Query 013825
Match_columns 436
No_of_seqs 197 out of 1267
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1j_A POLIII, DNA polymerase 100.0 1.1E-33 3.8E-38 260.0 19.8 170 3-182 7-177 (186)
2 1w0h_A 3'-5' exonuclease ERI1; 100.0 1.4E-32 4.8E-37 254.0 19.7 178 3-181 5-195 (204)
3 1y97_A Three prime repair exon 100.0 3.9E-32 1.3E-36 257.4 19.2 179 1-183 3-212 (238)
4 2gui_A DNA polymerase III epsi 100.0 1.5E-31 5E-36 246.2 20.9 165 8-179 9-183 (194)
5 3mxm_B Three prime repair exon 100.0 1.9E-32 6.4E-37 263.2 15.5 173 7-183 11-217 (242)
6 2f96_A Ribonuclease T; RNAse, 100.0 2.6E-31 8.7E-36 250.6 16.9 173 5-184 26-216 (224)
7 1zbh_A 3'-5' exonuclease ERI1; 100.0 1.5E-30 5.2E-35 256.8 21.8 174 7-181 77-263 (299)
8 3u3y_B Three prime repair exon 100.0 2.5E-31 8.6E-36 265.6 16.3 172 7-183 11-217 (314)
9 2xri_A ERI1 exoribonuclease 3; 100.0 1.5E-30 5E-35 246.2 18.2 172 8-180 31-213 (224)
10 3v9w_A Ribonuclease T; DEDD nu 100.0 2.9E-29 9.9E-34 237.9 21.3 172 5-183 34-223 (235)
11 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 9.7E-30 3.3E-34 257.2 18.1 174 7-181 127-313 (349)
12 3cg7_A CRN-4, cell death-relat 100.0 2.2E-29 7.6E-34 250.1 16.2 171 8-180 19-208 (308)
13 2igi_A Oligoribonuclease; RNAs 100.0 8E-29 2.7E-33 225.4 12.9 160 6-182 3-178 (180)
14 3tr8_A Oligoribonuclease; tran 100.0 1.4E-28 4.7E-33 228.9 11.9 164 3-183 4-183 (186)
15 2qxf_A Exodeoxyribonuclease I; 100.0 1.3E-27 4.6E-32 250.7 18.0 174 1-180 2-200 (482)
16 2gbz_A Oligoribonuclease; ORN, 99.9 6.3E-28 2.1E-32 223.6 12.5 162 6-182 7-182 (194)
17 1wlj_A Interferon stimulated g 99.9 2.5E-28 8.7E-33 225.1 9.6 160 6-182 3-170 (189)
18 4hec_A Putative uncharacterize 99.1 5.7E-10 1.9E-14 104.3 10.9 146 10-179 24-180 (190)
19 2kfn_A Klenow fragment of DNA 99.0 8.1E-09 2.8E-13 110.9 17.0 143 8-182 26-194 (605)
20 4gmj_B CCR4-NOT transcription 98.6 2.3E-06 8E-11 84.4 17.6 170 8-183 34-247 (285)
21 1x9m_A DNA polymerase; DNA plo 98.5 1E-07 3.4E-12 104.1 8.4 137 10-181 1-183 (698)
22 1qht_A Protein (DNA polymerase 98.4 3.9E-06 1.3E-10 92.7 16.2 147 7-179 134-328 (775)
23 1noy_A Protein (DNA polymerase 98.3 9.7E-06 3.3E-10 82.5 14.4 167 7-177 105-335 (388)
24 3iay_A DNA polymerase delta ca 98.2 3.3E-05 1.1E-09 86.9 17.4 157 7-177 248-465 (919)
25 1s5j_A DNA polymerase I; repli 98.1 2.6E-05 8.7E-10 87.0 14.3 156 7-174 189-386 (847)
26 2d5r_A CCR4-NOT transcription 98.0 0.00019 6.6E-09 69.6 17.5 170 8-183 24-237 (252)
27 1uoc_A POP2; hydrolase, DEDD n 97.9 0.00042 1.4E-08 68.5 18.0 173 6-182 36-266 (289)
28 2p51_A SPCC18.06C protein; DED 97.9 0.00048 1.6E-08 69.2 18.0 172 6-184 43-259 (333)
29 2gv9_A DNA polymerase; polymer 97.7 0.00039 1.3E-08 80.2 16.1 167 7-178 319-551 (1193)
30 4dfk_A DNA polymerase I, therm 97.7 6.2E-05 2.1E-09 80.1 8.4 122 5-181 7-128 (540)
31 3k59_A POL II, DNA polymerase 97.4 0.0035 1.2E-07 69.5 17.2 149 6-177 151-349 (786)
32 3qex_A DNA polymerase, GP43; d 97.4 0.0025 8.5E-08 71.6 16.0 165 6-176 106-337 (903)
33 3saf_A Exosome component 10; e 96.3 0.052 1.8E-06 56.1 14.5 134 7-185 128-281 (428)
34 2a1r_A Poly(A)-specific ribonu 96.2 0.028 9.5E-07 58.1 11.8 97 80-183 269-399 (430)
35 3d45_A Poly(A)-specific ribonu 96.1 0.011 3.9E-07 62.2 8.3 96 80-182 264-393 (507)
36 3pv8_A DNA polymerase I; DNA p 96.0 0.048 1.6E-06 58.6 12.4 130 9-182 30-182 (592)
37 2e6m_A Werner syndrome ATP-dep 95.9 0.12 4.3E-06 47.0 13.5 89 86-182 86-196 (208)
38 1yt3_A Ribonuclease D, RNAse D 95.7 0.26 8.8E-06 49.4 16.0 89 86-183 64-172 (375)
39 2hbj_A Exosome complex exonucl 95.7 0.14 4.9E-06 52.3 14.1 94 86-189 149-262 (410)
40 1vk0_A Hypothetical protein; h 95.7 0.16 5.6E-06 47.3 13.3 86 87-179 99-205 (206)
41 2py5_A DNA polymerase; protein 95.4 0.17 5.8E-06 54.1 14.0 125 6-179 4-182 (575)
42 3cym_A Uncharacterized protein 94.8 0.67 2.3E-05 47.8 16.1 90 85-185 84-191 (440)
43 3ikm_A DNA polymerase subunit 51.7 1.3 4.4E-05 50.7 -3.0 37 94-135 194-230 (1172)
44 1bgx_T TAQ DNA polymerase; DNA 48.2 32 0.0011 38.3 7.4 82 86-182 340-421 (832)
45 3d45_A Poly(A)-specific ribonu 27.2 98 0.0033 32.3 6.6 48 8-55 24-97 (507)
46 2a1r_A Poly(A)-specific ribonu 26.6 99 0.0034 31.5 6.5 48 8-55 22-95 (430)
No 1
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.1e-33 Score=259.99 Aligned_cols=170 Identities=26% Similarity=0.350 Sum_probs=149.6
Q ss_pred CCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHH
Q 013825 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFA 82 (436)
Q Consensus 3 ~~~~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~ 82 (436)
++..+.+||+||+||||+++ ..++|||||+|.++.+ +++++|+++|+|.. +|+++++++||||.++++++|++.
T Consensus 7 ~~l~~~~~v~iD~ETTGl~~--~~~~IieIg~v~~~~g--~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~ 80 (186)
T 2p1j_A 7 STFGDATFVVLDFETTGLDP--QVDEIIEIGAVKIQGG--QIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIE 80 (186)
T ss_dssp ------CEEEEEEEESCSCT--TTCCEEEEEEEEEETT--EEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHH
T ss_pred CcCcCCCEEEEEEECCCCCC--CCCeEEEEEEEEEECC--EEEEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCCCHH
Confidence 44677899999999999987 5789999999999876 66789999999998 799999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCC-CCCC
Q 013825 83 DIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTH 161 (436)
Q Consensus 83 eVl~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~-~~~H 161 (436)
+++.+|.+|+++.++||||+ .||+.||++++.++|++++.+ .++||+.+++..+ ..++++|.+|+++||++ ..+|
T Consensus 81 ~v~~~~~~~l~~~~lv~hn~-~fD~~~L~~~~~~~g~~~~~~-~~iDt~~l~~~~~--~~~~~~L~~l~~~~gi~~~~~H 156 (186)
T 2p1j_A 81 EVLPEFLGFLEDSIIVAHNA-NFDYRFLRLWIKKVMGLDWER-PYIDTLALAKSLL--KLRSYSLDSVVEKLGLGPFRHH 156 (186)
T ss_dssp HHHHHHHHHSSSCEEEETTH-HHHHHHHHHHHHHHHCCCCCC-CEEEHHHHHHHHT--CCSCCSHHHHHHHTTCCSTTCC
T ss_pred HHHHHHHHHHCCCEEEEECc-HHHHHHHHHHHHHcCCCCCCC-CEEeHHHHHHHHh--hcCCCCHHHHHHHcCCCCCCCc
Confidence 99999999999999999999 999999999999999987543 5999999988765 56789999999999998 5789
Q ss_pred ChHHHHHHHHHHHHHHHHHhh
Q 013825 162 RSLDDVRMNLEVLKYCATVLF 182 (436)
Q Consensus 162 rALdDAraTa~VLk~L~~~l~ 182 (436)
+|++||++|+++|.++.++..
T Consensus 157 ~Al~Da~~t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 157 RALDDARVTAQVFLRFVEMMK 177 (186)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999776533
No 2
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=1.4e-32 Score=254.05 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=152.7
Q ss_pred CCCCCCcEEEEEEecCCCCCC--CCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCC
Q 013825 3 PTQDRSEIAFFDVETTVPTRP--GQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPT 80 (436)
Q Consensus 3 ~~~~~~~fV~fDLETTGl~p~--g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~ 80 (436)
|...-..||+||+||||+++. ...++|||||||+++...++++++|++||+|.....|+++++++||||+++|+++|+
T Consensus 5 m~~~~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~ 84 (204)
T 1w0h_A 5 ADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADT 84 (204)
T ss_dssp CCCSSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBC
T ss_pred CCCCcCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCC
Confidence 444567899999999999751 135899999999998432467789999999997447999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCE-------EEEEccccchHH-HHHHHHHHcCCCCCCC-CceeeHHHHHHHHhcCCCCCCCHHHHH
Q 013825 81 FADIADTVFDILHGRI-------WAGHNILRFDCA-RIREAFAEIGRPAPEP-KGTIDSLALLTQRFGRRAGDMKMASLA 151 (436)
Q Consensus 81 f~eVl~~f~efL~g~v-------LVaHNa~~FD~~-fLr~a~~r~Gi~~p~~-~~~IDTl~Larr~l~~~~~~~kL~~LA 151 (436)
|.+++.+|.+|+++.+ +||||+ .||+. ||+++|.++|++.|.. ..++|++.++++.+....+.++|++++
T Consensus 85 ~~~v~~~~~~~l~~~~~~~~~~~lv~hn~-~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~ 163 (204)
T 1w0h_A 85 FPQVLKKVIDWMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML 163 (204)
T ss_dssp HHHHHHHHHHHHHHTTBTTTBCEEEEESS-TTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEEEC-cchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHH
Confidence 9999999999999765 999999 99997 9999999999987753 369999999887665433468999999
Q ss_pred HHhCCCC--CCCChHHHHHHHHHHHHHHHHHh
Q 013825 152 TYFGLGQ--QTHRSLDDVRMNLEVLKYCATVL 181 (436)
Q Consensus 152 ~~fGI~~--~~HrALdDAraTa~VLk~L~~~l 181 (436)
++||++. .+|||++||++|++||.+++++.
T Consensus 164 ~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 164 EKLGMDYDGRPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp HHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCccCcHHHHHHHHHHHHHHHHCC
Confidence 9999984 48999999999999999988753
No 3
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=3.9e-32 Score=257.38 Aligned_cols=179 Identities=18% Similarity=0.241 Sum_probs=151.3
Q ss_pred CCCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCc--------------ceEeeeEEEEEcCCCCCCCChhhHH
Q 013825 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKK--------------LEELHNYSTLVRPADPELISSLSVR 66 (436)
Q Consensus 1 ~~~~~~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~--------------levl~sfstLVrP~~~~~I~p~a~k 66 (436)
|..+....+||+||+||||+++ ..++|||||+|.++++. ++++++|+++|+|.. +|++++++
T Consensus 3 ~~~~~~~~~~v~iD~ETTGl~~--~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~ 78 (238)
T 1y97_A 3 MSEAPRAETFVFLDLEATGLPS--VEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASE 78 (238)
T ss_dssp CCSSCCCSEEEEEEEEESSCGG--GCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHH
T ss_pred CCCCCccCeEEEEEeeCCCcCC--CCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC--cCCHHHHH
Confidence 4556667889999999999976 56899999999998652 256789999999998 79999999
Q ss_pred hcCCCHHHH--hCCCCH-HHHHHHHHHHHcC----CEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhc
Q 013825 67 CNGITPDAV--VSSPTF-ADIADTVFDILHG----RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFG 139 (436)
Q Consensus 67 ltGIT~e~L--a~Ap~f-~eVl~~f~efL~g----~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~ 139 (436)
+||||.++| .++|+| +++++.|.+|+.+ .++||||+..||+.||+++|.++|++++....++||+.++++.+.
T Consensus 79 i~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~ 158 (238)
T 1y97_A 79 ITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDR 158 (238)
T ss_dssp HHCCCHHHHHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHH
T ss_pred HhCCCHHHHhhcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHh
Confidence 999999999 588999 5999999999986 799999977899999999999999988755569999999887652
Q ss_pred --------CCCCCCCHHHHHH-HhCCC-CCCCChHHHHHHHHHHHHHHHHHhhh
Q 013825 140 --------RRAGDMKMASLAT-YFGLG-QQTHRSLDDVRMNLEVLKYCATVLFL 183 (436)
Q Consensus 140 --------~~~~~~kL~~LA~-~fGI~-~~~HrALdDAraTa~VLk~L~~~l~l 183 (436)
+..++++|+++++ +||++ ..+|||++||++|+++|.++.++++.
T Consensus 159 ~~~p~~~~p~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 159 AHSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp HC----------CCSHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCccccCCCCCCCCHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999 69998 57999999999999999999887653
No 4
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.98 E-value=1.5e-31 Score=246.15 Aligned_cols=165 Identities=24% Similarity=0.365 Sum_probs=145.2
Q ss_pred CcEEEEEEecCCCCCC---CCCCcEEEEEEEEEeCCcceEe-eeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHH
Q 013825 8 SEIAFFDVETTVPTRP---GQRFAILEFGAILVCPKKLEEL-HNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFAD 83 (436)
Q Consensus 8 ~~fV~fDLETTGl~p~---g~~~~IIEIGAV~V~~~~levl-~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~e 83 (436)
.+||+||+||||+++. ...++|||||||.++++ .++ +.|+++|+|.. +|+++++++||||.++|+++|+|.+
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~--~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~ 84 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNR--RLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAE 84 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETT--EECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECC--eEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCCHHH
Confidence 6899999999999751 13589999999999976 444 47999999998 8999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCCC-C--CceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCCC--
Q 013825 84 IADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPE-P--KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ-- 158 (436)
Q Consensus 84 Vl~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~-~--~~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~~-- 158 (436)
++.+|.+|+++.++||||+ .||+.||+++|.++|+++|. . ..++||+.++++.+ +.. .++|.+|+++||++.
T Consensus 85 v~~~~~~~l~~~~lv~hn~-~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~-p~~-~~~L~~l~~~~gi~~~~ 161 (194)
T 2gui_A 85 VADEFMDYIRGAELVIHNA-AFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMF-PGK-RNSLDALCARYEIDNSK 161 (194)
T ss_dssp HHHHHHHHHTTSEEEETTH-HHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHS-TTS-CCSHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHCCCeEEEEch-HHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHc-CCC-CCCHHHHHHHcCcCCCC
Confidence 9999999999999999999 99999999999999998763 2 46999999987654 433 579999999999983
Q ss_pred -CCCChHHHHHHHHHHHHHHHH
Q 013825 159 -QTHRSLDDVRMNLEVLKYCAT 179 (436)
Q Consensus 159 -~~HrALdDAraTa~VLk~L~~ 179 (436)
.+|+|++||++|++||.++.+
T Consensus 162 ~~~H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 162 RTLHGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCChHHHHHHHHHHHHHHHh
Confidence 379999999999999998764
No 5
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.98 E-value=1.9e-32 Score=263.21 Aligned_cols=173 Identities=18% Similarity=0.242 Sum_probs=150.5
Q ss_pred CCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcc-----------------eEeeeEEEEEcCCCCCCCChhhHHhcC
Q 013825 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKL-----------------EELHNYSTLVRPADPELISSLSVRCNG 69 (436)
Q Consensus 7 ~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~l-----------------evl~sfstLVrP~~~~~I~p~a~kltG 69 (436)
-++||+||+||||+++ ..++|||||||+++++.+ .++++|+++|+|.. .|+++++++||
T Consensus 11 ~~~~vv~D~ETTGl~~--~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~--~i~~~~~~i~G 86 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPS--SRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (242)
T ss_dssp CSEEEEEEEEESSCGG--GCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS--CCCHHHHHHHC
T ss_pred cceEEEEEeecCCCCC--CCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCC--CCCHHHHHhcC
Confidence 4679999999999987 579999999999987632 45689999999998 79999999999
Q ss_pred CCHHHHhCC--CCHH-HHHHHHHHHHcC----CEEEEEccccchHHHHHHHHHHcCCCCC-CCCceeeHHHHHHHHhc--
Q 013825 70 ITPDAVVSS--PTFA-DIADTVFDILHG----RIWAGHNILRFDCARIREAFAEIGRPAP-EPKGTIDSLALLTQRFG-- 139 (436)
Q Consensus 70 IT~e~La~A--p~f~-eVl~~f~efL~g----~vLVaHNa~~FD~~fLr~a~~r~Gi~~p-~~~~~IDTl~Larr~l~-- 139 (436)
||.++|+++ |+|+ +++++|.+|+++ .++||||+..||+.||+++|.++|++++ .+..++||+.+++..+.
T Consensus 87 It~~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~ 166 (242)
T 3mxm_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 166 (242)
T ss_dssp CCHHHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHH
T ss_pred CCHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhc
Confidence 999999988 9996 999999999999 8999999449999999999999999875 33468999999875441
Q ss_pred -----CCCCCCCHHHHHHH-hCCC-CCCCChHHHHHHHHHHHHHHHHHhhh
Q 013825 140 -----RRAGDMKMASLATY-FGLG-QQTHRSLDDVRMNLEVLKYCATVLFL 183 (436)
Q Consensus 140 -----~~~~~~kL~~LA~~-fGI~-~~~HrALdDAraTa~VLk~L~~~l~l 183 (436)
+..++++|++|++. ||++ ..+|||++||++|++||.++.+.++.
T Consensus 167 ~p~~~~~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~ata~l~~~~~~~~~~ 217 (242)
T 3mxm_B 167 SPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDDLTLLSICQWKPQALLQ 217 (242)
T ss_dssp CC------CCCSHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHHHHHH
T ss_pred CccccCCCCCcCHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHHHHHHHH
Confidence 23679999999965 9999 57999999999999999998887654
No 6
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.97 E-value=2.6e-31 Score=250.60 Aligned_cols=173 Identities=21% Similarity=0.193 Sum_probs=148.7
Q ss_pred CCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEe---CCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHH-HHhCCCC
Q 013825 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVC---PKKLEELHNYSTLVRPADPELISSLSVRCNGITPD-AVVSSPT 80 (436)
Q Consensus 5 ~~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~---~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e-~La~Ap~ 80 (436)
..+..||+||+||||+++ ..++|||||+|+++ .+.+.+.++|++||+|.....|+++++++||||.+ +++++++
T Consensus 26 ~~~~~~vviD~ETTGl~~--~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~ 103 (224)
T 2f96_A 26 FRGYLPVVVDVETGGFNS--ATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQ 103 (224)
T ss_dssp TTTEEEEEEEEEESSSCT--TTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBC
T ss_pred ccCCcEEEEEeeCCCCCC--CCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCC
Confidence 456789999999999987 56899999999998 55444578999999995323799999999999997 5899999
Q ss_pred HHHHHHHHHHHHc---------CCEEEEEccccchHHHHHHHHHHcCCCC-CC-CCceeeHHHHHHHHhcCCCCCCCHHH
Q 013825 81 FADIADTVFDILH---------GRIWAGHNILRFDCARIREAFAEIGRPA-PE-PKGTIDSLALLTQRFGRRAGDMKMAS 149 (436)
Q Consensus 81 f~eVl~~f~efL~---------g~vLVaHNa~~FD~~fLr~a~~r~Gi~~-p~-~~~~IDTl~Larr~l~~~~~~~kL~~ 149 (436)
+.+++.+|.+|+. +.++||||+ .||+.||+++|.++|++. |+ ...++||+.++++.+ ++++|..
T Consensus 104 ~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~-~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~----~~~~L~~ 178 (224)
T 2f96_A 104 EEAALTEIFRGIRKALKANGCKRAILVGHNS-SFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY----GQTVLAK 178 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEEETTH-HHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH----SCCSHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCEEEEeCh-hhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHc----CCCCHHH
Confidence 9999999999985 689999999 999999999999999874 33 246899999988765 3469999
Q ss_pred HHHHhCCC--C-CCCChHHHHHHHHHHHHHHHHHhhhh
Q 013825 150 LATYFGLG--Q-QTHRSLDDVRMNLEVLKYCATVLFLE 184 (436)
Q Consensus 150 LA~~fGI~--~-~~HrALdDAraTa~VLk~L~~~l~le 184 (436)
|+++||++ . .+|||++||++|++||.++++++...
T Consensus 179 l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~ 216 (224)
T 2f96_A 179 ACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKEM 216 (224)
T ss_dssp HHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998 2 68999999999999999999876543
No 7
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=256.82 Aligned_cols=174 Identities=19% Similarity=0.202 Sum_probs=151.2
Q ss_pred CCcEEEEEEecCCCCC--CCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHH
Q 013825 7 RSEIAFFDVETTVPTR--PGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADI 84 (436)
Q Consensus 7 ~~~fV~fDLETTGl~p--~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eV 84 (436)
...||+||+||||+++ ....++|||||||.++.+.++++++|++||+|.....|+++++++||||++||+++|+|.+|
T Consensus 77 ~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~ev 156 (299)
T 1zbh_A 77 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 156 (299)
T ss_dssp CSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred CceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHH
Confidence 4679999999999963 12578999999999997656788999999999974479999999999999999999999999
Q ss_pred HHHHHHHHcCC-------EEEEEccccchHH-HHHHHHHHcCCCCCCC-CceeeHHHHHHHHhcCCCCCCCHHHHHHHhC
Q 013825 85 ADTVFDILHGR-------IWAGHNILRFDCA-RIREAFAEIGRPAPEP-KGTIDSLALLTQRFGRRAGDMKMASLATYFG 155 (436)
Q Consensus 85 l~~f~efL~g~-------vLVaHNa~~FD~~-fLr~a~~r~Gi~~p~~-~~~IDTl~Larr~l~~~~~~~kL~~LA~~fG 155 (436)
+.+|.+|+++. ++||||+ .||+. ||+++|.++|++.|.. ..++|++.+++..++...+.++|.+++++||
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~-~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeC-HHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHHcC
Confidence 99999999875 9999999 99999 9999999999987732 4699999888765542223489999999999
Q ss_pred CCC--CCCChHHHHHHHHHHHHHHHHHh
Q 013825 156 LGQ--QTHRSLDDVRMNLEVLKYCATVL 181 (436)
Q Consensus 156 I~~--~~HrALdDAraTa~VLk~L~~~l 181 (436)
++. .+|+|++||++|++||.+++++.
T Consensus 236 i~~~g~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 236 MDYDGRPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 984 47999999999999999988764
No 8
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.97 E-value=2.5e-31 Score=265.56 Aligned_cols=172 Identities=19% Similarity=0.246 Sum_probs=150.3
Q ss_pred CCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcc-----------------eEeeeEEEEEcCCCCCCCChhhHHhcC
Q 013825 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKL-----------------EELHNYSTLVRPADPELISSLSVRCNG 69 (436)
Q Consensus 7 ~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~l-----------------evl~sfstLVrP~~~~~I~p~a~kltG 69 (436)
-++|||||+||||+++ ..++|||||+|+++.+.+ .++++|+++|+|.. .|+++++++||
T Consensus 11 ~~tfVv~DlETTGL~~--~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~--~I~~~a~~IhG 86 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPS--SRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (314)
T ss_dssp CSEEEEEEEEESSCGG--GCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS--CCCHHHHHHHS
T ss_pred cCCEEEEEEECCCCCC--CCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCC--CCCHHHHHhcC
Confidence 4679999999999987 579999999999987642 25689999999998 79999999999
Q ss_pred CCHHHHhCC--CCH-HHHHHHHHHHHcC----CEEEEEc-cccchHHHHHHHHHHcCCCCCC-CCceeeHHHHHHHHhc-
Q 013825 70 ITPDAVVSS--PTF-ADIADTVFDILHG----RIWAGHN-ILRFDCARIREAFAEIGRPAPE-PKGTIDSLALLTQRFG- 139 (436)
Q Consensus 70 IT~e~La~A--p~f-~eVl~~f~efL~g----~vLVaHN-a~~FD~~fLr~a~~r~Gi~~p~-~~~~IDTl~Larr~l~- 139 (436)
||.+||+++ |+| ++++++|.+|+++ .++|||| + .||+.||+++|.++|++++. ...++|++.+++....
T Consensus 87 IT~e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga-~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~ 165 (314)
T 3u3y_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGD-RYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQA 165 (314)
T ss_dssp CCHHHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTT-TTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTT
T ss_pred CCHHHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcH-HHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHH
Confidence 999999998 899 7999999999998 8999999 7 99999999999999998753 3458999987663221
Q ss_pred --CC----CCCCCHHHHHHH-hCCC-CCCCChHHHHHHHHHHHHHHHHHhhh
Q 013825 140 --RR----AGDMKMASLATY-FGLG-QQTHRSLDDVRMNLEVLKYCATVLFL 183 (436)
Q Consensus 140 --~~----~~~~kL~~LA~~-fGI~-~~~HrALdDAraTa~VLk~L~~~l~l 183 (436)
+. .++++|++|+++ ||++ ..+|||++||++|++||.++.++++.
T Consensus 166 ~~P~~~~~~~~~~L~~L~~~l~gi~~~~aHrAl~DA~ata~lf~~l~~~~l~ 217 (314)
T 3u3y_B 166 SSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGHVLTLLSICQWKPQALLQ 217 (314)
T ss_dssp C-------CCCCSHHHHHHHHHSSCCSCSSSHHHHHHHHHHHHHSSHHHHHH
T ss_pred hCccccccCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11 478999999998 9999 58999999999999999999988754
No 9
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=246.25 Aligned_cols=172 Identities=15% Similarity=0.185 Sum_probs=145.5
Q ss_pred CcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHHHHH
Q 013825 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87 (436)
Q Consensus 8 ~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eVl~~ 87 (436)
..||+||+||||+++....++|||||||+++++.++++++|++||+|.....|+++++++||||++||+++|+|.+|+++
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~~ 110 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 110 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHHH
Confidence 46999999999998732225999999999998866788999999999974479999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEccc-------cchHHH-HHHHHHHcCCCCCCC-CceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCCC
Q 013825 88 VFDILHGRIWAGHNIL-------RFDCAR-IREAFAEIGRPAPEP-KGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQ 158 (436)
Q Consensus 88 f~efL~g~vLVaHNa~-------~FD~~f-Lr~a~~r~Gi~~p~~-~~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~~ 158 (436)
|.+|+++.++||||+. .||+.| |+++|.++|+++|.. ..++|+...++... ...++++|..|+++||++.
T Consensus 111 f~~~l~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~-~~~p~~~L~~l~~~~gi~~ 189 (224)
T 2xri_A 111 VDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAM-GCWPKNGLLDMNKGLSLQH 189 (224)
T ss_dssp HHHHHHHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHH-TSCCTTTHHHHHHHTTCCC
T ss_pred HHHHHhhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHh-ccCCCCCHHHHHHHcCCCC
Confidence 9999999999999974 899997 889999999988743 46999554433221 2335689999999999984
Q ss_pred --CCCChHHHHHHHHHHHHHHHHH
Q 013825 159 --QTHRSLDDVRMNLEVLKYCATV 180 (436)
Q Consensus 159 --~~HrALdDAraTa~VLk~L~~~ 180 (436)
.+|||++||++|++||.+++++
T Consensus 190 ~~~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 190 IGRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp CSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcChHHHHHHHHHHHHHHHHc
Confidence 5799999999999999998864
No 10
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.97 E-value=2.9e-29 Score=237.88 Aligned_cols=172 Identities=20% Similarity=0.169 Sum_probs=149.9
Q ss_pred CCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEe---CCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHH-HHhCCCC
Q 013825 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVC---PKKLEELHNYSTLVRPADPELISSLSVRCNGITPD-AVVSSPT 80 (436)
Q Consensus 5 ~~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~---~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e-~La~Ap~ 80 (436)
.....||+||+||||+++ ..++|||||+|.++ ++.+.+.++|+.+|+|.....|+++++++||||.+ +++++++
T Consensus 34 l~~~~~vviD~ETTGl~~--~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~ 111 (235)
T 3v9w_A 34 FRGFYPVVIDVETAGFNA--KTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVS 111 (235)
T ss_dssp TTTEEEEEEEEEESSSCT--TTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBC
T ss_pred ccCCcEEEEEEeCCCCCC--CCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCC
Confidence 345689999999999987 57899999999997 66544678999999996434899999999999999 9999999
Q ss_pred HHHHHHHHHHHH---------cCCEEEEEccccchHHHHHHHHHHcCCCC-CC-CCceeeHHHHHHHHhcCCCCCCCHHH
Q 013825 81 FADIADTVFDIL---------HGRIWAGHNILRFDCARIREAFAEIGRPA-PE-PKGTIDSLALLTQRFGRRAGDMKMAS 149 (436)
Q Consensus 81 f~eVl~~f~efL---------~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~-p~-~~~~IDTl~Larr~l~~~~~~~kL~~ 149 (436)
+.+++.+|.+|+ .+.++||||+ .||+.||+++|.++|++. |+ ...++||+.+++..+. +++|..
T Consensus 112 ~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~-~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p----~~~L~~ 186 (235)
T 3v9w_A 112 GYEALHEIFKVVRKGIKASGCNRAIMVAHNA-NFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG----QTVLSK 186 (235)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCEEEEEETTT-HHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS----CCSHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcEEEEeCh-HHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC----CCCHHH
Confidence 999999999999 4689999999 999999999999999965 22 1358999999886652 479999
Q ss_pred HHHHhCCCC---CCCChHHHHHHHHHHHHHHHHHhhh
Q 013825 150 LATYFGLGQ---QTHRSLDDVRMNLEVLKYCATVLFL 183 (436)
Q Consensus 150 LA~~fGI~~---~~HrALdDAraTa~VLk~L~~~l~l 183 (436)
|+++||++. .+|+|++||++|++||.++++++..
T Consensus 187 l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 187 ACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp HHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence 999999983 5899999999999999999998763
No 11
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.97 E-value=9.7e-30 Score=257.21 Aligned_cols=174 Identities=20% Similarity=0.219 Sum_probs=151.0
Q ss_pred CCcEEEEEEecCCCCC--CCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHH
Q 013825 7 RSEIAFFDVETTVPTR--PGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADI 84 (436)
Q Consensus 7 ~~~fV~fDLETTGl~p--~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eV 84 (436)
...||+||+||||+++ ....++|||||||.++.+.++++++|++||+|.....|+++++++||||++||+++|+|.+|
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eV 206 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 206 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 3689999999999952 12568999999999997656888999999999974479999999999999999999999999
Q ss_pred HHHHHHHHcCC-------EEEEEccccchHH-HHHHHHHHcCCCCCC-CCceeeHHHHHHHHhcCCCCCCCHHHHHHHhC
Q 013825 85 ADTVFDILHGR-------IWAGHNILRFDCA-RIREAFAEIGRPAPE-PKGTIDSLALLTQRFGRRAGDMKMASLATYFG 155 (436)
Q Consensus 85 l~~f~efL~g~-------vLVaHNa~~FD~~-fLr~a~~r~Gi~~p~-~~~~IDTl~Larr~l~~~~~~~kL~~LA~~fG 155 (436)
+.+|.+|+.+. ++||||+ .||+. ||+++|.++|++.|. ...++|++.+++..++...+.++|..|+++||
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa-~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g 285 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG 285 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTT
T ss_pred HHHHHHHHhcccccCCCcEEEEECc-HhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcC
Confidence 99999999874 9999999 99999 999999999998773 34699999988765542223489999999999
Q ss_pred CCC--CCCChHHHHHHHHHHHHHHHHHh
Q 013825 156 LGQ--QTHRSLDDVRMNLEVLKYCATVL 181 (436)
Q Consensus 156 I~~--~~HrALdDAraTa~VLk~L~~~l 181 (436)
++. .+|||++||++|++||.+++++.
T Consensus 286 i~~~g~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 286 MDYDGRPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 984 47999999999999999988764
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.96 E-value=2.2e-29 Score=250.13 Aligned_cols=171 Identities=15% Similarity=0.205 Sum_probs=145.3
Q ss_pred CcEEEEEEecCCCCCCCCCC---cEEEEEEEEEeCCcceEee--eEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHH
Q 013825 8 SEIAFFDVETTVPTRPGQRF---AILEFGAILVCPKKLEELH--NYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFA 82 (436)
Q Consensus 8 ~~fV~fDLETTGl~p~g~~~---~IIEIGAV~V~~~~levl~--sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~ 82 (436)
.+||+||+||||+++ ..+ +|||||||+++...+++++ +|++||+|.....|+++++++||||++||+++|+|.
T Consensus 19 ~~~vviD~ETTGl~~--~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~~ 96 (308)
T 3cg7_A 19 DTLLILDFETTSDAA--NQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFD 96 (308)
T ss_dssp SEEEEEEEEECCBTT--BCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHH
T ss_pred CeEEEEEeecCCCCC--CCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCHH
Confidence 579999999999986 334 9999999999753346667 899999999832499999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEcc-----ccchH-HHHHHHHHHcCCCCCCC-CceeeHHHHHHHHhcCC-----CCCCCHHHH
Q 013825 83 DIADTVFDILHGRIWAGHNI-----LRFDC-ARIREAFAEIGRPAPEP-KGTIDSLALLTQRFGRR-----AGDMKMASL 150 (436)
Q Consensus 83 eVl~~f~efL~g~vLVaHNa-----~~FD~-~fLr~a~~r~Gi~~p~~-~~~IDTl~Larr~l~~~-----~~~~kL~~L 150 (436)
+|+.+|.+|+++.++||||+ +.||+ .||+++|.++|++.|.. ..++||+.++++.+... .++++|.++
T Consensus 97 evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l 176 (308)
T 3cg7_A 97 VVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKM 176 (308)
T ss_dssp HHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHH
T ss_pred HHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHH
Confidence 99999999999776666665 38999 79999999999988743 46899999988766431 236899999
Q ss_pred HHHhCCCC--CCCChHHHHHHHHHHHHHHHHH
Q 013825 151 ATYFGLGQ--QTHRSLDDVRMNLEVLKYCATV 180 (436)
Q Consensus 151 A~~fGI~~--~~HrALdDAraTa~VLk~L~~~ 180 (436)
+++||++. .+|||++||++|++||.+++++
T Consensus 177 ~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 177 NEYYDLPTIGRAHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp HHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 99999983 3599999999999999998765
No 13
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.96 E-value=8e-29 Score=225.36 Aligned_cols=160 Identities=19% Similarity=0.266 Sum_probs=130.9
Q ss_pred CCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEee-eEEEEEcCCCC--CCCChhhHH---hcCCCHHHHhCCC
Q 013825 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELH-NYSTLVRPADP--ELISSLSVR---CNGITPDAVVSSP 79 (436)
Q Consensus 6 ~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~-sfstLVrP~~~--~~I~p~a~k---ltGIT~e~La~Ap 79 (436)
++.+||+||+||||+++ ..++|||||+|++++++ .+++ .|+++|+|..+ ..+++++++ +||||++|++++|
T Consensus 3 ~~~~~v~iD~ETTGl~~--~~~~IieIg~v~~~~~~-~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~ 79 (180)
T 2igi_A 3 NENNLIWIDLEMTGLDP--ERDRIIEIATLVTDANL-NILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTM 79 (180)
T ss_dssp GGGCEEEEEEEESSSCT--TTCCEEEEEEEEECTTC-CEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCC
T ss_pred CCCcEEEEEeeCCCCCC--CCCceEEEEEEEEcCCC-cEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCC
Confidence 45689999999999987 56899999999988653 4445 49999999861 235677754 5899999999999
Q ss_pred CHHHHHHHHHHHHcC------CEEEEEccccchHHHHHHHHHHcCCCCCCCCceee--HHH-HHHHHhcCCCCCCCHHHH
Q 013825 80 TFADIADTVFDILHG------RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID--SLA-LLTQRFGRRAGDMKMASL 150 (436)
Q Consensus 80 ~f~eVl~~f~efL~g------~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~ID--Tl~-Larr~l~~~~~~~kL~~L 150 (436)
++++++++|.+|+++ .++||||+ .||+.||++++.+++..+. .+++| |+. ++++ +.+..
T Consensus 80 ~~~~v~~~~~~~l~~~~~~~~~~lv~hn~-~fD~~fL~~~~~~~~~~~~--~~~~d~~tl~~l~~~-~~p~~-------- 147 (180)
T 2igi_A 80 GDREAELATLEFLKQWVPAGKSPICGNSI-GQDRRFLFKYMPELEAYFH--YRYLDVSTLKELARR-WKPEI-------- 147 (180)
T ss_dssp CHHHHHHHHHHHHTTTSCTTTSCEEESSH-HHHHHHHHHHCHHHHHHSC--SCEEETHHHHHHHHH-HCGGG--------
T ss_pred CHHHHHHHHHHHHHHhCCCCCceEEecCH-HHHHHHHHHHHHHhccCCC--cceeeHHHHHHHHHH-hChHh--------
Confidence 999999999999996 69999999 9999999999998874433 35899 874 6664 44432
Q ss_pred HHHhCCC-CCCCChHHHHHHHHHHHHHHHHHhh
Q 013825 151 ATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLF 182 (436)
Q Consensus 151 A~~fGI~-~~~HrALdDAraTa~VLk~L~~~l~ 182 (436)
..|++ ..+|||++||++|+++|+++.++++
T Consensus 148 --~~~i~~~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 148 --LDGFTKQGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp --GGGSCCCCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred --hhCCCCcCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 13666 4799999999999999999998876
No 14
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.95 E-value=1.4e-28 Score=228.92 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=131.0
Q ss_pred CCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeee-EEEEEc-CCC-CCCCChhh---HHhcCCCHHHHh
Q 013825 3 PTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHN-YSTLVR-PAD-PELISSLS---VRCNGITPDAVV 76 (436)
Q Consensus 3 ~~~~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~s-fstLVr-P~~-~~~I~p~a---~kltGIT~e~La 76 (436)
|..++.+||+||+||||+++ ..++|||||||.++++ +.++++ ++.+|+ |.. ...+++++ ..+||||++|++
T Consensus 4 ~~~~~~~~v~~D~ETTGL~p--~~d~IiEIgaV~~d~~-~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~ 80 (186)
T 3tr8_A 4 MDFSDDNLIWLDLEMTGLDP--ERDRIIEIATIVTNSH-LDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKN 80 (186)
T ss_dssp CCCCTTCEEEEEEEESSSCT--TTCCEEEEEEEEECTT-CCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHT
T ss_pred CcCCCCcEEEEEEECCCCCC--CCCceEEEEEEEEcCC-eEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHh
Confidence 56678899999999999998 6899999999955543 455555 455685 552 01345554 446699999999
Q ss_pred CCCCHHHHHHHHHHHH------cCCEEEEEccccchHHHHHHHHHHcCCCCCCCCceee--HHH-HHHHHhcCCCCCCCH
Q 013825 77 SSPTFADIADTVFDIL------HGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTID--SLA-LLTQRFGRRAGDMKM 147 (436)
Q Consensus 77 ~Ap~f~eVl~~f~efL------~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~ID--Tl~-Larr~l~~~~~~~kL 147 (436)
++|++++++++|++|+ +++++||||+ .||+.||++++.++|..+. .+++| |++ |+|+.+ +...
T Consensus 81 ~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~-~FD~~FL~~~~~~~~~~~~--~~~iDvsTl~elar~~~-P~~~---- 152 (186)
T 3tr8_A 81 SSVDEVEAETLTLAFLEKYVSAGKSPLCGNSV-CQDRRFLSRYMPRLNQFFH--YRHLDVTTLKILAQRWA-PQIA---- 152 (186)
T ss_dssp CCCCHHHHHHHHHHHHTTTSCTTCSCEEESST-HHHHHHHHHHCHHHHHHSC--SCEEEHHHHHHHHHHHC-HHHH----
T ss_pred cCCCHHHHHHHHHHHHHHhccCCCcEEEEEcH-HHhHHHHHHHHHHcCCCCC--CcEEeHHHHHHHHHHHC-cccc----
Confidence 9999999999999999 7889999999 9999999999999886433 45899 887 877544 4221
Q ss_pred HHHHHHhCCC-CCCCChHHHHHHHHHHHHHHHHHhhh
Q 013825 148 ASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATVLFL 183 (436)
Q Consensus 148 ~~LA~~fGI~-~~~HrALdDAraTa~VLk~L~~~l~l 183 (436)
-|++ ..+|||++||++++++|++..+.++.
T Consensus 153 ------~~~~~~~~HrAl~Da~ati~~l~~y~~~~~~ 183 (186)
T 3tr8_A 153 ------AAHIKESQHLALQDIRDSIEELRYYRAHLLN 183 (186)
T ss_dssp ------TTSCCCCCSCHHHHHHHHHHHHHHHHHHTBC
T ss_pred ------ccCCCCCCcChHHHHHHHHHHHHHHHHHhhc
Confidence 1666 57999999999999999999888763
No 15
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.95 E-value=1.3e-27 Score=250.74 Aligned_cols=174 Identities=20% Similarity=0.206 Sum_probs=143.2
Q ss_pred CCCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeee-EEEEEcCCCCCCC--ChhhHHhcCCCHHHHhC
Q 013825 1 MGPTQDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHN-YSTLVRPADPELI--SSLSVRCNGITPDAVVS 77 (436)
Q Consensus 1 ~~~~~~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~s-fstLVrP~~~~~I--~p~a~kltGIT~e~La~ 77 (436)
|.....+.+||+||+||||+++ ..++|||||+|+++.++ .++++ |++||+|.. .+ ++.+.++||||.++|.+
T Consensus 2 m~~~~~~~~~vv~DlETTGl~p--~~d~IIEIgaV~vd~~g-~ii~~~f~~lVkP~~--~ilp~p~a~~IhGIT~e~l~~ 76 (482)
T 2qxf_A 2 MNDGKQQSTFLFHDYETFGTHP--ALDRPAQFAAIRTDSEF-NVIGEPEVFYCKPAD--DYLPQPGAVLITGITPQEARA 76 (482)
T ss_dssp -----CCCEEEEEEEEESSSCT--TTSCEEEEEEEEECTTS-CBCSCCEEEEBCCCT--TCCCCHHHHHHHCCCHHHHHH
T ss_pred ccccCCCCCEEEEEEECCCCCC--CCCeEEEEEEEEEECCC-eEEeeeeEEEECCCC--CCCCCHHHHHHhCCCHHHHhc
Confidence 3333567889999999999987 56899999999998543 45566 999999998 45 68999999999999998
Q ss_pred CCCH-HHHHHHHHHHHc--CCEEEEEc-cccchHHHHHHHHHHcCCCCCC--C---CceeeHHHHHHHHhc--------C
Q 013825 78 SPTF-ADIADTVFDILH--GRIWAGHN-ILRFDCARIREAFAEIGRPAPE--P---KGTIDSLALLTQRFG--------R 140 (436)
Q Consensus 78 Ap~f-~eVl~~f~efL~--g~vLVaHN-a~~FD~~fLr~a~~r~Gi~~p~--~---~~~IDTl~Larr~l~--------~ 140 (436)
++.+ .+++.+|.+|++ +.++|||| + +||..||+++|.++|+++.. + ..++||+.+++..+. +
T Consensus 77 ap~~~~evl~~f~~~l~~~~~~lVaHNs~-~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP 155 (482)
T 2qxf_A 77 KGENEAAFAARIHSLFTVPKTCILGYNNV-RFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWP 155 (482)
T ss_dssp HCBCHHHHHHHHHHHHTSTTEEEEESSTT-TTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCC
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEECCH-HHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCc
Confidence 6655 999999999999 89999999 7 99999999999999887432 1 457999999886552 1
Q ss_pred ----CCCCCCHHHHHHHhCCC-CCCCChHHHHHHHHHHHHHHHHH
Q 013825 141 ----RAGDMKMASLATYFGLG-QQTHRSLDDVRMNLEVLKYCATV 180 (436)
Q Consensus 141 ----~~~~~kL~~LA~~fGI~-~~~HrALdDAraTa~VLk~L~~~ 180 (436)
..++++|+.|+++||++ ..+|+|++||++|++||+++.++
T Consensus 156 ~~~~~~~s~kL~~L~~~~Gi~~~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 156 ENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp BCTTSSBCCCHHHHHHHTTCCCC---CTTHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34588999999999998 57899999999999999998765
No 16
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.3e-28 Score=223.56 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=127.7
Q ss_pred CCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCC--CCCChhhHHh---cCCCHHHHhCCCC
Q 013825 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADP--ELISSLSVRC---NGITPDAVVSSPT 80 (436)
Q Consensus 6 ~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~--~~I~p~a~kl---tGIT~e~La~Ap~ 80 (436)
.+.+||+||+||||+++ ..++|||||||+.+++...+.+.|+++|+|... ..+++++.++ ||||.++++++|+
T Consensus 7 ~~~~~vviD~ETTGl~p--~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~ 84 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDT--DRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVT 84 (194)
T ss_dssp -CCEEEEEEEEESCSCT--TTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCC
T ss_pred CCCCEEEEEeECCCCCC--CCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCC
Confidence 55789999999999987 678999999999665421344579999999861 1235555555 9999999999999
Q ss_pred HHHHHHHHHHHHcCCE------EEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHH--HHHhcCCCCCCCHHHHHH
Q 013825 81 FADIADTVFDILHGRI------WAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALL--TQRFGRRAGDMKMASLAT 152 (436)
Q Consensus 81 f~eVl~~f~efL~g~v------LVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~La--rr~l~~~~~~~kL~~LA~ 152 (436)
+++++++|.+|+++++ +||||+ .||+.||++++.+++..+. .+.+|+..+. .+.+.+. +++
T Consensus 85 ~~ev~~~~~~~l~~~~~~~~~~lvghn~-~FD~~fL~~~~~~~~~~~~--~~~~d~~~l~~l~~~~~p~--------~~~ 153 (194)
T 2gbz_A 85 HAQAEAQTVAFLGEWIRAGASPMCGNSI-CQDRRFLHRQMSRLERYFH--YRNLDVSTIKELARRWAPA--------VAS 153 (194)
T ss_dssp HHHHHHHHHHHHTTTCCTTSSCEEESSH-HHHHHHHHHHCHHHHHHSC--SCEEEHHHHHHHHHHHCGG--------GGT
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCH-HHhHHHHHHHHHHhcccCC--CccccHHHHHHHHHHhCHH--------HHh
Confidence 9999999999999988 999999 9999999999998874332 3578977542 2234432 222
Q ss_pred HhCCC-CCCCChHHHHHHHHHHHHHHHHHhh
Q 013825 153 YFGLG-QQTHRSLDDVRMNLEVLKYCATVLF 182 (436)
Q Consensus 153 ~fGI~-~~~HrALdDAraTa~VLk~L~~~l~ 182 (436)
+++ ..+|||++||++|+++|+++.++++
T Consensus 154 --~i~~~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 154 --GFAKSSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp --TCCCCSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred --CCCCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 355 4789999999999999999998776
No 17
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=2.5e-28 Score=225.07 Aligned_cols=160 Identities=19% Similarity=0.312 Sum_probs=128.2
Q ss_pred CCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHHH
Q 013825 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIA 85 (436)
Q Consensus 6 ~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eVl 85 (436)
+..+||+||+||||+++. ...+|+|||+|..+ + .++ |++||+|.. +|+++++++||||+++|+++|+|.+++
T Consensus 3 ~~~~~vviD~ETTGl~~~-~~~~iiei~~v~~~-g--~~i--~~~lV~P~~--~i~~~~~~i~GIt~~~l~~a~~~~~v~ 74 (189)
T 1wlj_A 3 GSREVVAMDCEMVGLGPH-RESGLARCSLVNVH-G--AVL--YDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVAR 74 (189)
T ss_dssp ---CEEEEEEEEEEETTT-TEEEEEEEEEECTT-C--CEE--EEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHH
T ss_pred CCCeEEEEEeECcCcCCC-CCceEEEEEEEeCC-C--CEE--EeeEecCCC--CCCccccCCCCCCHHHHcCCCCHHHHH
Confidence 356899999999999862 12578899997642 2 343 899999998 799999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHH--HH-hcCCCCCCCHHHHHHH-hCCC-CC-
Q 013825 86 DTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLT--QR-FGRRAGDMKMASLATY-FGLG-QQ- 159 (436)
Q Consensus 86 ~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Lar--r~-l~~~~~~~kL~~LA~~-fGI~-~~- 159 (436)
.+|.+|+++.++||||+ .||+.||+.++ |. ..++||+.++. +. ..+..++++|..|+++ ||++ ..
T Consensus 75 ~~~~~~l~~~~lV~hn~-~fD~~~L~~~~-------~~-~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~ 145 (189)
T 1wlj_A 75 LEILQLLKGKLVVGHDL-KHDFQALKEDM-------SG-YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNS 145 (189)
T ss_dssp HHHHHHHTTSEEEESSH-HHHHHHTTCCC-------TT-CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCC
T ss_pred HHHHHHHCCCEEEECCc-HHHHHHHHHhC-------CC-CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCC
Confidence 99999999999999999 99999997642 22 35899988642 21 2234578999999998 7998 33
Q ss_pred --CCChHHHHHHHHHHHHHHHHHhh
Q 013825 160 --THRSLDDVRMNLEVLKYCATVLF 182 (436)
Q Consensus 160 --~HrALdDAraTa~VLk~L~~~l~ 182 (436)
+|||++||++|+++|.++.+.+.
T Consensus 146 ~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 146 LLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887754
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=99.07 E-value=5.7e-10 Score=104.26 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=96.0
Q ss_pred EEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHH--hcCCCHHHHhCCCCHHHHHHH
Q 013825 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVR--CNGITPDAVVSSPTFADIADT 87 (436)
Q Consensus 10 fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~k--ltGIT~e~La~Ap~f~eVl~~ 87 (436)
-+|+|+|+|+.. ...++|+||+|.-+ | .+|+..+..-++..+++++.+ +.++...-.....+++++..+
T Consensus 24 r~FlDTEFt~d~---~~~eLISIGlV~Ed-G-----rEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~~~ 94 (190)
T 4hec_A 24 RYFYDTEFIEDG---HTIELISIGVVAED-G-----REYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLD 94 (190)
T ss_dssp EEEEEEEEEECS---SCEEEEEEEEEETT-S-----CEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHHHH
T ss_pred EEEEeeeecCCC---CCCCEEEEEEEcCC-C-----CEEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHHHH
Confidence 689999999854 36789999998632 2 357766654333356777766 456654444445689999999
Q ss_pred HHHHHcCC-----EEEEEccccchHHHHHHHHHHc-CCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCC---C
Q 013825 88 VFDILHGR-----IWAGHNILRFDCARIREAFAEI-GRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG---Q 158 (436)
Q Consensus 88 f~efL~g~-----vLVaHNa~~FD~~fLr~a~~r~-Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~---~ 158 (436)
|.+|+... .+++|++ .||..+|.+.+... .++...+....|...+... .+ ...++ .
T Consensus 95 L~~FL~~~~~~~~eLwa~~~-~yD~~~L~ql~g~m~~lP~~~p~~~~dlr~~~~~-~g-------------~~~lp~~~~ 159 (190)
T 4hec_A 95 LEEFLRIDGTDSIELWAWVG-AYDHVALCQLWGPMTALPPTVPRFTRELRQLWED-RG-------------CPRMPPRPR 159 (190)
T ss_dssp HHHHTTTTSSCEEEEEESSC-HHHHHHHHTTTSSGGGSCTTSCSSCEEHHHHHHH-TT-------------CCCCCC---
T ss_pred HHHHHHhcCCCCCEEEEecc-cccHHHHHHHhcccccCCcccchhhHHHHHHHHH-cC-------------CCCCCCCCC
Confidence 99999732 5788888 99999998876432 2333333334565444321 11 11222 3
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q 013825 159 QTHRSLDDVRMNLEVLKYCAT 179 (436)
Q Consensus 159 ~~HrALdDAraTa~VLk~L~~ 179 (436)
.+|+||.||++++..++.|..
T Consensus 160 ~~H~AL~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 160 DVHDALVDARDQLRRFRLITS 180 (190)
T ss_dssp --CCHHHHHHHHHHHHHHHHC
T ss_pred CCcCcHHHHHHHHHHHHHHhC
Confidence 579999999999999988653
No 19
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.98 E-value=8.1e-09 Score=110.86 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=106.8
Q ss_pred CcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHHHHH
Q 013825 8 SEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADT 87 (436)
Q Consensus 8 ~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eVl~~ 87 (436)
..+++||+||||+++ ..++|++||++. .++ + ..||.+.. . +++ +.+++++.++++.
T Consensus 26 ~~~va~DtEttgl~~--~~~~iv~I~~~~-~~g--~-----~~yip~~~--~---------~~~---~~~~l~~~~vl~~ 81 (605)
T 2kfn_A 26 APVFAFDTETDSLDN--ISANLVGLSFAI-EPG--V-----AAYIPVAH--D---------YLD---APDQISRERALEL 81 (605)
T ss_dssp SSSEEEEEEESCSCT--TTCCEEEEEEEE-ETT--E-----EEEEECCC--C---------STT---CCCCCCHHHHHHH
T ss_pred CCeEEEEEecCCCCc--ccCceEEEEEEE-cCC--c-----EEEEeccc--c---------ccc---cccccCHHHHHHH
Confidence 367999999999986 568999999884 444 1 12553222 1 111 1345678999999
Q ss_pred HHHHHcCC--EEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHh-CCCC------
Q 013825 88 VFDILHGR--IWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLGQ------ 158 (436)
Q Consensus 88 f~efL~g~--vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~f-GI~~------ 158 (436)
|.+|+.+. .+|+||+ .||+.+|++ +|+..+. .++||+-++ ..+.+...+++|+.|++.| |+..
T Consensus 82 L~~~L~d~~i~kV~hna-k~D~~~L~~----~Gi~l~~--~~~DT~laa-yLL~p~~~~~~L~~La~~~Lg~~~i~~~~~ 153 (605)
T 2kfn_A 82 LKPLLEDEKALKVGQNL-KYDRGILAN----YGIELRG--IAFDTMLES-YILNSVAGRHDMDSLAERWLKHKTITFEEI 153 (605)
T ss_dssp HHHHHTCTTSCEEESSH-HHHHHHHHT----TTCCCCC--EEEEHHHHH-HHHCTTSSCCSHHHHHHHHSCCCCCCHHHH
T ss_pred HHHHHcCCCCeEEEECc-HHHHHHHHH----CCCCCCC--ccccHHHHH-HHhCCCCCCCCHHHHHHHhcCCCcccHHHH
Confidence 99999975 8999999 999999976 5776542 489998765 4677766789999999988 7641
Q ss_pred -----C------------CCChHHHHHHHHHHHHHHHHHhh
Q 013825 159 -----Q------------THRSLDDVRMNLEVLKYCATVLF 182 (436)
Q Consensus 159 -----~------------~HrALdDAraTa~VLk~L~~~l~ 182 (436)
. .|.|..||.++++++..+.+++.
T Consensus 154 ~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 154 AGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp HCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 15588999999999998877654
No 20
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.55 E-value=2.3e-06 Score=84.39 Aligned_cols=170 Identities=12% Similarity=0.144 Sum_probs=117.8
Q ss_pred CcEEEEEEecCCCCCC--C-----------------CCCcEEEEEEEEEeCCcce----EeeeEEEEEcCCCCCCCChhh
Q 013825 8 SEIAFFDVETTVPTRP--G-----------------QRFAILEFGAILVCPKKLE----ELHNYSTLVRPADPELISSLS 64 (436)
Q Consensus 8 ~~fV~fDLETTGl~p~--g-----------------~~~~IIEIGAV~V~~~~le----vl~sfstLVrP~~~~~I~p~a 64 (436)
-+||++|+|.+|+... + ..-.|||||...++..+.. ..-.|+....+.. ....+..
T Consensus 34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~-d~~~~~S 112 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTE-DMYAQDS 112 (285)
T ss_dssp CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTT-SCCCHHH
T ss_pred CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEecccc-ccccHHH
Confidence 4799999999997431 1 1225999999999865321 2345776677765 2455555
Q ss_pred HHh---cCCCHHHH-hCCCCHHHHHHHHHHH----HcCCEEEEEccccchHHHHHHHHHHcCCCCC-----------CCC
Q 013825 65 VRC---NGITPDAV-VSSPTFADIADTVFDI----LHGRIWAGHNILRFDCARIREAFAEIGRPAP-----------EPK 125 (436)
Q Consensus 65 ~kl---tGIT~e~L-a~Ap~f~eVl~~f~ef----L~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p-----------~~~ 125 (436)
.++ +||.-... +.+.+..+..+.+... ..+..||+|+. .||..+|-+.+-...+|.. +|
T Consensus 113 I~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~-~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP- 190 (285)
T 4gmj_B 113 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSNLPEEELDFFEILRLFFP- 190 (285)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSC-HHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS-
T ss_pred HHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecc-hhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCc-
Confidence 443 78877665 4566665544444332 12568999888 8999999998864434321 13
Q ss_pred ceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhhh
Q 013825 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLFL 183 (436)
Q Consensus 126 ~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~--~~~HrALdDAraTa~VLk~L~~~l~l 183 (436)
.++|+.-|++. . ..+ ..+|+.||+.++++ ...|.|-.|+..|+.+|.+|.+.++.
T Consensus 191 ~vYD~K~l~~~-~-~~l-~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 191 VIYDVKYLMKS-C-KNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp CEEEHHHHGGG-S-TTC-CSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHh-c-ccc-CChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 48888776542 2 222 34799999999998 47899999999999999999988874
No 21
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.55 E-value=1e-07 Score=104.10 Aligned_cols=137 Identities=18% Similarity=0.128 Sum_probs=90.3
Q ss_pred EEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHHHHHHH
Q 013825 10 IAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTVF 89 (436)
Q Consensus 10 fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eVl~~f~ 89 (436)
+|+||+||||+++ ..++|..|.++....+ + .| .++|.. +.+.+..|.
T Consensus 1 ~vv~D~ETtGl~~--~~d~i~~iqi~~~~~~--~---~~--~~~p~~------------------------i~~~l~~L~ 47 (698)
T 1x9m_A 1 MIVSDIEANALLE--SVTKFHCGVIYDYSTA--E---YV--SYRPSD------------------------FGAYLDALE 47 (698)
T ss_dssp CEEEEEEESSCGG--GCCCEEEEEEEETTTT--E---EE--EECGGG------------------------HHHHHHHHH
T ss_pred CEEEEcCCCCcCC--CCCEEEEEEEEecCCC--c---EE--EEChHH------------------------HHHHHHHHH
Confidence 5899999999987 4566654443322111 1 12 333321 233456666
Q ss_pred HHH-cCCEEEEEccccchHHHHHHHHHH---cCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHh--------CC-
Q 013825 90 DIL-HGRIWAGHNILRFDCARIREAFAE---IGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF--------GL- 156 (436)
Q Consensus 90 efL-~g~vLVaHNa~~FD~~fLr~a~~r---~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~f--------GI- 156 (436)
+|+ .+.+.|+||+..||+.+|.+.+.+ .|+..+. ..++||+-+++ .+.+...+++|+.|++.| |.
T Consensus 48 ~~l~~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~-~~~~DTmlaay-LL~p~~~~~~L~~La~~~L~~sL~~~g~~ 125 (698)
T 1x9m_A 48 AEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPR-ENCIDTLVLSR-LIHSNLKDTDMGLLRSGKLPGALEAWGYR 125 (698)
T ss_dssp HHHHTTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCG-GGEEEHHHHHH-HHTTTSCCCTTTTSCGGGSCSCCCHHHHH
T ss_pred HHHhcCCeEEEcCChHHHHHHHHHhhhhcccCCccCCC-CcchhHHHHHH-HhCCCCCCCCHHHHHHHHcccchhhhccc
Confidence 666 467899999559999999987654 3665431 24899997654 677755577777777665 21
Q ss_pred ------C-------------C--C------------CCChHHHHHHHHHHHHHHHHHh
Q 013825 157 ------G-------------Q--Q------------THRSLDDVRMNLEVLKYCATVL 181 (436)
Q Consensus 157 ------~-------------~--~------------~HrALdDAraTa~VLk~L~~~l 181 (436)
+ . . .|.|..||.+|.+++..+..++
T Consensus 126 lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L 183 (698)
T 1x9m_A 126 LGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDK 183 (698)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1 4678999999999999998755
No 22
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.40 E-value=3.9e-06 Score=92.71 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=103.6
Q ss_pred CCcEEEEEEecCC---CCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHH
Q 013825 7 RSEIAFFDVETTV---PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFAD 83 (436)
Q Consensus 7 ~~~fV~fDLETTG---l~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~e 83 (436)
.-++++||+||+| +++ ..+.|+.||++.- .+ ..+ + + .++ |..+.+...++..+
T Consensus 134 ~l~ilsfDIEt~~~~~p~~--~~d~Ii~Is~~~~-~~-~~~---~-t-~~~---------------i~~~~v~~~~~E~~ 189 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEF--GTGPILMISYADG-SE-ARV---I-T-WKK---------------IDLPYVDVVSTEKE 189 (775)
T ss_dssp CCCEEEEEEEECCCTTCCT--TCSCEEEEEEECS-SC-EEE---E-E-SSC---------------CCCSSEEECSCHHH
T ss_pred CcEEEEEEEEEcCCCCCCC--CCCcEEEEEEEec-CC-Cee---E-e-ecc---------------ccccceEEcCCHHH
Confidence 5689999999999 443 5789999986522 21 111 1 1 111 11123455678889
Q ss_pred HHHHHHHHHc---CCEEEEEccccchHHHHHHHHHHcCCCCCC---------------------CCceeeHHHHHHHHhc
Q 013825 84 IADTVFDILH---GRIWAGHNILRFDCARIREAFAEIGRPAPE---------------------PKGTIDSLALLTQRFG 139 (436)
Q Consensus 84 Vl~~f~efL~---g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~---------------------~~~~IDTl~Larr~l~ 139 (436)
.+..|.+++. -.++||||+..||+++|.+.+..+|++... ....+|++.++++.+
T Consensus 190 LL~~f~~~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~- 268 (775)
T 1qht_A 190 MIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI- 268 (775)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS-
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc-
Confidence 9999999987 348999999999999999999998887531 134789999988643
Q ss_pred CCCCCCCHHHHHH-HhCCCCCC--C------------------ChHHHHHHHHHHHHHHHH
Q 013825 140 RRAGDMKMASLAT-YFGLGQQT--H------------------RSLDDVRMNLEVLKYCAT 179 (436)
Q Consensus 140 ~~~~~~kL~~LA~-~fGI~~~~--H------------------rALdDAraTa~VLk~L~~ 179 (436)
.+.+++|+++|+ ++|..... | -.+.||..+..++.++..
T Consensus 269 -~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 269 -NLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp -CCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 457899999998 67875221 0 125688888888776543
No 23
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=98.26 E-value=9.7e-06 Score=82.47 Aligned_cols=167 Identities=16% Similarity=0.103 Sum_probs=102.7
Q ss_pred CCcEEEEEEecCC-CCCCC--CCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhH-----HhcCCC---HH--
Q 013825 7 RSEIAFFDVETTV-PTRPG--QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSV-----RCNGIT---PD-- 73 (436)
Q Consensus 7 ~~~fV~fDLETTG-l~p~g--~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~-----kltGIT---~e-- 73 (436)
.-.++.||+||+| .-|.. ..+.|+.||.+....+ .. ..| .+++....+..+.... .+..++ ..
T Consensus 105 ~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~--~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 180 (388)
T 1noy_A 105 FVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDD--RF-YVF-DLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEIL 180 (388)
T ss_dssp GCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTT--EE-EEE-EECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHH
T ss_pred CeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCC--eE-EEE-EEeeccCCCCCccccccccccccccccccccccC
Confidence 4579999999998 11211 1468999988544333 11 112 2354432111111000 011111 11
Q ss_pred -H--HhCCCCHHHHHHHHHHHHc---CCEEEEEccccchHHHHHHHHHH-cCCC-------CC-----------------
Q 013825 74 -A--VVSSPTFADIADTVFDILH---GRIWAGHNILRFDCARIREAFAE-IGRP-------AP----------------- 122 (436)
Q Consensus 74 -~--La~Ap~f~eVl~~f~efL~---g~vLVaHNa~~FD~~fLr~a~~r-~Gi~-------~p----------------- 122 (436)
. +...++-.+.+..|.+++. -.+++|||+..||+++|.+-+.. +|+. +.
T Consensus 181 ~~v~v~~~~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~ 260 (388)
T 1noy_A 181 DRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIY 260 (388)
T ss_dssp TTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceE
Confidence 1 1345678889999999996 45999999999999999888776 6630 11
Q ss_pred --CCCceeeHHHHHHHHhcCCCCCCCHHHHHH-HhCCCCCCC-C----------------hHHHHHHHHHHHHHH
Q 013825 123 --EPKGTIDSLALLTQRFGRRAGDMKMASLAT-YFGLGQQTH-R----------------SLDDVRMNLEVLKYC 177 (436)
Q Consensus 123 --~~~~~IDTl~Larr~l~~~~~~~kL~~LA~-~fGI~~~~H-r----------------ALdDAraTa~VLk~L 177 (436)
.....+|++.++++.-.....+++|+++|+ ++|..+..| . .+.||..+++++.++
T Consensus 261 ~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 261 SIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp EETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 001278999988763223378999999998 667664334 2 367888888888773
No 24
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.17 E-value=3.3e-05 Score=86.90 Aligned_cols=157 Identities=13% Similarity=0.164 Sum_probs=105.9
Q ss_pred CCcEEEEEEecCC---CCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHH
Q 013825 7 RSEIAFFDVETTV---PTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFAD 83 (436)
Q Consensus 7 ~~~fV~fDLETTG---l~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~e 83 (436)
.-+++.||+||++ ..|....+.|++|+++....|...........+.+.. ++ ....|...++..+
T Consensus 248 plrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~--~~----------~~~~V~~~~sE~e 315 (919)
T 3iay_A 248 PLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCS--PI----------TGSMIFSHATEEE 315 (919)
T ss_dssp CCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCC--CB----------TTBEEEEESSHHH
T ss_pred CceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCC--CC----------CCCeEEECCCHHH
Confidence 3468999999985 2343467899999987766553221111111223222 11 1234566678899
Q ss_pred HHHHHHHHHc---CCEEEEEccccchHHHHHHHHHHcCCCC-CC--------------------------------CCce
Q 013825 84 IADTVFDILH---GRIWAGHNILRFDCARIREAFAEIGRPA-PE--------------------------------PKGT 127 (436)
Q Consensus 84 Vl~~f~efL~---g~vLVaHNa~~FD~~fLr~a~~r~Gi~~-p~--------------------------------~~~~ 127 (436)
.+..|.+++. -.+++|||+..||+++|.+-+..+|++. .. ....
T Consensus 316 LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~ 395 (919)
T 3iay_A 316 MLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQ 395 (919)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEE
Confidence 9999999997 3789999999999999999999888762 10 0137
Q ss_pred eeHHHHHHHHhcCCCCCCCHHHHHHHh-CCCCC--CC---------C----------hHHHHHHHHHHHHHH
Q 013825 128 IDSLALLTQRFGRRAGDMKMASLATYF-GLGQQ--TH---------R----------SLDDVRMNLEVLKYC 177 (436)
Q Consensus 128 IDTl~Larr~l~~~~~~~kL~~LA~~f-GI~~~--~H---------r----------ALdDAraTa~VLk~L 177 (436)
+|++.++++. ....+|+|+++|+++ |.... .| . .+.||..+++++.++
T Consensus 396 lDl~~~~k~~--~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 396 LDLLQFIQRE--YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEHHHHHHHH--CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEhHHHHHhh--cCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988764 357899999998875 54321 11 1 157888888888775
No 25
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=98.09 E-value=2.6e-05 Score=87.03 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=100.6
Q ss_pred CCcEEEEEEec-CC---CCCCCC--CCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCC
Q 013825 7 RSEIAFFDVET-TV---PTRPGQ--RFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPT 80 (436)
Q Consensus 7 ~~~fV~fDLET-TG---l~p~g~--~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~ 80 (436)
.-++++||+|| || ..|... .+.|++||.+ ..++. .. ..++++.. .+..... |....+...++
T Consensus 189 ~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~~~g~---~~-~~~~~~~~---~~~~~~~---i~~~~v~~~~~ 256 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--GSDGL---KK-VLVLNRND---VNEGSVK---LDGISVERFNT 256 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--ETTSC---EE-EEEECSSC---CCCCCEE---ETTEEEEEESS
T ss_pred CceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--ccCCC---cE-EEEEeCCc---ccccccC---CCCCeEEEeCC
Confidence 45789999999 74 223211 3789999985 23211 11 23556543 1111111 22223444678
Q ss_pred HHHHHHHHHHHHcCC-EEEEEccccchHHHHHHHHHHcCCCC---CC-----------CCceeeHHHHHHHH------hc
Q 013825 81 FADIADTVFDILHGR-IWAGHNILRFDCARIREAFAEIGRPA---PE-----------PKGTIDSLALLTQR------FG 139 (436)
Q Consensus 81 f~eVl~~f~efL~g~-vLVaHNa~~FD~~fLr~a~~r~Gi~~---p~-----------~~~~IDTl~Larr~------l~ 139 (436)
..+.+..|.+++... ++||||...||+++|...+.++|+.. |+ +...+|++..+++. +.
T Consensus 257 E~~LL~~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~ 336 (847)
T 1s5j_A 257 EYELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFE 336 (847)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTST
T ss_pred HHHHHHHHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccc
Confidence 999999999999843 79999999999999999999999852 11 23467888765421 12
Q ss_pred CCCCCCCHHHHHH-HhCCCCCC-C-------C------hHHHHHHHHHHH
Q 013825 140 RRAGDMKMASLAT-YFGLGQQT-H-------R------SLDDVRMNLEVL 174 (436)
Q Consensus 140 ~~~~~~kL~~LA~-~fGI~~~~-H-------r------ALdDAraTa~VL 174 (436)
....+++|+++|+ ++|..... + + .+.||..+..++
T Consensus 337 ~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 337 GKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp TCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 2457999999999 55654211 1 1 366999999885
No 26
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.03 E-value=0.00019 Score=69.56 Aligned_cols=170 Identities=13% Similarity=0.164 Sum_probs=115.0
Q ss_pred CcEEEEEEecCCCCCC--C-----------------CCCcEEEEEEEEEeCCcce----EeeeEEEEEcCCCCCCCChhh
Q 013825 8 SEIAFFDVETTVPTRP--G-----------------QRFAILEFGAILVCPKKLE----ELHNYSTLVRPADPELISSLS 64 (436)
Q Consensus 8 ~~fV~fDLETTGl~p~--g-----------------~~~~IIEIGAV~V~~~~le----vl~sfstLVrP~~~~~I~p~a 64 (436)
-+||++|+|.+|+... + ..-.|||+|....+.++.. ..-.|+...+... ....+.+
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~-d~~~~~S 102 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTE-DMYAQDS 102 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTT-SCCCHHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcc-cccCHHH
Confidence 5799999999997431 1 1247999999999865322 2345665544443 2344444
Q ss_pred HH---hcCCCHHHH-hCCCCHHHHHHHHHH---HH-cCCEEEEEccccchHHHHHHHHHHcCCCCC-----------CCC
Q 013825 65 VR---CNGITPDAV-VSSPTFADIADTVFD---IL-HGRIWAGHNILRFDCARIREAFAEIGRPAP-----------EPK 125 (436)
Q Consensus 65 ~k---ltGIT~e~L-a~Ap~f~eVl~~f~e---fL-~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p-----------~~~ 125 (436)
.+ -+||.-+.. +.+.+..+..+.+.. .+ ..-.||+|+. .+|.++|-+.+-...+|.- +|
T Consensus 103 i~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg-~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP- 180 (252)
T 2d5r_A 103 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSNLPEEELDFFEILRLFFP- 180 (252)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSC-HHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS-
T ss_pred HHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecC-cchHHHHHHHhcCCCCCCCHHHHHHHHHHHCc-
Confidence 33 468887665 456666644333332 11 1348999998 9999999888763333221 23
Q ss_pred ceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhhh
Q 013825 126 GTIDSLALLTQRFGRRAGDMKMASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLFL 183 (436)
Q Consensus 126 ~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~--~~~HrALdDAraTa~VLk~L~~~l~l 183 (436)
.++|+.-+++.. ..+ ..+|+.||+.+|+. ...|.|-.|+..|..+|.+|.+.++.
T Consensus 181 ~iyD~K~l~~~~--~~l-~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~ 237 (252)
T 2d5r_A 181 VIYDVKYLMKSC--KNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 237 (252)
T ss_dssp CEEEHHHHGGGC--TTC-CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred chhhHHHHHHHh--ccc-CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcC
Confidence 488987765432 223 45799999999998 47899999999999999999988763
No 27
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.93 E-value=0.00042 Score=68.47 Aligned_cols=173 Identities=12% Similarity=0.119 Sum_probs=114.1
Q ss_pred CCCcEEEEEEecCCCCCC--C-----------------CCCcEEEEEEEEEeCCcce-----EeeeEEEEEcCCCCCCCC
Q 013825 6 DRSEIAFFDVETTVPTRP--G-----------------QRFAILEFGAILVCPKKLE-----ELHNYSTLVRPADPELIS 61 (436)
Q Consensus 6 ~~~~fV~fDLETTGl~p~--g-----------------~~~~IIEIGAV~V~~~~le-----vl~sfstLVrP~~~~~I~ 61 (436)
.+-+||++|+|.+|+... + ..-.|||+|....+.++.. ..-.|+...+... ....
T Consensus 36 ~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~-d~~~ 114 (289)
T 1uoc_A 36 SQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKK-EIMS 114 (289)
T ss_dssp TTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTC-CCCC
T ss_pred hhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCcc-cccc
Confidence 456899999999997421 1 2347999999999865332 2355666655443 2344
Q ss_pred hhhH---HhcCCCHHHH-hCCCCHHHHHHHHHHH---H-cCCEEEEEccccchHHHHHHHHHHcCCCCCC----------
Q 013825 62 SLSV---RCNGITPDAV-VSSPTFADIADTVFDI---L-HGRIWAGHNILRFDCARIREAFAEIGRPAPE---------- 123 (436)
Q Consensus 62 p~a~---kltGIT~e~L-a~Ap~f~eVl~~f~ef---L-~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~---------- 123 (436)
+.+. +-+||.-... +.+.++.+..+.+..- + ..-.||+++. .||.++|-+.+.. .+.|.
T Consensus 115 ~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg-~yDfgyL~k~Lt~--~~LP~~~~~F~~~l~ 191 (289)
T 1uoc_A 115 TESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHA-AYDLGFLINILMN--DSMPNNKEDFEWWVH 191 (289)
T ss_dssp HHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESST-THHHHHHHHHHTT--SCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccC-cchHHHHHHHhcc--ccCCcCHHHHHHHHH
Confidence 4333 3568877665 4566665433333220 1 1348999997 9999999888753 33332
Q ss_pred --CCceeeHHHHHHHHhcCC------------CCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhh
Q 013825 124 --PKGTIDSLALLTQRFGRR------------AGDMKMASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLF 182 (436)
Q Consensus 124 --~~~~IDTl~Larr~l~~~------------~~~~kL~~LA~~fGI~--~~~HrALdDAraTa~VLk~L~~~l~ 182 (436)
...++|+.-+++....-. ....+|+.||+.+|++ ...|.|-.|+..|+.+|.++.+..+
T Consensus 192 ~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~~ 266 (289)
T 1uoc_A 192 QYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSM 266 (289)
T ss_dssp HHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHHh
Confidence 124899988766432111 1235799999999998 3689999999999999999998876
No 28
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.90 E-value=0.00048 Score=69.23 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=117.5
Q ss_pred CCCcEEEEEEecCCCCCC--C-----------------CCCcEEEEEEEEEeCCcce----EeeeEEEEEcCCCCCCCCh
Q 013825 6 DRSEIAFFDVETTVPTRP--G-----------------QRFAILEFGAILVCPKKLE----ELHNYSTLVRPADPELISS 62 (436)
Q Consensus 6 ~~~~fV~fDLETTGl~p~--g-----------------~~~~IIEIGAV~V~~~~le----vl~sfstLVrP~~~~~I~p 62 (436)
.+-.||++|+|.+|+... + +.-.|||||....+.++.. ..-+|+...+... ....+
T Consensus 43 ~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~-d~~~~ 121 (333)
T 2p51_A 43 ERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQD-DMYAP 121 (333)
T ss_dssp TTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTT-SCCCH
T ss_pred hhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcc-cccCH
Confidence 456899999999997532 1 1136999999999865432 2455666655443 23444
Q ss_pred hhHH---hcCCCHHHH-hCCCCHHHHHHHHHH---HHc-CCEEEEEccccchHHHHHHHHHHcCCCCCCC----------
Q 013825 63 LSVR---CNGITPDAV-VSSPTFADIADTVFD---ILH-GRIWAGHNILRFDCARIREAFAEIGRPAPEP---------- 124 (436)
Q Consensus 63 ~a~k---ltGIT~e~L-a~Ap~f~eVl~~f~e---fL~-g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~---------- 124 (436)
...+ -+||.-+.. ..+.++.+..+.+.. .+. .-.||.++. .||.++|-+.+- +.+.|..
T Consensus 122 ~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg-~YDfgyLlK~Lt--~~~LP~~~~eF~~~l~~ 198 (333)
T 2p51_A 122 ESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHS-GYDFAYLLKAMT--QIPLPAEYEEFYKILCI 198 (333)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSC-HHHHHHHHHHHH--CSCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEecc-chhHHHHHHHhc--CCCCCCCHHHHHHHHHH
Confidence 4433 458887665 556666654444432 111 358999998 999999988875 3344421
Q ss_pred --CceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhhhh
Q 013825 125 --KGTIDSLALLTQRFGRRAGDMKMASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLFLE 184 (436)
Q Consensus 125 --~~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~--~~~HrALdDAraTa~VLk~L~~~l~le 184 (436)
..++|+.-|++... .+ ..+|+.+|+.||+. ...|.|-.|+..|+.+|.+|.+.++..
T Consensus 199 ~FP~iYD~K~l~~~~~--~l-~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~f~~ 259 (333)
T 2p51_A 199 YFPKNYDIKYIMKSVL--NN-SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDG 259 (333)
T ss_dssp HSSSEEEHHHHHTTTT--CC-CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCcchhhHHHHHHHhc--cc-cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHhcCC
Confidence 24788877654321 22 45899999999998 478999999999999999999988743
No 29
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.73 E-value=0.00039 Score=80.19 Aligned_cols=167 Identities=12% Similarity=0.142 Sum_probs=101.8
Q ss_pred CCcEEEEEEecCCCC------CCC--CCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhh---HHhcCCCHHHH
Q 013825 7 RSEIAFFDVETTVPT------RPG--QRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLS---VRCNGITPDAV 75 (436)
Q Consensus 7 ~~~fV~fDLETTGl~------p~g--~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a---~kltGIT~e~L 75 (436)
.-+++.||+||++.. |.. ..+.|++|+.+....+.... ....++.... ...++.. .+-.++....|
T Consensus 319 ~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~--~~~~v~~l~~-~~~~~~f~~~~k~~~~~~~~V 395 (1193)
T 2gv9_A 319 AYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTAL--EHVLLFSLGS-CDLPESHLNELAARGLPTPVV 395 (1193)
T ss_dssp CCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCE--EEEEEEEESC-CCCCHHHHHHHHHTTCCCCEE
T ss_pred CceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCc--ceEEEEECCC-cCCcchhhhhcccccCCCceE
Confidence 357999999998641 111 25789999988775432111 1111222111 1122111 11122211124
Q ss_pred hCCCCHHHHHHHHHHHHc---CCEEEEEccccchHHHHHHHH-HHcCCCCCCC---------------------------
Q 013825 76 VSSPTFADIADTVFDILH---GRIWAGHNILRFDCARIREAF-AEIGRPAPEP--------------------------- 124 (436)
Q Consensus 76 a~Ap~f~eVl~~f~efL~---g~vLVaHNa~~FD~~fLr~a~-~r~Gi~~p~~--------------------------- 124 (436)
....+-.+.+..|++++. -.+++|||+..||+++|.+-+ ..+|++.+.+
T Consensus 396 ~~~~sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i 475 (1193)
T 2gv9_A 396 LEFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKV 475 (1193)
T ss_dssp EEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEE
T ss_pred EecCCHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEE
Confidence 455778899999999997 359999999999999988775 5567654310
Q ss_pred --CceeeHHHHHHHHhcCCCCCCCHHHHHHH-hCCCCC--CCC-------------------hHHHHHHHHHHHHHHH
Q 013825 125 --KGTIDSLALLTQRFGRRAGDMKMASLATY-FGLGQQ--THR-------------------SLDDVRMNLEVLKYCA 178 (436)
Q Consensus 125 --~~~IDTl~Larr~l~~~~~~~kL~~LA~~-fGI~~~--~Hr-------------------ALdDAraTa~VLk~L~ 178 (436)
...+|++.++++.+ ...+|+|+++|++ +|.... .+. .+.||..+.+++.+++
T Consensus 476 ~GRv~lDl~~~~~~~~--kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl~ 551 (1193)
T 2gv9_A 476 NGMVNIDMYGIITDKI--KLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFL 551 (1193)
T ss_dssp TTBEEEEHHHHHTTTC--CCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCeEeehHHHHHHHHh--ccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13678888765422 4689999999985 665421 111 2468888888887763
No 30
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=97.71 E-value=6.2e-05 Score=80.12 Aligned_cols=122 Identities=12% Similarity=0.034 Sum_probs=91.5
Q ss_pred CCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHH
Q 013825 5 QDRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADI 84 (436)
Q Consensus 5 ~~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eV 84 (436)
....+.+++|+|+.+.++ ....++-|+.. .++ + .| ++ + .+
T Consensus 7 ~~~p~~valDtE~~~~~~--~~a~Lvgi~la--~~~--~---a~--~i--------~---------------------~~ 46 (540)
T 4dfk_A 7 WPPPEGAFVGFVLSRKEP--MWADLLALAAA--RGG--R---VH--RA--------P---------------------EP 46 (540)
T ss_dssp SCCCTTCEEEEEESSSCT--TTCCEEEEEEE--ETT--E---EE--EC--------S---------------------SH
T ss_pred CCCCCceEEEEEecCCcc--CcccEEEEEEE--cCC--E---EE--Ee--------h---------------------hh
Confidence 345577999999999987 56667555443 233 1 12 11 0 25
Q ss_pred HHHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCCCCCCChH
Q 013825 85 ADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSL 164 (436)
Q Consensus 85 l~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~~~~HrAL 164 (436)
+..|.+|+.+...|+||+ .||+. ++|+... ..+||+-++. .+.+. +++|+.||+.|... -.|+|.
T Consensus 47 l~~l~~~l~d~~kV~hn~-K~Dl~-------~~Gi~~~---~~fDT~laAy-LL~p~--~~~L~~La~~yl~~-~gk~a~ 111 (540)
T 4dfk_A 47 YKALRDLKEARGLLAKDL-SVLAL-------REGLGLP---PGDDPMLLAY-LLDPS--NTTPEGVARRYGGE-WTEEAG 111 (540)
T ss_dssp HHHHTTCSSBCSTTHHHH-HHHHH-------HTTCCCC---BCCCHHHHHH-HHCTT--CCCHHHHHHHHTSC-CCSCHH
T ss_pred HHHHHHHHcCCCEEEecc-HHHHH-------HcCCCCC---cceeHHHHHH-HhCCC--CCCHHHHHHHHhhh-hccchH
Confidence 677888898877899999 99998 5788754 4789986554 67776 89999999999643 347899
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013825 165 DDVRMNLEVLKYCATVL 181 (436)
Q Consensus 165 dDAraTa~VLk~L~~~l 181 (436)
.||.++.+++..+.+++
T Consensus 112 ~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 112 ERAALSERLFANLWGRL 128 (540)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998887
No 31
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=97.39 E-value=0.0035 Score=69.52 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=97.5
Q ss_pred CCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHHH
Q 013825 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIA 85 (436)
Q Consensus 6 ~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eVl 85 (436)
..-+++.||+|+.+- +.|+.||.- ..+. +.. ..+.+... .- .+....|...++-.+.+
T Consensus 151 p~lrilsfDIE~~~~------g~i~~I~~~--~~~~----~~v-~~l~~~~~-~~--------~~~~~~V~~f~~E~~lL 208 (786)
T 3k59_A 151 PPLKWVSIDIETTRH------GELYCIGLE--GCGQ----RIV-YMLGPENG-DA--------SSLDFELEYVASRPQLL 208 (786)
T ss_dssp CCCCEEEEEEEECTT------SCEEEEEEE--ETTE----EEE-EEESSCCS-CC--------TTCSSEEEEESSHHHHH
T ss_pred CCCeEEEEEEEEcCC------CCEEEEEec--CCCC----CeE-EEEecCCC-CC--------CCCCceEEEeCCHHHHH
Confidence 346799999999942 369898742 2221 111 12332210 00 01111344456788899
Q ss_pred HHHHHHHc---CCEEEEEccccchHHHHHHHHHHcCCCCCC------------------------CCceeeHHHHHHHHh
Q 013825 86 DTVFDILH---GRIWAGHNILRFDCARIREAFAEIGRPAPE------------------------PKGTIDSLALLTQRF 138 (436)
Q Consensus 86 ~~f~efL~---g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~------------------------~~~~IDTl~Larr~l 138 (436)
..|.+++. -.+++|||+..||+++|.+-+..+|++... ....+|++.+++...
T Consensus 209 ~~f~~~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~ 288 (786)
T 3k59_A 209 EKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAF 288 (786)
T ss_dssp HHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhcc
Confidence 99999987 358999999999999999999888876311 012688888876422
Q ss_pred cCCCCCCCHHHHHHHh-CCCCCCCCh----------------------HHHHHHHHHHHHHH
Q 013825 139 GRRAGDMKMASLATYF-GLGQQTHRS----------------------LDDVRMNLEVLKYC 177 (436)
Q Consensus 139 ~~~~~~~kL~~LA~~f-GI~~~~HrA----------------------LdDAraTa~VLk~L 177 (436)
....+|+|+++|+++ |..+..|.. +.||..+.+++.++
T Consensus 289 -~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 289 -WNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp -CCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999986 444433432 57888888888774
No 32
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=97.38 E-value=0.0025 Score=71.62 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=103.4
Q ss_pred CCCcEEEEEEecCCCCCC----CCCCcEEEEEEEEEeCCcceEeeeEEE--EEc-CCC-CCCCChhh------HHhcCCC
Q 013825 6 DRSEIAFFDVETTVPTRP----GQRFAILEFGAILVCPKKLEELHNYST--LVR-PAD-PELISSLS------VRCNGIT 71 (436)
Q Consensus 6 ~~~~fV~fDLETTGl~p~----g~~~~IIEIGAV~V~~~~levl~sfst--LVr-P~~-~~~I~p~a------~kltGIT 71 (436)
..-+.+.||+|++..+.. ....+|+-|+..--..+ +|.. +++ |.. ..++.... ..-..+.
T Consensus 106 ~~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (903)
T 3qex_A 106 TKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDD------RFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVP 179 (903)
T ss_dssp GGSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTT------EEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCC
T ss_pred ccccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCC------EEEEEEeeccccccccccccccccccccccccccc
Confidence 356799999999873221 13678998888733333 2333 223 211 00121110 0112234
Q ss_pred HHHHhC-----CCCHHHHHHHHHHHHc---CCEEEEEccccchHHHHHHHHHH-cCCCC-----C--C------------
Q 013825 72 PDAVVS-----SPTFADIADTVFDILH---GRIWAGHNILRFDCARIREAFAE-IGRPA-----P--E------------ 123 (436)
Q Consensus 72 ~e~La~-----Ap~f~eVl~~f~efL~---g~vLVaHNa~~FD~~fLr~a~~r-~Gi~~-----p--~------------ 123 (436)
.+.+.+ .++-.+.+..|.+++. -.+++|||+..||+++|.+-+.. +|++. + .
T Consensus 180 ~~~~~~v~v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~ 259 (903)
T 3qex_A 180 SEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGS 259 (903)
T ss_dssp HHHHTTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEE
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCC
Confidence 443333 4678899999999997 46999999999999999888876 57421 0 0
Q ss_pred -------CCceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCC-CCCC-C----------------hHHHHHHHHHHHHH
Q 013825 124 -------PKGTIDSLALLTQRFGRRAGDMKMASLATYFGLG-QQTH-R----------------SLDDVRMNLEVLKY 176 (436)
Q Consensus 124 -------~~~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~-~~~H-r----------------ALdDAraTa~VLk~ 176 (436)
....+|++.++++.-...+.+++|+++|+++... ...+ . .+.||..+++++.+
T Consensus 260 ~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 260 REIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp EEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1237899998875223457899999999987443 3222 1 15799999999876
No 33
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=96.32 E-value=0.052 Score=56.11 Aligned_cols=134 Identities=9% Similarity=0.067 Sum_probs=86.4
Q ss_pred CCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHHHH
Q 013825 7 RSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIAD 86 (436)
Q Consensus 7 ~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eVl~ 86 (436)
....+.||+||++..+ ..+.+ +.+-+..+. . ..+|.|.. + + +.+.
T Consensus 128 ~~~~vavDtE~~~~~~--~~~~l---~lIQLa~~~----~--~~lidpl~---l--------~-------------~~l~ 172 (428)
T 3saf_A 128 NCQEFAVNLEHHSYRS--FLGLT---CLMQISTRT----E--DFIIDTLE---L--------R-------------SDMY 172 (428)
T ss_dssp TCSEEEEEEEEECTTC--SSCEE---EEEEEECSS----C--EEEEETTT---T--------G-------------GGGG
T ss_pred cCCeEEEEEEecCCCC--CCCeE---EEEEEEeCC----c--EEEEEecc---c--------h-------------hhHH
Confidence 3568999999998765 33433 333333331 1 23666655 1 0 1123
Q ss_pred HHHHHHcC--CEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHh-CCC--C--C
Q 013825 87 TVFDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLG--Q--Q 159 (436)
Q Consensus 87 ~f~efL~g--~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~f-GI~--~--~ 159 (436)
.|..++.+ .+-|+||+ .+|+..|.+. +|+... .++||+-. ...++. +.++|+.|++.| |+. + +
T Consensus 173 ~L~~lL~dp~i~KV~H~~-k~Dl~~L~~~---~Gi~~~---~~fDT~lA-a~lL~~--~~~gL~~Lv~~~Lg~~l~K~~~ 242 (428)
T 3saf_A 173 ILNESLTDPAIVKVFHGA-DSDIEWLQKD---FGLYVV---NMFDTHQA-ARLLNL--GRHSLDHLLKLYCNVDSNKQYQ 242 (428)
T ss_dssp GGHHHHTCTTSEEEESSC-HHHHHHHHHH---HCCCCS---SEEEHHHH-HHHTTC--SCCSHHHHHHHHHCCCCCCTTT
T ss_pred HHHHHHcCCCceEEEeeh-HHHHHHHHHH---cCCCcC---ceeechhH-HHHhCC--CCCCHHHHHHHHcCCCCCcccc
Confidence 45566664 46699999 9999988643 477642 48999864 445654 357999999865 654 1 1
Q ss_pred -------------CCChHHHHHHHHHHHHHHHHHhhhhc
Q 013825 160 -------------THRSLDDVRMNLEVLKYCATVLFLES 185 (436)
Q Consensus 160 -------------~HrALdDAraTa~VLk~L~~~l~le~ 185 (436)
.+-|..||..+..++..+..+|....
T Consensus 243 ~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g 281 (428)
T 3saf_A 243 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 281 (428)
T ss_dssp TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 12366899999999999998876543
No 34
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=96.23 E-value=0.028 Score=58.13 Aligned_cols=97 Identities=20% Similarity=0.269 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCC-------------CCCceeeHHHHHHHH-hcCCCCCC
Q 013825 80 TFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP-------------EPKGTIDSLALLTQR-FGRRAGDM 145 (436)
Q Consensus 80 ~f~eVl~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p-------------~~~~~IDTl~Larr~-l~~~~~~~ 145 (436)
-|..+++.+.+ .+.++||||. =+|+.++-..|. | +.| +| .++||.-|+... +....++.
T Consensus 269 Gfr~V~~~L~~--s~KpiVGHN~-llDl~~l~~~F~--~-pLP~~~~eFk~~i~~lFP-~i~DTK~la~~~~~~~~~~~~ 341 (430)
T 2a1r_A 269 GFSRVIHAIAN--SGKLVIGHNM-LLDVMHTVHQFY--C-PLPADLSEFKEMTTCVFP-RLLDTKLMASTQPFKDIINNT 341 (430)
T ss_dssp BTHHHHHHHHH--HCCEEEESSC-HHHHHHHHHHHT--C-CCCSSHHHHHHHHHHHCS-SEEEHHHHHTSTTTTTTCSCC
T ss_pred hHHHHHHHHHh--CCCceEechh-HHHHHHHHHHhc--c-CCCCCHHHHHHHHHHHCC-ceeehHHhhhccchhhccCCC
Confidence 34444444433 3789999999 999998877662 2 333 23 499997665421 12234567
Q ss_pred CHHHHHHHhCCC--------------------CCCCChHHHHHHHHHHHHHHHHHhhh
Q 013825 146 KMASLATYFGLG--------------------QQTHRSLDDVRMNLEVLKYCATVLFL 183 (436)
Q Consensus 146 kL~~LA~~fGI~--------------------~~~HrALdDAraTa~VLk~L~~~l~l 183 (436)
+|..|..++.-. ...|.|-.||.+|+.+|.++...++.
T Consensus 342 sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~~ 399 (430)
T 2a1r_A 342 SLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGS 399 (430)
T ss_dssp SHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 899999977421 23699999999999999999987754
No 35
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=96.10 E-value=0.011 Score=62.21 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCC-------------CCCceeeHHHHHHHH-hcCCCCCC
Q 013825 80 TFADIADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAP-------------EPKGTIDSLALLTQR-FGRRAGDM 145 (436)
Q Consensus 80 ~f~eVl~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p-------------~~~~~IDTl~Larr~-l~~~~~~~ 145 (436)
-|..+++.+.+ .+.+|||||. -+|+.+|-+.|- -+.| +| .++||.-|+... +....++.
T Consensus 264 Gfr~v~~~L~~--~~kpiVgHN~-l~Dl~~l~~~F~---~pLP~~~~eFk~~i~~lFP-~i~DTK~la~~~~~~~~~~~~ 336 (507)
T 3d45_A 264 GFSRVIHAIAN--SGKLVVGHNM-LLDVMHTIHQFY---CPLPADLNEFKEMAICVFP-RLLDTKLMASTQPFKDIINNT 336 (507)
T ss_dssp BTHHHHHHHHH--HCCEEEESSC-HHHHHHHHHHHT---CSCCSSHHHHHHHHHHHCS-CEEEHHHHTTSTTHHHHCCCC
T ss_pred hHHHHHHHHHh--CCCeEEEech-HHHHHHHHHHhc---CCCCCCHHHHHHHHHHhCC-ceeEhHhhhhcCccccccCCC
Confidence 34444444442 3789999999 999999988873 2334 23 489997765420 11123467
Q ss_pred CHHHHHHHhCC-----C---------------CCCCChHHHHHHHHHHHHHHHHHhh
Q 013825 146 KMASLATYFGL-----G---------------QQTHRSLDDVRMNLEVLKYCATVLF 182 (436)
Q Consensus 146 kL~~LA~~fGI-----~---------------~~~HrALdDAraTa~VLk~L~~~l~ 182 (436)
+|..|++.+.. + ...|.|-.||.+|+.+|.++...+.
T Consensus 337 ~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 337 SLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 89999999862 2 1369999999999999999998764
No 36
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=95.97 E-value=0.048 Score=58.62 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=87.6
Q ss_pred cEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHHHHHH
Q 013825 9 EIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIADTV 88 (436)
Q Consensus 9 ~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eVl~~f 88 (436)
.-..+|+||++.++ ....++-|+.. .++ +. .||.+. + ..+++.|
T Consensus 30 ~~~aldtE~~~~~~--~~a~Lvgisla--~~~-----~a--~yIp~~------------~-------------~~~l~~L 73 (592)
T 3pv8_A 30 DKAALVVEVVEENY--HDAPIVGIAVV--NEH-----GR--FFLRPE------------T-------------ALADPQF 73 (592)
T ss_dssp SEEEEEEECCSSSC--TTCCCCEEEEE--ETT-----EE--EEECHH------------H-------------HTTCHHH
T ss_pred cCcEEEEEEcCCcc--CcccEEEEEEE--cCC-----ce--EEEccc------------h-------------hhHHHHH
Confidence 34689999999987 55666444332 222 11 244211 0 1234568
Q ss_pred HHHHcC--CEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHh-CCCC-------
Q 013825 89 FDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLGQ------- 158 (436)
Q Consensus 89 ~efL~g--~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~f-GI~~------- 158 (436)
..|+.+ ...|+||+ .||+.+|. ++|+..+. .++||+- +...+.+...+++|+.|++.| |...
T Consensus 74 k~lLed~~i~KV~hn~-K~Dl~vL~----~~Gi~l~g--~~fDTmL-AAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~ 145 (592)
T 3pv8_A 74 VAWLGDETKKKSMFDS-KRAAVALK----WKGIELCG--VSFDLLL-AAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVY 145 (592)
T ss_dssp HHHHTCTTSEEEESSH-HHHHHHHH----HTTCCCCC--EEEEHHH-HHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHH
T ss_pred HHHHhCCCCeEEEech-HHHHHHHH----HcCCCCCC--ccchHHH-HHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhc
Confidence 888875 47899999 99999885 46887643 4789985 455777766689999999977 3321
Q ss_pred -------------CCCChHHHHHHHHHHHHHHHHHhh
Q 013825 159 -------------QTHRSLDDVRMNLEVLKYCATVLF 182 (436)
Q Consensus 159 -------------~~HrALdDAraTa~VLk~L~~~l~ 182 (436)
..+-|..||..+.+++..+..+|.
T Consensus 146 gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~ 182 (592)
T 3pv8_A 146 GKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 182 (592)
T ss_dssp CSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 013357799999999998888764
No 37
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=95.93 E-value=0.12 Score=46.98 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=61.2
Q ss_pred HHHHHHHcC--CEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHh-CCCC----
Q 013825 86 DTVFDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLGQ---- 158 (436)
Q Consensus 86 ~~f~efL~g--~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~f-GI~~---- 158 (436)
..+.+++.+ ...|+||+ .+|+..|.+. +|+... .++|+..++...+.+ ..+++|+.|++.| |...
T Consensus 86 ~~L~~lL~d~~i~Kv~~~~-k~D~~~L~~~---~gi~~~---~~fDlt~lAayll~~-~~~~~L~~L~~~~l~~~~~K~k 157 (208)
T 2e6m_A 86 QGLKMLLENKSIKKAGVGI-EGDQWKLLRD---FDVKLE---SFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDK 157 (208)
T ss_dssp HHHHHHHTCTTSEEEESSH-HHHHHHHHHH---HCCCCC---SEEEHHHHHHHHTTC-CCCCCHHHHHHHHHSCBCCCCH
T ss_pred HHHHHHhcCCCceEEEEee-HHHHHHHHHH---CCCCCC---CEEEHHHHHHHHccC-CCChhHHHHHHHHcCCCcCCCC
Confidence 356677764 47899999 9999988753 477543 389954566666665 3578999999987 6431
Q ss_pred --------C-------CCChHHHHHHHHHHHHHHHHHhh
Q 013825 159 --------Q-------THRSLDDVRMNLEVLKYCATVLF 182 (436)
Q Consensus 159 --------~-------~HrALdDAraTa~VLk~L~~~l~ 182 (436)
. .+-|..||.++.+++..+.+++.
T Consensus 158 ~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~ 196 (208)
T 2e6m_A 158 SIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGD 196 (208)
T ss_dssp HHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 11156888888888888766543
No 38
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=95.74 E-value=0.26 Score=49.41 Aligned_cols=89 Identities=18% Similarity=0.098 Sum_probs=64.2
Q ss_pred HHHHHHHcC--CEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHh-CCCC-CCC
Q 013825 86 DTVFDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLGQ-QTH 161 (436)
Q Consensus 86 ~~f~efL~g--~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~f-GI~~-~~H 161 (436)
..|.+++.+ ...|+||+ .+|+..|.+. +|+... .++||+-. ...+++ ..+++|+.|++.| |... ..|
T Consensus 64 ~~L~~ll~d~~i~Kv~h~~-k~Dl~~L~~~---~Gi~~~---~~fDt~lA-a~lL~~-~~~~~L~~L~~~~l~~~l~K~~ 134 (375)
T 1yt3_A 64 SPLKAILRDPSITKFLHAG-SEDLEVFLNV---FGELPQ---PLIDTQIL-AAFCGR-PMSWGFASMVEEYSGVTLDKSE 134 (375)
T ss_dssp HHHHHHHHCTTSEEEESSC-HHHHHHHHHH---HSSCCS---SEEEHHHH-HHHTTC-CTTCCHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHcCCCceEEEeeH-HHHHHHHHHH---cCCCCC---cEEEcHHH-HHHcCC-CCChhHHHHHHHHcCCCCCCCc
Confidence 456667764 46799999 9999999753 477643 48999865 446665 2478999999977 7641 111
Q ss_pred ----------C------hHHHHHHHHHHHHHHHHHhhh
Q 013825 162 ----------R------SLDDVRMNLEVLKYCATVLFL 183 (436)
Q Consensus 162 ----------r------ALdDAraTa~VLk~L~~~l~l 183 (436)
. |..||..+..++..+.+++..
T Consensus 135 ~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~ 172 (375)
T 1yt3_A 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 567999999999999888754
No 39
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=95.68 E-value=0.14 Score=52.29 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=66.6
Q ss_pred HHHHHHHcC--CEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHh-CCC-CCC-
Q 013825 86 DTVFDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLG-QQT- 160 (436)
Q Consensus 86 ~~f~efL~g--~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~f-GI~-~~~- 160 (436)
..|.+++.+ ...|+||+ .+|+..|.+. +|+... .++||+-. ...++. ++++|+.|++.| |.. ...
T Consensus 149 ~~L~~lL~d~~i~KV~h~~-k~Dl~~L~~~---~Gi~~~---~~fDt~lA-a~LL~~--~~~~L~~L~~~~lg~~l~K~~ 218 (410)
T 2hbj_A 149 HILNEVFTNPSIVKVFHGA-FMDIIWLQRD---LGLYVV---GLFDTYHA-SKAIGL--PRHSLAYLLENFANFKTSKKY 218 (410)
T ss_dssp GGGHHHHTCTTSEEEESSC-HHHHHHHHHH---HCCCCS---SEEEHHHH-HHHHTC--SCCSHHHHHHHHSCCCCCCTT
T ss_pred HHHHHHHcCCCceEEEEeh-HHHHHHHHHH---cCCCcC---CEEEcHHH-HHHhCC--CccCHHHHHHHHcCCCCCccc
Confidence 346666764 46799999 9999999764 377543 38999854 446665 368999999988 654 110
Q ss_pred ---------------CChHHHHHHHHHHHHHHHHHhhhhcCcch
Q 013825 161 ---------------HRSLDDVRMNLEVLKYCATVLFLESSLPD 189 (436)
Q Consensus 161 ---------------HrALdDAraTa~VLk~L~~~l~le~slp~ 189 (436)
+-|..||..+..++..+..+|.....+.+
T Consensus 219 ~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~~~ 262 (410)
T 2hbj_A 219 QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAG 262 (410)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHh
Confidence 11568999999999999988765544433
No 40
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=95.67 E-value=0.16 Score=47.28 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=63.0
Q ss_pred HHHHHHcC--CEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCC-CCCCCHHHHHHHh-CCCC----
Q 013825 87 TVFDILHG--RIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRR-AGDMKMASLATYF-GLGQ---- 158 (436)
Q Consensus 87 ~f~efL~g--~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~-~~~~kL~~LA~~f-GI~~---- 158 (436)
.|.+++.+ .+.|||++ ++|+..|++.+ |+.. ..++|+..++...++.. ....+|..|++.+ |++-
T Consensus 99 ~L~~lL~d~~i~Kvg~~~-~~D~~~L~~~~---g~~~---~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~ 171 (206)
T 1vk0_A 99 DLYRFFASKFVTFVGVQI-EEDLDLLRENH---GLVI---RNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLD 171 (206)
T ss_dssp HHHHHHTCSSSEEEESSC-HHHHHHHHHHH---CCCC---SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHH
T ss_pred HHHHHhcCCCceEEEecc-HHHHHHHHHhc---CCCc---CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCC
Confidence 36667764 57899999 99999997654 7653 35899988887667652 4567899998854 6543
Q ss_pred -------------CCCChHHHHHHHHHHHHHHHH
Q 013825 159 -------------QTHRSLDDVRMNLEVLKYCAT 179 (436)
Q Consensus 159 -------------~~HrALdDAraTa~VLk~L~~ 179 (436)
+-+=|..||.+..+++.++.+
T Consensus 172 ~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 172 SIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 234478899999999988753
No 41
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=95.41 E-value=0.17 Score=54.07 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=79.5
Q ss_pred CCCcEEEEEEecCCCCCCCCCCcEEEEEEEEEeCCcceEeeeEEEEEcCCCCCCCChhhHHhcCCCHHHHhCCCCHHHHH
Q 013825 6 DRSEIAFFDVETTVPTRPGQRFAILEFGAILVCPKKLEELHNYSTLVRPADPELISSLSVRCNGITPDAVVSSPTFADIA 85 (436)
Q Consensus 6 ~~~~fV~fDLETTGl~p~g~~~~IIEIGAV~V~~~~levl~sfstLVrP~~~~~I~p~a~kltGIT~e~La~Ap~f~eVl 85 (436)
..+.++++|+||+.- + ..+.++-+|+. +++. ...|... . . +
T Consensus 4 ~~~~i~~~D~Et~~d-~--~~~~~~~i~~~--~~~~---~~~~~~~------------------~---------~----l 44 (575)
T 2py5_A 4 MPRKMYSCAFETTTK-V--EDCRVWAYGYM--NIED---HSEYKIG------------------N---------S----L 44 (575)
T ss_dssp -CCCEEEEEEEECCB-T--TBCCEEEEEEE--ESSC---TTCEEEE------------------S---------C----H
T ss_pred ccceEEEEEEEeecC-C--CCCceEEEEEE--eCCc---eEEEEec------------------h---------h----H
Confidence 456799999999763 2 46678888873 3331 1223110 0 1 2
Q ss_pred HHHHHHHc--CCEEEEEccccchHHHHHHHHHHcCCC-------CC------CC-------------------CceeeHH
Q 013825 86 DTVFDILH--GRIWAGHNILRFDCARIREAFAEIGRP-------AP------EP-------------------KGTIDSL 131 (436)
Q Consensus 86 ~~f~efL~--g~vLVaHNa~~FD~~fLr~a~~r~Gi~-------~p------~~-------------------~~~IDTl 131 (436)
.+|.+|+. +..+++||. .||..+|.+.+...|.. .. .. ..++|++
T Consensus 45 ~~fi~~~~~~~~~i~~hNl-~FD~~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~ 123 (575)
T 2py5_A 45 DEFMAWVLKVQADLYFHNL-KFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSL 123 (575)
T ss_dssp HHHHHHHHHHCCEEEETTH-HHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHH
T ss_pred HHHHHHHHHcCCEEEEECh-hhhHHHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhH
Confidence 44555553 578889999 99999999999888521 11 00 1345555
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCCC----CC----------C------hHHHHHHHHHHHHHHHH
Q 013825 132 ALLTQRFGRRAGDMKMASLATYFGLGQQ----TH----------R------SLDDVRMNLEVLKYCAT 179 (436)
Q Consensus 132 ~Larr~l~~~~~~~kL~~LA~~fGI~~~----~H----------r------ALdDAraTa~VLk~L~~ 179 (436)
.++ ..+|+.+++.|+++.. .| + .+.||+.+++++...+.
T Consensus 124 ~~~---------~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~ 182 (575)
T 2py5_A 124 KKL---------PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFK 182 (575)
T ss_dssp HHS---------CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhh---------hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 3699999999997610 12 1 37899999999986543
No 42
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=94.84 E-value=0.67 Score=47.80 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHh-CCC--CC--
Q 013825 85 ADTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYF-GLG--QQ-- 159 (436)
Q Consensus 85 l~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~f-GI~--~~-- 159 (436)
+..|.+++.+...|+||+ .+|+..|+ .+|+... .++||+ ++...++. +.++|+.|++.| |.. +.
T Consensus 84 l~~L~~lL~d~~KV~h~~-k~Dl~~L~----~~gi~~~---~~fDt~-lAa~lL~~--~~~gL~~L~~~~lg~~~~K~~~ 152 (440)
T 3cym_A 84 WNDFNRAVGDAVWILHDS-LQDLPGFD----ELGMEPQ---RLFDTE-IAARLLGL--KRFGLAAVTEHFLGLTLAKEHS 152 (440)
T ss_dssp HHHHHHHHTTCEEEESSH-HHHHHHHH----HHTCCCC---EEEEHH-HHHHHTTC--SSCSHHHHHHHHHCEECCCCCT
T ss_pred HHHHHHHHCCCCEEEEcC-HHHHHHHH----HcCCcCC---ceehHH-HHHHHhCC--CCCCHHHHHHHHhCCCcccccc
Confidence 345777777778999999 99998875 4577643 589995 56667776 389999999988 642 10
Q ss_pred -------C------CChHHHHHHHHHHHHHHHHHhhhhc
Q 013825 160 -------T------HRSLDDVRMNLEVLKYCATVLFLES 185 (436)
Q Consensus 160 -------~------HrALdDAraTa~VLk~L~~~l~le~ 185 (436)
. +-|..||..+.+++..+...+....
T Consensus 153 ~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g 191 (440)
T 3cym_A 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQG 191 (440)
T ss_dssp TCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 1267899999999999988876443
No 43
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=51.67 E-value=1.3 Score=50.68 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=28.4
Q ss_pred CCEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHH
Q 013825 94 GRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLT 135 (436)
Q Consensus 94 g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Lar 135 (436)
.+++||||+ .||+.++++++ .+.. ...+++|||.|-.
T Consensus 194 ~rlIVGHNV-syDRARI~EeY---~l~~-sk~rFlDTMSLHv 230 (1172)
T 3ikm_A 194 EQLVVGHNV-SFDRAHIREQY---LIQG-SRMRFLDTMSMHM 230 (1172)
T ss_dssp CCCCBCBCS-SSSTTGGGTSS---CSSC-CCCCCCBTTHHHH
T ss_pred ccEEEeCCc-chhHHHHHHHH---hccc-CCceeeechhhhh
Confidence 589999999 99999998754 4543 2346899998843
No 44
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=48.24 E-value=32 Score=38.26 Aligned_cols=82 Identities=11% Similarity=0.002 Sum_probs=58.4
Q ss_pred HHHHHHHcCCEEEEEccccchHHHHHHHHHHcCCCCCCCCceeeHHHHHHHHhcCCCCCCCHHHHHHHhCCCCCCCChHH
Q 013825 86 DTVFDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGTIDSLALLTQRFGRRAGDMKMASLATYFGLGQQTHRSLD 165 (436)
Q Consensus 86 ~~f~efL~g~vLVaHNa~~FD~~fLr~a~~r~Gi~~p~~~~~IDTl~Larr~l~~~~~~~kL~~LA~~fGI~~~~HrALd 165 (436)
+.|..|+.+.-+ |+ .||+.+|.+ +|+... .+.||+- +...+.+. .++|+.|+..||-... -....
T Consensus 340 ~~Lk~lLed~~i---n~-K~d~~~L~~----~Gi~~~---~~~Dt~l-aayLl~p~--~~~l~~l~~~~gk~~~-~~ya~ 404 (832)
T 1bgx_T 340 KALRDLKEARGL---LA-KDLSVLALR----EGLGLP---PGDDPML-LAYLLDPS--NTTPEGVARRYGGEWT-EEAGE 404 (832)
T ss_dssp HHHHHCSSBCBT---TH-HHHHHHHHH----HTCCCC---BCCCHHH-HHHHHCTT--CCSTTHHHHHHSCCCC-SSHHH
T ss_pred HHHHHHHhCCCC---Ch-HHHHHHHHH----cCCccC---cccCHHH-HHHHcCCC--CCCHHHHHHHhCCCch-HHHHH
Confidence 457777775433 88 999888864 588755 3689985 45567665 7899999999974211 11236
Q ss_pred HHHHHHHHHHHHHHHhh
Q 013825 166 DVRMNLEVLKYCATVLF 182 (436)
Q Consensus 166 DAraTa~VLk~L~~~l~ 182 (436)
||..+.+++..+..++.
T Consensus 405 da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 405 RAALSERLFANLWGRLE 421 (832)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999877665
No 45
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=27.16 E-value=98 Score=32.26 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=34.5
Q ss_pred CcEEEEEEecCCCCCCC-----------------------CCCcEEEEEEEEEeCCc---ceEeeeEEEEEcCC
Q 013825 8 SEIAFFDVETTVPTRPG-----------------------QRFAILEFGAILVCPKK---LEELHNYSTLVRPA 55 (436)
Q Consensus 8 ~~fV~fDLETTGl~p~g-----------------------~~~~IIEIGAV~V~~~~---levl~sfstLVrP~ 55 (436)
-+||++|+|.||+...+ ..-.|||||...++.++ ......|+.++-|.
T Consensus 24 ~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~~~~~~~~~fNf~~fp~ 97 (507)
T 3d45_A 24 ADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK 97 (507)
T ss_dssp CSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSSSSCEEEEEEEEEBCCC
T ss_pred CCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCCCCceeEEeEEEEecCc
Confidence 57999999999985311 12479999999998542 13457788888775
No 46
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=26.62 E-value=99 Score=31.52 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=33.8
Q ss_pred CcEEEEEEecCCCCCCC-----------------------CCCcEEEEEEEEEeCCc---ceEeeeEEEEEcCC
Q 013825 8 SEIAFFDVETTVPTRPG-----------------------QRFAILEFGAILVCPKK---LEELHNYSTLVRPA 55 (436)
Q Consensus 8 ~~fV~fDLETTGl~p~g-----------------------~~~~IIEIGAV~V~~~~---levl~sfstLVrP~ 55 (436)
-+||++|+|.||+.... ..-.|||+|...++.++ ......|+.++=|.
T Consensus 22 ~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~ 95 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK 95 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCC
T ss_pred CCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccc
Confidence 47999999999984311 12469999999987532 23457788887553
Done!