441147579|ref|ZP_20964568.1| DNA polymerase III subunit epsilon [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440620191|gb|ELQ83225.1| DNA polymerase III subunit epsilon [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 612
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVET+ +R +L A++ + E +STL+ P DP V +G
Sbjct: 21 ALVDVETSGLI--ARRDRVLSV-AVVTVGRDGERTGEFSTLLNPGCDPG-----PVDVHG 72
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+ + + +PTF +A + ++L GR++ HN +FD + FA P + +
Sbjct: 73 LPSERLRGAPTFDQVAGKIAEMLQGRVFVAHNA-QFDYDFLAHEFARARMWLPVSQ-RLC 130
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
+LA L+++ DMK+ +LA ++G+ QQ H +LDD R+ +L+
Sbjct: 131 TLA-LSRQVDPPTDDMKLGTLAAHYGVPQQRAHDALDDTRVLAGILR 176
>gi|375152150|gb|AFA36533.1| UTP-glucose-P-uridyltransferase-like protein, partial [Lolium
perenne]
Length = 101
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 304 EMCSTASVSEGSSGYAGFMEPDEVSLSSISDGVVPLFPGSQIQKIKLLHNDVILQLCCSR 363
++ +T + SSGY+GF+EP +VS I + P Q+ + H D LQLCC+
Sbjct: 37 KLNATMHMGVSSSGYSGFLEPSDVSTECIQ---ISANPSYYTQRTFIKHKDSPLQLCCAG 93
Query: 364 LKIRFGIS 371
LK++FG+S
Sbjct: 94 LKVQFGVS 101
>gi|375146288|ref|YP_005008729.1| DNA polymerase III subunit epsilon [Niastella koreensis GR20-10]
gi|361060334|gb|AEV99325.1| DNA polymerase III, epsilon subunit [Niastella koreensis GR20-10]
Length = 455
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 23/153 (15%)
Query: 45 LHNYSTLVRPAD--PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNI 102
++ + TLVRP P I L+ GI+ D V +PTF ++A +F++L G+I+ HN+
Sbjct: 33 INRFETLVRPVRTIPYYIQVLT----GISNDMVAEAPTFEEVAPQIFELLTGKIFVAHNV 88
Query: 103 LRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAG----DMKMASLATYFGLG- 157
FD + ++ F+ G ++ L T R ++ + +L +FG+
Sbjct: 89 -NFDYSFLKHHFSAAGY-------ELNLNKLCTVRLTKKVFPGLPSYSLGNLCNHFGIAV 140
Query: 158 QQTHRSLDDVRMNLEVLKYCATVLFLESSLPDI 190
HR+ D + +L++ L L ++ P I
Sbjct: 141 YNRHRAGGDTDATVRLLEH----LLLHNAEPHI 169
>gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis
MSMB43]
gi|424903256|ref|ZP_18326769.1| putative DNA polymerase/helicase [Burkholderia thailandensis
MSMB43]
gi|390931129|gb|EIP88530.1| putative DNA polymerase/helicase [Burkholderia thailandensis
MSMB43]
Length = 379
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AF D+ETT + R I E G ++V + ++TLV P P I + G
Sbjct: 15 LAFVDLETTGGSAAEHR--ITEIGVVVV---NASHVSTWTTLVDPRQP--IPPFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTFADIA +F+ L G+++ HN FD +R F G
Sbjct: 68 ITDAMVRGAPTFADIASALFERLDGKLFVAHNA-SFDRGFLRAEFERAG 115
>gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134]
gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134]
Length = 245
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
Q + I FFD+ETT R + + K+E+ L+ P P I
Sbjct: 2 QIKKPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEK----ERLINPTIP--IPPEV 55
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
+ +G++ + V +PTF +A ++F+ + G AG+N L FD + E FA G PEP
Sbjct: 56 TKVHGVSDEMVKDAPTFHQVAKSLFEFIRGCDLAGYNHLNFDMPLLIEEFARAGVVFPEP 115
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-----QQTHRSLDDVRMNLEVLK 175
+ + F R +L+ + L + H ++ D + LE+ +
Sbjct: 116 DVQYIDVMKVYYHFHPR-------TLSAAYQLYCHKELENAHNAMADTQATLEIFE 164
>gi|228982633|ref|ZP_04142892.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407]
gi|410678417|ref|YP_006930788.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|228776816|gb|EEM25124.1| DNA polymerase III PolC [Bacillus thuringiensis Bt407]
gi|409177547|gb|AFV21851.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
Length = 286
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Query: 7 RSEIAFFDVETTV--PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISS 62
R+ D+ETT P + G+ I E GA+ K+ + YS L+ P P I+
Sbjct: 16 RNNFVVLDIETTAFSPVKGGR---ITEIGAVKYIDGKV--VDKYSQLINPEMKIPANITK 70
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GIT D V P + + + G + HN +FD R + E +
Sbjct: 71 LT----GITNDMVQGKPVYGQVLPVFQQFIDGFLVVAHNA-KFDWNRFLLFYFE--KVGI 123
Query: 123 EPKG-TIDSLALLTQRFGRRAGDMKMASLATYFG-LGQQTHRSLDDVRMNLEVLKYC 177
PK +DS+A+ Q F G K+ T FG L + HR+ +D E YC
Sbjct: 124 HPKNEVLDSVAVF-QHFCPNKGKYKLDDFCTTFGYLNKNRHRAYEDA----EATGYC 175
>gi|90407281|ref|ZP_01215467.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
gi|90311564|gb|EAS39663.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
Length = 236
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLV--RPADPELISSLSVRC 67
D ETT + G + I+E G + V ++L H + L R DPE +V
Sbjct: 12 LDTETTGMNKDGTIYLGHRIIEIGCVEVINRRLTGRHYHVYLQPDREVDPE-----AVTV 66
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR---PAPEP 124
+GIT + + P FADIAD D + G HN FD + + F + + P E
Sbjct: 67 HGITDEFLQDKPHFADIADDFIDFIRGADLVIHNA-PFDVGFMDQEFRFLNKKTQPTEEI 125
Query: 125 KGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+L + + F G+R + L +G+ + HR+L ++ E+L
Sbjct: 126 ATVTDTLVMAKKMFPGKRNN---LDILCDRYGINTK-HRTLHGALLDAEIL 172
>gi|330816255|ref|YP_004359960.1| DNA polymerase III subunit epsilon [Burkholderia gladioli BSR3]
gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
Length = 240
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--IIEIGCVEMLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++A + D + G HN FD I F +G P G
Sbjct: 58 GLTTEFLSDKPKFAEVAHAICDFVRGAELIIHNA-PFDIGFIDAEFERVGLPPLNQHCDG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+L Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
'5-way CG']
Length = 265
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
+I F DVETT R R I+E G KL L STL++ D P+ IS +
Sbjct: 2 KITFLDVETTGLLRD-SRARIIELGFSTWENGKL--LRKNSTLIKSVDVVPDNIS----K 54
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
NGIT + + +P F D+ ++ + G I HN L FD + R P
Sbjct: 55 INGITTEMLKDAPGFEDVWKSIKEDFQGSILVAHN-LAFDVGMVNRELILANR-IPLGNM 112
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFG-LGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
ID+L L+++ ++ +A + G L + HR++ D LE L+ + L
Sbjct: 113 GIDTLP-LSRKMLPELSSYRLGEIAKHMGILNESPHRAMGD----LETLEKILSNLL--E 165
Query: 186 SLPDIF 191
SLP F
Sbjct: 166 SLPGTF 171
>gi|109898663|ref|YP_661918.1| DNA polymerase III subunit epsilon [Pseudoalteromonas atlantica
T6c]
gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
T6c]
Length = 769
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
DVETT +PG R I E GA+ V K+ + ++S+L+ P P I+ L+ GI+
Sbjct: 608 DVETTGGCKPGHR--ITEIGAVKVIDSKV--VDSWSSLINPERRVPHFITRLT----GIS 659
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
D V +P F ++ D + + I+ HN+ FD + + + R PK
Sbjct: 660 NDMVEDAPLFCEVIDDLEAFMQDCIFVAHNV-NFDYGFFKLEYGRLERAFSMPK------ 712
Query: 132 ALLTQRFGRR----AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
L T R R+ + + L+ +GL HR+L D + E+L
Sbjct: 713 -LCTVREMRKYYPGSPSYSLGKLSKEYGLSLDNHHRALCDAQAAAELL 759
>gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 243
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+++ R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFLDYIKGAELVIHNA-SFDIGFMDYEFSKLQRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
paramesenteroides ATCC 33313]
gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
paramesenteroides ATCC 33313]
Length = 970
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT T R I++ V KK+ ++ +STL+ P E I V+ GI
Sbjct: 35 AVVDLETTRTTSESGR--IIQIAIAFVQNKKI--INQFSTLINPH--ESIPRNVVQLTGI 88
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
+ V +P+F ++A+++ +L G I+ HN+ FD + F IG T++
Sbjct: 89 NAEMVAGAPSFEEVAESIHTMLTGTIFVAHNV-NFDLPFLNAEFQRIGM------NTLNL 141
Query: 131 LAL----LTQRFGRRAGDMKMASLATYFGL 156
+A+ L+Q A ++ L +Y L
Sbjct: 142 VAIDTVTLSQIVWPTAPGFRLVDLTSYLAL 171
>gi|386846611|ref|YP_006264624.1| DNA polymerase III subunit epsilon [Actinoplanes sp. SE50/110]
gi|359834115|gb|AEV82556.1| DNA polymerase III subunit epsilon [Actinoplanes sp. SE50/110]
Length = 603
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 12/196 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D+ETT G I E GA+ V + + + TLV P +P + GIT
Sbjct: 40 LDLETTGGAPDGG--GITEIGAVKV--RGGVPIGEFGTLVNPGEP--LPPFITVLTGITE 93
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+ +P + + + L G + HN +D ++ A A G P P P+ +D+ A
Sbjct: 94 AMLRPAPPIETVLPALLEFLRGAVLVAHNA-PYDVGFLKAACARHGYPWPAPR-VLDTAA 151
Query: 133 LLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVL--FLESSLP 188
L + R + K+ +LA +F Q HR+LDD + ++VL L F +L
Sbjct: 152 LARRALTRDEVPNRKLGTLAQFFRSAVQPNHRALDDAKATVDVLHGLIERLGSFRVHTLG 211
Query: 189 DIFTVNSWVSPNATTR 204
D V+P +R
Sbjct: 212 DAIEFAKAVTPAQRSR 227
>gi|443491506|ref|YP_007369653.1| DNA polymerase III subunit [Mycobacterium liflandii 128FXT]
gi|442584003|gb|AGC63146.1| DNA polymerase III subunit [Mycobacterium liflandii 128FXT]
Length = 674
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 24/157 (15%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + L ++TLV DP+ I VR GIT + +PT +
Sbjct: 79 AITEIGAVKVRGGVI--LGEFATLV---DPQRSIPPQIVRLTGITTAMLCDAPTIDSVLP 133
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFA--EIGRPAPEPKGTIDSLALLTQRFGRR--- 141
F+ + + HN FD +R A +I RP S + T R RR
Sbjct: 134 MFFEFVGNSVLVAHNA-GFDIGFLRAAAGRCDIARPG--------SKVVCTVRLARRVLS 184
Query: 142 ---AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + Q THR+LDD R +EVL
Sbjct: 185 REEAPSVRLAALARLFSVATQPTHRALDDARATVEVL 221
>gi|423396064|ref|ZP_17373265.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-1]
gi|423406944|ref|ZP_17384093.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-3]
gi|401652547|gb|EJS70102.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-1]
gi|401659519|gb|EJS77003.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-3]
Length = 315
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Query: 29 ILEFGAILVCPKKL-EELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
I++ A+ C +L ++ +Y RP P I+SL+ GIT V +PT ++
Sbjct: 27 IIQVAAVKYCNHELVDQFVSYVNPERPI-PSRITSLT----GITNYRVSDAPTIEEVLPL 81
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKM 147
LH + HN FD ++ +G PEPK + L +++ + A + K+
Sbjct: 82 FLAFLHTNVIVAHNA-SFDMRFLKSNVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKL 138
Query: 148 ASLATYFGLGQQTHRSLDDVRMNLEVLKYCAT 179
+L G+ +H + DD V + CA+
Sbjct: 139 ETLKRMLGIRLSSHNAFDDCITCAAVYQKCAS 170
>gi|116514157|ref|YP_813063.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|116093472|gb|ABJ58625.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 261
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 24/164 (14%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT G++ I++ GA+ V + + + +ST V P E I+ GI+
Sbjct: 11 FDLETT-----GKK--IIQIGALKV--RDDQTVAKFSTYVNPL--EKINDYVSHLTGISN 59
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
++P ++ D + GHNIL FDC A+ G P PK +D+L
Sbjct: 60 YQTDAAPLIDEVMPDFLDFVGDDTLVGHNILSFDC----NVLADNGYPVANPK--LDTL- 112
Query: 133 LLTQRFGRRA------GDMKMASLATYFGLGQQTHRSLDDVRMN 170
LL + +R +++++++ Y+G+ +H ++ D N
Sbjct: 113 LLANSYKKRGLFADPIPNVRLSTMKEYYGININSHIAISDCITN 156
>gi|322831648|ref|YP_004211675.1| DNA polymerase III subunit epsilon [Rahnella sp. Y9602]
gi|384256762|ref|YP_005400696.1| DNA polymerase III subunit epsilon [Rahnella aquatilis HX2]
gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602]
gi|380752738|gb|AFE57129.1| DNA polymerase III subunit epsilon [Rahnella aquatilis HX2]
Length = 245
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 8 SEIAFFDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISS 62
+ I D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 8 NRIVVLDTETTGMNKLGVHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFG- 66
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
+GI+ + + PTFAD+AD + + G HN FD + F +GR P
Sbjct: 67 ----VHGISDEFLADKPTFADVADDFIEYIRGGELVIHNA-TFDIGFMDYEFDMLGRNLP 121
Query: 123 EPK---GTIDSLALLTQRF-GRR 141
+ + DSLA+ + F G+R
Sbjct: 122 KTETFCKITDSLAMARKLFPGKR 144
>gi|375087293|ref|ZP_09733673.1| exonuclease, DNA polymerase III, epsilon subunit [Megamonas
funiformis YIT 11815]
gi|374561383|gb|EHR32723.1| exonuclease, DNA polymerase III, epsilon subunit [Megamonas
funiformis YIT 11815]
Length = 188
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 48 YSTLVRPADPELI-SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFD 106
Y++L+RP PE+ +++ +GITP V ++PTFADI + L RI HN FD
Sbjct: 38 YNSLIRP--PEMFFEEGNIKIHGITPQMVENAPTFADIWKDLRMYLDNRIVIAHNAF-FD 94
Query: 107 CARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDD 166
+R + P+ K + ++ + + K+ +L +F + + H +LDD
Sbjct: 95 MGVLRSCIWKYNLAKPQFKTA--CTVQIARKVWPQLPNHKLNTLGEFFQIQFKHHDALDD 152
Query: 167 VRM 169
++
Sbjct: 153 AKV 155
>gi|343924173|ref|ZP_08763736.1| DNA polymerase III epsilon subunit [Gordonia alkanivorans NBRC
16433]
gi|343765978|dbj|GAA10662.1| DNA polymerase III epsilon subunit [Gordonia alkanivorans NBRC
16433]
Length = 621
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 20/172 (11%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+ D+ETT G R I E GA+ + + E + ++TLV P P I V G
Sbjct: 50 LVVVDLETTGSNPAGDR--ITEIGAVKI--RGGEVIGEFATLVDPGRP--IPPQIVTLTG 103
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
IT V +P + + + G I HN RFD +R+ + P
Sbjct: 104 ITTAMVTDAPRIESVLPSFLEFARGAILVAHNA-RFDMGFLRQNALRLHLDWPF------ 156
Query: 130 SLALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
SL+L T RR A +K+++LA F + + THR+LDD R +EV
Sbjct: 157 SLSLCTVTMARRILPRDEAPTVKLSALAELFDVSVRPTHRALDDARATVEVF 208
>gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1]
gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus
radiodurans R1]
Length = 197
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 24/177 (13%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV--- 65
++ FD+ETT + AI+E GA+ + +++E + TLVRP P+ S LS+
Sbjct: 22 DVVVFDLETTGFSPASA--AIVEIGAVRIVGGQIDETLKFETLVRPTRPD-GSLLSIPWQ 78
Query: 66 --RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP-AP 122
R +GI+ + V +P D+ FD + G HN+ FD +R +G AP
Sbjct: 79 AQRVHGISDEMVRRAPAIKDVLPDFFDFVDGSAVVAHNV-SFDGGFMRAGAERLGLSWAP 137
Query: 123 EPKGTIDSLALLTQRFGRRA----GDMKMASLATYFGLG---QQTHRSLDDVRMNLE 172
E + L T + RRA + LA GL HRS DV++ +
Sbjct: 138 ERE-------LCTMQLSRRAFPRERTHNLTVLAERLGLEFAPGGRHRSYGDVQVTAQ 187
>gi|423669181|ref|ZP_17644210.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM034]
gi|423674690|ref|ZP_17649629.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM062]
gi|401299738|gb|EJS05334.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM034]
gi|401309272|gb|EJS14637.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM062]
Length = 315
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 29 ILEFGAILVCPKKL-EELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
I++ A+ C +L ++ +Y RP P I+SL+ GIT V +PT A++
Sbjct: 27 IIQVAAVKYCNHELVDQFVSYVNPERPI-PSRITSLT----GITNYRVSDAPTIAEVLPL 81
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKM 147
L I HN FD ++ +G PEPK + L +++ + A + K+
Sbjct: 82 FLAFLDTNIIVAHN-ASFDMRFLKSNVNMLG--LPEPKNNVIDTVFLAKKYMKHAPNHKL 138
Query: 148 ASLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
+L G+ +H + DD V + CA V
Sbjct: 139 ETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 171
>gi|418468676|ref|ZP_13039453.1| DNA polymerase III, partial [Streptomyces coelicoflavus ZG0656]
gi|371550718|gb|EHN78089.1| DNA polymerase III, partial [Streptomyces coelicoflavus ZG0656]
Length = 643
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 9 EIAFFDVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSV 65
E A DVET+ VP +R +L + + P + +STL+ P DP V
Sbjct: 28 EWALVDVETSGLVP----RRDRVLSVAVVTLGPDG-AQTGEFSTLLDPGCDPG-----PV 77
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+G+T + + +P F +A+ + +L GR+ HN +FD + FA P +
Sbjct: 78 HVHGLTAERLRGAPAFDQVAERIGALLEGRVLVAHNA-QFDYDFLAHEFARARLRLPVAR 136
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
+ +LA L +R D+++ +LA ++G+ Q + H +LDD R+ VL+
Sbjct: 137 -RLCTLA-LNRRVDPPTDDLRLGTLAAHYGVPQLKAHDALDDTRVLAGVLR 185
>gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
1100]
gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
DSM 1100]
Length = 282
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
++ FFD+E T R + AI+ K E S ++ P P IS ++ +
Sbjct: 8 DLCFFDIEATGLNVVRDRIVQI---AIIKYFKDGREPQELSLMINPGIP--ISLEAILVH 62
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GI P V + PTF +A ++D + AG+N RFD + E FA +G
Sbjct: 63 GIQPKDVANKPTFQQLAQKIWDFIGNADLAGYNSNRFDIPMLMEEFARVG 112
>gi|451940049|ref|YP_007460687.1| DNA polymerase III subunit epsilon [Bartonella australis Aust/NH1]
gi|451899436|gb|AGF73899.1| DNA polymerase III subunit epsilon [Bartonella australis Aust/NH1]
Length = 234
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE--LISSLSVRC 67
FD+ETT + R I+E G + + L H Y +P+ +IS V
Sbjct: 5 IFDIETTGLDKDSDR--IIEIGCVEMVDHYLTGRRFHVY------LNPQGVMISDEVVAI 56
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+G+T + + F DIAD + + + + HN FD + + I +P
Sbjct: 57 HGLTNERLKDEKKFNDIADELLEFIDNAVIIAHNA-SFDVSFLNAELERINKPLISINNV 115
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+LA+ ++F G + SL FG+ +HRSL ++ E+L
Sbjct: 116 IDTLAMARRKFP--LGPNSLDSLCKRFGV-DNSHRSLHGALLDAEIL 159
>gi|404444197|ref|ZP_11009358.1| hypothetical protein MVAC_13261 [Mycobacterium vaccae ATCC 25954]
gi|403654271|gb|EJZ09203.1| hypothetical protein MVAC_13261 [Mycobacterium vaccae ATCC 25954]
Length = 617
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 86/207 (41%), Gaps = 32/207 (15%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRF-AILEFGAILVCPKKLEELHNYSTLVRP--ADPEL 59
P + D+ETT G+R I E GA+ V + E L ++TLV P A P
Sbjct: 15 PMLRETTFVVVDLETTGGRASGERHDEITEIGAVKV--RGGEVLGEFATLVDPGRAIPPQ 72
Query: 60 ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
I +L+ GIT V +P + + G + HN FD +R A
Sbjct: 73 IVALT----GITTAMVYDAPRIEAVLPAFLEFCRGAVLVAHNA-GFDIGFLRAAAERHHL 127
Query: 120 PAPEPKGTIDSLALLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLE 172
P P+P L T RR A +++++LA F G THR+LDD R ++
Sbjct: 128 PWPKPP------VLCTVTLARRVLTRDEAPSVRLSALAQLFRAGTTPTHRALDDARATVD 181
Query: 173 VL---------KYCATVLFLESSLPDI 190
VL + T L S LPD+
Sbjct: 182 VLHGLIERVGNQGVHTYAELRSYLPDV 208
>gi|373124717|ref|ZP_09538557.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 21_3]
gi|422327871|ref|ZP_16408898.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 6_1_45]
gi|371658845|gb|EHO24119.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 21_3]
gi|371662141|gb|EHO27352.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 6_1_45]
Length = 1448
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 19/149 (12%)
Query: 13 FDVETTVPTRPGQRF-AILEFGAILV----CPKKLEELHNYSTLVRPADPELISSLSVRC 67
FD+ETT + RF I+EFG +V C K L+ ++P P +S+ +
Sbjct: 401 FDLETTGLS---SRFDHIIEFGGQIVKDRACIKSLQ------LFIKP--PVALSAFTTEL 449
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT + + ++ +FAD D + D + I HN FD + + A IGRP P
Sbjct: 450 TGITEEHMKNAKSFADSIDEILDFIGDSILVAHNA-TFDYNFLNDELARIGRP-PIMNPV 507
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGL 156
ID+L L R G ++ +A +G+
Sbjct: 508 IDTLDLARSMQADRKG-YRLGQIARSYGI 535
>gi|346316469|ref|ZP_08857973.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 2_2_44A]
gi|345903092|gb|EGX72862.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 2_2_44A]
Length = 1448
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 19/149 (12%)
Query: 13 FDVETTVPTRPGQRF-AILEFGAILV----CPKKLEELHNYSTLVRPADPELISSLSVRC 67
FD+ETT + RF I+EFG +V C K L+ ++P P +S+ +
Sbjct: 401 FDLETTGLS---SRFDHIIEFGGQIVKDRACIKSLQ------LFIKP--PVALSAFTTEL 449
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT + + ++ +FAD D + D + I HN FD + + A IGRP P
Sbjct: 450 TGITEEHMKNAKSFADSIDEILDFIGDSILVAHNA-TFDYNFLNDELARIGRP-PIMNPV 507
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGL 156
ID+L L R G ++ +A +G+
Sbjct: 508 IDTLDLARSMQADRKG-YRLGQIARSYGI 535
>gi|441516128|ref|ZP_20997879.1| DNA polymerase III subunit epsilon [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441456999|dbj|GAC55840.1| DNA polymerase III subunit epsilon [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 599
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+ + D+ETT + Q+ AI E GA+ + + + L ++TLV P P I V
Sbjct: 31 TTLVVVDLETTGGS--AQQDAITEIGAVKI--RGGQVLGEFATLVDPGRP--IPPQIVSL 84
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAF--AEIGRPAPEPK 125
GIT V +P ++ F+ G I HN RFD +R A ++ P P
Sbjct: 85 TGITTAMVHDAPRIEEVLPAFFEFARGAILVAHNA-RFDLGFLRRAAERQQLAWPFPAHL 143
Query: 126 GT-IDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
T + + +L+Q + A +K+++LA F + + THR+LDD R ++V
Sbjct: 144 CTVVMARRILSQ---QEAPTVKLSALAELFDVAVKPTHRALDDARATVDVF 191
>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. HGF2]
gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. HGF2]
Length = 1448
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 19/149 (12%)
Query: 13 FDVETTVPTRPGQRF-AILEFGAILV----CPKKLEELHNYSTLVRPADPELISSLSVRC 67
FD+ETT + RF I+EFG +V C K L+ ++P P +S+ +
Sbjct: 401 FDLETTGLS---SRFDHIIEFGGQIVKDRACIKSLQ------LFIKP--PVALSAFTTEL 449
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT + + ++ +FAD D + D + I HN FD + + A IGRP P
Sbjct: 450 TGITEEHMKNAKSFADSIDEILDFIGDSILVAHNA-TFDYNFLNDELARIGRP-PIMNPV 507
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGL 156
ID+L L R G ++ +A +G+
Sbjct: 508 IDTLDLARSMQADRKG-YRLGQIARSYGI 535
>gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20]
gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20]
Length = 918
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 10/172 (5%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT R I++FG +LV K+ ++ ++ + P IS R I
Sbjct: 6 AVVDLETTGTDSTIDR--IIQFGCVLVQDGKI--INRFAADINP--DRRISKQIQRLTHI 59
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V +P F DIADT++++L I+ HNI FD + F G P G ID+
Sbjct: 60 TNQQVSKAPYFEDIADTIYNLLSNTIFVAHNIY-FDYHFLSNEFVRCGLPPLSIPG-IDT 117
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCATVL 181
+ L+Q F ++ LA G H++ D + + Y ++
Sbjct: 118 VE-LSQVFLPTESSFRLGDLADSIGFRHDNPHQADSDAEVTAALFLYIEAIM 168
>gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
Length = 936
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-AD-PELISSLSVRCN 68
A D+ETT TR GQ I++FG ++ +++ + YS L+ P AD P+ + +L+
Sbjct: 11 AVVDLETT-GTRRGQD-RIIQFGCAIIKNRQI--IKTYSFLINPKADIPQAVQNLT---- 62
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI P VV+ P F + A + DIL ++ HNI FD + A G P + I
Sbjct: 63 GIKPADVVNQPVFKNFATQIEDILQDTVFVAHNI-NFDLPFLNAELAANGFPKLRNRA-I 120
Query: 129 DSLAL 133
D++ L
Sbjct: 121 DTVEL 125
>gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 648
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 75/180 (41%), Gaps = 29/180 (16%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + L ++TLV DPE I VR GIT V +P +
Sbjct: 65 AITEIGAVKV--RGGVVLGEFATLV---DPERSIPPQIVRLTGITTAMVSDAPRIDAVLP 119
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR----- 141
+ + HN FD +R A A P PK L T R RR
Sbjct: 120 MFLEFAGDAVLVAHNA-GFDIGFLRAAAARCDIAWPRPK------VLCTVRLARRVLSRE 172
Query: 142 -AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL---------KYCATVLFLESSLPDI 190
A +++ +LA F + Q THR+LDD R +EVL + T L S LPD+
Sbjct: 173 EAPSVRLGALARLFAVAAQPTHRALDDARATVEVLHALIERVGNQGVHTYADLRSYLPDV 232
>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
MA-4680]
gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
avermitilis MA-4680]
Length = 325
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 21/212 (9%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + + A+ + E ++ T+V P DP V +G
Sbjct: 23 AVVDVETTGLARDDRIIS----AAVYRLDARGEVEDHWYTMVNPERDPG-----PVWIHG 73
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T D + +P F DIA L R+ HN + FD + I +A AP + +
Sbjct: 74 LTSDVLEGAPLFEDIAAEFASRLADRVLVAHNAV-FDWSMIAREYARAKSQAPV-RQRLC 131
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK---YCATVLFLES 185
++A L++ G + K+ SLA +FG+ QQ H +LDD R+ E + + A +
Sbjct: 132 TIA-LSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLHAAARDGVRL 190
Query: 186 SLPDIFTVNSWVSPNATTR-SRSNAKSSPEGT 216
L + + W NAT R R + P G+
Sbjct: 191 PLLECLPLTEW---NATPRIGRQPSGGYPSGS 219
>gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
Length = 497
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 2 GPTQDRSEIAFFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE 58
GP Q D ETT + G R I+E GAI + +KL +H Y +PE
Sbjct: 268 GPRQ-----LILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPE 314
Query: 59 LISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
SV+ +GIT + +V P +A+IADT+F+ L G HN FD + F +G
Sbjct: 315 KPVGDSVQVHGITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVG 373
Query: 119 RPA-PEPKGTIDSLALLTQR 137
PA E D+LAL +
Sbjct: 374 LPALSEVCEVTDTLALAKNK 393
>gi|429202913|ref|ZP_19194274.1| BRCA1 C-terminal domain protein [Streptomyces ipomoeae 91-03]
gi|428661558|gb|EKX61053.1| BRCA1 C-terminal domain protein [Streptomyces ipomoeae 91-03]
Length = 414
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVETT R + I+ + + E H Y+ + DP V +G+
Sbjct: 102 AVVDVETTGLARDDR---IISAAVYRLDARGEVEDHWYTVVNPERDPG-----PVWIHGL 153
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T D + +P F DIA+ L R+ HN + FD + I +A + AP + + +
Sbjct: 154 TSDVLEGAPLFRDIAEEFASRLADRVLVAHNAV-FDWSMIAREYARVEIEAPV-RQRLCT 211
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
+A L++ G + K+ +LA +FG+ QQ H +LDD R+ E +
Sbjct: 212 IA-LSKELGLPLPNHKLETLAAHFGVVQQRAHHALDDARVLAEAFR 256
>gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|445451861|ref|ZP_21444854.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-A-92]
gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|444754904|gb|ELW79509.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-A-92]
gi|452947140|gb|EME52630.1| hypothetical protein G347_17404 [Acinetobacter baumannii MSP4-16]
Length = 459
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|365153186|ref|ZP_09349628.1| exonuclease, DNA polymerase III, epsilon subunit [Campylobacter sp.
10_1_50]
gi|363652095|gb|EHL91143.1| exonuclease, DNA polymerase III, epsilon subunit [Campylobacter sp.
10_1_50]
Length = 267
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELISSLSVRC 67
E D+ETT T GQ I+E GAI + K E+ + + V + PE I+ L+
Sbjct: 75 EFCVVDIETTGGTTNGQ---IIEIGAIKM--KNGTEIGRFESFVAASVVPENITELT--- 126
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GI +V +P ++ + L ++ HN+ FD I + EIG G
Sbjct: 127 -GIKASDLVGAPNLLNVLERFKIFLGTSVFIAHNV-NFDYGFISHSLNEIGL------GI 178
Query: 128 IDSLALLTQRFGRR---AGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
+ + L T RR + + SL G+ HR+L+D E+ K C T L
Sbjct: 179 LLNRKLCTIDLSRRTIASQKYGLGSLKELLGINNTHHRALNDAIAAAEIFKVCLTRL 235
>gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013150]
gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013113]
gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6014059]
gi|384142489|ref|YP_005525199.1| hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013150]
gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013113]
gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6014059]
gi|347592982|gb|AEP05703.1| conserve hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
Length = 497
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 2 GPTQDRSEIAFFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE 58
GP Q D ETT + G R I+E GAI + +KL +H Y +PE
Sbjct: 268 GPRQ-----LILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPE 314
Query: 59 LISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
SV+ +GIT + +V P +A+IADT+F+ L G HN FD + F +G
Sbjct: 315 KPVGDSVQVHGITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVG 373
Query: 119 RPA-PEPKGTIDSLALLTQR 137
PA E D+LAL +
Sbjct: 374 LPALSEVCEVTDTLALAKNK 393
>gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
hilgardii ATCC 8290]
gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
hilgardii ATCC 8290]
Length = 945
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLS 64
++ A D+ETT T I++F LV K+ E Y + + P PE I
Sbjct: 4 KTTYAVVDIETT-GTDMSVDNRIIQFSCTLVAHGKIVE--TYVSDINPQREVPERI---- 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
++ GITP+ + +PTF ++ ++ +L G ++ HN+ FD + F +G P +
Sbjct: 57 IQLTGITPERLKKAPTFDQVSSKLYKLLSGTVFVAHNV-NFDFPFLNGEFQRVGYPELDI 115
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGL 156
+ ID++ L+Q ++ L+TYF +
Sbjct: 116 EA-IDTVT-LSQILLPTLSSYRLQDLSTYFNI 145
>gi|410453939|ref|ZP_11307882.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus bataviensis LMG 21833]
gi|409932619|gb|EKN69577.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus bataviensis LMG 21833]
Length = 933
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 14 DVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCNG 69
D+ETT +P + G R I++F A+++ K+ E +S+L+ P A P I L+ G
Sbjct: 9 DLETTGNLP-KKGDR--IIQFAAVVIENGKITE--KFSSLLNPKKAIPPFIEELT----G 59
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
I D V +P F++IA+ V +L G + HN+L FD + ++E E G
Sbjct: 60 INDDMVKGAPLFSEIAEKVTSLLDGAYFVAHNVL-FDLSFLQEELIEAG 107
>gi|325103921|ref|YP_004273575.1| DNA polymerase III subunit epsilon [Pedobacter saltans DSM 12145]
gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
Length = 459
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 23/171 (13%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISS 62
+ R A D+ETT G R + A+L+ ++ + Y TL+ P P I
Sbjct: 2 EGRKNYAIVDIETTGAYAGGSRMTEI---AVLI-HDGVQVVEEYHTLINPKQSIPHYIQV 57
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
L+ GI+ D V +P F ++A VF +L +I+ HN+ FD + + E G
Sbjct: 58 LT----GISDDMVSDAPEFENVAAKVFSLLQDKIFVAHNV-GFDYSFVHSQLRECGYYLR 112
Query: 123 EPKGTIDSLALLTQRFGRRAG----DMKMASLATYFGLG-QQTHRSLDDVR 168
PK L T R R+ + L G+ HR+ D R
Sbjct: 113 SPK-------LCTVRLSRKCFPGLPSYSLGKLCQSLGIAINDRHRAYGDAR 156
>gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
buchneri ATCC 11577]
gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
buchneri ATCC 11577]
Length = 945
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLS 64
++ A D+ETT T I++F LV K+ E Y + + P PE I
Sbjct: 4 KTTYAVVDIETT-GTDMSVDNRIIQFSCTLVAHGKIVE--TYVSDINPQREVPERI---- 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
++ GITP+ + +PTF ++ ++ +L G ++ HN+ FD + F +G P +
Sbjct: 57 IQLTGITPERLKKAPTFDQVSSKLYKLLSGTVFVAHNV-NFDFPFLNGEFQRVGYPELDI 115
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGL 156
+ ID++ L+Q ++ L+TYF +
Sbjct: 116 EA-IDTVT-LSQILLPTLSSYRLQDLSTYFNI 145
>gi|377809744|ref|YP_005004965.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Pediococcus claussenii ATCC BAA-344]
gi|361056485|gb|AEV95289.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Pediococcus claussenii ATCC BAA-344]
Length = 926
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT G+ I++ G + ++ + YS+ V P + ++ R GI
Sbjct: 7 AVVDLETTGNDMNGEN-RIIQIGCTFIENGRI--VDEYSSDVNPERS--VPAMITRLTGI 61
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T + V ++P F+DIA VF +L G + HN+ FD + + F G P+ + ID+
Sbjct: 62 TQERVDTAPKFSDIAGKVFAMLQGTNFVAHNV-NFDFPFLNDEFMRSGYPSLDTPA-IDT 119
Query: 131 LALLTQRFGRRAGDMKMASLATYFGL 156
+ L F + G ++ L Y G+
Sbjct: 120 VTLSQVIFAKAPG-YRLRDLTHYLGI 144
>gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
gi|407714278|ref|YP_006834843.1| DNA polymerase III subunit epsilon [Burkholderia phenoliruptrix
BR3459a]
gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
gi|407236462|gb|AFT86661.1| DNA polymerase III subunit epsilon [Burkholderia phenoliruptrix
BR3459a]
Length = 244
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--IIEVGCVELVNRRLTGNNLHFYINPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA+IAD D + G HN FD + FA +G P +
Sbjct: 58 GLTTEFLSDKPKFAEIADEFRDFIQGADLIIHNA-PFDIGFLDAEFALLGLPPVSTHCGE 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+LA Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 IIDTLARAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|401762404|ref|YP_006577411.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400173938|gb|AFP68787.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 243
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+++ R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFLDYIKGAELIIHNA-SFDIGFMDYEFSKLHRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059]
Length = 438
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 2 GPTQDRSEIAFFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE 58
GP Q D ETT + G R I+E GAI + +KL +H Y +PE
Sbjct: 209 GPRQ-----LILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPE 255
Query: 59 LISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
SV+ +GIT + +V P +A+IADT+F+ L G HN FD + F +G
Sbjct: 256 KPVGDSVQVHGITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVG 314
Query: 119 RPA-PEPKGTIDSLALLTQR 137
PA E D+LAL +
Sbjct: 315 LPALSEVCEVTDTLALAKNK 334
>gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter baumannii AYE]
gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
gi|213156097|ref|YP_002318517.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii AB0057]
gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
AB307-0294]
gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056]
gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058]
gi|384131074|ref|YP_005513686.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii 1656-2]
gi|385236816|ref|YP_005798155.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii
TCDC-AB0715]
gi|387124633|ref|YP_006290515.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii MDR-TJ]
gi|407932156|ref|YP_006847799.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii TYTH-1]
gi|416149170|ref|ZP_11602731.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB210]
gi|417546648|ref|ZP_12197734.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC032]
gi|417567921|ref|ZP_12218787.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC189]
gi|417571711|ref|ZP_12222565.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Canada BC-5]
gi|417578804|ref|ZP_12229637.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Naval-17]
gi|417869349|ref|ZP_12514340.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH1]
gi|417872816|ref|ZP_12517706.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH2]
gi|417877392|ref|ZP_12522106.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH3]
gi|417883514|ref|ZP_12527751.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH4]
gi|421203374|ref|ZP_15660514.1| ribonuclease HI [Acinetobacter baumannii AC12]
gi|421536201|ref|ZP_15982451.1| ribonuclease HI [Acinetobacter baumannii AC30]
gi|421622720|ref|ZP_16063618.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC074]
gi|421630852|ref|ZP_16071549.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC180]
gi|421643553|ref|ZP_16084047.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-235]
gi|421646141|ref|ZP_16086593.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-251]
gi|421656494|ref|ZP_16096800.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-72]
gi|421660486|ref|ZP_16100676.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-83]
gi|421666986|ref|ZP_16107068.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC087]
gi|421669661|ref|ZP_16109680.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC099]
gi|421686491|ref|ZP_16126243.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-143]
gi|421700078|ref|ZP_16139595.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-58]
gi|421702938|ref|ZP_16142409.1| hypothetical protein B825_06716 [Acinetobacter baumannii ZWS1122]
gi|421709193|ref|ZP_16148555.1| hypothetical protein B837_18845 [Acinetobacter baumannii ZWS1219]
gi|421790518|ref|ZP_16226723.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-2]
gi|421795919|ref|ZP_16231993.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-21]
gi|421801698|ref|ZP_16237655.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Canada BC1]
gi|424053146|ref|ZP_17790678.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab11111]
gi|424064515|ref|ZP_17802000.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab44444]
gi|425754873|ref|ZP_18872706.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-113]
gi|445400985|ref|ZP_21430286.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-57]
gi|445468926|ref|ZP_21450989.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC338]
gi|445483174|ref|ZP_21456377.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Naval-78]
gi|445486931|ref|ZP_21457552.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii AA-014]
gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
,epsilon subunit, 3-5 exonucleolytic proofreading
function] [Acinetobacter baumannii AYE]
gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
AB0057]
gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
AB307-0294]
gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
1656-2]
gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
TCDC-AB0715]
gi|333364586|gb|EGK46600.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB210]
gi|342230912|gb|EGT95734.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH1]
gi|342233050|gb|EGT97804.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH2]
gi|342235720|gb|EGU00298.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH4]
gi|342235812|gb|EGU00376.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH3]
gi|385879125|gb|AFI96220.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
MDR-TJ]
gi|395558245|gb|EJG24242.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC189]
gi|395567942|gb|EJG28616.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Naval-17]
gi|398327122|gb|EJN43260.1| ribonuclease HI [Acinetobacter baumannii AC12]
gi|400207279|gb|EJO38249.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Canada BC-5]
gi|400384536|gb|EJP43214.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC032]
gi|404568201|gb|EKA73306.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-143]
gi|404570460|gb|EKA75533.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-58]
gi|404670676|gb|EKB38562.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab11111]
gi|404673251|gb|EKB41050.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab44444]
gi|407188484|gb|EKE59730.1| hypothetical protein B837_18845 [Acinetobacter baumannii ZWS1219]
gi|407193314|gb|EKE64481.1| hypothetical protein B825_06716 [Acinetobacter baumannii ZWS1122]
gi|407900737|gb|AFU37568.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii TYTH-1]
gi|408505180|gb|EKK06906.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-72]
gi|408508236|gb|EKK09922.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-235]
gi|408517528|gb|EKK19066.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-251]
gi|408694554|gb|EKL40124.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC074]
gi|408696625|gb|EKL42157.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC180]
gi|408704271|gb|EKL49642.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-83]
gi|409985868|gb|EKO42071.1| ribonuclease HI [Acinetobacter baumannii AC30]
gi|410386458|gb|EKP38929.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC087]
gi|410388046|gb|EKP40486.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC099]
gi|410400746|gb|EKP52913.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-21]
gi|410404955|gb|EKP57008.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Canada BC1]
gi|410406071|gb|EKP58096.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-2]
gi|425495816|gb|EKU61985.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-113]
gi|444768871|gb|ELW93076.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Naval-78]
gi|444769158|gb|ELW93355.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii AA-014]
gi|444774567|gb|ELW98644.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC338]
gi|444783112|gb|ELX06974.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-57]
Length = 459
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|421651165|ref|ZP_16091536.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC0162]
gi|425749509|ref|ZP_18867486.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-348]
gi|445456437|ref|ZP_21445883.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC047]
gi|408508567|gb|EKK10248.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC0162]
gi|425488855|gb|EKU55180.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-348]
gi|444778383|gb|ELX02401.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC047]
Length = 459
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|226356768|ref|YP_002786508.1| DNA polymerase III subunit epsilon [Deinococcus deserti VCD115]
gi|226318758|gb|ACO46754.1| putative DNA-directed DNA polymerase (DNA polymerase III, epsilon
subunit) [Deinococcus deserti VCD115]
Length = 202
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 25/150 (16%)
Query: 10 IAFFDVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPE----LISSL 63
+ FD+ETT P R G I+E GA+ V ++ E Y TLVRP + +I
Sbjct: 3 VVVFDLETTGLSPERDG----IVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWH 58
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR---P 120
+ R +GI+ + V S+PT ++ + + HN+ FDC +R +G P
Sbjct: 59 AQRVHGISNEMVRSAPTIEEVLPEFLEFVGDSAVVAHNV-GFDCGFMRAQARRLGMVWAP 117
Query: 121 APE-----------PKGTIDSLALLTQRFG 139
A E PK +L +L +R G
Sbjct: 118 AGEHCTVQLSRRAFPKERAHNLTVLAERLG 147
>gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638]
gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
Length = 245
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGRNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD + ++G HN FD + F+++ R P+
Sbjct: 69 HGIADEFLLDKPTFADVADEFIEYINGAELVIHNA-SFDIGFMDYEFSKLNRNIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + + G+R
Sbjct: 128 CKVTDSLALARKMYPGKR 145
>gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900]
gi|421677691|ref|ZP_16117582.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC111]
gi|410393027|gb|EKP45382.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC111]
Length = 459
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|421624925|ref|ZP_16065785.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC098]
gi|421661347|ref|ZP_16101523.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC110]
gi|421696113|ref|ZP_16135703.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-692]
gi|421807622|ref|ZP_16243482.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC035]
gi|404563049|gb|EKA68260.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-692]
gi|408700118|gb|EKL45582.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC098]
gi|408715759|gb|EKL60881.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC110]
gi|410416603|gb|EKP68375.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC035]
Length = 459
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|421187339|ref|ZP_15644699.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB419]
gi|399969138|gb|EJO03561.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB419]
Length = 489
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA--DPELISSL 63
+ S + D+ETT P + G I++ G V K+ ++N+ T+V P PE I L
Sbjct: 3 ENSTFSIVDLETTAPFKEGGH--IIQIGISFVKNWKI--INNFQTMVNPGVKIPEQIVDL 58
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI 117
+ GI + V ++P F D+A + D L G ++ HN+ R+D + FA I
Sbjct: 59 T----GIKNEDVENAPYFEDLARMIHDQLSGTVFVAHNV-RYDFPYLNGEFARI 107
>gi|420376713|ref|ZP_14876434.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1235-66]
gi|391301670|gb|EIQ59553.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1235-66]
Length = 225
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 29 ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIAD 86
I+E GA+ V ++L H Y R DPE +GI + ++ PTFAD+AD
Sbjct: 13 IIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----VHGIADEFLLDKPTFADVAD 67
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK---GTIDSLALLTQRF-GRR 141
D + G HN FD + FA++ R P+ DSLAL + F G+R
Sbjct: 68 EFLDYIRGAELVIHNA-SFDIGFMDYEFAKLHRDIPKTNTFCKVTDSLALARKMFPGKR 125
>gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
Length = 459
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1]
gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
gi|419757642|ref|ZP_14283973.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB304]
gi|419857631|ref|ZP_14380336.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB202]
gi|419858351|ref|ZP_14381024.1| Rad3-related DNA helicase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184985|ref|ZP_15642399.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB318]
gi|421187217|ref|ZP_15644593.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB418]
gi|421189780|ref|ZP_15647094.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB422]
gi|421190763|ref|ZP_15648047.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB548]
gi|421193717|ref|ZP_15650963.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB553]
gi|421194810|ref|ZP_15652026.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB568]
gi|421196012|ref|ZP_15653204.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB576]
gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus
oeni PSU-1]
gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
gi|399905600|gb|EJN93037.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB304]
gi|399964044|gb|EJN98699.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB418]
gi|399965432|gb|EJO00005.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB318]
gi|399971876|gb|EJO06115.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB553]
gi|399972870|gb|EJO07069.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB422]
gi|399973459|gb|EJO07624.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB548]
gi|399977203|gb|EJO11194.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB568]
gi|399978166|gb|EJO12127.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB576]
gi|410497615|gb|EKP89086.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB202]
gi|410498787|gb|EKP90232.1| Rad3-related DNA helicase [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 489
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA--DPELISSL 63
+ S + D+ETT P + G I++ G V K + ++N+ T+V P PE I L
Sbjct: 3 ENSTFSIVDLETTAPFKEGGH--IIQIGISFV--KNWKIINNFQTMVNPGVKIPEQIVDL 58
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI 117
+ GI + V ++P F D+A + D L G ++ HN+ R+D + FA I
Sbjct: 59 T----GIKNEDVENAPYFEDLARMIHDQLSGTVFVAHNV-RYDFPYLNGEFARI 107
>gi|417552985|ref|ZP_12204055.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-81]
gi|417563225|ref|ZP_12214104.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC137]
gi|421198333|ref|ZP_15655499.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC109]
gi|421454528|ref|ZP_15903875.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-123]
gi|421634687|ref|ZP_16075301.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-13]
gi|421805528|ref|ZP_16241410.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-A-694]
gi|395525807|gb|EJG13896.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC137]
gi|395566020|gb|EJG27666.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC109]
gi|400212318|gb|EJO43277.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-123]
gi|400393244|gb|EJP60290.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-81]
gi|408704220|gb|EKL49593.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-13]
gi|410408603|gb|EKP60561.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-A-694]
Length = 459
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
Length = 382
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT + R I E G + V P + +S+L+ P P I S + G
Sbjct: 15 IVFVDLETTGGSTSEHR--ITEVGVVEVGPTGVT---RWSSLIDPQQP--IPSFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT D V +PTF IA +++ L+G+++ HN FD +R F G
Sbjct: 68 ITNDMVHGAPTFESIAPALYERLNGKLFVAHNA-SFDRGFLRSEFRRAG 115
>gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter baumannii SDF]
gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
,epsilon subunit, 3-5 exonucleolytic proofreading
function] [Acinetobacter baumannii]
Length = 459
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|56477410|ref|YP_158999.1| excinuclease complex nuclease subunit Cho [Aromatoleum aromaticum
EbN1]
gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog
protein) [Aromatoleum aromaticum EbN1]
Length = 469
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+ DVETT R + E + + ++ E + + +LV P P I +L R G
Sbjct: 7 LVLIDVETTGANPVSDR--VTEIAVLRI--ERGEIVGRWESLVNPERP--IPALIQRLVG 60
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
IT + V +PTFA++AD+V L G ++ HN RFD IR F+ +G+
Sbjct: 61 ITDEMVAGAPTFAELADSVRGHLDGAVFVAHNA-RFDYGFIRNEFSRLGQ 109
>gi|421789662|ref|ZP_16225911.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-82]
gi|424060619|ref|ZP_17798110.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab33333]
gi|404668571|gb|EKB36480.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab33333]
gi|410397901|gb|EKP50138.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-82]
Length = 459
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|421674461|ref|ZP_16114392.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC065]
gi|421692975|ref|ZP_16132624.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-116]
gi|404559238|gb|EKA64503.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-116]
gi|410384310|gb|EKP36822.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC065]
Length = 459
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|365902782|ref|ZP_09440605.1| Rad3-related DNA helicase [Lactobacillus malefermentans KCTC 3548]
Length = 950
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 11 AFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA----DPELISSLSV 65
A D+ETT G R I++ G + V K+ ++++ST + P DP V
Sbjct: 8 AVVDLETTGTSLTEGGR--IIQIGCVFVKNNKI--INHFSTDINPEMSIPDP------IV 57
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
R GIT V +P F D+A+ V+ +L G + HN+ FD I F +G P P
Sbjct: 58 RLTGITNKRVAKAPIFDDVAEVVYGLLTGTTFVAHNV-NFDFPFINREFERVGFP-PLDI 115
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLD 165
+D++ L+Q A ++ L+ F + S D
Sbjct: 116 PAVDTVQ-LSQILLPTATSYRLQDLSHLFNISHHNPHSAD 154
>gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185]
gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185]
Length = 221
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
R A DVET+ R ++E + P E +S+LVR + V
Sbjct: 12 RRGFAVVDVETS--GLDPLRHRVIEVAVTQLTPSGGLE-REWSSLVRARG----GTGPVH 64
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
+G++ V +P FAD+ D + ++L GRI HN FD A + GR P
Sbjct: 65 IHGLSDYDVRDAPGFADLVDELSELLDGRILVAHNAA-FDWAFLAAEARRAGRELPV--- 120
Query: 127 TIDSLALLTQRFGRR----AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYC 177
S L T R ++++ +LA Y+ + + HR+ DDVR+ +EVL+ C
Sbjct: 121 ---SERLCTWHLARGLELPTDNLRLGTLAEYWSIPVENAHRAGDDVRVLVEVLRRC 173
>gi|104774090|ref|YP_619070.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103423171|emb|CAI97964.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
Length = 261
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 24/164 (14%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT G++ I++ GA+ V + + + +ST V P E I+ GI+
Sbjct: 11 FDLETT-----GKK--IIQIGALKV--RDDQTVAKFSTYVNPL--EKINDYVSHLTGISN 59
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
++P ++ D + GHNIL FDC A+ G P PK +D+L
Sbjct: 60 YQTDAAPLIDEVMPDFLDFVGDDTLVGHNILSFDC----NVLADNGYPVANPK--LDTL- 112
Query: 133 LLTQRFGRRAG------DMKMASLATYFGLGQQTHRSLDDVRMN 170
LL + +R ++++++L Y+G+ H ++ D N
Sbjct: 113 LLANSYKKRGLFADPIPNVRLSTLKEYYGININFHIAISDCITN 156
>gi|441512147|ref|ZP_20993992.1| DNA polymerase III epsilon subunit [Gordonia amicalis NBRC 100051]
gi|441453114|dbj|GAC51953.1| DNA polymerase III epsilon subunit [Gordonia amicalis NBRC 100051]
Length = 621
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 29/197 (14%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+ + D+ETT G R I E GA+ + + E + ++TLV P P I V
Sbjct: 48 TTLVVVDLETTGSDPAGDR--ITEIGAVKI--RGGEVIGEFATLVDPGRP--IPPQIVTL 101
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT V +P + + G I HN RFD +R+ + P
Sbjct: 102 TGITTAMVTDAPRIESVLPAFLEFARGAILVAHNA-RFDMGFLRQNALRLHLDWPF---- 156
Query: 128 IDSLALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL------ 174
SL+L T RR A +K+++LA F + + THR+LDD R +EV
Sbjct: 157 --SLSLCTVTMARRILSRDEAPTVKLSALADLFDVSVRPTHRALDDARATVEVFHRLLER 214
Query: 175 ---KYCATVLFLESSLP 188
+ ATV L S LP
Sbjct: 215 VGNQGIATVGELTSYLP 231
>gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30]
gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10]
gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30]
gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10]
Length = 918
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT R I++FG +LV K+ ++ ++ + P IS R I
Sbjct: 6 AVVDLETTGTDSTIDR--IIQFGCVLVQDGKI--INRFAADINP--DRRISKQIQRLTHI 59
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V +P F DIADT++++L I+ HNI FD + F G P G ID+
Sbjct: 60 TNQQVSKAPYFEDIADTIYNLLSNTIFVAHNIY-FDYHFLSNEFVRCGLPPLSIPG-IDT 117
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCATVL 181
+ L Q F ++ LA G H++ D + + Y ++
Sbjct: 118 VE-LAQVFLPTESSFRLGDLADSIGFRHDNPHQADSDAEVTAALFLYIEAIM 168
>gi|433449434|ref|ZP_20412298.1| ATP-dependent helicase DinG [Weissella ceti NC36]
gi|429538948|gb|ELA06986.1| ATP-dependent helicase DinG [Weissella ceti NC36]
Length = 941
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT + R I++ V K+ ++ YSTL+ P I V+ GI
Sbjct: 8 AVVDLETTQTSTETGR--IIQIAIAFVQNNKI--INQYSTLINPGMA--IPRHVVQLTGI 61
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
V S+P F D+A V +L G ++ HN+ FD + F +G P ID+
Sbjct: 62 DASMVKSAPNFEDVAHMVHAMLQGTVFVAHNV-NFDWPFLNAEFERVGL-TPLTGQAIDT 119
Query: 131 LALLTQRFGRRAGDMKMASLATYFGL 156
+ L+Q A ++ +A Y G+
Sbjct: 120 VT-LSQMLYPTAPGYRLIDMAQYLGI 144
>gi|417551326|ref|ZP_12202404.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-18]
gi|417563743|ref|ZP_12214617.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC143]
gi|395555499|gb|EJG21500.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC143]
gi|400385781|gb|EJP48856.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-18]
Length = 459
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE SV+ +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGDSVQVH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GIT + +V P +A+IADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GITDEFLVDKPKYAEIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|423635620|ref|ZP_17611273.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD156]
gi|401276810|gb|EJR82755.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD156]
Length = 315
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH ++ HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTKVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
1100]
gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
DSM 1100]
Length = 463
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 23/177 (12%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLS 64
+ + A DVETT R I+E ++ ++ L ++ +L+ P P I+ L+
Sbjct: 2 KKKYAIIDVETT--GGKASRDRIIEIAVVIHDGNQI--LESWESLINPETLIPWNITILT 57
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
GI V ++P F ++A + ++ G I+ HN RFD + I E F +G
Sbjct: 58 ----GINDQMVANAPKFYEVARKIVELTEGAIFVAHNA-RFDYSFIGEEFKRLGY----- 107
Query: 125 KGTIDSLALLTQRFGRRA----GDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKY 176
T L T R R+ + +L+ +F + Q HR++ DV+ ++VL+Y
Sbjct: 108 --TYTRKQLCTLRLARQTLPGLYAYGLDALSRHFNIHNQARHRAMGDVQATIKVLEY 162
>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
Length = 331
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 14/175 (8%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELIS 61
PT A DVETT R + + A+ + E ++ TLV P DP
Sbjct: 15 PTAYPQGYAVVDVETTGLARDDRIIS----AAVYRLDARGEVEDHWYTLVNPERDPG--- 67
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
V +G+T D + +P F DIA L R+ HN + FD + I +A A
Sbjct: 68 --PVWIHGLTSDVLEGAPLFRDIAQEFSARLADRVLVAHNAV-FDWSMIAREYARAETEA 124
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
P + + ++A L++ G + K+ SLA +FG+ QQ H +LDD R+ E +
Sbjct: 125 PV-RQRLCTIA-LSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFR 177
>gi|295677150|ref|YP_003605674.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1002]
gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
Length = 244
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ILE G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARGGDR--ILELGCVELVNRRLTGNNLHFYINPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA+I D D + G HN FD + FA +G P +
Sbjct: 58 GLTTEFLSDKPKFAEIIDQFRDFIQGADLIIHNA-PFDIGFLDAEFALLGLPPVSTHCGE 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+LA Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 IIDTLAQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
Length = 318
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHANVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ ++A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--LPEPKNKVIDTVFLAKKYMKQAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 167 VYQKCAAI 174
>gi|440288991|ref|YP_007341756.1| DNA polymerase III, epsilon subunit [Enterobacteriaceae bacterium
strain FGI 57]
gi|440048513|gb|AGB79571.1| DNA polymerase III, epsilon subunit [Enterobacteriaceae bacterium
strain FGI 57]
Length = 246
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHFYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTF +IAD D + G HN FD + F ++ R P+
Sbjct: 69 HGIADEFLLDKPTFGEIADEFMDYIRGAELVIHNA-SFDIGFMDYEFGKLNRGIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 589
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 15/173 (8%)
Query: 9 EIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
E+ F D+ETT +PG +I E GA+ V + E + +STLV P P I +
Sbjct: 41 EVTFVVVDLETTG-AKPGPE-SITEIGAVKV--RGGETVGEFSTLVNPGQP--IPAFITS 94
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHG---RIWAGHNILRFDCARIREAFAEIGRPAPE 123
GIT +P A + ++ + L + A HN RFD ++ AFA P
Sbjct: 95 LTGITTAMTARAPRIAAVIPSLIEFLCAGPSTVVAAHNA-RFDVGHLKAAFAGADFTWPS 153
Query: 124 PKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+ +D++AL + F + K+++LA G HR+LDD R ++VL
Sbjct: 154 VR-VLDTVALARRAFSSDEVPNFKLSTLAGACGATTAPNHRALDDARATVDVL 205
>gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91]
Length = 346
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AF D+ETT + R I E G ++V ++TLV P P I + G
Sbjct: 15 LAFVDLETTGGSAAEHR--ITEIGVVVVNANGTS---TWTTLVDPQQP--IPPFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTFADIA +F+ L G+++ HN FD +R F G
Sbjct: 68 ITDAMVRGAPTFADIAGALFERLDGKLFVAHNA-SFDRGFLRAEFERAG 115
>gi|425734098|ref|ZP_18852418.1| hypothetical protein C272_03140 [Brevibacterium casei S18]
gi|425482538|gb|EKU49695.1| hypothetical protein C272_03140 [Brevibacterium casei S18]
Length = 584
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 9 EIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
E+ F D+ETT T G I E GA+ + + E + + +LV+P + +IS R
Sbjct: 31 EVTFVVVDLETT-GTHSGTS-EITEIGAVKL--RGGEVIGEFQSLVKP-EHSVISPFVSR 85
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
GIT V +P+ + + + G + HN FD +R A + P+P+
Sbjct: 86 LTGITHAMVDDAPSIRSVLPSFLEFAVGAVLVAHNA-PFDIGFLRSACERLDYHWPQPQ- 143
Query: 127 TIDSLALLTQRFGR-RAGDMKMASLATYFG-LGQQTHRSLDDVRMNLEVL 174
+D++ L + GR + K+ +LA +FG + + HR+L D R EVL
Sbjct: 144 VLDTVTLSRRVLGRDEVRNHKLGTLAAHFGTVVEPDHRALSDARATGEVL 193
>gi|410624035|ref|ZP_11334843.1| DNA polymerase III subunit epsilon [Glaciecola pallidula DSM 14239
= ACAM 615]
gi|410156375|dbj|GAC30217.1| DNA polymerase III subunit epsilon [Glaciecola pallidula DSM 14239
= ACAM 615]
Length = 725
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 23/163 (14%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCN 68
A D+ETT Q I E G + + E + + +L+ P P I+SL+
Sbjct: 558 AVIDIETT--GGKAQHHRITEVGIVKMIGG--EVVAQWQSLINPQRRIPHNITSLT---- 609
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI D V +P FA++AD + + G ++ HN+ FD I+E F + R PK
Sbjct: 610 GIDNDMVAEAPLFAEVADDIDEFTQGCVFVAHNV-NFDYGFIKEEFNRLERHFRRPK--- 665
Query: 129 DSLALLTQRFGRRAGD----MKMASLATYFGLG-QQTHRSLDD 166
L T R R+ +A+L +F + Q+ HR++ D
Sbjct: 666 ----LCTVREMRKHYKGLPSYSLANLTKHFSIDMQRHHRAMSD 704
>gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155]
gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155]
Length = 261
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I FFD+ETT R I+E I V P ++ + V P P ISS + G
Sbjct: 9 IVFFDLETTGLNPTEDR--IIEICCIKVHPDGKRDIK--TRRVNPEKP--ISSEASEITG 62
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT + V PTF +A ++ G +G+NI+RFD + E F G
Sbjct: 63 ITDEDVKDEPTFKQMAKGIYKFFEGCDISGYNIMRFDLRVLTEEFKRAG 111
>gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
AB-18-032]
gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
AB-18-032]
Length = 584
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT G I E GA+ V + EEL +TLV P P I GIT
Sbjct: 36 DLETTGGAPDGG--GITEIGAVKV--RGGEELGVLATLVNPGVP--IPPFITVLTGITEA 89
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
++ +P+ + + + + + HN +D ++ A A G P P+ +D+ AL
Sbjct: 90 MLLPAPSIEQVLPSFLEFVSDAVLVAHNA-PYDVGFLKAACARHGYRWPNPR-VLDTAAL 147
Query: 134 LTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+ R + K+ +LA YF THR+LDD R ++VL
Sbjct: 148 ARRVLLRDEVPNRKLGTLAAYFRAATTPTHRALDDARATVDVL 190
>gi|365848119|ref|ZP_09388598.1| DNA polymerase III, epsilon subunit [Yokenella regensburgei ATCC
43003]
gi|364571320|gb|EHM48911.1| DNA polymerase III, epsilon subunit [Yokenella regensburgei ATCC
43003]
Length = 243
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGRNFHVYLKPDRLVDPE-----AFNV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTF D+AD + + G HN FD + F ++ R P+
Sbjct: 66 HGIADEFLLDKPTFGDVADEFIEFIRGAELVIHNA-SFDIGFMDYEFGKLNRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
gi|451965868|ref|ZP_21919123.1| DNA polymerase III subunit epsilon [Edwardsiella tarda NBRC 105688]
gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
gi|451315117|dbj|GAC64485.1| DNA polymerase III subunit epsilon [Edwardsiella tarda NBRC 105688]
Length = 243
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQVGAHYEGHRIIEIGAVEVINRRLTGRNFHVYLKPDRLVDPE-----AFMV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PAPEPK 125
+GI+ D ++ P+FAD+ D + + G HN FD + FA++GR P E
Sbjct: 66 HGISDDFLLGQPSFADVVDEFLEFIRGAELVIHNA-PFDIGFMDYEFAKLGRDLPKTETF 124
Query: 126 GTI-DSLALLTQRF-GRR 141
TI DSL + + F G+R
Sbjct: 125 CTITDSLVMARRLFPGKR 142
>gi|157414745|ref|YP_001482001.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 81116]
gi|384441101|ref|YP_005657404.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni M1]
gi|415747597|ref|ZP_11476128.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Campylobacter jejuni subsp. jejuni 327]
gi|419634878|ref|ZP_14167202.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 55037]
gi|157385709|gb|ABV52024.1| exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni 81116]
gi|307747384|gb|ADN90654.1| DNA polymerase III, epsilon subunit [Campylobacter jejuni subsp.
jejuni M1]
gi|315931109|gb|EFV10083.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Campylobacter jejuni subsp. jejuni 327]
gi|380613924|gb|EIB33382.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 55037]
Length = 253
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ A + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|427392683|ref|ZP_18886688.1| exonuclease, DNA polymerase III, epsilon subunit [Alloiococcus
otitis ATCC 51267]
gi|425731193|gb|EKU94014.1| exonuclease, DNA polymerase III, epsilon subunit [Alloiococcus
otitis ATCC 51267]
Length = 925
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
+D + A D+E T + G +++F IL+ ++ E + TLV P P I
Sbjct: 2 EDPNLYAIVDIEATAGSL-GTDERMIQFACILLEDGQVVE--EFDTLVNPLRPVPIRI-- 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
+ GI+ V +P F +IA + D+L ++ HN+ FD + E F +G +
Sbjct: 57 QKLTGISQKEVNQAPHFDEIAHIIHDLLEDAVFVAHNV-NFDYRFLNERFEAVGLEPLQT 115
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVR 168
K ID++AL F +A + L T+ G +Q H +L D R
Sbjct: 116 KA-IDTVALSRICFP-QADHYNLTDLTTWLGYDIEQAHDALYDAR 158
>gi|383754985|ref|YP_005433888.1| putative DNA polymerase III subunit epsilon [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381367037|dbj|BAL83865.1| putative DNA polymerase III subunit epsilon [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 191
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 48 YSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDC 107
Y TL++P + + +V+ +GITP ++PTFA+I + L GRI HN RFD
Sbjct: 36 YYTLIQPPMNKY-NYFNVQIHGITPQDTKNAPTFAEIWPELKSHLEGRIVVAHNA-RFDM 93
Query: 108 ARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAG----DMKMASLATYFGLGQQTHRS 163
+ + A G AP+ D++A+ R+A + K+ ++ T+ + Q H +
Sbjct: 94 SVLSACLATEGLAAPD-FSYCDTVAI-----ARKAWPFLENHKLDTVGTHLHIDFQHHNA 147
Query: 164 LDDVR 168
+DD R
Sbjct: 148 MDDAR 152
>gi|417089795|ref|ZP_11955709.1| Rad3-related DNA helicase [Streptococcus suis R61]
gi|353533924|gb|EHC03563.1| Rad3-related DNA helicase [Streptococcus suis R61]
Length = 837
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M T+ + A D+E T G I++ G +LV + E + +Y+T + P EL+
Sbjct: 19 MKDTRTSNRYAVVDLEAT---GTGADAKIIQIGIVLV--ENGEIIDSYATDINPY--ELL 71
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + +P F +A T++D++ I+ HN+ +FD + EA G
Sbjct: 72 DDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYE 130
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
P+ +D++ L+Q F + +LA + LG Q H ++ D
Sbjct: 131 LLTPR--VDTVE-LSQLFFPTFDKYSLGNLAEHLDLGLDQAHTAISD 174
>gi|218904738|ref|YP_002452572.1| DNA polymerase III subunit epsilon [Bacillus cereus AH820]
gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH820]
Length = 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNYKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis
KBAB4]
gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis
KBAB4]
Length = 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH ++ HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTKVIVAHN-ASFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA V
Sbjct: 168 CAAV 171
>gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243]
gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243]
Length = 381
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AF D+ETT + R I E G ++V ++TLV P P I + G
Sbjct: 15 LAFVDLETTGGSAAEHR--ITEIGVVVVNANGTS---TWTTLVDPQQP--IPPFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTFADIA +F+ L G+++ HN FD +R F G
Sbjct: 68 ITDAMVRGAPTFADIAGALFERLDGKLFVAHNA-SFDRGFLRAEFERAG 115
>gi|357392585|ref|YP_004907426.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
KM-6054]
gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
KM-6054]
Length = 329
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 15/177 (8%)
Query: 2 GPTQDRSE-IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPEL 59
GP D A DVETT R + ++ G + P E ++ TLV P DP
Sbjct: 16 GPGGDAGRGFAVVDVETTGLGRSDR---VISAGVYQLDPDG-EITDHWYTLVNPQRDPG- 70
Query: 60 ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
V +G+T + + +PTF ++A + L R+ HN L FD I F+ G
Sbjct: 71 ----PVWIHGLTSEVLAGAPTFPEVAAEFAERLRDRVLVAHNAL-FDWNMISREFSRAGL 125
Query: 120 PAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
AP + + R G K++SLA +F + Q Q H +LDD R+ EV +
Sbjct: 126 RAPVEQRLCTMVLARDLRLPLPNG--KLSSLAAHFDVRQRQAHHALDDARVLAEVFR 180
>gi|222824026|ref|YP_002575600.1| DNA polymerase III subunit epsilon [Campylobacter lari RM2100]
gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
Length = 254
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 23/180 (12%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVR-PADPELIS 61
T+ + EI D+E+T + GQ ILE GA+ + + +E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCVVDIESTGGIKSGQ---ILEIGAVKI--QNYKEIDRFESFVKVESIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE--IGR 119
L+ GI+ D V ++P+ + + L I+ HN+ RFD I +A E G
Sbjct: 120 ELT----GISLDMVENAPSLKTVLNNFKLFLKDSIFVAHNV-RFDYHFISKAMYENDFGV 174
Query: 120 PAPEPKGTID--SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
TID + + ++G + +L + + + HR+L D E+LKYC
Sbjct: 175 LLNRRLCTIDLAKKCIESPKYG-------LDALKEFLCIESKHHRALSDALAASEILKYC 227
>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
Length = 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPVFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|378977116|ref|YP_005225257.1| DNA polymerase III [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386033286|ref|YP_005953199.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae KCTC
2242]
gi|419975993|ref|ZP_14491397.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419981716|ref|ZP_14496988.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987301|ref|ZP_14502423.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419993103|ref|ZP_14508050.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419999095|ref|ZP_14513875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420000904|ref|ZP_14515562.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420010735|ref|ZP_14525204.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013466|ref|ZP_14527777.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420018550|ref|ZP_14532747.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420027764|ref|ZP_14541753.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420033749|ref|ZP_14547549.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420035499|ref|ZP_14549163.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041834|ref|ZP_14555330.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420047897|ref|ZP_14561213.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056588|ref|ZP_14569742.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420062114|ref|ZP_14575093.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064726|ref|ZP_14577535.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420072459|ref|ZP_14585096.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420079141|ref|ZP_14591591.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420083019|ref|ZP_14595308.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421909407|ref|ZP_16339224.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421918167|ref|ZP_16347700.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424829086|ref|ZP_18253814.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|428151686|ref|ZP_18999395.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428931277|ref|ZP_19004876.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae JHCK1]
gi|428938858|ref|ZP_19011978.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae VA360]
gi|449046974|ref|ZP_21730663.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae hvKP1]
gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|339760414|gb|AEJ96634.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae KCTC
2242]
gi|364516527|gb|AEW59655.1| DNA polymerase III [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397341771|gb|EJJ34944.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397342289|gb|EJJ35452.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397345242|gb|EJJ38368.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397358897|gb|EJJ51606.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397359290|gb|EJJ51989.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397373119|gb|EJJ65591.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397377938|gb|EJJ70158.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397380415|gb|EJJ72600.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397390507|gb|EJJ82417.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397392901|gb|EJJ84677.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397394204|gb|EJJ85939.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397408235|gb|EJJ99611.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397416737|gb|EJK07910.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397418371|gb|EJK09530.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397420384|gb|EJK11461.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397429095|gb|EJK19819.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397433432|gb|EJK24082.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397438978|gb|EJK29443.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444096|gb|EJK34387.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451665|gb|EJK41746.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|410116683|emb|CCM81849.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410119494|emb|CCM90325.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414706503|emb|CCN28207.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426304893|gb|EKV67026.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae VA360]
gi|426308304|gb|EKV70371.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae JHCK1]
gi|427538318|emb|CCM95533.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448877583|gb|EMB12545.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae hvKP1]
Length = 243
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + F+++ R + +
Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYIRGAELVIHNA-SFDIGFMDYEFSKLNRGIGKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
Tu4000]
gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
Tu4000]
Length = 314
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 103/257 (40%), Gaps = 23/257 (8%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M P A DVETT R + I+ + + E H Y+T+ DP
Sbjct: 1 MWPAAYPQGYAVVDVETTGLARDDR---IISAAVYRLDARGEVEDHWYTTVNPERDPG-- 55
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
V +G+T D + +P F D+A L GR+ HN + FD I +A
Sbjct: 56 ---PVWIHGLTSDVLEGAPLFKDVAAEFAARLEGRVLVAHNAV-FDWQMIAREYARARGE 111
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK---Y 176
AP + + ++A L++ + K+ SLA +FG+ Q + H +LDD R+ E +
Sbjct: 112 APV-RQRLCTIA-LSKELKLPLPNHKLESLAAHFGVVQRRAHHALDDARVLAEAFRPSLR 169
Query: 177 CATVLFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSK---FKFENAS 233
A + L + + W T R R ++ P G PS K + N
Sbjct: 170 AAAAGGVRLPLHECRPLTEW-----TERPRIGQQAGPGGYRPASWRPSRKRPACPYPNPG 224
Query: 234 NASPPDQGKEEIHPIFS 250
P + K+ + FS
Sbjct: 225 RYEPGGRLKQGMRVAFS 241
>gi|385208477|ref|ZP_10035345.1| exonuclease, DNA polymerase III, epsilon subunit family
[Burkholderia sp. Ch1-1]
gi|385180815|gb|EIF30091.1| exonuclease, DNA polymerase III, epsilon subunit family
[Burkholderia sp. Ch1-1]
Length = 383
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT + R I E G + V P + +S+LV P P I S + G
Sbjct: 15 IVFVDLETTGGSTAEHR--ITEVGVVEVGPAGVS---RWSSLVDPQQP--IPSFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTF IA +F+ L+G+++ HN FD +R F +G
Sbjct: 68 ITNAMVRGAPTFEAIAPALFERLNGKLFVAHNA-SFDRGFLRGEFRRVG 115
>gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
2_A_57_CT2]
gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
2_A_57_CT2]
Length = 933
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT P + I++F A+++ K+ E YS+LV P P I L+ G++
Sbjct: 9 DLETT-GNAPKKGDKIIQFAAVVIENGKITE--EYSSLVNPEQSIPPFIEELT----GLS 61
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
+ V ++P F++IA V +L G + HN+L FD + ++E E G
Sbjct: 62 DEMVENAPLFSEIAPKVLTLLEGAYFVAHNVL-FDLSFLQEELIEAG 107
>gi|418380248|ref|ZP_12966237.1| DNA polymerase/helicase [Burkholderia pseudomallei 354a]
gi|418557421|ref|ZP_13122016.1| DNA polymerase/helicase [Burkholderia pseudomallei 354e]
gi|385365063|gb|EIF70760.1| DNA polymerase/helicase [Burkholderia pseudomallei 354e]
gi|385377550|gb|EIF82116.1| DNA polymerase/helicase [Burkholderia pseudomallei 354a]
Length = 381
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AF D+ETT + R I E G ++V ++TLV P P I + G
Sbjct: 15 LAFVDLETTGGSAAEHR--ITEIGVVVVNANGTS---TWTTLVDPQQP--IPPFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTFADIA +F+ L G+++ HN FD +R F G
Sbjct: 68 ITDAMVRGAPTFADIAGALFERLDGKLFVAHNA-SFDRGFLRAEFERAG 115
>gi|206577790|ref|YP_002240302.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae 342]
gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
Length = 243
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + F ++ R + +
Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYIRGAELVIHNA-SFDIGFMDYEFGKLNRGIGKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM
43160]
gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM
43160]
Length = 609
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 89/200 (44%), Gaps = 17/200 (8%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPA--DPELISSLSVRCNGITPDAVVSSPTFADIA 85
AI E GA+ V + E L + TLV P P IS L+ GIT V ++P +
Sbjct: 55 AITEIGAVKV--RGGEVLGEFQTLVDPGCEIPPYISVLT----GITSTMVAAAPRIGAVL 108
Query: 86 DTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR--AG 143
+ G + HN FD ++ A A G P P ++D+ A+L +R R
Sbjct: 109 PHFLEFARGAVLVAHNA-PFDLGFLKAACAANGIPWPA-TASVDT-AVLARRLLSRDEVP 165
Query: 144 DMKMASLATYFGLGQQ-THRSLDDVRMNLEVLKYCATVL--FLESSLPDIFTVNSWVSPN 200
+ K+A+LA YF + HR+L D R ++VL L +SL ++ + V P+
Sbjct: 166 NCKLATLAPYFRTSTEPCHRALADARATVDVLHGLFERLGPLGITSLEELTGLTRQVDPD 225
Query: 201 ATTRSRSNAKSSPEGTSQNL 220
R R A + P G L
Sbjct: 226 -RLRKRHLADAVPHGPGVYL 244
>gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
gi|365144799|ref|ZP_09348873.1| DNA polymerase III subunit epsilon [Klebsiella sp. 4_1_44FAA]
gi|424934955|ref|ZP_18353327.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425078253|ref|ZP_18481356.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425079989|ref|ZP_18483086.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425088886|ref|ZP_18491979.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090108|ref|ZP_18493193.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
gi|363647825|gb|EHL87029.1| DNA polymerase III subunit epsilon [Klebsiella sp. 4_1_44FAA]
gi|405591232|gb|EKB64745.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405601978|gb|EKB75131.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405606914|gb|EKB79884.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405613792|gb|EKB86513.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407809142|gb|EKF80393.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
Length = 246
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + F+++ R + +
Sbjct: 69 HGIADEFLLDKPTFADVADEFMDYIRGAELVIHNA-SFDIGFMDYEFSKLNRGIGKTETF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKITDSLALARKMFPGKR 145
>gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS]
gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
Length = 630
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 85/196 (43%), Gaps = 32/196 (16%)
Query: 14 DVETTVPTRPGQR-FAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCNGI 70
D+ETT G+R AI E GA+ V + E L +TLV P A P I SL+ GI
Sbjct: 34 DLETTGGRATGERPDAITEIGAVKV--RGGEVLGELATLVDPGRAIPPQIVSLT----GI 87
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V ++P + + G + HN FD +R A + G P P
Sbjct: 88 TTAMVCAAPRIESVLPAFLEFARGSVLVAHNA-GFDIGFLRAAAEQCGLTWPRPP----- 141
Query: 131 LALLTQRFGRR------AGDMKMASLATYF-GLGQQTHRSLDDVRMNLEVL--------- 174
L T + RR A +++++LA F THR+LDD R ++VL
Sbjct: 142 -VLCTVKLARRVLTRDEAPSVRLSALAQLFRAKTTPTHRALDDARATVDVLHGLIERIGN 200
Query: 175 KYCATVLFLESSLPDI 190
+ T L + LPD+
Sbjct: 201 QGVHTYTDLRAYLPDV 216
>gi|419693867|ref|ZP_14221847.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9872]
gi|380671945|gb|EIB87136.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9872]
Length = 253
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ A + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|387890429|ref|YP_006320727.1| DNA polymerase III [Escherichia blattae DSM 4481]
gi|414595503|ref|ZP_11445123.1| DNA polymerase III subunit epsilon [Escherichia blattae NBRC
105725]
gi|386925262|gb|AFJ48216.1| DNA polymerase III [Escherichia blattae DSM 4481]
gi|403193587|dbj|GAB82775.1| DNA polymerase III subunit epsilon [Escherichia blattae NBRC
105725]
Length = 243
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLVRP---ADPELISSLSVR 66
D ETT + G + I+E GA+ V ++L +NY ++P DPE +
Sbjct: 11 LDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTG-NNYHVYLKPDRLVDPE-----AFN 64
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK- 125
+GI + ++ P FA +AD D + G HN FD + F+++GR P+
Sbjct: 65 VHGIADEFLLDKPDFAAVADGFIDYIRGAELVIHNA-SFDIGFMDYEFSKLGRNLPKTDT 123
Query: 126 --GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 124 FCKITDSLALARRMFPGKR 142
>gi|397166896|ref|ZP_10490339.1| DNA polymerase III, epsilon subunit [Enterobacter radicincitans DSM
16656]
gi|396091042|gb|EJI88609.1| DNA polymerase III, epsilon subunit [Enterobacter radicincitans DSM
16656]
Length = 226
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRP---ADPELISSLSVRCNGITPDAVVSSPTFADIA 85
I+E GA+ V ++L +NY ++P DPE +GI + ++ PTFADIA
Sbjct: 13 IIEIGAVEVVNRRLTG-NNYHIYLKPDRLVDPEAFG-----VHGIADEFLLDKPTFADIA 66
Query: 86 DTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK---GTIDSLALLTQRF-GRR 141
D D + G HN FD + F ++ R P+ DSLAL + F G+R
Sbjct: 67 DEFIDYIRGAELVIHNA-SFDIGFMDYEFGKLNRGIPKTDTFCKVTDSLALARKMFPGKR 125
>gi|423518237|ref|ZP_17494718.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-4]
gi|401161598|gb|EJQ68962.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-4]
Length = 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH ++ HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTKVIVAHN-ASFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA V
Sbjct: 168 CAAV 171
>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
Hakam]
gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
NVH0597-99]
gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB108]
gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB102]
gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
gi|376267505|ref|YP_005120217.1| DNA polymerase III subunit alpha [Bacillus cereus F837/76]
gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
Hakam]
gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB108]
gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
NVH0597-99]
gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB102]
gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
gi|364513305|gb|AEW56704.1| DNA polymerase III alpha subunit [Bacillus cereus F837/76]
Length = 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G P P+ K ID++ LL +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLGLPEPQNK-VIDTV-LLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|423558865|ref|ZP_17535167.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MC67]
gi|401190634|gb|EJQ97675.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MC67]
Length = 318
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 58 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNM 112
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +R+ + A + K+ +L G+ +H + DD V +
Sbjct: 113 LG--LPEPKNKVIDTVFLAKRYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQR 170
Query: 177 CATV 180
CA++
Sbjct: 171 CASI 174
>gi|410625132|ref|ZP_11335920.1| DNA polymerase III subunit epsilon [Glaciecola mesophila KMM 241]
gi|410155263|dbj|GAC22689.1| DNA polymerase III subunit epsilon [Glaciecola mesophila KMM 241]
Length = 763
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
DVETT +PG R I E GA+ V ++ + ++S+L+ P P I+ L+ GI+
Sbjct: 602 DVETTGGCKPGHR--ITEIGAVKVINGRV--VDSWSSLINPERRVPHFITRLT----GIS 653
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
D V +P F ++ D + + I+ HN+ FD + + + R PK
Sbjct: 654 NDMVEDAPLFCEVIDDLEAFMQDCIFVAHNV-NFDYGFFKLEYGRLERAFSMPK------ 706
Query: 132 ALLTQRFGRR----AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
L T R R+ + + L +GL HR+L D + E+L
Sbjct: 707 -LCTVREMRKYYPGSKSYSLGKLTKEYGLSLDNHHRALCDAQAAAELL 753
>gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum Spyr1]
gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum Spyr1]
Length = 333
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 11/172 (6%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
+D + A DVET+ RPGQ I+ A+ + E YS L DP
Sbjct: 15 EDGAGWAVVDVETS-GFRPGQA-RIVSVAALALSDDGNVEKSLYSLLDPGVDPG-----P 67
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
+G+T + + PTF D+ + ++L GR HN+ FD + + +G A P
Sbjct: 68 THVHGLTAEMLEGQPTFGDVVGDLCEVLRGRTLVAHNV-GFDYSFLSAEAELVG--AELP 124
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
T+ L +R ++++ +LA ++G+ Q + H +LDD + ++LK
Sbjct: 125 IDTVMCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILK 176
>gi|416918043|ref|ZP_11932398.1| DNA polymerase III subunit epsilon, partial [Burkholderia sp.
TJI49]
gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49]
Length = 243
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNPRTGDR--LIEIGCVELLNRRLTGNNLHIYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++ D + D + G HN FD + FA +G P G
Sbjct: 58 GLTTEFLSDKPKFAEVVDQIRDFVKGAELIIHNA-PFDLGFLDAEFARLGLPPFTEHCGG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|154174963|ref|YP_001408508.1| DNA polymerase III subunit epsilon [Campylobacter curvus 525.92]
gi|112803051|gb|EAU00395.1| nickel transport permease component NikD [Campylobacter curvus
525.92]
Length = 273
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 28/217 (12%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLV-RPADPELISSLSV 65
+ E D+ET+ GQ I+E GA+ + K E+ + + V P PE I+ L+
Sbjct: 73 QQEFCIVDIETSGGITSGQ---IIEIGALKI--KNGVEIGRFESFVDAPFVPENITQLT- 126
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
GI+ + +P+ + + L ++ HN+ FD I ++ + IG
Sbjct: 127 ---GISQSDLTGAPSLKSVLERFKIFLGTSVFVAHNV-NFDYGFISQSLSNIGL------ 176
Query: 126 GTIDSLALLTQRFGRR---AGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLF 182
G + + L T RR + + SL G+ HR+L+D E+LK C
Sbjct: 177 GMLLNRKLCTIDLSRRTIASQKYGLGSLKELLGINNTHHRALNDAIAATEILKICI---- 232
Query: 183 LESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQN 219
S LP F++ S +++ + K PE + QN
Sbjct: 233 --SRLP--FSIQSVEDLINFSKTAPSMKLKPEPSLQN 265
>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens CPE str. F4969]
gi|24418366|sp|Q8XJR3.1|DPO3_CLOPE RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens CPE str. F4969]
Length = 1449
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E FD+ETT + + I+E GA+ + K E + ++ST V P P I+ L+
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKL--KDGEIVDSFSTFVDPKVNIPYKITELT-- 487
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
IT + V PT ++ + + + HN FD I++ ++G+ P
Sbjct: 488 --SITQNMVNGQPTIDEVLPKFMEFVGNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP-- 542
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLES 185
+D++ L + +K+ +A + G+ + HR++DD + E+LK+ + E
Sbjct: 543 VMDTVPLARYLYPDLK-KVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEM 601
Query: 186 SLPDIFTVN 194
+ D+ T+N
Sbjct: 602 DIHDVKTLN 610
>gi|339322030|ref|YP_004680924.1| excinuclease Cho [Cupriavidus necator N-1]
gi|338168638|gb|AEI79692.1| excinuclease Cho [Cupriavidus necator N-1]
Length = 531
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 86/200 (43%), Gaps = 40/200 (20%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCN 68
I F D+ETT QR I E G + V P + E + TL+ DP + I R
Sbjct: 33 IVFVDLETTGAD--AQRDRITEIGVVEVGPDGIIE---WDTLL---DPGMSIPPFIQRMT 84
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT + V PTF +A+++ + L GR+ HN RFD ++ AF G T
Sbjct: 85 GITEEMVHGQPTFESLAESLAERLQGRLLVAHNA-RFDYGFLKNAFRRAGV-------TF 136
Query: 129 DSLALLTQRFGR-------RAGDMKMASLATYFGLG-QQTHRSLDDVRM----------- 169
+ L T R R R G + +L FGL + HR+L D +
Sbjct: 137 RADVLCTVRLSRSLFPSVERHG---LDALIARFGLTPKGRHRALADAELLWQFWQKIHAT 193
Query: 170 -NLEVLKYCATVLFLESSLP 188
++E+++ L +SLP
Sbjct: 194 YSVELVESAVRTLVRRASLP 213
>gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
Length = 447
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 21/130 (16%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
DVETT T +I +F K ++E +++LV P D P I++L+ GI
Sbjct: 7 DVETTGQTNKITEISIFKFDG----DKVVDE---FTSLVNPEDVIPYYITTLT----GID 55
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V ++PTFA+IA V DI I+ HN+ FD IR F + + K
Sbjct: 56 NAMVANAPTFAEIAQQVLDITEDTIFVAHNV-NFDYNVIRNEFKAVDKDFRRKK------ 108
Query: 132 ALLTQRFGRR 141
L T R R+
Sbjct: 109 -LCTVRLSRK 117
>gi|385208675|ref|ZP_10035543.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
gi|385181013|gb|EIF30289.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
Length = 244
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 26/191 (13%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ILE G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--ILELGCVELVNRRLTGNNLHFYINPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT- 127
G+T + + P F +IAD D + G HN FD + FA +G P P T
Sbjct: 58 GLTTEFLSDKPKFGEIADQFRDFIQGADLIIHNA-PFDIGFLDVEFALLGLP---PVSTY 113
Query: 128 ----IDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATV 180
ID+LA Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 114 CGEIIDTLARAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMT 169
Query: 181 LFLESSLPDIF 191
ES + D+
Sbjct: 170 RGQESLVIDML 180
>gi|443622030|ref|ZP_21106574.1| hypothetical protein STVIR_0479 [Streptomyces viridochromogenes
Tue57]
gi|443344485|gb|ELS58583.1| hypothetical protein STVIR_0479 [Streptomyces viridochromogenes
Tue57]
Length = 636
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 15/168 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVET+ +R +L I + P E+ +STL+ P DP V +G
Sbjct: 21 ALVDVETS--GLMARRDRVLSVAVITIGPDG-EQSGEFSTLLNPGCDPG-----PVEVHG 72
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNI-LRFDCARIREAFAEIGRPAPEPKGTI 128
+T + + +PTF +A + +L R+ HN +D A A + P + T+
Sbjct: 73 LTVERLQGAPTFDQVAGRIGAMLQDRVLVAHNAQFDYDFLAYEFARARMWLPVSQRMCTL 132
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
L ++ DMK+ +LA ++G+ QQ H +LDD R+ +L+
Sbjct: 133 ----ALNRQVDPPTDDMKLGTLAAHYGVPQQRAHDALDDTRVLAGILR 176
>gi|423628691|ref|ZP_17604440.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD154]
gi|401269216|gb|EJR75251.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD154]
Length = 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|419698217|ref|ZP_14225938.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23211]
gi|380675836|gb|EIB90727.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23211]
Length = 253
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ A + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22]
gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22]
Length = 246
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + F ++ R + +
Sbjct: 69 HGIADEFLLDKPTFADVADEFMDYIRGAELVIHNA-SFDIGFMDYEFGKLNRGIGKTETF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKITDSLALARKMFPGKR 145
>gi|418070705|ref|ZP_12707980.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus R0011]
gi|423077964|ref|ZP_17066651.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
rhamnosus ATCC 21052]
gi|357540125|gb|EHJ24142.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus R0011]
gi|357552594|gb|EHJ34364.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
rhamnosus ATCC 21052]
Length = 933
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 8 SEIAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLS 64
+ A D+ETT + G R +++FG LV K+ + S ++ P + P+ I
Sbjct: 5 TTFAVVDLETTGTSVKDGDR--MIQFGCALVRHGKI--IQTISQMINPDRSVPQTIQ--- 57
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R GI+P+ +V++P F ++A + +L ++ HN+ FD + F IG P +
Sbjct: 58 -RLTGISPERLVAAPYFDEVASALHQVLTKTVFVAHNV-NFDYPFLNAEFERIGLPKLQL 115
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGL 156
+ ID++ L Q G +++ L T+F +
Sbjct: 116 EA-IDTVE-LAQVLLPEIGSFRLSDLTTHFAI 145
>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens SM101]
Length = 1449
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E FD+ETT + + I+E GA+ + K E + ++ST V P P I+ L+
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKL--KDGEIVDSFSTFVDPKVNIPYKITELT-- 487
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
IT + V PT ++ + + + HN FD I++ ++G+ P
Sbjct: 488 --SITQNMVNGQPTIDEVLPKFMEFVGNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP-- 542
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLES 185
+D++ L + +K+ +A + G+ + HR++DD + E+LK+ + E
Sbjct: 543 VMDTVPLARYLYPDLK-KVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEM 601
Query: 186 SLPDIFTVN 194
+ D+ T+N
Sbjct: 602 DIHDVKTLN 610
>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
Length = 303
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHKNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 167 VYQKCASI 174
>gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400]
gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
Length = 244
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 26/191 (13%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ILE G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--ILELGCVELVNRRLTGNNLHFYINPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT- 127
G+T + + P F +IAD D + G HN FD + FA +G P P T
Sbjct: 58 GLTTEFLSDKPKFGEIADQFRDFIQGADLIIHNA-PFDIGFLDVEFALLGLP---PVSTY 113
Query: 128 ----IDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATV 180
ID+LA Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 114 CGEIIDTLARAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMT 169
Query: 181 LFLESSLPDIF 191
ES + D+
Sbjct: 170 RGQESLVIDML 180
>gi|402548230|ref|ZP_10845094.1| exonuclease [Campylobacter sp. FOBRC14]
gi|401015717|gb|EJP74495.1| exonuclease [Campylobacter sp. FOBRC14]
Length = 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 28/217 (12%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLV-RPADPELISSLSV 65
+ E D+ET+ GQ I+E GA+ + K E+ + + V P PE I+ L+
Sbjct: 73 QQEFCIVDIETSGGITSGQ---IIEIGALKI--KNGVEIGRFESFVDAPFVPENITQLT- 126
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
GI+ + +P+ + + L ++ HN+ FD I ++ + IG
Sbjct: 127 ---GISQSDLTGAPSLKSVLERFKIFLGTSVFVAHNV-NFDYGFISQSLSSIGL------ 176
Query: 126 GTIDSLALLTQRFGRR---AGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLF 182
G + + L T RR + + SL G+ HR+L+D E+LK C
Sbjct: 177 GMLLNRKLCTIDLSRRTIASQKYGLGSLKELLGINNTHHRALNDAIAATEILKICI---- 232
Query: 183 LESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQN 219
S LP F++ S +++ + K PE + QN
Sbjct: 233 --SRLP--FSIQSVEDLINFSKTAPSMKLKPEPSLQN 265
>gi|420264051|ref|ZP_14766686.1| DNA polymerase III epsilon subunit [Enterococcus sp. C1]
gi|394768950|gb|EJF48827.1| DNA polymerase III epsilon subunit [Enterococcus sp. C1]
Length = 918
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT R I++FG +LV K+ ++ ++ + P IS R I
Sbjct: 6 AVVDLETTGTDSTIDR--IIQFGCVLVQDGKI--INRFAADINP--DRRISKQIQRLTHI 59
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V +P F D+ADT++++L I+ HNI FD + F G P G ID+
Sbjct: 60 TNQQVSKAPYFEDVADTIYNLLSNTIFVAHNIY-FDYHFLSNEFVRCGLPPLSLPG-IDT 117
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCATVL 181
+ L Q F ++ LA G H++ D + + Y ++
Sbjct: 118 VE-LAQVFLPTESSFRLGDLADSIGFRHDNPHQADSDAEVTAALFLYIEAIM 168
>gi|392977714|ref|YP_006476302.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392323647|gb|AFM58600.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 243
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F ++ R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFLDYIKGAELIIHNA-SFDIGFMDYEFNKLQRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|419619383|ref|ZP_14152851.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 51494]
gi|419632770|ref|ZP_14165223.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23269]
gi|419646017|ref|ZP_14177495.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 53161]
gi|419671208|ref|ZP_14200881.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-14]
gi|419673238|ref|ZP_14202713.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 51037]
gi|419679424|ref|ZP_14208428.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 87459]
gi|419695170|ref|ZP_14223068.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23210]
gi|380602662|gb|EIB22913.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 51494]
gi|380613675|gb|EIB33145.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23269]
gi|380624426|gb|EIB43078.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 53161]
gi|380649722|gb|EIB66410.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-14]
gi|380654130|gb|EIB70506.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 51037]
gi|380657431|gb|EIB73503.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 87459]
gi|380679560|gb|EIB94402.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23210]
Length = 256
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+LKYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEILKYC 227
>gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sp. oral taxon 014 str. F0314]
gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sp. oral taxon 014 str. F0314]
Length = 463
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 74/182 (40%), Gaps = 32/182 (17%)
Query: 48 YSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDC 107
Y LV P P I GIT +AV +P F+DIA + +LHG + HN RFD
Sbjct: 54 YEWLVNPQQP--IPKFVADLTGITDEAVSGAPVFSDIAADLLPLLHGAVVVAHNS-RFDY 110
Query: 108 ARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDM----KMASLATYFGLGQQT-HR 162
+R F G P AL T + RR + S+ FG+ ++ HR
Sbjct: 111 TFLRHEFRRAGMDFAAP-------ALCTVQLSRRLYPQFYRHNLDSIIERFGIAVESRHR 163
Query: 163 SLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPNATTRSRSNAK----SSPEGTSQ 218
++ DV A FLE SL + W RS N K S PEG S+
Sbjct: 164 AMADV---------AALSDFLERSLVEK-GAEEW---ERHCRSLMNPKMLPASLPEGLSR 210
Query: 219 NL 220
L
Sbjct: 211 RL 212
>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|423574790|ref|ZP_17550909.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-D12]
gi|423604758|ref|ZP_17580651.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD102]
gi|401211060|gb|EJR17809.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-D12]
gi|401243906|gb|EJR50270.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD102]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
12755]
gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
12755]
Length = 918
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT R I++FG +LV K+ ++ ++ + P IS R I
Sbjct: 6 AVVDLETTGTDSTIDR--IIQFGCVLVQDGKI--INRFAADINP--DRRISKQIQRLTHI 59
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V +P F D+ADT++++L I+ HNI FD + F G P G ID+
Sbjct: 60 TNQQVSKAPYFEDVADTIYNLLSNTIFVAHNIY-FDYHFLSNEFVRCGLPPLSLPG-IDT 117
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCATVL 181
+ L Q F ++ LA G H++ D + + Y ++
Sbjct: 118 VE-LAQVFLPTESSFRLGDLADSIGFRHDNPHQADSDAEVTAALFLYIEAIM 168
>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
Length = 318
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--LPEPKNKVIDTVFLAKKYMKHATNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 167 VYQKCAAI 174
>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHATNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 318
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 167 VYQKCASI 174
>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
Length = 1433
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT P Q+ I E GA+ V ++ + +S V P I S V+ GIT
Sbjct: 425 FDIETT-GLNP-QQDRITEIGAVKVRNGQI--VDRFSAFVNPGVS--IPSFIVKLTGITN 478
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V +P + + + + G + HN FD I+ IG P +D+L
Sbjct: 479 DMVKDAPPIEQVLNEFMEFIQGSVLVAHN-ANFDVGFIKHNAKIIGEKVKNP--YLDTLE 535
Query: 133 LLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVL 181
L + F G K+ +A + + + HR++DD ++ +C L
Sbjct: 536 LCRKMFP-ELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFIHCLNEL 584
>gi|455649317|gb|EMF28134.1| DNA polymerase III subunit epsilon [Streptomyces gancidicus BKS
13-15]
Length = 327
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVETT R + I+ + + E H Y+ + DP V +G+
Sbjct: 24 AVVDVETTGLARDDR---IISAAVYRLDARGEVEDHWYTVVNPERDPG-----PVWIHGL 75
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T + + +P FADIA L GR+ HN + FD I +A AP + + +
Sbjct: 76 TSEMLEGAPLFADIAAEFAARLEGRVLVAHNAV-FDWQMIAREYARARGEAPV-RQRLCT 133
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
+A L++ G + K+ SLA +FG+ Q + H +LDD R+ E +
Sbjct: 134 IA-LSKELGLPLPNHKLESLAAHFGVVQRRAHHALDDARVLAEAFR 178
>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
25259]
gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
ATCC 25259]
Length = 470
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRC 67
+AF D+ETT G A I V + + +STLV P A P+ I L+
Sbjct: 10 LAFVDLETT-----GANAARDRVTEIGVVVVDGDRVETWSTLVNPERAIPQFIQQLT--- 61
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GI+ + V +PTFA +AD + + L GR++ HN RFD ++ + +GR +
Sbjct: 62 -GISNEMVADAPTFARVADELAERLDGRLFIAHNA-RFDYGFLKHEYQRLGR---RFRAD 116
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQ--THRSLDD 166
+ L++R + SL GL + HR+L D
Sbjct: 117 VLCTVRLSRRLFPEHYRHNLDSLIARHGLATEGDRHRALAD 157
>gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|453365745|dbj|GAC78665.1| DNA polymerase III epsilon subunit [Gordonia malaquae NBRC 108250]
Length = 604
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 24/157 (15%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPAD---PELISSLSVRCNGITPDAVVSSPTFADI 84
AI E GA+ + + E L ++TLV P P++++ GIT +P ++
Sbjct: 49 AITEIGAVKI--RGGEVLGEFATLVDPGREIPPQIVA-----LTGITTAMTYDAPPIEEV 101
Query: 85 ADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR--- 141
+ G I HN RFD A +R+A A + P P + +L T RR
Sbjct: 102 LPAFAEFARGSILVAHNA-RFDTAFLRKAAARMNLPWPF------TTSLCTVAMARRILT 154
Query: 142 ---AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
A +K+++LA F + + THR+LDD R ++V
Sbjct: 155 RDEAPSVKLSALADLFNVSVRPTHRALDDARATVDVF 191
>gi|408677192|ref|YP_006877019.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
10712]
gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
10712]
Length = 330
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 97/223 (43%), Gaps = 20/223 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + I+ + + E H Y TLV P DP V +G
Sbjct: 22 AVVDVETTGLARDDR---IVSAAVYRLDAQGNVEDHWY-TLVNPERDPG-----PVWIHG 72
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T D + +P F +IA L GR+ HN + FD I +A AP + +
Sbjct: 73 LTTDVLAGAPLFPEIAAEFAARLDGRVLVAHNAM-FDWQMIAREYARAESAAPV-RQRLC 130
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK---YCATVLFLES 185
++A L + + K+ SLA +FG+ QQ H +LDD R+ E + + A +
Sbjct: 131 TIA-LAKELSLPLPNHKLESLAAHFGVVQQRAHNALDDARVLAEAFRPSLHAAAERNVRL 189
Query: 186 SLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLST--PSSK 226
L + + W S + R A SSP G+S + PS K
Sbjct: 190 PLLECRPLTEWASSSERPRIGQQA-SSPYGSSYRAGSWRPSRK 231
>gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M]
gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 674
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 20/155 (12%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + L ++TLV DP+ I VR GIT + +PT +
Sbjct: 79 AITEIGAVKVRGGVI--LGEFATLV---DPQRSIPPQIVRLTGITTAMLCDAPTIDSVLP 133
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR----- 141
F+ + + HN FD +R A P K L T R RR
Sbjct: 134 MFFEFVGNSVLVAHNA-GFDIGFLRAAAGRCDIAWPGSK------VLCTVRLARRVLSRE 186
Query: 142 -AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + Q THR+LDD R +EVL
Sbjct: 187 EAPSVRLAALARLFSVATQPTHRALDDARATVEVL 221
>gi|418046412|ref|ZP_12684500.1| DNA polymerase III, epsilon subunit [Mycobacterium rhodesiae JS60]
gi|353192082|gb|EHB57586.1| DNA polymerase III, epsilon subunit [Mycobacterium rhodesiae JS60]
Length = 329
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 11/162 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
DVET+ RPG I+ A+ + P+ E H+ +L+ P + +G+T +
Sbjct: 20 DVETS-GFRPGH-ARIISLAALALDPQGRVE-HSVVSLLNPG----VDPGPTHIHGLTAE 72
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
+ PTFADIA V D+LHGR HN+ FD + + + AE+ A P T+
Sbjct: 73 MLEDQPTFADIAPDVIDLLHGRTLVAHNVA-FDYSFL-ASEAELAGTA-LPVDTVMCTVE 129
Query: 134 LTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
L +R ++++ +LA ++ + Q + H + DD + VL
Sbjct: 130 LARRLELGLENLRLETLARHWAVPQTRAHDAFDDALVLSRVL 171
>gi|388256939|ref|ZP_10134119.1| DNA polymerase III, epsilon subunit [Cellvibrio sp. BR]
gi|387939143|gb|EIK45694.1| DNA polymerase III, epsilon subunit [Cellvibrio sp. BR]
Length = 471
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCN 68
A D+ETT R I+E G + V + + ++STL+ P PE I L+
Sbjct: 10 AIVDIETTGGNVTYDR--IIEIGIVEVTEQGVT---HWSTLINPRTTIPEGIQRLT---- 60
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + ++P F +A + L G+++ HN+ RFD IR FA + P
Sbjct: 61 GITNEMAAAAPYFEQVAKEIILRLQGKLFVAHNV-RFDYGFIRNEFARLAYP 111
>gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
acidilactici DSM 20284]
gi|418069118|ref|ZP_12706398.1| Rad3-related DNA helicase [Pediococcus acidilactici MA18/5M]
gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
acidilactici DSM 20284]
gi|357537851|gb|EHJ21874.1| Rad3-related DNA helicase [Pediococcus acidilactici MA18/5M]
Length = 927
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLS 64
++ A D+ETT T + I++ G + ++ E Y T + P P+ IS
Sbjct: 3 KTRYAVVDLETT-GTGSVEESRIIQIGCAFIEGDQITE--TYQTKINPQMTIPKRIS--- 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R GIT V +P FAD+AD ++ L G ++ HN+ FD + G P +
Sbjct: 57 -RLTGITDQQVRQAPKFADVADKIYQKLAGTVFVAHNV-NFDFPFLNRELVRSGYPELDL 114
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGL 156
K ID++ L F R G ++ L Y +
Sbjct: 115 KA-IDTVTLSQVLFSRTRG-YRLRDLTNYLHI 144
>gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205]
gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205]
Length = 585
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT G I E GA+ V + E+L +TLV P P + GIT
Sbjct: 36 DLETTGGAPDGG--GITEIGAVKV--RGGEQLGVLATLVNPGVP--VPPFVTVLTGITQA 89
Query: 74 AVVSSPTFADIADTVFDILHG-RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
++ +P+ A + + + L + HN +D ++ A A G P P+ +D+ A
Sbjct: 90 MLLPAPSIAQVLPSFLEFLSADAVLVAHNA-PYDVGFLKAACAAHGHRWPNPR-ILDTAA 147
Query: 133 LLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L + R + ++ +LA YF Q THR+LDD + ++VL
Sbjct: 148 LARRVLSRDEVPNRRLGTLAAYFRTSTQPTHRALDDAKATVDVL 191
>gi|86153724|ref|ZP_01071927.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|121612917|ref|YP_001000159.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167005117|ref|ZP_02270875.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 81-176]
gi|419617643|ref|ZP_14151214.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 129-258]
gi|419669142|ref|ZP_14198937.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-11]
gi|85842685|gb|EAQ59897.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87250067|gb|EAQ73025.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 81-176]
gi|380596950|gb|EIB17623.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 129-258]
gi|380647936|gb|EIB64821.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-11]
Length = 253
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIARFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ A + L I+ HN+ RFD + I A E G
Sbjct: 120 ELT----GITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISRALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|427439084|ref|ZP_18923826.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus lolii
NGRI 0510Q]
gi|425788462|dbj|GAC44614.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus lolii
NGRI 0510Q]
Length = 927
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLS 64
++ A D+ETT T + I++ G + ++ E Y T + P P+ IS
Sbjct: 3 KTRYAVVDLETT-GTGSVEESRIIQIGCAFIEGDQITE--TYQTKINPQMTIPKRIS--- 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R GIT V +P FAD+AD ++ L G ++ HN+ FD + G P +
Sbjct: 57 -RLTGITDQQVRQAPKFADVADKIYQKLAGTVFVAHNV-NFDFPFLNRELVRSGYPELDL 114
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGL 156
K ID++ L F R G ++ L Y +
Sbjct: 115 KA-IDTVTLSQVLFSRTRG-YRLRDLTNYLHI 144
>gi|423385126|ref|ZP_17362382.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-2]
gi|423528518|ref|ZP_17504963.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB1-1]
gi|401638222|gb|EJS55973.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-2]
gi|402450857|gb|EJV82683.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB1-1]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLVKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|381209154|ref|ZP_09916225.1| hypothetical protein LGrbi_04393 [Lentibacillus sp. Grbi]
Length = 225
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 43 EELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNI 102
E + Y +L+ P SS + R +GIT V +PTFA++ T+ L + HN
Sbjct: 51 EIVEEYYSLINPLTH--FSSFNTRIHGITAGDVADAPTFAELWPTLNSYLSNHLVVAHNA 108
Query: 103 LRFDCARIREAFAEIGRPAPEPKGTIDSL--ALLTQRFGRRAGDMKMASLATYFGLGQQT 160
FD + IR + PE +D L A +++R + K+ ++A+ G+ +
Sbjct: 109 -SFDMSVIRHTLDQFNLTYPE----MDYLCTANISRRVWPELTNHKLNTVASRHGIQFEH 163
Query: 161 HRSLDDVRMNLEVL 174
H +L+D R+ ++L
Sbjct: 164 HHALEDARVAAKIL 177
>gi|386586510|ref|YP_006082912.1| putative ATP-dependent DNA helicase [Streptococcus suis D12]
gi|353738656|gb|AER19664.1| putative ATP-dependent DNA helicase [Streptococcus suis D12]
Length = 822
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M T+ + A D+E T G I++ G +LV + E + +Y+T + P EL+
Sbjct: 4 MKDTRTSNRYAVVDLEAT---GTGTDAKIIQIGIVLV--ENGEIIDSYATDINPY--ELL 56
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + +P F +A T++D++ I+ HN+ +FD + EA G
Sbjct: 57 DDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYE 115
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
P+ +D++ L+Q F + +LA + LG Q H ++ D
Sbjct: 116 LLTPR--VDTVE-LSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISD 159
>gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
acidilactici 7_4]
gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
acidilactici 7_4]
Length = 927
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLS 64
++ A D+ETT T + I++ G + ++ E Y T + P P+ IS
Sbjct: 3 KTRYAVVDLETT-GTGSVEESRIIQIGCAFIEGDQITE--TYQTKINPQMTIPKRIS--- 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R GIT V +P FAD+AD ++ L G ++ HN+ FD + G P +
Sbjct: 57 -RLTGITDQQVRQAPKFADVADKIYQKLAGTVFVAHNV-NFDFPFLNRELVRSGYPELDL 114
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGL 156
K ID++ L F R G ++ L Y +
Sbjct: 115 KA-IDTVTLSQVLFSRTRG-YRLRDLTNYLHI 144
>gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 641
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVET+ +R +L I + P E+ +STL+ P DP V +G
Sbjct: 21 ALVDVETSGLV--ARRDRVLSVAVITIGPDG-EQTGEFSTLLDPGCDPG-----PVEVHG 72
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +PTF +A + +L R+ HN +FD + FA P + +
Sbjct: 73 LTAERLRGAPTFDQVAGRIGAMLQDRVLVAHNA-QFDYDFLAHEFARARMWLPVSQ-RLC 130
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
+LA L ++ DMK+ +LAT++ + QQ H +LDD R+ +L+
Sbjct: 131 TLA-LNRQVDPPTDDMKLGTLATHYDVPQQRAHDALDDTRVLAGILR 176
>gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
Length = 247
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPG----QRFAILEFGAILVCPKKL--EELHNYSTLVRP 54
M + DR I D ETT R G + I+E GA+ + +KL H Y R
Sbjct: 1 MKASYDR--IIVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYIKPDRE 58
Query: 55 ADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAF 114
DPE IS +GIT + + P++ADI + + G HN FD + F
Sbjct: 59 IDPEAIS-----VHGITDEFLRDKPSYADIHAEFLEFIKGAELVAHN-APFDTGFMDHEF 112
Query: 115 A----EIGRPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRM 169
IG+ K T D+LA+ + F G+R + L +G+ +HR+L +
Sbjct: 113 QMLDPSIGKTGDFCKVT-DTLAMAKKIFPGKRN---NLDVLCERYGI-DNSHRTLHGALL 167
Query: 170 NLEVL 174
+ E+L
Sbjct: 168 DAEIL 172
>gi|404215637|ref|YP_006669832.1| Nuclease subunit of the excinuclease complex [Gordonia sp. KTR9]
gi|403646436|gb|AFR49676.1| Nuclease subunit of the excinuclease complex [Gordonia sp. KTR9]
Length = 600
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 87/197 (44%), Gaps = 29/197 (14%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+ + D+ETT + P R I E GA+ + + E + ++TLV P P I V
Sbjct: 42 TTLVVVDLETT-GSDPA-RDRITEIGAVKI--RGGEIIGEFATLVDPGRP--IPPQIVTL 95
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT + +P + + F+ G I HN RFD +R+ + P
Sbjct: 96 TGITTAMLTDAPRIESVLPSFFEFARGSILVAHNA-RFDMGFLRQNAIRLQLP------W 148
Query: 128 IDSLALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL------ 174
SL+L T RR A +K+++LA F + + THR+LDD R +EV
Sbjct: 149 TFSLSLCTVTMARRILTRDEAPTVKLSALADLFDVSVRPTHRALDDARATVEVFHRLLER 208
Query: 175 ---KYCATVLFLESSLP 188
+ ATV L S LP
Sbjct: 209 VGNQGIATVGDLTSYLP 225
>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens B str. ATCC 3626]
gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens ATCC 13124]
gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens B str. ATCC 3626]
Length = 1449
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E FD+ETT + + I+E GA+ + K E + ++ST V P P I+ L+
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKL--KDGEIVDSFSTFVDPKVNIPYKITELT-- 487
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
IT + V PT ++ + + + HN FD I++ ++G+ P
Sbjct: 488 --SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP-- 542
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLES 185
+D++ L + +K+ +A + G+ + HR++DD + E+LK+ + E
Sbjct: 543 VMDTVPLARYLYPDLK-KVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEM 601
Query: 186 SLPDIFTVN 194
+ D+ T+N
Sbjct: 602 DIHDVKTLN 610
>gi|434376667|ref|YP_006611311.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-789]
gi|401875224|gb|AFQ27391.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-789]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH1134]
gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
gi|423437070|ref|ZP_17414051.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X12-1]
gi|423581813|ref|ZP_17557924.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD014]
gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH1134]
gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
gi|401121401|gb|EJQ29192.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X12-1]
gi|401214155|gb|EJR20886.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD014]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|170768002|ref|ZP_02902455.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
gi|170123490|gb|EDS92421.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
Length = 243
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|422346361|ref|ZP_16427275.1| DNA polymerase III polC-type [Clostridium perfringens WAL-14572]
gi|373225906|gb|EHP48233.1| DNA polymerase III polC-type [Clostridium perfringens WAL-14572]
Length = 1449
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E FD+ETT + + I+E GA+ + K E + ++ST V P P I+ L+
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKL--KDGEIVDSFSTFVDPKVNIPYKITELT-- 487
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
IT + V PT ++ + + + HN FD I++ ++G+ P
Sbjct: 488 --SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP-- 542
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLES 185
+D++ L + +K+ +A + G+ + HR++DD + E+LK+ + E
Sbjct: 543 VMDTVPLARYLYPDLK-KVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEM 601
Query: 186 SLPDIFTVN 194
+ D+ T+N
Sbjct: 602 DIHDVKTLN 610
>gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA++
Sbjct: 168 CASI 171
>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens NCTC 8239]
gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens NCTC 8239]
Length = 1449
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E FD+ETT + + I+E GA+ + K E + ++ST V P P I+ L+
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKL--KDGEIVDSFSTFVDPKVNIPYKITELT-- 487
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
IT + V PT ++ + + + HN FD I++ ++G+ P
Sbjct: 488 --SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP-- 542
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLES 185
+D++ L + +K+ +A + G+ + HR++DD + E+LK+ + E
Sbjct: 543 VMDTVPLARYLYPDLK-KVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEM 601
Query: 186 SLPDIFTVN 194
+ D+ T+N
Sbjct: 602 DIHDVKTLN 610
>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens E str. JGS1987]
gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens E str. JGS1987]
Length = 1449
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E FD+ETT + + I+E GA+ + K E + ++ST V P P I+ L+
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKL--KDGEIVDSFSTFVDPKVNIPYKITELT-- 487
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
IT + V PT ++ + + + HN FD I++ ++G+ P
Sbjct: 488 --SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP-- 542
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLES 185
+D++ L + +K+ +A + G+ + HR++DD + E+LK+ + E
Sbjct: 543 VMDTVPLARYLYPDLK-KVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEM 601
Query: 186 SLPDIFTVN 194
+ D+ T+N
Sbjct: 602 DIHDVKTLN 610
>gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987]
gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC
10987]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA++
Sbjct: 168 CASI 171
>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423425678|ref|ZP_17402709.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-2]
gi|423503715|ref|ZP_17480307.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HD73]
gi|449090544|ref|YP_007422985.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401112169|gb|EJQ20050.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-2]
gi|402458534|gb|EJV90280.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HD73]
gi|449024301|gb|AGE79464.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559080|ref|YP_006601804.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-771]
gi|423359409|ref|ZP_17336912.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD022]
gi|423561995|ref|ZP_17538271.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A1]
gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083520|gb|EJP91777.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD022]
gi|401200882|gb|EJR07760.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A1]
gi|401787732|gb|AFQ13771.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-771]
Length = 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|399058798|ref|ZP_10744772.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Novosphingobium sp. AP12]
gi|398040403|gb|EJL33511.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Novosphingobium sp. AP12]
Length = 294
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 43 EELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNI 102
+E+ Y TLV P D SS ++ +GIT PTFADI TV L GRI H+
Sbjct: 50 QEVFAYETLVDPCDE--FSSFNIGIHGITARHCAGQPTFADIHATVDSHLSGRITVAHSW 107
Query: 103 LRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHR 162
FD + A RPA E + +DS+ + +R + ++ L+ + G+ + H
Sbjct: 108 --FDKGALAAACRIGERPAIETR-WLDSVG-VAKRAWPQLSSHRLNVLSRFLGIEHRHHD 163
Query: 163 SLDDVR 168
+L D R
Sbjct: 164 ALSDAR 169
>gi|218898703|ref|YP_002447114.1| DNA polymerase III subunit epsilon [Bacillus cereus G9842]
gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
G9842]
Length = 315
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK]
gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
Length = 345
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 11/172 (6%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
+D + A DVET+ RPGQ I+ A+ + E YS L DP
Sbjct: 27 EDGAGWAVVDVETS-GFRPGQA-RIVSVAALALSDDGNVEKSLYSLLDPGVDPG-----P 79
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
+G+T + + PTF D+ + ++L GR HN+ FD + + +G A P
Sbjct: 80 THVHGLTAEMLEGQPTFGDVVGDLCEVLRGRTLVAHNV-GFDYSFLSAEAELVG--AELP 136
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
T+ L +R ++++ +LA ++G+ Q + H +LDD + ++LK
Sbjct: 137 IDTVMCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILK 188
>gi|365904084|ref|ZP_09441843.1| ATP-dependent helicase DinG [Lactobacillus versmoldensis KCTC 3814]
Length = 934
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 13/184 (7%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
+ A D+ETT I++FG +L+ ++ ++ N + P I++L+
Sbjct: 2 KKSYAVVDLETTNANWHDNG-RIIQFGCVLIEDGEITKIFNQKINPKVPIPSRITALT-- 58
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
G+T D V SPTF ++A +F +L +I+ HN+ FD + F IG K
Sbjct: 59 --GLTNDDVKDSPTFEELAPGIFKLLKDKIFIAHNV-NFDLPFLNREFNRIGMNELNIKA 115
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESS 186
ID++ L+Q K+ L +Y + S D + L L +ES
Sbjct: 116 -IDTVE-LSQIMFPTVSSYKLQDLTSYLSIEHDNPHSADS-----DALVTAKLFLVIESQ 168
Query: 187 LPDI 190
+ D+
Sbjct: 169 IRDL 172
>gi|372486800|ref|YP_005026365.1| exonuclease, DNA polymerase III, epsilon subunit family
[Dechlorosoma suillum PS]
gi|359353353|gb|AEV24524.1| exonuclease, DNA polymerase III, epsilon subunit family
[Dechlorosoma suillum PS]
Length = 488
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
R + F D+ETT R I E G + V + + +S+LV P P I
Sbjct: 16 REPLVFVDLETTGANPVRDR--ITEIGIVEVSAAGVTQ---WSSLVNPGIP--IPPFIQG 68
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
I+ + V +P FAD+A+ V L GR++ HN RFD ++ F +G +
Sbjct: 69 LTNISDEMVADAPPFADLAEEVLGRLKGRLFVAHNA-RFDYGFLKNEFRRLGL---KFHA 124
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGL-GQQTHRSLDDVRM 169
T+ L+++ + + +L GL + HR+L D R+
Sbjct: 125 TVLCTVKLSRKLEPQHHRHSLDALVERHGLYDEHRHRALSDARL 168
>gi|29374711|ref|NP_813863.1| DNA polymerase III subunit epsilon [Enterococcus faecalis V583]
gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|422713135|ref|ZP_16769891.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309A]
gi|422717758|ref|ZP_16774432.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309B]
gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309B]
gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309A]
Length = 289
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 9 EIAFFDVETTVPTRPGQRF---AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
E FD+ETT G F A+++ A E+ + TLV + + I
Sbjct: 7 EFIAFDIETT-----GLDFHQDAVIQISAARYVDGI--EVDYFDTLV---NSDYIPDEIT 56
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+ GIT D V+++PT ++ +FD L I GHNI FD ++ G E
Sbjct: 57 KLTGITNDQVLNAPTLDEVMPYLFDYLGDTILVGHNIKSFDFPFLKAK----GYNIAEGH 112
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMN----LEVLK 175
D+ R A + ++ +L FG+ +H +L+DVR++ +E+LK
Sbjct: 113 EIYDTRYFAATR-KHGAVNNQLTTLKLLFGIDAISHNALNDVRISAIVFMELLK 165
>gi|423585980|ref|ZP_17562067.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD045]
gi|423649484|ref|ZP_17625054.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD169]
gi|401232393|gb|EJR38894.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD045]
gi|401283513|gb|EJR89401.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD169]
Length = 315
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|419667644|ref|ZP_14197606.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-10]
gi|380645599|gb|EIB62627.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-10]
Length = 256
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYGFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+LKYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEILKYC 227
>gi|432370984|ref|ZP_19614051.1| DNA polymerase III subunit epsilon [Escherichia coli KTE11]
gi|430901001|gb|ELC22989.1| DNA polymerase III subunit epsilon [Escherichia coli KTE11]
Length = 246
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFADVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|423641294|ref|ZP_17616912.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD166]
gi|401278558|gb|EJR84489.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD166]
Length = 315
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|253751390|ref|YP_003024531.1| ATP-dependent DNA helicase [Streptococcus suis SC84]
gi|253753291|ref|YP_003026431.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
gi|253755878|ref|YP_003029018.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
gi|403061183|ref|YP_006649399.1| ATP-dependent DNA helicase [Streptococcus suis S735]
gi|251815679|emb|CAZ51270.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84]
gi|251818342|emb|CAZ56163.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407]
gi|251819536|emb|CAR45129.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7]
gi|402808509|gb|AFR00001.1| ATP-dependent DNA helicase [Streptococcus suis S735]
Length = 822
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M T+ + A D+E T G I++ G +LV + E + +Y+T + P EL+
Sbjct: 4 MKDTRTSNRYAVVDLEAT---GTGTDAKIIQIGIVLV--ENGEIIDSYATDINPY--ELL 56
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + +P F +A T++D++ I+ HN+ +FD + EA G
Sbjct: 57 DDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYE 115
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
P+ +D++ L+Q F + +LA + LG Q H ++ D
Sbjct: 116 LLTPR--VDTVE-LSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISD 159
>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
Length = 318
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 167 VYQKCAAI 174
>gi|423412576|ref|ZP_17389696.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3O-2]
gi|423431639|ref|ZP_17408643.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4O-1]
gi|401103404|gb|EJQ11386.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3O-2]
gi|401117708|gb|EJQ25544.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4O-1]
Length = 315
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens C str. JGS1495]
gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens C str. JGS1495]
Length = 1449
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E FD+ETT + + I+E GA+ + K E + ++ST V P P I+ L+
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKL--KDGEIVDSFSTFVDPKVNIPYKITELT-- 487
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
IT + V PT ++ + + + HN FD I++ ++G+ P
Sbjct: 488 --SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP-- 542
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLES 185
+D++ L + +K+ +A + G+ + HR++DD + E+LK+ + E
Sbjct: 543 VMDTVPLARYLYPDLK-KVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEM 601
Query: 186 SLPDIFTVN 194
+ D+ T+N
Sbjct: 602 DIHDVKTLN 610
>gi|421492483|ref|ZP_15939843.1| DNAQ [Morganella morganii subsp. morganii KT]
gi|400193090|gb|EJO26226.1| DNAQ [Morganella morganii subsp. morganii KT]
Length = 257
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLVRP---ADPELISSLSVR 66
D ETT + G + I+E GA+ V ++L N+ +RP DPE S
Sbjct: 24 LDTETTGMNKLGAHYEGHNIIEIGAVEVINRRLTG-RNFHLYIRPDRLVDPEAFS----- 77
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR---PAPE 123
+GI+ + ++ P FADIAD + + G HN FD + F ++ R P E
Sbjct: 78 VHGISDEFLMDKPVFADIADEFIEFIRGAELVIHNA-PFDIGFMDYEFRKLNRGIPPTAE 136
Query: 124 PKGTIDSLALLTQRF-GRR 141
DSL L Q F G+R
Sbjct: 137 FCTITDSLTLARQLFPGKR 155
>gi|389856889|ref|YP_006359132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
ST1]
gi|353740607|gb|AER21614.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
ST1]
Length = 822
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M T+ + A D+E T G I++ G +LV + E + +Y+T + P EL+
Sbjct: 4 MKDTRTSNRYAVVDLEAT---GTGTDAKIIQIGIVLV--ENGEIIDSYATDINPY--ELL 56
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + +P F +A T++D++ I+ HN+ +FD + EA G
Sbjct: 57 DDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYE 115
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
P+ +D++ L+Q F + +LA + LG Q H ++ D
Sbjct: 116 LLTPR--VDTVE-LSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISD 159
>gi|205355328|ref|ZP_03222099.1| exonuclease possibly DNA polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni CG8421]
gi|205346562|gb|EDZ33194.1| exonuclease possibly DNA polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni CG8421]
Length = 233
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 42 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 96
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 97 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 149
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+LKYC
Sbjct: 150 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEILKYC 204
>gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16]
gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16]
Length = 528
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 76/169 (44%), Gaps = 28/169 (16%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCN 68
I F D+ETT QR I E G + V P + E + TL+ DP + I R
Sbjct: 30 IVFVDLETTGAD--AQRDRITEIGVVEVGPDGIIE---WDTLL---DPGMSIPPFIQRMT 81
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT + V P+F +A+++ + L GR++ HN RFD ++ AF G T
Sbjct: 82 GITEEMVRGQPSFESLAESLAERLQGRLFVAHNA-RFDYGFLKNAFRRAGV-------TF 133
Query: 129 DSLALLTQRFGR-------RAGDMKMASLATYFGLG-QQTHRSLDDVRM 169
+ L T R R R G + +L FGL + HR+L D +
Sbjct: 134 RADVLCTVRLSRSLFPSVERHG---LDALIARFGLTPKGRHRALADAEL 179
>gi|366160508|ref|ZP_09460370.1| DNA polymerase III subunit epsilon [Escherichia sp. TW09308]
Length = 243
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFADVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis C]
gi|124602999|gb|EAY61274.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis C]
Length = 329
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNV-AFDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DDVR+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|15610847|ref|NP_218228.1| Probable DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium
tuberculosis H37Rv]
gi|148663576|ref|YP_001285099.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
H37Ra]
gi|167970866|ref|ZP_02553143.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
H37Ra]
gi|306778068|ref|ZP_07416405.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu001]
gi|306974185|ref|ZP_07486846.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu010]
gi|307081893|ref|ZP_07491063.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu011]
gi|307086506|ref|ZP_07495619.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu012]
gi|397675668|ref|YP_006517203.1| exonuclease, DNA polymerase III, epsilon subunit [Mycobacterium
tuberculosis H37Rv]
gi|148507728|gb|ABQ75537.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis
H37Ra]
gi|308213597|gb|EFO72996.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu001]
gi|308356458|gb|EFP45309.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu010]
gi|308360405|gb|EFP49256.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu011]
gi|308364101|gb|EFP52952.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu012]
gi|395140573|gb|AFN51732.1| exonuclease, DNA polymerase III, epsilon subunit [Mycobacterium
tuberculosis H37Rv]
gi|444897271|emb|CCP46537.1| Probable DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium
tuberculosis H37Rv]
Length = 329
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVA-FDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DDVR+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|302023531|ref|ZP_07248742.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68]
Length = 822
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M T+ + A D+E T G I++ G +LV + E + +Y+T + P EL+
Sbjct: 4 MKDTRTSNRYAVVDLEAT---GTGTDAKIIQIGIVLV--ENGEIIDSYATDINPY--ELL 56
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + +P F +A T++D++ I+ HN+ +FD + EA G
Sbjct: 57 DDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYE 115
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
P+ +D++ L+Q F + +LA + LG Q H ++ D
Sbjct: 116 LLTPR--VDTVE-LSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISD 159
>gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CDC1551]
gi|148824916|ref|YP_001289670.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis F11]
gi|254366256|ref|ZP_04982300.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis str. Haarlem]
gi|254552821|ref|ZP_05143268.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289763891|ref|ZP_06523269.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis GM 1503]
gi|306778600|ref|ZP_07416937.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu002]
gi|306786623|ref|ZP_07424945.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu003]
gi|306790989|ref|ZP_07429311.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu004]
gi|306791307|ref|ZP_07429609.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu005]
gi|306795373|ref|ZP_07433675.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu006]
gi|306801344|ref|ZP_07438012.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu008]
gi|306805555|ref|ZP_07442223.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu007]
gi|306969951|ref|ZP_07482612.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu009]
gi|392388303|ref|YP_005309932.1| dnaQ [Mycobacterium tuberculosis UT205]
gi|422814964|ref|ZP_16863182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
CDC1551A]
gi|13883693|gb|AAK48182.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
CDC1551]
gi|134151768|gb|EBA43813.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis str. Haarlem]
gi|148723443|gb|ABR08068.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
F11]
gi|289711397|gb|EFD75413.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis GM 1503]
gi|308328330|gb|EFP17181.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu002]
gi|308328734|gb|EFP17585.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu003]
gi|308332576|gb|EFP21427.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu004]
gi|308340068|gb|EFP28919.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu005]
gi|308344057|gb|EFP32908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu006]
gi|308347855|gb|EFP36706.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu007]
gi|308351843|gb|EFP40694.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu008]
gi|308352508|gb|EFP41359.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu009]
gi|323717575|gb|EGB26777.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
CDC1551A]
gi|378546854|emb|CCE39133.1| dnaQ [Mycobacterium tuberculosis UT205]
gi|379030101|dbj|BAL67834.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
gi|440583222|emb|CCG13625.1| putative DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
tuberculosis 7199-99]
Length = 329
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNV-AFDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DDVR+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|365159610|ref|ZP_09355788.1| exonuclease, DNA polymerase III, epsilon subunit, partial [Bacillus
sp. 7_6_55CFAA_CT2]
gi|363625073|gb|EHL76127.1| exonuclease, DNA polymerase III, epsilon subunit, partial [Bacillus
sp. 7_6_55CFAA_CT2]
Length = 317
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|223933999|ref|ZP_03625955.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
89/1591]
gi|223897336|gb|EEF63741.1| DnaQ family exonuclease/DinG family helicase [Streptococcus suis
89/1591]
Length = 822
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M T+ + A D+E T G I++ G +LV + E + +Y+T + P EL+
Sbjct: 4 MKDTRTSNRYAVVDLE---ATGTGTDAKIIQIGIVLV--ENGEIIDSYATDINPY--ELL 56
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + +P F +A T++D++ I+ HN+ +FD + EA G
Sbjct: 57 DDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYE 115
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
P+ +D++ L+Q F + +LA + LG Q H ++ D
Sbjct: 116 LLTPR--VDTVE-LSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISD 159
>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
Length = 318
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 167 VYQKCAAI 174
>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
Length = 318
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 167 VYQKCAAI 174
>gi|385331543|ref|YP_005885494.1| DNA polymerase III subunit epsilon [Marinobacter adhaerens HP15]
gi|311694693|gb|ADP97566.1| DNA polymerase 3, epsilon subunit [Marinobacter adhaerens HP15]
Length = 239
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 10/164 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D ETT P + I+E G + + ++L NY + P D E + + ++ +GIT
Sbjct: 9 LDTETT-GIDPAEGHRIIEIGCVELMERQLTG-RNYHVYINP-DRE-VEAEAITVHGITN 64
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG--RPAPEPKGTIDS 130
+ + P FA+IAD F+ + G HN FD + FA + R + G +DS
Sbjct: 65 EFLADKPRFAEIADEFFEFIKGAELVIHNAA-FDVGFMDSEFARLKPVRKTADHCGIVDS 123
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
LA+ R + ++ +L +G+ ++R L ++ E+L
Sbjct: 124 LAIARARHPGQKNNLD--ALCKRYGV-DNSNRDLHGALLDAEIL 164
>gi|392533913|ref|ZP_10281050.1| hypothetical protein ParcA3_07768 [Pseudoalteromonas arctica A
37-1-2]
Length = 732
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT + G R I E G + V K+ + +++LV P P I+SL+ GI+
Sbjct: 571 DIETTGGLKGGNR--ITEIGLVKVQHGKV--IDTWTSLVNPERHIPGFITSLT----GIS 622
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V ++P FA++ + D L G I+ HN+ FD I++ G PK
Sbjct: 623 DSMVYNAPVFAEVVKPLIDKLAGSIFVAHNV-NFDYGFIKKECEMAGHFFKMPKMCT--- 678
Query: 132 ALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
+ +++ + + +L+++F L + HR+L D E+L
Sbjct: 679 VVESRKAFKGLKSYSLGNLSSHFNLNLTSHHRALADATATAELL 722
>gi|402843894|ref|ZP_10892275.1| DNA polymerase III, epsilon subunit [Klebsiella sp. OBRC7]
gi|423101404|ref|ZP_17089106.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5242]
gi|376391192|gb|EHT03871.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5242]
gi|402275936|gb|EJU25069.1| DNA polymerase III, epsilon subunit [Klebsiella sp. OBRC7]
Length = 246
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P F D+ D D + G HN FD + FA++ R P+
Sbjct: 69 HGIADEFLMDKPAFGDVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFAKLNRGIPKTDTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|404423233|ref|ZP_11004889.1| hypothetical protein MFORT_22235 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403654631|gb|EJZ09536.1| hypothetical protein MFORT_22235 [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 626
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 81/198 (40%), Gaps = 32/198 (16%)
Query: 14 DVETT----VPTRPGQRF-AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
D+ETT PG + AI E GA+ + + E L +TLV P I V
Sbjct: 37 DLETTGGRATAKSPGDGYDAITEIGAVKI--RGGEVLGELATLVDPG--RSIPPQIVELT 92
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT V +P + + G + HN FD +R A G P P
Sbjct: 93 GITTAMVRDAPRIESVLPAFLEFCRGAVLVAHNA-GFDIGFLRAAAQRAGLGWPRPP--- 148
Query: 129 DSLALLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL------- 174
L T + RR A +K+++LA FG THR+LDD R ++VL
Sbjct: 149 ---VLCTVKLARRVLTRDEAPSVKLSALARLFGASTTPTHRALDDARATVDVLHGLIERV 205
Query: 175 --KYCATVLFLESSLPDI 190
+ T L++ LPD+
Sbjct: 206 GNQGIHTFADLKNYLPDV 223
>gi|357389587|ref|YP_004904426.1| putative exonuclease [Kitasatospora setae KM-6054]
gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
Length = 617
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVET+ +R +L + P + Y+TL+ P DP V +G
Sbjct: 20 ALVDVETSGLV--ARRDRVLSIAVLTFAPDGTQT-GEYTTLLDPGCDPG-----PVHVHG 71
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +P F +AD + +L GR+ HN +FD + FA P + +
Sbjct: 72 LTAERLRGAPAFEQVADRIGALLDGRVMVAHNA-QFDYDFLAHEFARARLHLPVAR-RLC 129
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
+LA L +R + +ASLA Y+G+ Q + H +LDD R+ + +
Sbjct: 130 TLA-LNRRVEPPVAGLSLASLAAYYGVPQTRAHDALDDTRVLAGIFR 175
>gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
Length = 286
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 38/215 (17%)
Query: 6 DRSEIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA---DPELI 60
D E+ F DVETT + R I+E + + ++ + ++TLV P DP +
Sbjct: 31 DLGEVPFVVVDVETTGLSSTSDR--IVEIALVRIEGGRV--VDEWATLVDPGRDPDPTFV 86
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-R 119
+ IT + + +PTFAD+A + L G + HN RF+ I + FA +G
Sbjct: 87 -------HHITAEMLSGAPTFADVAGEILSRLDGAVVVAHN-ARFEEGFIAQEFARVGIS 138
Query: 120 PAPEPKGTIDSLALLTQRFGRR---AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL- 174
AP P A+ T R R+ A + ++ S T +G+ H +L D R ++L
Sbjct: 139 TAPLP-------AVCTLRLARQVLAAPNFQLVSCCTVYGIELHDAHTALGDTRATAQLLP 191
Query: 175 ---KYCATVLFLESSLPDIFTVNSWVSPNATTRSR 206
++C LF +VN P A R+R
Sbjct: 192 RHQRWCE--LFAAHGSTVGVSVN---GPGALNRNR 221
>gi|423458293|ref|ZP_17435090.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X2-1]
gi|401147190|gb|EJQ54697.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X2-1]
Length = 315
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAVVYQK 167
Query: 177 CATV 180
CA++
Sbjct: 168 CASI 171
>gi|333897122|ref|YP_004470996.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112387|gb|AEF17324.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 1410
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 11/163 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT + I+E GA+ + K + + + T V P IS + GIT
Sbjct: 402 FDIETTGLSSINDN--IIEIGAVKI--KNFQIVDTFETFVNPQ--VHISKFITKLTGITD 455
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V P+ +I D + I HN FD I+ +G P +D+L
Sbjct: 456 DMVKEYPSIEEILPKFLDFIKDSILVAHNA-NFDVTFIKTKARNLGMEVDNP--VLDTLE 512
Query: 133 LLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
L++ + K+ ++A + G+ + HR++DD + E+
Sbjct: 513 -LSRHMYENLKNYKLDTVAQHLGVSLENHHRAVDDAKATAEIF 554
>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
gi|387901655|ref|YP_006331994.1| DNA polymerase III subunit epsilon [Burkholderia sp. KJ006]
gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
gi|387576547|gb|AFJ85263.1| DNA polymerase III epsilon subunit [Burkholderia sp. KJ006]
Length = 375
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 14/177 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+ F D+ETT + R I E G + + P + ++TLV P P I + G
Sbjct: 15 LVFVDLETTGGSPAEHR--ITEIGVVEIGPGHMS---TWTTLVNPGQP--IPPFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP-APEPKGTI 128
I+ D V +P+FA +A +F+ L G+++ HN FD +R F G P+ T+
Sbjct: 68 ISDDMVRDAPSFASLAPALFERLDGKLFVAHNA-SFDRGFLRAEFERAGLAFNPDVLCTV 126
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGL-GQQTHRSLDDVRMNLEVLKYCATVLFLE 184
L R R D +L +GL HR+L D + + + T++ LE
Sbjct: 127 KLSRALFPRESRHGLD----ALIERYGLVPAARHRALADADLIWQFWRQLHTLVPLE 179
>gi|423488700|ref|ZP_17465382.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BtB2-4]
gi|423494425|ref|ZP_17471069.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER057]
gi|423498785|ref|ZP_17475402.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER074]
gi|423661559|ref|ZP_17636728.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM022]
gi|401152039|gb|EJQ59480.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER057]
gi|401158867|gb|EJQ66256.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER074]
gi|401299932|gb|EJS05527.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM022]
gi|402433707|gb|EJV65757.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BtB2-4]
Length = 315
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA V
Sbjct: 168 CAAV 171
>gi|387790880|ref|YP_006255945.1| DNA polymerase III subunit epsilon family exonuclease [Solitalea
canadensis DSM 3403]
gi|379653713|gb|AFD06769.1| exonuclease, DNA polymerase III, epsilon subunit family [Solitalea
canadensis DSM 3403]
Length = 460
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 18/133 (13%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCN 68
A D+ETT + I E AI + K E + +Y TL+ P P I SL+
Sbjct: 9 AIVDIETT--GGYASNYGITEV-AIFIHNGK-EVIDSYETLINPGSSIPIHIQSLT---- 60
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI+ + V ++P+F+++A+ ++ +LH +++ HN+ FD + + G PK
Sbjct: 61 GISNEMVKNAPSFSEVAENIYQLLHDKVFVAHNV-NFDYSFLTHQLTTCGYQLQAPK--- 116
Query: 129 DSLALLTQRFGRR 141
L T R R+
Sbjct: 117 ----LCTVRLARK 125
>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
Length = 318
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRILGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 167 VYQKCAAI 174
>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
Length = 318
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 167 VYQKCAAI 174
>gi|146318210|ref|YP_001197922.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33]
gi|146320404|ref|YP_001200115.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33]
gi|386577547|ref|YP_006073952.1| DnaQ exonuclease [Streptococcus suis GZ1]
gi|386581549|ref|YP_006077953.1| Rad3-related DNA helicase [Streptococcus suis SS12]
gi|386587780|ref|YP_006084181.1| Rad3-related DNA helicase [Streptococcus suis A7]
gi|145689016|gb|ABP89522.1| Rad3-related DNA helicase [Streptococcus suis 05ZYH33]
gi|145691210|gb|ABP91715.1| Rad3-related DNA helicase [Streptococcus suis 98HAH33]
gi|292558009|gb|ADE31010.1| DnaQ exonuclease [Streptococcus suis GZ1]
gi|353733695|gb|AER14705.1| Rad3-related DNA helicase [Streptococcus suis SS12]
gi|354984941|gb|AER43839.1| Rad3-related DNA helicase [Streptococcus suis A7]
Length = 837
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M T+ + A D+E T G I++ G +LV + E + +Y+T + P EL+
Sbjct: 19 MKDTRTSNRYAVVDLEAT---GTGTDAKIIQIGIVLV--ENGEIIDSYATDINPY--ELL 71
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + +P F +A T++D++ I+ HN+ +FD + EA G
Sbjct: 72 DDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYE 130
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
P+ +D++ L+Q F + +LA + LG Q H ++ D
Sbjct: 131 LLTPR--VDTVE-LSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISD 174
>gi|359433732|ref|ZP_09224046.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20652]
gi|357919593|dbj|GAA60295.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20652]
Length = 718
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT + G R I E G + V K+ + +++LV P P I+SL+ GI+
Sbjct: 558 DIETTGGLKGGNR--ITEIGLVKVQHGKV--IDTWTSLVNPERHIPGFITSLT----GIS 609
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V ++P FA+IA + + L G I+ HN+ FD I++ G PK
Sbjct: 610 DSMVYNAPVFAEIAPLLLNKLAGSIFVAHNV-NFDYGFIKKECEVAGHFFKMPK------ 662
Query: 132 ALLTQRFGRRA----GDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
L T R+A + +L+ +F L + HR+L D E+L
Sbjct: 663 -LCTVVESRKAFKGLKSYSLGNLSAHFNLNLTSHHRALADATATAELL 709
>gi|325277453|ref|ZP_08143061.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
gi|324097411|gb|EGB95649.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
Length = 252
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 1 MGPTQDRSEIAFFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADP 57
M QD+ + D ETT +P G R I+E G + V ++L H Y R +D
Sbjct: 1 MEQQQDKRYV-ILDTETTGMPVGEGHR--IIEIGCVEVIGRRLTGRHFHVYLQPDRESDE 57
Query: 58 ELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI 117
I+ +GIT +V P FAD+AD F+ + G HN FD I FA +
Sbjct: 58 GAIN-----VHGITDAFLVGKPRFADVADEFFEFIQGATLVIHNAA-FDVGFINNEFALL 111
Query: 118 GR 119
G+
Sbjct: 112 GQ 113
>gi|386579485|ref|YP_006075890.1| Rad3-related DNA helicase [Streptococcus suis JS14]
gi|319757677|gb|ADV69619.1| Rad3-related DNA helicase [Streptococcus suis JS14]
Length = 837
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M T+ + A D+E T G I++ G +LV + E + +Y+T + P EL+
Sbjct: 19 MKDTRTSNRYAVVDLEAT---GTGTDAKIIQIGIVLV--ENGEIIDSYATDINPY--ELL 71
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + +P F +A T++D++ I+ HN+ +FD + EA G
Sbjct: 72 DDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYE 130
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
P+ +D++ L+Q F + +LA + LG Q H ++ D
Sbjct: 131 LLTPR--VDTVE-LSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISD 174
>gi|119944269|ref|YP_941949.1| DNA polymerase III subunit epsilon [Psychromonas ingrahamii 37]
gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
Length = 239
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E G + V ++L H Y R DPE I+
Sbjct: 12 LDTETTGMNKGGTIYVGHRIIEIGCVEVINRRLTGRHFHVYVKPDREIDPEAIA-----V 66
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG---RPAPEP 124
+GIT + + P F+DIAD + + G HN FD + + F + +P E
Sbjct: 67 HGITDEFLHDKPAFSDIADEFIEFIKGAELVIHNA-PFDVGFMDQEFRFLNKRTKPTAEI 125
Query: 125 KGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFL 183
D+L + + + G+RA + +L G+ + HR L ++ E+L A V L
Sbjct: 126 STITDTLVMARKMYPGKRAS---LDALCRELGIDNK-HRVLHGALLDAEIL---ADVYLL 178
Query: 184 ESSLPDIFTVNSWVSPNATTRSRSNAKSSP 213
+ ++S + T R SP
Sbjct: 179 MTGGQKKLNLSSSGQNDTNTGKRVRKTQSP 208
>gi|350544020|ref|ZP_08913686.1| DNA polymerase III epsilon subunit [Candidatus Burkholderia kirkii
UZHbot1]
gi|350528209|emb|CCD36249.1| DNA polymerase III epsilon subunit [Candidatus Burkholderia kirkii
UZHbot1]
Length = 245
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + + G R I+E G + + ++ LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNAKTGDR--IIEIGCVELINRRFTGNNLHIYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP--KG 126
G+T + + P FA+IA + D + G HN FD + FA +G P G
Sbjct: 58 GLTTEFLSDKPKFAEIAAQLRDFITGAELIIHNA-PFDIGFLDMEFALLGLPKVSEMCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
IDSLA Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDSLAQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
Length = 318
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 58 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNM 112
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 113 LG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 170
Query: 177 CATV 180
CA V
Sbjct: 171 CAAV 174
>gi|126667360|ref|ZP_01738332.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
gi|126628116|gb|EAZ98741.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
Length = 236
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D ETT P + I+E G + + + L NY V P + + +V +GIT
Sbjct: 6 LDTETT-GIDPNEGHRIIEIGCVELVERTLTG-RNYHVYVNPGRE--VEAEAVAIHGITN 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI--GRPAPEPKGTIDS 130
+ + P FA +AD F+ + G HN FD + F + GR E G +D+
Sbjct: 62 EFLADKPLFAVVADEFFEFIRGAELVIHNAA-FDVGFMDAEFGRLDGGRKTAEHCGIVDT 120
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
LA+ +R + ++ +L +G+ ++R L ++ E+L
Sbjct: 121 LAIARKRHPGQKNNLN--ALCKRYGV-DNSNRELHGALLDAEIL 161
>gi|423207434|ref|ZP_17193990.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC34]
gi|404620501|gb|EKB17398.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC34]
Length = 244
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 23/174 (13%)
Query: 12 FFDVETTV------PTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSL 63
D ETT P G R I+E G + V +KL H Y RP DPE
Sbjct: 11 ILDTETTGMNTGGGPVYLGHR--IIEIGCVEVINRKLTGNHYHVYIKPDRPVDPE----- 63
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PA 121
+V+ +GIT + + P+F+ IAD + + G HN FD + + F+++G
Sbjct: 64 AVQVHGITDEFLRDKPSFSQIADEFLEFIRGAELIAHNA-PFDVSFMDYEFSKLGLNFKT 122
Query: 122 PEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+ D+LA+ F G+R + L +G+ +HR+L ++ E+L
Sbjct: 123 ADICTITDTLAMARDLFPGKRN---NLDVLCDRYGI-DNSHRTLHGALLDAEIL 172
>gi|423599107|ref|ZP_17575107.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD078]
gi|401236091|gb|EJR42557.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD078]
Length = 315
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA V
Sbjct: 168 CAAV 171
>gi|386583802|ref|YP_006080205.1| Rad3-related DNA helicase [Streptococcus suis D9]
gi|353735948|gb|AER16957.1| Rad3-related DNA helicase [Streptococcus suis D9]
Length = 837
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M T+ + A D+E T G I++ G +LV + E + +Y+T + P EL+
Sbjct: 19 MKDTRTSNRYAVVDLEAT---GTGTDAKIIQIGIVLV--ENGEIIDSYATDINPY--ELL 71
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + +P F +A T++D++ I+ HN+ +FD + EA G
Sbjct: 72 DDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYE 130
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
P+ +D++ L+Q F + +LA + LG Q H ++ D
Sbjct: 131 LLTPR--VDTVE-LSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISD 174
>gi|330832545|ref|YP_004401370.1| Rad3-related DNA helicase [Streptococcus suis ST3]
gi|329306768|gb|AEB81184.1| Rad3-related DNA helicase [Streptococcus suis ST3]
Length = 837
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
M T+ + A D+E T G I++ G +LV + E + +Y+T + P EL+
Sbjct: 19 MKDTRTSNRYAVVDLEAT---GTGTDAKIIQIGIVLV--ENGEIIDSYATDINPY--ELL 71
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
GIT + +P F +A T++D++ I+ HN+ +FD + EA G
Sbjct: 72 DDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYE 130
Query: 121 APEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDD 166
P+ +D++ L+Q F + +LA + LG Q H ++ D
Sbjct: 131 LLTPR--VDTVE-LSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISD 174
>gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
gi|387868686|ref|YP_005700155.1| DNA polymerase III subunit epsilon [Edwardsiella tarda FL6-60]
gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60]
Length = 243
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFT-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PAPEPK 125
+GI+ D ++ P+FA++AD + G HN FD + FA++GR P E
Sbjct: 66 HGISDDFLLDKPSFAEVADEFLAFIRGAELVIHNA-PFDIGFMDYEFAKLGRDLPKTETF 124
Query: 126 GTI-DSLALLTQRF-GRR 141
TI DSL + + F G+R
Sbjct: 125 CTITDSLVMARRLFPGKR 142
>gi|403745578|ref|ZP_10954373.1| DNA polymerase III, alpha subunit [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121296|gb|EJY55610.1| DNA polymerase III, alpha subunit [Alicyclobacillus hesperidum
URH17-3-68]
Length = 1335
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 21/198 (10%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
P D + FD ETT + ++E A+ V + E + Y++L+ P P +S
Sbjct: 315 PFTDETTFVVFDTETT--GLNAREDTLIEIAAVKV--RGGEIVDTYASLIDPERP--LSP 368
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
GI+ D V P AD+ + + + G I HN FD + + +G PA
Sbjct: 369 KITELTGISNDMVKGQPKLADVLEKFREFVQGAILVAHNA-EFDVGFLNQCAERLGMPAW 427
Query: 123 EPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQ-QTHRSLDD----VRMNLEVLKY 176
E + ID+LAL + G + + K+ +L F + HR+L D ++ L +LK
Sbjct: 428 E-EPVIDTLALARALYPGEK--NYKLKTLTQKFSVELVNHHRALADSEATAKVFLHMLKD 484
Query: 177 CATVLFLESSLPDIFTVN 194
C E L D+ +N
Sbjct: 485 CK-----ERGLVDLSHLN 497
>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 318
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 167 VYQKCAAI 174
>gi|359144498|ref|ZP_09178451.1| DNA polymerase III subunit epsilon [Streptomyces sp. S4]
gi|421738209|ref|ZP_16176576.1| DNA polymerase III, epsilon subunit [Streptomyces sp. SM8]
gi|406693373|gb|EKC97027.1| DNA polymerase III, epsilon subunit [Streptomyces sp. SM8]
Length = 324
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + I+ G + E H Y TLV P DP V +G
Sbjct: 20 AVVDVETTGLARDDR---IVSAGVYQLDALGRVEDHWY-TLVNPERDPG-----PVWIHG 70
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + +P F DI+D + L R+ HN FD + + +A R AP + +
Sbjct: 71 LTTGVLKDAPLFKDISDELSARLADRVLVAHNAA-FDWSMLAREYARAERVAPV-RQRLC 128
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK---YCATVLFLES 185
++A L++ G + K+ SLA +FG+ Q+ H +LDD R+ E + A +
Sbjct: 129 TIA-LSKELGLPLPNHKLESLAAHFGVVQERAHHALDDARVLAEAFRPSLVAAAGGGVRL 187
Query: 186 SLPDIFTVNSWVSPNATTR 204
L + + W P AT R
Sbjct: 188 PLLECRPLTEWSEPPATPR 206
>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
Length = 205
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 4 TQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSL 63
T D + D+ETT P I+E AI + L + +L++P + ELI
Sbjct: 5 TTDEAVFTIIDIETT-GFNPESN-DIIEIAAIKYQGNII--LDRFWSLIKP-EIELIPEH 59
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI-GRPAP 122
+ GIT V+ PT + + + I GHNI RFD A + + EI +
Sbjct: 60 ISKLTGITTAMVIDQPTVDKVLPDFLNFIENTILVGHNI-RFDLAFLNKKAKEILNKTIK 118
Query: 123 EPKGTIDSLALLTQRFGRRAGDMKMASLATYFGL-GQQTHRSLDDVRMNLEVLKYCATVL 181
P D LA ++ +AS+A +F + + HR++ D +NLE+ + +
Sbjct: 119 NPFICTDHLA---RKILSDIDSKSLASIAQHFNIPFSRQHRAMYDAEVNLEI--FIKMLR 173
Query: 182 FLE 184
FLE
Sbjct: 174 FLE 176
>gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
02_1987]
gi|289759871|ref|ZP_06519249.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
gi|294995379|ref|ZP_06801070.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 210]
gi|298527188|ref|ZP_07014597.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis 94_M4241A]
gi|385992928|ref|YP_005911226.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CCDC5180]
gi|385996567|ref|YP_005914865.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CCDC5079]
gi|424806274|ref|ZP_18231705.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
W-148]
gi|424945591|ref|ZP_18361287.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
NCGM2209]
gi|289688078|gb|EFD55566.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
02_1987]
gi|289715435|gb|EFD79447.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
gi|298496982|gb|EFI32276.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis 94_M4241A]
gi|326905550|gb|EGE52483.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
W-148]
gi|339296521|gb|AEJ48632.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CCDC5079]
gi|339300121|gb|AEJ52231.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CCDC5180]
gi|358230106|dbj|GAA43598.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
NCGM2209]
Length = 329
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AFDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DDVR+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|399545146|ref|YP_006558454.1| DNA polymerase III subunit epsilon [Marinobacter sp. BSs20148]
gi|399160478|gb|AFP31041.1| DNA polymerase III subunit epsilon [Marinobacter sp. BSs20148]
Length = 236
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D ETT P + I+E G + + + L NY V P + + +V +GIT
Sbjct: 6 LDTETT-GIDPNEGHRIIEIGCVELVERALTG-RNYHVYVNPGRQ--VEAEAVAIHGITN 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI--GRPAPEPKGTIDS 130
+ + P FA +AD F+ + G HN FD + F + GR E G +D+
Sbjct: 62 EFLADKPLFAVVADEFFEFIRGAELVIHNAA-FDVGFMDAEFGRLDGGRKTAEHCGIVDT 120
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
LA+ +R + ++ +L +G+ ++R L ++ E+L
Sbjct: 121 LAIARKRHPGQKNNLN--ALCKRYGV-DNSNRELHGALLDAEIL 161
>gi|375259128|ref|YP_005018298.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca KCTC 1686]
gi|397656099|ref|YP_006496801.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca E718]
gi|365908606|gb|AEX04059.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca KCTC 1686]
gi|394344727|gb|AFN30848.1| DNA polymerase III epsilon subunit [Klebsiella oxytoca E718]
Length = 243
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P F D+ D D + G HN FD + FA++ R P+
Sbjct: 66 HGIADEFLMDKPAFGDVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFAKLNRGIPKTDTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|365969123|ref|YP_004950685.1| DNA polymerase III subunit epsilon [Enterobacter cloacae EcWSU1]
gi|365748036|gb|AEW72263.1| DNA polymerase III subunit epsilon [Enterobacter cloacae EcWSU1]
Length = 246
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD + + G HN FD + F+++ R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFLEYIKGAELIIHNA-SFDIGFMDYEFSKLHRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|358448996|ref|ZP_09159488.1| DNA polymerase III, epsilon subunit [Marinobacter manganoxydans
MnI7-9]
gi|357226791|gb|EHJ05264.1| DNA polymerase III, epsilon subunit [Marinobacter manganoxydans
MnI7-9]
Length = 236
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 10/164 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D ETT P + I+E G + + ++L NY + P D E + + ++ +GIT
Sbjct: 6 LDTETT-GIDPAEGHRIIEIGCVELMERQLTG-RNYHVYINP-DRE-VEAEAITVHGITN 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG--RPAPEPKGTIDS 130
+ + P FA+IAD F+ + G HN FD + FA + R + G +DS
Sbjct: 62 EFLADKPRFAEIADEFFEFIKGAELVIHNAA-FDVGFMDSEFARLKPVRKTADHCGIVDS 120
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
LA+ R + ++ +L +G+ ++R L ++ E+L
Sbjct: 121 LAIARARHPGQKNNLD--ALCKRYGV-DNSNRDLHGALLDAEIL 161
>gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
Length = 318
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 58 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNM 112
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 113 LG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 170
Query: 177 CATV 180
CA V
Sbjct: 171 CAAV 174
>gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2]
Length = 581
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Query: 9 EIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
E+ F D+ETT T + I E GA+ + E L + +LV+P + +IS R
Sbjct: 28 EVTFVIVDLETTGTT--AGKSEITEIGAVKT--RGGEVLGEFQSLVKPEE-SVISPFVAR 82
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
GIT V +P+ + + + G + HN FD IR A ++ P+P
Sbjct: 83 LTGITHAMVDDAPSIRSVLPSFLEFCVGAVLVAHNA-PFDIGFIRSACEKLDYHWPQPT- 140
Query: 127 TIDSLALLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+D++ L + R + K+++LA +FG HR+L D + EVL
Sbjct: 141 VLDTVTLSRRVVSRDEVRNHKLSTLAAHFGTEVSPDHRALSDAKATGEVL 190
>gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
Length = 318
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 58 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNM 112
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 113 LG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 170
Query: 177 CATV 180
CA V
Sbjct: 171 CAAV 174
>gi|455738322|ref|YP_007504588.1| DNA polymerase III epsilon subunit [Morganella morganii subsp.
morganii KT]
gi|455419885|gb|AGG30215.1| DNA polymerase III epsilon subunit [Morganella morganii subsp.
morganii KT]
Length = 244
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLVRP---ADPELISSLSVR 66
D ETT + G + I+E GA+ V ++L N+ +RP DPE S
Sbjct: 11 LDTETTGMNKLGAHYEGHNIIEIGAVEVINRRLTG-RNFHLYIRPDRLVDPEAFS----- 64
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR---PAPE 123
+GI+ + ++ P FADIAD + + G HN FD + F ++ R P E
Sbjct: 65 VHGISDEFLMDKPVFADIADEFIEFIRGAELVIHNA-PFDIGFMDYEFRKLNRGIPPTAE 123
Query: 124 PKGTIDSLALLTQRF-GRR 141
DSL L Q F G+R
Sbjct: 124 FCTITDSLTLARQLFPGKR 142
>gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 945
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLS 64
++ A D+ETT T I++F LV K+ E Y + + P PE I
Sbjct: 4 KTTYAVVDIETT-GTDMSVDNRIIQFSCTLVAHGKIVE--TYVSDINPQREVPERI---- 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
++ GITP+ + +PTF ++ ++ +L G ++ HN+ FD + F +G P +
Sbjct: 57 IQLTGITPERLKKAPTFDQVSSKLYKLLSGTVFVAHNV-NFDFPFLNGEFQRVGYPELDI 115
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGL 156
+ ID++ L+Q ++ L+ YF +
Sbjct: 116 EA-IDTVT-LSQILLPTLSSYRLQDLSAYFNI 145
>gi|419642296|ref|ZP_14174100.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni ATCC 33560]
gi|380625066|gb|EIB43674.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni ATCC 33560]
Length = 253
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGSVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|365825544|ref|ZP_09367498.1| hypothetical protein HMPREF0045_01134 [Actinomyces graevenitzii
C83]
gi|365258002|gb|EHM88023.1| hypothetical protein HMPREF0045_01134 [Actinomyces graevenitzii
C83]
Length = 283
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT P Q AI+E G +L+ P E+L + +LV P R +GI
Sbjct: 75 AVVDLETT-GLEP-QDEAIIEVGVVLLDPHGREQL-RWDSLVNPHR----HPGPTRIHGI 127
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFD 106
TPD + +P +A + ++L GR+ HNI RFD
Sbjct: 128 TPDDLTYAPELGTLAPALVELLRGRVLVAHNI-RFD 162
>gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC
19977]
gi|397678418|ref|YP_006519953.1| DNA polymerase III polC-type [Mycobacterium massiliense str. GO 06]
gi|418250580|ref|ZP_12876824.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus 47J26]
gi|418418535|ref|ZP_12991720.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus subsp.
bolletii BD]
gi|419710975|ref|ZP_14238439.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus M93]
gi|419713740|ref|ZP_14241164.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus M94]
gi|420862142|ref|ZP_15325538.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0303]
gi|420866727|ref|ZP_15330114.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0726-RA]
gi|420876030|ref|ZP_15339406.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0726-RB]
gi|420912963|ref|ZP_15376275.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0125-R]
gi|420914159|ref|ZP_15377468.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0125-S]
gi|420921241|ref|ZP_15384538.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0728-S]
gi|420925050|ref|ZP_15388342.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-1108]
gi|420934438|ref|ZP_15397711.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-151-0930]
gi|420935682|ref|ZP_15398952.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-152-0914]
gi|420944698|ref|ZP_15407953.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-153-0915]
gi|420949390|ref|ZP_15412639.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-154-0310]
gi|420949987|ref|ZP_15413234.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0626]
gi|420958976|ref|ZP_15422210.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0107]
gi|420959518|ref|ZP_15422749.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-1231]
gi|420964541|ref|ZP_15427762.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0810-R]
gi|420975396|ref|ZP_15438584.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0212]
gi|420980777|ref|ZP_15443950.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0728-R]
gi|420994908|ref|ZP_15458054.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0307]
gi|420995873|ref|ZP_15459016.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0912-R]
gi|421000389|ref|ZP_15463522.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0912-S]
gi|421005221|ref|ZP_15468340.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0119-R]
gi|421010772|ref|ZP_15473874.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0122-R]
gi|421021500|ref|ZP_15484553.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0731]
gi|421026593|ref|ZP_15489633.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0930-R]
gi|421032385|ref|ZP_15495411.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0930-S]
gi|421038112|ref|ZP_15501123.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0116-R]
gi|421046377|ref|ZP_15509377.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0116-S]
gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium
abscessus]
gi|353449816|gb|EHB98212.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus 47J26]
gi|364001708|gb|EHM22900.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus subsp.
bolletii BD]
gi|382939865|gb|EIC64191.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus M93]
gi|382946438|gb|EIC70724.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus M94]
gi|392067505|gb|EIT93353.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0726-RB]
gi|392075058|gb|EIU00892.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0726-RA]
gi|392077303|gb|EIU03134.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0303]
gi|392114957|gb|EIU40726.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0125-R]
gi|392125653|gb|EIU51406.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0125-S]
gi|392131077|gb|EIU56823.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0728-S]
gi|392132850|gb|EIU58595.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-151-0930]
gi|392146304|gb|EIU72028.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-153-0915]
gi|392147189|gb|EIU72910.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-152-0914]
gi|392147458|gb|EIU73178.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-1108]
gi|392150431|gb|EIU76144.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-154-0310]
gi|392165073|gb|EIU90760.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0626]
gi|392175522|gb|EIV01184.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0212]
gi|392176575|gb|EIV02233.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0728-R]
gi|392181010|gb|EIV06662.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0307]
gi|392191693|gb|EIV17318.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0912-R]
gi|392202543|gb|EIV28139.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0912-S]
gi|392204716|gb|EIV30301.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0119-R]
gi|392214815|gb|EIV40364.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0122-R]
gi|392218343|gb|EIV43875.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0731]
gi|392226326|gb|EIV51840.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0116-R]
gi|392232918|gb|EIV58418.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0930-S]
gi|392235830|gb|EIV61328.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0116-S]
gi|392236511|gb|EIV62007.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0930-R]
gi|392248702|gb|EIV74178.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0107]
gi|392256730|gb|EIV82184.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-1231]
gi|392258818|gb|EIV84260.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0810-R]
gi|395456683|gb|AFN62346.1| DNA polymerase III polC-type [Mycobacterium massiliense str. GO 06]
Length = 327
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
+G+TP+ + P F+DIA + +L GR HN+ FD + + +G A P
Sbjct: 64 VHGLTPEMLEGQPEFSDIAPDLIALLRGRTLVAHNV-GFDYSFLAAEAELVG--AELPTE 120
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
+ LT+R ++++ +LA ++G+ Q + H + DD R+ EVL
Sbjct: 121 AVMCTVELTRRLELDTPNLRLETLAAHWGVEQLKAHDAYDDARVLAEVL 169
>gi|423453105|ref|ZP_17429958.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X1-1]
gi|401138785|gb|EJQ46350.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X1-1]
Length = 315
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PSRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDIRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|423127528|ref|ZP_17115207.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5250]
gi|376394567|gb|EHT07217.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5250]
Length = 246
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P F D+ D D + G HN FD + FA++ R P+
Sbjct: 69 HGIADEFLMDKPAFGDVVDEFIDYIRGAELVIHNA-SFDIGFMDYEFAKLNRGIPKTDTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|348589647|ref|YP_004874109.1| DNA polymerase III subunit epsilon [Taylorella asinigenitalis MCE3]
gi|347973551|gb|AEP36086.1| DNA polymerase III epsilon subunit [Taylorella asinigenitalis MCE3]
Length = 238
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNG 69
D ETT + + G R I+E G + + KL +LH Y R +DP+ ++R +G
Sbjct: 6 LDTETTGLDYKSGHR--IIELGCVELLDGKLTGNDLHIYFNPERDSDPD-----ALRVHG 58
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP--KGT 127
+T + + P FAD AD + + L G HN FD + F+ G+P + G
Sbjct: 59 LTTEFLSDKPLFADKADQIIEYLSGAQLIIHNA-AFDMGFLNTEFSLCGKPLLDSFINGF 117
Query: 128 IDS 130
IDS
Sbjct: 118 IDS 120
>gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
Length = 318
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 58 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNM 112
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 113 LG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 170
Query: 177 CATV 180
CA V
Sbjct: 171 CAAV 174
>gi|365868304|ref|ZP_09407856.1| DNA polymerase III subunit epsilon [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|414579599|ref|ZP_11436742.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-1215]
gi|420880711|ref|ZP_15344078.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0304]
gi|420885788|ref|ZP_15349148.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0421]
gi|420889541|ref|ZP_15352889.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0422]
gi|420892414|ref|ZP_15355758.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0708]
gi|420900622|ref|ZP_15363953.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0817]
gi|420906493|ref|ZP_15369811.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-1212]
gi|420970197|ref|ZP_15433398.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0921]
gi|421047140|ref|ZP_15510138.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense CCUG 48898 = JCM 15300]
gi|364000718|gb|EHM21915.1| DNA polymerase III subunit epsilon [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392081551|gb|EIU07377.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0421]
gi|392085620|gb|EIU11445.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0304]
gi|392087289|gb|EIU13111.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0422]
gi|392097983|gb|EIU23777.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0817]
gi|392104397|gb|EIU30183.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-1212]
gi|392108295|gb|EIU34075.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0708]
gi|392124123|gb|EIU49884.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-1215]
gi|392176135|gb|EIV01796.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0921]
gi|392243692|gb|EIV69175.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense CCUG 48898]
Length = 327
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
+G+TP+ + P F+DIA + +L GR HN+ FD + + +G A P
Sbjct: 64 VHGLTPEMLEGQPEFSDIAPDLIALLRGRTLVAHNV-GFDYSFLAAEAELVG--AELPTE 120
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
+ LT+R ++++ +LA ++G+ Q + H + DD R+ EVL
Sbjct: 121 AVMCTVELTRRLELDTPNLRLETLAAHWGVEQLKAHDAYDDARVLAEVL 169
>gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
DSM 20595]
gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
DSM 20595]
Length = 597
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
DVETT +PG ++ E GA+ V + + + +LV P P I + R GIT
Sbjct: 51 DVETT-GEKPGLH-SLTEIGAVKV--RGGTVIGEFGSLVNPGVP--IPAFITRLTGITTG 104
Query: 74 AVVSSPTFADIADTVFDILHGR---IWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
V ++P+ ++ + + + G I+ HN FD ++R A + +G P K ID+
Sbjct: 105 MVATAPSLGEVLVSFIEFVGGDPDLIFVAHNA-PFDMGQLRGAASALGLAFPNRK-VIDT 162
Query: 131 LALLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+ L + F + + K+++LA + +HR+LDD R ++VL
Sbjct: 163 VKLSRRVFMKDEVPNHKLSTLARFVNATISPSHRALDDARATVDVL 208
>gi|442609247|ref|ZP_21023986.1| DNA polymerase III epsilon subunit [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
gi|441749291|emb|CCQ10048.1| DNA polymerase III epsilon subunit [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
Length = 723
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 47 NYSTLVRPAD--PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILR 104
++S+LV P P+ I+ L+ GI+ D V ++PTF ++ADT+ + L I+ HN+
Sbjct: 588 SWSSLVNPKRHIPKFITGLT----GISNDMVQNAPTFTELADTIEEKLSEGIFVAHNV-N 642
Query: 105 FDCARIREAFAEIGRPAPEPKGTIDSLA 132
FD I+++ +GR PK LA
Sbjct: 643 FDYGFIKQSLLRLGRHLKRPKLCTVQLA 670
>gi|403529938|ref|YP_006664467.1| DNA polymerase III subunit epsilon [Bartonella quintana RM-11]
gi|403232010|gb|AFR25753.1| DNA polymerase III epsilon chain [Bartonella quintana RM-11]
Length = 235
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE--LISSLSVRCN 68
FD ETT + R I+E G + + + L + H Y +P+ +IS +V +
Sbjct: 6 FDTETTGLDKEKDR--IIEIGCVEMVDRYLTGKRFHVY------LNPQGVVISDEAVAIH 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
G+T + + + +F+DIAD + + ++G HN FD + + +P +
Sbjct: 58 GLTNERLKNEKSFSDIADELLEFINGATMVAHNA-SFDIGFLNAELGRVNKPLISVDNIL 116
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ ++F G + L FG+ +HR ++ E+L
Sbjct: 117 DTLAMARRKFP--MGPNSLDVLCKRFGI-DNSHRVFHGALLDAEIL 159
>gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella
australiensis 50-1 BON]
gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella
australiensis 50-1 BON]
Length = 1427
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 11/175 (6%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
S++ D+ETT + I+E GA+ + K ++ +S+ + P P I V
Sbjct: 413 SDMVVLDIETTGLNAGTDK--IIEIGAVRIKDGKYKD--EFSSFINPHVP--IPPSIVNL 466
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT D V ++P D+ + + HN +FD IR+ + P
Sbjct: 467 TGITDDMVSNAPDEGDVLQRFMEFAGDAVLVAHN-AQFDMGFIRQHGQKYNLKFANP--V 523
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCATVL 181
+D+L L Q F + K+ +LA + + HR++DD R E+L C L
Sbjct: 524 LDTLTLARQLF-KGLKHYKLDTLAHHLHIDMDNHHRAVDDARTAAEILFRCMDKL 577
>gi|420989481|ref|ZP_15452637.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0206]
gi|421015877|ref|ZP_15478949.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0122-S]
gi|392183760|gb|EIV09411.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0206]
gi|392217817|gb|EIV43350.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0122-S]
Length = 313
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
+G+TP+ + P F+DIA + +L GR HN+ FD + + +G A P
Sbjct: 50 VHGLTPEMLEGQPEFSDIAPDLIALLRGRTLVAHNV-GFDYSFLAAEAELVG--AELPTE 106
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
+ LT+R ++++ +LA ++G+ Q + H + DD R+ EVL
Sbjct: 107 AVMCTVELTRRLELDTPNLRLETLAAHWGVEQLKAHDAYDDARVLAEVL 155
>gi|365867336|ref|ZP_09406919.1| DNA polymerase III subunit epsilon [Streptomyces sp. W007]
gi|364003202|gb|EHM24359.1| DNA polymerase III subunit epsilon [Streptomyces sp. W007]
Length = 340
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHN----YSTLVRPA-DP 57
PT A DVETT R + + + +L+ L N + TLV P DP
Sbjct: 14 PTAYPQGYAVVDVETTGLARDDRIISAAVY--------RLDALGNVEDHWYTLVNPERDP 65
Query: 58 ELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI 117
V +G+T D + +P F D+A + + L R+ HN FD + I +A
Sbjct: 66 G-----PVWIHGLTSDVLEGAPLFPDVAAELSERLKDRVLVAHNAA-FDWSMIAREYARA 119
Query: 118 GRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFG-LGQQTHRSLDDVRMNLEVLK 175
AP + + ++A L + + K+ASLA +FG + QQ H +LDD R+ E +
Sbjct: 120 SVIAPV-EHRLCTIA-LAKELRLPLPNHKLASLAAHFGVVQQQAHHALDDARVLAEAFR 176
>gi|238921062|ref|YP_002934577.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella
ictaluri 93-146]
gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella
ictaluri 93-146]
Length = 243
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFT-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PAPEPK 125
+GI+ D ++ P+FA++AD + G HN FD + FA++GR P E
Sbjct: 66 HGISDDFLLDKPSFAEVADEFLAFIRGAELVIHNA-PFDIGFMDYEFAKLGRDLPKTETF 124
Query: 126 GTI-DSLALLTQRF-GRR 141
TI DSL + + F G+R
Sbjct: 125 CTITDSLVMARRLFPGKR 142
>gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
gi|365834752|ref|ZP_09376194.1| DNA polymerase III, epsilon subunit [Hafnia alvei ATCC 51873]
gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
gi|364568583|gb|EHM46224.1| DNA polymerase III, epsilon subunit [Hafnia alvei ATCC 51873]
Length = 244
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPE-----AYGV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ D ++ PTFADIAD + + G HN FD + F ++ R P+ +
Sbjct: 66 HGISDDFLLDKPTFADIADEFLEFIRGAELVIHNA-PFDIGFMDYEFRKLNRDIPKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSL + + F G+R
Sbjct: 125 CKITDSLVMARRLFPGKR 142
>gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
Length = 318
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++ +
Sbjct: 58 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIIAHNA-SFDMRFLKSNVSM 112
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G P P+ K ID++ L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 113 LGLPEPQNK-VIDTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 170
Query: 177 CATV 180
CA++
Sbjct: 171 CASI 174
>gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
PsJN]
Length = 244
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ILE G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--ILELGCVEMVNRRLTGNNLHFYINPERESDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP--KG 126
G+T + + P FA+IAD D + HN FD + FA +G P +
Sbjct: 58 GLTTEFLSDKPKFAEIADQFRDFIQDADLIIHNA-PFDIGFLDAEFALLGLPPVKTYCGE 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+LA Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 IIDTLARAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|399117274|emb|CCG20088.1| DNA polymerase III, epsilon subunit [Taylorella asinigenitalis
14/45]
Length = 238
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNG 69
D ETT + + G R I+E G + + KL +LH Y R +DP+ ++R +G
Sbjct: 6 LDTETTGLDYKSGHR--IIELGCVELLDGKLTGNDLHIYFNPERDSDPD-----ALRVHG 58
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP--KGT 127
+T + + P FAD AD + + L G HN FD + F+ G+P + G
Sbjct: 59 LTTEFLSDKPLFADKADQIIEYLSGAQLIIHNA-AFDMGFLNTEFSLCGKPLLDSFINGF 117
Query: 128 IDS 130
IDS
Sbjct: 118 IDS 120
>gi|384099079|ref|ZP_10000183.1| DNA polymerase III subunit epsilon [Imtechella halotolerans K1]
gi|383834211|gb|EID73655.1| DNA polymerase III subunit epsilon [Imtechella halotolerans K1]
Length = 445
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 77/189 (40%), Gaps = 26/189 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT GQ I E K+ + +++LV P P+ I++L+ GI
Sbjct: 7 DIETT-----GQGNKITEISIFKYDGDKI--VDEFTSLVNPESYIPDYITALT----GID 55
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V ++PTF D+AD + I I+ HN+ FD IR F IG K
Sbjct: 56 NHMVSNAPTFKDLADNILSITEACIFVAHNV-NFDYTIIRNEFKAIGIDFTRKK------ 108
Query: 132 ALLTQRFGRR----AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLESS 186
L T R R+ + L T G+ + HR+ D + + + K ES
Sbjct: 109 -LCTIRLARKLIPGHHSYSLGKLCTALGITIEDRHRARGDAQATVTLFKQILETKDSESV 167
Query: 187 LPDIFTVNS 195
+ D NS
Sbjct: 168 ISDFLKKNS 176
>gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
MSMB43]
gi|424903985|ref|ZP_18327495.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
MSMB43]
gi|390929963|gb|EIP87365.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
MSMB43]
Length = 241
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARAGDR--IIEVGCVELLNRRLTGSNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA--PEPKG 126
G+T + + P FA+I D + D + HN FD + FA +G P+ G
Sbjct: 58 GLTTEFLSDKPKFAEIVDQLRDFVRDAELIIHNA-PFDLGFLDAEFALLGLPSFTDHCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+L Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|421725224|ref|ZP_16164422.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca M5al]
gi|410374011|gb|EKP28694.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca M5al]
Length = 243
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P F D+ D D + G HN FD + FA++ R P+
Sbjct: 66 HGIADEFLMDKPAFGDVVDEFIDYIRGAELVIHNA-SFDIGFMDYEFAKLNRGIPKTDTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|365540520|ref|ZP_09365695.1| DNA polymerase III subunit epsilon [Vibrio ordalii ATCC 33509]
Length = 247
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 10 IAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
I D ETT R G + I+E GA+ + +KL H + ++P D E I ++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRH-FHVYLKP-DRE-IQLEAI 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNI---LRFDCARIREAFAEIGRPAP 122
+GIT + +V P + D+ D + G HN + F R+ A+IG+
Sbjct: 69 EIHGITDEFLVDKPQYRDVHQEFLDFIKGAELVAHNAPFDVGFMDYEFRKLDAKIGKTEQ 128
Query: 123 EPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
K T D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 129 YCKVT-DTLAMAKRIFPGKRN---NLDILCDRYGI-DNSHRTLHGALLDAEIL 176
>gi|416119756|ref|ZP_11594932.1| Exonuclease2C possibly dna polymerase III epsilon [Campylobacter
concisus UNSWCD]
gi|384576888|gb|EIF06202.1| Exonuclease2C possibly dna polymerase III epsilon [Campylobacter
concisus UNSWCD]
Length = 267
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 20/173 (11%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELISSLSVRC 67
E D+ETT T GQ I+E GAI + K E+ + + V + PE I+ L+
Sbjct: 75 EFCVVDIETTGGTTNGQ---IIEIGAIKM--KNGTEIGRFESFVAASVVPENITELT--- 126
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GI +V +P ++ + L ++ HN+ FD I + EIG G
Sbjct: 127 -GIRASDLVGAPNLLNVLERFKIFLGTSVFIAHNV-NFDYGFISHSLNEIGL------GI 178
Query: 128 IDSLALLTQRFGRR---AGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
+ + L T RR + + SL G+ HR+L+D E+ K C
Sbjct: 179 LLNRKLCTIDLSRRTIASQKYGLGSLKELLGINNTHHRALNDAVAAAEIFKVC 231
>gi|120554453|ref|YP_958804.1| DNA polymerase III subunit epsilon [Marinobacter aquaeolei VT8]
gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
Length = 236
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 10/164 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D ETT P + I+E G + V ++L NY + P + + ++ +GIT
Sbjct: 6 LDTETT-GIDPNEGHRIIEIGCVEVIERELTG-RNYHVYINPERE--VEAEAITVHGITN 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG--RPAPEPKGTIDS 130
+ + P FA++AD F+ + G HN FD + FA + R + G +DS
Sbjct: 62 EFLADKPKFAEVADEFFEFIKGAELVIHNAA-FDVGFMDSEFARLKPVRKTADHCGIVDS 120
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
LA+ ++ + ++ +L +G+ ++R L ++ E+L
Sbjct: 121 LAIARKKHPGQKNNLD--ALCKRYGV-DNSNRDLHGALLDAEIL 161
>gi|423469803|ref|ZP_17446547.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-2]
gi|402437882|gb|EJV69903.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-2]
Length = 315
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PSRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588]
gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM
2588]
Length = 456
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 45 LHNYSTLVRPA--DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNI 102
+ Y TL+ P P I SL+ GIT + V ++P F ++A +F +LH +I+ HN+
Sbjct: 33 VQQYETLINPGVPIPRYIQSLT----GITDEMVANAPAFDEVAGDIFALLHDKIFVAHNV 88
Query: 103 LRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR 141
FD + I+ A+ G + + L T R GR+
Sbjct: 89 -NFDYSFIQYHLAQAGY-------QLRTKKLCTVRLGRK 119
>gi|387814171|ref|YP_005429654.1| DNA polymerase III subunit epsilon [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339184|emb|CCG95231.1| DNA polymerase III epsilon subunit [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 236
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 10/164 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D ETT P + I+E G + V ++L NY + P + + ++ +GIT
Sbjct: 6 LDTETT-GIDPNEGHRIIEIGCVEVIERELTG-RNYHVYINPERE--VEAEAITVHGITN 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG--RPAPEPKGTIDS 130
+ + P FA++AD F+ + G HN FD + FA + R + G +DS
Sbjct: 62 EFLADKPKFAEVADEFFEFIKGAELVIHNAA-FDVGFMDSEFARLKPVRKTADHCGIVDS 120
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
LA+ ++ + ++ +L +G+ ++R L ++ E+L
Sbjct: 121 LAIARKKHPGQKNNLD--ALCKRYGV-DNSNRDLHGALLDAEIL 161
>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
anthracis str. CI]
gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
anthracis str. CI]
Length = 315
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G P P+ K ID++ L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLGLPEPQNK-VIDTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|421749854|ref|ZP_16187211.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
protein), partial [Cupriavidus necator HPC(L)]
gi|409771205|gb|EKN53581.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
protein), partial [Cupriavidus necator HPC(L)]
Length = 686
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 30/170 (17%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRC 67
I F D+ETT QR I E G + V P + E + TL+ P A P I R
Sbjct: 39 IVFVDLETTGTD--AQRDRITEIGVVEVGPDGVTE---WDTLLDPGCAIPPFIQ----RM 89
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT + V PTF +A+ + + L G+++ HN RFD ++++F G T
Sbjct: 90 TGITEEMVRGQPTFEALAEALAERLQGKLFVAHNA-RFDYGFLKQSFTRAG-------IT 141
Query: 128 IDSLALLTQRFGR-------RAGDMKMASLATYFGLGQQ-THRSLDDVRM 169
+ L T R R R G + +L FGL + HR+L D +
Sbjct: 142 FRADVLCTVRLSRALFPSVERHG---LDALIARFGLQPKGRHRALADAEL 188
>gi|374289372|ref|YP_005036457.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ]
gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ]
Length = 438
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVR 66
E FD+ETT + I+E G LV K E + + L++P PE I L+
Sbjct: 12 EFCVFDLETTGGNHKSDK--IIEIG--LVKIKNFEVIDQKNYLIQPEIKIPEFIQKLT-- 65
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
I + V SP D+ D + + I HN FD +G+P + K
Sbjct: 66 --SIKEEDVKDSPVIEDVIDEILKFMGDSILVAHNT-SFDVPFFNSVLKRLGKPQLKNKS 122
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+ L+T+ + + ++ FG+ ++ HR+LDD E+L
Sbjct: 123 LCTN--LMTKYLIPNLMNSNLNYMSKIFGIKHKKAHRALDDALATAELL 169
>gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803]
gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803]
Length = 507
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVR 66
+ A D+ETT G R I E I+V K+ + YS+LV P A P I +L+
Sbjct: 5 KFAITDIETTGNGIKGNR--ITEICVIVVQNGKV--IDEYSSLVNPSQAIPLYIETLT-- 58
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
GI + V ++P F++IAD + I I+ HN+ FD IR FA + R
Sbjct: 59 --GINDEMVFNAPQFSEIADEITKITKDCIFVAHNV-NFDYNIIRAEFASLDR 108
>gi|423550694|ref|ZP_17527021.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
ISP3191]
gi|401189078|gb|EJQ96138.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
ISP3191]
Length = 315
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G P P+ K ID++ L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLGLPEPQNK-VIDTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|148925831|ref|ZP_01809518.1| exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni CG8486]
gi|419648243|ref|ZP_14179589.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9217]
gi|145844817|gb|EDK21921.1| exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni CG8486]
gi|380626654|gb|EIB45102.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9217]
Length = 256
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGSVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|348171463|ref|ZP_08878357.1| hypothetical protein SspiN1_13234 [Saccharopolyspora spinosa NRRL
18395]
Length = 572
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query: 9 EIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
E+ F D+ETT R G A+ E GA+ V + E L ++TLV P D + S+ V
Sbjct: 22 EVTFVVVDLETTGGDRDGD--AVTEIGAVKV--RGGEVLGEFATLVNP-DRGIPPSI-VS 75
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
GIT VV +P F + + G + HN FD +R +G P+P+
Sbjct: 76 ITGITEAMVVDAPRFDAVLPAFLEFCRGSVLVAHNAP-FDIGFLRSNCERLGLRWPKPQ- 133
Query: 127 TIDSLALLTQRFGR-RAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
+D++ L + R + K+ +LA HR+LDD R ++VL
Sbjct: 134 VVDTVRLSRRVLTRDETPNHKLGTLARVLNARTVPVHRALDDARATVDVL 183
>gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames]
gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne]
gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
[Bacillus anthracis str. A2012]
gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0488]
gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0442]
gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0193]
gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0465]
gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0389]
gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0174]
gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. Tsiankovskii-I]
gi|229603113|ref|YP_002867802.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A0248]
gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
CNEVA-9066]
gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055]
gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western
North America USA6153]
gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger
B]
gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum]
gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
Australia 94]
gi|386737364|ref|YP_006210545.1| DNA polymerase III subunit alpha [Bacillus anthracis str. H9401]
gi|421637204|ref|ZP_16077802.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. BF1]
gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. Ames]
gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis
str. Sterne]
gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0488]
gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0193]
gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0442]
gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0389]
gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0465]
gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0174]
gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. Tsiankovskii-I]
gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0248]
gi|384387216|gb|AFH84877.1| DNA polymerase III alpha subunit [Bacillus anthracis str. H9401]
gi|403396000|gb|EJY93238.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. BF1]
Length = 315
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRIMSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|424848792|ref|ZP_18273268.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni D2600]
gi|356487948|gb|EHI17886.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni D2600]
Length = 256
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + P+ I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPKNIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ A + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDALAAAEIFKYC 227
>gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
Length = 246
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 20/177 (11%)
Query: 8 SEIAFFDVETTV------PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELIS 61
S I D ETT P G R I+E GA+ + +KL H + ++P I
Sbjct: 10 SRIVVLDTETTGMNLEGGPHYEGHR--IIEIGAVEIINRKLTGRH-FHVYLKP--DRAIQ 64
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
++ +GIT + +V P + D+ + D + G HN FD + F+++ P
Sbjct: 65 DEAIEVHGITDEFLVDKPEYKDVHEEFLDFIRGAELVAHNA-PFDVGFMDYEFSKLSIPT 123
Query: 122 P---EPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
E D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 124 AKTDELCKVTDTLAMAKKIFPGKRN---NLDVLCDRYGI-DNSHRTLHGALLDAEIL 176
>gi|386714550|ref|YP_006180873.1| bifunctional ATP-dependent DNA helicase DinG / DnaQ family
exonuclease [Halobacillus halophilus DSM 2266]
gi|384074106|emb|CCG45599.1| bifunctional ATP-dependent DNA helicase DinG / DnaQ family
exonuclease [Halobacillus halophilus DSM 2266]
Length = 930
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCN 68
A D+ETT + + I+E G I++ + + +S+L+ P P I+SL+
Sbjct: 5 AIVDLETTGNAKEDR---IIEIG-IVITKETGSVIKEFSSLIYPDRGIPPFITSLT---- 56
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-RPAPEPKGT 127
GI + V+ +P F++I D V+ ++ HNI FD + F G P P
Sbjct: 57 GIEEEDVLDAPFFSEIIDEVYHLIKDSYIVAHNI-EFDLGFLNGEFKRCGYEPLHNP--V 113
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLKYCATVLFLESS 186
ID++ L + + K+ LA G+G + HR+L D ++ ++L Y + S
Sbjct: 114 IDTVE-LARILIPTSPTFKLGQLADLLGMGHDRPHRALSDAQVTRDLLIYLLKRM---SR 169
Query: 187 LPD 189
LP+
Sbjct: 170 LPE 172
>gi|157165763|ref|YP_001466765.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826]
gi|112800127|gb|EAT97471.1| DNA polymerase III subunit epsilon [Campylobacter concisus 13826]
Length = 267
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 20/173 (11%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELISSLSVRC 67
E D+ETT T GQ I+E GAI + K E+ + + V + PE I+ L+
Sbjct: 75 EFCVVDIETTGGTTNGQ---IIEIGAIKM--KNGTEIGRFESFVAASVVPENITELT--- 126
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GI +V +P ++ + L ++ HN+ FD I + EIG G
Sbjct: 127 -GIRASDLVGAPNLLNVLERFKIFLGTSVFIAHNV-NFDYGFISHSLNEIGL------GI 178
Query: 128 IDSLALLTQRFGRR---AGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
+ + L T RR + + SL G+ HR+L+D E+ K C
Sbjct: 179 LLNRKLCTIDLSRRTIASQKYGLGSLKELLGINNTHHRALNDAIAAAEIFKVC 231
>gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
K96243]
gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344]
gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247]
gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98]
gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14]
gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91]
gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9]
gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
B7210]
gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894]
gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC
13177]
gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112]
gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
BCC215]
gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|386862256|ref|YP_006275205.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1026b]
gi|403518197|ref|YP_006652330.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
BPC006]
gi|418387758|ref|ZP_12967594.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 354a]
gi|418538822|ref|ZP_13104424.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1026a]
gi|418541386|ref|ZP_13106870.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1258a]
gi|418547630|ref|ZP_13112774.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1258b]
gi|418553789|ref|ZP_13118597.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 354e]
gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei
K96243]
gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
23344]
gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
10247]
gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|385347107|gb|EIF53777.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1026a]
gi|385358228|gb|EIF64248.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1258a]
gi|385360443|gb|EIF66375.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1258b]
gi|385371189|gb|EIF76392.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 354e]
gi|385376063|gb|EIF80781.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 354a]
gi|385659384|gb|AFI66807.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1026b]
gi|403073840|gb|AFR15420.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
BPC006]
Length = 240
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L + LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARAGDR--IIEIGCVELLNRRLTGKNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA--PEPKG 126
G+T + + P FA+I D + D + HN FD + FA +G P+ G
Sbjct: 58 GLTTEFLSDKPKFAEIVDPLRDFVRDAELIIHNA-PFDLGFLDAEFALLGLPSFTDHCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+L Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 335
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 47 NYSTLVRPA-DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRF 105
+ TLV P DP V +G+T + + +P F DIA + L GR+ HN F
Sbjct: 59 RWYTLVNPQRDPG-----PVWIHGLTRETLSDAPLFPDIATAFAERLDGRVLVAHNAA-F 112
Query: 106 DCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSL 164
D + I FA AP + + ++A L++ G + K+ +LA ++G+ Q+ H +L
Sbjct: 113 DWSMIAREFARSKTEAPV-RQRLCTIA-LSKELGLPLANHKLETLAAHYGVVQERAHHAL 170
Query: 165 DDVRMNLEVLK 175
DD R+ E +
Sbjct: 171 DDARVLAETFR 181
>gi|424842457|ref|ZP_18267082.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
gi|395320655|gb|EJF53576.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
Length = 248
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
MG +R + FFD+ETT + R I++ GAI + P E+ N LV P P I
Sbjct: 1 MGLQLERP-LVFFDLETTGTSIVNDR--IVQIGAIKLFPDGRTEVKN--RLVNPQMP--I 53
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
+ +GI VV++P F +A + L AG+N FD + E FA G
Sbjct: 54 PEGASAVHGIYDKDVVNAPKFRQLAKAFYGWLKDSDLAGYNSDNFDIPMLAEEFARAGME 113
Query: 121 APEP 124
P P
Sbjct: 114 YPTP 117
>gi|227813558|ref|YP_002813567.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. CDC
684]
gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. CDC 684]
Length = 315
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRIMSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|423418508|ref|ZP_17395597.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-1]
gi|401105114|gb|EJQ13081.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-1]
Length = 315
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PNRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQNCAAI 171
>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
Rt17-B1]
Length = 1390
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 29 ILEFGAILVCPKK-LEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
I+E GA+ K ++E H T VRP ++ S+ GIT D + +P +
Sbjct: 400 IMEIGAVKTRDGKVIDEFH---TFVRPNK---LNKKSLNITGITEDMLKDAPDIMQVLPK 453
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKM 147
+ + + I HN FD ++ ++ G P ID+L L + +
Sbjct: 454 LLEFIKDSILVAHNA-DFDMTFLKNILSKSGIEFNPP--YIDTLRLSQALLRNKIKSFSL 510
Query: 148 ASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
L +FGLG Q HR+LDD R+ + V
Sbjct: 511 DKLVDHFGLGAFQHHRALDDARVTVNVF 538
>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
Length = 345
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + I+ G + E H Y TLV P DP V +G
Sbjct: 41 AVVDVETTGLARDDR---IVSAGVYQLDALGRVEDHWY-TLVNPERDPG-----PVWIHG 91
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + +P F DI+D + L R+ HN FD + + +A R AP + +
Sbjct: 92 LTTGVLKDAPLFKDISDELSARLADRVLVAHNAA-FDWSMLAREYARAERVAPV-RQRLC 149
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK---YCATVLFLES 185
++A L++ G + K+ SLA +FG+ Q+ H +LDD R+ E + A +
Sbjct: 150 TIA-LSKELGLPLPNHKLESLAAHFGVVQERAHHALDDARVLAEAFRPSLVAAAGGGVRL 208
Query: 186 SLPDIFTVNSWVSPNATTR 204
L + + W P AT R
Sbjct: 209 PLLECRPLTEWSEPPATPR 227
>gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827]
gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827]
Length = 578
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGIT 71
FD+ETT P I E GA+ V ++ + + TLV DPE I V GIT
Sbjct: 34 FDLETTGPR--AAEDGITEIGAVKVRGGRV--IGEFGTLV---DPERGIPPQIVALTGIT 86
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
+ V +P A + + G + HN FD ++ A G P+P + ++
Sbjct: 87 QNMVTGAPVLASVLPAFLEFAEGAVLVAHNS-GFDVGFMKAACERHGYAWPKPP-VVCTV 144
Query: 132 ALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L + R A K+++L+ FG+ + HR+L D R +EVL
Sbjct: 145 KLARRVLSREEAPSCKLSALSALFGVPEAPNHRALVDARATVEVL 189
>gi|386000501|ref|YP_005918800.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CTRI-2]
gi|344221548|gb|AEN02179.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CTRI-2]
Length = 329
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDGQPQFADIAGEVADVLRGRTLVAHNVA-FDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DDVR+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|330815857|ref|YP_004359562.1| exonuclease [Burkholderia gladioli BSR3]
gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
catalytic domain protein [Burkholderia gladioli BSR3]
Length = 388
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AF D+ETT + R I E G + V P+ + +++L+ P P I + + G
Sbjct: 15 LAFVDLETTGGSAADHR--ITEIGVVEVGPQGVS---TWTSLIDPQQP--IPAFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
I+ + V +PTF+ IA +F L GR++ HN FD +R F G
Sbjct: 68 ISDEMVRGAPTFSSIAAELFARLEGRLFIAHNA-SFDRGFLRAEFERAG 115
>gi|423390188|ref|ZP_17367414.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-3]
gi|401640566|gb|EJS58297.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-3]
Length = 315
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PNRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQNCAAI 171
>gi|390944546|ref|YP_006408307.1| DNA polymerase III subunit epsilon family exonuclease [Belliella
baltica DSM 15883]
gi|390417974|gb|AFL85552.1| exonuclease, DNA polymerase III, epsilon subunit family [Belliella
baltica DSM 15883]
Length = 460
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLS 64
+ E A D+ETT I E ++ K+ + +Y TL+ P P I+ L+
Sbjct: 2 KQEFAIVDIETTGGNPGDGG-GITEVAIVIHDGNKI--IDSYQTLINPERFIPGFITGLT 58
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAF--AEIGRPAP 122
GI + V +PTF ++A+ +F IL R++ HN+ FD I++A A I AP
Sbjct: 59 ----GIDSNMVADAPTFFEVAEEIFRILENRVFIAHNV-NFDYTFIQKALEKANINYKAP 113
Query: 123 E 123
+
Sbjct: 114 K 114
>gi|419629598|ref|ZP_14162318.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 60004]
gi|419639240|ref|ZP_14171275.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 86605]
gi|419657980|ref|ZP_14188619.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-1]
gi|380607517|gb|EIB27374.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 60004]
gi|380616926|gb|EIB36113.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 86605]
gi|380633897|gb|EIB51816.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-1]
Length = 253
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + P+ I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPKNIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ A + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDALAAAEIFKYC 227
>gi|384187620|ref|YP_005573516.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675939|ref|YP_006928310.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|452199996|ref|YP_007480077.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409175068|gb|AFV19373.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|452105389|gb|AGG02329.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 315
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G P P K ID++ L +++ + A + K+ +L G+ +H +LDD
Sbjct: 106 NVNMLGLPEPTNK-VIDTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|393724973|ref|ZP_10344900.1| DNA polymerase III subunit epsilon [Sphingomonas sp. PAMC 26605]
Length = 287
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 44 ELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNIL 103
E+ Y TL+ P D + + + +GI VV P F D+ V L GR H+
Sbjct: 45 EIFEYETLLDPCDE--FHAFNTQIHGIAAHHVVGQPRFGDVHAIVDRYLAGRTTVAHSF- 101
Query: 104 RFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAG----DMKMASLATYFGLGQQ 159
FD + + A + RP I+++ L + R +RA + K+ LA Y G+ +
Sbjct: 102 -FDKSALAAACRQHDRP------LIETMWLDSVRVAKRAWPDLENHKLGGLARYLGIAHR 154
Query: 160 THRSLDDVR 168
H +L D R
Sbjct: 155 HHDALSDAR 163
>gi|386819688|ref|ZP_10106904.1| exonuclease, DNA polymerase III, epsilon subunit family [Joostella
marina DSM 19592]
gi|386424794|gb|EIJ38624.1| exonuclease, DNA polymerase III, epsilon subunit family [Joostella
marina DSM 19592]
Length = 461
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVETT + G + + A+ + ++E H +LV P LISS + GI
Sbjct: 4 AIIDVETTGLSGSGNKITEIAI-AVFDGERVVDEFH---SLVNPQ--ALISSHVIGLTGI 57
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
V ++PTF++IA V +++ HN+ FD IR F E+G
Sbjct: 58 DNAMVANAPTFSEIAPEVLSYTEDKVFVAHNV-NFDYNVIRNEFKELG 104
>gi|339998273|ref|YP_004729156.1| DNA polymerase III subunit epsilon [Salmonella bongori NCTC 12419]
gi|339511634|emb|CCC29343.1| DNA polymerase III epsilon subunit [Salmonella bongori NCTC 12419]
Length = 243
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + FA + R P+
Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFALLKRDIPKTSTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|384181423|ref|YP_005567185.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 315
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G P P+ K ID++ L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LGLPEPQNK-VIDTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA++
Sbjct: 168 CASI 171
>gi|407941896|ref|YP_006857536.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni PT14]
gi|419640661|ref|ZP_14172585.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23357]
gi|419661527|ref|ZP_14191851.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-831]
gi|419677175|ref|ZP_14206332.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 87330]
gi|380619144|gb|EIB38236.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23357]
gi|380639870|gb|EIB57339.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-831]
gi|380654989|gb|EIB71324.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 87330]
gi|407905734|gb|AFU42563.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni PT14]
Length = 251
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + + +E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKI--QNYKEIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|347542459|ref|YP_004857096.1| DNA polymerase III PolC [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985495|dbj|BAK81170.1| DNA polymerase III PolC [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 1398
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 15/172 (8%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGI 70
FD+ETT + ++ I+E GA+ + K E + +ST V P P I+ L+ I
Sbjct: 385 FDIETTGFSNVSEK--IIEIGAVKI--KNGEIIDEFSTFVNPEKVIPFNITELT----SI 436
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP-KGTID 129
+ + V S+P DI +D G + HNI FD + IR + G TID
Sbjct: 437 SNEMVASAPVIEDIIGKFYDFCSGAVLVAHNI-DFDMSFIRRNGDKFGYSFKNSLLDTID 495
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
LL R ++ LA HR++DD R +L C +L
Sbjct: 496 ICKLLFPELKRYRLNVVAKHLAIPL---DNHHRAVDDARATAIILIKCFEIL 544
>gi|229820392|ref|YP_002881918.1| hypothetical protein Bcav_1900 [Beutenbergia cavernae DSM 12333]
gi|229566305|gb|ACQ80156.1| DNA polymerase III, epsilon subunit [Beutenbergia cavernae DSM
12333]
Length = 590
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 8 SEIAFF--DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSL 63
+E+AF D+ETT + AI E GA+ V +E TLV P P I+ L
Sbjct: 28 AEVAFVVVDLETTGGSPNAD--AITEIGAVRVRGGVVE--GELGTLVDPGRSIPPTITVL 83
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+ GIT V+ +P ++ + + HG + HN RFD +R A +G P+
Sbjct: 84 T----GITNAMVIGAPPIEEVLPSFLEFAHGAVLVAHNA-RFDTGFLRVAAERMGLTWPK 138
Query: 124 PKGTIDSLALLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
P +D++ L + R A + ++ SLA F HR+L D R ++VL
Sbjct: 139 PL-VVDTVQLARRVVSRDEAPNHRLGSLARLFHASVTPDHRALTDARATVDVL 190
>gi|358447693|ref|ZP_09158209.1| DNA polymerase III subunit epsilon [Marinobacter manganoxydans
MnI7-9]
gi|357228046|gb|EHJ06495.1| DNA polymerase III subunit epsilon [Marinobacter manganoxydans
MnI7-9]
Length = 486
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 11/169 (6%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
AF D+ETT R I E G + + E + + TL+ P IS G
Sbjct: 13 FAFLDIETTGGNSARDR--ITEIG--IRFWRAGEVVGEWQTLLNPETR--ISPFIENFTG 66
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
I+ + V +P FAD+AD + + L +++ HN RFD I+ F + R +
Sbjct: 67 ISNEMVADAPLFADVADELEEQLKDKVFVAHNA-RFDYGFIKSEFRRLERLF---SAKVL 122
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLKYC 177
A L++R M +L GL Q Q HR++ DV L ++
Sbjct: 123 CTAKLSRRLYPEFRRHNMDALIARHGLAQVQRHRAMGDVSAMLSFFEHA 171
>gi|417700240|ref|ZP_12349387.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218]
gi|333008996|gb|EGK28455.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218]
Length = 243
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN + FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAV-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|419653276|ref|ZP_14184254.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-872]
gi|419665430|ref|ZP_14195499.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-7]
gi|419681259|ref|ZP_14210102.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 140-16]
gi|419686980|ref|ZP_14215397.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1798]
gi|380632797|gb|EIB50847.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-872]
gi|380643534|gb|EIB60757.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-7]
gi|380658649|gb|EIB74654.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 140-16]
gi|380663236|gb|EIB78890.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1798]
Length = 253
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + P+ I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPKNIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ A + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDALAAAEIFKYC 227
>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
Length = 395
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT + R I E G + V P + +S+LV P P I S + G
Sbjct: 27 IVFVDLETTGGSTAEHR--ITEVGVVEVGPAGVS---RWSSLVDPQQP--IPSFIQQLTG 79
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTF IA +F+ L+G+++ HN FD +R F G
Sbjct: 80 ITNAMVRGAPTFEAIAPALFERLNGKLFVAHNA-SFDRGFLRGEFRRAG 127
>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 315
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G P P+ K ID++ L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLGLPEPQNK-VIDTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA++
Sbjct: 164 VYQKCASI 171
>gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
Length = 315
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G P P+ K ID++ L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LGLPEPQNK-VIDTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA++
Sbjct: 168 CASI 171
>gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii
PYR-1]
gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii
PYR-1]
Length = 333
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVET+ RPGQ I+ A+ + E YS L DP +G+
Sbjct: 21 AVVDVETS-GFRPGQA-RIVSVAALALSDDGNVEKSLYSLLDPGVDPG-----PTHVHGL 73
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNI---LRFDCARIREAFAEIGRPAPEPKGT 127
T + + P F D+ + ++L GR HN+ F A AE+ P T
Sbjct: 74 TAEMLAGQPAFGDVVGDLIEVLRGRTLVAHNVGFDYSFLTAEAEMVHAEL------PVDT 127
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
+ L +R ++++ +LA ++G+ Q + H +LDD + ++LK
Sbjct: 128 VMCTVELARRLDLGLDNLRLETLAAHWGVTQMKPHDALDDAMVLAQILK 176
>gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
MC0-3]
Length = 244
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--LIEIGCVELLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++A + D + HN FD + FA +G P G
Sbjct: 58 GLTTEFLSDKPKFAEVAHQILDFVKDAELIIHNA-PFDLGFLDAEFARLGLPPFTEHCGG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|449143588|ref|ZP_21774411.1| DNA polymerase III subunit epsilon [Vibrio mimicus CAIM 602]
gi|449080586|gb|EMB51497.1| DNA polymerase III subunit epsilon [Vibrio mimicus CAIM 602]
Length = 247
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 10 IAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
I D ETT R G + I+E GA+ + +KL H + ++P D E I ++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRH-FHVYLKP-DRE-IQLEAI 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+GIT + + P + D+ D D + G HN FD + FA++G +
Sbjct: 69 EVHGITDEFLRDKPEYKDVHDEFLDFIKGAELVAHNA-PFDVGFMDYEFAKLGGSVVKTT 127
Query: 126 G---TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRN---NLDILCERYGI-DNSHRTLHGALLDAEIL 176
>gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
17836]
gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
17836]
Length = 415
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA---DPELISSLSVRC 67
A D ETT PG R ++E +L+ E H + TL+ P P+ I
Sbjct: 3 AVIDTETT-GLLPGHRHRVIEIAVVLLDQHGRFE-HEWVTLLNPQRDLGPQHI------- 53
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
+GI V+++P F D+A + +L GR+ GHN+ FD +R FA +G P
Sbjct: 54 HGILTADVLAAPEFVDVARHLGALLAGRMVVGHNV-EFDLGFLRAEFARLGHVVP 107
>gi|390934922|ref|YP_006392427.1| DNA polymerase III polC-type [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570423|gb|AFK86828.1| DNA polymerase III polC-type [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 1410
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 11/163 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT + I+E GA+ + K + + + T V P IS + GIT
Sbjct: 402 FDIETTGLSSINDN--IIEIGAVKI--KNCQIVDTFETFVNPQ--VHISKFITKLTGITD 455
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V P+ +I D + I HN FD I+ +G P +D+L
Sbjct: 456 DMVKEYPSIEEILPKFLDFIKDSILVAHNA-NFDVTFIKTKARNLGMEVDNP--VLDTLE 512
Query: 133 LLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
L++ + K+ ++A + G+ + HR++DD + E+
Sbjct: 513 -LSRHMYENLKNYKLDTVAQHLGVSLENHHRAVDDAKATAEIF 554
>gi|381164959|ref|ZP_09874189.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora azurea NA-128]
gi|379256864|gb|EHY90790.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora azurea NA-128]
Length = 566
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGIT 71
D+ETT G I E GA+ V + E L ++TLV P P I V GIT
Sbjct: 19 IVDLETTGGAPDGGN--ITEIGAVKV--RGGEVLGEFATLVDPGQP--IPPQIVALTGIT 72
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V S+P + G + HN FD + ++ A G P P +
Sbjct: 73 TAMVRSAPRIEHVLPAFLAFAEGAVLVAHNA-GFDTSFLKAACRAHGYAWPTP------V 125
Query: 132 ALLTQRFGRRA--GDMK---MASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T + RR G+++ +++LA FG THR+LDD R ++VL
Sbjct: 126 VLCTLKLARRVLRGEVRSHRLSTLAALFGASTTPTHRALDDARATVDVL 174
>gi|291287762|ref|YP_003504578.1| DNA polymerase III subunit epsilon [Denitrovibrio acetiphilus DSM
12809]
gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
12809]
Length = 205
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHN-YSTLVRPADPELISSLS 64
D+ FD ETT P + +LE GA+ V P + +L + + TL+ P P ++ S
Sbjct: 7 DQLTFTVFDTETT-GMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPKAPIPYNAYS 65
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
V +GI+ V P D+ F I A HN RFDC+ + AE P
Sbjct: 66 V--HGISTAMVADKPEIKDVLPGFFSFTENTIIAAHNA-RFDCSFVSHHSAECCIVNPMT 122
Query: 125 KGTIDSLALL-TQRFGRRAGDMKMASLATYFGL-----GQQTHRSLDDVRMNLEVLKYC 177
K +D++ L + G ++ + +L YF + HR+L D +L C
Sbjct: 123 K-IVDTVKLAKSAHSGLKS--YSLGNLIHYFSMDIPLPDTYRHRALYDAAHTALLLTIC 178
>gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1710b]
gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1]
gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229]
gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668]
gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1106a]
gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237811761|ref|YP_002896212.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
MSHR346]
gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
4]
gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1106b]
gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
10399]
gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1655]
gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1710a]
gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
406e]
gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
2002721280]
gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1710b]
gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1]
gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
10229]
gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668]
gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1106a]
gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
2002721280]
gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
406e]
gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
10399]
gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1655]
gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
MSHR346]
gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
4]
gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1106b]
gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1710a]
Length = 253
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 20/187 (10%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNG 69
D ETT + R G R I+E G + + ++L + LH Y R +DP +L+V +G
Sbjct: 19 LDTETTGLNARAGDR--IIEIGCVELLNRRLTGKNLHFYVNPERDSDP---GALAV--HG 71
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA--PEPKGT 127
+T + + P FA+I D + D + HN FD + FA +G P+ G
Sbjct: 72 LTTEFLSDKPKFAEIVDPLRDFVRDAELIIHNA-PFDLGFLDAEFALLGLPSFTDHCAGV 130
Query: 128 IDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFLE 184
ID+L Q F G+R + +L FG+ HR+L ++ E+L Y A E
Sbjct: 131 IDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQE 186
Query: 185 SSLPDIF 191
S + D+
Sbjct: 187 SLVIDML 193
>gi|375011664|ref|YP_004988652.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Owenweeksia hongkongensis DSM 17368]
gi|359347588|gb|AEV32007.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Owenweeksia hongkongensis DSM 17368]
Length = 255
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I FFD+ETT R I+E G + + P +E + LV P P I + + +G
Sbjct: 9 ICFFDLETTGVNVVTDR--IVEVGVLKIFPNGNKESKTW--LVNPERP--IPAETSAIHG 62
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT + V + PTF ++A V D++ G+N +FD I E F G
Sbjct: 63 ITDEKVANEPTFKELAHRVHDMIKDSDLGGYNSNKFDIPMIAEEFLRAG 111
>gi|378718306|ref|YP_005283195.1| DNA polymerase III subunit epsilon [Gordonia polyisoprenivorans
VH2]
gi|375753009|gb|AFA73829.1| DNA polymerase III epsilon subunit [Gordonia polyisoprenivorans
VH2]
Length = 622
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 8 SEIAFFDVETTV--PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSL 63
+ I D+ETT P R AI E GA+ V + E L ++TLV P + P I +L
Sbjct: 43 TTIVVVDLETTGGDPARD----AITEIGAVKV--RGGEVLGEFATLVDPQRSIPPQIVAL 96
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+ GIT V +P ++ + + G + HN RFD +R A + P
Sbjct: 97 T----GITSAMVYDAPQIGEVLSSFVEFARGCLLVAHNA-RFDMGFLRHNAARLDLAWPF 151
Query: 124 PKGTIDSLALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+L T R RR A +++ +LA F + + THR+LDD R +EVL
Sbjct: 152 ------HTSLCTVRLARRVLTRDEAPTVRLGALADLFDVSVRPTHRALDDARATVEVL 203
>gi|343083046|ref|YP_004772341.1| exonuclease RNase T and DNA polymerase III [Cyclobacterium marinum
DSM 745]
gi|342351580|gb|AEL24110.1| Exonuclease RNase T and DNA polymerase III [Cyclobacterium marinum
DSM 745]
Length = 267
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
++ IAFFD+E T R I+E + + P +EL + P P I + +
Sbjct: 6 KTPIAFFDLEATGINISTDR--IVEISILKIFPDSSQELKTLK--INPTVPIPIETSLI- 60
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
+GI V +PTF D+A +F G AG N+L++D + E F +G
Sbjct: 61 -HGIYDKDVEDAPTFKDVAKELFRFFEGADLAGFNVLKYDIPLLVEEFLRVG 111
>gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
Length = 1208
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
I FD+ETT G R I+EF A + + S LV P P LI++++
Sbjct: 177 IIVFDLETTGFRAAGDR--IIEFAARDLAGG---DRSTISALVNPGRTVPYLITAVT--- 228
Query: 68 NGITPDAVVS--SPTFADIADTVFDILHGR-------IWAGHNILRFDCARIREAFAEIG 118
GIT V P++ ++ ++ + R I HN RFD + + F G
Sbjct: 229 -GITNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCG 287
Query: 119 RPAPEPKGTIDSLAL---LTQRFGRRAGDMKMASLATYFGL--GQQTHRSLDDVRMNLEV 173
PE +DS+ L ++FG +K++ L +GL ++ HR++ DV M V
Sbjct: 288 IQVPEWWLFLDSMPLAREAKKKFGYNWRSLKLSVLHEAYGLHSTERAHRAMADVNMLASV 347
Query: 174 LKYCATVLFLESS--LPDIFTVN 194
L+ + L L +S L FT +
Sbjct: 348 LEAIVSELQLPASVFLEKAFTAD 370
>gi|404316698|ref|ZP_10964631.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi CTS-325]
Length = 231
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPK--KLEELHNY-STLVRPADPELISSLSVRCNG 69
FD ETT R R ++E G + + K H Y + R PE ++ +G
Sbjct: 6 FDTETTGLERLEDR--VIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALA-----VHG 58
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
I+ + ++ PTFA++ D + G HN + FD I A +G+ + + ID
Sbjct: 59 ISNEQLLDKPTFAEVLDEFLEFFDGAKLVAHNAM-FDLGFINAELARLGQAEIQSERIID 117
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+LAL ++ G + +L +G+ + HR+L ++ E+L
Sbjct: 118 TLALARRK--HPMGPNSLDALCKRYGI-ENGHRTLHGALLDSEIL 159
>gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU
1054]
gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia
HI2424]
gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
1054]
gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
HI2424]
Length = 244
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--LIEIGCVELLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++A + D + HN FD + FA +G P G
Sbjct: 58 GLTTEFLSDKPKFAEVAHQILDFVKDAELIIHNA-PFDLGFLDAEFARLGLPPFTEHCGG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|392545120|ref|ZP_10292257.1| DNA polymerase III subunit epsilon [Pseudoalteromonas rubra ATCC
29570]
Length = 726
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
DVETT + R I E + V ++ + + +LV P P+ I+ L+ GI+
Sbjct: 560 DVETTGGKKEFDR--ITEIAMVKVVDGQV--VDQWQSLVNPTRRIPKYITELT----GIS 611
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+ V ++P F+D+A V+D + I+ HN+ FD I+ FA + + +PK
Sbjct: 612 NEMVANAPYFSDLAKQVYDFMQDAIFVAHNV-NFDMGFIKAEFARLEQSFQKPK 664
>gi|365853570|ref|ZP_09393837.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
parafarraginis F0439]
gi|363712195|gb|EHL95894.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
parafarraginis F0439]
Length = 943
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLS 64
++ A D+ETT T I++F +V ++ ++ Y T V P P+ I
Sbjct: 4 KTTFAVVDIETT-GTDMADNNRIIQFSCAIVADNRV--VNTYVTDVNPQREVPKRI---- 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
++ GITP + +PTF I+ ++ +L G ++ HN+ FD + + F +G P
Sbjct: 57 IQLTGITPQRLKKAPTFDQISAKLYQLLSGTVFVAHNV-NFDFPFLNQEFQRVGY----P 111
Query: 125 KGTIDSL--ALLTQRFGRRAGDMKMASLATYFGL 156
+ +ID++ L+Q ++ L+ YF +
Sbjct: 112 ELSIDAIDTVTLSQILLPTLASYRLQDLSAYFNI 145
>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
Length = 224
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP---ADPELIS 61
Q E FD+ETT + R I+E GAI V K + +STL P P IS
Sbjct: 36 QSIQEYVVFDLETTGFNKKEDR--IIEIGAIKV--KNGRVVDRFSTLCAPIKGGKPMYIS 91
Query: 62 SLSVRCNGI-TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
+ GI D + P + + + + +I HN L+FD ++EA R
Sbjct: 92 AKITEVTGIKNVDLLNQIPESEAVKNFMCWLGESKISVAHNGLKFDIPFLKEA---CKRS 148
Query: 121 APEPKGT--IDSLALLTQRFGRRAGDM---KMASLATYFGLGQQTHRSLDDVRMNLEVL 174
E K T +D++ L G++ K +LA YFG+ Q HR+++D L++
Sbjct: 149 NVEFKFTHILDTMLLSKALNYVNNGNIPNNKQETLARYFGVDYQAHRAVNDCEALLKIF 207
>gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
Length = 1254
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
I FD+ETT G R I+EF A + + S LV P P LI++++
Sbjct: 177 IIVFDLETTGFRAAGDR--IIEFAARDLAGG---DRSTISALVNPGRTVPYLITAVT--- 228
Query: 68 NGITPDAVVS--SPTFADIADTVFDILHGR-------IWAGHNILRFDCARIREAFAEIG 118
GIT V P++ ++ ++ + R I HN RFD + + F G
Sbjct: 229 -GITNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCG 287
Query: 119 RPAPEPKGTIDSLAL---LTQRFGRRAGDMKMASLATYFGLG--QQTHRSLDDVRMNLEV 173
PE +DS+ L ++FG +K++ L +GL ++ HR++ DV M V
Sbjct: 288 IQVPEWWLFLDSMPLARETKKKFGYNWRSLKLSVLHEAYGLHSTERAHRAMADVNMLASV 347
Query: 174 LKYCATVLFLESS--LPDIFTVN 194
L+ + L L +S L FT +
Sbjct: 348 LEAIVSELQLPASEFLEKAFTAD 370
>gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315]
gi|421868919|ref|ZP_16300563.1| DNA polymerase III epsilon subunit [Burkholderia cenocepacia H111]
gi|444364452|ref|ZP_21164777.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia BC7]
gi|444369437|ref|ZP_21169189.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
K56-2Valvano]
gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315]
gi|358071055|emb|CCE51441.1| DNA polymerase III epsilon subunit [Burkholderia cenocepacia H111]
gi|443593085|gb|ELT61847.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia BC7]
gi|443599083|gb|ELT67391.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
K56-2Valvano]
Length = 244
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--LIEIGCVELLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++A + D + HN FD + FA +G P G
Sbjct: 58 GLTTEFLSDKPKFAEVAHQILDFVKDAELIIHNA-PFDLGFLDAEFARLGLPPFTEHCGG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
gi|424807447|ref|ZP_18232855.1| DNA polymerase III, epsilon subunit [Vibrio mimicus SX-4]
gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
gi|342325389|gb|EGU21169.1| DNA polymerase III, epsilon subunit [Vibrio mimicus SX-4]
Length = 247
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 10 IAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
I D ETT R G + I+E GA+ + +KL H + ++P D E I ++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRH-FHVYLKP-DRE-IQLEAI 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+GIT + + P + D+ D D + G HN FD + FA++G +
Sbjct: 69 EVHGITDEFLRDKPEYKDVHDEFLDFIKGAELVAHNA-PFDVGFMDYEFAKLGGSVVKTT 127
Query: 126 ---GTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRN---NLDILCERYGI-DNSHRTLHGALLDAEIL 176
>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 324
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 61 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 114
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G P P K ID++ L +++ + A + K+ +L G+ +H +LDD
Sbjct: 115 NVNMLGLPEPTNK-VIDTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAA 172
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 173 VYQKCAAI 180
>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
43247]
Length = 595
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 22/177 (12%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVR 66
+ + D+ETT G R I E GA+ + + E L ++TLV DPE I V
Sbjct: 36 TTLVVVDLETTGSDPAGDR--ITEIGAVKI--RGGEVLGEFATLV---DPERSIPPQIVT 88
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
GIT V ++P ++ + G I HN RFD +R + P P
Sbjct: 89 LTGITHAMVSAAPRIEEVLPAFIEFARGSILVAHNA-RFDMGFLRRNAQRLHLDFPFP-- 145
Query: 127 TIDSLALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKY 176
L+L T RR A +++++LA F + + THR+LDD R +EV +
Sbjct: 146 ----LSLCTVTMARRILHREEAPTVRLSALADLFDVSVRPTHRALDDARATVEVFHH 198
>gi|402782290|ref|YP_006637836.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|402543152|gb|AFQ67301.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae 1084]
Length = 243
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+++ R + +
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNA-SFDIGFMDYEFSKLNRGIGKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|359767262|ref|ZP_09271053.1| DNA polymerase III epsilon subunit [Gordonia polyisoprenivorans
NBRC 16320]
gi|359315377|dbj|GAB23886.1| DNA polymerase III epsilon subunit [Gordonia polyisoprenivorans
NBRC 16320]
Length = 609
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 8 SEIAFFDVETTV--PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSL 63
+ I D+ETT P R AI E GA+ V + E L ++TLV P + P I +L
Sbjct: 32 TTIVVVDLETTGGDPARD----AITEIGAVKV--RGGEVLGEFATLVDPQRSIPPQIVAL 85
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+ GIT V +P ++ + + G + HN RFD +R A + P
Sbjct: 86 T----GITSAMVYDAPQIGEVLSSFVEFARGCLLVAHNA-RFDMGFLRHNAARLDLAWPF 140
Query: 124 PKGTIDSLALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+L T R RR A +++ +LA F + + THR+LDD R +EVL
Sbjct: 141 ------HTSLCTVRLARRVLTRDEAPTVRLGALADLFDVSVRPTHRALDDARATVEVL 192
>gi|419649464|ref|ZP_14180703.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-1025]
gi|380630272|gb|EIB48514.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-1025]
Length = 251
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + + +E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKI--QNYKEIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|431927204|ref|YP_007240238.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri RCH2]
gi|431825491|gb|AGA86608.1| DNA polymerase III, epsilon subunit [Pseudomonas stutzeri RCH2]
Length = 241
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGIT 71
D ETT +P G R I+E G + V ++L H Y ++P D E + ++ +GIT
Sbjct: 6 LDTETTGMPVADGHR--IIEIGCVEVIGRRLTGRH-YHVYLQP-DRE-VDEGAIAVHGIT 60
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA----PEPKGT 127
+ +V P F D+AD F+ + G HN FD I FA +G+ E
Sbjct: 61 NEFLVDKPRFRDVADEFFEFIKGAQLVIHNAA-FDLGFINNEFALLGQQERADIAEHCSV 119
Query: 128 IDSLALLTQRF-GRRAGDMKMASLATYFGL---GQQTHRSLDDVRMNLEV 173
+D+L + +R G+R + +L +G+ G+ H +L D + +V
Sbjct: 120 LDTLLMARERHPGQRN---SLDALCKRYGVDNSGRDLHGALLDAEILADV 166
>gi|419651297|ref|ZP_14182397.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-894]
gi|380631427|gb|EIB49621.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-894]
Length = 253
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TEIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 246
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+++ R + +
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNA-SFDIGFMDYEFSKLNRGIGKTETF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKITDSLALARKMFPGKR 145
>gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
49188]
gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC
49188]
Length = 231
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPK--KLEELHNY-STLVRPADPELISSLSVRCNG 69
FD ETT R R ++E G + + K H Y + R PE ++ +G
Sbjct: 6 FDTETTGLERLEDR--VIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALA-----VHG 58
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
I+ + ++ PTFA++ D + G HN + FD I A +G+ + + ID
Sbjct: 59 ISNEQLLDKPTFAEVLDEFLEFFDGAKLVAHNAM-FDLGFINAELARLGQAEIQSERIID 117
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+LAL ++ G + +L +G+ + HR+L ++ E+L
Sbjct: 118 TLALARRK--HPMGPNSLDALCKRYGI-ENGHRTLHGALLDSEIL 159
>gi|423401633|ref|ZP_17378806.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-2]
gi|423477729|ref|ZP_17454444.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6X1-1]
gi|401653011|gb|EJS70562.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-2]
gi|402429364|gb|EJV61450.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6X1-1]
Length = 315
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G P P+ K ID++ L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LGLPEPQNK-VIDTV-FLAKKYMKYAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA++
Sbjct: 168 CASI 171
>gi|419627765|ref|ZP_14160658.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23263]
gi|380606222|gb|EIB26143.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23263]
Length = 253
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|358445226|ref|ZP_09155836.1| putative DNA polymerase III subunit epsilon [Corynebacterium casei
UCMA 3821]
gi|356608672|emb|CCE54079.1| putative DNA polymerase III subunit epsilon [Corynebacterium casei
UCMA 3821]
Length = 483
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 13/186 (6%)
Query: 15 VETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSLSVRCNGITPD 73
V V T G +I + GA+ EE + L +P A E +++ +GIT D
Sbjct: 120 VAVDVETANGNWGSICQIGAVRFVAG--EETESKVWLCKPPAGIEHFDDINISIHGITAD 177
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V + TFA+ A + + + HN +FD +R AF P PE K SLAL
Sbjct: 178 DVKDAQTFAEAASELLTFMRDDVLVAHNA-QFDSTALRSAFLRSQMPVPEMKLAC-SLAL 235
Query: 134 LTQRFGRR---AGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLKYCATV----LFLES 185
+ + K+ ++A G+ + H +LDD R ++ A + E
Sbjct: 236 ARHASKSKVLAVANHKLPTVAKAVSFGEFKHHDALDDARAAGHIISALAPAFDSPVEGEQ 295
Query: 186 SLPDIF 191
S+ D+F
Sbjct: 296 SIRDVF 301
>gi|423118797|ref|ZP_17106481.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5246]
gi|376400541|gb|EHT13153.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5246]
Length = 246
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+AD D + G HN FD + F+++ R +
Sbjct: 69 HGIADEFLMDKPVFADVADEFIDYIRGAELVIHNA-SFDIGFMDYEFSKLNRGIAKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
Length = 315
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PNRITSLT----GITNYRVSDAPTIEEVLPFFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQNCAAI 171
>gi|402556268|ref|YP_006597539.1| DNA polymerase III subunit epsilon [Bacillus cereus FRI-35]
gi|401797478|gb|AFQ11337.1| DNA polymerase III subunit epsilon [Bacillus cereus FRI-35]
Length = 315
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA +
Sbjct: 168 CAFI 171
>gi|397687147|ref|YP_006524466.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 10701]
gi|395808703|gb|AFN78108.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 10701]
Length = 250
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 18/171 (10%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGIT 71
D ETT +P G R I+E G + V +KL H Y ++P D E + ++ +GIT
Sbjct: 6 LDTETTGMPVTDGHR--IIEIGCVEVIGRKLTGRH-YHVYLQP-DRE-VDEGAIAVHGIT 60
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP----APEPKGT 127
+ +V P F D+AD F+ + G HN FD I FA +G+ +
Sbjct: 61 NEFLVDKPRFRDVADEFFEFIKGAQLIIHNAA-FDIGFINNEFALLGQQDRADIADHCSV 119
Query: 128 IDSLALLTQRF-GRRAGDMKMASLATYFGL---GQQTHRSLDDVRMNLEVL 174
+D+L + +R G+R + +L +G+ G+ H +L D + +V
Sbjct: 120 LDTLLMARERHPGQRN---SLDALCKRYGVDNSGRDLHGALLDAEILADVF 167
>gi|418461449|ref|ZP_13032522.1| hypothetical protein SZMC14600_10868 [Saccharomonospora azurea SZMC
14600]
gi|359738445|gb|EHK87332.1| hypothetical protein SZMC14600_10868 [Saccharomonospora azurea SZMC
14600]
Length = 566
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 83/194 (42%), Gaps = 20/194 (10%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
I E GA+ V + E L ++TLV P P I V GIT V S+P +
Sbjct: 34 ITEIGAVKV--RGGEVLGEFATLVDPGQP--IPPQIVALTGITTAMVRSAPRIEHVLPAF 89
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRA--GDMK 146
G + HN FD + ++ A G P P + L T + RR G+++
Sbjct: 90 LAFAEGAVLVAHNA-GFDTSFLKAACRAHGYAWPTP------VVLCTLKLARRVLRGEVR 142
Query: 147 ---MASLATYFGLGQQ-THRSLDDVRMNLEVLKYCATVL--FLESSLPDIFTVNSWVSPN 200
+++LA FG THR+LDD R ++VL + SL ++ V+P
Sbjct: 143 SHRLSTLAALFGASTTPTHRALDDARATVDVLHGLLERVGPLGVQSLEELLDYLPDVTP- 201
Query: 201 ATTRSRSNAKSSPE 214
A R R AK PE
Sbjct: 202 AQRRKRDLAKDLPE 215
>gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC
BAA-895]
gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895]
Length = 246
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D + + G HN FD + FA++ R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDDFLEYIRGAELVIHNA-SFDIGFMDYEFAKLSRGIPKTSEF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKITDSLALARRMFPGKR 145
>gi|423656466|ref|ZP_17631765.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD200]
gi|401290988|gb|EJR96672.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD200]
Length = 315
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G P P+ K ID++ L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLGLPGPKNK-VIDTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAAI 171
>gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
gi|417974108|ref|ZP_12614932.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
gi|346329563|gb|EGX97858.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
Length = 968
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCN 68
A D+E T T P +++F + K+ ++ +STL+ P PE + +L+
Sbjct: 41 AVVDLEMT-GTNPNGSERLIQFSCVFTEGNKI--VNTFSTLINPLRKIPEDVQNLT---- 93
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
IT V S+PTF ++A T++ +L ++ HNI D + F IG P + +G I
Sbjct: 94 NITDKDVKSAPTFDEVAGTIYALLSDTVFVAHNI-ELDYRFLNSEFERIGFPKLDLEG-I 151
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQ 159
D++ L F A ++ LA + G +
Sbjct: 152 DTVQLAQIAFPTLAS-YRLGDLAHFLGFKHK 181
>gi|86151527|ref|ZP_01069741.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315123999|ref|YP_004066003.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|85841156|gb|EAQ58404.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315017721|gb|ADT65814.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
Length = 253
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAAKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ A + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|384442785|ref|YP_005659037.1| Exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni S3]
gi|419644822|ref|ZP_14176394.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9081]
gi|419659745|ref|ZP_14190261.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|419688415|ref|ZP_14216739.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1854]
gi|424846866|ref|ZP_18271458.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni NW]
gi|315057872|gb|ADT72201.1| Exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni S3]
gi|356485790|gb|EHI15778.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni NW]
gi|380621311|gb|EIB40122.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9081]
gi|380638696|gb|EIB56234.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|380665686|gb|EIB81250.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1854]
Length = 256
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|419682159|ref|ZP_14210898.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1213]
gi|380661842|gb|EIB77710.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1213]
Length = 253
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
PC184]
gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
PC184]
Length = 305
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 66 ILDTETTGLNARTGDR--LIEIGCVELLNRRLTGNNLHFYVNPERDSDP---GALAV--H 118
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++A + D + HN FD + FA +G P G
Sbjct: 119 GLTTEFLSDKPKFAEVAHQILDFVKDAELIIHNA-PFDLGFLDAEFARLGLPPFTEHCGG 177
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 178 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 222
>gi|92114064|ref|YP_573992.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM
3043]
gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
DSM 3043]
Length = 253
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNG 69
D ETT + + G R ++E GA+ V ++L H Y R DPE +V +G
Sbjct: 6 LDTETTGIDPKDGHR--LIEIGAVEVVNRRLTGNNYHQYINPERDIDPE-----AVEVHG 58
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA 115
IT + V P FADIAD ++ + G HN FD I F
Sbjct: 59 ITNERVADEPVFADIADAFWEYIRGAELVIHNAA-FDVGFIDHEFG 103
>gi|332185524|ref|ZP_08387272.1| exonuclease family protein [Sphingomonas sp. S17]
gi|332014502|gb|EGI56559.1| exonuclease family protein [Sphingomonas sp. S17]
Length = 191
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 44 ELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNIL 103
E+ Y TLV P D SS ++ +GIT D V+ PTFA + + L GR+ H+
Sbjct: 34 EVLAYETLVDPCDD--FSSFNIGIHGITADHVLGKPTFAALHPELAMHLGGRVTVAHS-- 89
Query: 104 RFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRS 163
FD + A P P +DS+ + +R + K+ +LA + L + H +
Sbjct: 90 GFDKGALGRACERDALP-PIAARWLDSVT-IARRAWPELPNHKLNTLAAFLELEHRHHDA 147
Query: 164 LDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEG 215
L D R +V+ L + T+ W +P + R+R + +G
Sbjct: 148 LSDARAAGQVV--------LRAMSATGLTLTDWFTPPLSARARRKVVRADQG 191
>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 3_1_53]
gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 3_1_53]
Length = 1271
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 21/150 (14%)
Query: 13 FDVETTVPTRPGQRF-AILEFGAILV----CPKKLEELHNYSTLVRPADPELISSLSVRC 67
FD+ETT + RF I+EFG +V C K L+ ++P P +S+ +
Sbjct: 224 FDLETTGLS---SRFDHIIEFGGQIVKDRACIKSLQ------MFIKP--PVALSAFTTEL 272
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR-PAPEPKG 126
GIT + + ++ +FAD D + D + I HN FD + + A IGR P P
Sbjct: 273 TGITEEHMKNAKSFADSIDEILDFIGDSILVAHNAT-FDYNFLNDELARIGRKPIMNP-- 329
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGL 156
ID+L L R G ++ +A +G+
Sbjct: 330 VIDTLDLARSMQADRKG-YRLGQIARSYGI 358
>gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
pallidum SS14]
gi|378973151|ref|YP_005221756.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|378974218|ref|YP_005222825.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|378975276|ref|YP_005223885.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum DAL-1]
gi|378982127|ref|YP_005230433.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. CDC2]
gi|384422147|ref|YP_005631506.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502505|ref|YP_006869949.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum str. Mexico A]
gi|6014996|sp|O83649.1|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon
gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
pallidum SS14]
gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
pallidum str. Chicago]
gi|374677475|gb|AEZ57768.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|374678545|gb|AEZ58837.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. CDC2]
gi|374679614|gb|AEZ59905.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|374680675|gb|AEZ60965.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum DAL-1]
gi|408475868|gb|AFU66633.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum str. Mexico A]
Length = 215
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 16/174 (9%)
Query: 7 RSEIAF--FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISS 62
+AF FD ETT R I+E GA+ K + + +STL+ P A P +S
Sbjct: 10 HEHVAFTAFDTETTGLKAEEDR--IIEIGAVTFDRKGI--IARFSTLIFPDRAIPPDVSK 65
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
+ N IT D +V+ P F +I + G + HN FD + + + + P
Sbjct: 66 I----NHITDDMLVNKPRFCEIVSDFSRFIKGTVLVAHN-ANFDVEFLNAELS-LCKKQP 119
Query: 123 EPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+D+ A+ F G ++ +LA FGL HR+ DD R+ +E+
Sbjct: 120 LSHKVVDTYAMAQAVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELF 173
>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
Length = 379
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AF D+ETT + R I E G ++V + ++TLV P P I + G
Sbjct: 15 LAFVDLETTGGSAVEHR--ITEIGVVVV---NANHVSTWTTLVDPQQP--IPPFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTFADIA + + L G+++ HN FD +R F G
Sbjct: 68 ITDAMVRGAPTFADIAPALLERLDGKLFVAHNA-SFDRGFLRAEFERAG 115
>gi|377564581|ref|ZP_09793896.1| DNA polymerase III epsilon subunit [Gordonia sputi NBRC 100414]
gi|377528158|dbj|GAB39061.1| DNA polymerase III epsilon subunit [Gordonia sputi NBRC 100414]
Length = 617
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 10/171 (5%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+ + D+ETT + R I E GA+ + + E L ++TLV P P I V
Sbjct: 49 TTLVVVDLETTGGSATNDR--ITEIGAVKI--RGGEVLGEFATLVDPGLP--IPPQIVAL 102
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT V +P ++ + + G I HN RFD + +R+ + P T
Sbjct: 103 TGITEAMVYDAPRIDEVLPSFIEFARGSILVAHNA-RFDMSFLRQNALRLHLQWPF-SAT 160
Query: 128 IDSLALLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKY 176
+ ++ + + GR A +++++LA F + + THR+LDD R +EV +
Sbjct: 161 LCTVTMARRILGRDEAPTVRLSALADLFDVTVRPTHRALDDARATVEVFHH 211
>gi|399926160|ref|ZP_10783518.1| exonuclease, RNase T and DNA polymerase III [Myroides injenensis
M09-0166]
Length = 257
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I FFD+ETT R I+E G + V P +E + LV P P I S + +G
Sbjct: 9 ICFFDLETTGIDVAKDR--IVEIGILKVFPNGNKESKTW--LVNPGMP--IPEHSTKIHG 62
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT + V + PTF ++A +++++ AG N RFD + E G
Sbjct: 63 ITDEQVANEPTFNELAPHIYNMIKDSDLAGFNSDRFDIPLLVEELLRAG 111
>gi|399031334|ref|ZP_10731368.1| exonuclease, DNA polymerase III, epsilon subunit family
[Flavobacterium sp. CF136]
gi|398070323|gb|EJL61628.1| exonuclease, DNA polymerase III, epsilon subunit family
[Flavobacterium sp. CF136]
Length = 462
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLS 64
+ E A D+ETT G R I E I+ + + + TLV P P I +L+
Sbjct: 3 KQEYAIVDIETTGGNASGSR--ITEIAIIIHNGTSV--IDRWETLVNPEKEIPLPIFALT 58
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GI + V S+P F DI++ V +L GRI+ HN+ FD + +R E G
Sbjct: 59 ----GINNEMVKSAPVFDDISEKVLQMLTGRIFVAHNV-NFDYSFVRHQLEEAG 107
>gi|377571758|ref|ZP_09800861.1| DNA polymerase III epsilon subunit [Gordonia terrae NBRC 100016]
gi|377530893|dbj|GAB46026.1| DNA polymerase III epsilon subunit [Gordonia terrae NBRC 100016]
Length = 620
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 29/197 (14%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+ + D+ETT + P R I E GA+ + + E + ++TLV P P I V
Sbjct: 62 TTLVVVDLETT-GSDPA-RDRITEIGAVKI--RGGEIIGEFATLVDPGRP--IPPQIVTL 115
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT + +P + + F+ G I HN RFD +R+ + P
Sbjct: 116 TGITTAMLTDAPRIESVLPSFFEFARGSILVAHNA-RFDMGFLRQNAIRLQLP------W 168
Query: 128 IDSLALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL------ 174
L L T RR A +K+++LA F + + THR+LDD R +EV
Sbjct: 169 TFGLTLCTVTMARRILTRDEAPTVKLSALADLFDVAVRPTHRALDDARATVEVFHRLLER 228
Query: 175 ---KYCATVLFLESSLP 188
+ ATV L S LP
Sbjct: 229 VGNQGIATVGDLTSYLP 245
>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
Length = 379
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AF D+ETT + R I E G ++V + ++TLV P P I + G
Sbjct: 15 LAFVDLETTGGSAVEHR--ITEIGVVVV---NANHVSTWTTLVDPQQP--IPPFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTFADIA + + L G+++ HN FD +R F G
Sbjct: 68 ITDAMVRGAPTFADIAPALLERLDGKLFVAHNA-SFDRGFLRAEFERAG 115
>gi|440224893|ref|YP_007331984.1| DNA polymerase III, epsilon subunit [Rhizobium tropici CIAT 899]
gi|440036404|gb|AGB69438.1| DNA polymerase III, epsilon subunit [Rhizobium tropici CIAT 899]
Length = 238
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 45 LHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILR 104
LH Y + P D + + ++ +GIT +++ P F ++AD + + W HN
Sbjct: 38 LHLY---INPGDRK-VHPDALAVHGITDESLKDKPPFEEVADKILNFFGDAKWIAHNAT- 92
Query: 105 FDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSL 164
FD + FA +GRP P ID+LA+ ++ G + +L +G+ +HR+
Sbjct: 93 FDMGFVNAEFARLGRPPILPDMVIDTLAMARRK--HPMGPNSLDALCRRYGI-DNSHRTK 149
Query: 165 DDVRMNLEVL 174
++ E+L
Sbjct: 150 HGALLDSELL 159
>gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str.
Toulouse]
gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str.
Toulouse]
Length = 235
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE--LISSLSVRCN 68
FD ETT + R I+E G + + + L + H Y +P+ +IS +V +
Sbjct: 6 FDTETTGLDKEKDR--IIEIGCVEMIDRYLTGKRFHVY------LNPQGVVISDEAVAIH 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
G+T + + + +F+DIAD + + + G HN FD + + +P +
Sbjct: 58 GLTNERLKNEKSFSDIADELLEFISGATMVAHNA-SFDIGFLNAELGRVNKPLISVDNIL 116
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ ++F G + L FG+ +HR ++ E+L
Sbjct: 117 DTLAMARRKFP--MGPNSLDVLCKRFGI-DNSHRVFHGALLDAEIL 159
>gi|417954503|ref|ZP_12597537.1| DNA polymerase III subunit epsilon [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342815223|gb|EGU50147.1| DNA polymerase III subunit epsilon [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 244
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 6 DRSEIAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELIS 61
++ I D ETT + G Q I+E GA+ + +KL H + ++P I
Sbjct: 8 EQHRIVVLDTETTGMNQEGGPHYQGHRIIEIGAVEIINRKLTGRH-FHVYIKP--DRDIQ 64
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA----EI 117
S +V +GIT + +V P + D+ D + G HN FD + F I
Sbjct: 65 SEAVEVHGITDEFLVDKPEYQDVHAEFLDFIKGAELVAHNA-PFDTGFMDYEFGMLDPTI 123
Query: 118 GRPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
G+ K T D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 124 GKTDDYCKVT-DTLAMAKKIFPGKRN---NLDVLCDRYGI-DNSHRTLHGALLDAEIL 176
>gi|315497459|ref|YP_004086263.1| DNA polymerase III subunit epsilon [Asticcacaulis excentricus CB
48]
gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
48]
Length = 717
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 15/165 (9%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT +R + E GA+ + + E + + +L+ P P I+ L+ GI+
Sbjct: 549 DIETTGGQSANER--VTEIGAVKI--RNGEIIDTWQSLINPERRIPPFITELT----GIS 600
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V +P FADIAD L G ++ HN+ FD + + + RP PK + ++
Sbjct: 601 NAMVRDAPRFADIADDFDAFLKGTVFVAHNV-NFDYGFLSAEYRRLERPFRYPK--MCTV 657
Query: 132 ALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
A + + F A + L+ FG+ + HR+L D E+LK
Sbjct: 658 ASMRRHFPGLAA-YGLGPLSREFGIELKNHHRALSDAMAAAELLK 701
>gi|410479996|ref|YP_006767633.1| DNA polymerase III subunit epsilon [Leptospirillum ferriphilum
ML-04]
gi|406775248|gb|AFS54673.1| DNA polymerase III, epsilon subunit [Leptospirillum ferriphilum
ML-04]
Length = 265
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
++ F DVETT R R I+E G KL L STL++ AD P+ IS +
Sbjct: 2 KVTFLDVETTGLLRD-SRARIIELGFSSWENGKL--LRKTSTLIKGADIVPDNIS----K 54
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
NGIT + + +P F ++ ++ + G + HN L FD + R P
Sbjct: 55 INGITTEMLKDAPRFEEVWKSIKGDIQGSLLVAHN-LAFDVGMVNRELILADR-IPLGNM 112
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFG-LGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
ID+L L+++ ++ +A + G L + HR++ D LE L+ + L
Sbjct: 113 GIDTLP-LSRKMLPELSSYRLGEIAKHMGILNENPHRAMGD----LETLEKIVSNLL--G 165
Query: 186 SLPDIF 191
SLP F
Sbjct: 166 SLPGTF 171
>gi|336248853|ref|YP_004592563.1| DNA polymerase III subunit epsilon [Enterobacter aerogenes KCTC
2190]
gi|444353004|ref|YP_007389148.1| DNA polymerase III epsilon subunit (EC 2.7.7.7) [Enterobacter
aerogenes EA1509E]
gi|334734909|gb|AEG97284.1| DNA polymerase III subunit epsilon [Enterobacter aerogenes KCTC
2190]
gi|443903834|emb|CCG31608.1| DNA polymerase III epsilon subunit (EC 2.7.7.7) [Enterobacter
aerogenes EA1509E]
Length = 243
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+AD + + G HN FD + F ++ R + +
Sbjct: 66 HGIADEFLMDKPTFADVADEFMEYIRGAELVIHNA-SFDIGFMDYEFKKLNRGIEKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
Length = 245
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 18/178 (10%)
Query: 6 DRSEIAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELIS 61
++ I D ETT R G Q I+E GA+ + +KL H + ++P D E I
Sbjct: 8 NQHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEIINRKLTGRH-FHVYIKP-DRE-IQ 64
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA----EI 117
+V +GIT + +V P + D+ + + G HN FD + F I
Sbjct: 65 PDAVEVHGITDEFLVDKPDYRDVHAEFLEFIKGAELVAHNA-PFDVGFMDHEFGMLDPSI 123
Query: 118 GRPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
G+ K T D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 124 GKTVDYCKVT-DTLAMAKKIFPGKRN---NLDILCDRYGI-DNSHRTLHGALLDAEIL 176
>gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu]
Length = 242
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARAGDR--LIEIGCVELLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++ D + D + G HN FD + FA + P G
Sbjct: 58 GLTTEFLSDKPKFAEVVDQIRDFVKGAELIIHNA-PFDLGFLDAEFARLDLPPFTEHCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|120436594|ref|YP_862280.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
gi|117578744|emb|CAL67213.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
Length = 258
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I FFD+ETT R I+E + V P +E H + LV P I + + +G
Sbjct: 9 ICFFDLETTGTNISKDR--IVEIAVLKVFPNGNKESHTW--LVNPERE--IPAEVIAIHG 62
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFD 106
IT + V + PTF ++A + D++ G G+N RFD
Sbjct: 63 ITNEKVANEPTFKELAQKIHDLIKGCDLGGYNSNRFD 99
>gi|392955788|ref|ZP_10321318.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus macauensis ZFHKF-1]
gi|391878030|gb|EIT86620.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus macauensis ZFHKF-1]
Length = 936
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCNGIT 71
DVETT P + I++ GA++V + E + +S+ V P A P I L+ GI
Sbjct: 9 DVETT-GNAPAKGDRIIQIGAVVV--ENHEIVQRFSSFVNPEVAIPPFIEQLT----GID 61
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V +P F ++A T+ +L G + HN+L FD ++E F G + G +
Sbjct: 62 DSMVQDAPLFEEVAPTLLTMLEGAYFVAHNVL-FDLNFLQEEFQRCGYATFQ--GPLLDT 118
Query: 132 ALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVL 174
L + +A ++ LA Y G+ + H++ D + +L
Sbjct: 119 VELARLLFLQADGYQLNQLADYLGIVHENPHQADSDAEVTAHLL 162
>gi|383790057|ref|YP_005474631.1| DNA polymerase III subunit epsilon family exonuclease [Spirochaeta
africana DSM 8902]
gi|383106591|gb|AFG36924.1| exonuclease, DNA polymerase III, epsilon subunit family
[Spirochaeta africana DSM 8902]
Length = 188
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 14/185 (7%)
Query: 1 MGPTQDRSEIAF--FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPE 58
M P +EI FD ETT + I+EFGA+ + +++ ++ L P P
Sbjct: 1 MDPNTSLAEITLTAFDFETTGLHAGIDK--IVEFGAVQF--RDGQQVGSFEALCNPGIP- 55
Query: 59 LISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
I + R +GIT + V P+ ++ + + HN +FD +R A E G
Sbjct: 56 -IHPDAARVSGITDEMVAGEPSVQEVLQQFIGFVGDSVLIAHNA-QFDLGFLRAALLEFG 113
Query: 119 RPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKY 176
P + + ID+ L + F G+++ + +L + G+ T HR+ DD M + +
Sbjct: 114 LPDMKNQ-VIDTQKLAQKAFPGQKS--YSLQNLVAFLGIPPNTAHRAKDDAYMCMRLFTA 170
Query: 177 CATVL 181
A L
Sbjct: 171 AADAL 175
>gi|262194078|ref|YP_003265287.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077425|gb|ACY13394.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-----ADPELISSLS 64
+ F D ETT +R ILE AI V P+ L+E VRP ADPE +
Sbjct: 4 LVFIDCETT--GLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPE-----A 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-RPAPE 123
+ NG A + + D + +L G + AGHN+ FD + A+ +G RP
Sbjct: 57 LEVNGYRRRAWADAVSLGDAMAELAPMLEGAVLAGHNV-AFDRRFLEAAWDCVGHRPENL 115
Query: 124 PKGTIDSLALLTQRFGRRAGDMKMASL---ATYFG-LGQQTHRSLDDVRMNLEV 173
+D+ AL AG++ SL + G L + H + DDVR +L V
Sbjct: 116 DHHALDTAALAFPLL--MAGEIDSLSLTPVCAHLGVLRGEEHWAFDDVRASLGV 167
>gi|424866610|ref|ZP_18290442.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
'C75']
gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum]
gi|387222699|gb|EIJ77118.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
'C75']
Length = 265
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
++ F DVETT R R I+E G KL L STL++ AD P+ IS +
Sbjct: 2 KVTFLDVETTGLLRD-SRARIIELGFSSWENGKL--LRKTSTLIKGADIVPDNIS----K 54
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
NGIT + + +P F ++ ++ + G + HN L FD + R P
Sbjct: 55 INGITTEMLKDAPRFEEVWKSIKGDIQGSLLVAHN-LAFDVGMVNRELILADR-IPLGNM 112
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFG-LGQQTHRSLDDVRMNLEVLKYCATVLFLES 185
ID+L L+++ ++ +A + G L + HR++ D LE L+ + L
Sbjct: 113 GIDTLP-LSRKMLPELSSYRLGEIAKHMGILNENPHRAMGD----LETLEKIVSNLL--G 165
Query: 186 SLPDIF 191
SLP F
Sbjct: 166 SLPGTF 171
>gi|427390153|ref|ZP_18884559.1| exonuclease, DNA polymerase III, epsilon subunit [Actinobaculum
massiliae ACS-171-V-Col2]
gi|425733168|gb|EKU95974.1| exonuclease, DNA polymerase III, epsilon subunit [Actinobaculum
massiliae ACS-171-V-Col2]
Length = 603
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 13/166 (7%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT RPG+ +I E GA+ + E L +STL+ P P I + GI+
Sbjct: 52 DLETTG-GRPGKN-SITEIGAVKT--RGGETLGEFSTLINPEVP--IPAHITMLTGISTS 105
Query: 74 AVVSSPTFADIADTVFDILHGR---IWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
+P A+ D + + HN RFD +R A + R P P +D+
Sbjct: 106 MTYDAPLIAEALPKFIDFVVADSPVVLVAHNA-RFDVGHLRGAAQAVEREFP-PVQVLDT 163
Query: 131 LALLTQRFGR-RAGDMKMASLATY-FGLGQQTHRSLDDVRMNLEVL 174
L L + F R + K+ +LA + THR+LDD R ++VL
Sbjct: 164 LKLARRIFTRDEVPNYKLGTLAGFCHAAVAPTHRALDDARATVDVL 209
>gi|334337307|ref|YP_004542459.1| DNA polymerase III subunit epsilon [Isoptericola variabilis 225]
gi|334107675|gb|AEG44565.1| DNA polymerase III, epsilon subunit [Isoptericola variabilis 225]
Length = 578
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
I E GA+ V + E L +LV P P + + R GIT V ++P A + +
Sbjct: 42 ITEIGAVKV--RGGEVLGELQSLVNPGHP--VPAFVARLTGITTAMVATAPDLALVLPSF 97
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMKM 147
+ G + HN +D +R A +G P P + +D++ L + R A + K+
Sbjct: 98 LEFARGSVLVAHNAP-YDVGFLRAACERLGYPWPGFR-VVDTVPLARRVVTRDEAPNHKL 155
Query: 148 ASLATYF-GLGQQTHRSLDDVRMNLEVL 174
++LA F HR+L D R ++VL
Sbjct: 156 STLAALFRARTTPQHRALADARATVDVL 183
>gi|392331074|ref|ZP_10275689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus canis FSL Z3-227]
gi|391418753|gb|EIQ81565.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus canis FSL Z3-227]
Length = 819
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+E T G AI++ G +++ K++ E Y T + P +P +S GI
Sbjct: 10 AVIDLEAT---NAGVTAAIIQVGIVIIEGKEIVE--TYQTDINPHEP--LSDHIKTLTGI 62
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T D + +P F+ +A T+++++ ++ HN+ +FD + EA G P+ +D+
Sbjct: 63 TDDQLAKAPDFSQVAKTIYELISDCVFVAHNV-KFDANLLAEALFLEGYDLLTPR--VDT 119
Query: 131 LALLTQRFGRRAGDMKMASLATYFGL 156
+ L Q F ++ L+ GL
Sbjct: 120 VE-LAQIFFPHLEKYNLSYLSKQLGL 144
>gi|453069251|ref|ZP_21972517.1| hypothetical protein G418_11428 [Rhodococcus qingshengii BKS 20-40]
gi|452764003|gb|EME22277.1| hypothetical protein G418_11428 [Rhodococcus qingshengii BKS 20-40]
Length = 608
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
SE F V+ + +I E GA+ + + E L +TLV P I V
Sbjct: 59 SETTFVVVDLETTGGSADQDSITEIGAVKI--RGGEVLGEMATLVDPG--RSIPPYIVEL 114
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT ++ +P + + G + HN FD ++ A + RP P +
Sbjct: 115 TGITTAMLIGAPPIERVLPAFLEFAEGAVLVAHNAP-FDIGFLKAAASRSARPWPAFR-- 171
Query: 128 IDSLALLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T + RR A +K+++LA F + Q THR+LDD R ++VL
Sbjct: 172 ----VLCTVKLARRVLTRDEAPSVKLSALAHLFQVTTQPTHRALDDARATVDVL 221
>gi|411009925|ref|ZP_11386254.1| DNA polymerase III subunit epsilon [Aeromonas aquariorum AAK1]
gi|423196036|ref|ZP_17182619.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila SSU]
gi|404632837|gb|EKB29439.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila SSU]
Length = 244
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 23/174 (13%)
Query: 12 FFDVETTV------PTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSL 63
D ETT P G R I+E G + V +KL H Y R DPE
Sbjct: 11 ILDTETTGMNTAGGPVYLGHR--IIEIGCVEVINRKLTGNHFHVYIKPDRLVDPE----- 63
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PA 121
+++ +GIT + + P+F+ IAD + + G HN FD + + F+++G
Sbjct: 64 AIQVHGITDEFLRDKPSFSQIADEFIEFIRGAELIAHNA-PFDVSFMDYEFSKLGLNFKT 122
Query: 122 PEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+ G D+LA+ F G+R + L +G+ +HR+L ++ E+L
Sbjct: 123 ADICGITDTLAMARDLFPGKRN---NLDVLCDRYGI-DNSHRTLHGALLDAEIL 172
>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
Length = 329
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + I+ V + E H Y TLV P DP V +G
Sbjct: 22 AVVDVETTGLARDDR---IVSAAVYRVDARGEVEDHWY-TLVNPERDPG-----PVWIHG 72
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +P F +IA+ + L GR+ HN + FD + + +A G AP + +
Sbjct: 73 LTSEVLEGAPLFPEIAEELSRRLDGRVLVAHNAV-FDWSMLAREYARAGITAPV-RRRLC 130
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
++A L + + K+ +LA +FG+ Q + H +LDD R+ E +
Sbjct: 131 TIA-LAKELALPLPNHKLETLAAHFGVEQRRAHHALDDARVLAEAFR 176
>gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
3301]
gi|444312372|ref|ZP_21147959.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium M86]
gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
3301]
gi|443484285|gb|ELT47100.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium M86]
Length = 233
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPK--KLEELHNYSTLVRPADPELISSLSVRCNGI 70
FD ETT R R ++E G + + K H Y + P + + + ++ +GI
Sbjct: 6 FDTETTGLERLEDR--VIEIGGVELINKFPTGRTFHKY---INPQGRQ-VHAEALAVHGI 59
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
+ + ++ PTFA+I D + G HN + FD I A +G+ + + +D+
Sbjct: 60 SNEQLLDKPTFAEILDEFLEFFDGAKLVAHNAM-FDLGFINAELARLGQAEIQVERVVDT 118
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
LAL ++ G + +L +G+ + HR+L ++ E+L
Sbjct: 119 LALARRK--HPMGPNSLDALCKRYGI-ENGHRTLHGALLDSEIL 159
>gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
gi|427424441|ref|ZP_18914564.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-136]
gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
gi|425698741|gb|EKU68374.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-136]
Length = 459
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y + P P S +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY---INPQKP---VGDSENIH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GI+ D + P +ADIADT+FD L G HN FD + F +G PA E
Sbjct: 287 GISDDFLKDKPLYADIADTLFDYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|363423197|ref|ZP_09311268.1| hypothetical protein AK37_21349, partial [Rhodococcus
pyridinivorans AK37]
gi|359732338|gb|EHK81358.1| hypothetical protein AK37_21349, partial [Rhodococcus
pyridinivorans AK37]
Length = 396
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ + + E L ++TLV P P I V+ GIT V ++P ++
Sbjct: 33 AITEIGAVKI--RGGEVLGEFATLVDPGRP--IPPYIVQLTGITTAMVYAAPKVEEVLPA 88
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMK 146
+ G + HN FD + A A+ P + + ++ L + GR A +K
Sbjct: 89 FLEFASGAVLVAHNA-GFDVGFLEAATAQCELAWPRFQ-VLCTVKLARRVLGRDEAPSVK 146
Query: 147 MASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
+++LA F + THR+LDD R ++VL
Sbjct: 147 LSALAELFRVSTVPTHRALDDARATVDVL 175
>gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004]
gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Xenorhabdus bovienii SS-2004]
Length = 249
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHLYIKPERLVDPE-----AFEV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR---PAPEP 124
+GI+ + + PTFADIAD + + G HN FD + F ++ R P +
Sbjct: 66 HGISDEFLQDKPTFADIADEFIEFIRGAELIIHNA-TFDIGFMDYEFRKLNRDIPPTADF 124
Query: 125 KGTIDSLALLTQRF-GRR 141
DSL L Q F G+R
Sbjct: 125 CTITDSLVLARQLFPGKR 142
>gi|291295679|ref|YP_003507077.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM
1279]
gi|290470638|gb|ADD28057.1| Exonuclease RNase T and DNA polymerase III [Meiothermus ruber DSM
1279]
Length = 200
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 35/168 (20%)
Query: 19 VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSS 78
VP R G ++EFGA +Y +LVRP P+ +S ++ + I P + ++
Sbjct: 38 VPIRGG----VIEFGA------------HYYSLVRPVRPQALSVEGIQAHHILPSELEAA 81
Query: 79 PTFADIADTVFDILHGRIWAGHNILRF---DCARIREAFAEIGRPAPEPKGTIDSLALLT 135
P A V D + RI IL F D + +R+++ +GRP P+P +D+ A+L
Sbjct: 82 PPLAQ----VLDEMEQRIGQDVLILHFSSIDLSFLRQSYKTLGRPWPKPL-VVDT-AVLL 135
Query: 136 QRFGRRAGDMK---------MASLATYFGL-GQQTHRSLDDVRMNLEV 173
R R ++ + + FGL G H +L D E+
Sbjct: 136 ARLNERKRWLEPHSQPYPGALGAARATFGLPGHLEHHALWDALATAEL 183
>gi|408532903|emb|CCK31077.1| DNA polymerase III subunit epsilon [Streptomyces davawensis JCM
4913]
Length = 327
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + + A+ + E ++ TLV P DP V +G
Sbjct: 24 AVVDVETTGLARDDRIIS----AAVYRLDARGEVEDHWYTLVNPERDPG-----PVWIHG 74
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +P F DIA + L R+ HN + FD I +A AP + +
Sbjct: 75 LTSEVLEGAPLFPDIAAEFSERLADRVLVAHNAV-FDWQMIAREYARARCEAPV-RQRLC 132
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
++A L++ G + K+ SLA +FG+ QQ H +LDD R+ E +
Sbjct: 133 TIA-LSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFR 178
>gi|419626277|ref|ZP_14159271.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23223]
gi|380603563|gb|EIB23654.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23223]
Length = 253
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA + K E+ + + V+ + PE I+
Sbjct: 65 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAAKIQNSK--EIGRFQSFVKVKEIPENIT 119
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ A + L I+ HN+ RFD + I +A E G
Sbjct: 120 ELT----GITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 172
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 173 ----GILLNRRVCTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
Length = 336
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVETT R + I+ + + E H Y+T+ DP V +G+
Sbjct: 23 AVVDVETTGLARDDR---IISAAVYRLDARGEVEDHWYTTVNPERDPG-----PVWIHGL 74
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T +A+ +P F ++A L GR+ HN + FD + I +A G+ P + + +
Sbjct: 75 TSEALEGAPLFHEVAGEFAARLTGRVLVAHNAV-FDWSMIAREYARAGQ-EPPVRQRLCT 132
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
+A L++ + K+ +LA +FG+ Q + H +LDD R+ E +
Sbjct: 133 IA-LSKALALPLPNHKLETLAAHFGVVQRRAHHALDDARVLAEAFR 177
>gi|375133954|ref|YP_004994604.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
Length = 459
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y + P P S +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY---INPQKP---VGDSENIH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GI+ D + P +ADIADT+FD L G HN FD + F +G PA E
Sbjct: 287 GISDDFLKDKPLYADIADTLFDYLKGAEIIAHNA-TFDMNFLDMEFKRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586]
gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586]
Length = 244
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
D ETT + G + I+E GA+ V ++L H + +RP LI + +G
Sbjct: 11 LDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRH-FHVYLRP--DRLIDPEAYNVHG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PAPEPKGT 127
I+ + + PT+A++AD D + G HN FD + F +GR P E T
Sbjct: 68 ISDEFLADKPTYAEVADDFIDFIRGAELVIHNA-SFDIGFMDYEFRLLGRDIPKTETFCT 126
Query: 128 IDSLALLTQRF--GRR 141
I L+ +R G+R
Sbjct: 127 ITDSLLMARRLFPGKR 142
>gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
SK121]
gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis
SK121]
Length = 608
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
SE F V+ + +I E GA+ + + E L +TLV P I V
Sbjct: 59 SETTFVVVDLETTGGSADQDSITEIGAVKI--RGGEVLGEMATLVDPG--RSIPPYIVEL 114
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT ++ +P + + G + HN FD ++ A + RP P +
Sbjct: 115 TGITTAMLIGAPPIERVLPAFLEFAEGAVLVAHNAP-FDIGFLKAAASRSARPWPAFR-- 171
Query: 128 IDSLALLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T + RR A +K+++LA F + Q THR+LDD R ++VL
Sbjct: 172 ----VLCTVKLARRVLTRDEAPSVKLSALAHLFQVTTQPTHRALDDARATVDVL 221
>gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus
erythropolis PR4]
Length = 586
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
SE F V+ + +I E GA+ + + E L +TLV P I V
Sbjct: 37 SETTFVVVDLETTGGSADQDSITEIGAVKI--RGGEVLGEMATLVDPG--RSIPPYIVEL 92
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT ++ +P + + G + HN FD ++ A + RP P +
Sbjct: 93 TGITTAMLIGAPPIERVLPAFLEFAEGAVLVAHNAP-FDIGFLKAAASRSARPWPSFR-- 149
Query: 128 IDSLALLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T + RR A +K+++LA F + Q THR+LDD R ++VL
Sbjct: 150 ----VLCTVKLARRVLTRDEAPSVKLSALAHLFQVTTQPTHRALDDARATVDVL 199
>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
Length = 334
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 14/175 (8%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELIS 61
PT A DVETT R + I+ + + E H Y TLV P DP
Sbjct: 24 PTAYPEGYAVVDVETTGLAREDR---IVSAAVYRLDAQGNVEDHWY-TLVNPQRDPG--- 76
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
V +G+T D + +P F DIA L R+ HN + FD I +A A
Sbjct: 77 --PVWIHGLTSDMLQDAPLFKDIAGEFAGRLADRVLVAHNAI-FDWQMIAREYARAEETA 133
Query: 122 PEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVLK 175
P + + ++A L++ + K+ SLA +FG+ QQ H +LDD R+ E +
Sbjct: 134 PV-RQRLCTIA-LSKELNLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFR 186
>gi|57237506|ref|YP_178520.1| DNA polymerase III subunit epsilon [Campylobacter jejuni RM1221]
gi|57166310|gb|AAW35089.1| exonuclease, DNA polymerase III, epsilon subunit family
[Campylobacter jejuni RM1221]
Length = 233
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 4 TQDRSEI-AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD-PELIS 61
T+ + EI D+E+T G+ ILE GA+ + K E+ + + V+ + PE I+
Sbjct: 42 TKIKDEIFCIVDIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPENIT 96
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121
L+ GIT + V ++P+ + L I+ HN+ RFD + I +A E G
Sbjct: 97 ELT----GITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECGF-- 149
Query: 122 PEPKGTIDSLALLTQRFGR---RAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
G + + + T F + + K+ L + G+ HR+LDD E+ KYC
Sbjct: 150 ----GILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 204
>gi|415780839|ref|ZP_11490626.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14]
gi|323157950|gb|EFZ44052.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14]
Length = 246
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
Tu6071]
gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
Tu6071]
Length = 331
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + I+ V + E H Y TLV P DP V +G
Sbjct: 20 AVVDVETTGLARDDR---IVSAAVYRVDARGEVEDHWY-TLVNPERDPG-----PVWIHG 70
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +P F +IA+ + L GR+ HN + FD + + +A G AP + +
Sbjct: 71 LTSEVLEGAPLFPEIAEELSRRLDGRVLVAHNAV-FDWSMLAREYARAGITAPV-RRRLC 128
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
++A L + + K+ +LA +FG+ Q + H +LDD R+ E +
Sbjct: 129 TIA-LAKELALPLPNHKLETLAAHFGVEQRRAHHALDDARVLAEAFR 174
>gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
Length = 482
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
S +AF DVE+T P R I E + V + E + + +LV P P I L
Sbjct: 5 SRLAFIDVESTG-AHP-VRDRITEIAILRV--EDGEVVARWESLVAPGQP--IPPLIEEV 58
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
GI+ V +P F +ADTV +L G ++ H+ RFD IR AF IGR
Sbjct: 59 TGISDAMVAEAPAFEVLADTVAALLEGCVFVAHSA-RFDYGFIRNAFTRIGR 109
>gi|117619304|ref|YP_856106.1| DNA polymerase III subunit epsilon [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 244
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 12 FFDVETTV------PTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSL 63
D ETT P G R I+E G + V +KL H Y R DPE
Sbjct: 11 ILDTETTGMNTAGGPVYLGHR--IIEIGCVEVINRKLTGNHFHVYIKPDRLVDPE----- 63
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PA 121
+++ +GIT + + P+F+ IAD + + G HN FD + + F ++G
Sbjct: 64 AIQVHGITDEFLRDKPSFSQIADEFIEFIRGAELIAHNA-PFDVSFMDYEFGKLGLNFKT 122
Query: 122 PEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+ G D+LA+ F G+R + L +G+ +HR+L ++ E+L
Sbjct: 123 ADICGITDTLAMARDLFPGKRN---NLDVLCDRYGI-DNSHRTLHGALLDAEIL 172
>gi|423202221|ref|ZP_17188800.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER39]
gi|404615373|gb|EKB12345.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER39]
Length = 244
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 25/175 (14%)
Query: 12 FFDVETTV------PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP---ADPELISS 62
D ETT P G R I+E G + V +KL H Y ++P DPE
Sbjct: 11 ILDTETTGMNTAGGPVYLGHR--IIEIGCVEVINRKLTGNH-YHVYIKPDRLVDPE---- 63
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--P 120
+++ +GIT + + P+F+ IAD D + G HN FD + + F+++G
Sbjct: 64 -AIQVHGITDEFLRDKPSFSQIADEFLDFIRGAELIAHNA-PFDVSFMDYEFSKLGLNFK 121
Query: 121 APEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+ D+LA+ F G+R + L +G+ +HR+L ++ E+L
Sbjct: 122 TADICTITDTLAMARDLFPGKRN---NLDVLCDRYGI-DNSHRTLHGALLDAEIL 172
>gi|383753932|ref|YP_005432835.1| hypothetical protein SELR_11040 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365984|dbj|BAL82812.1| hypothetical protein SELR_11040 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 325
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT + + +P F DIAD +++ LH I GHNI FD + + + + +
Sbjct: 96 GITSEMLSGAPKFEDIADALWNFLHNEILVGHNI-HFDLNFLYDNLFDHNQSYILNNDFV 154
Query: 129 DSLALLTQRFGRRA----GDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
D T R R A ++ L YF + Q HR+ D + VL+ A ++
Sbjct: 155 D-----TMRIARLALPDLEHHRLIDLDDYFDIQSQHHRAESDCQTTTIVLQELAKLV 206
>gi|423106773|ref|ZP_17094468.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5243]
gi|423112655|ref|ZP_17100346.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5245]
gi|376388899|gb|EHT01591.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5243]
gi|376390149|gb|EHT02835.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5245]
Length = 246
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P F D+ D D + G HN FD + F+++ R P+
Sbjct: 69 HGIADEFLMDKPVFGDVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFSKLNRGIPKTDTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
BMB171]
gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
B4264]
gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
BMB171]
Length = 315
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + C +
Sbjct: 164 VYQKCVAI 171
>gi|410084914|ref|ZP_11281635.1| DNA polymerase III epsilon subunit [Morganella morganii SC01]
gi|409768559|gb|EKN52619.1| DNA polymerase III epsilon subunit [Morganella morganii SC01]
Length = 257
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLVRP---ADPELISSLSVR 66
D ETT + G + I+E GA+ V ++L N+ +RP DPE
Sbjct: 24 LDTETTGMNKLGAHYEGHNIIEIGAVEVINRRLTG-RNFHLYIRPDRLVDPEAFG----- 77
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR---PAPE 123
+GI+ + ++ P FADIAD + + G HN FD + F ++ R P E
Sbjct: 78 VHGISDEFLMDKPVFADIADEFIEFIRGAELVIHNA-PFDIGFMDYEFRKLNRGIPPTAE 136
Query: 124 PKGTIDSLALLTQRF-GRR 141
DSL L Q F G+R
Sbjct: 137 FCTITDSLTLARQLFPGKR 155
>gi|303256972|ref|ZP_07342986.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
1_1_47]
gi|302860463|gb|EFL83540.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
1_1_47]
Length = 260
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNG 69
D ETT + + G R I+E G + + L + H Y R + E+I R +
Sbjct: 6 LDTETTGMAAKEGDR--IIEIGCVELGEHGLTDKNFHEYIDPERQMEAEVI-----RVHK 58
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE----PK 125
IT + +V P FADIAD + + G HN +FD + E ++G+P+ E
Sbjct: 59 ITNEFLVGKPKFADIADKFIEFVQGARLIIHNA-QFDIGFLNEELRKLGKPSMEEICGKD 117
Query: 126 GTIDSLALLTQRF 138
IDS+ L F
Sbjct: 118 NIIDSMELAKAAF 130
>gi|124002773|ref|ZP_01687625.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
gi|123992001|gb|EAY31388.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
Length = 270
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSV 65
++ + FFD+ETT R I+E+ I P E V+ +PE+ I S
Sbjct: 8 KNPLVFFDLETTGTNIAKDR--IVEWAFIKALPNGEIE-----KDVKKINPEMPIPIESS 60
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
+GI + V +PTF IA + L G AG+NI+RFD + E F +G
Sbjct: 61 LVHGIYDEHVKDAPTFKSIAKNLVKFLEGCDLAGYNIVRFDVPVLVEEFLRVG 113
>gi|429119810|ref|ZP_19180514.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 680]
gi|426325725|emb|CCK11251.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 680]
Length = 243
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFMV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + +++ P F D+ D D + G HN FD + F + R P+ +
Sbjct: 66 HGISDEFLMNKPVFGDVVDDFLDYIRGAELVIHNA-SFDIGFMDYEFGMLNRSIPKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|443702652|gb|ELU00575.1| hypothetical protein CAPTEDRAFT_101314 [Capitella teleta]
Length = 239
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 11/173 (6%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGIT 71
D ETT P Q I+E G + + +KL H Y + P ++ ++ +GIT
Sbjct: 5 ILDTETT-GIDPKQGHRIIEIGCVEMIGRKLTGNH-YHVYINP--QRIVEQEAIAVHGIT 60
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK---GTI 128
+ + P F+ IAD + + G HN FD I FA + R P+ + G +
Sbjct: 61 NEDLADKPVFSAIADEFLEFIRGAELVIHNA-PFDTGFINHEFALLRRGFPKVEDCCGVL 119
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVL 181
D+LAL ++ + ++ A YF + R+L ++ E+L V+
Sbjct: 120 DTLALARKKHPGQKNNLD-ALCKRYF--IDNSSRTLHGALLDAEILAEVYLVM 169
>gi|365845523|ref|ZP_09386289.1| DNA polymerase III, alpha subunit [Flavonifractor plautii ATCC
29863]
gi|373115402|ref|ZP_09529576.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnospiraceae bacterium 7_1_58FAA]
gi|364560056|gb|EHM38012.1| DNA polymerase III, alpha subunit [Flavonifractor plautii ATCC
29863]
gi|371670468|gb|EHO35549.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnospiraceae bacterium 7_1_58FAA]
Length = 1386
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 11/160 (6%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+I FD+ETT + +R I E GA+++ + E + +ST P P ++
Sbjct: 362 GDIVCFDIETTGLDK--RRDVITEIGAVVL--RNGEVVEQFSTFADPERP--LTREITEL 415
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT + + +P+ A+ + D + R A HN FD I E +GRP +
Sbjct: 416 TGITDEMLRGAPSQAEAINAFLDFVGERPLAAHNA-EFDMGFIAEGCRRMGRPFDST--S 472
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGL-GQQTHRSLDD 166
ID+L +L Q G K+ +A + L HR+ DD
Sbjct: 473 IDTL-ILAQNLLPELGKHKLDIVAEHLNLPAFNHHRAYDD 511
>gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae]
Length = 254
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRHFHVYIKPARLVDPE-----AFEV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+GI+ + + PTFA IAD D + G HN FD + F+++ R P P
Sbjct: 66 HGISDEFLQDKPTFAQIADEFLDFIRGAELVIHNA-PFDIGFMDYEFSKLNRDIP-PTAN 123
Query: 128 I----DSLALLTQRF-GRR 141
DSL L + F G+R
Sbjct: 124 FCQITDSLVLARKLFPGKR 142
>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
Length = 488
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 48 YSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDC 107
+ TL+ P P I R GIT V +PTF +IAD +F L G++ HN RFD
Sbjct: 45 WQTLLNPLRP--IPPWITRLTGITDATVADAPTFDEIADELFACLDGKVIVAHNA-RFDY 101
Query: 108 ARIREAFAEIG 118
+ +R++F G
Sbjct: 102 SFLRQSFQRCG 112
>gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
Length = 237
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNGI 70
D ETT G I+E G + + +KL H Y R DPE ++ +GI
Sbjct: 6 LDTETT---GIGDGHRIIEIGCVELVGRKLTGRHYHQYINPQREVDPE-----AMEVHGI 57
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PAPEPKGTI 128
T + + P FA +A+ D ++G HN FD + FA++ E G +
Sbjct: 58 TDEFLADKPVFAQVANEFLDFINGAELVIHNA-PFDVGFMDMEFAKLSNFPKTAEVCGVL 116
Query: 129 DSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+L L + + G+R + +L G+ +HR L ++ E+L
Sbjct: 117 DTLTLARKMYPGQRN---SLDALCRRLGI-DNSHRELHGALLDSEIL 159
>gi|409392387|ref|ZP_11243955.1| DNA polymerase III epsilon subunit [Gordonia rubripertincta NBRC
101908]
gi|403197725|dbj|GAB87189.1| DNA polymerase III epsilon subunit [Gordonia rubripertincta NBRC
101908]
Length = 608
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+ + D+ETT R I E GA+ + + E + ++TLV P P I V
Sbjct: 35 TTLVVVDLETTGSNPAHDR--ITEIGAVKI--RGGEVIGEFATLVDPGRP--IPPQIVTL 88
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT V +P + + G I HN RFD +R+ + P
Sbjct: 89 TGITTAMVTDAPRIESVLPAFLEFARGSILVAHNA-RFDMGFLRQNALRLHLDWPF---- 143
Query: 128 IDSLALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
SL+L T RR A +K+++LA F + + THR+LDD R +EV
Sbjct: 144 --SLSLCTVTMARRILPRDEAPTVKLSALADLFDVSVRPTHRALDDARATVEVF 195
>gi|110640430|ref|YP_668158.1| DNA polymerase III subunit epsilon [Escherichia coli 536]
gi|300990975|ref|ZP_07179425.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
gi|306813365|ref|ZP_07447558.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
gi|417288138|ref|ZP_12075424.1| DNA polymerase III, epsilon subunit [Escherichia coli TW07793]
gi|422376869|ref|ZP_16457116.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1]
gi|422379636|ref|ZP_16459825.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2]
gi|432379871|ref|ZP_19622836.1| DNA polymerase III subunit epsilon [Escherichia coli KTE15]
gi|432385597|ref|ZP_19628498.1| DNA polymerase III subunit epsilon [Escherichia coli KTE16]
gi|432439547|ref|ZP_19681911.1| DNA polymerase III subunit epsilon [Escherichia coli KTE189]
gi|432444670|ref|ZP_19686980.1| DNA polymerase III subunit epsilon [Escherichia coli KTE191]
gi|432469544|ref|ZP_19711599.1| DNA polymerase III subunit epsilon [Escherichia coli KTE206]
gi|432512409|ref|ZP_19749655.1| DNA polymerase III subunit epsilon [Escherichia coli KTE224]
gi|432609917|ref|ZP_19846092.1| DNA polymerase III subunit epsilon [Escherichia coli KTE72]
gi|432644620|ref|ZP_19880426.1| DNA polymerase III subunit epsilon [Escherichia coli KTE86]
gi|432654254|ref|ZP_19889975.1| DNA polymerase III subunit epsilon [Escherichia coli KTE93]
gi|432697518|ref|ZP_19932693.1| DNA polymerase III subunit epsilon [Escherichia coli KTE169]
gi|432711899|ref|ZP_19946952.1| DNA polymerase III subunit epsilon [Escherichia coli KTE8]
gi|432730942|ref|ZP_19965793.1| DNA polymerase III subunit epsilon [Escherichia coli KTE45]
gi|432744137|ref|ZP_19978845.1| DNA polymerase III subunit epsilon [Escherichia coli KTE43]
gi|432758010|ref|ZP_19992535.1| DNA polymerase III subunit epsilon [Escherichia coli KTE46]
gi|432800538|ref|ZP_20034529.1| DNA polymerase III subunit epsilon [Escherichia coli KTE84]
gi|432902511|ref|ZP_20112259.1| DNA polymerase III subunit epsilon [Escherichia coli KTE194]
gi|432941905|ref|ZP_20139403.1| DNA polymerase III subunit epsilon [Escherichia coli KTE183]
gi|432970348|ref|ZP_20159229.1| DNA polymerase III subunit epsilon [Escherichia coli KTE207]
gi|432983935|ref|ZP_20172676.1| DNA polymerase III subunit epsilon [Escherichia coli KTE215]
gi|433012386|ref|ZP_20200773.1| DNA polymerase III subunit epsilon [Escherichia coli KTE104]
gi|433021878|ref|ZP_20209914.1| DNA polymerase III subunit epsilon [Escherichia coli KTE106]
gi|433037137|ref|ZP_20224764.1| DNA polymerase III subunit epsilon [Escherichia coli KTE113]
gi|433076371|ref|ZP_20262949.1| DNA polymerase III subunit epsilon [Escherichia coli KTE131]
gi|433081117|ref|ZP_20267595.1| DNA polymerase III subunit epsilon [Escherichia coli KTE133]
gi|433099750|ref|ZP_20285870.1| DNA polymerase III subunit epsilon [Escherichia coli KTE145]
gi|433142710|ref|ZP_20327895.1| DNA polymerase III subunit epsilon [Escherichia coli KTE168]
gi|433186928|ref|ZP_20371067.1| DNA polymerase III subunit epsilon [Escherichia coli KTE88]
gi|433196782|ref|ZP_20380719.1| DNA polymerase III subunit epsilon [Escherichia coli KTE94]
gi|110342022|gb|ABG68259.1| DNA polymerase III, epsilon chain [Escherichia coli 536]
gi|300305641|gb|EFJ60161.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
gi|305854128|gb|EFM54567.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
gi|324009120|gb|EGB78339.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2]
gi|324011829|gb|EGB81048.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1]
gi|386248923|gb|EII95095.1| DNA polymerase III, epsilon subunit [Escherichia coli TW07793]
gi|430910430|gb|ELC31740.1| DNA polymerase III subunit epsilon [Escherichia coli KTE16]
gi|430912136|gb|ELC33384.1| DNA polymerase III subunit epsilon [Escherichia coli KTE15]
gi|430969753|gb|ELC86851.1| DNA polymerase III subunit epsilon [Escherichia coli KTE189]
gi|430976554|gb|ELC93418.1| DNA polymerase III subunit epsilon [Escherichia coli KTE191]
gi|431000258|gb|ELD16320.1| DNA polymerase III subunit epsilon [Escherichia coli KTE206]
gi|431045200|gb|ELD55438.1| DNA polymerase III subunit epsilon [Escherichia coli KTE224]
gi|431151893|gb|ELE52853.1| DNA polymerase III subunit epsilon [Escherichia coli KTE72]
gi|431184952|gb|ELE84691.1| DNA polymerase III subunit epsilon [Escherichia coli KTE86]
gi|431195856|gb|ELE94816.1| DNA polymerase III subunit epsilon [Escherichia coli KTE93]
gi|431247409|gb|ELF41639.1| DNA polymerase III subunit epsilon [Escherichia coli KTE169]
gi|431259924|gb|ELF52283.1| DNA polymerase III subunit epsilon [Escherichia coli KTE8]
gi|431278673|gb|ELF69650.1| DNA polymerase III subunit epsilon [Escherichia coli KTE45]
gi|431296214|gb|ELF85935.1| DNA polymerase III subunit epsilon [Escherichia coli KTE43]
gi|431312413|gb|ELG00415.1| DNA polymerase III subunit epsilon [Escherichia coli KTE46]
gi|431351434|gb|ELG38221.1| DNA polymerase III subunit epsilon [Escherichia coli KTE84]
gi|431438640|gb|ELH20014.1| DNA polymerase III subunit epsilon [Escherichia coli KTE194]
gi|431456506|gb|ELH36850.1| DNA polymerase III subunit epsilon [Escherichia coli KTE183]
gi|431486708|gb|ELH66355.1| DNA polymerase III subunit epsilon [Escherichia coli KTE207]
gi|431506969|gb|ELH85256.1| DNA polymerase III subunit epsilon [Escherichia coli KTE215]
gi|431536620|gb|ELI12783.1| DNA polymerase III subunit epsilon [Escherichia coli KTE104]
gi|431542428|gb|ELI17596.1| DNA polymerase III subunit epsilon [Escherichia coli KTE106]
gi|431556479|gb|ELI30257.1| DNA polymerase III subunit epsilon [Escherichia coli KTE113]
gi|431602844|gb|ELI72273.1| DNA polymerase III subunit epsilon [Escherichia coli KTE131]
gi|431606615|gb|ELI75990.1| DNA polymerase III subunit epsilon [Escherichia coli KTE133]
gi|431623679|gb|ELI92306.1| DNA polymerase III subunit epsilon [Escherichia coli KTE145]
gi|431667533|gb|ELJ34115.1| DNA polymerase III subunit epsilon [Escherichia coli KTE168]
gi|431710733|gb|ELJ75104.1| DNA polymerase III subunit epsilon [Escherichia coli KTE88]
gi|431726257|gb|ELJ90068.1| DNA polymerase III subunit epsilon [Escherichia coli KTE94]
Length = 246
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAT-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|432615012|ref|ZP_19851149.1| DNA polymerase III subunit epsilon [Escherichia coli KTE75]
gi|432858607|ref|ZP_20085010.1| DNA polymerase III subunit epsilon [Escherichia coli KTE146]
gi|432872806|ref|ZP_20092569.1| DNA polymerase III subunit epsilon [Escherichia coli KTE147]
gi|431158721|gb|ELE59319.1| DNA polymerase III subunit epsilon [Escherichia coli KTE75]
gi|431405474|gb|ELG88713.1| DNA polymerase III subunit epsilon [Escherichia coli KTE147]
gi|431408363|gb|ELG91549.1| DNA polymerase III subunit epsilon [Escherichia coli KTE146]
Length = 246
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
[Sanguibacter keddieii DSM 10542]
gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Sanguibacter keddieii DSM 10542]
Length = 611
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 47 NYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFD 106
++S+L+ P + V +G+T + + +P + D+A T+ +++ R+ HN RFD
Sbjct: 56 SWSSLLDPG----VDPGPVHVHGLTRERLAGAPQYQDVAGTLDELVRDRVLVAHNA-RFD 110
Query: 107 CARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLD 165
+ A ++ R + +LA L++R D+++A++A ++G+ Q + H + D
Sbjct: 111 WGFL-AAESDRARAPLSVDRRLCTLA-LSRRLDLPVSDLRLATVAAHWGVQQRRAHDAED 168
Query: 166 DVRMNLEVLKY 176
DVR+ +EVL++
Sbjct: 169 DVRVLVEVLRH 179
>gi|456389692|gb|EMF55087.1| exonuclease [Streptomyces bottropensis ATCC 25435]
Length = 331
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 47 NYSTLVRPA-DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRF 105
++ TLV P DP V +G+T D + +P F +IA L R+ HN + F
Sbjct: 55 HWYTLVNPERDPG-----PVWIHGLTSDVLEGAPLFREIAQEFSSRLADRVLVAHNAV-F 108
Query: 106 DCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSL 164
D + I +A AP + + ++A L++ G + K+ SLA +FG+ QQ H +L
Sbjct: 109 DWSMIAREYARAETEAPV-RQRLCTIA-LSKELGLPLPNHKLESLAAHFGVVQQRAHHAL 166
Query: 165 DDVRMNLEVLK 175
DD R+ E +
Sbjct: 167 DDARVLAEAFR 177
>gi|404444953|ref|ZP_11010102.1| DNA polymerase III subunit epsilon [Mycobacterium vaccae ATCC
25954]
gi|403653016|gb|EJZ08026.1| DNA polymerase III subunit epsilon [Mycobacterium vaccae ATCC
25954]
Length = 312
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGIT 71
DVET+ RPGQ I+ A+ + E YS L DP +G+T
Sbjct: 1 MVDVETS-GFRPGQA-RIVSVAALALSDDGNVEKSLYSLLDPGVDPG-----PTHVHGLT 53
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNI---LRFDCARIREAFAEIGRPAPEPKGTI 128
+ + PTF D+ + ++L GR HN+ F A AE+ P T+
Sbjct: 54 AEMLAGQPTFGDVVGDLCELLRGRTLVAHNVGFDYSFLTAEAEMVHAEL------PVDTV 107
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLK 175
L +R ++++ +LA ++G+ Q H +LDD + ++LK
Sbjct: 108 MCTVELARRLQLGLDNLRLETLAAHWGVTQMNPHDALDDAMVLAQILK 155
>gi|301050549|ref|ZP_07197422.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
gi|300297757|gb|EFJ54142.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
Length = 246
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|347525374|ref|YP_004832122.1| DinG family ATP-dependent helicase [Lactobacillus ruminis ATCC
27782]
gi|345284333|gb|AEN78186.1| ATP-dependent helicase, DinG family [Lactobacillus ruminis ATCC
27782]
Length = 968
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 12/151 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCN 68
A D+E T T P +++F + K+ ++ +STL+ P PE + +L+
Sbjct: 41 AVVDLEMT-GTNPNGSERLIQFSCVFTEGNKI--VNTFSTLINPLRKIPEDVQNLT---- 93
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
IT V ++PTF ++A T++ +L ++ HNI D + F IG P + +G I
Sbjct: 94 NITDKDVKNAPTFDEVAGTIYALLSDTVFVAHNI-ELDYRFLNSEFERIGFPKLDLEG-I 151
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQ 159
D++ L F A ++ LA ++G +
Sbjct: 152 DTVQLAQIAFPTLAS-YRLGDLAHFWGFKHK 181
>gi|423592479|ref|ZP_17568510.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD048]
gi|401229855|gb|EJR36364.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD048]
Length = 315
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 57 PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE 116
P+ I+SL+ GIT V +PT A++ L I HN FD ++
Sbjct: 55 PDRITSLT----GITNYRVSDAPTIAEVLPLFLAFLDTNIIVAHN-ASFDMRFLKSNVNM 109
Query: 117 IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKY 176
+G PEPK + L +++ + A + K+ +L G+ +H + DD V +
Sbjct: 110 LG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167
Query: 177 CATV 180
CA V
Sbjct: 168 CAAV 171
>gi|423367558|ref|ZP_17344990.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD142]
gi|401084108|gb|EJP92358.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD142]
Length = 315
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT A++ L I HN FD ++
Sbjct: 52 RPI-PSRITSLT----GITNYRVSDAPTIAEVLPLFLAFLDTNIIVAHN-ASFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLNSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA V
Sbjct: 164 VYQKCAAV 171
>gi|429105739|ref|ZP_19167608.1| DNA polymerase III epsilon subunit [Cronobacter malonaticus 681]
gi|426292462|emb|CCJ93721.1| DNA polymerase III epsilon subunit [Cronobacter malonaticus 681]
Length = 243
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFMV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + +++ P F D+ D D + G HN FD + F + R P+ +
Sbjct: 66 HGISDEFLLNKPVFGDVVDDFLDYIRGAELVIHNA-SFDIGFMDYEFGMLNRGIPKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|375139240|ref|YP_004999889.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium rhodesiae NBB3]
gi|359819861|gb|AEV72674.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium rhodesiae NBB3]
Length = 339
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 4 TQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSL 63
T+D + A DVET+ PG ++ A+ + E YS L DP
Sbjct: 20 TEDGAGWAVVDVETS-GFHPGHA-RVISIAALALGDDGNVEQSLYSLLNPGVDPG----- 72
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + + P F DI + D+L GR HN+ FD + + A AE+ A
Sbjct: 73 PTHVHGLTAEMLEGQPCFGDIVGDLIDLLRGRTLVAHNV-GFDYSFL-TAEAEM-VAAEL 129
Query: 124 PKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
P T LT+R ++++ +LA ++G+ Q + H +LDD + ++LK
Sbjct: 130 PIDTAMCTVELTRRLELGTENLRLETLAAHWGITQLKPHDALDDAMVLAQILK 182
>gi|432552249|ref|ZP_19788982.1| DNA polymerase III subunit epsilon [Escherichia coli KTE47]
gi|431087176|gb|ELD93175.1| DNA polymerase III subunit epsilon [Escherichia coli KTE47]
Length = 246
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAT-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|352683901|ref|YP_004895885.1| DNA polymerase III [Acidaminococcus intestini RyC-MR95]
gi|350278555|gb|AEQ21745.1| DNA polymerase III [Acidaminococcus intestini RyC-MR95]
Length = 212
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT R AI+E GA+ V + + T + P + +S GIT
Sbjct: 48 DIETT--GLDVARSAIIEIGAVHVRNGAVSG--RFQTFLTPEPYQSLSPFITNLTGITDS 103
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNI---LRFDCARI-REAFAEIGRPAPEPKGTID 129
+V +PTF +I + D L G GHN+ + F RI RE + P + K
Sbjct: 104 DLVGAPTFREILPRLRDFLGGYTLVGHNVNFDINFLYDRIYRETGEHLNNPYLDTKKLAK 163
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
++ + + +L +FG+ HR++DD + +VL
Sbjct: 164 TVVPGLSHY-------SLEALCKHFGIAGNHHRAVDDCELTEKVL 201
>gi|195938587|ref|ZP_03083969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
EC4024]
gi|217324145|ref|ZP_03440229.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
TW14588]
gi|416780728|ref|ZP_11877004.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
G5101]
gi|416792009|ref|ZP_11881926.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str.
493-89]
gi|416813900|ref|ZP_11891393.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
3256-97]
gi|416824594|ref|ZP_11896059.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
USDA 5905]
gi|432452964|ref|ZP_19695211.1| DNA polymerase III subunit epsilon [Escherichia coli KTE193]
gi|432944781|ref|ZP_20141186.1| DNA polymerase III subunit epsilon [Escherichia coli KTE196]
gi|433031619|ref|ZP_20219441.1| DNA polymerase III subunit epsilon [Escherichia coli KTE112]
gi|433041707|ref|ZP_20229244.1| DNA polymerase III subunit epsilon [Escherichia coli KTE117]
gi|452967197|ref|ZP_21965424.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
EC4009]
gi|217320366|gb|EEC28790.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
TW14588]
gi|320638235|gb|EFX07963.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
G5101]
gi|320643619|gb|EFX12763.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str.
493-89]
gi|320654630|gb|EFX22631.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660198|gb|EFX27708.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
USDA 5905]
gi|430975558|gb|ELC92453.1| DNA polymerase III subunit epsilon [Escherichia coli KTE193]
gi|431463797|gb|ELH43920.1| DNA polymerase III subunit epsilon [Escherichia coli KTE196]
gi|431560862|gb|ELI34368.1| DNA polymerase III subunit epsilon [Escherichia coli KTE117]
gi|431561097|gb|ELI34484.1| DNA polymerase III subunit epsilon [Escherichia coli KTE112]
Length = 246
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|191171395|ref|ZP_03032944.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
gi|222155035|ref|YP_002555174.1| DNA polymerase III subunit epsilon [Escherichia coli LF82]
gi|387615557|ref|YP_006118579.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str.
NRG 857C]
gi|416334129|ref|ZP_11671148.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327]
gi|419699139|ref|ZP_14226761.1| DNA polymerase III subunit epsilon [Escherichia coli SCI-07]
gi|433327038|ref|ZP_20403645.1| DNA polymerase III subunit epsilon [Escherichia coli J96]
gi|190908329|gb|EDV67919.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
gi|222032040|emb|CAP74779.1| DNA polymerase III subunit epsilon [Escherichia coli LF82]
gi|312944818|gb|ADR25645.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str.
NRG 857C]
gi|320197298|gb|EFW71914.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327]
gi|380349661|gb|EIA37927.1| DNA polymerase III subunit epsilon [Escherichia coli SCI-07]
gi|432345109|gb|ELL39631.1| DNA polymerase III subunit epsilon [Escherichia coli J96]
Length = 243
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAT-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Bermanella marisrubri]
gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
Length = 738
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
DVETT + R + E G + V ++ + + +L+ P P+ I+ R GI+
Sbjct: 577 DVETTGGRKEQHR--VTEVGMVKVLNGEIVD--EWQSLINPMRHIPQSIT----RLTGIS 628
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
+ V ++P F D+AD + + G ++ HN+ FD R F +GR PK
Sbjct: 629 NEMVSNAPVFDDVADEIAEFCAGSVFVAHNV-NFDYGFFRSEFERLGRRFHAPK------ 681
Query: 132 ALLTQRFGRRA----GDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLK 175
L T + R+ + L + + HR+LDD + V +
Sbjct: 682 -LCTVQMSRKYLPGHSSYSLGKLCAALDIDLENHHRALDDAKAAAHVFR 729
>gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS]
gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS]
gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
Length = 630
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 84/196 (42%), Gaps = 32/196 (16%)
Query: 14 DVETTVPTRPGQR-FAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCNGI 70
D+ETT G+R AI E GA+ V + E L +TLV P A P I SL+ GI
Sbjct: 34 DLETTGGRATGERPDAITEIGAVKV--RGGEVLGELATLVDPGRAIPPQIVSLT----GI 87
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V ++P + + G + HN FD +R A + P P
Sbjct: 88 TTAMVCAAPRIESVLPAFLEFARGSVLVAHNA-GFDIGFLRAAAEQCALTWPRPP----- 141
Query: 131 LALLTQRFGRR------AGDMKMASLATYF-GLGQQTHRSLDDVRMNLEVL--------- 174
L T + RR A +++++LA F THR+LDD R ++VL
Sbjct: 142 -VLCTVKLARRVLTRDEAPSVRLSALAQLFRAKTTPTHRALDDARATVDVLHGLIERIGN 200
Query: 175 KYCATVLFLESSLPDI 190
+ T L + LPD+
Sbjct: 201 QGVHTYTDLRAYLPDV 216
>gi|170021437|ref|YP_001726391.1| DNA polymerase III subunit epsilon [Escherichia coli ATCC 8739]
gi|253774763|ref|YP_003037594.1| DNA polymerase III subunit epsilon [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|297518674|ref|ZP_06937060.1| DNA polymerase III subunit epsilon [Escherichia coli OP50]
gi|300905642|ref|ZP_07123388.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
gi|300919145|ref|ZP_07135678.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
gi|300927906|ref|ZP_07143466.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
gi|301305771|ref|ZP_07211857.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
gi|386703408|ref|YP_006167255.1| DNA polymerase III, epsilon subunit-related 3-5 exonuclease
[Escherichia coli P12b]
gi|415866175|ref|ZP_11538829.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1]
gi|422784862|ref|ZP_16837601.1| DNA polymerase III [Escherichia coli H489]
gi|422791020|ref|ZP_16843723.1| DNA polymerase III [Escherichia coli TA007]
gi|432529511|ref|ZP_19766569.1| DNA polymerase III subunit epsilon [Escherichia coli KTE233]
gi|432532425|ref|ZP_19769432.1| DNA polymerase III subunit epsilon [Escherichia coli KTE234]
gi|432578924|ref|ZP_19815359.1| DNA polymerase III subunit epsilon [Escherichia coli KTE56]
gi|433128499|ref|ZP_20313985.1| DNA polymerase III subunit epsilon [Escherichia coli KTE163]
gi|433133401|ref|ZP_20318785.1| DNA polymerase III subunit epsilon [Escherichia coli KTE166]
gi|442596074|ref|ZP_21013900.1| DNA polymerase III epsilon subunit [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|169756365|gb|ACA79064.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 8739]
gi|253325807|gb|ACT30409.1| DNA polymerase III, epsilon subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|300402534|gb|EFJ86072.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
gi|300413743|gb|EFJ97053.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
gi|300464061|gb|EFK27554.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
gi|300838946|gb|EFK66706.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
gi|315253528|gb|EFU33496.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1]
gi|323963578|gb|EGB59135.1| DNA polymerase III [Escherichia coli H489]
gi|323972507|gb|EGB67713.1| DNA polymerase III [Escherichia coli TA007]
gi|383101576|gb|AFG39085.1| DNA polymerase III, epsilon subunit-related 3-5 exonuclease
[Escherichia coli P12b]
gi|431057849|gb|ELD67267.1| DNA polymerase III subunit epsilon [Escherichia coli KTE233]
gi|431064686|gb|ELD73548.1| DNA polymerase III subunit epsilon [Escherichia coli KTE234]
gi|431109252|gb|ELE13218.1| DNA polymerase III subunit epsilon [Escherichia coli KTE56]
gi|431652128|gb|ELJ19288.1| DNA polymerase III subunit epsilon [Escherichia coli KTE163]
gi|431663522|gb|ELJ30282.1| DNA polymerase III subunit epsilon [Escherichia coli KTE166]
gi|441655577|emb|CCP99813.1| DNA polymerase III epsilon subunit [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
Length = 246
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|26246159|ref|NP_752198.1| DNA polymerase III subunit epsilon [Escherichia coli CFT073]
gi|91209283|ref|YP_539269.1| DNA polymerase III subunit epsilon [Escherichia coli UTI89]
gi|117622497|ref|YP_851410.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
gi|227884794|ref|ZP_04002599.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
gi|237707792|ref|ZP_04538273.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
gi|300900029|ref|ZP_07118226.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
gi|300936085|ref|ZP_07151027.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
gi|300988192|ref|ZP_07178593.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
gi|331656205|ref|ZP_08357167.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
gi|331681596|ref|ZP_08382232.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
gi|386605819|ref|YP_006112119.1| DNA polymerase III subunit epsilon [Escherichia coli UM146]
gi|386627735|ref|YP_006147455.1| DNA polymerase III subunit epsilon [Escherichia coli str. 'clone D
i2']
gi|386632655|ref|YP_006152374.1| DNA polymerase III subunit epsilon [Escherichia coli str. 'clone D
i14']
gi|386637570|ref|YP_006104368.1| DNA polymerase III subunit epsilon [Escherichia coli ABU 83972]
gi|419913239|ref|ZP_14431680.1| DNA polymerase III subunit epsilon [Escherichia coli KD1]
gi|422356484|ref|ZP_16437167.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3]
gi|422365162|ref|ZP_16445665.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1]
gi|422368070|ref|ZP_16448489.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3]
gi|422838760|ref|ZP_16886732.1| DNA polymerase III subunit epsilon [Escherichia coli H397]
gi|422979249|ref|ZP_16977817.1| DNA polymerase III subunit epsilon [Escherichia coli TA124]
gi|432351843|ref|ZP_19595156.1| DNA polymerase III subunit epsilon [Escherichia coli KTE2]
gi|432356571|ref|ZP_19599818.1| DNA polymerase III subunit epsilon [Escherichia coli KTE4]
gi|432360994|ref|ZP_19604191.1| DNA polymerase III subunit epsilon [Escherichia coli KTE5]
gi|432390105|ref|ZP_19632970.1| DNA polymerase III subunit epsilon [Escherichia coli KTE21]
gi|432400290|ref|ZP_19643051.1| DNA polymerase III subunit epsilon [Escherichia coli KTE26]
gi|432410215|ref|ZP_19652901.1| DNA polymerase III subunit epsilon [Escherichia coli KTE39]
gi|432429321|ref|ZP_19671786.1| DNA polymerase III subunit epsilon [Escherichia coli KTE181]
gi|432432280|ref|ZP_19674711.1| DNA polymerase III subunit epsilon [Escherichia coli KTE187]
gi|432434762|ref|ZP_19677172.1| DNA polymerase III subunit epsilon [Escherichia coli KTE188]
gi|432454991|ref|ZP_19697202.1| DNA polymerase III subunit epsilon [Escherichia coli KTE201]
gi|432459150|ref|ZP_19701317.1| DNA polymerase III subunit epsilon [Escherichia coli KTE204]
gi|432464203|ref|ZP_19706315.1| DNA polymerase III subunit epsilon [Escherichia coli KTE205]
gi|432474207|ref|ZP_19716223.1| DNA polymerase III subunit epsilon [Escherichia coli KTE208]
gi|432492514|ref|ZP_19734358.1| DNA polymerase III subunit epsilon [Escherichia coli KTE213]
gi|432494040|ref|ZP_19735862.1| DNA polymerase III subunit epsilon [Escherichia coli KTE214]
gi|432510445|ref|ZP_19749305.1| DNA polymerase III subunit epsilon [Escherichia coli KTE220]
gi|432520859|ref|ZP_19758029.1| DNA polymerase III subunit epsilon [Escherichia coli KTE228]
gi|432522356|ref|ZP_19759500.1| DNA polymerase III subunit epsilon [Escherichia coli KTE230]
gi|432541032|ref|ZP_19777912.1| DNA polymerase III subunit epsilon [Escherichia coli KTE235]
gi|432541595|ref|ZP_19778456.1| DNA polymerase III subunit epsilon [Escherichia coli KTE236]
gi|432546933|ref|ZP_19783732.1| DNA polymerase III subunit epsilon [Escherichia coli KTE237]
gi|432567087|ref|ZP_19803616.1| DNA polymerase III subunit epsilon [Escherichia coli KTE53]
gi|432572235|ref|ZP_19808727.1| DNA polymerase III subunit epsilon [Escherichia coli KTE55]
gi|432582299|ref|ZP_19818712.1| DNA polymerase III subunit epsilon [Escherichia coli KTE57]
gi|432586540|ref|ZP_19822912.1| DNA polymerase III subunit epsilon [Escherichia coli KTE58]
gi|432591216|ref|ZP_19827548.1| DNA polymerase III subunit epsilon [Escherichia coli KTE60]
gi|432596110|ref|ZP_19832399.1| DNA polymerase III subunit epsilon [Escherichia coli KTE62]
gi|432600721|ref|ZP_19836977.1| DNA polymerase III subunit epsilon [Escherichia coli KTE66]
gi|432606078|ref|ZP_19842278.1| DNA polymerase III subunit epsilon [Escherichia coli KTE67]
gi|432620319|ref|ZP_19856367.1| DNA polymerase III subunit epsilon [Escherichia coli KTE76]
gi|432629744|ref|ZP_19865701.1| DNA polymerase III subunit epsilon [Escherichia coli KTE80]
gi|432639288|ref|ZP_19875137.1| DNA polymerase III subunit epsilon [Escherichia coli KTE83]
gi|432649582|ref|ZP_19885352.1| DNA polymerase III subunit epsilon [Escherichia coli KTE87]
gi|432664367|ref|ZP_19899968.1| DNA polymerase III subunit epsilon [Escherichia coli KTE116]
gi|432678627|ref|ZP_19914031.1| DNA polymerase III subunit epsilon [Escherichia coli KTE143]
gi|432717225|ref|ZP_19952228.1| DNA polymerase III subunit epsilon [Escherichia coli KTE9]
gi|432753038|ref|ZP_19987607.1| DNA polymerase III subunit epsilon [Escherichia coli KTE22]
gi|432773366|ref|ZP_20007667.1| DNA polymerase III subunit epsilon [Escherichia coli KTE54]
gi|432777094|ref|ZP_20011349.1| DNA polymerase III subunit epsilon [Escherichia coli KTE59]
gi|432782101|ref|ZP_20016287.1| DNA polymerase III subunit epsilon [Escherichia coli KTE63]
gi|432785888|ref|ZP_20020056.1| DNA polymerase III subunit epsilon [Escherichia coli KTE65]
gi|432791440|ref|ZP_20025534.1| DNA polymerase III subunit epsilon [Escherichia coli KTE78]
gi|432797407|ref|ZP_20031435.1| DNA polymerase III subunit epsilon [Escherichia coli KTE79]
gi|432813720|ref|ZP_20047531.1| DNA polymerase III subunit epsilon [Escherichia coli KTE115]
gi|432819561|ref|ZP_20053275.1| DNA polymerase III subunit epsilon [Escherichia coli KTE118]
gi|432825689|ref|ZP_20059346.1| DNA polymerase III subunit epsilon [Escherichia coli KTE123]
gi|432837770|ref|ZP_20071265.1| DNA polymerase III subunit epsilon [Escherichia coli KTE140]
gi|432842473|ref|ZP_20075900.1| DNA polymerase III subunit epsilon [Escherichia coli KTE141]
gi|432857040|ref|ZP_20084270.1| DNA polymerase III subunit epsilon [Escherichia coli KTE144]
gi|432883942|ref|ZP_20099104.1| DNA polymerase III subunit epsilon [Escherichia coli KTE158]
gi|432896933|ref|ZP_20107976.1| DNA polymerase III subunit epsilon [Escherichia coli KTE192]
gi|432909767|ref|ZP_20117040.1| DNA polymerase III subunit epsilon [Escherichia coli KTE190]
gi|432976917|ref|ZP_20165744.1| DNA polymerase III subunit epsilon [Escherichia coli KTE209]
gi|432993970|ref|ZP_20182590.1| DNA polymerase III subunit epsilon [Escherichia coli KTE218]
gi|432998389|ref|ZP_20186938.1| DNA polymerase III subunit epsilon [Escherichia coli KTE223]
gi|433003753|ref|ZP_20192191.1| DNA polymerase III subunit epsilon [Escherichia coli KTE227]
gi|433010959|ref|ZP_20199364.1| DNA polymerase III subunit epsilon [Escherichia coli KTE229]
gi|433017184|ref|ZP_20205459.1| DNA polymerase III subunit epsilon [Escherichia coli KTE105]
gi|433027231|ref|ZP_20215109.1| DNA polymerase III subunit epsilon [Escherichia coli KTE109]
gi|433051425|ref|ZP_20238673.1| DNA polymerase III subunit epsilon [Escherichia coli KTE122]
gi|433056541|ref|ZP_20243639.1| DNA polymerase III subunit epsilon [Escherichia coli KTE124]
gi|433066331|ref|ZP_20253185.1| DNA polymerase III subunit epsilon [Escherichia coli KTE128]
gi|433071124|ref|ZP_20257839.1| DNA polymerase III subunit epsilon [Escherichia coli KTE129]
gi|433085865|ref|ZP_20272273.1| DNA polymerase III subunit epsilon [Escherichia coli KTE137]
gi|433114150|ref|ZP_20299973.1| DNA polymerase III subunit epsilon [Escherichia coli KTE153]
gi|433118690|ref|ZP_20304411.1| DNA polymerase III subunit epsilon [Escherichia coli KTE157]
gi|433123812|ref|ZP_20309409.1| DNA polymerase III subunit epsilon [Escherichia coli KTE160]
gi|433137882|ref|ZP_20323173.1| DNA polymerase III subunit epsilon [Escherichia coli KTE167]
gi|433147632|ref|ZP_20332716.1| DNA polymerase III subunit epsilon [Escherichia coli KTE174]
gi|433152347|ref|ZP_20337320.1| DNA polymerase III subunit epsilon [Escherichia coli KTE176]
gi|433157148|ref|ZP_20342030.1| DNA polymerase III subunit epsilon [Escherichia coli KTE177]
gi|433161993|ref|ZP_20346762.1| DNA polymerase III subunit epsilon [Escherichia coli KTE179]
gi|433166929|ref|ZP_20351614.1| DNA polymerase III subunit epsilon [Escherichia coli KTE180]
gi|433176571|ref|ZP_20361050.1| DNA polymerase III subunit epsilon [Escherichia coli KTE82]
gi|433181655|ref|ZP_20365964.1| DNA polymerase III subunit epsilon [Escherichia coli KTE85]
gi|433201651|ref|ZP_20385467.1| DNA polymerase III subunit epsilon [Escherichia coli KTE95]
gi|433206383|ref|ZP_20390090.1| DNA polymerase III subunit epsilon [Escherichia coli KTE97]
gi|433211132|ref|ZP_20394754.1| DNA polymerase III subunit epsilon [Escherichia coli KTE99]
gi|26106556|gb|AAN78742.1|AE016755_242 DNA polymerase III, epsilon chain [Escherichia coli CFT073]
gi|91070857|gb|ABE05738.1| DNA polymerase III epsilon chain [Escherichia coli UTI89]
gi|115511621|gb|ABI99695.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
gi|226899002|gb|EEH85261.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
gi|227838235|gb|EEJ48701.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
gi|300356434|gb|EFJ72304.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
gi|300407506|gb|EFJ91044.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
gi|300458760|gb|EFK22253.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
gi|307552062|gb|ADN44837.1| DNA polymerase III, epsilon chain [Escherichia coli ABU 83972]
gi|307628303|gb|ADN72607.1| DNA polymerase III subunit epsilon [Escherichia coli UM146]
gi|315289701|gb|EFU49094.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3]
gi|315292140|gb|EFU51492.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1]
gi|315300178|gb|EFU59415.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3]
gi|331054453|gb|EGI26462.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
gi|331081170|gb|EGI52332.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
gi|355418634|gb|AER82831.1| DNA polymerase III subunit epsilon [Escherichia coli str. 'clone D
i2']
gi|355423554|gb|AER87750.1| DNA polymerase III subunit epsilon [Escherichia coli str. 'clone D
i14']
gi|371592316|gb|EHN81226.1| DNA polymerase III subunit epsilon [Escherichia coli TA124]
gi|371612114|gb|EHO00631.1| DNA polymerase III subunit epsilon [Escherichia coli H397]
gi|388389943|gb|EIL51451.1| DNA polymerase III subunit epsilon [Escherichia coli KD1]
gi|430879381|gb|ELC02712.1| DNA polymerase III subunit epsilon [Escherichia coli KTE4]
gi|430881422|gb|ELC04676.1| DNA polymerase III subunit epsilon [Escherichia coli KTE2]
gi|430891229|gb|ELC13765.1| DNA polymerase III subunit epsilon [Escherichia coli KTE5]
gi|430922848|gb|ELC43586.1| DNA polymerase III subunit epsilon [Escherichia coli KTE21]
gi|430930405|gb|ELC50906.1| DNA polymerase III subunit epsilon [Escherichia coli KTE26]
gi|430938796|gb|ELC59026.1| DNA polymerase III subunit epsilon [Escherichia coli KTE39]
gi|430948244|gb|ELC67923.1| DNA polymerase III subunit epsilon [Escherichia coli KTE181]
gi|430953192|gb|ELC72100.1| DNA polymerase III subunit epsilon [Escherichia coli KTE187]
gi|430967989|gb|ELC85229.1| DNA polymerase III subunit epsilon [Escherichia coli KTE188]
gi|430986272|gb|ELD02844.1| DNA polymerase III subunit epsilon [Escherichia coli KTE201]
gi|430993130|gb|ELD09487.1| DNA polymerase III subunit epsilon [Escherichia coli KTE204]
gi|430997761|gb|ELD14016.1| DNA polymerase III subunit epsilon [Escherichia coli KTE205]
gi|431011233|gb|ELD25316.1| DNA polymerase III subunit epsilon [Escherichia coli KTE208]
gi|431013981|gb|ELD27696.1| DNA polymerase III subunit epsilon [Escherichia coli KTE213]
gi|431029814|gb|ELD42845.1| DNA polymerase III subunit epsilon [Escherichia coli KTE214]
gi|431032588|gb|ELD45298.1| DNA polymerase III subunit epsilon [Escherichia coli KTE220]
gi|431045971|gb|ELD56100.1| DNA polymerase III subunit epsilon [Escherichia coli KTE228]
gi|431055519|gb|ELD65064.1| DNA polymerase III subunit epsilon [Escherichia coli KTE230]
gi|431065187|gb|ELD73964.1| DNA polymerase III subunit epsilon [Escherichia coli KTE235]
gi|431078112|gb|ELD85170.1| DNA polymerase III subunit epsilon [Escherichia coli KTE236]
gi|431086237|gb|ELD92265.1| DNA polymerase III subunit epsilon [Escherichia coli KTE237]
gi|431103381|gb|ELE08033.1| DNA polymerase III subunit epsilon [Escherichia coli KTE53]
gi|431111329|gb|ELE15233.1| DNA polymerase III subunit epsilon [Escherichia coli KTE55]
gi|431121710|gb|ELE24589.1| DNA polymerase III subunit epsilon [Escherichia coli KTE57]
gi|431123820|gb|ELE26474.1| DNA polymerase III subunit epsilon [Escherichia coli KTE58]
gi|431133575|gb|ELE35555.1| DNA polymerase III subunit epsilon [Escherichia coli KTE60]
gi|431133777|gb|ELE35743.1| DNA polymerase III subunit epsilon [Escherichia coli KTE62]
gi|431142346|gb|ELE44096.1| DNA polymerase III subunit epsilon [Escherichia coli KTE67]
gi|431144760|gb|ELE46454.1| DNA polymerase III subunit epsilon [Escherichia coli KTE66]
gi|431163240|gb|ELE63674.1| DNA polymerase III subunit epsilon [Escherichia coli KTE76]
gi|431175087|gb|ELE75108.1| DNA polymerase III subunit epsilon [Escherichia coli KTE80]
gi|431185805|gb|ELE85498.1| DNA polymerase III subunit epsilon [Escherichia coli KTE83]
gi|431194868|gb|ELE94083.1| DNA polymerase III subunit epsilon [Escherichia coli KTE87]
gi|431205231|gb|ELF03730.1| DNA polymerase III subunit epsilon [Escherichia coli KTE116]
gi|431225271|gb|ELF22475.1| DNA polymerase III subunit epsilon [Escherichia coli KTE143]
gi|431267225|gb|ELF58745.1| DNA polymerase III subunit epsilon [Escherichia coli KTE9]
gi|431305819|gb|ELF94136.1| DNA polymerase III subunit epsilon [Escherichia coli KTE22]
gi|431321283|gb|ELG08894.1| DNA polymerase III subunit epsilon [Escherichia coli KTE54]
gi|431331520|gb|ELG18773.1| DNA polymerase III subunit epsilon [Escherichia coli KTE59]
gi|431331813|gb|ELG19056.1| DNA polymerase III subunit epsilon [Escherichia coli KTE63]
gi|431341819|gb|ELG28815.1| DNA polymerase III subunit epsilon [Escherichia coli KTE65]
gi|431342236|gb|ELG29215.1| DNA polymerase III subunit epsilon [Escherichia coli KTE78]
gi|431345627|gb|ELG32541.1| DNA polymerase III subunit epsilon [Escherichia coli KTE79]
gi|431368739|gb|ELG54970.1| DNA polymerase III subunit epsilon [Escherichia coli KTE115]
gi|431370563|gb|ELG56356.1| DNA polymerase III subunit epsilon [Escherichia coli KTE118]
gi|431375073|gb|ELG60417.1| DNA polymerase III subunit epsilon [Escherichia coli KTE123]
gi|431392236|gb|ELG75836.1| DNA polymerase III subunit epsilon [Escherichia coli KTE140]
gi|431394740|gb|ELG78263.1| DNA polymerase III subunit epsilon [Escherichia coli KTE144]
gi|431397752|gb|ELG81186.1| DNA polymerase III subunit epsilon [Escherichia coli KTE141]
gi|431420709|gb|ELH02986.1| DNA polymerase III subunit epsilon [Escherichia coli KTE158]
gi|431430125|gb|ELH11958.1| DNA polymerase III subunit epsilon [Escherichia coli KTE192]
gi|431448817|gb|ELH29530.1| DNA polymerase III subunit epsilon [Escherichia coli KTE190]
gi|431483875|gb|ELH63564.1| DNA polymerase III subunit epsilon [Escherichia coli KTE209]
gi|431510753|gb|ELH88995.1| DNA polymerase III subunit epsilon [Escherichia coli KTE218]
gi|431515657|gb|ELH93474.1| DNA polymerase III subunit epsilon [Escherichia coli KTE223]
gi|431517074|gb|ELH94596.1| DNA polymerase III subunit epsilon [Escherichia coli KTE227]
gi|431519171|gb|ELH96623.1| DNA polymerase III subunit epsilon [Escherichia coli KTE229]
gi|431537891|gb|ELI14000.1| DNA polymerase III subunit epsilon [Escherichia coli KTE105]
gi|431546653|gb|ELI21045.1| DNA polymerase III subunit epsilon [Escherichia coli KTE109]
gi|431575095|gb|ELI47843.1| DNA polymerase III subunit epsilon [Escherichia coli KTE124]
gi|431576274|gb|ELI48966.1| DNA polymerase III subunit epsilon [Escherichia coli KTE122]
gi|431592896|gb|ELI63464.1| DNA polymerase III subunit epsilon [Escherichia coli KTE128]
gi|431595441|gb|ELI65439.1| DNA polymerase III subunit epsilon [Escherichia coli KTE129]
gi|431610549|gb|ELI79838.1| DNA polymerase III subunit epsilon [Escherichia coli KTE137]
gi|431637463|gb|ELJ05525.1| DNA polymerase III subunit epsilon [Escherichia coli KTE153]
gi|431650301|gb|ELJ17636.1| DNA polymerase III subunit epsilon [Escherichia coli KTE157]
gi|431650748|gb|ELJ18061.1| DNA polymerase III subunit epsilon [Escherichia coli KTE160]
gi|431665649|gb|ELJ32365.1| DNA polymerase III subunit epsilon [Escherichia coli KTE167]
gi|431678858|gb|ELJ44778.1| DNA polymerase III subunit epsilon [Escherichia coli KTE176]
gi|431678888|gb|ELJ44807.1| DNA polymerase III subunit epsilon [Escherichia coli KTE174]
gi|431683040|gb|ELJ48683.1| DNA polymerase III subunit epsilon [Escherichia coli KTE177]
gi|431693012|gb|ELJ58432.1| DNA polymerase III subunit epsilon [Escherichia coli KTE179]
gi|431694938|gb|ELJ60280.1| DNA polymerase III subunit epsilon [Escherichia coli KTE180]
gi|431711489|gb|ELJ75808.1| DNA polymerase III subunit epsilon [Escherichia coli KTE82]
gi|431712586|gb|ELJ76875.1| DNA polymerase III subunit epsilon [Escherichia coli KTE85]
gi|431726890|gb|ELJ90655.1| DNA polymerase III subunit epsilon [Escherichia coli KTE95]
gi|431733796|gb|ELJ97202.1| DNA polymerase III subunit epsilon [Escherichia coli KTE97]
gi|431736426|gb|ELJ99753.1| DNA polymerase III subunit epsilon [Escherichia coli KTE99]
Length = 246
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
Length = 392
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT + R I E G + V P + +++TLV P P I + G
Sbjct: 15 IVFVDLETTGGSVGDHR--ITEVGVVEVGPNGVS---SWTTLVDPGQP--IPPFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT D V +PTF IA +F L G+++ HN FD +R F G
Sbjct: 68 ITNDMVRGAPTFEAIAADLFARLDGKLFIAHNA-SFDRGFLRSEFQRAG 115
>gi|300949353|ref|ZP_07163365.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
gi|300958303|ref|ZP_07170446.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
gi|301029642|ref|ZP_07192704.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
gi|301645470|ref|ZP_07245407.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
gi|331640665|ref|ZP_08341812.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
gi|386279256|ref|ZP_10056942.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B]
gi|386596899|ref|YP_006093299.1| DNA polymerase III subunit epsilon [Escherichia coli DH1]
gi|404373562|ref|ZP_10978807.1| DNA polymerase III subunit epsilon [Escherichia sp. 1_1_43]
gi|418959661|ref|ZP_13511558.1| DNA polymerase III, epsilon subunit [Escherichia coli J53]
gi|419942158|ref|ZP_14458784.1| DNA polymerase III subunit epsilon [Escherichia coli 75]
gi|422816226|ref|ZP_16864441.1| DNA polymerase III subunit epsilon [Escherichia coli M919]
gi|423700992|ref|ZP_17675451.1| DNA polymerase III subunit epsilon [Escherichia coli H730]
gi|432368203|ref|ZP_19611310.1| DNA polymerase III subunit epsilon [Escherichia coli KTE10]
gi|432415163|ref|ZP_19657797.1| DNA polymerase III subunit epsilon [Escherichia coli KTE44]
gi|432483854|ref|ZP_19725782.1| DNA polymerase III subunit epsilon [Escherichia coli KTE212]
gi|432562132|ref|ZP_19798764.1| DNA polymerase III subunit epsilon [Escherichia coli KTE51]
gi|432625770|ref|ZP_19861758.1| DNA polymerase III subunit epsilon [Escherichia coli KTE77]
gi|432635529|ref|ZP_19871419.1| DNA polymerase III subunit epsilon [Escherichia coli KTE81]
gi|432659477|ref|ZP_19895142.1| DNA polymerase III subunit epsilon [Escherichia coli KTE111]
gi|432669034|ref|ZP_19904587.1| DNA polymerase III subunit epsilon [Escherichia coli KTE119]
gi|432684091|ref|ZP_19919413.1| DNA polymerase III subunit epsilon [Escherichia coli KTE156]
gi|432690095|ref|ZP_19925345.1| DNA polymerase III subunit epsilon [Escherichia coli KTE161]
gi|432702754|ref|ZP_19937885.1| DNA polymerase III subunit epsilon [Escherichia coli KTE171]
gi|432735674|ref|ZP_19970466.1| DNA polymerase III subunit epsilon [Escherichia coli KTE42]
gi|432879491|ref|ZP_20096493.1| DNA polymerase III subunit epsilon [Escherichia coli KTE154]
gi|432952970|ref|ZP_20145611.1| DNA polymerase III subunit epsilon [Escherichia coli KTE197]
gi|433046261|ref|ZP_20233703.1| DNA polymerase III subunit epsilon [Escherichia coli KTE120]
gi|433171977|ref|ZP_20356546.1| DNA polymerase III subunit epsilon [Escherichia coli KTE232]
gi|1552785|gb|AAB08637.1| DNA polymerase III epsilon chain [Escherichia coli]
gi|260450588|gb|ACX41010.1| DNA polymerase III, epsilon subunit [Escherichia coli DH1]
gi|299877469|gb|EFI85680.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
gi|300315009|gb|EFJ64793.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
gi|300451236|gb|EFK14856.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
gi|301076259|gb|EFK91065.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
gi|331040039|gb|EGI12247.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
gi|384377353|gb|EIE35247.1| DNA polymerase III, epsilon subunit [Escherichia coli J53]
gi|385540301|gb|EIF87123.1| DNA polymerase III subunit epsilon [Escherichia coli M919]
gi|385713478|gb|EIG50410.1| DNA polymerase III subunit epsilon [Escherichia coli H730]
gi|386123607|gb|EIG72198.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B]
gi|388398539|gb|EIL59422.1| DNA polymerase III subunit epsilon [Escherichia coli 75]
gi|404292973|gb|EJZ49746.1| DNA polymerase III subunit epsilon [Escherichia sp. 1_1_43]
gi|430889376|gb|ELC12042.1| DNA polymerase III subunit epsilon [Escherichia coli KTE10]
gi|430944346|gb|ELC64443.1| DNA polymerase III subunit epsilon [Escherichia coli KTE44]
gi|431019507|gb|ELD32903.1| DNA polymerase III subunit epsilon [Escherichia coli KTE212]
gi|431100297|gb|ELE05301.1| DNA polymerase III subunit epsilon [Escherichia coli KTE51]
gi|431165668|gb|ELE66000.1| DNA polymerase III subunit epsilon [Escherichia coli KTE77]
gi|431174795|gb|ELE74831.1| DNA polymerase III subunit epsilon [Escherichia coli KTE81]
gi|431204299|gb|ELF02872.1| DNA polymerase III subunit epsilon [Escherichia coli KTE111]
gi|431214310|gb|ELF12134.1| DNA polymerase III subunit epsilon [Escherichia coli KTE119]
gi|431225637|gb|ELF22831.1| DNA polymerase III subunit epsilon [Escherichia coli KTE156]
gi|431231729|gb|ELF27413.1| DNA polymerase III subunit epsilon [Escherichia coli KTE161]
gi|431247738|gb|ELF41952.1| DNA polymerase III subunit epsilon [Escherichia coli KTE171]
gi|431287945|gb|ELF78731.1| DNA polymerase III subunit epsilon [Escherichia coli KTE42]
gi|431414265|gb|ELG97008.1| DNA polymerase III subunit epsilon [Escherichia coli KTE154]
gi|431472348|gb|ELH52238.1| DNA polymerase III subunit epsilon [Escherichia coli KTE197]
gi|431573773|gb|ELI46568.1| DNA polymerase III subunit epsilon [Escherichia coli KTE120]
gi|431696903|gb|ELJ62053.1| DNA polymerase III subunit epsilon [Escherichia coli KTE232]
Length = 246
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|417284427|ref|ZP_12071722.1| DNA polymerase III, epsilon subunit [Escherichia coli 3003]
gi|386242636|gb|EII84371.1| DNA polymerase III, epsilon subunit [Escherichia coli 3003]
Length = 246
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAT-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|336114205|ref|YP_004568972.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
2-6]
gi|335367635|gb|AEH53586.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
2-6]
Length = 930
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 123/283 (43%), Gaps = 46/283 (16%)
Query: 14 DVETTVPT-RPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP--ELISSLSVRCNGI 70
D+ETT + + G R I++F A++V ++++ +++ V P P IS L+ NG+
Sbjct: 8 DLETTGNSAKKGDR--IIQFSAVVVEGREIKT--QFTSFVNPEKPVPPFISELTGIDNGM 63
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
+A P F++IA + +IL G I+ HN+L FD +++ G P P ++D
Sbjct: 64 LEEA----PAFSEIAPRIMEILEGSIFVAHNVL-FDLPFLQQELKAAGFP-PFRGPSLD- 116
Query: 131 LALLTQRFGRRA----GDMKMASLATYFGLGQQT-HRSLDD----VRMNLEVLKYCAT-- 179
T F R A K+ LA L + HR+ D ++ L ++ CA+
Sbjct: 117 ----TVEFSRIAFPTLSSYKLGDLADSLSLYHERPHRADSDAFVTAKLLLACMEKCASLP 172
Query: 180 VLFLESSLPDIFTVNS---WVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNAS 236
V+ LE +P +++ S + + R + + P + +
Sbjct: 173 VVTLEQLVPLSYSLKSDLAGIFEDILEEKRRHIEHLPPDMEVYRGIALKR-------KSL 225
Query: 237 PPDQGKEEIHPIFSLVTQGTAEVDSVLAVTTAD---QPNPFDM 276
PPD G EI Q AE +S A + A +P F+M
Sbjct: 226 PPDDGSREI----GRYPQDAAEKESWFAASGARMEARPAQFEM 264
>gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC
BAA-1498]
Length = 235
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 15/217 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNGI 70
FD ETT + R I+E G I + + L H Y + P D +I V +G+
Sbjct: 6 FDTETTGLNKESDR--IIEIGCIEMINRYLTGRRFHVY---LNPQDV-IIPDEVVAIHGL 59
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T + + F DI D + D + HN FD + + +P ID+
Sbjct: 60 TNERLKDEKKFDDIVDALLDFIDDATIVAHN-ANFDIGFLNAELERVNKPLINSDNVIDT 118
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDI 190
L++ +RF G + L FG+ +HR L ++ E+L + L I
Sbjct: 119 LSIARRRFP--MGPNSLDVLCKRFGI-DNSHRVLHGALLDAEIL--ADVYIELIGGKQGI 173
Query: 191 FTVNSWVSPNA-TTRSRSNAKSSPEGTSQNLSTPSSK 226
F+ +++ S + + NA + + SQ L SK
Sbjct: 174 FSFDNYESCDVMNVQDNKNAFYTIKTRSQALPQRLSK 210
>gi|297817898|ref|XP_002876832.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322670|gb|EFH53091.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 386
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 34/193 (17%)
Query: 82 ADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR 141
A++ VF+IL+G+IW G++ + + ++ F P K ID+ + F R
Sbjct: 41 ANVYSRVFEILNGKIWMGYDK---NLSDLKNLFNANFHACPIAKYEIDTTKWFAENFDGR 97
Query: 142 AGDMKMASLATYFGL------GQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNS 195
+M + ++ YF L Q +++ + D ++++V+K +F
Sbjct: 98 IDNMSLEGVSDYFKLDVEKYEKQSSYKVVRDCHLHIQVIK--------------MFPHGD 143
Query: 196 WVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPDQGKEEIHPIF--SLVT 253
W PN T + ++ E SQ T +K FE K E+ F SLV
Sbjct: 144 WHCPNCTCKF---CRAVVEDVSQ---TVGAKCLFEGVKKYVGV---KHELEARFSWSLVH 194
Query: 254 QGTAEVDSVLAVT 266
+ + D +L T
Sbjct: 195 RECTDSDFILRWT 207
>gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 187
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFGV 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|170683943|ref|YP_001742338.1| DNA polymerase III subunit epsilon [Escherichia coli SMS-3-5]
gi|331651120|ref|ZP_08352145.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
gi|331671744|ref|ZP_08372540.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
gi|384541782|ref|YP_005725843.1| DNA polymerase III subunit epsilon [Shigella flexneri 2002017]
gi|418042307|ref|ZP_12680507.1| DNA polymerase III, epsilon subunit [Escherichia coli W26]
gi|422808025|ref|ZP_16856453.1| DNA polymerase III [Escherichia fergusonii B253]
gi|422831825|ref|ZP_16879959.1| DNA polymerase III subunit epsilon [Escherichia coli B093]
gi|422835093|ref|ZP_16883151.1| DNA polymerase III subunit epsilon [Escherichia coli E101]
gi|424815121|ref|ZP_18240272.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227]
gi|432479572|ref|ZP_19721537.1| DNA polymerase III subunit epsilon [Escherichia coli KTE210]
gi|170521661|gb|ACB19839.1| DNA polymerase III, epsilon subunit [Escherichia coli SMS-3-5]
gi|281599565|gb|ADA72549.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2002017]
gi|324111223|gb|EGC05206.1| DNA polymerase III [Escherichia fergusonii B253]
gi|325496141|gb|EGC94000.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227]
gi|331050861|gb|EGI22913.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
gi|331070733|gb|EGI42092.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
gi|371613419|gb|EHO01918.1| DNA polymerase III subunit epsilon [Escherichia coli E101]
gi|371616094|gb|EHO04466.1| DNA polymerase III subunit epsilon [Escherichia coli B093]
gi|383474775|gb|EID66754.1| DNA polymerase III, epsilon subunit [Escherichia coli W26]
gi|431010589|gb|ELD24933.1| DNA polymerase III subunit epsilon [Escherichia coli KTE210]
Length = 246
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|15799891|ref|NP_285903.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
EDL933]
gi|15829465|ref|NP_308238.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
Sakai]
gi|82775601|ref|YP_401948.1| DNA polymerase III subunit epsilon [Shigella dysenteriae Sd197]
gi|168750163|ref|ZP_02775185.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4113]
gi|168757208|ref|ZP_02782215.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4401]
gi|168763423|ref|ZP_02788430.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4501]
gi|168776181|ref|ZP_02801188.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4196]
gi|168782940|ref|ZP_02807947.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4076]
gi|168789658|ref|ZP_02814665.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC869]
gi|168800383|ref|ZP_02825390.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC508]
gi|189403362|ref|ZP_02794985.2| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4486]
gi|208809432|ref|ZP_03251769.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4206]
gi|208813334|ref|ZP_03254663.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4045]
gi|208818379|ref|ZP_03258699.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4042]
gi|209400894|ref|YP_002268818.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
EC4115]
gi|254791342|ref|YP_003076179.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
TW14359]
gi|261223754|ref|ZP_05938035.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255836|ref|ZP_05948369.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
FRIK966]
gi|291281032|ref|YP_003497850.1| DNA polymerase III epsilon subunit [Escherichia coli O55:H7 str.
CB9615]
gi|293413470|ref|ZP_06656119.1| DNA polymerase III [Escherichia coli B185]
gi|309787110|ref|ZP_07681722.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
gi|387505137|ref|YP_006157393.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
RM12579]
gi|387880768|ref|YP_006311070.1| DNA polymerase III subunit epsilon [Escherichia coli Xuzhou21]
gi|416314814|ref|ZP_11659001.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
1044]
gi|416318908|ref|ZP_11661460.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
EC1212]
gi|416328202|ref|ZP_11667992.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
1125]
gi|416801354|ref|ZP_11885523.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H
2687]
gi|416834537|ref|ZP_11900969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
LSU-61]
gi|419045014|ref|ZP_13591970.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3A]
gi|419049878|ref|ZP_13596789.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3B]
gi|419059609|ref|ZP_13606408.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3C]
gi|419060418|ref|ZP_13607205.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3D]
gi|419066252|ref|ZP_13612941.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3E]
gi|419072875|ref|ZP_13618454.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3F]
gi|419078836|ref|ZP_13624320.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4A]
gi|419090073|ref|ZP_13635405.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4B]
gi|419091963|ref|ZP_13637264.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4C]
gi|419096119|ref|ZP_13641364.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4D]
gi|419101773|ref|ZP_13646941.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4E]
gi|419107235|ref|ZP_13652345.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4F]
gi|419113033|ref|ZP_13658068.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5A]
gi|419118541|ref|ZP_13663528.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5B]
gi|419124184|ref|ZP_13669093.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5C]
gi|419129779|ref|ZP_13674635.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5D]
gi|419134568|ref|ZP_13679377.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5E]
gi|420267484|ref|ZP_14769894.1| DNA polymerase III, epsilon subunit [Escherichia coli PA22]
gi|420273184|ref|ZP_14775518.1| DNA polymerase III, epsilon subunit [Escherichia coli PA40]
gi|420280342|ref|ZP_14782594.1| DNA polymerase III, epsilon subunit [Escherichia coli TW06591]
gi|420284770|ref|ZP_14786989.1| DNA polymerase III, epsilon subunit [Escherichia coli TW10246]
gi|420290235|ref|ZP_14792403.1| DNA polymerase III, epsilon subunit [Escherichia coli TW11039]
gi|420295955|ref|ZP_14798052.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09109]
gi|420301913|ref|ZP_14803947.1| DNA polymerase III, epsilon subunit [Escherichia coli TW10119]
gi|420307640|ref|ZP_14809614.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1738]
gi|420313118|ref|ZP_14815032.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1734]
gi|421810359|ref|ZP_16246178.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0416]
gi|421816431|ref|ZP_16252003.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0821]
gi|421821826|ref|ZP_16257270.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK920]
gi|421828578|ref|ZP_16263909.1| DNA polymerase III, epsilon subunit [Escherichia coli PA7]
gi|423652611|ref|ZP_17627981.1| DNA polymerase III, epsilon subunit [Escherichia coli PA31]
gi|424074980|ref|ZP_17812366.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA505]
gi|424081229|ref|ZP_17818130.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA517]
gi|424087905|ref|ZP_17824200.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1996]
gi|424094117|ref|ZP_17829922.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1985]
gi|424107354|ref|ZP_17841969.1| DNA polymerase III, epsilon subunit [Escherichia coli 93-001]
gi|424113328|ref|ZP_17847520.1| DNA polymerase III, epsilon subunit [Escherichia coli PA3]
gi|424119455|ref|ZP_17853208.1| DNA polymerase III, epsilon subunit [Escherichia coli PA5]
gi|424125672|ref|ZP_17858908.1| DNA polymerase III, epsilon subunit [Escherichia coli PA9]
gi|424131680|ref|ZP_17864530.1| DNA polymerase III, epsilon subunit [Escherichia coli PA10]
gi|424138292|ref|ZP_17870628.1| DNA polymerase III, epsilon subunit [Escherichia coli PA14]
gi|424144747|ref|ZP_17876549.1| DNA polymerase III, epsilon subunit [Escherichia coli PA15]
gi|424150893|ref|ZP_17882192.1| DNA polymerase III, epsilon subunit [Escherichia coli PA24]
gi|424181667|ref|ZP_17887608.1| DNA polymerase III, epsilon subunit [Escherichia coli PA25]
gi|424260930|ref|ZP_17893510.1| DNA polymerase III, epsilon subunit [Escherichia coli PA28]
gi|424418212|ref|ZP_17899281.1| DNA polymerase III, epsilon subunit [Escherichia coli PA32]
gi|424453291|ref|ZP_17904872.1| DNA polymerase III, epsilon subunit [Escherichia coli PA33]
gi|424459571|ref|ZP_17910571.1| DNA polymerase III, epsilon subunit [Escherichia coli PA39]
gi|424466029|ref|ZP_17916261.1| DNA polymerase III, epsilon subunit [Escherichia coli PA41]
gi|424472631|ref|ZP_17922337.1| DNA polymerase III, epsilon subunit [Escherichia coli PA42]
gi|424478602|ref|ZP_17927885.1| DNA polymerase III, epsilon subunit [Escherichia coli TW07945]
gi|424484628|ref|ZP_17933540.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09098]
gi|424490725|ref|ZP_17939190.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09195]
gi|424497844|ref|ZP_17945159.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4203]
gi|424504088|ref|ZP_17950907.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4196]
gi|424516692|ref|ZP_17961263.1| DNA polymerase III, epsilon subunit [Escherichia coli TW14313]
gi|424517912|ref|ZP_17962380.1| DNA polymerase III, epsilon subunit [Escherichia coli TW14301]
gi|424523738|ref|ZP_17967799.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4421]
gi|424529946|ref|ZP_17973608.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4422]
gi|424535917|ref|ZP_17979218.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4013]
gi|424541805|ref|ZP_17984682.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4402]
gi|424548129|ref|ZP_17990384.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4439]
gi|424554417|ref|ZP_17996179.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4436]
gi|424560762|ref|ZP_18002082.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4437]
gi|424566773|ref|ZP_18007733.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4448]
gi|424572972|ref|ZP_18013437.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1845]
gi|424578950|ref|ZP_18018918.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1863]
gi|425095615|ref|ZP_18498667.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.4870]
gi|425101697|ref|ZP_18504379.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.2239]
gi|425107557|ref|ZP_18509835.1| DNA polymerase III, epsilon subunit [Escherichia coli 6.0172]
gi|425123368|ref|ZP_18524976.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0586]
gi|425129394|ref|ZP_18530529.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.2524]
gi|425135735|ref|ZP_18536498.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0833]
gi|425141680|ref|ZP_18542006.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0869]
gi|425147958|ref|ZP_18547889.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.0221]
gi|425153572|ref|ZP_18553153.1| DNA polymerase III, epsilon subunit [Escherichia coli PA34]
gi|425160035|ref|ZP_18559238.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA506]
gi|425165551|ref|ZP_18564386.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA507]
gi|425171837|ref|ZP_18570266.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA504]
gi|425177634|ref|ZP_18575716.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1999]
gi|425183862|ref|ZP_18581516.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1997]
gi|425190592|ref|ZP_18587746.1| DNA polymerase III, epsilon subunit [Escherichia coli NE1487]
gi|425196894|ref|ZP_18593579.1| DNA polymerase III, epsilon subunit [Escherichia coli NE037]
gi|425203588|ref|ZP_18599743.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK2001]
gi|425209363|ref|ZP_18605129.1| DNA polymerase III, epsilon subunit [Escherichia coli PA4]
gi|425215404|ref|ZP_18610750.1| DNA polymerase III, epsilon subunit [Escherichia coli PA23]
gi|425221971|ref|ZP_18616857.1| DNA polymerase III, epsilon subunit [Escherichia coli PA49]
gi|425228222|ref|ZP_18622646.1| DNA polymerase III, epsilon subunit [Escherichia coli PA45]
gi|425234522|ref|ZP_18628507.1| DNA polymerase III, epsilon subunit [Escherichia coli TT12B]
gi|425240493|ref|ZP_18634157.1| DNA polymerase III, epsilon subunit [Escherichia coli MA6]
gi|425246574|ref|ZP_18639806.1| DNA polymerase III, epsilon subunit [Escherichia coli 5905]
gi|425252363|ref|ZP_18645277.1| DNA polymerase III, epsilon subunit [Escherichia coli CB7326]
gi|425258699|ref|ZP_18651097.1| DNA polymerase III, epsilon subunit [Escherichia coli EC96038]
gi|425264814|ref|ZP_18656764.1| DNA polymerase III, epsilon subunit [Escherichia coli 5412]
gi|425292196|ref|ZP_18682828.1| DNA polymerase III, epsilon subunit [Escherichia coli PA38]
gi|425308976|ref|ZP_18698481.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1735]
gi|425314903|ref|ZP_18704015.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1736]
gi|425320980|ref|ZP_18709693.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1737]
gi|425327139|ref|ZP_18715405.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1846]
gi|425333329|ref|ZP_18721091.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1847]
gi|425339749|ref|ZP_18727023.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1848]
gi|425345624|ref|ZP_18732466.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1849]
gi|425351842|ref|ZP_18738257.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1850]
gi|425357829|ref|ZP_18743834.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1856]
gi|425363940|ref|ZP_18749536.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1862]
gi|425370376|ref|ZP_18755376.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1864]
gi|425383166|ref|ZP_18767079.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1866]
gi|425389872|ref|ZP_18773361.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1868]
gi|425395995|ref|ZP_18779069.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1869]
gi|425401963|ref|ZP_18784603.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1870]
gi|425408528|ref|ZP_18790710.1| DNA polymerase III, epsilon subunit [Escherichia coli NE098]
gi|425414798|ref|ZP_18796461.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK523]
gi|425425945|ref|ZP_18807024.1| DNA polymerase III, epsilon subunit [Escherichia coli 0.1304]
gi|428944574|ref|ZP_19017261.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.1467]
gi|428950750|ref|ZP_19022925.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.1042]
gi|428956597|ref|ZP_19028339.1| DNA polymerase III, epsilon subunit [Escherichia coli 89.0511]
gi|428962965|ref|ZP_19034179.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.0091]
gi|428969020|ref|ZP_19039682.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.0039]
gi|428975566|ref|ZP_19045770.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.2281]
gi|428981261|ref|ZP_19051026.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0055]
gi|428987552|ref|ZP_19056873.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0056]
gi|428993363|ref|ZP_19062301.1| DNA polymerase III, epsilon subunit [Escherichia coli 94.0618]
gi|428999451|ref|ZP_19067995.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0183]
gi|429010715|ref|ZP_19078101.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.1288]
gi|429012056|ref|ZP_19079337.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0943]
gi|429018304|ref|ZP_19085114.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0428]
gi|429023935|ref|ZP_19090380.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0427]
gi|429030236|ref|ZP_19096140.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0939]
gi|429036392|ref|ZP_19101865.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0932]
gi|429042415|ref|ZP_19107447.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0107]
gi|429048190|ref|ZP_19112857.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0003]
gi|429053547|ref|ZP_19118061.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.1742]
gi|429059254|ref|ZP_19123423.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0007]
gi|429064638|ref|ZP_19128533.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0672]
gi|429071254|ref|ZP_19134621.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0678]
gi|429076484|ref|ZP_19139713.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0713]
gi|429823702|ref|ZP_19355253.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0109]
gi|429830075|ref|ZP_19360984.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0010]
gi|444922417|ref|ZP_21242175.1| DNA polymerase III, epsilon subunit [Escherichia coli 09BKT078844]
gi|444928728|ref|ZP_21247899.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0814]
gi|444934133|ref|ZP_21253095.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0815]
gi|444939703|ref|ZP_21258371.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0816]
gi|444945267|ref|ZP_21263704.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0839]
gi|444950818|ref|ZP_21269061.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0848]
gi|444956295|ref|ZP_21274316.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1753]
gi|444961633|ref|ZP_21279404.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1775]
gi|444967358|ref|ZP_21284842.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1793]
gi|444972860|ref|ZP_21290163.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1805]
gi|444978368|ref|ZP_21295375.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 700728]
gi|444983691|ref|ZP_21300566.1| DNA polymerase III, epsilon subunit [Escherichia coli PA11]
gi|444988641|ref|ZP_21305394.1| DNA polymerase III, epsilon subunit [Escherichia coli PA19]
gi|444994245|ref|ZP_21310855.1| DNA polymerase III, epsilon subunit [Escherichia coli PA13]
gi|444999768|ref|ZP_21316241.1| DNA polymerase III, epsilon subunit [Escherichia coli PA2]
gi|445005223|ref|ZP_21321576.1| DNA polymerase III, epsilon subunit [Escherichia coli PA47]
gi|445010402|ref|ZP_21326607.1| DNA polymerase III, epsilon subunit [Escherichia coli PA48]
gi|445016164|ref|ZP_21332224.1| DNA polymerase III, epsilon subunit [Escherichia coli PA8]
gi|445021636|ref|ZP_21337569.1| DNA polymerase III, epsilon subunit [Escherichia coli 7.1982]
gi|445026880|ref|ZP_21342668.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1781]
gi|445032352|ref|ZP_21347989.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1762]
gi|445038050|ref|ZP_21353532.1| DNA polymerase III, epsilon subunit [Escherichia coli PA35]
gi|445043220|ref|ZP_21358568.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.4880]
gi|445048868|ref|ZP_21364050.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0083]
gi|445054492|ref|ZP_21369453.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0670]
gi|12512943|gb|AAG54511.1|AE005196_9 DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EDL933]
gi|13359667|dbj|BAB33634.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
Sakai]
gi|81239749|gb|ABB60459.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae Sd197]
gi|187768434|gb|EDU32278.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4196]
gi|188015573|gb|EDU53695.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4113]
gi|188999632|gb|EDU68618.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4076]
gi|189355702|gb|EDU74121.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4401]
gi|189361034|gb|EDU79453.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4486]
gi|189366358|gb|EDU84774.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4501]
gi|189370736|gb|EDU89152.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC869]
gi|189377309|gb|EDU95725.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC508]
gi|208729233|gb|EDZ78834.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4206]
gi|208734611|gb|EDZ83298.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4045]
gi|208738502|gb|EDZ86184.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4042]
gi|209162294|gb|ACI39727.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4115]
gi|209745474|gb|ACI71044.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|209745476|gb|ACI71045.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|209745478|gb|ACI71046.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|209745480|gb|ACI71047.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|209745482|gb|ACI71048.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|254590742|gb|ACT70103.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
TW14359]
gi|290760905|gb|ADD54866.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str.
CB9615]
gi|291433528|gb|EFF06501.1| DNA polymerase III [Escherichia coli B185]
gi|308924688|gb|EFP70183.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
gi|320190264|gb|EFW64914.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
EC1212]
gi|320650355|gb|EFX18832.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H
2687]
gi|320665449|gb|EFX32511.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
LSU-61]
gi|326338809|gb|EGD62628.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
1044]
gi|326342399|gb|EGD66179.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
1125]
gi|374357131|gb|AEZ38838.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
RM12579]
gi|377897030|gb|EHU61418.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3A]
gi|377900302|gb|EHU64635.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3B]
gi|377902238|gb|EHU66544.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3C]
gi|377919478|gb|EHU83520.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3D]
gi|377921191|gb|EHU85194.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3E]
gi|377923078|gb|EHU87047.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4B]
gi|377934140|gb|EHU97977.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4A]
gi|377934223|gb|EHU98057.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3F]
gi|377946047|gb|EHV09736.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4C]
gi|377951747|gb|EHV15361.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4D]
gi|377955852|gb|EHV19405.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4E]
gi|377965824|gb|EHV29237.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5A]
gi|377967106|gb|EHV30512.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4F]
gi|377973871|gb|EHV37201.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5B]
gi|377982090|gb|EHV45343.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5D]
gi|377983179|gb|EHV46424.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5C]
gi|377988291|gb|EHV51469.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5E]
gi|386794226|gb|AFJ27260.1| DNA polymerase III subunit epsilon [Escherichia coli Xuzhou21]
gi|390651390|gb|EIN29686.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1996]
gi|390653968|gb|EIN32043.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA517]
gi|390654050|gb|EIN32113.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA505]
gi|390670749|gb|EIN47260.1| DNA polymerase III, epsilon subunit [Escherichia coli 93-001]
gi|390675719|gb|EIN51844.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1985]
gi|390689640|gb|EIN64567.1| DNA polymerase III, epsilon subunit [Escherichia coli PA3]
gi|390693234|gb|EIN67871.1| DNA polymerase III, epsilon subunit [Escherichia coli PA9]
gi|390694451|gb|EIN69024.1| DNA polymerase III, epsilon subunit [Escherichia coli PA5]
gi|390709411|gb|EIN82512.1| DNA polymerase III, epsilon subunit [Escherichia coli PA10]
gi|390711552|gb|EIN84524.1| DNA polymerase III, epsilon subunit [Escherichia coli PA15]
gi|390714632|gb|EIN87518.1| DNA polymerase III, epsilon subunit [Escherichia coli PA14]
gi|390720895|gb|EIN93597.1| DNA polymerase III, epsilon subunit [Escherichia coli PA22]
gi|390734655|gb|EIO06145.1| DNA polymerase III, epsilon subunit [Escherichia coli PA25]
gi|390734757|gb|EIO06213.1| DNA polymerase III, epsilon subunit [Escherichia coli PA24]
gi|390737980|gb|EIO09217.1| DNA polymerase III, epsilon subunit [Escherichia coli PA28]
gi|390753134|gb|EIO22884.1| DNA polymerase III, epsilon subunit [Escherichia coli PA31]
gi|390753459|gb|EIO23166.1| DNA polymerase III, epsilon subunit [Escherichia coli PA32]
gi|390757458|gb|EIO26939.1| DNA polymerase III, epsilon subunit [Escherichia coli PA33]
gi|390762769|gb|EIO32024.1| DNA polymerase III, epsilon subunit [Escherichia coli PA40]
gi|390777080|gb|EIO44941.1| DNA polymerase III, epsilon subunit [Escherichia coli PA41]
gi|390779915|gb|EIO47626.1| DNA polymerase III, epsilon subunit [Escherichia coli PA42]
gi|390783154|gb|EIO50765.1| DNA polymerase III, epsilon subunit [Escherichia coli TW06591]
gi|390787526|gb|EIO55009.1| DNA polymerase III, epsilon subunit [Escherichia coli PA39]
gi|390795720|gb|EIO63002.1| DNA polymerase III, epsilon subunit [Escherichia coli TW10246]
gi|390802373|gb|EIO69410.1| DNA polymerase III, epsilon subunit [Escherichia coli TW11039]
gi|390811647|gb|EIO78346.1| DNA polymerase III, epsilon subunit [Escherichia coli TW07945]
gi|390811727|gb|EIO78412.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09109]
gi|390819805|gb|EIO86130.1| DNA polymerase III, epsilon subunit [Escherichia coli TW10119]
gi|390824558|gb|EIO90527.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09098]
gi|390837796|gb|EIP02140.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4203]
gi|390840779|gb|EIP04779.1| DNA polymerase III, epsilon subunit [Escherichia coli TW14313]
gi|390840896|gb|EIP04884.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4196]
gi|390844651|gb|EIP08357.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09195]
gi|390856426|gb|EIP19022.1| DNA polymerase III, epsilon subunit [Escherichia coli TW14301]
gi|390861280|gb|EIP23544.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4421]
gi|390872339|gb|EIP33654.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4422]
gi|390877530|gb|EIP38450.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4013]
gi|390887037|gb|EIP47040.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4402]
gi|390888749|gb|EIP48556.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4439]
gi|390895903|gb|EIP55311.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4436]
gi|390903866|gb|EIP62882.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1738]
gi|390912116|gb|EIP70795.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4437]
gi|390912295|gb|EIP70950.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1734]
gi|390916866|gb|EIP75301.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4448]
gi|390925430|gb|EIP83117.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1863]
gi|390926554|gb|EIP84119.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1845]
gi|408072778|gb|EKH07095.1| DNA polymerase III, epsilon subunit [Escherichia coli PA7]
gi|408077106|gb|EKH11319.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK920]
gi|408087075|gb|EKH20547.1| DNA polymerase III, epsilon subunit [Escherichia coli PA34]
gi|408091590|gb|EKH24812.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA506]
gi|408097127|gb|EKH30029.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA507]
gi|408103537|gb|EKH35881.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA504]
gi|408111136|gb|EKH42906.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1999]
gi|408117241|gb|EKH48447.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1997]
gi|408122736|gb|EKH53553.1| DNA polymerase III, epsilon subunit [Escherichia coli NE1487]
gi|408130925|gb|EKH60990.1| DNA polymerase III, epsilon subunit [Escherichia coli NE037]
gi|408132838|gb|EKH62777.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK2001]
gi|408142019|gb|EKH71425.1| DNA polymerase III, epsilon subunit [Escherichia coli PA4]
gi|408150813|gb|EKH79351.1| DNA polymerase III, epsilon subunit [Escherichia coli PA23]
gi|408154354|gb|EKH82706.1| DNA polymerase III, epsilon subunit [Escherichia coli PA49]
gi|408159319|gb|EKH87392.1| DNA polymerase III, epsilon subunit [Escherichia coli PA45]
gi|408167769|gb|EKH95251.1| DNA polymerase III, epsilon subunit [Escherichia coli TT12B]
gi|408173431|gb|EKI00452.1| DNA polymerase III, epsilon subunit [Escherichia coli MA6]
gi|408175403|gb|EKI02321.1| DNA polymerase III, epsilon subunit [Escherichia coli 5905]
gi|408187808|gb|EKI13717.1| DNA polymerase III, epsilon subunit [Escherichia coli CB7326]
gi|408193394|gb|EKI18931.1| DNA polymerase III, epsilon subunit [Escherichia coli 5412]
gi|408193809|gb|EKI19326.1| DNA polymerase III, epsilon subunit [Escherichia coli EC96038]
gi|408234211|gb|EKI57239.1| DNA polymerase III, epsilon subunit [Escherichia coli PA38]
gi|408240675|gb|EKI63342.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1735]
gi|408250148|gb|EKI72026.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1736]
gi|408254499|gb|EKI76017.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1737]
gi|408260769|gb|EKI81835.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1846]
gi|408269283|gb|EKI89547.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1847]
gi|408271131|gb|EKI91274.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1848]
gi|408280216|gb|EKI99787.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1849]
gi|408286124|gb|EKJ05074.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1850]
gi|408288992|gb|EKJ07776.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1856]
gi|408301653|gb|EKJ19230.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1862]
gi|408301691|gb|EKJ19255.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1864]
gi|408319365|gb|EKJ35506.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1868]
gi|408319554|gb|EKJ35688.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1866]
gi|408332297|gb|EKJ47350.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1869]
gi|408337895|gb|EKJ52577.1| DNA polymerase III, epsilon subunit [Escherichia coli NE098]
gi|408339500|gb|EKJ54075.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1870]
gi|408351044|gb|EKJ64854.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK523]
gi|408353503|gb|EKJ67004.1| DNA polymerase III, epsilon subunit [Escherichia coli 0.1304]
gi|408560148|gb|EKK36428.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.2239]
gi|408560190|gb|EKK36457.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.4870]
gi|408561339|gb|EKK37559.1| DNA polymerase III, epsilon subunit [Escherichia coli 6.0172]
gi|408585948|gb|EKK60755.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0586]
gi|408591867|gb|EKK66284.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.2524]
gi|408593253|gb|EKK67579.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0833]
gi|408605366|gb|EKK78880.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0869]
gi|408606200|gb|EKK79655.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0416]
gi|408613320|gb|EKK86626.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.0221]
gi|408617965|gb|EKK91060.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0821]
gi|427215369|gb|EKV84553.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.1042]
gi|427218817|gb|EKV87802.1| DNA polymerase III, epsilon subunit [Escherichia coli 89.0511]
gi|427218990|gb|EKV87965.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.1467]
gi|427235080|gb|EKW02725.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.2281]
gi|427235175|gb|EKW02813.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.0039]
gi|427237466|gb|EKW05004.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.0091]
gi|427252168|gb|EKW18672.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0056]
gi|427253828|gb|EKW20216.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0055]
gi|427254786|gb|EKW21081.1| DNA polymerase III, epsilon subunit [Escherichia coli 94.0618]
gi|427258229|gb|EKW24325.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.1288]
gi|427271400|gb|EKW36218.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0943]
gi|427271965|gb|EKW36738.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0183]
gi|427287200|gb|EKW50988.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0428]
gi|427293101|gb|EKW56377.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0427]
gi|427294669|gb|EKW57840.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0939]
gi|427305236|gb|EKW67835.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0003]
gi|427307545|gb|EKW69987.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0932]
gi|427311905|gb|EKW74077.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0107]
gi|427322723|gb|EKW84349.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.1742]
gi|427323374|gb|EKW84950.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0007]
gi|427335136|gb|EKW96175.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0713]
gi|427335176|gb|EKW96212.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0678]
gi|427337190|gb|EKW98113.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0672]
gi|429260672|gb|EKY44209.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0109]
gi|429262243|gb|EKY45593.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0010]
gi|444543303|gb|ELV22578.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0814]
gi|444551882|gb|ELV29756.1| DNA polymerase III, epsilon subunit [Escherichia coli 09BKT078844]
gi|444552541|gb|ELV30338.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0815]
gi|444565955|gb|ELV42796.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0839]
gi|444568228|gb|ELV44916.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0816]
gi|444572799|gb|ELV49210.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0848]
gi|444583537|gb|ELV59248.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1753]
gi|444586396|gb|ELV61904.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1775]
gi|444586766|gb|ELV62251.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1793]
gi|444600796|gb|ELV75616.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 700728]
gi|444600870|gb|ELV75684.1| DNA polymerase III, epsilon subunit [Escherichia coli PA11]
gi|444609909|gb|ELV84351.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1805]
gi|444616079|gb|ELV90252.1| DNA polymerase III, epsilon subunit [Escherichia coli PA13]
gi|444616739|gb|ELV90892.1| DNA polymerase III, epsilon subunit [Escherichia coli PA19]
gi|444624403|gb|ELV98288.1| DNA polymerase III, epsilon subunit [Escherichia coli PA2]
gi|444633572|gb|ELW07085.1| DNA polymerase III, epsilon subunit [Escherichia coli PA48]
gi|444633838|gb|ELW07336.1| DNA polymerase III, epsilon subunit [Escherichia coli PA47]
gi|444638710|gb|ELW12038.1| DNA polymerase III, epsilon subunit [Escherichia coli PA8]
gi|444648759|gb|ELW21675.1| DNA polymerase III, epsilon subunit [Escherichia coli 7.1982]
gi|444650906|gb|ELW23720.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1781]
gi|444654914|gb|ELW27544.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1762]
gi|444664003|gb|ELW36206.1| DNA polymerase III, epsilon subunit [Escherichia coli PA35]
gi|444668619|gb|ELW40629.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.4880]
gi|444673403|gb|ELW45041.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0083]
gi|444674834|gb|ELW46331.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0670]
Length = 243
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|424100528|ref|ZP_17835731.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1990]
gi|390674553|gb|EIN50737.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1990]
Length = 243
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|354596500|ref|ZP_09014517.1| DNA polymerase III, epsilon subunit [Brenneria sp. EniD312]
gi|353674435|gb|EHD20468.1| DNA polymerase III, epsilon subunit [Brenneria sp. EniD312]
Length = 245
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPDRLVDPE-----AYNV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + + PT+A+IAD D + G HN + FD + F + R P+ +
Sbjct: 66 HGISDEFLADRPTYAEIADDFLDFIRGAELVIHNAM-FDIGFMDYEFRMLNREIPKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSL + + F G+R
Sbjct: 125 CKITDSLLMARKIFPGKR 142
>gi|188494951|ref|ZP_03002221.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
gi|194438247|ref|ZP_03070339.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
gi|251783772|ref|YP_002998076.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III,
core enzyme and DNA polymerase III, holoenzyme
[Escherichia coli BL21(DE3)]
gi|254160329|ref|YP_003043437.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
gi|254287132|ref|YP_003052880.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)]
gi|312970313|ref|ZP_07784494.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
gi|387610681|ref|YP_006113797.1| DNA polymerase III subunit epsilon [Escherichia coli ETEC H10407]
gi|417637478|ref|ZP_12287659.1| DNA polymerase III, epsilon subunit [Escherichia coli TX1999]
gi|419183994|ref|ZP_13727557.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7C]
gi|419184691|ref|ZP_13728217.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7D]
gi|419189959|ref|ZP_13733431.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7E]
gi|420383851|ref|ZP_14883243.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa12]
gi|425286730|ref|ZP_18677679.1| DNA polymerase III, epsilon subunit [Escherichia coli 3006]
gi|425303732|ref|ZP_18693538.1| DNA polymerase III, epsilon subunit [Escherichia coli N1]
gi|427803284|ref|ZP_18970351.1| DNA polymerase III [Escherichia coli chi7122]
gi|427807889|ref|ZP_18974954.1| DNA polymerase III, epsilon subunit [Escherichia coli]
gi|443616223|ref|YP_007380079.1| DNA polymerase III, epsilon subunit-related 3-5 exonuclease
[Escherichia coli APEC O78]
gi|188490150|gb|EDU65253.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
gi|194422911|gb|EDX38906.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
gi|242376045|emb|CAQ30730.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III,
core enzyme and DNA polymerase III, holoenzyme
[Escherichia coli BL21(DE3)]
gi|253972230|gb|ACT37901.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
gi|253976439|gb|ACT42109.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)]
gi|309700417|emb|CBI99706.1| DNA polymerase III epsilon subunit [Escherichia coli ETEC H10407]
gi|310336962|gb|EFQ02100.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
gi|345395798|gb|EGX25536.1| DNA polymerase III, epsilon subunit [Escherichia coli TX1999]
gi|378019829|gb|EHV82629.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7C]
gi|378034318|gb|EHV96884.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7D]
gi|378043023|gb|EHW05462.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7E]
gi|391310200|gb|EIQ67856.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa12]
gi|408219543|gb|EKI43682.1| DNA polymerase III, epsilon subunit [Escherichia coli 3006]
gi|408232476|gb|EKI55674.1| DNA polymerase III, epsilon subunit [Escherichia coli N1]
gi|412961466|emb|CCK45371.1| DNA polymerase III [Escherichia coli chi7122]
gi|412968068|emb|CCJ42681.1| DNA polymerase III, epsilon subunit [Escherichia coli]
gi|443420731|gb|AGC85635.1| DNA polymerase III, epsilon subunit-related 3-5 exonuclease
[Escherichia coli APEC O78]
Length = 243
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|432892848|ref|ZP_20104953.1| DNA polymerase III subunit epsilon [Escherichia coli KTE165]
gi|431425300|gb|ELH07370.1| DNA polymerase III subunit epsilon [Escherichia coli KTE165]
Length = 246
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|331645384|ref|ZP_08346488.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
gi|432396067|ref|ZP_19638859.1| DNA polymerase III subunit epsilon [Escherichia coli KTE25]
gi|432405099|ref|ZP_19647822.1| DNA polymerase III subunit epsilon [Escherichia coli KTE28]
gi|432420335|ref|ZP_19662893.1| DNA polymerase III subunit epsilon [Escherichia coli KTE178]
gi|432498511|ref|ZP_19740291.1| DNA polymerase III subunit epsilon [Escherichia coli KTE216]
gi|432557242|ref|ZP_19793935.1| DNA polymerase III subunit epsilon [Escherichia coli KTE49]
gi|432693051|ref|ZP_19928266.1| DNA polymerase III subunit epsilon [Escherichia coli KTE162]
gi|432709056|ref|ZP_19944125.1| DNA polymerase III subunit epsilon [Escherichia coli KTE6]
gi|432721813|ref|ZP_19956741.1| DNA polymerase III subunit epsilon [Escherichia coli KTE17]
gi|432726308|ref|ZP_19961191.1| DNA polymerase III subunit epsilon [Escherichia coli KTE18]
gi|432739990|ref|ZP_19974712.1| DNA polymerase III subunit epsilon [Escherichia coli KTE23]
gi|432917215|ref|ZP_20121869.1| DNA polymerase III subunit epsilon [Escherichia coli KTE173]
gi|432924493|ref|ZP_20126780.1| DNA polymerase III subunit epsilon [Escherichia coli KTE175]
gi|432979770|ref|ZP_20168551.1| DNA polymerase III subunit epsilon [Escherichia coli KTE211]
gi|432989304|ref|ZP_20177974.1| DNA polymerase III subunit epsilon [Escherichia coli KTE217]
gi|433095125|ref|ZP_20281343.1| DNA polymerase III subunit epsilon [Escherichia coli KTE139]
gi|433104402|ref|ZP_20290425.1| DNA polymerase III subunit epsilon [Escherichia coli KTE148]
gi|433109391|ref|ZP_20295274.1| DNA polymerase III subunit epsilon [Escherichia coli KTE150]
gi|331045546|gb|EGI17672.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
gi|430918449|gb|ELC39450.1| DNA polymerase III subunit epsilon [Escherichia coli KTE25]
gi|430932595|gb|ELC53014.1| DNA polymerase III subunit epsilon [Escherichia coli KTE28]
gi|430947500|gb|ELC67197.1| DNA polymerase III subunit epsilon [Escherichia coli KTE178]
gi|431032105|gb|ELD44816.1| DNA polymerase III subunit epsilon [Escherichia coli KTE216]
gi|431094295|gb|ELD99926.1| DNA polymerase III subunit epsilon [Escherichia coli KTE49]
gi|431237193|gb|ELF32193.1| DNA polymerase III subunit epsilon [Escherichia coli KTE162]
gi|431252777|gb|ELF46291.1| DNA polymerase III subunit epsilon [Escherichia coli KTE6]
gi|431268558|gb|ELF60027.1| DNA polymerase III subunit epsilon [Escherichia coli KTE17]
gi|431276416|gb|ELF67436.1| DNA polymerase III subunit epsilon [Escherichia coli KTE18]
gi|431286119|gb|ELF76945.1| DNA polymerase III subunit epsilon [Escherichia coli KTE23]
gi|431447867|gb|ELH28587.1| DNA polymerase III subunit epsilon [Escherichia coli KTE173]
gi|431450134|gb|ELH30626.1| DNA polymerase III subunit epsilon [Escherichia coli KTE175]
gi|431496391|gb|ELH75974.1| DNA polymerase III subunit epsilon [Escherichia coli KTE211]
gi|431498549|gb|ELH77734.1| DNA polymerase III subunit epsilon [Escherichia coli KTE217]
gi|431620003|gb|ELI88891.1| DNA polymerase III subunit epsilon [Escherichia coli KTE139]
gi|431632934|gb|ELJ01219.1| DNA polymerase III subunit epsilon [Escherichia coli KTE150]
gi|431634426|gb|ELJ02667.1| DNA polymerase III subunit epsilon [Escherichia coli KTE148]
Length = 246
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|433650621|ref|YP_007295623.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium smegmatis JS623]
gi|433300398|gb|AGB26218.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium smegmatis JS623]
Length = 329
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVET+ RPGQ I+ A+ + E Y+ L DP +G+
Sbjct: 17 AVVDVETS-GFRPGQA-RIVSVAALALGDDGNVEQSLYTLLNPGVDPG-----PTHVHGL 69
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T + + P F D+ + ++L R HN+ FD + + +G A P T+
Sbjct: 70 TAEMLEGQPCFGDVVGPLVELLKDRTLVAHNV-GFDYSFLAAEAELVG--AELPVDTVMC 126
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
LT+R ++++A+LA+++G+ Q + H +LDD + ++LK
Sbjct: 127 TVELTRRLELGTENLQLATLASHWGITQIKPHDALDDAMVLAQILK 172
>gi|30061767|ref|NP_835938.1| DNA polymerase III subunit epsilon [Shigella flexneri 2a str.
2457T]
gi|56479626|ref|NP_706156.2| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 301]
gi|218547665|ref|YP_002381456.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ATCC
35469]
gi|415859650|ref|ZP_11533849.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
2457T]
gi|417136643|ref|ZP_11980671.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0259]
gi|417306744|ref|ZP_12093629.1| DNA polymerase III subunit epsilon [Escherichia coli PCN033]
gi|417705720|ref|ZP_12354792.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6]
gi|417710851|ref|ZP_12359858.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272]
gi|417715518|ref|ZP_12364454.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227]
gi|417721200|ref|ZP_12370053.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304]
gi|417726561|ref|ZP_12375310.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671]
gi|417735342|ref|ZP_12383988.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71]
gi|417737053|ref|ZP_12385665.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70]
gi|417741698|ref|ZP_12390253.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71]
gi|417826295|ref|ZP_12472875.1| DNA polymerase III, epsilon subunit [Shigella flexneri J1713]
gi|418253003|ref|ZP_12878376.1| DNA polymerase III, epsilon subunit [Shigella flexneri 6603-63]
gi|420318689|ref|ZP_14820548.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2850-71]
gi|420329335|ref|ZP_14831051.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-1770]
gi|420339687|ref|ZP_14841223.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-404]
gi|420369810|ref|ZP_14870473.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1235-66]
gi|450185276|ref|ZP_21888993.1| DNA polymerase III subunit epsilon [Escherichia coli SEPT362]
gi|30040009|gb|AAP15743.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
2457T]
gi|56383177|gb|AAN41863.2| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 301]
gi|218355206|emb|CAQ87813.1| DNA polymerase III epsilon subunit [Escherichia fergusonii ATCC
35469]
gi|313646728|gb|EFS11187.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
2457T]
gi|332754119|gb|EGJ84489.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71]
gi|332761998|gb|EGJ92270.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70]
gi|332764639|gb|EGJ94869.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671]
gi|332768614|gb|EGJ98795.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71]
gi|333009688|gb|EGK29138.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6]
gi|333010755|gb|EGK30181.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272]
gi|333021254|gb|EGK40507.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227]
gi|333022178|gb|EGK41418.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304]
gi|335578209|gb|EGM63434.1| DNA polymerase III, epsilon subunit [Shigella flexneri J1713]
gi|338771681|gb|EGP26416.1| DNA polymerase III subunit epsilon [Escherichia coli PCN033]
gi|386159504|gb|EIH15830.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0259]
gi|391255043|gb|EIQ14196.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2850-71]
gi|391260810|gb|EIQ19863.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-1770]
gi|391275106|gb|EIQ33902.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-404]
gi|391320887|gb|EIQ77672.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1235-66]
gi|397901913|gb|EJL18252.1| DNA polymerase III, epsilon subunit [Shigella flexneri 6603-63]
gi|449325249|gb|EMD15161.1| DNA polymerase III subunit epsilon [Escherichia coli SEPT362]
Length = 243
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|437870410|ref|ZP_20848366.1| DNA polymerase III subunit epsilon, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|435335112|gb|ELP05446.1| DNA polymerase III subunit epsilon, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
Length = 232
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|429109040|ref|ZP_19170810.1| DNA polymerase III epsilon subunit [Cronobacter malonaticus 507]
gi|426310197|emb|CCJ96923.1| DNA polymerase III epsilon subunit [Cronobacter malonaticus 507]
Length = 243
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFMV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + +++ P F D+ D D + G HN FD + F + R P+ +
Sbjct: 66 HGISDEFLLNKPVFGDVVDDFLDYIRGAELVIHNA-SFDIGFMDYEFGMLNRGIPKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|379729757|ref|YP_005321953.1| putative DNA polymerase III subunit epsilon [Saprospira grandis
str. Lewin]
gi|378575368|gb|AFC24369.1| putative DNA polymerase III epsilon chain [Saprospira grandis str.
Lewin]
Length = 248
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELI 60
MG +R + FFD+ETT + R I++ GAI + P E+ N LV P P I
Sbjct: 1 MGLQLERP-LVFFDLETTGTSIVNDR--IVQIGAIKLFPDGRTEVKN--RLVNPQMP--I 53
Query: 61 SSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
+ +GI VV+ P F +A + L AG+N FD + E FA G
Sbjct: 54 PEGASAVHGIYDKDVVNEPKFRQLAKAFYGWLKDSDLAGYNSDNFDIPMLAEEFARAGIE 113
Query: 121 APEP 124
P P
Sbjct: 114 YPTP 117
>gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
Length = 948
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 11 AFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
A D+ETT G R I++ G + V ++ ++++ T V P E+ +++S R G
Sbjct: 8 AVVDIETTGTSVTDGDR--IIQIGCVFVQHNQV--INHFETDVNPLK-EIPAAIS-RLTG 61
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
IT V +P F D+A T++ +L ++ HN+ FD I +G PA P +D
Sbjct: 62 ITNKRVRHAPLFDDVAGTLYSLLTNTVFVAHNV-NFDLPFINAELERVGYPAL-PIAAVD 119
Query: 130 SLAL 133
+++L
Sbjct: 120 TVSL 123
>gi|16128202|ref|NP_414751.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
substr. MG1655]
gi|170079846|ref|YP_001729166.1| DNA polymerase III subunit epsilon [Escherichia coli str. K-12
substr. DH10B]
gi|238899608|ref|YP_002925404.1| DNA polymerase III subunit epsilon [Escherichia coli BW2952]
gi|386612374|ref|YP_006132040.1| DNA polymerase III subunit epsilon [Escherichia coli UMNK88]
gi|387619977|ref|YP_006127604.1| DNA polymerase III subunit epsilon [Escherichia coli DH1]
gi|388476328|ref|YP_488512.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
substr. W3110]
gi|415777407|ref|ZP_11488659.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431]
gi|417260481|ref|ZP_12047979.1| DNA polymerase III, epsilon subunit [Escherichia coli 2.3916]
gi|417273865|ref|ZP_12061210.1| DNA polymerase III, epsilon subunit [Escherichia coli 2.4168]
gi|417279570|ref|ZP_12066876.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.2303]
gi|417293268|ref|ZP_12080548.1| DNA polymerase III, epsilon subunit [Escherichia coli B41]
gi|417611223|ref|ZP_12261698.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_EH250]
gi|417616555|ref|ZP_12266993.1| DNA polymerase III, epsilon subunit [Escherichia coli G58-1]
gi|417632692|ref|ZP_12282914.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_S1191]
gi|417946839|ref|ZP_12590048.1| DNA polymerase III subunit epsilon [Escherichia coli XH140A]
gi|417978126|ref|ZP_12618899.1| DNA polymerase III subunit epsilon [Escherichia coli XH001]
gi|418301099|ref|ZP_12912893.1| DNA polymerase III, epsilon subunit [Escherichia coli UMNF18]
gi|419140670|ref|ZP_13685427.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6A]
gi|419146331|ref|ZP_13691028.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6B]
gi|419152054|ref|ZP_13696645.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6C]
gi|419157472|ref|ZP_13702002.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6D]
gi|419162476|ref|ZP_13706956.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6E]
gi|419173632|ref|ZP_13717490.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7B]
gi|419811178|ref|ZP_14336055.1| DNA polymerase III subunit epsilon [Escherichia coli O32:H37 str.
P4]
gi|421778107|ref|ZP_16214691.1| DNA polymerase III subunit epsilon [Escherichia coli AD30]
gi|422769464|ref|ZP_16823155.1| DNA polymerase III [Escherichia coli E482]
gi|425117387|ref|ZP_18519160.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0566]
gi|425118292|ref|ZP_18520037.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0569]
gi|425271399|ref|ZP_18662900.1| DNA polymerase III, epsilon subunit [Escherichia coli TW15901]
gi|425281552|ref|ZP_18672675.1| DNA polymerase III, epsilon subunit [Escherichia coli TW00353]
gi|442589893|ref|ZP_21008690.1| DNA polymerase III epsilon subunit [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|450238513|ref|ZP_21898906.1| DNA polymerase III subunit epsilon [Escherichia coli S17]
gi|118805|sp|P03007.1|DPO3E_ECOLI RecName: Full=DNA polymerase III subunit epsilon
gi|42063|emb|CAA27661.1| unnamed protein product [Escherichia coli]
gi|147679|gb|AAA24564.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|1786409|gb|AAC73320.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
substr. MG1655]
gi|4902952|dbj|BAA77886.1| DNA polymerase III epsilon subunit [Escherichia coli str. K12
substr. W3110]
gi|169887681|gb|ACB01388.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
substr. DH10B]
gi|238860830|gb|ACR62828.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952]
gi|315134900|dbj|BAJ42059.1| DNA polymerase III subunit epsilon [Escherichia coli DH1]
gi|315616887|gb|EFU97504.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431]
gi|323943406|gb|EGB39558.1| DNA polymerase III [Escherichia coli E482]
gi|332341543|gb|AEE54877.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli UMNK88]
gi|339413197|gb|AEJ54869.1| DNA polymerase III, epsilon subunit [Escherichia coli UMNF18]
gi|342361464|gb|EGU25602.1| DNA polymerase III subunit epsilon [Escherichia coli XH140A]
gi|344192189|gb|EGV46286.1| DNA polymerase III subunit epsilon [Escherichia coli XH001]
gi|345366310|gb|EGW98401.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_EH250]
gi|345382591|gb|EGX13465.1| DNA polymerase III, epsilon subunit [Escherichia coli G58-1]
gi|345391378|gb|EGX21170.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_S1191]
gi|359331068|dbj|BAL37515.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
substr. MDS42]
gi|378000003|gb|EHV63077.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6A]
gi|378002018|gb|EHV65073.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6B]
gi|378004027|gb|EHV67060.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6C]
gi|378015393|gb|EHV78289.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6D]
gi|378016942|gb|EHV79817.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6E]
gi|378038227|gb|EHW00744.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7B]
gi|385156120|gb|EIF18119.1| DNA polymerase III subunit epsilon [Escherichia coli O32:H37 str.
P4]
gi|386225639|gb|EII47964.1| DNA polymerase III, epsilon subunit [Escherichia coli 2.3916]
gi|386234047|gb|EII66027.1| DNA polymerase III, epsilon subunit [Escherichia coli 2.4168]
gi|386237669|gb|EII74613.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.2303]
gi|386252840|gb|EIJ02531.1| DNA polymerase III, epsilon subunit [Escherichia coli B41]
gi|408198050|gb|EKI23295.1| DNA polymerase III, epsilon subunit [Escherichia coli TW15901]
gi|408206583|gb|EKI31376.1| DNA polymerase III, epsilon subunit [Escherichia coli TW00353]
gi|408456839|gb|EKJ80646.1| DNA polymerase III subunit epsilon [Escherichia coli AD30]
gi|408563175|gb|EKK39315.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0566]
gi|408574183|gb|EKK49977.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0569]
gi|441609939|emb|CCP94603.1| DNA polymerase III epsilon subunit [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|449325450|gb|EMD15354.1| DNA polymerase III subunit epsilon [Escherichia coli S17]
Length = 243
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|193063208|ref|ZP_03044299.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
gi|300819828|ref|ZP_07100014.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
gi|300823399|ref|ZP_07103529.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
gi|300926565|ref|ZP_07142351.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
gi|301326098|ref|ZP_07219494.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
gi|307314695|ref|ZP_07594293.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
gi|309797929|ref|ZP_07692309.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
gi|331666456|ref|ZP_08367336.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
gi|331675873|ref|ZP_08376590.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
gi|378714452|ref|YP_005279345.1| DNA polymerase III subunit epsilon [Escherichia coli KO11FL]
gi|386607511|ref|YP_006122997.1| DNA polymerase III subunit epsilon [Escherichia coli W]
gi|386707938|ref|YP_006171659.1| DNA polymerase III subunit epsilon [Escherichia coli W]
gi|415876761|ref|ZP_11543119.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 79-10]
gi|416274001|ref|ZP_11643491.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC
74-1112]
gi|416284715|ref|ZP_11647376.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905]
gi|417152746|ref|ZP_11991537.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0497]
gi|417216585|ref|ZP_12023257.1| DNA polymerase III, epsilon subunit [Escherichia coli JB1-95]
gi|417230160|ref|ZP_12031746.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.0959]
gi|417252890|ref|ZP_12044649.1| DNA polymerase III, epsilon subunit [Escherichia coli 4.0967]
gi|417268195|ref|ZP_12055556.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.3884]
gi|419947841|ref|ZP_14464154.1| DNA polymerase III subunit epsilon [Escherichia coli CUMT8]
gi|422351268|ref|ZP_16432092.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3]
gi|422776854|ref|ZP_16830507.1| DNA polymerase III [Escherichia coli H120]
gi|422957447|ref|ZP_16969661.1| DNA polymerase III subunit epsilon [Escherichia coli H494]
gi|422990914|ref|ZP_16981685.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
C227-11]
gi|422992854|ref|ZP_16983618.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
C236-11]
gi|422998063|ref|ZP_16988819.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
09-7901]
gi|423006548|ref|ZP_16997291.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
04-8351]
gi|423008169|ref|ZP_16998907.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-3677]
gi|423022355|ref|ZP_17013058.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4404]
gi|423027510|ref|ZP_17018203.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4522]
gi|423033347|ref|ZP_17024031.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4623]
gi|423036213|ref|ZP_17026887.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041333|ref|ZP_17032000.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048019|ref|ZP_17038676.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423051603|ref|ZP_17040411.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423058568|ref|ZP_17047364.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423709943|ref|ZP_17684293.1| DNA polymerase III subunit epsilon [Escherichia coli B799]
gi|429722413|ref|ZP_19257311.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429774492|ref|ZP_19306495.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02030]
gi|429779754|ref|ZP_19311708.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02033-1]
gi|429783807|ref|ZP_19315720.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02092]
gi|429789145|ref|ZP_19321020.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02093]
gi|429795375|ref|ZP_19327201.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02281]
gi|429801301|ref|ZP_19333079.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02318]
gi|429804933|ref|ZP_19336680.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02913]
gi|429809744|ref|ZP_19341446.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-03439]
gi|429815504|ref|ZP_19347163.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-04080]
gi|429821092|ref|ZP_19352705.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-03943]
gi|429906765|ref|ZP_19372734.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910961|ref|ZP_19376917.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429916800|ref|ZP_19382740.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921838|ref|ZP_19387759.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429927656|ref|ZP_19393562.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429931588|ref|ZP_19397483.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429938130|ref|ZP_19404011.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429938844|ref|ZP_19404718.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429946487|ref|ZP_19412342.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949135|ref|ZP_19414983.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429957402|ref|ZP_19423231.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432375301|ref|ZP_19618317.1| DNA polymerase III subunit epsilon [Escherichia coli KTE12]
gi|432677807|ref|ZP_19913237.1| DNA polymerase III subunit epsilon [Escherichia coli KTE142]
gi|432748592|ref|ZP_19983220.1| DNA polymerase III subunit epsilon [Escherichia coli KTE29]
gi|432763495|ref|ZP_19997951.1| DNA polymerase III subunit epsilon [Escherichia coli KTE48]
gi|432804263|ref|ZP_20038209.1| DNA polymerase III subunit epsilon [Escherichia coli KTE91]
gi|432812363|ref|ZP_20046212.1| DNA polymerase III subunit epsilon [Escherichia coli KTE101]
gi|432830187|ref|ZP_20063796.1| DNA polymerase III subunit epsilon [Escherichia coli KTE135]
gi|432833313|ref|ZP_20066861.1| DNA polymerase III subunit epsilon [Escherichia coli KTE136]
gi|432932519|ref|ZP_20132373.1| DNA polymerase III subunit epsilon [Escherichia coli KTE184]
gi|432966351|ref|ZP_20155271.1| DNA polymerase III subunit epsilon [Escherichia coli KTE203]
gi|433090561|ref|ZP_20276871.1| DNA polymerase III subunit epsilon [Escherichia coli KTE138]
gi|433192001|ref|ZP_20376032.1| DNA polymerase III subunit epsilon [Escherichia coli KTE90]
gi|192931116|gb|EDV83719.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
gi|300417423|gb|EFK00734.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
gi|300524017|gb|EFK45086.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
gi|300527586|gb|EFK48648.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
gi|300847158|gb|EFK74918.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
gi|306905814|gb|EFN36339.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
gi|308118469|gb|EFO55731.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
gi|315059428|gb|ADT73755.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
gi|320173695|gb|EFW48884.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC
74-1112]
gi|320179852|gb|EFW54798.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905]
gi|323380013|gb|ADX52281.1| DNA polymerase III, epsilon subunit [Escherichia coli KO11FL]
gi|323945583|gb|EGB41633.1| DNA polymerase III [Escherichia coli H120]
gi|324020673|gb|EGB89892.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3]
gi|331066301|gb|EGI38179.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
gi|331076433|gb|EGI47710.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
gi|342928408|gb|EGU97130.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 79-10]
gi|354858047|gb|EHF18498.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
04-8351]
gi|354859900|gb|EHF20347.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
C227-11]
gi|354866597|gb|EHF27020.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
C236-11]
gi|354876931|gb|EHF37291.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
09-7901]
gi|354880939|gb|EHF41273.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4404]
gi|354883827|gb|EHF44141.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-3677]
gi|354885628|gb|EHF45920.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4522]
gi|354888695|gb|EHF48949.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4623]
gi|354901296|gb|EHF61423.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354905527|gb|EHF65610.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354908034|gb|EHF68090.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354918506|gb|EHF78462.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354922194|gb|EHF82109.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C4]
gi|371598253|gb|EHN87063.1| DNA polymerase III subunit epsilon [Escherichia coli H494]
gi|383403630|gb|AFH09873.1| DNA polymerase III subunit epsilon [Escherichia coli W]
gi|385705002|gb|EIG42071.1| DNA polymerase III subunit epsilon [Escherichia coli B799]
gi|386169470|gb|EIH35978.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0497]
gi|386193447|gb|EIH87731.1| DNA polymerase III, epsilon subunit [Escherichia coli JB1-95]
gi|386206650|gb|EII11156.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.0959]
gi|386216821|gb|EII33310.1| DNA polymerase III, epsilon subunit [Escherichia coli 4.0967]
gi|386230553|gb|EII57908.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.3884]
gi|388422426|gb|EIL82006.1| DNA polymerase III subunit epsilon [Escherichia coli CUMT8]
gi|429351308|gb|EKY88028.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02030]
gi|429352570|gb|EKY89283.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02033-1]
gi|429352769|gb|EKY89478.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02092]
gi|429366682|gb|EKZ03283.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02093]
gi|429367593|gb|EKZ04185.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02281]
gi|429370088|gb|EKZ06654.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02318]
gi|429382475|gb|EKZ18939.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02913]
gi|429384708|gb|EKZ21162.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-03943]
gi|429385231|gb|EKZ21684.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-03439]
gi|429396924|gb|EKZ33271.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-04080]
gi|429399170|gb|EKZ35491.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429399459|gb|EKZ35779.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429410214|gb|EKZ46436.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429412114|gb|EKZ48311.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429419099|gb|EKZ55237.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429422879|gb|EKZ58989.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429427658|gb|EKZ63738.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429435326|gb|EKZ71344.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429440889|gb|EKZ76865.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429444467|gb|EKZ80412.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429450771|gb|EKZ86663.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429456261|gb|EKZ92106.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430901625|gb|ELC23522.1| DNA polymerase III subunit epsilon [Escherichia coli KTE12]
gi|431207989|gb|ELF06219.1| DNA polymerase III subunit epsilon [Escherichia coli KTE142]
gi|431301656|gb|ELF90858.1| DNA polymerase III subunit epsilon [Escherichia coli KTE29]
gi|431313804|gb|ELG01761.1| DNA polymerase III subunit epsilon [Escherichia coli KTE48]
gi|431357255|gb|ELG43922.1| DNA polymerase III subunit epsilon [Escherichia coli KTE101]
gi|431357596|gb|ELG44262.1| DNA polymerase III subunit epsilon [Escherichia coli KTE91]
gi|431379949|gb|ELG64849.1| DNA polymerase III subunit epsilon [Escherichia coli KTE135]
gi|431388475|gb|ELG72198.1| DNA polymerase III subunit epsilon [Escherichia coli KTE136]
gi|431456552|gb|ELH36895.1| DNA polymerase III subunit epsilon [Escherichia coli KTE184]
gi|431475712|gb|ELH55516.1| DNA polymerase III subunit epsilon [Escherichia coli KTE203]
gi|431615674|gb|ELI84797.1| DNA polymerase III subunit epsilon [Escherichia coli KTE138]
gi|431722752|gb|ELJ86715.1| DNA polymerase III subunit epsilon [Escherichia coli KTE90]
Length = 246
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
Length = 375
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
+ F D+ETT + R I E G + + P + ++TLV P P I L+
Sbjct: 15 LVFVDLETTGGSSAEHR--ITEIGVVEIGPLGVS---TWTTLVNPGQSIPPFIQQLT--- 66
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GI+ D V +P+FA +A T+F+ L G+++ HN FD +R F G
Sbjct: 67 -GISDDMVRDAPSFASLAPTLFERLDGKLFVAHNA-SFDRGFLRAEFERAG 115
>gi|218557151|ref|YP_002390064.1| DNA polymerase III subunit epsilon [Escherichia coli S88]
gi|218688085|ref|YP_002396297.1| DNA polymerase III subunit epsilon [Escherichia coli ED1a]
gi|218698838|ref|YP_002406467.1| DNA polymerase III subunit epsilon [Escherichia coli IAI39]
gi|218703464|ref|YP_002410983.1| DNA polymerase III subunit epsilon [Escherichia coli UMN026]
gi|293403294|ref|ZP_06647385.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
gi|293408304|ref|ZP_06652143.1| DNA polymerase III [Escherichia coli B354]
gi|298378908|ref|ZP_06988789.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
gi|386597959|ref|YP_006099465.1| DNA polymerase III subunit epsilon [Escherichia coli IHE3034]
gi|386622623|ref|YP_006142351.1| DNA polymerase III subunit epsilon [Escherichia coli O7:K1 str.
CE10]
gi|417151556|ref|ZP_11991083.1| DNA polymerase III, epsilon subunit [Escherichia coli 1.2264]
gi|417585030|ref|ZP_12235812.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_C165-02]
gi|419937385|ref|ZP_14454289.1| DNA polymerase III subunit epsilon [Escherichia coli 576-1]
gi|419943214|ref|ZP_14459776.1| DNA polymerase III subunit epsilon [Escherichia coli HM605]
gi|422752624|ref|ZP_16806522.1| DNA polymerase III [Escherichia coli H252]
gi|422752887|ref|ZP_16806714.1| DNA polymerase III [Escherichia coli H263]
gi|442606049|ref|ZP_21020853.1| DNA polymerase III epsilon subunit [Escherichia coli Nissle 1917]
gi|218363920|emb|CAR01585.1| DNA polymerase III epsilon subunit [Escherichia coli S88]
gi|218368824|emb|CAR16572.1| DNA polymerase III epsilon subunit [Escherichia coli IAI39]
gi|218425649|emb|CAR06436.1| DNA polymerase III epsilon subunit [Escherichia coli ED1a]
gi|218430561|emb|CAR11427.1| DNA polymerase III epsilon subunit [Escherichia coli UMN026]
gi|221361649|emb|CAX20320.1| DNA polymerase III, epsilon subunit [Escherichia coli]
gi|291429147|gb|EFF02167.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
gi|291471482|gb|EFF13965.1| DNA polymerase III [Escherichia coli B354]
gi|294493054|gb|ADE91810.1| DNA polymerase III, epsilon subunit [Escherichia coli IHE3034]
gi|298280021|gb|EFI21525.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
gi|323948751|gb|EGB44651.1| DNA polymerase III [Escherichia coli H252]
gi|323958799|gb|EGB54498.1| DNA polymerase III [Escherichia coli H263]
gi|345341880|gb|EGW74279.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_C165-02]
gi|349736361|gb|AEQ11067.1| DNA polymerase III epsilon subunit [Escherichia coli O7:K1 str.
CE10]
gi|386159747|gb|EIH21561.1| DNA polymerase III, epsilon subunit [Escherichia coli 1.2264]
gi|388397994|gb|EIL58947.1| DNA polymerase III subunit epsilon [Escherichia coli 576-1]
gi|388421490|gb|EIL81104.1| DNA polymerase III subunit epsilon [Escherichia coli HM605]
gi|441712900|emb|CCQ06830.1| DNA polymerase III epsilon subunit [Escherichia coli Nissle 1917]
Length = 243
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
denitrificans ATCC 33394]
gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
denitrificans ATCC 33394]
Length = 245
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 29 ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIAD 86
++EF + + ++ +LH Y + P I + + +GIT D + P FAD+A
Sbjct: 26 MIEFAGLEMVNRQFTQNDLHLY---IHP--ERDIPAEATAVHGITLDDLADKPVFADVAQ 80
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT-IDSLALLTQRF-GRRAGD 144
+FD L G HN +FD + FA +G P + T +D+L + +R+ G++
Sbjct: 81 QIFDFLKGAELIIHNA-KFDVGFLNAEFARVGLPNIDSVCTVVDTLEMARKRYPGQKN-- 137
Query: 145 MKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFLESSLPDIFTVNSWVSPNAT 202
+ +L T G+ ++ R L ++ E+L Y A + SL D F ++ VS
Sbjct: 138 -SLDALCTRLGV-DRSRRVLHGALIDCELLGGVYLAMTRG-QFSLDDAFAADNAVSAGNA 194
Query: 203 TRS 205
+
Sbjct: 195 AKG 197
>gi|377820115|ref|YP_004976486.1| DNA polymerase III subunit epsilon [Burkholderia sp. YI23]
gi|357934950|gb|AET88509.1| DNA polymerase III, epsilon subunit [Burkholderia sp. YI23]
Length = 381
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
IAF D+ETT T R I E G + V P + + +++LV P P I + + G
Sbjct: 16 IAFVDLETTGGTFGVDR--ITEIGIVEVGPSGVSQ---WTSLVNPQKP--IPAFVQQLTG 68
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-RPAPE 123
IT V +PTF +A + + ++GR++ HN FD ++ F +G R AP+
Sbjct: 69 ITDAMVRDAPTFEQLAADLLERMNGRLFVAHNA-HFDHGFLKGEFRRLGLRFAPD 122
>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
H3081.97]
gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
gi|375285515|ref|YP_005105954.1| DNA polymerase III subunit epsilon [Bacillus cereus NC7401]
gi|423353298|ref|ZP_17330925.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
IS075]
gi|423374588|ref|ZP_17351926.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
AND1407]
gi|423567509|ref|ZP_17543756.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A12]
gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
H3081.97]
gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH187]
gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
gi|358354042|dbj|BAL19214.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus
NC7401]
gi|401089938|gb|EJP98102.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
IS075]
gi|401093876|gb|EJQ01962.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
AND1407]
gi|401213568|gb|EJR20307.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A12]
Length = 315
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P+ I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PDRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G P P+ K ID++ L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLGLPEPQNK-VIDTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA +
Sbjct: 164 VYQKCAFI 171
>gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|374999998|ref|ZP_09724338.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|416424522|ref|ZP_11691703.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416430793|ref|ZP_11695137.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416439917|ref|ZP_11700498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416444725|ref|ZP_11703958.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416453930|ref|ZP_11710004.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416458403|ref|ZP_11712922.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416469920|ref|ZP_11718661.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416478203|ref|ZP_11721671.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416484184|ref|ZP_11723980.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416503146|ref|ZP_11732885.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416510655|ref|ZP_11737253.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416513351|ref|ZP_11737917.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416526476|ref|ZP_11742381.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416536318|ref|ZP_11748385.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416542156|ref|ZP_11751326.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416553718|ref|ZP_11757847.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416561874|ref|ZP_11761765.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416568036|ref|ZP_11764475.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416576505|ref|ZP_11769087.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416583903|ref|ZP_11773659.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416595252|ref|ZP_11781066.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416596423|ref|ZP_11781315.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416605572|ref|ZP_11787004.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416610286|ref|ZP_11789958.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416620853|ref|ZP_11795956.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416632788|ref|ZP_11801502.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416639943|ref|ZP_11804857.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416655695|ref|ZP_11812688.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416671107|ref|ZP_11820596.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416678278|ref|ZP_11822583.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416694074|ref|ZP_11826938.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416706635|ref|ZP_11831824.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416713050|ref|ZP_11836692.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416719619|ref|ZP_11841475.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416723756|ref|ZP_11844422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416734338|ref|ZP_11850993.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416739631|ref|ZP_11853948.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416745454|ref|ZP_11857386.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416764569|ref|ZP_11868173.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416766978|ref|ZP_11869594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|418484421|ref|ZP_13053419.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418507351|ref|ZP_13073674.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418514144|ref|ZP_13080355.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|353074686|gb|EHB40446.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|363549324|gb|EHL33681.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363557528|gb|EHL41733.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363562362|gb|EHL46461.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363565424|gb|EHL49460.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363568279|gb|EHL52267.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363573613|gb|EHL57491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363578138|gb|EHL61954.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366058665|gb|EHN22948.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366079964|gb|EHN43945.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366081419|gb|EHN45364.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
Length = 246
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|74310830|ref|YP_309249.1| DNA polymerase III subunit epsilon [Shigella sonnei Ss046]
gi|82542808|ref|YP_406755.1| DNA polymerase III subunit epsilon [Shigella boydii Sb227]
gi|157156660|ref|YP_001461381.1| DNA polymerase III subunit epsilon [Escherichia coli E24377A]
gi|157159676|ref|YP_001456994.1| DNA polymerase III subunit epsilon [Escherichia coli HS]
gi|187734104|ref|YP_001879012.1| DNA polymerase III subunit epsilon [Shigella boydii CDC 3083-94]
gi|191167032|ref|ZP_03028854.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
gi|193067693|ref|ZP_03048660.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
gi|194427534|ref|ZP_03060082.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
gi|194432694|ref|ZP_03064979.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
gi|209917402|ref|YP_002291486.1| DNA polymerase III subunit epsilon [Escherichia coli SE11]
gi|218552790|ref|YP_002385703.1| DNA polymerase III subunit epsilon [Escherichia coli IAI1]
gi|218693677|ref|YP_002401344.1| DNA polymerase III subunit epsilon [Escherichia coli 55989]
gi|260842441|ref|YP_003220219.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
str. 12009]
gi|260853420|ref|YP_003227311.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
11368]
gi|260866358|ref|YP_003232760.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H- str.
11128]
gi|293418309|ref|ZP_06660744.1| DNA polymerase III [Escherichia coli B088]
gi|332281343|ref|ZP_08393756.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
gi|383176818|ref|YP_005454823.1| DNA polymerase III subunit epsilon [Shigella sonnei 53G]
gi|386698708|ref|YP_006162545.1| DNA polymerase III subunit epsilon [Escherichia coli KO11FL]
gi|407467666|ref|YP_006785892.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407483617|ref|YP_006780766.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484157|ref|YP_006771703.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414574401|ref|ZP_11431615.1| DNA polymerase III, epsilon subunit [Shigella sonnei 3233-85]
gi|415801848|ref|ZP_11499771.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010]
gi|415814314|ref|ZP_11505934.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68]
gi|415824026|ref|ZP_11512401.1| DNA polymerase III, epsilon subunit [Escherichia coli OK1180]
gi|415832612|ref|ZP_11518003.1| DNA polymerase III, epsilon subunit [Escherichia coli OK1357]
gi|415850027|ref|ZP_11527059.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G]
gi|416294777|ref|ZP_11650991.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83]
gi|416342456|ref|ZP_11676687.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B]
gi|417126568|ref|ZP_11974122.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0246]
gi|417133945|ref|ZP_11978730.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.0588]
gi|417168450|ref|ZP_12000901.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0741]
gi|417174878|ref|ZP_12004674.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.2608]
gi|417181961|ref|ZP_12008797.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0624]
gi|417190922|ref|ZP_12013518.1| DNA polymerase III, epsilon subunit [Escherichia coli 4.0522]
gi|417225033|ref|ZP_12028324.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.154]
gi|417246750|ref|ZP_12039851.1| DNA polymerase III, epsilon subunit [Escherichia coli 9.0111]
gi|417295403|ref|ZP_12082656.1| DNA polymerase III, epsilon subunit [Escherichia coli 900105 (10e)]
gi|417579432|ref|ZP_12230257.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_B2F1]
gi|417589832|ref|ZP_12240553.1| DNA polymerase III, epsilon subunit [Escherichia coli 2534-86]
gi|417595061|ref|ZP_12245737.1| DNA polymerase III, epsilon subunit [Escherichia coli 3030-1]
gi|417600477|ref|ZP_12251063.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_94C]
gi|417606142|ref|ZP_12256674.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_DG131-3]
gi|417621445|ref|ZP_12271775.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_H.1.8]
gi|417665282|ref|ZP_12314850.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_O31]
gi|417671087|ref|ZP_12320587.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74]
gi|417682634|ref|ZP_12331988.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74]
gi|417688023|ref|ZP_12337273.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82]
gi|417803556|ref|ZP_12450594.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
LB226692]
gi|417831320|ref|ZP_12477845.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
01-09591]
gi|417868379|ref|ZP_12513407.1| dnaQ [Escherichia coli O104:H4 str. C227-11]
gi|418261714|ref|ZP_12883636.1| DNA polymerase III, epsilon subunit [Shigella sonnei str. Moseley]
gi|418942829|ref|ZP_13496075.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H43 str.
T22]
gi|419195172|ref|ZP_13738586.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8A]
gi|419206742|ref|ZP_13749880.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8B]
gi|419207164|ref|ZP_13750294.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8C]
gi|419213587|ref|ZP_13756621.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8D]
gi|419219430|ref|ZP_13762389.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8E]
gi|419224897|ref|ZP_13767790.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9A]
gi|419230762|ref|ZP_13773557.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9B]
gi|419236028|ref|ZP_13778780.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9C]
gi|419241614|ref|ZP_13784265.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9D]
gi|419247018|ref|ZP_13789636.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9E]
gi|419257106|ref|ZP_13799605.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10A]
gi|419258795|ref|ZP_13801258.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10B]
gi|419269545|ref|ZP_13811886.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10C]
gi|419270486|ref|ZP_13812819.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10D]
gi|419276319|ref|ZP_13818589.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10E]
gi|419281847|ref|ZP_13824071.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10F]
gi|419290572|ref|ZP_13832661.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11A]
gi|419293022|ref|ZP_13835083.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11B]
gi|419298403|ref|ZP_13840427.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11C]
gi|419304722|ref|ZP_13846638.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11D]
gi|419309779|ref|ZP_13851656.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11E]
gi|419315056|ref|ZP_13856889.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12A]
gi|419320858|ref|ZP_13862602.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12B]
gi|419327057|ref|ZP_13868693.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12C]
gi|419332473|ref|ZP_13874039.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12D]
gi|419339461|ref|ZP_13880938.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12E]
gi|419343870|ref|ZP_13885255.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13A]
gi|419348302|ref|ZP_13889656.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13B]
gi|419353205|ref|ZP_13894492.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13C]
gi|419358549|ref|ZP_13899780.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13D]
gi|419363562|ref|ZP_13904745.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13E]
gi|419368493|ref|ZP_13909626.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14A]
gi|419373650|ref|ZP_13914711.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14B]
gi|419379079|ref|ZP_13920060.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14C]
gi|419384333|ref|ZP_13925240.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14D]
gi|419389630|ref|ZP_13930472.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15A]
gi|419394803|ref|ZP_13935589.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15B]
gi|419401686|ref|ZP_13942412.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15C]
gi|419405333|ref|ZP_13946037.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15D]
gi|419410844|ref|ZP_13951519.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15E]
gi|419806185|ref|ZP_14331300.1| DNA polymerase III, epsilon subunit [Escherichia coli AI27]
gi|419866131|ref|ZP_14388501.1| DNA polymerase III subunit epsilon [Escherichia coli O103:H25 str.
CVM9340]
gi|419871697|ref|ZP_14393748.1| DNA polymerase III subunit epsilon [Escherichia coli O103:H2 str.
CVM9450]
gi|419878418|ref|ZP_14399888.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9534]
gi|419884843|ref|ZP_14405719.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9545]
gi|419892666|ref|ZP_14412677.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9570]
gi|419896734|ref|ZP_14416396.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9574]
gi|419904437|ref|ZP_14423435.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM9942]
gi|419910528|ref|ZP_14429045.1| hypothetical protein ECO10026_29514 [Escherichia coli O26:H11 str.
CVM10026]
gi|419923486|ref|ZP_14441431.1| DNA polymerase III subunit epsilon [Escherichia coli 541-15]
gi|419927812|ref|ZP_14445539.1| DNA polymerase III subunit epsilon [Escherichia coli 541-1]
gi|420090763|ref|ZP_14602527.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9602]
gi|420097520|ref|ZP_14608818.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9634]
gi|420104734|ref|ZP_14615381.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9455]
gi|420111314|ref|ZP_14621151.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9553]
gi|420117697|ref|ZP_14627051.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10021]
gi|420123519|ref|ZP_14632407.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10030]
gi|420129489|ref|ZP_14638020.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10224]
gi|420135692|ref|ZP_14643771.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM9952]
gi|420323868|ref|ZP_14825658.1| DNA polymerase III, epsilon subunit [Shigella flexneri CCH060]
gi|420334475|ref|ZP_14836097.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-315]
gi|420345310|ref|ZP_14846743.1| DNA polymerase III, epsilon subunit [Shigella boydii 965-58]
gi|420355642|ref|ZP_14856700.1| DNA polymerase III, epsilon subunit [Shigella boydii 4444-74]
gi|420361196|ref|ZP_14862139.1| DNA polymerase III, epsilon subunit [Shigella sonnei 3226-85]
gi|420361791|ref|ZP_14862722.1| DNA polymerase III, epsilon subunit [Shigella sonnei 4822-66]
gi|420378538|ref|ZP_14878041.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 225-75]
gi|421680933|ref|ZP_16120773.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1485-80]
gi|422764643|ref|ZP_16818389.1| DNA polymerase III [Escherichia coli E1167]
gi|424751749|ref|ZP_18179775.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424766181|ref|ZP_18193539.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424772722|ref|ZP_18199812.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425376963|ref|ZP_18761386.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1865]
gi|425420810|ref|ZP_18802047.1| DNA polymerase III, epsilon subunit [Escherichia coli 0.1288]
gi|450209941|ref|ZP_21893999.1| DNA polymerase III subunit epsilon [Escherichia coli O08]
gi|73854307|gb|AAZ87014.1| DNA polymerase III epsilon subunit [Shigella sonnei Ss046]
gi|81244219|gb|ABB64927.1| DNA polymerase III epsilon subunit [Shigella boydii Sb227]
gi|157065356|gb|ABV04611.1| DNA polymerase III, epsilon subunit [Escherichia coli HS]
gi|157078690|gb|ABV18398.1| DNA polymerase III, epsilon subunit [Escherichia coli E24377A]
gi|187431096|gb|ACD10370.1| DNA polymerase III, epsilon subunit [Shigella boydii CDC 3083-94]
gi|190902925|gb|EDV62652.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
gi|192959105|gb|EDV89541.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
gi|194414304|gb|EDX30578.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
gi|194418956|gb|EDX35040.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
gi|209910661|dbj|BAG75735.1| DNA polymerase III epsilon subunit [Escherichia coli SE11]
gi|218350409|emb|CAU96094.1| DNA polymerase III epsilon subunit [Escherichia coli 55989]
gi|218359558|emb|CAQ97098.1| DNA polymerase III epsilon subunit [Escherichia coli IAI1]
gi|257752069|dbj|BAI23571.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11
str. 11368]
gi|257757588|dbj|BAI29085.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
str. 12009]
gi|257762714|dbj|BAI34209.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H-
str. 11128]
gi|291324837|gb|EFE64252.1| DNA polymerase III [Escherichia coli B088]
gi|320186397|gb|EFW61129.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83]
gi|320201190|gb|EFW75773.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B]
gi|323160256|gb|EFZ46213.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010]
gi|323165914|gb|EFZ51696.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G]
gi|323171002|gb|EFZ56651.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68]
gi|323176527|gb|EFZ62119.1| DNA polymerase III, epsilon subunit [Escherichia coli OK1180]
gi|323181627|gb|EFZ67042.1| DNA polymerase III, epsilon subunit [Escherichia coli OK1357]
gi|324115459|gb|EGC09401.1| DNA polymerase III [Escherichia coli E1167]
gi|332093741|gb|EGI98796.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74]
gi|332095033|gb|EGJ00068.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82]
gi|332097572|gb|EGJ02551.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74]
gi|332103695|gb|EGJ07041.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
gi|340736007|gb|EGR65060.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
01-09591]
gi|340741832|gb|EGR75975.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
LB226692]
gi|341921668|gb|EGT71265.1| dnaQ [Escherichia coli O104:H4 str. C227-11]
gi|345344400|gb|EGW76769.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_B2F1]
gi|345346190|gb|EGW78526.1| DNA polymerase III, epsilon subunit [Escherichia coli 2534-86]
gi|345354379|gb|EGW86603.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_94C]
gi|345363273|gb|EGW95416.1| DNA polymerase III, epsilon subunit [Escherichia coli 3030-1]
gi|345366211|gb|EGW98307.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_DG131-3]
gi|345386893|gb|EGX16725.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_H.1.8]
gi|375321859|gb|EHS67658.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H43 str.
T22]
gi|378040210|gb|EHW02683.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8B]
gi|378054177|gb|EHW16460.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8A]
gi|378063846|gb|EHW26009.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8C]
gi|378069633|gb|EHW31722.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8D]
gi|378073352|gb|EHW35404.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8E]
gi|378082878|gb|EHW44819.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9A]
gi|378083309|gb|EHW45243.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9B]
gi|378091090|gb|EHW52923.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9C]
gi|378095371|gb|EHW57158.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9D]
gi|378097238|gb|EHW58995.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10A]
gi|378103698|gb|EHW65363.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9E]
gi|378106890|gb|EHW68517.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10C]
gi|378118161|gb|EHW79669.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10B]
gi|378121431|gb|EHW82882.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10D]
gi|378128346|gb|EHW89728.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11A]
gi|378134508|gb|EHW95829.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10E]
gi|378140492|gb|EHX01716.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10F]
gi|378147133|gb|EHX08281.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11B]
gi|378153697|gb|EHX14778.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11D]
gi|378157398|gb|EHX18430.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11C]
gi|378161502|gb|EHX22478.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11E]
gi|378175889|gb|EHX36700.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12B]
gi|378176553|gb|EHX37359.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12A]
gi|378177460|gb|EHX38254.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12C]
gi|378190739|gb|EHX51320.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13A]
gi|378190927|gb|EHX51503.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12E]
gi|378192108|gb|EHX52674.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12D]
gi|378205527|gb|EHX65940.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13B]
gi|378208114|gb|EHX68498.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13D]
gi|378209457|gb|EHX69828.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13C]
gi|378220229|gb|EHX80493.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13E]
gi|378223137|gb|EHX83366.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14A]
gi|378227205|gb|EHX87378.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14B]
gi|378234224|gb|EHX94302.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14C]
gi|378237684|gb|EHX97706.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14D]
gi|378246071|gb|EHY06007.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15A]
gi|378248613|gb|EHY08526.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15C]
gi|378252323|gb|EHY12216.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15B]
gi|378257722|gb|EHY17558.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15D]
gi|378261516|gb|EHY21309.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15E]
gi|383390235|gb|AFH15193.1| DNA polymerase III subunit epsilon [Escherichia coli KO11FL]
gi|384470802|gb|EIE54898.1| DNA polymerase III, epsilon subunit [Escherichia coli AI27]
gi|386144818|gb|EIG91282.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0246]
gi|386151799|gb|EIH03088.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.0588]
gi|386170498|gb|EIH42551.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0741]
gi|386177570|gb|EIH55049.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.2608]
gi|386184950|gb|EIH67686.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0624]
gi|386191894|gb|EIH80635.1| DNA polymerase III, epsilon subunit [Escherichia coli 4.0522]
gi|386200081|gb|EIH99072.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.154]
gi|386209378|gb|EII19865.1| DNA polymerase III, epsilon subunit [Escherichia coli 9.0111]
gi|386261022|gb|EIJ16490.1| DNA polymerase III, epsilon subunit [Escherichia coli 900105 (10e)]
gi|388335221|gb|EIL01793.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9534]
gi|388335841|gb|EIL02391.1| DNA polymerase III subunit epsilon [Escherichia coli O103:H25 str.
CVM9340]
gi|388336595|gb|EIL03133.1| DNA polymerase III subunit epsilon [Escherichia coli O103:H2 str.
CVM9450]
gi|388347212|gb|EIL12898.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9570]
gi|388352823|gb|EIL17909.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9545]
gi|388357058|gb|EIL21677.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9574]
gi|388367555|gb|EIL31228.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM9942]
gi|388371450|gb|EIL34928.1| hypothetical protein ECO10026_29514 [Escherichia coli O26:H11 str.
CVM10026]
gi|388393749|gb|EIL55104.1| DNA polymerase III subunit epsilon [Escherichia coli 541-15]
gi|388406698|gb|EIL67089.1| DNA polymerase III subunit epsilon [Escherichia coli 541-1]
gi|391257743|gb|EIQ16853.1| DNA polymerase III, epsilon subunit [Shigella flexneri CCH060]
gi|391268166|gb|EIQ27094.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-315]
gi|391271659|gb|EIQ30529.1| DNA polymerase III, epsilon subunit [Shigella boydii 4444-74]
gi|391276593|gb|EIQ35362.1| DNA polymerase III, epsilon subunit [Shigella boydii 965-58]
gi|391277516|gb|EIQ36255.1| DNA polymerase III, epsilon subunit [Shigella sonnei 3226-85]
gi|391289986|gb|EIQ48466.1| DNA polymerase III, epsilon subunit [Shigella sonnei 3233-85]
gi|391297248|gb|EIQ55306.1| DNA polymerase III, epsilon subunit [Shigella sonnei 4822-66]
gi|391307294|gb|EIQ65031.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 225-75]
gi|394382547|gb|EJE60180.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10224]
gi|394384027|gb|EJE61601.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9634]
gi|394385324|gb|EJE62861.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9602]
gi|394398560|gb|EJE74725.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9553]
gi|394401791|gb|EJE77564.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10021]
gi|394403133|gb|EJE78802.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9455]
gi|394416828|gb|EJE90595.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10030]
gi|394419614|gb|EJE93200.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM9952]
gi|397787073|gb|EJK97903.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_O31]
gi|397903433|gb|EJL19731.1| DNA polymerase III, epsilon subunit [Shigella sonnei str. Moseley]
gi|404342085|gb|EJZ68477.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1485-80]
gi|406779319|gb|AFS58743.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055914|gb|AFS75965.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2011C-3493]
gi|407063701|gb|AFS84748.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408310853|gb|EKJ27893.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1865]
gi|408348179|gb|EKJ62296.1| DNA polymerase III, epsilon subunit [Escherichia coli 0.1288]
gi|421934769|gb|EKT92516.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421937813|gb|EKT95410.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421938962|gb|EKT96494.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CFSAN001629]
gi|449323382|gb|EMD13342.1| DNA polymerase III subunit epsilon [Escherichia coli O08]
Length = 243
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1]
gi|237875965|gb|ACR28298.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1]
Length = 240
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARAGDR--IIEIGCVEMLNRRLTGNNLHFYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA+IA + D + G HN FD I +G P G
Sbjct: 58 GLTTEFLSDKPKFAEIAQALCDFVRGGELIIHNA-PFDIGFIDAELERLGMPPLLEHCNG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+L F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDTLVQAKSMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC
BAA-894]
gi|389842119|ref|YP_006344203.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ES15]
gi|424798123|ref|ZP_18223665.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 696]
gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894]
gi|387852595|gb|AFK00693.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ES15]
gi|423233844|emb|CCK05535.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 696]
Length = 243
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFMV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + +++ P F D+ D D + G HN FD + F + R P+ +
Sbjct: 66 HGISDEFLMNKPVFGDVVDDFLDYIRGAELVIHNA-SFDIGFMDYEFGMLNRGIPKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|345850922|ref|ZP_08803909.1| DNA polymerase III subunit epsilon [Streptomyces zinciresistens
K42]
gi|345637579|gb|EGX59099.1| DNA polymerase III subunit epsilon [Streptomyces zinciresistens
K42]
Length = 331
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A DVETT R + + A+ + E ++ TLV DPE V +G+
Sbjct: 24 AVVDVETTGLARDDR----IVSAAVYRLDARGEVEDHWYTLV---DPERDPG-PVWIHGL 75
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T +A+ +P F ++A+ L R+ HN + FD I +A R AP + + +
Sbjct: 76 TSEALEGAPLFHEVAEDFSARLADRVLVAHNAV-FDWQMIAREYARAERRAPV-RQRLCT 133
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
+A L++ G + K+ SLA +FG+ Q + H +LDD R+ E +
Sbjct: 134 IA-LSKELGLPLPNHKLESLAAHFGVVQRRAHHALDDARVLAEAFR 178
>gi|385332784|ref|YP_005886735.1| DNA polymerase III subunit epsilon [Marinobacter adhaerens HP15]
gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [Marinobacter adhaerens HP15]
Length = 486
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 19/173 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
AF D+ETT R I E G + + E + + TL+ P IS G
Sbjct: 13 FAFLDIETTGGNSARDR--ITEIG--IRFWRAGEVVGEWQTLLNPETR--ISPFIENFTG 66
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
I+ + V +P F ++AD + L G+++ HN RFD I+ F +GR
Sbjct: 67 ISNEMVADAPLFEEVADELEAQLKGKVFVAHNA-RFDYGFIKSEFRRLGR-------LFS 118
Query: 130 SLALLTQRFGRRA----GDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLKYC 177
+ L T + RR M +L GL + Q HR++ DV L ++
Sbjct: 119 AKVLCTVKLSRRLYPEFRRHNMDALIARHGLARVQRHRAMGDVSAMLAFFEHA 171
>gi|215485371|ref|YP_002327802.1| DNA polymerase III subunit epsilon [Escherichia coli O127:H6 str.
E2348/69]
gi|312964723|ref|ZP_07778974.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
gi|417754058|ref|ZP_12402153.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2B]
gi|418995281|ref|ZP_13542900.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1A]
gi|419000413|ref|ZP_13547975.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1B]
gi|419005950|ref|ZP_13553406.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1C]
gi|419011773|ref|ZP_13559142.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1D]
gi|419016717|ref|ZP_13564043.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1E]
gi|419022298|ref|ZP_13569546.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2A]
gi|419027224|ref|ZP_13574424.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2C]
gi|419033201|ref|ZP_13580299.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2D]
gi|419038006|ref|ZP_13585066.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2E]
gi|425276090|ref|ZP_18667439.1| DNA polymerase III, epsilon subunit [Escherichia coli ARS4.2123]
gi|425298388|ref|ZP_18688442.1| DNA polymerase III, epsilon subunit [Escherichia coli 07798]
gi|215263443|emb|CAS07763.1| DNA polymerase III, epsilon subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|312290744|gb|EFR18622.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
gi|377850223|gb|EHU15190.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1A]
gi|377850751|gb|EHU15706.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1C]
gi|377853903|gb|EHU18793.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1B]
gi|377864496|gb|EHU29292.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1D]
gi|377866691|gb|EHU31455.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1E]
gi|377868780|gb|EHU33507.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2A]
gi|377879004|gb|EHU43577.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2B]
gi|377883620|gb|EHU48138.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2D]
gi|377885726|gb|EHU50217.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2C]
gi|377898250|gb|EHU62610.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2E]
gi|408207518|gb|EKI32256.1| DNA polymerase III, epsilon subunit [Escherichia coli ARS4.2123]
gi|408221906|gb|EKI45829.1| DNA polymerase III, epsilon subunit [Escherichia coli 07798]
Length = 243
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAT-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|395789047|ref|ZP_10468577.1| DNA polymerase III, epsilon subunit [Bartonella taylorii 8TBB]
gi|395431181|gb|EJF97208.1| DNA polymerase III, epsilon subunit [Bartonella taylorii 8TBB]
Length = 235
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 8/162 (4%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD ETT + R I+E G + + + L H + + P +I V +G+T
Sbjct: 6 FDTETTGLDKEKDR--IIEIGCVEMIDRYLTG-HRFHVYLNPQGV-IIPDEVVAIHGLTN 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+ + + F+DIAD + ++G HN FD + + +P +D+LA
Sbjct: 62 ERLKNEKIFSDIADEFLEFINGATMIAHNA-SFDIGFLNAELERVNKPLISVDNILDTLA 120
Query: 133 LLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+ ++F G + L FG+ +HR L ++ E+L
Sbjct: 121 MARRKFP--MGPNSLDVLCKRFGI-DNSHRVLHGALLDAEIL 159
>gi|423138814|ref|ZP_17126452.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051368|gb|EHY69259.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 246
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|145579465|pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The
Proofread Exonuclease Subunit Of E. Coli Dna Polymerase
Iii
Length = 194
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPE-----AFGV 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNA-AFDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARKMFPGKR 145
>gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|375113135|ref|ZP_09758305.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic
proofreading function [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 246
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|417627110|ref|ZP_12277359.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_MHI813]
gi|345378684|gb|EGX10609.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_MHI813]
Length = 243
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
[Mycobacterium tuberculosis EAS054]
gi|289696427|gb|EFD63856.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
[Mycobacterium tuberculosis EAS054]
Length = 330
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVA-FDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DD R+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|386617716|ref|YP_006137296.1| DNA polymerase III subunit epsilon [Escherichia coli NA114]
gi|387828278|ref|YP_003348215.1| DNA polymerase III epsilon subunit [Escherichia coli SE15]
gi|417660843|ref|ZP_12310424.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86]
gi|281177435|dbj|BAI53765.1| DNA polymerase III epsilon subunit [Escherichia coli SE15]
gi|330910061|gb|EGH38571.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86]
gi|333968217|gb|AEG35022.1| DNA polymerase III subunit epsilon [Escherichia coli NA114]
Length = 243
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T46]
gi|289414065|gb|EFD11305.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T46]
Length = 319
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVA-FDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DD R+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|403069741|ref|ZP_10911073.1| hypothetical protein ONdio_09112 [Oceanobacillus sp. Ndiop]
Length = 204
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 36 LVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGR 95
LV + E + Y +L+ P S + +GI+ + V+ +PTFA++ T+ L
Sbjct: 23 LVVANEHEIIDEYYSLINPLTG--FCSFNTYIHGISEEDVIDAPTFAELWPTLQPYLMNN 80
Query: 96 IWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL--LTQRFGRRAGDMKMASLATY 153
+ HN FD + IR P P +D L ++Q+ + K+ +LA +
Sbjct: 81 LVIAHNA-SFDMSVIRNTLDFFKLPYP----IMDYLCTVKISQQIWPELENHKLNTLAAH 135
Query: 154 FGLGQQTHRSLDDVRMNLEVL 174
G+ + H +L+D R+ +VL
Sbjct: 136 HGILFEHHHALEDARVAAKVL 156
>gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T92]
gi|289688816|gb|EFD56245.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T92]
Length = 329
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVA-FDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DD R+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|198282704|ref|YP_002219025.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665705|ref|YP_002424896.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247225|gb|ACH82818.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517918|gb|ACK78504.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 248
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 18/225 (8%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKLEELH--NYSTLVRPADPELISSLSVRCNG 69
D ETT + + G R ++E GA+ + +++ E + Y R +DPE ++R +G
Sbjct: 8 LDTETTGIDWKQGHR--VIEIGAVELIDRRVTEAYYQQYLNPQRSSDPE-----ALRIHG 60
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + P FA++AD + L HN FD + G+ AP + +D
Sbjct: 61 LTDEFLQDQPGFAEVADAFLEFLGDAELIIHNA-PFDLGFLNHELQLAGK-APLRQAVMD 118
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPD 189
+LA +R + D+ SL + + + +HR L ++ +L L + D
Sbjct: 119 TLADARRRHPGQKNDLN--SLCRRYSV-ENSHRELHGALLDTRIL--AEVYLAMTGGQVD 173
Query: 190 IFTVNSWVSPNATTRSRSNAKS-SPEGTSQNLSTPSSKFKFENAS 233
+ + +A T RS EG LS P + AS
Sbjct: 174 MMGMLGAAGGSAATEMRSAGDDRRSEGIPAALSRPRGPLRVIRAS 218
>gi|429218937|ref|YP_007180581.1| DNA polymerase III subunit epsilon family exonuclease [Deinococcus
peraridilitoris DSM 19664]
gi|429129800|gb|AFZ66815.1| exonuclease, DNA polymerase III, epsilon subunit family
[Deinococcus peraridilitoris DSM 19664]
Length = 188
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 10/165 (6%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
E FD+ETT P ++ AI+E GA+ V +L E + LV P I + R +
Sbjct: 12 EYVVFDLETT-GLSP-EKDAIIEIGAMYVRDGELIEAPLFHALVNPERE--IPWYASRVH 67
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI V +P A++ D + R HNI FD +R A G P+ I
Sbjct: 68 GIRNAHVAGAPKLAEVLPAFLDFVGDRAVVAHNI-GFDAGFMRMATRRHG-LLWTPREEI 125
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQT---HRSLDDVRMN 170
++ L + F R K+ LA+ FGL + HRSL DVR+
Sbjct: 126 CTVQLSRRAFPRERSH-KLDLLASRFGLSFEEGGRHRSLGDVRVT 169
>gi|410634945|ref|ZP_11345570.1| DNA polymerase III subunit epsilon [Glaciecola lipolytica E3]
gi|410145519|dbj|GAC12775.1| DNA polymerase III subunit epsilon [Glaciecola lipolytica E3]
Length = 711
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 23/171 (13%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCN 68
A D+ETT R I E G V K+ + + TL+ P P+ I+ L+
Sbjct: 547 AVVDIETTGGRANQHR--ITEIGIAKVVGDKV--IDTWQTLINPQRHIPQKITQLT---- 598
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI + V +P F +IA T+ + L ++ HN+ FD IR F + + PK
Sbjct: 599 GIDDEMVADAPLFVEIAQTLRNYLADCVFVAHNV-NFDYGFIRAEFERLEQNFRMPK--- 654
Query: 129 DSLALLTQRFGRRAG----DMKMASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
L T R R+A +A+L +FG+ + HR+L D + E+L
Sbjct: 655 ----LCTVREMRKAVPGLPSYSLANLTRHFGIDMTRHHRALSDAQAAAELL 701
>gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
43183]
gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
43183]
Length = 605
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ V + E L ++TLV P P I GIT V ++P + +
Sbjct: 60 AITEVGAVKV--RGGERLGEFATLVDPGVP--IPPFITALTGITQQMVTNAPPMSAVLPA 115
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGR-RAGDMK 146
+ G + HN FD +R A P P +D+ L + R + K
Sbjct: 116 FLEFARGCVLVAHNAP-FDIGFLRAACTAHDHPWPAFP-VVDTADLARRVLTREEVPNCK 173
Query: 147 MASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+A+LA YF G + HR+L D R ++VL
Sbjct: 174 LATLARYFRTGTEPCHRALADARATVDVL 202
>gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|374979753|ref|ZP_09721085.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|375117697|ref|ZP_09762864.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375122373|ref|ZP_09767537.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|378956354|ref|YP_005213841.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|378960777|ref|YP_005218263.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|378982801|ref|YP_005245956.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|379699480|ref|YP_005241208.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383495082|ref|YP_005395771.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|386590150|ref|YP_006086550.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|409248685|ref|YP_006884525.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|417324129|ref|ZP_12110463.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|417339423|ref|ZP_12120990.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|417371048|ref|ZP_12141731.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|418761040|ref|ZP_13317189.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418767868|ref|ZP_13323925.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418770914|ref|ZP_13326933.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418775277|ref|ZP_13331236.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418781542|ref|ZP_13337424.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418782704|ref|ZP_13338564.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418791187|ref|ZP_13346950.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418793687|ref|ZP_13349413.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418799733|ref|ZP_13355399.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418803919|ref|ZP_13359532.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418807406|ref|ZP_13362964.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418811947|ref|ZP_13367471.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418824465|ref|ZP_13379825.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418831583|ref|ZP_13386533.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418835585|ref|ZP_13390476.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418838568|ref|ZP_13393410.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418845953|ref|ZP_13400730.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418848772|ref|ZP_13403507.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418855004|ref|ZP_13409667.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418858354|ref|ZP_13412970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418864095|ref|ZP_13418630.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418869421|ref|ZP_13423857.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419790870|ref|ZP_14316537.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419794165|ref|ZP_14319781.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421882985|ref|ZP_16314232.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|353579778|gb|EHC41237.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|353609171|gb|EHC62555.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|357206965|gb|AET55011.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|357960391|gb|EHJ84247.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|374354649|gb|AEZ46410.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|379987407|emb|CCF86505.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|380461903|gb|AFD57306.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|383797194|gb|AFH44276.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392612749|gb|EIW95217.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392616255|gb|EIW98690.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392733088|gb|EIZ90292.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392735923|gb|EIZ93092.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392741445|gb|EIZ98548.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392746874|gb|EJA03878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392748780|gb|EJA05762.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392755276|gb|EJA12186.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392759519|gb|EJA16371.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392763367|gb|EJA20174.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392764051|gb|EJA20857.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392772013|gb|EJA28721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392776687|gb|EJA33373.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392778669|gb|EJA35340.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392798480|gb|EJA54751.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392802860|gb|EJA59061.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392811955|gb|EJA67953.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392814394|gb|EJA70345.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392822119|gb|EJA77931.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392822553|gb|EJA78363.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392823178|gb|EJA78981.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392831356|gb|EJA86989.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392832756|gb|EJA88372.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392836569|gb|EJA92151.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
Length = 246
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|437733986|ref|ZP_20832138.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435286911|gb|ELO64146.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
Length = 250
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|24987377|pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5
gi|24987378|pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8
gi|119390109|pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
Complex
gi|119390111|pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
Complex
gi|340707380|pdb|2XY8|A Chain A, Paramagnetic-Based Nmr Structure Of The Complex Between
The N-Terminal Epsilon Domain And The Theta Domain Of
The Dna Polymerase Iii
Length = 186
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPE-----AFGV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNA-AFDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|301021445|ref|ZP_07185469.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
gi|300398081|gb|EFJ81619.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
Length = 246
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARRMFPGKR 145
>gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
44385]
gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
44385]
Length = 616
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT + R I+E GA+ + EE+ +ST V P LI L GI+ D
Sbjct: 38 DLETTGLSAHEDR--IIEIGAVKI--HGGEEISRFSTFVDPG--RLIPPLITNITGISDD 91
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V +P A + G + HN RFD ++ A P+P + +L L
Sbjct: 92 DVNGAPKEAQAVKDFLEFARGTVLVAHNA-RFDIGFLQAASMRAHITWPQPT-HLCTLVL 149
Query: 134 LTQRFGRRA-GDMKMASLATYF-GLGQQTHRSLDDVRMNLEVLK 175
R A G K++SLA +F THR+LDD + V
Sbjct: 150 ARTMLDRCAVGSFKLSSLARHFHATTTPTHRALDDALATVTVFH 193
>gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon [Mycobacterium bovis AF2122/97]
gi|121639627|ref|YP_979851.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224992123|ref|YP_002646812.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289445310|ref|ZP_06435054.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
CPHL_A]
gi|339633703|ref|YP_004725345.1| DNA polymerase III subunit epsilon [Mycobacterium africanum
GM041182]
gi|378773490|ref|YP_005173223.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Mexico]
gi|386006518|ref|YP_005924797.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
RGTB423]
gi|433628854|ref|YP_007262483.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140060008]
gi|433643901|ref|YP_007289660.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070008]
gi|449065826|ref|YP_007432909.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Korea 1168P]
gi|31620481|emb|CAD95924.1| PUTATIVE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
bovis AF2122/97]
gi|121495275|emb|CAL73761.1| Putative dna polymerase III (epsilon subunit) dnaQ [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|224775238|dbj|BAH28044.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289418268|gb|EFD15469.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
CPHL_A]
gi|339333059|emb|CCC28789.1| putative DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium
africanum GM041182]
gi|341603648|emb|CCC66329.1| putative DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
bovis BCG str. Moreau RDJ]
gi|356595811|gb|AET21040.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Mexico]
gi|380727006|gb|AFE14801.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
RGTB423]
gi|432156460|emb|CCK53718.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140060008]
gi|432160449|emb|CCK57774.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070008]
gi|449034334|gb|AGE69761.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 329
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVA-FDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DD R+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191]
gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191]
Length = 201
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 9 EIAFFDVETT-VPTRPGQRF---AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
+ AF D ETT + G R A++ GA++ + Y T++ P +IS
Sbjct: 12 KFAFLDTETTGLSPYDGARLCEIAVITNGALIAKSE-------YGTIINPRC--VISQEV 62
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
+ +GIT + +P F DIA + +L + HN FD + FA G P+
Sbjct: 63 INIHGITNEMAAQAPYFEDIAPLLIGLLTDSVIVCHN-ADFDIPFLAAEFARCGLRMPQ- 120
Query: 125 KGTIDSLALLTQRFGRRAGDMK---MASLATYFGLGQQT-HRSLDDVRMNLEVLKY 176
++ L T +F R+ G+ K + + + GL + HR++ D +M +V +
Sbjct: 121 -----TVILDTLKFARKNGNFKKNNLGFIVSELGLSNEGWHRAMADAKMTEKVFYH 171
>gi|423714747|ref|ZP_17688971.1| DNA polymerase III, epsilon subunit [Bartonella elizabethae F9251]
gi|395430966|gb|EJF96994.1| DNA polymerase III, epsilon subunit [Bartonella elizabethae F9251]
Length = 235
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE--LISSLSVRCN 68
FD ETT + R I+E G + + + L + H Y +PE LI V +
Sbjct: 6 FDTETTGLDKEKDR--IIEIGCVEMVDRYLTGRQFHVY------LNPEGVLIPDEVVAIH 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
G+T + + + +F+DI D + ++G HN FD I + +P +
Sbjct: 58 GLTNERLKNEKSFSDIVDEFLEFINGATMIAHNA-SFDIGFINAELKRVNKPLISVDNIL 116
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ ++F G + L FG+ +HR L ++ E+L
Sbjct: 117 DTLAMARRKFP--MGPNSLDILCKRFGI-DNSHRVLHGALLDAEIL 159
>gi|417884939|ref|ZP_12529100.1| exonuclease DnaQ family/helicase DinG family [Lactobacillus oris
F0423]
gi|341596895|gb|EGS39481.1| exonuclease DnaQ family/helicase DinG family [Lactobacillus oris
F0423]
Length = 949
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 3 PTQDRSE--IAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL 59
P +DR+ + D+ETT G R I++ G +LV ++ ++++ T V P E
Sbjct: 10 PKRDRTAPIYSVVDLETTGTSVNHGDR--IIQIGCVLVQDGQV--INHFETKVNPR--EK 63
Query: 60 ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
I V+ GI V +P F D+A T++ +L G + HN+ FD + G
Sbjct: 64 IPRAVVQLTGIQDRDVRKAPLFEDVAGTIYSLLTGTTFVAHNV-NFDFPFLNAELERAGY 122
Query: 120 PAPEPKGTIDSLAL 133
P P P ID++ L
Sbjct: 123 P-PLPIKAIDTVTL 135
>gi|336123526|ref|YP_004565574.1| DNA polymerase III subunit epsilon [Vibrio anguillarum 775]
gi|335341249|gb|AEH32532.1| DNA polymerase III, epsilon chain [Vibrio anguillarum 775]
Length = 247
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 10 IAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
I D ETT R G + I+E GA+ + +KL H + ++P D E I ++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIVEIGAVEIINRKLTGRH-FHVYLKP-DRE-IQLEAI 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNI---LRFDCARIREAFAEIGRPAP 122
+GIT + ++ P + D+ D + G HN + F R+ A+IG+
Sbjct: 69 EIHGITDEFLMDKPQYRDVHQEFLDFIKGAELVAHNAPFDVGFMDYEFRKLDAKIGKTEQ 128
Query: 123 EPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
K T D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 129 YCKVT-DTLAMAKRIFPGKRN---NLDILCDRYGI-DNSHRTLHGALLDAEIL 176
>gi|313206803|ref|YP_004045980.1| DNA polymerase III subunit epsilon [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383486111|ref|YP_005395023.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|386321214|ref|YP_006017376.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
[Riemerella anatipestifer RA-GD]
gi|416109383|ref|ZP_11591342.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM]
gi|442313981|ref|YP_007355284.1| hypothetical protein G148_0285 [Riemerella anatipestifer RA-CH-2]
gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM]
gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
[Riemerella anatipestifer RA-GD]
gi|380460796|gb|AFD56480.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|441482904|gb|AGC39590.1| hypothetical protein G148_0285 [Riemerella anatipestifer RA-CH-2]
Length = 407
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 51 LVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCAR 109
+ +PE IS + GITP V ++P F +IA + +I G GHN+ FD
Sbjct: 36 FISMVNPEADISHFVQKLTGITPKMVKTAPKFHEIAKRIIEITEGSTLVGHNV-DFDYRM 94
Query: 110 IREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGL-GQQTHRSLDDVR 168
+R++F +G T+D++ L ++ + L G+ + HR+ D R
Sbjct: 95 LRQSFKRLGYHFSIE--TLDTIP-LAKKLIPNEESYSLGKLVKSLGIPLAEHHRASSDAR 151
Query: 169 MNLEVLKYCAT 179
L++ K T
Sbjct: 152 ATLDLFKLLMT 162
>gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
PB013-T2-3]
gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
PB013-T2-3]
Length = 949
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 3 PTQDRSE--IAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL 59
P +DR+ + D+ETT G R I++ G +LV ++ ++++ T V P E
Sbjct: 10 PKRDRTAPIYSVVDLETTGTSVNHGDR--IIQIGCVLVQDGQV--INHFETKVNPR--EK 63
Query: 60 ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
I V+ GI V +P F D+A T++ +L G + HN+ FD + G
Sbjct: 64 IPRAVVQLTGIQDRDVRKAPLFEDVAGTIYSLLTGTTFVAHNV-NFDFPFLNAELERAGY 122
Query: 120 PAPEPKGTIDSLAL 133
P P P ID++ L
Sbjct: 123 P-PLPIKAIDTVTL 135
>gi|340628685|ref|YP_004747137.1| putative DNA polymerase III [Mycobacterium canettii CIPT 140010059]
gi|340006875|emb|CCC46064.1| putative DNA polymerase III (epsilon subunit) DNAQ [Mycobacterium
canettii CIPT 140010059]
Length = 329
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVA-FDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DD R+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
Length = 653
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVET+ +R IL + P + YSTLV P DP V +G
Sbjct: 20 ALVDVETSGLI--ARRDRILSIAVLTFGPDGTQ-TGEYSTLVNPGCDPG-----PVHIHG 71
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +P F +A + +L R+ HN +FD + FA P + +
Sbjct: 72 LTAERLRDAPAFEQVAGRIGALLQDRVMVAHNA-QFDYDFLAHEFARARLCLPVNQ-RLC 129
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRM 169
+LA L +R A D+ +ASLA ++G+ Q + H +LDD R+
Sbjct: 130 TLA-LNRRVEPPAADLSLASLAAHYGVPQTRAHDALDDTRV 169
>gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
HTCC2207]
gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
HTCC2207]
Length = 528
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
++ D+ETT R I+E G +++ K+ L + + V P P I L+
Sbjct: 23 KMVLLDLETTGGKATHHR--IIEIGLLVIEQGKV--LERWQSFVDPETVLPPFIQKLT-- 76
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-RPAPEPK 125
GI P + +P F+++A+T+ L+ R HN RFD ++ F IG +P
Sbjct: 77 --GIAPSMLRGAPLFSEVAETLLTYLNDRTLVAHNA-RFDYGFLKNEFQRIGISYNAKPL 133
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRM 169
++ L +F R D + F L + HR+LDD M
Sbjct: 134 CSVKFSRSLYPQFKRHGLD----QIIKRFQLPIENRHRALDDAEM 174
>gi|437710186|ref|ZP_20826291.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435288959|gb|ELO65949.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
Length = 221
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|429082333|ref|ZP_19145408.1| DNA polymerase III epsilon subunit [Cronobacter condimenti 1330]
gi|426548943|emb|CCJ71449.1| DNA polymerase III epsilon subunit [Cronobacter condimenti 1330]
Length = 241
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFMV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + +++ P F D+ D D + G HN FD + F + R P+ +
Sbjct: 66 HGISDEFLLNKPVFGDVVDDFLDYIRGAELVIHNA-SFDIGFMDYEFGMLNRGIPKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|419917101|ref|ZP_14435376.1| DNA polymerase III subunit epsilon [Escherichia coli KD2]
gi|388394814|gb|EIL56068.1| DNA polymerase III subunit epsilon [Escherichia coli KD2]
Length = 246
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 69 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 128 CKVTDSLAVARRMFPGKR 145
>gi|357636454|ref|ZP_09134329.1| exonuclease [Streptococcus macacae NCTC 11558]
gi|357584908|gb|EHJ52111.1| exonuclease [Streptococcus macacae NCTC 11558]
Length = 299
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 25/145 (17%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPA---DPELISSLSVRCNGITPDAVVSSPTFADIA 85
++E G + + K+ + YS L++P DP I+SL+ GIT + V + P+ D+
Sbjct: 31 VIEIGILRIRDNKI--VGRYSQLIQPKYEIDP-FITSLT----GITNEMVANMPSILDVK 83
Query: 86 DTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR---- 141
+ V + I GHN FD + E F E+ +D+ + T +F R+
Sbjct: 84 EEVLAFIGDDIIIGHNT-SFDIRFLNEGFKEL----------LDNRYMDTIQFARKLYPE 132
Query: 142 AGDMKMASLATYFGLGQQTHRSLDD 166
+++ L Y GL HR++ D
Sbjct: 133 LKHYRLSDLTKYLGLYNNEHRAIAD 157
>gi|332298225|ref|YP_004440147.1| DNA polymerase III subunit epsilon [Treponema brennaborense DSM
12168]
gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
12168]
Length = 186
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD ETT +R ++E GAI + + Y L+ P P I + N IT
Sbjct: 26 FDTETTGLKPEYER--LIEIGAIRFDKNGI--IARYDILINPGKP--IPPGASAINNITD 79
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V + P + + + HN FD + + + G P D++
Sbjct: 80 DMVRNCPLIESVLPDFLTFVRDSVLVAHNA-GFDLSFVNKELERSGF-NPLKNNAADTVH 137
Query: 133 LLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYC 177
L RF + + K+ SLA YFG+ + HR+ DD R+ +EV C
Sbjct: 138 LARSRFPQLP-NHKLQSLAAYFGIDVRNAHRAEDDARVCMEVFLRC 182
>gi|416648318|ref|ZP_11808963.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416759300|ref|ZP_11864161.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|418486181|ref|ZP_13055153.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418493340|ref|ZP_13059808.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418497916|ref|ZP_13064331.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418504211|ref|ZP_13070569.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418525432|ref|ZP_13091412.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|452121435|ref|YP_007471683.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|366065515|gb|EHN29705.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366071053|gb|EHN35153.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366073693|gb|EHN37757.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366076798|gb|EHN40833.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366829312|gb|EHN56188.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372206201|gb|EHP19705.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|451910439|gb|AGF82245.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 243
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
Length = 375
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
+ F D+ETT + R I E G + + P + ++TLV P P I L+
Sbjct: 15 LVFVDLETTGGSTAEHR--ITEIGVVEIGPLGVS---TWTTLVNPGQSIPPFIQQLT--- 66
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GI+ D V +P+FA +A T+F+ L G+++ HN FD +R F G
Sbjct: 67 -GISDDMVRDAPSFASLAPTLFERLDGKLFVAHNA-SFDRGFLRAEFERAG 115
>gi|406982919|gb|EKE04180.1| hypothetical protein ACD_20C00098G0008 [uncultured bacterium]
Length = 567
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 20/197 (10%)
Query: 1 MGPTQDRSEIAF--FDVETT---VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA 55
+ P + I F FD ETT + G I++ GA+ + P ++ + S L +
Sbjct: 182 ISPETGKLNINFIVFDTETTGVNFDPKKGPVDKIIQIGAVKIMPGG--KIEHESVLNQLV 239
Query: 56 DPEL-ISSLSVRCNGITPDAVVSSPTFADI-ADTVFDILHGRIWAGHNILRFDCARIREA 113
+PE+ IS + + + IT + V +PT + + + L + +N +FD + A
Sbjct: 240 NPEMEISKEATKVHHITNEEVRKNPTIHTLLKNFTENYLKDNLIVAYNA-KFDIPMLNNA 298
Query: 114 FAEIGRPAPEPKG------TIDSLALLTQRFGRRAGDMKMASLATYFGLGQ---QTHRSL 164
+ PE T+D +L QR G K + F GQ H +L
Sbjct: 299 IKDYNEKNPEKLQDKKLCLTLDPFVIL-QRIHPFLGASKKLTEQHKFLFGQGVDNAHDAL 357
Query: 165 DDVRMNLEVLKYCATVL 181
+DV+ + VLKYC L
Sbjct: 358 EDVKATVNVLKYCCHYL 374
>gi|420915940|ref|ZP_15379245.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0125-S]
gi|421033871|ref|ZP_15496893.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0930-S]
gi|392123624|gb|EIU49386.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0125-S]
gi|392230412|gb|EIV55922.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0930-S]
Length = 610
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITP 72
D+ETT + + AI E GA+ V + E L +TLV DP+ + VR GIT
Sbjct: 42 DLETTGGS--AENDAITEIGAVKV--RGGEVLGELATLV---DPQRSLPPQIVRLTGITS 94
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+V +P A + + G + HN FD ++ A + G P+P
Sbjct: 95 AMLVDAPPIAQVLPAFLEFARGAVLVAHNA-GFDIGFLKAAARQCGIDWPQPA------V 147
Query: 133 LLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T R RR A + + +LA G HR+LDD R ++VL
Sbjct: 148 LCTVRLARRVLSRDEAPRVSLGALAQLLGASTTPNHRALDDARATVDVL 196
>gi|383816237|ref|ZP_09971638.1| DNA polymerase III subunit epsilon [Serratia sp. M24T3]
gi|383294898|gb|EIC83231.1| DNA polymerase III subunit epsilon [Serratia sp. M24T3]
Length = 249
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHMYLKPDRLVDPE-----AFGI 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + + PTFA+IAD + + G HN FD + F +GR P+ +
Sbjct: 66 HGISDEFLADKPTFAEIADEFLEYIRGGELVIHNA-NFDIGFMDYEFGMLGRNIPKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSL + + F G+R
Sbjct: 125 CKITDSLFMARKLFPGKR 142
>gi|227498668|ref|ZP_03928812.1| DNA polymerase III [Acidaminococcus sp. D21]
gi|226904124|gb|EEH90042.1| DNA polymerase III [Acidaminococcus sp. D21]
Length = 225
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT R AI+E GA+ V + + T + P + +S GIT
Sbjct: 61 DIETT--GLDVARSAIIEIGAVHVRNGAVSG--RFQTFLTPEPYQSLSPFITNLTGITDS 116
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNI---LRFDCARI-REAFAEIGRPAPEPKGTID 129
+V +PTF +I + D L G GHN+ + F RI RE + P + K
Sbjct: 117 DLVGAPTFREILPRLRDFLGGYTLVGHNVNFDINFLYDRIYRETGEHLNNPYLDTKKLAK 176
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
++ + + +L +FG+ HR++DD + +VL
Sbjct: 177 TVVPGLSHY-------SLEALCKHFGIAGNHHRAVDDCELTEKVL 214
>gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
exonucleases [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 257
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
I+E GA+ V ++L + ++P P + +++ +GIT + + P FA++AD
Sbjct: 31 IIEIGAVEVINRRLTG-RTFHVYIKP--PREVDEEAIKVHGITNEFLQDKPVFAEVADEF 87
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEIGRPAP---EPKGTIDSLALLTQRF-GRRAGD 144
+ + G HN FD A + + F+ +G P P E DSLA+ + + G+R
Sbjct: 88 IEFIKGAELIIHNA-PFDVAFMDQEFSYLGNPPPKTAEMCSVTDSLAVARKMYPGKRN-- 144
Query: 145 MKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+ +L G+ + R L ++ E+L
Sbjct: 145 -NLDALCDRLGI-DNSKRVLHGALLDAEIL 172
>gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 405
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FDVET P + R + G +LVC ++ + NYSTL+ P + GI
Sbjct: 115 FDVET--PNKNNDRISYA--GILLVCNGEI--IKNYSTLINPETR--FDHFNTVLTGIDA 166
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
AV +PTF + ++ D+ + HN FD + + + G P P + +
Sbjct: 167 SAVCHAPTFKEYWPSIEDLFKKYVIIAHNA-NFDLSVLSKTLLHYGLKVP-PIKYVCTYN 224
Query: 133 LLTQRFGRRAGDMKMASLATYFGLGQQTHR 162
+F + G + S+A YF + + H
Sbjct: 225 ESRNKF-PQLGKYSLKSMAEYFDIPLENHH 253
>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 1410
Score = 48.1 bits (113), Expect = 0.009, Method: Composition-based stats.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 12/186 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT + +I+E GA+ + K + + + T V P IS+ + GIT
Sbjct: 402 FDIETTGLSSIND--SIIEIGAVKI--KDCQIVDTFETFVNPQIH--ISNFITKLTGITD 455
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V P ++ + + G HN FD I+ +G P +D+L
Sbjct: 456 DMVKRYPPIDEVLPKFLEFIKGSTLVAHNA-NFDVTFIKTKAKNLGIEVDNP--VLDTLE 512
Query: 133 LLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIF 191
L++ + K+ ++A + G+ + HR++DD R E+ L E+ + +
Sbjct: 513 -LSRHMYENLKNYKLDTVAQHLGVSLENHHRAVDDARATAEIFLKSINKL-KENGIEKVN 570
Query: 192 TVNSWV 197
+NS++
Sbjct: 571 EINSYL 576
>gi|365869921|ref|ZP_09409466.1| hypothetical protein MMAS_18680 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|421048816|ref|ZP_15511812.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|421052222|ref|ZP_15515216.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997729|gb|EHM18939.1| hypothetical protein MMAS_18680 [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392240825|gb|EIV66318.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense CCUG
48898]
gi|392242981|gb|EIV68468.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense CCUG
48898]
Length = 600
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITP 72
D+ETT + + AI E GA+ V + E L +TLV DP+ + VR GIT
Sbjct: 32 DLETTGGS--AENDAITEIGAVKV--RGGEVLGELATLV---DPQRSLPPQIVRLTGITS 84
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+V +P A + + G + HN FD ++ A + G P+P
Sbjct: 85 AMLVDAPPIAQVLPAFLEFARGAVLVAHNA-GFDIGFLKAAARQCGIDWPQPA------V 137
Query: 133 LLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T R RR A + + +LA G HR+LDD R ++VL
Sbjct: 138 LCTVRLARRVLSRDEAPRVSLGALAQLLGASTTPNHRALDDARATVDVL 186
>gi|163867311|ref|YP_001608505.1| DNA polymerase III subunit epsilon [Bartonella tribocorum CIP
105476]
gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
Length = 235
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLE--ELHNYSTLVRPADPE--LISSLSVRCN 68
FD ETT + R I+E G + + + L + H Y +PE +I V +
Sbjct: 6 FDTETTGLDKEKDR--IIEIGCVEMVDRYLTGCQFHVY------LNPEGVIIPDEVVAIH 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
G+T + + + +F+DI D + ++G HN FD I + +P I
Sbjct: 58 GLTNERLKNEKSFSDIVDEFLEFINGATMIAHN-ASFDIGFINAELKRVNKPLISVDNII 116
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ ++F G + L FG+ +HR L ++ E+L
Sbjct: 117 DTLAMARRKFP--MGPNSLDILCKRFGI-DNSHRVLHGALLDAEIL 159
>gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163]
gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae
WPP163]
gi|385870636|gb|AFI89156.1| DNA polymerase III, epsilon subunit [Pectobacterium sp. SCC3193]
Length = 245
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPDRLVDPE-----AYNI 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + + PT+ADIAD D + G HN FD + F + R P+ +
Sbjct: 66 HGISDEFLADKPTYADIADDFLDFIRGAELVIHNA-TFDIGFMDYEFRLLNRDLPKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSL + + F G+R
Sbjct: 125 CKITDSLFMARKIFPGKR 142
>gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|378443710|ref|YP_005231342.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|378448573|ref|YP_005235932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378698237|ref|YP_005180194.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378987663|ref|YP_005250827.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|418815308|ref|ZP_13370809.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418821510|ref|ZP_13376935.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|419727364|ref|ZP_14254332.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419733666|ref|ZP_14260561.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419741443|ref|ZP_14268138.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419745441|ref|ZP_14272073.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419749381|ref|ZP_14275863.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421357931|ref|ZP_15808239.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421365079|ref|ZP_15815301.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421369150|ref|ZP_15819334.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421372595|ref|ZP_15822744.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421376207|ref|ZP_15826316.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421380778|ref|ZP_15830840.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421384143|ref|ZP_15834172.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421392642|ref|ZP_15842599.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421395841|ref|ZP_15845773.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421398501|ref|ZP_15848406.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421405318|ref|ZP_15855153.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421407918|ref|ZP_15857725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421414008|ref|ZP_15863754.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421419606|ref|ZP_15869298.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421423718|ref|ZP_15873369.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421425471|ref|ZP_15875106.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421429819|ref|ZP_15879413.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421435150|ref|ZP_15884691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421440907|ref|ZP_15890382.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421445694|ref|ZP_15895115.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421451354|ref|ZP_15900720.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421572799|ref|ZP_16018445.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421577706|ref|ZP_16023294.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421582296|ref|ZP_16027837.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421584304|ref|ZP_16029812.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|422024385|ref|ZP_16370870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422029403|ref|ZP_16375667.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427545177|ref|ZP_18926175.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427560987|ref|ZP_18930940.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427598994|ref|ZP_18940160.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427602219|ref|ZP_18940541.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427626624|ref|ZP_18945449.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427649819|ref|ZP_18950204.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427659602|ref|ZP_18955157.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427664719|ref|ZP_18959904.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427693514|ref|ZP_18964798.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|436618860|ref|ZP_20514509.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436725665|ref|ZP_20519057.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436803136|ref|ZP_20525634.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436810434|ref|ZP_20529472.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436813819|ref|ZP_20532007.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436831543|ref|ZP_20536211.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436849619|ref|ZP_20540756.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436856031|ref|ZP_20545136.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436863018|ref|ZP_20549561.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436871492|ref|ZP_20554666.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436878643|ref|ZP_20559062.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436886758|ref|ZP_20563164.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436894575|ref|ZP_20568053.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436904702|ref|ZP_20574719.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436909823|ref|ZP_20576408.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436918075|ref|ZP_20581246.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436925703|ref|ZP_20586135.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436934117|ref|ZP_20590121.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436941458|ref|ZP_20595018.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436949448|ref|ZP_20599462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436959501|ref|ZP_20603698.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436975281|ref|ZP_20611557.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436987028|ref|ZP_20615672.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436999564|ref|ZP_20620137.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437009885|ref|ZP_20623865.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437018320|ref|ZP_20626812.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437035396|ref|ZP_20633322.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437046757|ref|ZP_20638573.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437049508|ref|ZP_20640128.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437056679|ref|ZP_20644047.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437065132|ref|ZP_20648817.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437079091|ref|ZP_20656585.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437082113|ref|ZP_20658188.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437090138|ref|ZP_20662710.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437115067|ref|ZP_20669289.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437122707|ref|ZP_20672549.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437132810|ref|ZP_20678260.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437137918|ref|ZP_20680713.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437149231|ref|ZP_20688104.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437151812|ref|ZP_20689483.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437160764|ref|ZP_20694837.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437169479|ref|ZP_20699799.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437176674|ref|ZP_20703478.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437181988|ref|ZP_20706747.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437259542|ref|ZP_20717062.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437272554|ref|ZP_20724304.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437276723|ref|ZP_20726537.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437288192|ref|ZP_20730526.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437309690|ref|ZP_20735618.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437328986|ref|ZP_20741076.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437338685|ref|ZP_20743890.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437381079|ref|ZP_20750323.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437413061|ref|ZP_20753483.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437456111|ref|ZP_20760230.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437470170|ref|ZP_20765185.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437485113|ref|ZP_20769225.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437499212|ref|ZP_20774021.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437513693|ref|ZP_20777671.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437531220|ref|ZP_20780700.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437554585|ref|ZP_20784357.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437571530|ref|ZP_20788639.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437586099|ref|ZP_20793186.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437602530|ref|ZP_20798537.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437625872|ref|ZP_20805725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437643076|ref|ZP_20808338.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437664550|ref|ZP_20814353.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437675750|ref|ZP_20816818.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437699331|ref|ZP_20823460.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437786548|ref|ZP_20836863.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437802331|ref|ZP_20838296.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437820257|ref|ZP_20843153.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|438064947|ref|ZP_20856857.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438090855|ref|ZP_20860684.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438105098|ref|ZP_20866164.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438114623|ref|ZP_20870239.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438121370|ref|ZP_20872158.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|440770374|ref|ZP_20949324.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440771995|ref|ZP_20950905.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445131445|ref|ZP_21381743.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445144010|ref|ZP_21386759.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445153374|ref|ZP_21391369.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445175254|ref|ZP_21397321.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445215177|ref|ZP_21401823.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445233445|ref|ZP_21406414.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445296812|ref|ZP_21411276.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445339258|ref|ZP_21416320.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445343690|ref|ZP_21417159.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445362404|ref|ZP_21424164.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|60392203|sp|P0A1G9.1|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon
gi|60392204|sp|P0A1H0.1|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon
gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|1172157|gb|AAA86422.1| dnaQ, partial [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|381291699|gb|EIC32932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381298853|gb|EIC39927.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381300946|gb|EIC42002.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381305520|gb|EIC46430.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381311455|gb|EIC52272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|392791105|gb|EJA47598.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392791760|gb|EJA48228.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|395980590|gb|EJH89813.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395983445|gb|EJH92638.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395990168|gb|EJH99300.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|396000245|gb|EJI09260.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396003434|gb|EJI12422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396003827|gb|EJI12814.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396008203|gb|EJI17138.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396010885|gb|EJI19796.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396020705|gb|EJI29546.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396024629|gb|EJI33415.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396029850|gb|EJI38586.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396030291|gb|EJI39025.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396035746|gb|EJI44418.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396035766|gb|EJI44437.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396037102|gb|EJI45753.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396056742|gb|EJI65215.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396057136|gb|EJI65608.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396058233|gb|EJI66699.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396064109|gb|EJI72497.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396064129|gb|EJI72516.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396065846|gb|EJI74214.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|402515733|gb|EJW23147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402516294|gb|EJW23707.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402516625|gb|EJW24036.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402530822|gb|EJW38035.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414023908|gb|EKT07319.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414024252|gb|EKT07644.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414025785|gb|EKT09085.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414025811|gb|EKT09110.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414037902|gb|EKT20639.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414042904|gb|EKT25428.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414052328|gb|EKT34380.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414053737|gb|EKT35715.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414058099|gb|EKT39806.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414062078|gb|EKT43434.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414067628|gb|EKT47944.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|434943276|gb|ELL49423.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434956810|gb|ELL50516.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434964926|gb|ELL57889.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434965616|gb|ELL58554.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434975327|gb|ELL67637.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434982500|gb|ELL74323.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434983683|gb|ELL75471.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434988196|gb|ELL79795.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434991464|gb|ELL82952.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434997545|gb|ELL88784.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435000707|gb|ELL91829.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435007319|gb|ELL98172.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435011290|gb|ELM02010.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435017224|gb|ELM07732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435018389|gb|ELM08864.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435028196|gb|ELM18275.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435030807|gb|ELM20796.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435040096|gb|ELM29865.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435041257|gb|ELM30999.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435045289|gb|ELM34934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435050232|gb|ELM39737.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435054146|gb|ELM43582.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435054166|gb|ELM43601.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435059609|gb|ELM48884.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435060105|gb|ELM49375.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435066785|gb|ELM55856.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435074763|gb|ELM63586.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435078227|gb|ELM66971.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435081912|gb|ELM70553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435096197|gb|ELM84469.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435097046|gb|ELM85308.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435099780|gb|ELM87971.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435101447|gb|ELM89601.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435111281|gb|ELM99186.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435115156|gb|ELN02946.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435115313|gb|ELN03084.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435122357|gb|ELN09879.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435123533|gb|ELN11026.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435131040|gb|ELN18268.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435134552|gb|ELN21680.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435143285|gb|ELN30151.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435146277|gb|ELN33070.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435148338|gb|ELN35065.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435155399|gb|ELN41943.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435164930|gb|ELN50990.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435165460|gb|ELN51500.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435167886|gb|ELN53739.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435173564|gb|ELN59061.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435183592|gb|ELN68553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435185180|gb|ELN70068.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435190517|gb|ELN75099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435196076|gb|ELN80432.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435203096|gb|ELN86882.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435203178|gb|ELN86962.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435206818|gb|ELN90310.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435215055|gb|ELN97803.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435216288|gb|ELN98763.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435224135|gb|ELO06119.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435230330|gb|ELO11664.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435243461|gb|ELO23718.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435243944|gb|ELO24198.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435247983|gb|ELO27904.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435252639|gb|ELO32167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435260218|gb|ELO39431.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435260370|gb|ELO39569.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435265678|gb|ELO44483.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435274583|gb|ELO52685.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435275111|gb|ELO53198.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435277364|gb|ELO55317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435296692|gb|ELO73054.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435303689|gb|ELO79528.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435307206|gb|ELO82390.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435312881|gb|ELO86695.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435316192|gb|ELO89383.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435321707|gb|ELO94098.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435329022|gb|ELP00480.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|436411518|gb|ELP09467.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436420223|gb|ELP18091.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|444847150|gb|ELX72300.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444850271|gb|ELX75373.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444852582|gb|ELX77659.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444858592|gb|ELX83575.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444859331|gb|ELX84281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444861308|gb|ELX86192.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444872474|gb|ELX96813.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444881494|gb|ELY05538.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444882485|gb|ELY06448.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|444884083|gb|ELY07927.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 243
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>gi|379746989|ref|YP_005337810.1| hypothetical protein OCU_22700 [Mycobacterium intracellulare ATCC
13950]
gi|378799353|gb|AFC43489.1| hypothetical protein OCU_22700 [Mycobacterium intracellulare ATCC
13950]
Length = 620
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + L ++TL+ DP+ I VR GIT V +PT +
Sbjct: 39 AITEIGAVKV--RGGVVLGEFATLI---DPQRSIPPQVVRLTGITTAMVSDAPTIDAVLP 93
Query: 87 TVFDIL---HGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR-- 141
+ G + HN FD +R A P P+ L T R RR
Sbjct: 94 MFLEFARLDQGAVLVAHNA-GFDIGFVRAAAQRCDIAWPRPQ------VLCTVRLARRVL 146
Query: 142 ----AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL---------KYCATVLFLESSL 187
A +++ASLA F + Q THR+LDD R ++VL + T L S L
Sbjct: 147 SREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRSYL 206
Query: 188 PDI 190
PD+
Sbjct: 207 PDV 209
>gi|333895631|ref|YP_004469506.1| DNA polymerase III subunit epsilon [Alteromonas sp. SN2]
gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
Length = 710
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPD 73
D+ETT R I E G + + E + Y TL+ P I + R GI+ D
Sbjct: 547 DIETTGGNNSYNR--ITEIGMVKIVAG--EVVDTYQTLINP--QRRIPATITRLTGISDD 600
Query: 74 AVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLAL 133
V +P F ++A+ + ++ HN+ FD I++ FA + P PK L
Sbjct: 601 MVADAPLFVEVAERIASFTDEAVFVAHNV-NFDYGFIKQEFARLELPFKRPK-------L 652
Query: 134 LTQRFGRRAG----DMKMASLATYFGLGQQTH 161
T R R+ +A+L +F + + H
Sbjct: 653 CTVREMRKVNPGLPSYSLANLTRHFDIKMEQH 684
>gi|433636818|ref|YP_007270445.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070017]
gi|432168411|emb|CCK65947.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070017]
Length = 329
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVA-FDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DD R+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|414582728|ref|ZP_11439868.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-1215]
gi|420877806|ref|ZP_15341174.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0304]
gi|420881708|ref|ZP_15345072.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0421]
gi|420888624|ref|ZP_15351977.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0422]
gi|420893261|ref|ZP_15356603.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0708]
gi|420898681|ref|ZP_15362017.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0817]
gi|420904140|ref|ZP_15367460.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-1212]
gi|420971066|ref|ZP_15434262.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0921]
gi|392086754|gb|EIU12578.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0304]
gi|392090763|gb|EIU16574.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0421]
gi|392092238|gb|EIU18047.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0422]
gi|392101851|gb|EIU27638.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0708]
gi|392107922|gb|EIU33704.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0817]
gi|392107964|gb|EIU33745.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-1212]
gi|392117880|gb|EIU43648.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-1215]
gi|392171473|gb|EIU97149.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
5S-0921]
Length = 600
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITP 72
D+ETT + + AI E GA+ V + E L +TLV DP+ + VR GIT
Sbjct: 32 DLETTGGS--AENDAITEIGAVKV--RGGEVLGELATLV---DPQRSLPPQIVRLTGITS 84
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+V +P A + + G + HN FD ++ A + G P+P
Sbjct: 85 AMLVDAPPIAQVLPAFLEFARGAVLVAHNA-GFDIGFLKAAARQCGIDWPQPA------V 137
Query: 133 LLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T R RR A + + +LA G HR+LDD R ++VL
Sbjct: 138 LCTVRLARRVLSRDEAPRVSLGALAQLLGASTTPNHRALDDARATVDVL 186
>gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703]
gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703]
Length = 244
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLVRP---ADPELISSLSVR 66
D ETT R G + I+E GA+ V ++L H Y ++P DPE + +
Sbjct: 11 LDTETTGMNRLGVHYEGHRIIEIGAVEVINRRLTGRH-YHVYLKPDRLVDPE-----AFQ 64
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK- 125
+GI+ + ++ P +ADI D + + G HN FD + F + R P+ +
Sbjct: 65 IHGISDEFLIDRPAYADIVDEFIEFIRGAELVIHNA-SFDIGFMDYEFRMLNRDIPKTET 123
Query: 126 --GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 124 FCKITDSLAMARRLFPGKR 142
>gi|213582095|ref|ZP_03363921.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 172
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFGV 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 248
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
I+E GA+ V ++L + ++P P + +++ +GIT + + P FA++AD
Sbjct: 22 IIEIGAVEVINRRLTG-RTFHVYIKP--PREVDEEAIKVHGITNEFLQDKPVFAEVADEF 78
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEIGRPAP---EPKGTIDSLALLTQRF-GRRAGD 144
+ + G HN FD A + + F+ +G P P E DSLA+ + + G+R
Sbjct: 79 IEFIKGAELIIHNA-PFDVAFMDQEFSYLGNPPPKTAEMCSVTDSLAVARKMYPGKRN-- 135
Query: 145 MKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
+ +L G+ + R L ++ E+L
Sbjct: 136 -NLDALCDRLGI-DNSKRVLHGALLDAEIL 163
>gi|395780493|ref|ZP_10460955.1| DNA polymerase III, epsilon subunit [Bartonella washoensis
085-0475]
gi|395418839|gb|EJF85156.1| DNA polymerase III, epsilon subunit [Bartonella washoensis
085-0475]
Length = 235
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE--LISSLSVRCN 68
FD ETT + R I+E G + + + L H Y +P+ +I V +
Sbjct: 6 FDTETTGLDKEKDR--IIEIGCVEMVNRYLTGRRFHVY------LNPQGVIIPDEVVAIH 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
G+T + + + +F+DIAD + ++G HN FD + + +P I
Sbjct: 58 GLTNERLKNEKSFSDIADAFLEFINGATMIAHN-ASFDIGFLNAELGRVNKPLISVDNII 116
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ ++F G + L FG+ +HR L ++ E+L
Sbjct: 117 DTLAMARRKF--PMGPNSLDVLCKRFGI-DNSHRVLHGALLDAEIL 159
>gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
K85]
gi|289536793|gb|EFD41371.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
K85]
Length = 329
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET + RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVET-LGFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AFDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DD R+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|257094710|ref|YP_003168351.1| Exonuclease RNase T and DNA polymerase III [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047234|gb|ACV36422.1| Exonuclease RNase T and DNA polymerase III [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 469
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP--ELISSLSV 65
+ +AF +ETT R I V + + + +STLV P P E I L
Sbjct: 4 ARLAFIGLETTGANPLRDRIT-----KIGVLEAEGDRVSTWSTLVNPQRPIPEFIQQL-- 56
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
NG V +PTFA +A + D LHGR++ H+ RF+ A ++ F +G+
Sbjct: 57 --NGSRDATVADAPTFAQVAAELADRLHGRLFIAHHA-RFNYAFVKREFQRLGK 107
>gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
Length = 244
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNPRTGDR--LIEIGCVELLNRRLTGNNLHIYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++ D + D + G HN FD + FA + P G
Sbjct: 58 GLTTEFLSDKPKFAEVVDQIRDFVKGAELIIHNA-PFDLGFLDAEFARLDLPPFTEHCGG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|349609568|ref|ZP_08888956.1| hypothetical protein HMPREF1028_00931 [Neisseria sp. GT4A_CT1]
gi|348611653|gb|EGY61294.1| hypothetical protein HMPREF1028_00931 [Neisseria sp. GT4A_CT1]
Length = 470
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 73/181 (40%), Gaps = 28/181 (15%)
Query: 47 NYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFD 106
+Y L+ P P I V+ GIT + V +P F IA + +L G + HN RFD
Sbjct: 53 HYEQLINPGKP--IPEFVVQLTGITNEMVAQAPAFDQIAPDILPLLRGSLIVAHNS-RFD 109
Query: 107 CARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRA----GDMKMASLATYFGL-GQQTH 161
+R F G P AL T + RR + S+ + G+ + H
Sbjct: 110 YTFLRHEFCRAGIDFAAP-------ALCTVQLSRRLYPQFYKHNLDSIISRMGIQTDERH 162
Query: 162 RSLDDVRMNLEVLKYCATVLFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLS 221
R+L DV A +LE SL + T+ W + R+ N K P S +L+
Sbjct: 163 RALADV---------LALADYLEHSLKEK-TLEEW---DNHCRALMNPKMLPTQLSDSLA 209
Query: 222 T 222
Sbjct: 210 A 210
>gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
NRL30031/H210]
gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
NRL30031/H210]
Length = 463
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 38/181 (20%)
Query: 47 NYSTLVRPAD--PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILR 104
+Y LV P PE ++ R GI + V ++P FADIA + +L G + HN R
Sbjct: 53 HYEQLVNPCRSIPEFVA----RLTGIHDETVKNAPVFADIAADLLPLLQGAVVVAHNS-R 107
Query: 105 FDCARIREAFAEIG---------------RPAPE-PKGTIDSLALLT--QRFGRRAGDMK 146
FD +R FA I R PE K ++DS+ T Q R
Sbjct: 108 FDYTFLRHEFARIHTDFAAPSLCTVQLSRRLYPEFYKHSLDSIIERTGIQTANRHRAMTD 167
Query: 147 MASLATY--FGLGQQTHRSLDD---VRMNLEVL-----KYCATVLFLESSLPDIFTVNSW 196
+A+L Y L ++ H+ D+ V MN ++L A L+ +LPD + V W
Sbjct: 168 VAALCDYLELSLAEKNHQQWDEHVRVLMNPKMLPTWLPDSLAQQLY---ALPDSYGVLVW 224
Query: 197 V 197
+
Sbjct: 225 L 225
>gi|417355786|ref|ZP_12131505.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353597940|gb|EHC54511.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
Length = 189
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFGV 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|387784291|ref|YP_006070374.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
[Streptococcus salivarius JIM8777]
gi|338745173|emb|CCB95539.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
[Streptococcus salivarius JIM8777]
Length = 828
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
V GIT + +P F++IA T+F+++ G I+ HN+ +FD + EA G P
Sbjct: 57 VHLTGITDQQLAQAPDFSEIARTIFELIEGCIFVAHNV-KFDANLLAEALFMEGFELRTP 115
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+ +D++ L Q F K++ L+ L Q H +++D R ++L
Sbjct: 116 R--VDTVE-LAQVFYPTFEQYKLSHLSKVLNLDLAQAHTAIEDARATGQLL 163
>gi|335996617|ref|ZP_08562534.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
ruminis SPM0211]
gi|335351687|gb|EGM53178.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
ruminis SPM0211]
Length = 968
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCN 68
A D+E T T P +++F + K+ ++ +STL+ P PE + +L+
Sbjct: 41 AVVDLEMT-GTNPNGSERLIQFSCVFTEGNKI--VNTFSTLINPLRKIPEDVQNLT---- 93
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
IT V ++PTF ++A T++ +L ++ HNI D + F IG P + +G I
Sbjct: 94 NITDKDVKNAPTFDEVAGTIYALLSDTVFVAHNI-ELDYRFLNSEFERIGFPKLDLEG-I 151
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQ 159
D++ L F A ++ LA + G +
Sbjct: 152 DTVQLAQIAFPTLAS-YRLGDLAHFLGFKHK 181
>gi|89891036|ref|ZP_01202544.1| putative DNA polymerase III, epsilon subunit [Flavobacteria
bacterium BBFL7]
gi|89516680|gb|EAS19339.1| putative DNA polymerase III, epsilon subunit [Flavobacteria
bacterium BBFL7]
Length = 255
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
R I FFD+ETT R I+E V P E+ + Y V P P I + +
Sbjct: 6 RRPICFFDLETTGVNISKDR--IVEIAIHKVLPDGTEKTYTYR--VNPTVP--IPAATTA 59
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
+GIT D V PTF ++A + +I+ AG N RFD + E G
Sbjct: 60 VHGITDDMVKDEPTFKELAHEIHNIIKDSDLAGFNSNRFDIPLLAEEMLRAG 111
>gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
Length = 406
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 108/272 (39%), Gaps = 42/272 (15%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA---DPELISSLSVRC 67
A DVETT PG I E + V P + + TLV P P+ I
Sbjct: 6 AVVDVETT-GLFPGNH-RIAEIAVVHVDPDGTVS-NRWETLVNPQRDLGPQHI------- 55
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+GI ++ +P F DIA V ++L GR+ HN+ FD R E+GR E
Sbjct: 56 HGIRAADILHAPVFGDIAHDVMELLAGRVLVAHNV-HFD---YRFVSHELGRAGLELPFE 111
Query: 128 IDSLALLTQRFGRR---AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFL 183
+ L T + RR + FGL H + DD VL + L +
Sbjct: 112 VHD-CLCTMKLARRYLPGAGRSLKDCCDSFGLNLANAHSAGDDAEAAAHVL---SNYLRM 167
Query: 184 ESSLPDIFTV------NSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASP 237
+S P+ F+ +SW P + R A P G P + F E N P
Sbjct: 168 DSGNPEWFSALDRAYFSSW--PAVEPKRRQPALRRPAG------EPQTHF-LERLVNRLP 218
Query: 238 PDQGKEEIHPIFSLVTQGTAEVDSVLAVTTAD 269
G +E + +++ + A +D ++V+ AD
Sbjct: 219 EVAGPDEHNAYLAMLDR--ALMDRQISVSEAD 248
>gi|420237953|ref|ZP_14742396.1| DNA polymerase III, epsilon subunit [Rhizobium sp. CF080]
gi|398089335|gb|EJL79856.1| DNA polymerase III, epsilon subunit [Rhizobium sp. CF080]
Length = 234
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYST------LVRPADPELISSLSV 65
FD ETT R ++E G I E ++N+ T + P D + + ++
Sbjct: 5 IFDTETTGLESKVDR--VIEIGGI-------ELINNFPTGRTLHLYINPGDRK-VHPDAL 54
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+GIT + + P+F D+ + D G W HN FD I FA +G P
Sbjct: 55 AVHGITDEFLKDKPSFGDVVQQIIDFFDGAKWIAHNAT-FDMGFINAEFARLGLPPVMSD 113
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+LA+ ++ G + +L +G+ HR+ ++ E+L
Sbjct: 114 QVIDTLAMARRK--HPMGPNSLDALCRRYGI-DNAHRTKHGALLDSELL 159
>gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977]
gi|420909554|ref|ZP_15372867.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0125-R]
gi|420920323|ref|ZP_15383621.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0728-S]
gi|420926828|ref|ZP_15390112.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-1108]
gi|420931021|ref|ZP_15394297.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-151-0930]
gi|420938071|ref|ZP_15401340.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-152-0914]
gi|420941281|ref|ZP_15404540.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-153-0915]
gi|420946104|ref|ZP_15409357.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-154-0310]
gi|420966337|ref|ZP_15429544.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0810-R]
gi|420977172|ref|ZP_15440353.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0212]
gi|420982548|ref|ZP_15445718.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0728-R]
gi|421006998|ref|ZP_15470111.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0119-R]
gi|421012476|ref|ZP_15475564.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0122-R]
gi|421017385|ref|ZP_15480447.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0122-S]
gi|421022889|ref|ZP_15485937.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0731]
gi|421028529|ref|ZP_15491564.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0930-R]
gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium
abscessus]
gi|392121928|gb|EIU47693.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0125-R]
gi|392134328|gb|EIU60070.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0728-S]
gi|392138635|gb|EIU64370.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-1108]
gi|392140039|gb|EIU65771.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-151-0930]
gi|392143586|gb|EIU69311.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-152-0914]
gi|392151249|gb|EIU76960.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-153-0915]
gi|392159312|gb|EIU85008.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
1S-154-0310]
gi|392168050|gb|EIU93730.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0212]
gi|392174566|gb|EIV00233.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
6G-0728-R]
gi|392200943|gb|EIV26547.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0119-R]
gi|392206847|gb|EIV32429.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0122-R]
gi|392212609|gb|EIV38170.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0122-S]
gi|392215586|gb|EIV41134.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0731]
gi|392231094|gb|EIV56603.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0930-R]
gi|392254705|gb|EIV80169.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
3A-0810-R]
Length = 600
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITP 72
D+ETT + + AI E GA+ V + E L +TLV DP+ + VR GIT
Sbjct: 32 DLETTGGS--AENDAITEIGAVKV--RGGEVLGELATLV---DPQRSLPPQIVRLTGITS 84
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+V +P A + + G + HN FD ++ A + G P+P
Sbjct: 85 AMLVDAPPIAQVLPAFLEFARGAVLVAHNA-GFDIGFLKAAARQCGIDWPQPA------V 137
Query: 133 LLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T R RR A + + +LA G HR+LDD R ++VL
Sbjct: 138 LCTVRLARRVLSRDEAPRVSLGALAQLLGASTTPNHRALDDARATVDVL 186
>gi|213021700|ref|ZP_03336147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213612768|ref|ZP_03370594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 164
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFGV 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|437203115|ref|ZP_20712059.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435212106|gb|ELN95140.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
Length = 253
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|423511605|ref|ZP_17488136.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-1]
gi|402451219|gb|EJV83044.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-1]
Length = 315
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT A++ L I HN FD ++
Sbjct: 52 RPI-PSRITSLT----GITNYRVSDAPTIAEVLPLFLAFLDTNIIVAHN-ASFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--LPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA V
Sbjct: 164 VYQNCAAV 171
>gi|344998861|ref|YP_004801715.1| DNA polymerase III subunit epsilon [Streptomyces sp. SirexAA-E]
gi|344314487|gb|AEN09175.1| DNA polymerase III, epsilon subunit [Streptomyces sp. SirexAA-E]
Length = 333
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 47 NYSTLVRPA-DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRF 105
++ TLV P DP V +G+T +A+ +P F ++A + + L GR+ HN F
Sbjct: 52 HWYTLVNPERDPG-----PVWIHGLTSEALEGAPLFPEVAAQLSERLDGRVLVAHNAA-F 105
Query: 106 DCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQ-THRSL 164
D + + +A AP + + ++A L++ + K+ SLA +FG+ QQ H +L
Sbjct: 106 DWSMLAREYARAAITAPV-RQRLCTIA-LSKELRLPLPNHKLESLAAHFGVVQQRAHHAL 163
Query: 165 DDVRMNLEVLK 175
DD R+ E +
Sbjct: 164 DDARVLAEAFR 174
>gi|407985473|ref|ZP_11166069.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Mycobacterium hassiacum DSM 44199]
gi|407372970|gb|EKF21990.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Mycobacterium hassiacum DSM 44199]
Length = 338
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+G+T + + P FADI + ++L GR HN+ FD + + IG P
Sbjct: 75 HVHGLTAEMLAGQPRFADIVAPLIELLRGRTLVAHNV-AFDYSFLVAEAEMIGAELP--- 130
Query: 126 GTIDSLALLTQRFGRRAG----DMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
IDS A+ T RR ++++ +LA ++G+ Q + H +LDD + ++LK
Sbjct: 131 --IDS-AMCTVELARRLALGTENLRLETLAAHWGITQLKPHDALDDALVLAQILK 182
>gi|338706598|ref|YP_004673366.1| DNA-directed DNA polymerase III subunit epsilon [Treponema
paraluiscuniculi Cuniculi A]
gi|335344659|gb|AEH40575.1| DNA-directed DNA polymerase III epsilon subunit [Treponema
paraluiscuniculi Cuniculi A]
Length = 215
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 16/174 (9%)
Query: 7 RSEIAF--FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISS 62
+AF FD ETT R I+E GA+ K + + +STL+ P A P +S
Sbjct: 10 HEHVAFTAFDTETTGLKAEEDR--IIEIGAVKFDQKGI--IARFSTLIFPDRAIPPDVSK 65
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
+ N IT D +V+ P F +I + G + HN FD + + + + P
Sbjct: 66 I----NHITDDMLVNKPRFCEIVLDFSRFIKGTVLVAHN-ANFDVEFLNAELS-LCKKQP 119
Query: 123 EPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+D+ A+ F G ++ +LA FGL HR+ DD R+ +E+
Sbjct: 120 LSHKVVDTYAMAQAVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELF 173
>gi|311280820|ref|YP_003943051.1| DNA polymerase III subunit epsilon [Enterobacter cloacae SCF1]
gi|308750015|gb|ADO49767.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1]
Length = 246
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFNV 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFAD+ D + + G HN FD + F+++ R +
Sbjct: 69 HGIADEFLLDKPTFADVCDEFLEYIRGAELVIHNA-SFDIGFMDYEFSKLNRGIAKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
ATCC 35185]
gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
ATCC 35185]
Length = 186
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 24/151 (15%)
Query: 48 YSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFD 106
++TL++P P L S ++ +GI+P V +PTFA++ + + + L G+I HN FD
Sbjct: 36 WTTLIQP--PGLRFDSFNIGIHGISPKDVTDAPTFAEVWEELKERLAGKIVVAHNA-SFD 92
Query: 107 CARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAG----DMKMASLATYFGLGQQTHR 162
++ + AP + T R R+ D K+ ++ + + + HR
Sbjct: 93 MGVLKASLLANRLQAPYFR------TCCTVRIARKVWPALDDHKLNTVGAHLNINFRHHR 146
Query: 163 SLDDVRMNLEVLKYCATVLF---LESSLPDI 190
+LDD R CA +L +E+ DI
Sbjct: 147 ALDDART-------CAAILLFAGMETGTDDI 170
>gi|377558773|ref|ZP_09788355.1| DNA polymerase III epsilon subunit [Gordonia otitidis NBRC 100426]
gi|377524166|dbj|GAB33520.1| DNA polymerase III epsilon subunit [Gordonia otitidis NBRC 100426]
Length = 590
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 10/171 (5%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+ + D+ETT + R I E GA+ + + + L ++TLV P P I V
Sbjct: 22 TTLVVVDLETTGGSATDDR--ITEIGAVKI--RGGQVLGEFATLVDPGAP--IPPQIVAL 75
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT V +P ++ + + G I HN RFD + +R+ + P T
Sbjct: 76 TGITEAMVYDAPRIDEVLPSFIEFARGSILVAHNA-RFDMSFLRQNALRLHLQWPF-TAT 133
Query: 128 IDSLALLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKY 176
+ ++ + + GR A +++++LA F + + THR+LDD R +EV +
Sbjct: 134 LCTVTMARRILGRDEAPTVRLSALADLFDVTVRPTHRALDDARATVEVFHH 184
>gi|419708668|ref|ZP_14236137.1| hypothetical protein OUW_04006 [Mycobacterium abscessus M93]
gi|382943943|gb|EIC68254.1| hypothetical protein OUW_04006 [Mycobacterium abscessus M93]
Length = 600
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITP 72
D+ETT + + AI E GA+ V + E L +TLV DP+ + VR GIT
Sbjct: 32 DLETTGGS--AENDAITEIGAVKV--RGGEVLGELATLV---DPQRSLPPQIVRLTGITS 84
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+V +P A + + G + HN FD ++ A + G P+P
Sbjct: 85 AMLVDAPPIAQVLPAFLEFARGAVLVAHNA-GFDIGFLKAAARQCGIDWPQPA------V 137
Query: 133 LLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T R RR A + + +LA G HR+LDD R ++VL
Sbjct: 138 LCTVRLARRVLSRDEAPRVSLGALAQLLGASTTPNHRALDDARATVDVL 186
>gi|433632806|ref|YP_007266434.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070010]
gi|432164399|emb|CCK61855.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070010]
Length = 329
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVVDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPGVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-GFDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DD R+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|415885283|ref|ZP_11547211.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus methanolicus MGA3]
gi|387590952|gb|EIJ83271.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus methanolicus MGA3]
Length = 936
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 6 DRSEIAFFDVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSL 63
++ + D+ETT P R G R I++F A+++ K+ E YS+ V P IS
Sbjct: 2 NQHKFTVIDLETTGNAPKR-GDR--IIQFAAVVIENGKIIE--QYSSFVNPEQE--ISPF 54
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GI + V ++P F++IA + +L G + HN+L FD + ++E G
Sbjct: 55 IEELTGINDEMVKNAPFFSEIAPKILSLLDGAYFVAHNVL-FDLSFLQEELIHAG 108
>gi|419713417|ref|ZP_14240844.1| hypothetical protein S7W_03065 [Mycobacterium abscessus M94]
gi|420863867|ref|ZP_15327258.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0303]
gi|420868235|ref|ZP_15331618.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0726-RA]
gi|420872667|ref|ZP_15336046.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0726-RB]
gi|420986860|ref|ZP_15450019.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0206]
gi|421039390|ref|ZP_15502400.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0116-R]
gi|421043025|ref|ZP_15506027.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0116-S]
gi|382946827|gb|EIC71110.1| hypothetical protein S7W_03065 [Mycobacterium abscessus M94]
gi|392071534|gb|EIT97379.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0726-RA]
gi|392071544|gb|EIT97388.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0303]
gi|392074355|gb|EIU00193.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0726-RB]
gi|392186967|gb|EIV12611.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0206]
gi|392225499|gb|EIV51016.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0116-R]
gi|392240858|gb|EIV66350.1| DNA polymerase III epsilon subunit [Mycobacterium abscessus
4S-0116-S]
Length = 600
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITP 72
D+ETT + + AI E GA+ V + E L +TLV DP+ + VR GIT
Sbjct: 32 DLETTGGS--AENDAITEIGAVKV--RGGEVLGELATLV---DPQRSLPPQIVRLTGITS 84
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+V +P A + + G + HN FD ++ A + G P+P
Sbjct: 85 AMLVDAPPIAQVLPAFLEFARGAVLVAHNA-GFDIGFLKAAARQCGIDWPQPA------V 137
Query: 133 LLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T R RR A + + +LA G HR+LDD R ++VL
Sbjct: 138 LCTVRLARRVLSRDEAPRVSLGALAQLLGASTTPNHRALDDARATVDVL 186
>gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 246
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVIDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
PsJN]
Length = 383
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT + R I E G + + P + +S+LV P P I S + G
Sbjct: 15 IVFVDLETTGGSTAEHR--ITEVGVVEIGPAGVS---RWSSLVDPQQP--IPSFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTF IA +F L+G+++ HN FD +R F +G
Sbjct: 68 ITNAMVRGAPTFDVIAPELFKRLNGKLFVAHNA-SFDRGFLRGEFRRVG 115
>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
B-59395]
Length = 623
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 24/170 (14%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCNGIT 71
D+ETT + R I E GA+ + + E L ++TLV P A P I +L+ GIT
Sbjct: 63 DLETTGGSADDDR--ITEIGAVKI--RGGEVLGEFATLVDPGRAIPPQIVALT----GIT 114
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
+ +P ++ + G + HN RFD +R++ A + P P S
Sbjct: 115 TAMLYDAPRIEEVLPAFAEFARGTVLVAHNA-RFDMGFLRKSAARMRLPWPF------ST 167
Query: 132 ALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+L T RR A +K+++LA F + + THR+LDD R +EV
Sbjct: 168 SLCTVVMARRILSRQEAPTVKLSALAELFQVSVRPTHRALDDARATVEVF 217
>gi|421470763|ref|ZP_15919119.1| exonuclease [Burkholderia multivorans ATCC BAA-247]
gi|400227002|gb|EJO57027.1| exonuclease [Burkholderia multivorans ATCC BAA-247]
Length = 375
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 12/176 (6%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+ F D+ETT T R I E G + + P + ++TLV P P I + G
Sbjct: 15 LVFVDLETTGGTPAEHR--ITEIGVVEIGPLGVS---TWTTLVNPGQP--IPPFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP-APEPKGTI 128
I+ V +P+FA++A +F+ L G+++ HN FD +R F G P+ T+
Sbjct: 68 ISDAMVRDAPSFAELAPALFERLDGKLFVAHNA-SFDRGFLRAEFERAGFAFNPDVLCTV 126
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 184
L R R D A +A + + HR+L D + + ++ V+ LE
Sbjct: 127 RLSRALFPRESRHGLD---ALIARHGLVPAARHRALADADLLWQFWRHLHDVVPLE 179
>gi|418420113|ref|ZP_12993294.1| hypothetical protein MBOL_18400 [Mycobacterium abscessus subsp.
bolletii BD]
gi|363999950|gb|EHM21151.1| hypothetical protein MBOL_18400 [Mycobacterium abscessus subsp.
bolletii BD]
Length = 600
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITP 72
D+ETT + + AI E GA+ V + E L +TLV DP+ + VR GIT
Sbjct: 32 DLETTGGS--AENDAITEIGAVKV--RGGEVLGELATLV---DPQRSLPPQIVRLTGITS 84
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+V +P A + + G + HN FD ++ A + G P+P
Sbjct: 85 AMLVDAPPIAQVLPAFLEFARGAVLVAHNA-GFDIGFLKAAARQCGIDWPQPA------V 137
Query: 133 LLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
L T R RR A + + +LA G HR+LDD R ++VL
Sbjct: 138 LCTVRLARRVLSRDEAPRVSLGALAQLLGASTTPNHRALDDARATVDVL 186
>gi|417449875|ref|ZP_12162821.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|353637245|gb|EHC83110.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
Length = 191
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 14 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFGV 68
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 69 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 127
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 128 CKVTDSLALARKMFPGKR 145
>gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
gi|423378632|ref|ZP_17355916.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1O-2]
gi|423441686|ref|ZP_17418592.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X2-1]
gi|423448089|ref|ZP_17424968.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5O-1]
gi|423464759|ref|ZP_17441527.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-1]
gi|423534101|ref|ZP_17510519.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB2-9]
gi|423540632|ref|ZP_17517023.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB4-10]
gi|423546865|ref|ZP_17523223.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB5-5]
gi|423623345|ref|ZP_17599123.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD148]
gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
gi|401130500|gb|EJQ38169.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5O-1]
gi|401174167|gb|EJQ81379.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB4-10]
gi|401180369|gb|EJQ87531.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB5-5]
gi|401258514|gb|EJR64699.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD148]
gi|401634279|gb|EJS52046.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1O-2]
gi|402416518|gb|EJV48834.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X2-1]
gi|402419196|gb|EJV51476.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-1]
gi|402463071|gb|EJV94773.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB2-9]
Length = 315
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PSRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--FPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + C ++
Sbjct: 164 VYQKCTSI 171
>gi|359782741|ref|ZP_09285960.1| DNA polymerase III subunit epsilon [Pseudomonas psychrotolerans
L19]
gi|359369193|gb|EHK69765.1| DNA polymerase III subunit epsilon [Pseudomonas psychrotolerans
L19]
Length = 244
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGI 70
D ETT +P G R I+E G + V ++L H + L +P+ I ++ +GI
Sbjct: 6 LDTETTGMPVTDGHR--IIEIGGVEVIGRRLTGRHFHVYL----NPDRQIDEGAIAVHGI 59
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T + V P FA+IAD+ F+ + G HN FD I FA +G PE
Sbjct: 60 TDEYVADKPRFAEIADSFFEFIEGAELVIHNA-PFDVGFINMEFARLG-AHPERADITQH 117
Query: 131 ---LALLTQRFGRRAGDMK-MASLATYFGLGQQTHRSLDDVRMNLEVL 174
L L GR G + +L +G+ ++R L ++ E+L
Sbjct: 118 CSVLDTLVMARGRHPGQRNSLDALCKRYGV-DNSNRELHGALLDAEIL 164
>gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185]
gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185]
Length = 202
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 24/151 (15%)
Query: 48 YSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFD 106
++TL++P P L S ++ +GI+P V +PTFA++ + + + L G+I HN FD
Sbjct: 52 WTTLIQP--PGLRFDSFNIGIHGISPKDVTDAPTFAEVWEELKERLAGKIVVAHN-ASFD 108
Query: 107 CARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAG----DMKMASLATYFGLGQQTHR 162
++ + AP + T R R+ D K+ ++ + + + HR
Sbjct: 109 MGVLKASLLANRLQAPYFR------TCCTVRIARKVWPALDDHKLNTVGAHLNINFRHHR 162
Query: 163 SLDDVRMNLEVLKYCATVLF---LESSLPDI 190
+LDD R CA +L +E+ DI
Sbjct: 163 ALDDART-------CAAILLFAGMETGTDDI 186
>gi|441500292|ref|ZP_20982459.1| DNA Pol III Epsilon Chain [Fulvivirga imtechensis AK7]
gi|441435985|gb|ELR69362.1| DNA Pol III Epsilon Chain [Fulvivirga imtechensis AK7]
Length = 270
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
++ + FFD+ETT R I+E + V P E +T + P P I + +
Sbjct: 6 KNPLTFFDLETTGTNIVKDR--IVELSVVKVMPNG--ENITKTTKINPTIP--IPAETSV 59
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
+GI + + +PTF +IA ++ L G AG NIL+FD + E F G
Sbjct: 60 IHGIYDEDIKEAPTFKNIAKSLAKFLEGSDLAGFNILKFDVPMLVEEFLRAG 111
>gi|332532199|ref|ZP_08408080.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038297|gb|EGI74742.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
ANT/505]
Length = 671
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT + G R I E G + V K+ + +++LV P P I+SL+ GI+
Sbjct: 571 DIETTGGLKGGNR--ITEIGIVKVRHGKV--IDTWTSLVNPERHIPGFITSLT----GIS 622
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
V ++P FADI + D L G I+ HN+ FD I++
Sbjct: 623 DSMVYNAPVFADIVKPLLDKLAGSIFVAHNV-NFDYGFIKK 662
>gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
IOP40-10]
gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
IOP40-10]
Length = 244
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNPRTGDR--LIEIGCVELLNRRLTGNNLHIYVNPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA++ D + D + G HN FD + FA + P G
Sbjct: 58 GLTTEFLRDKPKFAEVVDQIRDFVKGAELIIHNA-PFDLGFLDAEFARLDLPPFTEHCGG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+L Q F G+R + +L FG+ HR+L ++ E+L
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELL 161
>gi|417791676|ref|ZP_12439110.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii E899]
gi|449309401|ref|YP_007441757.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii SP291]
gi|333954229|gb|EGL72097.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii E899]
gi|449099434|gb|AGE87468.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii SP291]
Length = 243
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFMV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + +++ P F D+ D D + G HN FD + F + R P+
Sbjct: 66 HGISDEFLMNKPVFGDVVDDFLDYIRGAELVIHNA-SFDIGFMDYEFGMLNRGIPKTDTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
Length = 383
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT + R I E G + V P + +S+LV P P I S + G
Sbjct: 15 IVFVDLETTGGSTNEHR--ITEVGVVEVGPTGVT---RWSSLVDPQQP--IPSFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTF IA +F L+G+++ HN FD +R F +G
Sbjct: 68 ITNAMVRGAPTFDAIAPELFARLNGKLFVAHNA-SFDRGFLRGEFRRVG 115
>gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
KC583]
gi|421760162|ref|ZP_16196983.1| DNA polymerase III subunit epsilon [Bartonella bacilliformis INS]
gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
KC583]
gi|411176634|gb|EKS46651.1| DNA polymerase III subunit epsilon [Bartonella bacilliformis INS]
Length = 234
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 16/167 (9%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE--LISSLSVRC 67
FD ETT + R I+E G + + + L + H Y +P+ +I V
Sbjct: 5 IFDTETTGLDKDNDR--IIEIGCVEMVDRYLTGRQFHVY------LNPQGVIIPDEVVAI 56
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+G+T + + F DIAD + + + G + HN FD + + + +P
Sbjct: 57 HGLTNERLKGEKKFDDIADELLEFIDGAMMIAHNA-NFDISFLNAELKRVNKPLISIDNV 115
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+LA+ ++F G + L FG+ +HR L ++ E+L
Sbjct: 116 IDTLAMARRKF--PMGPNSLDVLCKRFGI-DNSHRILHGALLDAEIL 159
>gi|444432647|ref|ZP_21227799.1| DNA polymerase III subunit epsilon [Gordonia soli NBRC 108243]
gi|443886568|dbj|GAC69520.1| DNA polymerase III subunit epsilon [Gordonia soli NBRC 108243]
Length = 576
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA---DPELISSLS 64
+ + D+ETT + + I E GA+ + + E + ++TLV P P++++
Sbjct: 23 TTLVVVDLETTGGSAKADQ--ITEIGAVKI--RGGEVIGEFATLVDPGCRIPPQIVT--- 75
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
GIT V +P A++ + + G I HN RFD +R+ A +G P
Sbjct: 76 --LTGITQAMVTDAPRIAEVLPSFVEFARGAILVAHNA-RFDMGFLRQNAARLGIDWPF- 131
Query: 125 KGTIDSLALLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
++ ++A+ + R A +++++LA F + + THR+LDD R +EV
Sbjct: 132 TASLCTVAMARRILDRDEAPSVRLSALADLFDVSVRPTHRALDDARATVEVF 183
>gi|407714465|ref|YP_006835030.1| DNA polymerase III subunit epsilon [Burkholderia phenoliruptrix
BR3459a]
gi|407236649|gb|AFT86848.1| DNA polymerase III subunit epsilon [Burkholderia phenoliruptrix
BR3459a]
Length = 381
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT + R I E G + V P + +S+LV P P I S + G
Sbjct: 10 IVFVDLETTGGSTSEHR--ITEVGVVEVGPTGVT---RWSSLVDPQQP--IPSFIQQLTG 62
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTF IA +F L G+++ HN FD +R F +G
Sbjct: 63 ITNAMVRGAPTFEAIAPDLFARLDGKLFVAHNA-SFDRGFLRGEFRRVG 110
>gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae]
Length = 249
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 56 DPE-LISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAF 114
+PE LI + R + IT + V SP ++ + D + I GH I FD A +
Sbjct: 48 NPETLIPQETTRIHHITDEMVQKSPKINEVIQSYLDFIGESIVVGHGI-PFDLALLE--- 103
Query: 115 AEIGRPAPEPKGTIDSLALLTQRFGRRAGDM---KMASLATYFGL-GQQTHRSLDDVRMN 170
AE R A P ++ L T R R G+ + SL +F + G HR++ DV +N
Sbjct: 104 AEAKR-AGVPSRLLNQRYLDTLRLARLYGESPTNSLESLRKHFNIQGINAHRAMSDVLVN 162
Query: 171 LEVLKYCA 178
++V KY +
Sbjct: 163 IDVFKYLS 170
>gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
Length = 318
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PSRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--FPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + C ++
Sbjct: 167 VYQKCTSI 174
>gi|423611819|ref|ZP_17587680.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD107]
gi|401246826|gb|EJR53170.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD107]
Length = 315
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ L I HN FD ++
Sbjct: 52 RPI-PSRITSLT----GITNYRVSDAPTIEEVLPLFLAFLDTNIIVAHN-ASFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H +LDD
Sbjct: 106 NVNMLG--LPEPKNNVIDTVFLAKKYMKYAPNHKLETLKRMLGIRLSSHNALDDCITCAA 163
Query: 173 VLKYCATV 180
V + CA+V
Sbjct: 164 VYQRCASV 171
>gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T17]
gi|289545709|gb|EFD49357.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T17]
Length = 284
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-ADPELISSL 63
QDR A DVET+ RPGQ I L +LE+ + +L+ P DP
Sbjct: 12 QDRG-WAVIDVETS-GFRPGQARIISLAVLGLDAAGRLEQ--SVVSLLNPKVDPG----- 62
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+G+T + P FADIA V D+L GR HN+ FD A + P
Sbjct: 63 PTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVA-FDYAFLAAEAEIAEAELP- 120
Query: 124 PKGTIDSLALLTQRFGRR----AGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCA 178
+D + T RR ++++ +LA ++G+ QQ H + DD R+ +L
Sbjct: 121 ----VD-FVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILA--- 172
Query: 179 TVLFLESSLPDIFTVNSWVSPNATTRSR 206
++L ++ W+ + TR R
Sbjct: 173 ------AALESARELDVWLPVHPVTRRR 194
>gi|445431482|ref|ZP_21438836.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC021]
gi|444759585|gb|ELW84051.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC021]
Length = 459
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE S +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGESENIH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GI+ D + P +ADIADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GISDDFLKDKPVYADIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFRRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|403724569|ref|ZP_10946100.1| DNA polymerase III epsilon subunit [Gordonia rhizosphera NBRC
16068]
gi|403205568|dbj|GAB90431.1| DNA polymerase III epsilon subunit [Gordonia rhizosphera NBRC
16068]
Length = 573
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
+ + D+ETT + R I E GA+ + + E + ++TLV P P I V
Sbjct: 21 TTLVVVDLETTGGSPTDDR--ITEIGAVKI--RGGEVIGEFATLVDPGQP--IPPQIVTL 74
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT V +P A + + + G I HN RFD +R+ + P
Sbjct: 75 TGITEAMVTDAPAIAQVLPSFVEFARGAILVAHNA-RFDMGFLRQNAVRLDIDWPF---- 129
Query: 128 IDSLALLTQRFGRR------AGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+ +L T RR A +++++LA F + + THR+LDD R +EV
Sbjct: 130 --TASLCTVTMARRILTRDEAPSVRLSALADLFAVSVRPTHRALDDARATVEVF 181
>gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
Length = 318
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PSRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--FPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + C ++
Sbjct: 167 VYQKCTSI 174
>gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
Length = 315
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 52 RPI-PSRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 105
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 106 NVNMLG--FPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 163
Query: 173 VLKYCATV 180
V + C ++
Sbjct: 164 VYQKCTSI 171
>gi|407705995|ref|YP_006829580.1| glycosyl transferase group 1 [Bacillus thuringiensis MC28]
gi|407383680|gb|AFU14181.1| DNA polymerase III alpha subunit [Bacillus thuringiensis MC28]
Length = 318
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 53 RPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
RP P I+SL+ GIT V +PT ++ LH + HN FD ++
Sbjct: 55 RPI-PSRITSLT----GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNA-SFDMRFLKS 108
Query: 113 AFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLE 172
+G PEPK + L +++ + A + K+ +L G+ +H + DD
Sbjct: 109 NVNMLG--FPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAA 166
Query: 173 VLKYCATV 180
V + C ++
Sbjct: 167 VYQKCTSI 174
>gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C]
Length = 235
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE--LISSLSVRCN 68
FD ETT + R I+E G I + + L H Y +P+ +I V +
Sbjct: 6 FDTETTGLNKESDR--IIEIGCIEMVNRYLTGRRFHVY------LNPQGVVIPDEVVAIH 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
G+T + + F DI D + D + G HN FD + + +P I
Sbjct: 58 GLTNERLKDEKKFDDIVDALLDFIDGATIVAHN-ANFDIGFLNAELERVNKPLINSDNVI 116
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+L++ +RF G + L FG+ +HR L ++ E+L
Sbjct: 117 DTLSIARRRFP--MGPNSLDVLCKRFGI-DNSHRVLHGALLDAEIL 159
>gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
Length = 934
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 11 AFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
A D+ETT + G R I++ G V K+ ++ ++T V P P +I +L+
Sbjct: 8 AVVDIETTGTSVKDGDR--IIQIGCAFVKNNKI--INTFATDVNPLTTVPAVIENLT--- 60
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GI+ V +P F D+A TV+ +L G ++ HN+ FD I +G P P
Sbjct: 61 -GISNARVRKAPPFDDLAGTVYSLLQGTVFVAHNV-NFDLPFINSELQRVGYPE-LPIQA 117
Query: 128 IDSLAL 133
+D+++L
Sbjct: 118 VDTVSL 123
>gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus glucosetrophus
SIP3-4]
gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus glucosetrophus
SIP3-4]
Length = 234
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 14/185 (7%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGIT 71
F D ETT P Q I+E A+ V +++ H Y + P D E I + + +GIT
Sbjct: 5 FLDTETT-GLYPAQGHRIIEIAAVEVINRRITSQH-YHVYLNP-DRE-IDAGAQEVHGIT 60
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE--PKGTID 129
+ + P FAD+ D + HN FD + I +P E G ID
Sbjct: 61 LEFLQDKPRFADVVGEFLDFVQDSELIIHNA-PFDVGFLNAELGRIEKPGIESVASGIID 119
Query: 130 SLALLTQ-RFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFLESS 186
+L + + R G+R + +L +FG+ + R+L ++ E+L Y A ES
Sbjct: 120 TLKMAKEMRPGQRN---NLDALCRHFGI-DNSKRTLHGALLDAELLADVYLAMTRGQESL 175
Query: 187 LPDIF 191
+ D+
Sbjct: 176 IIDML 180
>gi|383776599|ref|YP_005461165.1| putative DNA polymerase III subunit epsilon [Actinoplanes
missouriensis 431]
gi|381369831|dbj|BAL86649.1| putative DNA polymerase III epsilon subunit [Actinoplanes
missouriensis 431]
Length = 578
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 10/164 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D+ETT G I E GA+ V + +L ++TLV P P + GIT
Sbjct: 36 LDLETTGGAADGA--GITEIGAVKV--RAGVQLGEFATLVNPGVP--LPPFITVLTGITE 89
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+ +P + + + L G + HN +D ++ A A G P P+ + +D+ A
Sbjct: 90 AMLRPAPPIETVLPALLEFLRGAVLVAHNA-PYDVGFLKAACARHGYPWPQMR-VLDTAA 147
Query: 133 LLTQRFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
L + + + K+ +LA +F + HR+LDD + ++VL
Sbjct: 148 LARRALTKDEVPNRKLGTLARFFRSAVEPNHRALDDAKATVDVL 191
>gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 934
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 11 AFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
A D+ETT + G R I++ G V K+ ++ ++T V P P +I +L+
Sbjct: 8 AVVDIETTGTSVKDGDR--IIQIGCAFVKNNKI--INTFATDVNPLTTVPAVIENLT--- 60
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GI+ V +P F D+A TV+ +L G ++ HN+ FD I +G P P
Sbjct: 61 -GISNARVRKAPPFDDLAGTVYSLLQGTVFVAHNV-NFDLPFINSELQRVGYPE-LPIQA 117
Query: 128 IDSLAL 133
+D+++L
Sbjct: 118 VDTVSL 123
>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
11379]
gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
15998]
gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
15998]
Length = 343
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHN----YSTLVRPA-DP 57
PT A DVETT R + + + +L+ L N + TLV P DP
Sbjct: 14 PTAYPQGYAVVDVETTGLARDDRIISAAVY--------RLDALGNVEDHWYTLVNPERDP 65
Query: 58 ELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI 117
V +G+T D + +P F ++A+ + L R+ HN FD + I +A
Sbjct: 66 G-----PVWIHGLTSDVLEGAPLFPEVAEELSARLADRVLVAHNAA-FDWSMIAREYARA 119
Query: 118 GRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFG-LGQQTHRSLDDVRMNLEVLK 175
AP + + ++A L + + K+ASLA +FG + QQ H +LDD R+ E +
Sbjct: 120 SVVAPV-EQRLCTIA-LAKELRLPLPNHKLASLAAHFGVVQQQAHHALDDARVLAEAFR 176
>gi|429114122|ref|ZP_19175040.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 701]
gi|426317251|emb|CCK01153.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 701]
Length = 276
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFMV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + +++ P F D+ D D + G HN FD + F + R P+
Sbjct: 66 HGISDEFLMNKPVFGDVVDDFLDYIRGAELVIHNA-SFDIGFMDYEFGMLNRGIPKTDTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKITDSLALARKMFPGKR 142
>gi|429092428|ref|ZP_19155059.1| DNA polymerase III epsilon subunit [Cronobacter dublinensis 1210]
gi|429097241|ref|ZP_19159347.1| DNA polymerase III epsilon subunit [Cronobacter dublinensis 582]
gi|426283581|emb|CCJ85460.1| DNA polymerase III epsilon subunit [Cronobacter dublinensis 582]
gi|426742823|emb|CCJ81172.1| DNA polymerase III epsilon subunit [Cronobacter dublinensis 1210]
Length = 243
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE +
Sbjct: 11 LDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPE-----AFMV 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI+ + +++ P F D+ D D + G HN FD + F + R P+ +
Sbjct: 66 HGISDEFLLNKPVFGDVVDDFLDYIRGAELVIHNA-SFDIGFMDYEFGMLNRGIPKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKITDSLAMARKMFPGKR 142
>gi|418275317|ref|ZP_12890640.1| ATP-dependent helicase DinG [Lactobacillus plantarum subsp.
plantarum NC8]
gi|376008868|gb|EHS82197.1| ATP-dependent helicase DinG [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 934
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 11 AFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
A D+ETT + G R I++ G V K+ ++ ++T V P P +I +L+
Sbjct: 8 AVVDIETTGTSVKDGDR--IIQIGCAFVKNNKI--INTFATDVNPLTTVPAVIENLT--- 60
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GI+ V +P F D+A TV+ +L G ++ HN+ FD I +G P P
Sbjct: 61 -GISNARVRKAPPFDDLAGTVYSLLQGTVFVAHNV-NFDLPFINSELQRVGYPE-LPIQA 117
Query: 128 IDSLAL 133
+D+++L
Sbjct: 118 VDTVSL 123
>gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|448821251|ref|YP_007414413.1| ATP-dependent helicase DinG [Lactobacillus plantarum ZJ316]
gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|448274748|gb|AGE39267.1| ATP-dependent helicase DinG [Lactobacillus plantarum ZJ316]
Length = 936
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 11 AFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
A D+ETT + G R I++ G V K+ ++ ++T V P P +I +L+
Sbjct: 10 AVVDIETTGTSVKDGDR--IIQIGCAFVKNNKI--INTFATDVNPLTTVPAVIENLT--- 62
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GI+ V +P F D+A TV+ +L G ++ HN+ FD I +G P P
Sbjct: 63 -GISNARVRKAPPFDDLAGTVYSLLQGTVFVAHNV-NFDLPFINSELQRVGYPE-LPIQA 119
Query: 128 IDSLAL 133
+D+++L
Sbjct: 120 VDTVSL 125
>gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624]
gi|424056342|ref|ZP_17793863.1| DNA polymerase III, epsilon subunit [Acinetobacter nosocomialis
Ab22222]
gi|425741702|ref|ZP_18859842.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-487]
gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624]
gi|407441382|gb|EKF47888.1| DNA polymerase III, epsilon subunit [Acinetobacter nosocomialis
Ab22222]
gi|425491526|gb|EKU57808.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-487]
Length = 459
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + G R I+E GAI + +KL +H Y +PE S +
Sbjct: 235 ILDTETTGFYFQDGDR--IIEVGAIEMINRKLTGSSIHIY------INPEKPVGESENIH 286
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPA-PEPKGT 127
GI+ D + P +ADIADT+F+ L G HN FD + F +G PA E
Sbjct: 287 GISDDFLKDKPVYADIADTLFEYLKGAEIIAHNA-TFDMNFLDMEFRRVGLPALSEVCEV 345
Query: 128 IDSLALLTQR 137
D+LAL +
Sbjct: 346 TDTLALAKNK 355
>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
Length = 956
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 43 EELHNYSTLVRPADPELISSL---SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAG 99
E L +STLV+P + SL S R GIT D + S+P FA++A L G
Sbjct: 34 EVLETFSTLVQP-----VHSLPLNSSRLTGITADMLASAPRFAEVAPRFAAFLKNYPLVG 88
Query: 100 HNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ- 158
HN+ FD +R G P+P D+ L T R ++++LA G+
Sbjct: 89 HNV-EFDLRMLRAQ----GMRLPQP--AFDTFELATLLMPRTPA-YRLSALAATLGIHHD 140
Query: 159 QTHRSLDDVRMNLEVLKYC 177
+ HR+L D + ++ Y
Sbjct: 141 EAHRALSDADVTRQIFLYL 159
>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
Length = 331
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPA-DPELISSLSVRCNG 69
A DVETT R + I+ V + E H Y TLV P DP V +G
Sbjct: 20 AVVDVETTGLARDDR---IVSAAVYRVDARGEVEDHWY-TLVNPERDPG-----PVWIHG 70
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
+T + + +P F +IA + L GR+ HN + FD + + +A G AP + +
Sbjct: 71 LTSEVLEGAPLFPEIAGELSRRLDGRVLVAHNAV-FDWSMLAREYARAGITAPV-RRRLC 128
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
++A L + + K+ +LA +FG+ Q + H +LDD R+ E +
Sbjct: 129 TIA-LAKELALPLPNHKLETLAAHFGVEQRRAHHALDDARVLAEAFR 174
>gi|311741567|ref|ZP_07715391.1| probable DNA polymerase III epsilon subunit [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303737|gb|EFQ79816.1| probable DNA polymerase III epsilon subunit [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 442
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 58 ELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI 117
E + ++V +GIT D V +P FAD+A +FD L G + HN +FD +R
Sbjct: 143 EHFADINVSIHGITADDVKGAPAFADVAKELFDFLGGDVLVAHNA-QFDSTALRSGLLTA 201
Query: 118 GRPAPEPKGTID-SLALLTQRFGRRAG-----DMKMASLATYFGLGQQTHR-SLDDVRMN 170
G P T+ + +L R +A + K+ ++A + +H + +D R
Sbjct: 202 GAEVP----TVPLACSLALSRDASKAKVISVRNHKLPTVAAHLSAPDFSHHDATEDARAA 257
Query: 171 LEVLKYCATVLFLESSLPDIFTV 193
E++ A S+ D+FT
Sbjct: 258 GEIIARLAERFGHTGSIRDLFTA 280
>gi|380032554|ref|YP_004889545.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
gi|342241797|emb|CCC79031.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
Length = 934
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 11 AFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRC 67
A D+ETT + G R I++ G V K+ ++ ++T V P P +I +L+
Sbjct: 8 AVVDIETTGTSVKDGDR--IIQIGCAFVKNNKI--INTFATDVNPLTTVPAVIENLT--- 60
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GI+ V +P F D+A TV+ +L G ++ HN+ FD I +G P P
Sbjct: 61 -GISNARVRKAPPFDDLAGTVYSLLQGTVFVAHNV-NFDLPFINSELQRVGYPE-LPIQA 117
Query: 128 IDSLAL 133
+D+++L
Sbjct: 118 VDTVSL 123
>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
BAA-1200]
Length = 484
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 11 AFFDVETTVPTRPGQRF---AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
A D+ETT + R A L F V P Y +LV P P I R
Sbjct: 44 AIVDLETTGGSFDTDRITEIAFLRFDGGTVTP--------YHSLVHPERP--IPPFIRRL 93
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GI + V +P F+ +A + +L G I HN +FD +R AFA G P P T
Sbjct: 94 TGIGDETVAGAPPFSALAHELLPLLRGCILLAHNS-KFDYTFLRRAFARCGLPFAAP--T 150
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCATVL 181
+ ++ L++R + + S+ G+ + HR+ DDV L V Y T L
Sbjct: 151 LCTVQ-LSRRLYPQFYKHSLESIIERHGIAAASRHRATDDV---LAVADYLETAL 201
>gi|415836003|ref|ZP_11518479.1| DNA polymerase III subunit epsilon domain protein, partial
[Escherichia coli RN587/1]
gi|323191554|gb|EFZ76814.1| DNA polymerase III subunit epsilon domain protein [Escherichia coli
RN587/1]
Length = 155
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHN-ATFDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
Length = 234
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 14/185 (7%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGIT 71
F D ETT P Q I+E A+ V +++ H Y + P D E I + + +GIT
Sbjct: 5 FLDTETT-GLYPAQGHRIIEIAAVEVINRRITSQH-YHVYLNP-DRE-IDAGAQEVHGIT 60
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE--PKGTID 129
+ + P FAD+ D + HN FD + I +P E G ID
Sbjct: 61 LEFLQDKPRFADVVGEFLDFVQDSELIIHNA-PFDVGFLNAELGRIEKPGIESVASGIID 119
Query: 130 SLALLTQ-RFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFLESS 186
+L + + R G+R + +L +FG+ + R+L ++ E+L Y A ES
Sbjct: 120 TLKMAKEMRPGQRN---NLDALCRHFGI-DNSKRTLHGALLDAELLADVYLAMTRGQESL 175
Query: 187 LPDIF 191
+ D+
Sbjct: 176 IIDML 180
>gi|389844392|ref|YP_006346472.1| DNA polymerase III subunit alpha [Mesotoga prima MesG1.Ag.4.2]
gi|387859138|gb|AFK07229.1| DNA polymerase III, alpha chain [Mesotoga prima MesG1.Ag.4.2]
Length = 1412
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT P + I+E GAI + K E L +S+ V+P +SSL GIT
Sbjct: 405 FDLETT-GLNPKED-EIIEIGAIKM--KGNEILETFSSFVKPQKE--LSSLITSLTGITE 458
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE-IGRPAPEPKGTIDSL 131
D + + T + G I HN FD IR + + G P ID+L
Sbjct: 459 DMLSGAGTIKQVLPEFTKFAEGGILVAHNA-SFDYGFIRNSVKKYFGGDWEMP--CIDTL 515
Query: 132 ALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLK 175
AL + RA + ++ LG HR+ +D ++ EVLK
Sbjct: 516 ALAKSLY--RAKSYSLDNVVKRLKLGHFDHHRAYEDAKVTAEVLK 558
>gi|410030115|ref|ZP_11279945.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Marinilabilia sp. AK2]
Length = 268
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
++ IAFFD+E+T R I+E + + P EE+ ++L+ P P I
Sbjct: 6 KTPIAFFDLESTGTNISTDR--IVEISILKIHPDGKEEIK--TSLINPTIP--IPREVSL 59
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
+GI + V SPTF +++ + L G AG N+L+FD + E F G
Sbjct: 60 IHGIYDEDVKYSPTFKALSNDLHQFLAGADLAGFNVLKFDIPLLVEEFLRAG 111
>gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC
13950]
Length = 323
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + L ++TL+ DP+ I VR GIT V +PT +
Sbjct: 39 AITEIGAVKV--RGGVVLGEFATLI---DPQRSIPPQVVRLTGITTAMVSDAPTIDAVLP 93
Query: 87 TVFDIL---HGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR-- 141
+ G + HN FD +R A P P+ L T R RR
Sbjct: 94 MFLEFARLDQGAVLVAHNA-GFDIGFLRAAAQRCDIAWPRPQ------VLCTVRLARRVL 146
Query: 142 ----AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL---------KYCATVLFLESSL 187
A +++ASLA F + Q THR+LDD R ++VL + T L S L
Sbjct: 147 SREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRSYL 206
Query: 188 PDI 190
PD+
Sbjct: 207 PDV 209
>gi|418249549|ref|ZP_12875871.1| hypothetical protein MAB47J26_12707 [Mycobacterium abscessus 47J26]
gi|420951540|ref|ZP_15414785.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0626]
gi|420955710|ref|ZP_15418948.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0107]
gi|420961226|ref|ZP_15424453.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-1231]
gi|420991679|ref|ZP_15454829.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0307]
gi|420997517|ref|ZP_15460656.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0912-R]
gi|421001955|ref|ZP_15465082.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0912-S]
gi|353451204|gb|EHB99598.1| hypothetical protein MAB47J26_12707 [Mycobacterium abscessus 47J26]
gi|392159622|gb|EIU85316.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0626]
gi|392187709|gb|EIV13349.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0307]
gi|392188402|gb|EIV14039.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0912-R]
gi|392198473|gb|EIV24086.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0912-S]
gi|392251865|gb|EIV77335.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-1231]
gi|392254422|gb|EIV79887.1| DNA polymerase III epsilon subunit [Mycobacterium massiliense
2B-0107]
Length = 600
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + E L +TLV DP+ + VR GIT +V +P A +
Sbjct: 44 AITEIGAVKV--RGGEVLGELATLV---DPQRSLPPQIVRLTGITSAMLVDAPPIAQVLP 98
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR----- 141
+ G + HN FD ++ A + G P+P L T R RR
Sbjct: 99 AFLEFARGAVLVAHNA-GFDIGFLKAAARQCGIDWPQPA------VLCTVRLARRVLSRD 151
Query: 142 -AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A + + +LA G HR+LDD R ++VL
Sbjct: 152 EAPRVSLGALAQLLGASTTPNHRALDDARATVDVL 186
>gi|333379176|ref|ZP_08470900.1| hypothetical protein HMPREF9456_02495 [Dysgonomonas mossii DSM
22836]
gi|332885444|gb|EGK05693.1| hypothetical protein HMPREF9456_02495 [Dysgonomonas mossii DSM
22836]
Length = 256
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSV 65
R+ I FFD+ETT R I+E + V P EE+ R +PE+ I + +
Sbjct: 6 RNPIIFFDLETTGTDTVKDR--IVELSYLKVYPNGKEEMK-----TRRINPEMPIPAGAT 58
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAF 114
+GI+ + V PTF IA ++ D + G AG N RFD + E F
Sbjct: 59 AIHGISDEDVKDCPTFKQIAKSLADQMEGCDLAGFNSSRFDIPLLAEEF 107
>gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
51756]
gi|340781731|ref|YP_004748338.1| DNA polymerase III subunit epsilon [Acidithiobacillus caldus SM-1]
gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
51756]
gi|340555884|gb|AEK57638.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus SM-1]
Length = 475
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AF D+E T +R I+E G ILV P E+ +STL+ P + L ++S G
Sbjct: 9 LAFIDLENTGGHL--ERDRIIEVGIILVAPAGEPEV--WSTLINP-EIRLSPAIST-LTG 62
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
I P + +PTFA +A+ + + L GR+ H+ R D A +R+ + +G+
Sbjct: 63 IDPADLAHAPTFAQVAEPLREKLAGRLLIAHDA-RTDLAFLRQEWRRLGQ 111
>gi|238026493|ref|YP_002910724.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
catalytic domain-containing protein [Burkholderia glumae
BGR1]
gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
catalytic domain-containing protein [Burkholderia glumae
BGR1]
Length = 381
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+AF D+ETT + R I E G + V P + +S+L+ P P I + + G
Sbjct: 19 LAFVDLETTGGSATEHR--ITEIGVVEVGPNGVS---TWSSLIDPCQP--IPAFIQQLTG 71
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +P+FA IA ++ L GR + HN FD +R F G
Sbjct: 72 ITDAMVRGAPSFASIAAALYARLEGRFFIAHNA-SFDRGFLRAEFERAG 119
>gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus GG]
gi|385828155|ref|YP_005865927.1| DNA helicase [Lactobacillus rhamnosus GG]
gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
rhamnosus GG]
gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG]
Length = 933
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 8 SEIAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLS 64
+ A D+ETT + G R +++FG LV K+ + S ++ P + P+ I
Sbjct: 5 TTFAVVDLETTGTSVKDGDR--MIQFGCALVRHGKI--IQTISQMINPDRSVPQTIQ--- 57
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R GI+P+ +V++P F ++A + +L ++ HN+ FD + F IG P +
Sbjct: 58 -RLTGISPERLVAAPYFDEVAPALHQVLTKTVFVAHNV-NFDYPFLNAEFERIGLPKLQL 115
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGL 156
+ ID++ L Q +++ L T+F +
Sbjct: 116 EA-IDTVE-LAQVLLPEISSFRLSDLTTHFAI 145
>gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
Length = 185
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 32/172 (18%)
Query: 13 FDVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV----- 65
FD+ETT P R G I+E GA+ + ++ Y TLVRP + L S+++
Sbjct: 14 FDLETTGLSPERDG----IVEIGALRIRDGRVVTEDPYQTLVRPQN-SLGESVTIPWRAE 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAG------HNILRFDCARIREAFAEIG- 118
R +GI+ + VV++P+ A + + WAG HNI FD +R A G
Sbjct: 69 RIHGISNEMVVAAPSIAQVLPEFLE------WAGDAPLVAHNI-GFDSGFMRAAARHCGL 121
Query: 119 RPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG---QQTHRSLDDV 167
R AP+ + I ++ L + F R + SLA GL Q HRSL DV
Sbjct: 122 RWAPQRE--ICTVQLSRRAFPRER-RHNLDSLAGRLGLSFSPQGRHRSLGDV 170
>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
Length = 386
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT + R I E G + V P + +S+LV P P I S + G
Sbjct: 15 IVFVDLETTGGSTNEHR--ITEVGVVEVGPTGVT---RWSSLVDPQQP--IPSFIQQLTG 67
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
IT V +PTF IA +F L G+++ HN FD +R F +G
Sbjct: 68 ITNAMVRGAPTFEAIAPELFARLDGKLFVAHNA-SFDRGFLRGEFRRVG 115
>gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
Length = 236
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 10/164 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D ETT P + I+E G + + +++ H Y + P + + ++ +GIT
Sbjct: 6 LDTETT-GIDPAEGHRIIEIGCVELMERQITGRH-YHVYINPERE--VEAEAITVHGITN 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG--RPAPEPKGTIDS 130
+ + P FA IAD F+ + G HN FD + FA + R E G +DS
Sbjct: 62 EFLADKPKFAAIADEFFEFIKGAELVIHNAA-FDIGFMDSEFARLKPVRRTTEHCGVVDS 120
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
LA+ ++ + ++ +L +G+ ++R L ++ E+L
Sbjct: 121 LAIARKKHPGQKNNLD--ALCKRYGI-DNSNRELHGALLDAEIL 161
>gi|443305295|ref|ZP_21035083.1| hypothetical protein W7U_06465 [Mycobacterium sp. H4Y]
gi|442766859|gb|ELR84853.1| hypothetical protein W7U_06465 [Mycobacterium sp. H4Y]
Length = 633
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + L ++TL+ DP+ I VR GIT V +PT +
Sbjct: 52 AITEIGAVKV--RGGVVLGEFATLI---DPQRSIPPQVVRLTGITTAMVSDAPTIDAVLP 106
Query: 87 TVFDIL---HGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR-- 141
+ G + HN FD +R A P P+ L T R RR
Sbjct: 107 MFLEFARLDQGAVLVAHNA-GFDIGFLRAAAQRCDIAWPRPQ------VLCTVRLARRVL 159
Query: 142 ----AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL---------KYCATVLFLESSL 187
A +++ASLA F + Q THR+LDD R ++VL + T L S L
Sbjct: 160 SREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRSYL 219
Query: 188 PDI 190
PD+
Sbjct: 220 PDV 222
>gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 269-3]
gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 269-3]
gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
Length = 936
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-AD-PELISSLSVRCN 68
A D+ETT TR GQ I++FG ++ +++ + YS L+ P AD P+ + +L+
Sbjct: 11 AVVDLETT-GTRRGQD-RIIQFGCAIIKNRQI--IKTYSFLINPEADIPQAVQNLT---- 62
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI P V++ P F A + DIL ++ HNI FD + A P + I
Sbjct: 63 GIKPTDVINQPVFKKYAAQIEDILQDTVFVAHNI-NFDLPFLNAELAANSFPKLHNRA-I 120
Query: 129 DSLAL 133
D++ L
Sbjct: 121 DTVEL 125
>gi|410099905|ref|ZP_11294872.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
goldsteinii CL02T12C30]
gi|409217246|gb|EKN10224.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
goldsteinii CL02T12C30]
Length = 257
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSV 65
++ I FFD+ETT R I+E + V P EE + R +PE+ I S
Sbjct: 6 KNPIVFFDLETTGINIVKDR--IVEISFVKVHPNGKEE-----SKTRRINPEMPIPPEST 58
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+GIT + V PTF +IA ++ + G AG+N RFD + E F G K
Sbjct: 59 AIHGITDEDVKDCPTFKEIAKSLAAQIEGCDLAGYNSNRFDIPLLAEEFLRAGVDIDLNK 118
Query: 126 GTIDSLALLTQRFGRR----------------AGDMKMASLATYFGLGQQTHRSLDDVRM 169
+ + + +R A + ++ATY L Q R DD++
Sbjct: 119 RKFVDVQTIFHKMEQRTLSAAYKFYCDKSLENAHTAEADTMATYEILKAQLDRYPDDLQN 178
Query: 170 NLEVL-KYCA 178
+++ L KY +
Sbjct: 179 DIDFLSKYSS 188
>gi|375088852|ref|ZP_09735190.1| putative DnaQ family exonuclease/DinG family helicase
[Dolosigranulum pigrum ATCC 51524]
gi|374561817|gb|EHR33156.1| putative DnaQ family exonuclease/DinG family helicase
[Dolosigranulum pigrum ATCC 51524]
Length = 923
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN-- 68
A D+E T + +++F IL ++ L ++TLV P + + VR
Sbjct: 8 AIVDIEATSGSLHSDE-GMIQFACILFQDGRV--LEEFNTLVNP-----LKQVPVRIQEL 59
Query: 69 -GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
GIT V +P F +IA + ++L I+ HN+ FD + E F +G P+ E
Sbjct: 60 TGITQQDVDYAPLFEEIAPIIHELLQETIFVAHNV-AFDFEFLNEQFQRVGLPSLEIPA- 117
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLK 175
+D++ +L+Q A + L + G T H +L D R + +L+
Sbjct: 118 MDTV-VLSQILFPNANYYNLQELTEWLGYDLDTPHDALYDARATVFLLR 165
>gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
BAA-450]
Length = 246
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 18/178 (10%)
Query: 6 DRSEIAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELIS 61
+ + I D ETT R G Q I+E GA+ + +KL H + ++P D E I
Sbjct: 8 NHNRIVVLDTETTGMNREGGPHYQGHRIIEIGAVEIINRKLTGRH-FHVYIKP-DRE-IQ 64
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFA----EI 117
+V +GIT + +V P + D+ + + G HN FD + F I
Sbjct: 65 PDAVEVHGITDEFLVDKPEYQDVHKEFLEFIKGAELVAHNA-PFDTGFMDYEFNMLDPGI 123
Query: 118 GRPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
G+ K T D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 124 GKTDDYCKVT-DTLAMAKKIFPGKRN---NLDVLCDRYGI-DNSHRTLHGALLDAEIL 176
>gi|88801444|ref|ZP_01116972.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
gi|88782102|gb|EAR13279.1| DNA polymerase III, epsilon subunit [Polaribacter irgensii 23-P]
Length = 462
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 40/203 (19%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCN 68
A D+ETT GQ+ I E A++ KK+ + +++LV P P I+SL+
Sbjct: 4 AVVDIETTGNGPKGQK--ITEISALIFDGKKI--VDEFTSLVNPEQNIPAFITSLT---- 55
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GIT V ++P F +IA V +I I+ HN+ FD I+ F +G K
Sbjct: 56 GITNAMVRNAPRFFEIAKKVAEITENTIFVAHNV-NFDYNIIQAEFKSLGFDFKRKK--- 111
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLG----------QQTHRSLDDVRMNLEVLKYCA 178
L T R R+ + L +Y LG HR+ D E+L+
Sbjct: 112 ----LCTIRLTRKI----IPGLPSY-SLGNICTGENIPINGRHRAKGDAEATAELLR--- 159
Query: 179 TVLFLESSLPDIFTVNSWVSPNA 201
+E + FT+NS+++P +
Sbjct: 160 --RLIERD--ENFTINSFLNPKS 178
>gi|433648560|ref|YP_007293562.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium smegmatis JS623]
gi|433298337|gb|AGB24157.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium smegmatis JS623]
Length = 622
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 85/196 (43%), Gaps = 32/196 (16%)
Query: 14 DVETTVPTRPGQRF-AILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGI 70
D+ETT G+ AI E GA+ V + E L +TLV P P I +L+ GI
Sbjct: 37 DLETTGGRPSGEGHDAITEIGAVKV--RGGEVLGELATLVDPGRSIPPQIVALT----GI 90
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V ++PT + + + G + HN FD +R A + P+P
Sbjct: 91 TTAMVCNAPTIDSVLPSFLEFSRGAVLVAHNA-GFDIGFLRAAAERLHITWPKPA----- 144
Query: 131 LALLTQRFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL--------- 174
L T + RR A +++++LA F THR+LDD R ++VL
Sbjct: 145 -VLCTVKLARRVLTRDEAPSVRLSALARLFNATTTPTHRALDDARATVDVLHGLIERVGN 203
Query: 175 KYCATVLFLESSLPDI 190
+ T L S LPD+
Sbjct: 204 QGVHTYTDLRSYLPDV 219
>gi|255321503|ref|ZP_05362661.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
showae RM3277]
gi|255301359|gb|EET80618.1| mature parasite-infected erythrocyte surface antigen [Campylobacter
showae RM3277]
Length = 311
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 95/232 (40%), Gaps = 27/232 (11%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVR-PADPELISSLSVRCNGITP 72
D+ET+ GQ I+E GA+ + + E + + T V P PE IS L+ GIT
Sbjct: 77 DIETSGGINSGQ---IIEIGALKL--QNGEIIGKFETFVYAPYVPENISELT----GITA 127
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+ + ++P+ A + + L ++ HN+ RFD I +G G + +
Sbjct: 128 EHLKNAPSLAFVMEQFKVFLGQSVFVAHNV-RFDYGFISATLEALGY------GELLNRK 180
Query: 133 LLTQRFGRR---AGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPD 189
L T RR + + +L G+ HR+L D E+ KY L+ +
Sbjct: 181 LCTIDLARRTIASPKYGLGTLKEILGIDNTHHRALSDAIAAAEIFKYS-----LQKLPSE 235
Query: 190 IFTVNSWV--SPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENASNASPPD 239
+ T + S +A T R ++ G S KF++ N S +
Sbjct: 236 VRTTEDLIEFSKSAKTMKRLKTTTNEAGESVKFDDAVQADKFDDNKNLSAAN 287
>gi|387875533|ref|YP_006305837.1| hypothetical protein W7S_10695 [Mycobacterium sp. MOTT36Y]
gi|386788991|gb|AFJ35110.1| hypothetical protein W7S_10695 [Mycobacterium sp. MOTT36Y]
Length = 620
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + L ++TL+ DP+ I VR GIT V +PT +
Sbjct: 39 AITEIGAVKV--RGGVVLGEFATLI---DPQRSIPPQVVRLTGITTAMVSDAPTIDAVLP 93
Query: 87 TVFDIL---HGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR-- 141
+ G + HN FD +R A P P+ L T R RR
Sbjct: 94 MFLEFARLDQGAVLVAHNA-GFDIGFLRAAAQRCDIAWPRPQ------VLCTVRLARRVL 146
Query: 142 ----AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL---------KYCATVLFLESSL 187
A +++ASLA F + Q THR+LDD R ++VL + T L S L
Sbjct: 147 SREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRSYL 206
Query: 188 PDI 190
PD+
Sbjct: 207 PDV 209
>gi|379761596|ref|YP_005347993.1| hypothetical protein OCQ_21600 [Mycobacterium intracellulare
MOTT-64]
gi|406030383|ref|YP_006729274.1| hypothetical protein MIP_03183 [Mycobacterium indicus pranii MTCC
9506]
gi|378809538|gb|AFC53672.1| hypothetical protein OCQ_21600 [Mycobacterium intracellulare
MOTT-64]
gi|405128930|gb|AFS14185.1| Hypothetical protein MIP_03183 [Mycobacterium indicus pranii MTCC
9506]
Length = 633
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + L ++TL+ DP+ I VR GIT V +PT +
Sbjct: 52 AITEIGAVKV--RGGVVLGEFATLI---DPQRSIPPQVVRLTGITTAMVSDAPTIDAVLP 106
Query: 87 TVFDIL---HGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR-- 141
+ G + HN FD +R A P P+ L T R RR
Sbjct: 107 MFLEFARLDQGAVLVAHNA-GFDIGFLRAAAQRCDIAWPRPQ------VLCTVRLARRVL 159
Query: 142 ----AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL---------KYCATVLFLESSL 187
A +++ASLA F + Q THR+LDD R ++VL + T L S L
Sbjct: 160 SREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRSYL 219
Query: 188 PDI 190
PD+
Sbjct: 220 PDV 222
>gi|378768434|ref|YP_005196907.1| DNA polymerase III subunit epsilon [Pantoea ananatis LMG 5342]
gi|386080556|ref|YP_005994081.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis PA13]
gi|354989737|gb|AER33861.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis PA13]
gi|365187920|emb|CCF10870.1| DNA polymerase III, epsilon subunit [Pantoea ananatis LMG 5342]
Length = 243
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTF+DIAD D + G HN FD + F ++ R + +
Sbjct: 66 HGIADEFLLDKPTFSDIADEFLDYIRGAELVIHNA-SFDIGFMDYEFGKLQRGIEKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKITDSLAMARRMFPGKR 142
>gi|114773251|ref|ZP_01450486.1| hypothetical protein OM2255_00307 [Rhodobacterales bacterium
HTCC2255]
gi|114546370|gb|EAU49279.1| hypothetical protein OM2255_00307 [alpha proteobacterium HTCC2255]
Length = 313
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT + I E G + V ++ + Y TL+ P P I++L+ GI
Sbjct: 146 DIETTGGRATSHK--ITEIGMVKVINGQVVD--EYQTLLNPKRRIPRNITALT----GID 197
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V ++P FA++AD V G ++ HN+ FD I++ F + R K
Sbjct: 198 DVMVSNAPIFAEVADEVAQFTKGCVFVAHNV-NFDYGFIKQEFTRLERHFSRAK------ 250
Query: 132 ALLTQRFGRRA----GDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVLKYCATVLFLESS 186
L T R R+A +A+L +FG+ + HR++ D E+L E S
Sbjct: 251 -LCTVREMRKARPGLASYSLANLTRHFGIEMSRHHRAMSDAIAANELLTIINEHRLAEQS 309
Query: 187 LPDI 190
+ ++
Sbjct: 310 ISEL 313
>gi|403250856|ref|ZP_10917242.1| DNA polymerase III, alpha subunit (gram-positive type)
[actinobacterium SCGC AAA027-L06]
gi|402915805|gb|EJX36742.1| DNA polymerase III, alpha subunit (gram-positive type)
[actinobacterium SCGC AAA027-L06]
Length = 211
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 18/169 (10%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCNGIT 71
D+ETT P + AI E GA+ V K ++ ++T V P A P I+ ++ GIT
Sbjct: 14 DLETT-GASPKKGAAITEIGAVKV--KGGVQIGEFATFVNPLAAIPAYITEMT----GIT 66
Query: 72 PDAVVSSPTFADIADTVFDILHGR----IWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+ +P ++ + + GR + HN FD + ++ A +E+ P+ K T
Sbjct: 67 DLMLAHAPVIDEVFPSFIE-FAGREDHAVIVAHNA-PFDLSFLKNAASELEISWPKYK-T 123
Query: 128 IDSLALLTQRFGRR-AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+D++ + Q + + K+++LAT+FG + HR+LDD + E+L
Sbjct: 124 LDTVTIARQILTKEDVPNCKLSTLATFFGTKTEPNHRALDDAKATTEIL 172
>gi|163755942|ref|ZP_02163059.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
gi|161324113|gb|EDP95445.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
Length = 257
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
++ I FFD+ETT R I+E + V P +E + LV P P I + +
Sbjct: 6 KNPICFFDLETTGVEVAKDR--IVEIAILKVYPNGNKESKTW--LVNPEMP--IPAETSE 59
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
+GIT D V + PTF +++ +++++ AG+N RFD + E
Sbjct: 60 IHGITDDKVANEPTFKELSKEIYNMIKDSDLAGYNSDRFDIPLLAE 105
>gi|425899243|ref|ZP_18875834.1| DNA polymerase III, epsilon subunit [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397889737|gb|EJL06219.1| DNA polymerase III, epsilon subunit [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 252
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNG 69
D ETT +P G R I+E G + + ++L H Y R +D I +G
Sbjct: 8 LDTETTGMPVTDGHR--IIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIG-----VHG 60
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
IT + +V P FA++AD F+ + G HN FD I FA +GR
Sbjct: 61 ITNEFLVGKPRFAEVADEFFEFIQGAQLIIHNAA-FDVGFINNEFALMGR 109
>gi|319898197|ref|YP_004158290.1| DNA polymerase III subunit epsilon [Bartonella clarridgeiae 73]
gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
Length = 235
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE--LISSLSVRCN 68
FD ETT + R I+E G I + + L H Y +P+ +I V +
Sbjct: 6 FDTETTGLNKESDR--IIEIGCIEMINRYLTGRRFHVY------LNPQGVVIPDEVVAIH 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
G+T + + F DI D + D + G HN FD + + +P I
Sbjct: 58 GLTNERLKDEKKFDDIVDALLDFIDGATIVAHN-ANFDIGFLNAELERVNKPLVSINHVI 116
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ +RF G + L FG+ +HR L ++ E+L
Sbjct: 117 DTLAIARRRFP--TGPNSLDVLCKRFGI-DNSHRVLHGALLDAEIL 159
>gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
Length = 233
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 8/162 (4%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD ETT R I+E G + + + + + P D + ++ +GIT
Sbjct: 6 FDTETTGLDNKVDR--IIEIGCVEL-ENQFPTGRSLHLFINP-DGRAVHPDALAVHGITD 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
+ P FAD+AD + G + HN FD + F IG P +P ID+LA
Sbjct: 62 QFLADKPVFADLADEIAAFFDGAHYVAHNA-NFDMGFLNAEFDRIGLPPVDPGLVIDTLA 120
Query: 133 LLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
L +R G + +L +G+ HR+ ++ E+L
Sbjct: 121 LARRR--HPMGPNSLDALCRRYGI-DNAHRTKHGALLDAELL 159
>gi|386014775|ref|YP_005933052.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355]
gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355]
Length = 243
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRFA---ILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTF+DIAD D + G HN FD + F ++ R + +
Sbjct: 66 HGIADEFLLDKPTFSDIADEFLDYIRGAELVIHNA-SFDIGFMDYEFGKLQRGIEKTETF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKITDSLAMARRMFPGKR 142
>gi|262194125|ref|YP_003265334.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077472|gb|ACY13441.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-----ADPELISSLS 64
+ F D ETT + ILE AI V P+ LEE VRP ADPE +
Sbjct: 4 LVFIDCETT--GLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPE-----A 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-RPAPE 123
+ NG A + + D + +L G + AGHN+ FD + A+ +G RP
Sbjct: 57 LEVNGYRRRAWADAVSLGDAMAELAPMLEGAVLAGHNV-AFDRRFLEAAWDYVGHRPENL 115
Query: 124 PKGTIDSLALLTQRFGRRAGDMKMASL---ATYFG-LGQQTHRSLDDVRMNLEVLK 175
+D+ AL AG++ SL + G L + H + DDVR L V +
Sbjct: 116 DHHALDTAALAFPLL--MAGEIDSLSLTPVCAHLGVLRGEEHWAFDDVRACLGVAR 169
>gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
EO147]
gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
C6786]
Length = 240
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R ++E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARAGDR--VIEIGCVELLNRRLTGNNLHFYVNPGRDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA+I D + D + HN FD + F+ +G P G
Sbjct: 58 GLTTEFLSDKPKFAEIVDELRDFVRDAELIIHNA-PFDLGFLDAEFSLLGLPTFTDHCAG 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+L Q F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDTLVQAKQMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|429333148|ref|ZP_19213853.1| DNA polymerase III subunit epsilon [Pseudomonas putida CSV86]
gi|428762154|gb|EKX84363.1| DNA polymerase III subunit epsilon [Pseudomonas putida CSV86]
Length = 248
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNG 69
D ETT +P G R ++E G + + ++L H Y RP+D I +G
Sbjct: 11 LDTETTGMPVTDGHR--VIEIGCVELIGRRLSGRHFHVYLQPDRPSDEAAIG-----VHG 63
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR 119
IT +V P FA++AD F+ + G HN FD + FA IG+
Sbjct: 64 ITDAFLVGKPRFAEVADEFFEFIQGARLVIHNA-SFDVGFLNNEFALIGQ 112
>gi|373856605|ref|ZP_09599349.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 1NLA3E]
gi|372453584|gb|EHP27051.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 1NLA3E]
Length = 934
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT P + I++F A+++ K+ E +S+LV P P I L+ G+
Sbjct: 9 DLETT-GNSPKRGDKIIQFAAVVINNGKITE--QFSSLVNPQQKIPAFIEELT----GLN 61
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
+ V S+P F++IA+TV +L + HN+L FD + ++E
Sbjct: 62 DEMVKSAPLFSEIAETVAKMLEDAYFVAHNVL-FDLSFLQE 101
>gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
gi|421351953|ref|ZP_15802318.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-25]
gi|422308174|ref|ZP_16395327.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1035(8)]
gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
gi|395952398|gb|EJH63012.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-25]
gi|408618039|gb|EKK91128.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1035(8)]
Length = 247
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 10 IAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
I D ETT R G + I+E GA+ + +KL H + L D +L ++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQL---EAI 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+GIT + + P + D+ + D + G HN FD + FA++G +
Sbjct: 69 EVHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNA-PFDVGFMDYEFAKLGGAIGKTS 127
Query: 126 ---GTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRN---NLDILCERYGI-DNSHRTLHGALLDAEIL 176
>gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
gi|419830683|ref|ZP_14354168.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-1A2]
gi|419834366|ref|ZP_14357821.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-61A2]
gi|419837941|ref|ZP_14361379.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-46B1]
gi|421344651|ref|ZP_15795054.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-43B1]
gi|421354933|ref|ZP_15805265.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-45]
gi|422918072|ref|ZP_16952390.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02A1]
gi|423735898|ref|ZP_17709090.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-41B1]
gi|423822974|ref|ZP_17716984.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55C2]
gi|423856939|ref|ZP_17720791.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59A1]
gi|423883567|ref|ZP_17724378.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-60A1]
gi|423998497|ref|ZP_17741749.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02C1]
gi|424010236|ref|ZP_17753170.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-44C1]
gi|424017394|ref|ZP_17757223.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55B2]
gi|424020319|ref|ZP_17760102.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59B1]
gi|424625693|ref|ZP_18064154.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-50A1]
gi|424630180|ref|ZP_18068464.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-51A1]
gi|424634224|ref|ZP_18072324.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-52A1]
gi|424637302|ref|ZP_18075310.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55A1]
gi|424641209|ref|ZP_18079092.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-56A1]
gi|424649277|ref|ZP_18086940.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-57A1]
gi|443528195|ref|ZP_21094239.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-78A1]
gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
gi|341636954|gb|EGS61648.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02A1]
gi|395940731|gb|EJH51412.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-43B1]
gi|395954058|gb|EJH64671.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-45]
gi|408011634|gb|EKG49441.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-50A1]
gi|408017686|gb|EKG55173.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-52A1]
gi|408022829|gb|EKG60020.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-56A1]
gi|408023090|gb|EKG60270.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55A1]
gi|408032095|gb|EKG68691.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-57A1]
gi|408054267|gb|EKG89251.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-51A1]
gi|408620456|gb|EKK93468.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-1A2]
gi|408629324|gb|EKL02023.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-41B1]
gi|408634950|gb|EKL07185.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55C2]
gi|408640286|gb|EKL12082.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59A1]
gi|408640633|gb|EKL12421.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-60A1]
gi|408649188|gb|EKL20505.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-61A2]
gi|408852396|gb|EKL92224.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02C1]
gi|408856489|gb|EKL96184.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-46B1]
gi|408859543|gb|EKL99200.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55B2]
gi|408863266|gb|EKM02756.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-44C1]
gi|408866896|gb|EKM06267.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59B1]
gi|443453453|gb|ELT17276.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-78A1]
Length = 247
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 10 IAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
I D ETT R G + I+E GA+ + +KL H + L D +L ++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQL---EAI 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+GIT + + P + D+ + D + G HN FD + FA++G +
Sbjct: 69 EVHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNA-PFDVGFMDYEFAKLGGAIGKTS 127
Query: 126 ---GTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRN---NLDILCERYGI-DNSHRTLHGALLDAEIL 176
>gi|441500072|ref|ZP_20982242.1| DNA polymerase III epsilon subunit [Fulvivirga imtechensis AK7]
gi|441436163|gb|ELR69537.1| DNA polymerase III epsilon subunit [Fulvivirga imtechensis AK7]
Length = 455
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 48 YSTLVRPAD--PELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRF 105
Y TLV P P I+ L+ GI V S+PTF ++A VF++L R++ HN+ F
Sbjct: 36 YETLVNPGQYIPSYITGLT----GINQHMVESAPTFEEVAGEVFELLRDRVFIAHNV-HF 90
Query: 106 DCARIREAFAEIGRP 120
D + ++ F ++ P
Sbjct: 91 DYSFLKREFEKLKLP 105
>gi|312795584|ref|YP_004028506.1| DNA polymerase III subunit epsilon [Burkholderia rhizoxinica HKI
454]
gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia
rhizoxinica HKI 454]
Length = 247
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 20/200 (10%)
Query: 13 FDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCNG 69
D ETT + + G R I+E G + + ++L LH Y R +DP +L+V +G
Sbjct: 6 LDTETTGLNAKGGDR--IIEIGCVEIVNRQLTGNNLHFYVNPERDSDP---GALAV--HG 58
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKGT 127
+T + + P FA+IAD + D + HN FD + FA +G P
Sbjct: 59 LTTEFLRDKPKFAEIADALRDFVKDADIIIHNA-PFDIGFLNAEFAMLGLPPFCDHCGEV 117
Query: 128 IDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFLE 184
ID+L F G+R + +L FG+ HR+L ++ E+L Y A E
Sbjct: 118 IDTLVQAKAMFPGKRN---SLDALCERFGI-SNAHRTLHGALLDAELLADVYLAMTRGQE 173
Query: 185 SSLPDIFTVNSWVSPNATTR 204
S + D+ ATTR
Sbjct: 174 SLVIDMLADTPGSGSVATTR 193
>gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
Length = 249
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + R G R I+E G + + ++L LH Y R +DP +L+V +
Sbjct: 5 ILDTETTGLNARTGDR--IIEIGCVELVNRRLTGNNLHFYINPERDSDP---GALAV--H 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRP--APEPKG 126
G+T + + P FA+IADT+ D + HN FD + FA +G P +
Sbjct: 58 GLTTEFLSDKPKFAEIADTLRDFIQDAELIIHNA-PFDIGFLDAEFALLGLPPFSQYCGE 116
Query: 127 TIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLK--YCATVLFL 183
ID+L F G+R + +L FG+ HR+L ++ E+L Y A
Sbjct: 117 VIDTLVRAKSMFPGKRN---SLDALCDRFGI-SNAHRTLHGALLDSELLAEVYLAMTRGQ 172
Query: 184 ESSLPDIF 191
ES + D+
Sbjct: 173 ESLVIDML 180
>gi|372324149|ref|ZP_09518738.1| DNA polymerase III epsilon subunit related 3-5 exonuclease
[Oenococcus kitaharae DSM 17330]
gi|366982957|gb|EHN58356.1| DNA polymerase III epsilon subunit related 3-5 exonuclease
[Oenococcus kitaharae DSM 17330]
Length = 177
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 17/148 (11%)
Query: 36 LVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGR 95
L K + + N+ +L++P S + NG+T D V+ SP F D+ + +
Sbjct: 23 LTIVKDNQIVDNWYSLIKP--ETTFSYWNTAVNGLTADDVIDSPKFPDVWEQI-----KH 75
Query: 96 IWA------GHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMAS 149
++A GHNI RFD +++ G P P ++D+++ ++++F + K+ +
Sbjct: 76 LYADYPTVVGHNI-RFDNQVLKQTLRYYGLPVPH-YVSLDTVS-ISRKFHPDMVNHKLDT 132
Query: 150 LATYFGLGQQTHRSLD-DVRMNLEVLKY 176
+A+ GL + H + D + E+L Y
Sbjct: 133 VASELGLDLEHHHNASFDAQAAAEILIY 160
>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
gi|255267960|gb|EET61165.1| hypothetical protein BRYFOR_06810 [Marvinbryantia formatexigens DSM
14469]
Length = 1010
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 11/173 (6%)
Query: 8 SEIAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR 66
++ FD+ETT + ++ + ++E A+ V ++ +STLV P I + R
Sbjct: 23 ADYVVFDLETTGISSKYDE---VIEISAVKVEAGQV--TGEFSTLVNPGRK--IPPAASR 75
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
NGIT V + F+++ F + GHNI FD + + R P+
Sbjct: 76 VNGITDKMVAGALPFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVPD-ND 134
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGL-GQQTHRSLDDVRMNLEVLKYCA 178
+D+L LL + ++ LA ++G+ + HR+L+D MN +V A
Sbjct: 135 YVDTL-LLARAALPELSHHRLVDLAEHYGISAKGAHRALNDCHMNQKVYGKLA 186
>gi|399546332|ref|YP_006559640.1| Excinuclease cho [Marinobacter sp. BSs20148]
gi|399161664|gb|AFP32227.1| Excinuclease cho [Marinobacter sp. BSs20148]
Length = 483
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 19/163 (11%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
AF D+ETT + R I E G + + E + + TLV P IS + G
Sbjct: 13 FAFLDLETTGGSAATDR--ITEIG--IQFWRAGECVDQWQTLVNPKTR--ISPFIEQLTG 66
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
I+ V +P F DIAD + L G ++ HN RFD ++ F +GR
Sbjct: 67 ISNAMVADAPLFEDIADELEQRLDGVVFVAHNA-RFDYGFVKGEFRRLGR-------MFV 118
Query: 130 SLALLTQRFGRRA----GDMKMASLATYFGLGQ-QTHRSLDDV 167
+ L T + RR M +L GL Q Q HR++ DV
Sbjct: 119 AKVLCTVKLSRRLYPEFRRHNMDALIERHGLQQVQRHRAMGDV 161
>gi|379754261|ref|YP_005342933.1| hypothetical protein OCO_22490 [Mycobacterium intracellulare
MOTT-02]
gi|378804477|gb|AFC48612.1| hypothetical protein OCO_22490 [Mycobacterium intracellulare
MOTT-02]
Length = 620
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSVRCNGITPDAVVSSPTFADIAD 86
AI E GA+ V + L ++TL+ DP+ I VR GIT V +PT +
Sbjct: 39 AITEIGAVKV--RGGVVLGEFATLI---DPQRSIPPQVVRLTGITTAMVSDAPTIDAVLP 93
Query: 87 TVFDIL---HGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR-- 141
+ G + HN FD +R A P P+ L T R RR
Sbjct: 94 MFLEFARLDQGAVLVAHNA-GFDIGFLRAAAQRCDIAWPRPQ------VLCTVRLARRVL 146
Query: 142 ----AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL---------KYCATVLFLESSL 187
A +++ASLA F + Q THR+LDD R ++VL + T L S L
Sbjct: 147 SREEAPSVRLASLARLFAVTTQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRSYL 206
Query: 188 PDI 190
PD+
Sbjct: 207 PDV 209
>gi|86142317|ref|ZP_01060827.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
blandensis MED217]
gi|85831069|gb|EAQ49526.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
blandensis MED217]
Length = 257
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I FFD+ETT R I+E + V P EE H + LV P P I + +G
Sbjct: 9 ICFFDLETTGINVAKDR--IVEISVLKVLPNGKEEKHTW--LVNPTIP--IPPETTAVHG 62
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIRE 112
I + V PTF ++A+ + +++ AG N RFD + E
Sbjct: 63 IKDEDVADKPTFKELANEIHNLIKDSDLAGFNSNRFDIPLLAE 105
>gi|433655010|ref|YP_007298718.1| DNA polymerase III, alpha chain [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293199|gb|AGB19021.1| DNA polymerase III, alpha chain [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 1410
Score = 47.4 bits (111), Expect = 0.016, Method: Composition-based stats.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FD+ETT + +I+E GA+ + K + + T V P IS+ + GIT
Sbjct: 402 FDIETTGLSSIND--SIIEIGAVKI--KDCRIVDTFETFVNPQIH--ISNFITKLTGITD 455
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLA 132
D V P ++ + + G HN FD I+ +G P +D+L
Sbjct: 456 DMVKRYPPIDEVLPKFLEFIKGSTLVAHNA-NFDVTFIKTKAKNLGIEVDNP--VLDTLE 512
Query: 133 LLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIF 191
L++ + K+ ++A + G+ + HR++DD R E+ L E+ + +
Sbjct: 513 -LSRHMYENLKNYKLDTVAQHLGVSLENHHRAVDDARATAEIFLKSINKL-KENGIEKVN 570
Query: 192 TVNSWV 197
+NS++
Sbjct: 571 EINSYL 576
>gi|400406392|ref|YP_006589140.1| DNA polymerase III, epsilon subunit [secondary endosymbiont of
Heteropsylla cubana]
gi|400364645|gb|AFP85712.1| DNA polymerase III, epsilon subunit [secondary endosymbiont of
Heteropsylla cubana]
Length = 251
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 14 DVETTVPTRPGQRFA---ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
D ETT + G + I+E GA+ V ++L + + ++P LI + +GI
Sbjct: 12 DTETTGMNKSGPHYKDHRIIEIGAVEVINRRLSGQY-FHVYLQP--DRLIEQEAFTIHGI 68
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+ + PTF+DIAD D +HG HN FD I F+ + R P+
Sbjct: 69 SDKFLADKPTFSDIADKFLDFIHGAELIIHNA-PFDVGFIDYEFSLLNRGIPK 120
>gi|417319207|ref|ZP_12105765.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
Length = 240
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 22/180 (12%)
Query: 6 DRSEIAFFDVETTV------PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL 59
+ + I D ETT P G R I+E GA+ + +KL H + ++P D E
Sbjct: 8 EHNRIVVLDTETTGMNQEGGPHYLGHR--IIEIGAVEIINRKLTGRH-FHVYIKP-DRE- 62
Query: 60 ISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAE--- 116
I +++ +GIT + +V P +A I D + G HN FD + F +
Sbjct: 63 IQPEAIQVHGITDEFLVDKPEYASIHQEFLDFIKGAELVAHNA-SFDTGFMDYEFEKLDP 121
Query: 117 -IGRPAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
IG+ K T D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 122 TIGKTDDYCKVT-DTLAMAKKIFPGKRN---NLDVLCERYGI-DNSHRTLHGALLDAEIL 176
>gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114]
Length = 243
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 33/236 (13%)
Query: 8 SEIAFFDVETTV------PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELIS 61
+ I D ETT P G R I+E GA+ + +KL H + ++P LI
Sbjct: 9 NRIIVLDTETTGMNFSGGPVYEGHR--IVEIGAVEIINRKLTGNH-FHVYIKP--DRLID 63
Query: 62 SLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR-- 119
++ +GIT + + P + DI D + + G HN FD + F+++ +
Sbjct: 64 LEAIDVHGITDEFLYDKPEYKDIHDEFLEFIKGAELVAHNA-PFDVGFMDYEFSKLNKLI 122
Query: 120 -PAPEPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVLKYC 177
+ D+LA+ + F G+R + L +G+ +HR+L ++ E+
Sbjct: 123 GTTDQYCKITDTLAMAKKIFPGKRN---NLDVLCERYGI-DNSHRTLHGALLDAEI---- 174
Query: 178 ATVLFLESSLPDIFTVNSWVSPNATTRSRSNAKSSPEGTSQNLSTPSSKFKFENAS 233
L D++ + + + + S N+ S E T + L++ K A+
Sbjct: 175 ---------LADVYLLMTGGQTSLSFSSGENSSDSDEETIKRLNSGRKGLKVLRAT 221
>gi|395778899|ref|ZP_10459410.1| DNA polymerase III, epsilon subunit [Bartonella elizabethae
Re6043vi]
gi|395417074|gb|EJF83426.1| DNA polymerase III, epsilon subunit [Bartonella elizabethae
Re6043vi]
Length = 235
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE--LISSLSVRCN 68
FD ETT + R I+E G + + + L + H Y +PE +I V +
Sbjct: 6 FDTETTGLDKEKDR--IIEIGCVEMVDRYLTGRQFHVY------LNPEGVIIPDEVVAIH 57
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
G+T + + + +F+DI D + ++G HN FD I + +P +
Sbjct: 58 GLTNERLKNEKSFSDIVDEFLEFINGATMIAHN-ASFDIGFINAELKRVNKPLISVDNIL 116
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ ++F G + L FG+ +HR L ++ E+L
Sbjct: 117 DTLAMARRKFP--MGPNSLDILCKRFGI-DNSHRVLHGALLDAEIL 159
>gi|413963291|ref|ZP_11402518.1| DNA polymerase III subunit epsilon [Burkholderia sp. SJ98]
gi|413929123|gb|EKS68411.1| DNA polymerase III subunit epsilon [Burkholderia sp. SJ98]
Length = 381
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
I F D+ETT T R I E G + V P + + +++LV P P I S + G
Sbjct: 16 IVFVDLETTGGTFGVDR--ITEIGVVEVGPAGVSQ---WTSLVNPQRP--IPSFVQQLTG 68
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI 117
IT V +PTF +A + D + GR++ HN FD + +++ F +
Sbjct: 69 ITDAMVREAPTFEQLASGLLDRMKGRLFIAHNA-HFDHSFLKDEFRRV 115
>gi|262194028|ref|YP_003265237.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077375|gb|ACY13344.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 20/176 (11%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-----ADPELISSLS 64
+ F D ETT +R ILE AI V P+ L+E VRP ADPE +
Sbjct: 4 LVFIDCETT--GLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPE-----A 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-RPAPE 123
+ NG A + + D + +L G + AGHN+ FD + A+ +G RP
Sbjct: 57 LEVNGYRRRAWADAVSLGDAMAELAPMLEGAVLAGHNV-AFDRRFLEVAWDCVGHRPETL 115
Query: 124 PKGTIDSLALLTQRFGRRAGDMKMASL---ATYFG-LGQQTHRSLDDVRMNLEVLK 175
+D+ AL AG++ SL + G L + H + DDVR L V +
Sbjct: 116 DHHALDTAALAFPLL--MAGEIDSLSLTPVCAHLGVLRGEEHWAFDDVRACLGVAR 169
>gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania
ferrooxidans 2002]
Length = 476
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT R I E G +L+ +++E Y TLV P P I GI
Sbjct: 8 AIVDLETTGGHITRDR--ITEIGILLIDGERIE---RYETLVNPGQP--IPPFIENMTGI 60
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
+ V +P FA + +T+ + L GR+ HN RFD ++ F G
Sbjct: 61 SDAMVAEAPPFAALVETLLEKLQGRLLLAHNA-RFDYGFLKNEFKRAG 107
>gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
bacterium Broad-1]
gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
bacterium Broad-1]
Length = 580
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 14 DVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVRCNGIT 71
D+ETT + P I E GA+ V + E L + TLV P P I+ L+ GIT
Sbjct: 48 DLETTGNS-PDNGGMITEIGAVKV--RGGEVLGEFQTLVNPHTGIPPSIAVLT----GIT 100
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSL 131
V SSPT + + G + HN FD ++ A+ RP P + +D++
Sbjct: 101 NSMVASSPTIESVLPAFLEFAEGCVLVAHNAP-FDVGFLKHFAAKQERPWPRFE-VLDTV 158
Query: 132 ALLTQRFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
+ + R A + K+ SLA FG HR+L D R ++VL
Sbjct: 159 KIARRVITRDEAPNHKLGSLARVFGSPTTPNHRALQDARATVDVL 203
>gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2]
gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2]
Length = 920
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT R I++FG +L+ ++ ++ ++T + P IS I
Sbjct: 6 AVVDLETTGTDPAIDR--IIQFGCVLIQDGQV--INRFATDINP--DRRISKQIQNLTHI 59
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDS 130
T V +P F D+A T++++L ++ HNI FD + + G P+ E G ID+
Sbjct: 60 TNQQVKRAPYFEDVAHTIYNLLTQTVFVAHNIY-FDYHFLSQELIRCGMPSLEIPG-IDT 117
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQT-HRSLDDVRMNLEVLKYCATVL 181
+ L Q F ++ LA G + H++ D + +L Y +++
Sbjct: 118 VE-LAQVFLPTESSFRLGDLAESIGFVHENPHQADSDAEVTAALLLYIESIM 168
>gi|419759956|ref|ZP_14286241.1| DNA polymerase III PolC [Thermosipho africanus H17ap60334]
gi|407514995|gb|EKF49781.1| DNA polymerase III PolC [Thermosipho africanus H17ap60334]
Length = 1365
Score = 47.0 bits (110), Expect = 0.016, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 13 FDVETTVPTRPGQRF-AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGIT 71
FD+ETT RF I+EFGA+ K+ + + + V+P+ I+ + + GIT
Sbjct: 351 FDLETT---GTNARFDEIIEFGAVKYKDGKI--IDTFKSFVKPSKD--INDFTQKLTGIT 403
Query: 72 PDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEI-GRPAPEPKGTIDS 130
D + +P ++ + + G + HN FD IRE + ++ + P +D+
Sbjct: 404 NDMLKDAPGIEEVVPKFLEFIEGTVLVAHNA-DFDYGFIREVYRKMYDKDLIMP--YLDT 460
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
L L + + L YF LG + HR+ +D + E+
Sbjct: 461 LKLSRVILKGKVKSFGLGKLVEYFKLGPFKHHRAFEDASVTAELF 505
>gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
Length = 235
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 14/171 (8%)
Query: 8 SEIAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPEL-ISSLSV 65
S FD ETT + G R ++E AI + L + TL+ DPE I + +
Sbjct: 2 SRAVLFDTETTGLEPLGGDR--VIEVAAIELW-NDLPTGKVFHTLI---DPERDIPAEAS 55
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
R +G+T V P FA+IA + + HN FD + FA IGR A +
Sbjct: 56 RVHGMTSADVAGKPKFAEIAAELLEFFAEDPLVAHNA-PFDFGFLDAEFARIGRAALDRA 114
Query: 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGL---GQQTHRSLDDVRMNLEV 173
ID+LAL QRF + +L F + + TH +L D ++ EV
Sbjct: 115 RMIDTLALAKQRFPGMPNSLD--ALCRRFDIDLSARTTHNALLDCKLLAEV 163
>gi|262193953|ref|YP_003265162.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077300|gb|ACY13269.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP-----ADPELISSLS 64
+ F D ETT + ILE AI V P+ LEE VRP ADPE +
Sbjct: 4 LVFIDCETT--GLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDADPE-----A 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-RPAPE 123
+ NG A + + D + +L G + AGHN+ FD + + A+ +G RP
Sbjct: 57 LEVNGYRRRAWADAVSLGDAMSELAPMLEGAVLAGHNV-AFDRSFLEAAWDYVGHRPENL 115
Query: 124 PKGTIDSLALLTQRFGRRAGDMKMASL---ATYFG-LGQQTHRSLDDVRMNLEVLK 175
+D+ L AG++ SL + G L + H + DDVR L V +
Sbjct: 116 DHHALDTATLAFPLL--MAGEIDSLSLTPVCAHLGVLRGEEHWAFDDVRACLGVAR 169
>gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
VL426]
gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385]
gi|384425198|ref|YP_005634556.1| DNA polymerase III subunit epsilon [Vibrio cholerae LMA3984-4]
gi|417821565|ref|ZP_12468179.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE39]
gi|417825468|ref|ZP_12472056.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE48]
gi|422911072|ref|ZP_16945700.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-09]
gi|423957540|ref|ZP_17735283.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-40]
gi|423985520|ref|ZP_17738834.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-46]
gi|424660736|ref|ZP_18097983.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-16]
gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
VL426]
gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385]
gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3984-4]
gi|340039196|gb|EGR00171.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE39]
gi|340046953|gb|EGR07883.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE48]
gi|341632444|gb|EGS57310.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-09]
gi|408050109|gb|EKG85282.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-16]
gi|408656532|gb|EKL27626.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-40]
gi|408663637|gb|EKL34499.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-46]
Length = 247
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 10 IAFFDVETTVPTRPG----QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV 65
I D ETT R G + I+E GA+ + +KL H + L D +L ++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQL---EAI 68
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
+GIT + + P + D+ + D + G HN FD + FA++G +
Sbjct: 69 EVHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNA-PFDVGFMDYEFAKLGGAIGKTS 127
Query: 126 ---GTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
D+LA+ + F G+R + L +G+ +HR+L ++ E+L
Sbjct: 128 DFCKVTDTLAMAKRIFPGKRN---NLDILCERYGI-DNSHRTLHGALLDAEIL 176
>gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1]
Length = 237
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 10/164 (6%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
D ETT P Q I+E G + + +KL H + + P D E + + R +GI+
Sbjct: 6 LDTETT-GIDPKQGHRIIEIGCVEMIGRKLTNRH-FHVYINP-DRE-VEEEAFRVHGISN 61
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGR--PAPEPKGTIDS 130
+ + P F +IA FD + G HN FD + FA IG E G DS
Sbjct: 62 EFLADKPRFHEIAQEFFDFIKGAELIIHNA-PFDIGFMDHEFARIGGYPKTAEVCGVFDS 120
Query: 131 LALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
L ++ + ++ + L +G+ +HR L ++ E+L
Sbjct: 121 LVYARKKHPGQKNNLDI--LCRRYGI-DNSHRELHGALLDSEIL 161
>gi|300087648|ref|YP_003758170.1| DNA polymerase III subunit epsilon [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527381|gb|ADJ25849.1| DNA polymerase III, epsilon subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 260
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 74/180 (41%), Gaps = 12/180 (6%)
Query: 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNG 69
+ FFD+ETT R I+E + + P EE + S L+ P P I + +G
Sbjct: 10 LVFFDLETTGLNPLKDR--IVEITLVKLLPDGTEE--SRSRLIDPGIP--IPETATAIHG 63
Query: 70 ITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID 129
IT D V P+F IA + D L G G NI +FD + F G I
Sbjct: 64 ITDDRVAGQPSFNRIAKSFRDFLEGCDLCGFNIKKFDIPMLEAEFRRAGVDFSRAGRRII 123
Query: 130 SLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLESSLP 188
++ +F R + A+ + Y G H S D R E+L A + ES LP
Sbjct: 124 DTQVIFHKFHPRGLE---AAYSLYCGKQLANLHSSDADARACAEILS--AQLAAHESELP 178
>gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
rhamnosus LMS2-1]
gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus Lc 705]
gi|385835351|ref|YP_005873125.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Lactobacillus rhamnosus ATCC 8530]
gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
rhamnosus LMS2-1]
gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
rhamnosus Lc 705]
gi|355394842|gb|AER64272.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Lactobacillus rhamnosus ATCC 8530]
Length = 933
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 8 SEIAFFDVETT-VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLS 64
+ A D+ETT + G R +++FG LV K+ + S ++ P + P+ I
Sbjct: 5 TTFAVVDLETTGTSVKDGDR--MIQFGCALVRHGKI--IQTISQMINPDRSVPQTIQ--- 57
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
R GI+P+ +V++P F ++A + +L ++ HN+ FD + F IG P +
Sbjct: 58 -RLTGISPERLVAAPYFDEVAPALHQVLTKTVFVAHNV-NFDYPFLNAEFERIGLPKLQL 115
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFGL 156
+ ID++ L Q +++ L T+F +
Sbjct: 116 EA-IDTVE-LAQVLLPEISSFRLSDLTTHFAI 145
>gi|93005683|ref|YP_580120.1| DNA polymerase III subunit epsilon [Psychrobacter cryohalolentis
K5]
gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
K5]
Length = 532
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 12 FFDVETT-VPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRCN 68
D ETT + + G R ++E G + + +K E+LH Y R D E+I R +
Sbjct: 310 IMDTETTGLDPQKGDR--VIEVGIVEMIGRKFTGEKLHVYINPQRGMDEEVI-----RIH 362
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG-RPAPEPKGT 127
GI+ + PTF +A +++D + G HN FD + FA++G E
Sbjct: 363 GISEAFLTDKPTFDQVAQSLYDFMDGAEIIAHNA-SFDMNFLNMEFAKVGMHDFAERVKV 421
Query: 128 IDSLALLTQRF 138
DSL + Q++
Sbjct: 422 TDSLVMAKQQY 432
>gi|146299725|ref|YP_001194316.1| DNA polymerase III subunit epsilon [Flavobacterium johnsoniae
UW101]
gi|146154143|gb|ABQ04997.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
UW101]
Length = 459
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E A D+ETT G R I E I+ K + L Y TLV P P I L+
Sbjct: 5 EYAIVDIETTGGNASGSR--ITEIAIIIHDGKNV--LDRYETLVNPEQDIPPSIFGLT-- 58
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
GI + V ++P F DI++ V ++L RI+ HN+ FD + + + G
Sbjct: 59 --GINNEMVANAPIFDDISEKVLEMLTDRIFVAHNV-NFDYSFVHHQLEQAG 107
>gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1]
Length = 235
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 12 FFDVETTVPTRPGQRFAILEFGAILVCPKKL--EELHNYSTLVRPADPE--LISSLSVRC 67
FD ETT + R I+E G + + + L + H Y +P+ +I V
Sbjct: 5 IFDTETTGLDKDSDR--IIEIGCVEMVDRYLTKRQFHVY------LNPQGVIIPDEVVAI 56
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGT 127
+G+T + + + F DIAD + + G HN FD + + I +P
Sbjct: 57 HGLTNERLKNEKKFEDIADEFLEFIDGATMVAHN-ASFDISFLNAELGRINKPLISVDNV 115
Query: 128 IDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLDDVRMNLEVL 174
ID+LA+ Q+F G + L FG+ ++R L ++ E+L
Sbjct: 116 IDTLAIARQKFP--MGPNSLDVLCKRFGI-DNSNRVLHGALLDAEIL 159
>gi|406665659|ref|ZP_11073431.1| Rad3-related DNA helicase [Bacillus isronensis B3W22]
gi|405386524|gb|EKB45951.1| Rad3-related DNA helicase [Bacillus isronensis B3W22]
Length = 926
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 9/174 (5%)
Query: 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS 64
++ + A D+ETT + P +++ +V + E + YST + P P I
Sbjct: 2 KESQKYAIVDIETTGHS-PASGDRMIQIA--IVIMQGWEIVKKYSTFINPGKP--IPLFI 56
Query: 65 VRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEP 124
IT + V + F AD ++++L G ++ HN FD ++ F G
Sbjct: 57 QDLTNITDEDVKDALPFEAYADYIYELLEGAVFVAHNT-DFDLNFLQAEFNRAGLSKWHG 115
Query: 125 KGTIDSLALLTQRFGRRAGDMKMASLATYFG-LGQQTHRSLDDVRMNLEVLKYC 177
K ID++ L T+ + K++ LA F L Q HR+ DD +LK+C
Sbjct: 116 K-KIDTVEL-TKILFPMSLSYKLSDLANDFNILLQSAHRADDDALATAYLLKHC 167
>gi|347541032|ref|YP_004848458.1| DNA polymerase III subunit epsilon [Pseudogulbenkiania sp. NH8B]
gi|345644211|dbj|BAK78044.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania sp. NH8B]
Length = 476
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 11 AFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGI 70
A D+ETT R I E G +L+ +++E Y TLV P P I GI
Sbjct: 8 AIVDLETTGGHITRDR--ITEIGILLIDGERIE---RYETLVNPGQP--IPPFIENMTGI 60
Query: 71 TPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIG 118
+ V +P FA + +T+ + L GR+ HN RFD ++ F G
Sbjct: 61 SDAMVAEAPPFAALVETLLEKLQGRLLLAHNA-RFDYGFLKNEFKRAG 107
>gi|342215817|ref|ZP_08708464.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 375 str. F0436]
gi|341586707|gb|EGS30107.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 375 str. F0436]
Length = 1136
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Query: 4 TQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSL 63
+D E FDVETT + R I E GA+ V K + +S L+ P P I
Sbjct: 112 NKDNPEFVVFDVETTGFSPIHDR--ITEIGAVKV--KNGRVVDRFSQLINPLKP--IPPR 165
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
V I+ + V + P+F +A + D I HN FD A + ++F G
Sbjct: 166 VVELTSISNEMVANEPSFEGVAQSFLDFTKNCIMVAHNA-SFDMAFMTKSFERNGYDF-- 222
Query: 124 PKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
+ +D+L L + + + + K+ +L G+ HR+++D E+
Sbjct: 223 QRAYMDTLE-LAKNYIPKTKNYKLGTLCKKMGISLINAHRAVNDAEATAELF 273
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,654,207,440
Number of Sequences: 23463169
Number of extensions: 259517409
Number of successful extensions: 734813
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 2644
Number of HSP's that attempted gapping in prelim test: 733854
Number of HSP's gapped (non-prelim): 3052
length of query: 436
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 290
effective length of database: 8,933,572,693
effective search space: 2590736080970
effective search space used: 2590736080970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)