BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013825
(436 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10384|Y2191_MYCTU Uncharacterized protein Rv2191/MT2247 OS=Mycobacterium tuberculosis
GN=Rv2191 PE=4 SV=1
Length = 645
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 28 AILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87
AI E GA+ VC + L ++TLV P I VR GIT V ++PT +
Sbjct: 65 AITEIGAVKVCGGAV--LGEFATLVNPQ--HSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120
Query: 88 VFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR------ 141
F+ + HN FD +R A P+P+ L T R RR
Sbjct: 121 FFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQ------VLCTMRLARRVLSRDE 173
Query: 142 AGDMKMASLATYFGLGQQ-THRSLDDVRMNLEVL 174
A +++A+LA F + THR+LDD R ++VL
Sbjct: 174 APSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>sp|Q8XJR3|DPO3_CLOPE DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13
/ Type A) GN=polC PE=3 SV=1
Length = 1449
Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSLSVR 66
E FD+ETT + + I+E GA+ + K E + ++ST V P P I+ L+
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKL--KDGEIVDSFSTFVDPKVNIPYKITELT-- 487
Query: 67 CNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKG 126
IT + V PT ++ + + + HN FD I++ ++G+ P
Sbjct: 488 --SITQNMVNGQPTIDEVLPKFMEFVGNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNP-- 542
Query: 127 TIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFLES 185
+D++ L + +K+ +A + G+ + HR++DD + E+LK+ + E
Sbjct: 543 VMDTVPLARYLYPDLK-KVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEEM 601
Query: 186 SLPDIFTVN 194
+ D+ T+N
Sbjct: 602 DIHDVKTLN 610
>sp|O83649|DPO3E_TREPA DNA polymerase III subunit epsilon OS=Treponema pallidum (strain
Nichols) GN=dnaQ PE=3 SV=1
Length = 215
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 16/174 (9%)
Query: 7 RSEIAF--FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRP--ADPELISS 62
+AF FD ETT R I+E GA+ K + + +STL+ P A P +S
Sbjct: 10 HEHVAFTAFDTETTGLKAEEDR--IIEIGAVTFDRKGI--IARFSTLIFPDRAIPPDVSK 65
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
+ N IT D +V+ P F +I + G + HN FD + + + + P
Sbjct: 66 I----NHITDDMLVNKPRFCEIVSDFSRFIKGTVLVAHN-ANFDVEFLNAELS-LCKKQP 119
Query: 123 EPKGTIDSLALLTQRF-GRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
+D+ A+ F G ++ +LA FGL HR+ DD R+ +E+
Sbjct: 120 LSHKVVDTYAMAQAVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELF 173
>sp|P03007|DPO3E_ECOLI DNA polymerase III subunit epsilon OS=Escherichia coli (strain K12)
GN=dnaQ PE=1 SV=1
Length = 243
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ PTFA++AD D + G HN FD + F+ + R P+
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAA-FDIGFMDYEFSLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLA+ + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>sp|P0A1G9|DPO3E_SALTY DNA polymerase III subunit epsilon OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=dnaQ PE=3 SV=1
Length = 243
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>sp|P0A1H0|DPO3E_SALTI DNA polymerase III subunit epsilon OS=Salmonella typhi GN=dnaQ PE=3
SV=1
Length = 243
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ V ++L H Y R DPE
Sbjct: 11 LDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFG-----V 65
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK-- 125
+GI + ++ P FAD+ D D + G HN FD + F + R P+
Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIPKTNTF 124
Query: 126 -GTIDSLALLTQRF-GRR 141
DSLAL + F G+R
Sbjct: 125 CKVTDSLALARKMFPGKR 142
>sp|Q8RA32|DPO3_THETN DNA polymerase III PolC-type OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=polC PE=3 SV=1
Length = 1401
Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 11/167 (6%)
Query: 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCN 68
E FD+ETT + I+E GA+ + KK+ + + T V P P ISS +
Sbjct: 387 EFVVFDIETTGLSNINDE--IIEIGAVKIKNKKI--VDTFETFVNPQIP--ISSFITKLT 440
Query: 69 GITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTI 128
GI V +P ++ + G + HN FD + I+ ++G +
Sbjct: 441 GIDESMVKDAPLIEEVLPKFLEFAKGAVLVAHNA-NFDVSFIKSKAKKLGLTVENT--VL 497
Query: 129 DSLALLTQRFGRRAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVL 174
D+L L++ + + K+ +LA +F + HR+++D + E+
Sbjct: 498 DTLE-LSRHLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKATAEIF 543
>sp|Q9CPE0|DPO3E_PASMU DNA polymerase III subunit epsilon OS=Pasteurella multocida (strain
Pm70) GN=dnaQ PE=3 SV=1
Length = 253
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 1 MGPTQDRSEIAFFDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPA 55
M P + D ETT + G + I+E GA+ + ++L H Y RP
Sbjct: 1 MTPVNQPTRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPV 60
Query: 56 DPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHN 101
DP+ +++ +GIT + + P F ++A D + G HN
Sbjct: 61 DPD-----AIKVHGITDEMLADKPMFNEVAQQFIDYIQGAELLIHN 101
>sp|P57337|DPO3E_BUCAI DNA polymerase III subunit epsilon OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=dnaQ PE=3 SV=1
Length = 237
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 6 DRSEIAFFDVETTVPTR---PGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISS 62
+R D ETT + P I+E GA+ + + +N+ ++P I S
Sbjct: 2 NRKRTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTG-NNFHVYIQPGRS--IES 58
Query: 63 LSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP 122
+++ +GIT ++ P F DIAD+ + + I HN FD I + + +
Sbjct: 59 GALKVHGITNKFLLDKPIFKDIADSFLNYIKNSILVIHNA-SFDVGFINQELEILNKKIK 117
Query: 123 EPK--GTIDSLALLTQRF-GRRAGDMKMASLATYFGLGQQTHRSL 164
ID+L + + F G++ + +L T + + ++HR+L
Sbjct: 118 INTFCSIIDTLKIARELFPGKKNT---LDALCTRYKIN-KSHRNL 158
>sp|Q8CP71|DING_STAES Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=dinG PE=3 SV=1
Length = 902
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
Query: 11 AFFDVETTVPTRPGQRF---AILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSV 65
A D+ETT G + I++ G V ++ + Y +++R P I +L+
Sbjct: 7 AVVDLETT-----GNQLDYDEIIQIGITFVRQNQV--IDTYHSMIRTDLEIPPFIQALT- 58
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
I + +V +P F ++AD ++ ++ ++ HNI FD I++AF E +PK
Sbjct: 59 ---SIEEEMLVQAPYFNEVADDIYQLIKDCVFVAHNI-SFDLNFIKKAF-EKCNIQFKPK 113
Query: 126 GTIDSLALLTQRF 138
+D+L L F
Sbjct: 114 RVMDTLELFKIAF 126
>sp|Q5HP88|DING_STAEQ Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=dinG PE=3
SV=1
Length = 902
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
Query: 11 AFFDVETTVPTRPGQRF---AILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSV 65
A D+ETT G + I++ G V ++ + Y +++R P I +L+
Sbjct: 7 AVVDLETT-----GNQLDYDEIIQIGITFVRQNQV--IDTYHSMIRTDLEIPPFIQALT- 58
Query: 66 RCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPK 125
I + +V +P F ++AD ++ ++ ++ HNI FD I++AF E +PK
Sbjct: 59 ---SIEEEMLVQAPYFNEVADDIYQLIKDCVFVAHNI-SFDLNFIKKAF-EKCNIQFKPK 113
Query: 126 GTIDSLALLTQRF 138
+D+L L F
Sbjct: 114 RVMDTLELFKIAF 126
>sp|P43745|DPO3E_HAEIN DNA polymerase III subunit epsilon OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaQ PE=3
SV=1
Length = 256
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 13 FDVETTVPTRPGQRF---AILEFGAILVCPKKL--EELHNYSTLVRPADPELISSLSVRC 67
D ETT + G + I+E GA+ + ++ H Y RP DP+ +++
Sbjct: 10 LDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPD-----AIKV 64
Query: 68 NGITPDAVVSSPTFADIADTVFDILHGRIWAGHN 101
+GIT + + P F ++A D ++G HN
Sbjct: 65 HGITDEMLADKPEFKEVAQDFLDYINGAELLIHN 98
>sp|A5IJJ8|DPO3_THEP1 DNA polymerase III PolC-type OS=Thermotoga petrophila (strain RKU-1
/ ATCC BAA-488 / DSM 13995) GN=polC PE=3 SV=1
Length = 1367
Score = 38.5 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88
I+E GA+ + ++ + Y TL++P+ IS S GIT + + + + ++
Sbjct: 375 IIEIGAVKIQDGQI--VDEYHTLIKPSRE--ISRRSSEITGITQEMLENKRSIEEVLPEF 430
Query: 89 FDILHGRIWAGHNILRFDCARIREAFAEI-GRPAPEPKGTIDSLALLTQRFGRRAGDMKM 147
L I HN FD +R ++ G P ID+LAL R+ +
Sbjct: 431 LGFLENSIIVAHNA-NFDYRFLRLWIKKVMGLDWERP--YIDTLALAKSLLKMRS--YSL 485
Query: 148 ASLATYFGLGQ-QTHRSLDDVRMNLEVL 174
S+ GLG + HR+LDD R+ +V
Sbjct: 486 DSVVEKLGLGPFRHHRALDDARVTAQVF 513
>sp|P54394|DING_BACSU Probable ATP-dependent helicase DinG homolog OS=Bacillus subtilis
(strain 168) GN=dinG PE=3 SV=1
Length = 931
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPAD--PELISSL 63
++ DVETT P + I++ A+++ ++ E +S + P P I L
Sbjct: 2 NKQRFVVIDVETT-GNSPKKGDKIIQIAAVVIENGQITE--RFSKYINPNKSIPAFIEQL 58
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
+ GI+ V + F +A+ VF +L G + HNI FD ++ + G P+
Sbjct: 59 T----GISNQMVENEQPFEAVAEEVFQLLDGAYFVAHNI-HFDLGFVKYELHKAGFQLPD 113
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 48 YSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNI 102
Y VRP E ++ +GI PD + + F D+ V +IL GR GH +
Sbjct: 261 YDKYVRPT--ERVTDYRTAVSGIRPDDIKNGEAFKDVQAEVAEILRGRTLVGHAV 313
>sp|Q49XR1|DING_STAS1 Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=dinG PE=3 SV=1
Length = 900
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 29 ILEFGAILVCPKKLEELHNYSTLVRP--ADPELISSLSVRCNGITPDAVVSSPTFADIAD 86
I++ G V K+ + Y ++++ P I +L+ I D + +P F +IA+
Sbjct: 23 IIQIGITFVRENKI--IGTYHSMIKTDLEIPPFIQALT----SIEEDMLNQAPYFHEIAE 76
Query: 87 TVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRF 138
++ + G I+ HN+ FD I+++F + PK +D+L L F
Sbjct: 77 DIYKQIDGCIFVAHNV-AFDLNFIKKSFKQ-CHINYRPKKVMDTLELFKVAF 126
>sp|B8F3A4|DXS_HAEPS 1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus parasuis
serovar 5 (strain SH0165) GN=dxs PE=3 SV=1
Length = 615
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 22 RPGQRFAILEFGAILVCPKKLEELHNYSTL----VRPADPELISSLSVR 66
+ G++ AIL FGA+L K++ E HNY+ + +P D LI+ L+ R
Sbjct: 497 KQGEKVAILNFGALLNEAKQVAETHNYTLVDMRFAKPLDEALIAELADR 545
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 48 YSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNI 102
Y + VRP E+I+ +GI+P + + + + V +IL GRI GH +
Sbjct: 150 YDSYVRPK--EMITDWRTHVSGISPKHMAEARSLEQVQKDVAEILDGRILVGHAV 202
>sp|Q08880|DPO3E_BUCAP DNA polymerase III subunit epsilon OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=dnaQ PE=3 SV=2
Length = 233
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 48 YSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDC 107
+ T ++P LI S + + +GIT D + P+F DIA F+ + HN FD
Sbjct: 47 FHTYIKP--NRLIESDASKIHGITDDFLSDKPSFKDIAKDFFNYIKNSELIIHNA-SFDV 103
Query: 108 ARIREAFAEIGRPAPEPK---GTIDSLALLTQRF 138
I + F+ + + + ID+L + + F
Sbjct: 104 GFINQEFSMLTKKIQDISNFCNIIDTLKIARKLF 137
>sp|O68045|DPO3E_RHOCB DNA polymerase III subunit epsilon-like protein OS=Rhodobacter
capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=dnaQ PE=3 SV=1
Length = 704
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Query: 6 DRSEIAFFDVETT--VPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSL 63
D+ FD ETT PT + I++ A+ + + + TLV P P I +
Sbjct: 506 DKLTFVVFDTETTGLFPTGGDE---IVQIAAVRIVNGRRVAGEVFDTLVNPGRP--IPAA 560
Query: 64 SVRCNGITPDAVVSSPTFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE 123
S +GIT V ++P A++ G + HN FD +R IG+
Sbjct: 561 STAVHGITEAMVATAPAIAEVGRRFHKFAEGAVLVAHNA-PFDLEFLRRKELLIGKNFDN 619
Query: 124 PKGTIDSLALLTQRFG 139
P +D++ L FG
Sbjct: 620 P--VLDTVLLSAVVFG 633
>sp|B0BSL0|DXS_ACTPJ 1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=dxs PE=3
SV=1
Length = 617
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 24 GQRFAILEFGAILVCPKKLEELHNYST----LVRPADPELISSLS 64
GQ+ AIL FG +L + + E HNY+ V+P D +L++ L+
Sbjct: 499 GQKVAILNFGPLLNEARIVAEKHNYTLADMRFVKPLDEQLVAELA 543
>sp|B3H050|DXS_ACTP7 1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=dxs PE=3
SV=1
Length = 617
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 24 GQRFAILEFGAILVCPKKLEELHNYST----LVRPADPELISSLS 64
GQ+ AIL FG +L + + E HNY+ V+P D +L++ L+
Sbjct: 499 GQKVAILNFGPLLNEARIVAEKHNYTLADMRFVKPLDEQLVAELA 543
>sp|A3MYS9|DXS_ACTP2 1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=dxs PE=3
SV=1
Length = 617
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 24 GQRFAILEFGAILVCPKKLEELHNYST----LVRPADPELISSLS 64
GQ+ AIL FG +L + + E HNY+ V+P D +L++ L+
Sbjct: 499 GQKVAILNFGPLLNEARIVAEKHNYTLADMRFVKPLDEQLVAELA 543
>sp|Q92JF7|SCA2_RICCN Putative surface cell antigen sca2 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=sca2 PE=3 SV=1
Length = 1795
Score = 34.3 bits (77), Expect = 1.9, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 225 SKFKFENASNASPPDQGKEEIHPIFSLVTQGTAEVDSVLAVTTADQPNPFDMSQLSNQME 284
S + EN++N ++ +E +F + T + S T D P D ++ S Q +
Sbjct: 1329 SDIQSENSNNEKKVERLDQEKLQLFKQENEATNDESS-----TKDDTQPEDSNKKSEQSD 1383
Query: 285 TQS------LQPDDTMEDKSAPESREMCSTASVSEGSSGYAGFMEPDEVSLSSISD 334
+++ L +D+ DKS+ + + + + S E +GYA E E S S+ +
Sbjct: 1384 SKTALSPRLLSSNDSKNDKSSDDKKSLLALRSSDEDDTGYATDEEELEESNSTTDE 1439
>sp|Q7VNP7|DXS_HAEDU 1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=dxs PE=3 SV=1
Length = 617
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 24 GQRFAILEFGAILVCPKKLEELHNYSTL----VRPADPELISSLS 64
G++ AIL FGA+L +++ HNY+ + V+P D LIS L+
Sbjct: 500 GKKVAILNFGALLSEAQEVAISHNYTLVDMRFVKPLDKTLISELA 544
>sp|P13267|DPO3_BACSU DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168)
GN=polC PE=1 SV=2
Length = 1437
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 13 FDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITP 72
FDVETT + I+E A+ V K E + + P P +S+ + GIT
Sbjct: 424 FDVETTGLSAVYD--TIIELAAVKV--KGGEIIDKFEAFANPHRP--LSATIIELTGITD 477
Query: 73 DAVVSSPTFADIADTVFDILHGRIWAGHNIL-----RFDCARIREAFAEIGRPAPEPKGT 127
D + +P D+ D + D R W G +IL FD + A+ ++
Sbjct: 478 DMLQDAP---DVVDVIRDF---REWIGDDILVAHNASFDMGFLNVAYKKLLEVEKAKNPV 531
Query: 128 IDSLAL 133
ID+L L
Sbjct: 532 IDTLEL 537
>sp|P17058|CRTC_RHOCB Hydroxyneurosporene dehydrogenase OS=Rhodobacter capsulatus (strain
ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtC PE=4 SV=1
Length = 281
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 31 EFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVFD 90
E+GA+ KL +L L P ++ + VR +TPDA + FA IAD D
Sbjct: 75 EWGAL----PKLGKLKGRVVLT----PRAVTGVEVR---LTPDAGHTWRPFAPIADVEVD 123
Query: 91 ILHGRIWAGHNIL 103
+ G W GH
Sbjct: 124 LAPGHKWTGHGYF 136
>sp|Q8IV48|ERI1_HUMAN 3'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE=1 SV=3
Length = 349
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 10 IAFFDVETTVPTRPGQRFA--ILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRC 67
I D E T F I+EF +L+ LE + VRP +S +
Sbjct: 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISL 189
Query: 68 NGITPDAVVSSPTFADIADTVFDIL 92
GIT D V + TF + V D +
Sbjct: 190 TGITQDQVDRADTFPQVLKKVIDWM 214
>sp|Q3L8P3|SCA2_RICSI Putative surface cell antigen sca2 OS=Rickettsia sibirica GN=sca2
PE=3 SV=1
Length = 1812
Score = 32.3 bits (72), Expect = 7.5, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 264 AVTTADQPNPFDMSQLSNQMETQS------LQPDDTMEDKSAPESREMCSTASVSEGSSG 317
A +T D P D ++ S Q ++++ L +D+ DKS+ + + + + S E +G
Sbjct: 1347 ASSTKDDTQPEDSNKKSEQSDSKTALSPRLLSSNDSKNDKSSDDKKSLLALRSSDEDDTG 1406
Query: 318 YAGFMEPDEVSLSSISD 334
YA E E S S+ ++
Sbjct: 1407 YATDEEELEESNSTTNE 1423
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,195,236
Number of Sequences: 539616
Number of extensions: 6179819
Number of successful extensions: 17261
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 17219
Number of HSP's gapped (non-prelim): 90
length of query: 436
length of database: 191,569,459
effective HSP length: 120
effective length of query: 316
effective length of database: 126,815,539
effective search space: 40073710324
effective search space used: 40073710324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)